Citrus Sinensis ID: 045930
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 661 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C8J8 | 678 | ABC transporter G family | yes | no | 1.0 | 0.974 | 0.682 | 0.0 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.998 | 0.955 | 0.659 | 0.0 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.998 | 0.960 | 0.657 | 0.0 | |
| Q8RXN0 | 703 | ABC transporter G family | no | no | 0.937 | 0.881 | 0.556 | 0.0 | |
| Q9ZUU9 | 730 | ABC transporter G family | no | no | 0.898 | 0.813 | 0.344 | 1e-102 | |
| Q9ZU35 | 725 | ABC transporter G family | no | no | 0.800 | 0.729 | 0.327 | 4e-77 | |
| Q8MIB3 | 656 | ATP-binding cassette sub- | yes | no | 0.786 | 0.792 | 0.336 | 1e-70 | |
| Q4GZT4 | 655 | ATP-binding cassette sub- | yes | no | 0.786 | 0.793 | 0.316 | 3e-69 | |
| Q5MB13 | 654 | ATP-binding cassette sub- | yes | no | 0.860 | 0.870 | 0.316 | 5e-69 | |
| Q9UNQ0 | 655 | ATP-binding cassette sub- | yes | no | 0.842 | 0.850 | 0.306 | 1e-68 |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/671 (68%), Positives = 565/671 (84%), Gaps = 10/671 (1%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
MY+ WE++TVV+PNFG G T+RLLNG+ G EP RILA+MGPSGSGKSTLLDALAGRL+G
Sbjct: 8 MYVAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAG 67
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
NVVM+G VL+NGKKRRLD+G AYVTQE+++LGTLTVRE+I+YSAHLRLPS + EEI+D
Sbjct: 68 NVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISD 127
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
++E IT+MGLE+C+DR IGNWH RGISGGEKKRLSIALE+LT+P LLFLDEPTSGLDSA
Sbjct: 128 IVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSA 187
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
+AFFVV+IL+NIA G+T++SSIHQPS EVFALFDDL LLSGGETVYFGEA+SA FF E
Sbjct: 188 SAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGE 247
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRIC----------ETQNPLGPIRNLP 290
AGFPCP+RRNPSDHFLRC+NSDFD VT L+ES+RI ET N L P+ ++P
Sbjct: 248 AGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIP 307
Query: 291 TSEIKGILIKKYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLN 350
T+EI+ L++K++CS YA +R+RIQ I+SI G+ +RK GSQ WWKQL ILTQRS +N
Sbjct: 308 TAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQRSFIN 367
Query: 351 MSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPS 410
MSRD GYYW+RIA+YI+LS+CVGSIF++VG N+T + + +C F++GFMTFMSIGGF S
Sbjct: 368 MSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQS 427
Query: 411 FIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIY 470
FIEEM+VFSRERLNGHYGVAVY +SN LSSLPF+ M +T+SIT YMV+F+ G SHF Y
Sbjct: 428 FIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 487
Query: 471 AGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRY 530
LDL +I +ESCMMMIAS+VPN+L G+++GAGY+GIM++++G+FR PD+P VFWRY
Sbjct: 488 NCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRY 547
Query: 531 PIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVV 590
P++YINYGAWALQGAYKN++IG+E+D+ PK+KG++IL+T+LG+N + SKW DLAVV
Sbjct: 548 PVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVV 607
Query: 591 VAILISYRVIFFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSL 650
+ ILI YR+ FFAILKFREK PV H +Y KRTL H+QKRPSFR+M PFPS+R+ V H+L
Sbjct: 608 MMILIGYRIAFFAILKFREKVFPVIHMLYTKRTLSHIQKRPSFRRMTPFPSRRYPVHHAL 667
Query: 651 SSQEGLNSPIH 661
SSQEGLNSP+H
Sbjct: 668 SSQEGLNSPLH 678
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/667 (65%), Positives = 551/667 (82%), Gaps = 7/667 (1%)
Query: 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN 61
YL WE++TVV+PNF GPTRRLL L GYAEP RI+A+MGPSGSGKSTLLD+LAGRL+ N
Sbjct: 24 YLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLARN 83
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
VVMTGN+LLNGKK RLDYG VAYVTQE+++LGTLTVRETI YSAHLRLPS+M+ EE++D+
Sbjct: 84 VVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSDI 143
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+E I E+GL+DC+DR+IGNWH RG+SGGE+KR+SIALEILTRPQ+LFLDEPTSGLDSA+
Sbjct: 144 VEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSAS 203
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
AFFV++ L+NIA DGRT+ISS+HQPSSEVFALFDDLFLLS GE+VYFGEAKSA FFAE+
Sbjct: 204 AFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAVEFFAES 263
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
GFPCP +RNPSDHFLRCINSDFD VT L SQRI ET P+ NL TS IK L++
Sbjct: 264 GFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATSVIKARLVEN 323
Query: 302 YRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLR 361
Y+ S+YA A+SRI+ +S+IEGLE + + GS+A WWKQL LT RS +NM RD GYYW R
Sbjct: 324 YKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMCRDVGYYWTR 383
Query: 362 IAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRE 421
I YI++S+ VG+IFYDVG +YT+I AR SC FI+GFMTFMSIGGFPSF+EEM+VF +E
Sbjct: 384 IISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKE 443
Query: 422 RLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAV 481
RL+G+YGV+VYILSN++SS PFL A+S T +ITY +VKFRPG SH+ + L++ S++V
Sbjct: 444 RLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSV 503
Query: 482 IESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWA 541
IES MM++AS+VPN+L G+I GAG +GI+MMTSG+FRL+PD+PK+FWRYP++YI+YG+WA
Sbjct: 504 IESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPVSYISYGSWA 563
Query: 542 LQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIF 601
+QG YKND +GLEF+ + PK+ G+ +++ + G+ + SKWWDLA VVAIL+ YR++F
Sbjct: 564 IQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVVAILVCYRLLF 623
Query: 602 FAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMP-------PFPSKRHQVLHSLSSQE 654
F +LK RE+A P ++ AKRT+ +L +RPSF++MP S+RHQ L SLSSQE
Sbjct: 624 FVVLKLRERAGPALKAIQAKRTMRNLDRRPSFKRMPSLSLSLSSMSSRRHQPLRSLSSQE 683
Query: 655 GLNSPIH 661
GLNSPIH
Sbjct: 684 GLNSPIH 690
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/665 (65%), Positives = 549/665 (82%), Gaps = 5/665 (0%)
Query: 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN 61
YL WE++TVV+PNF GPTRRLL+GL G+AEP RI+A+MGPSGSGKSTLLD+LAGRL+ N
Sbjct: 23 YLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLARN 82
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V+MTGN+LLNGKK RLDYG VAYVTQE+I++GTLTVRETI YSAHLRL S++ EE+ D+
Sbjct: 83 VIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVNDI 142
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+E I E+GL+DCADR+IGNWH RG+SGGE+KR+S+ALEILTRPQ+LFLDEPTSGLDSA+
Sbjct: 143 VEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSAS 202
Query: 182 AFFVVKILKNIAHDG-RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
AFFV++ L+NIA DG RT++SSIHQPSSEVFALFDDLFLLS GETVYFGE+K A FFAE
Sbjct: 203 AFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEFFAE 262
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIK 300
AGFPCP +RNPSDHFLRCINSDFD VT L SQRI ET P+ NL TSEIK L++
Sbjct: 263 AGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRETPATSDPLMNLATSEIKARLVE 322
Query: 301 KYRCSEYATRARSRIQGISSIEGLE-FKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYW 359
YR S YA A+SRI+ ++SIEG + + GS+A W+KQL LT+RS +NM RD GYYW
Sbjct: 323 NYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGYYW 382
Query: 360 LRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFS 419
RI IYI++S CVG+IFYDVG +YT+I AR SC FI+GFMTFMSIGGFPSFIEEM+VF
Sbjct: 383 SRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFY 442
Query: 420 RERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSI 479
+ERL+G+YGV+VYI+SN++SS PFL A++ T SITY MVKFRPG+SH+ + L++ S+
Sbjct: 443 KERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSV 502
Query: 480 AVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGA 539
+VIES MM++AS+VPN+L G+I GAG +GI+MMTSG+FRL+PD+PKVFWRYPI++++YG+
Sbjct: 503 SVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMSYGS 562
Query: 540 WALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRV 599
WA+QGAYKND +GLEFD + PK+ G+ ++ + G+ + SKWWDL+ +V IL+ YR+
Sbjct: 563 WAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLILVCYRI 622
Query: 600 IFFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMP---PFPSKRHQVLHSLSSQEGL 656
+FF +LK +E+A P ++ AKRT+ L+KRPSF+K+P S+RHQ LHSLSSQEGL
Sbjct: 623 LFFIVLKLKERAEPALKAIQAKRTMKSLKKRPSFKKVPSLSSLSSRRHQPLHSLSSQEGL 682
Query: 657 NSPIH 661
SPI+
Sbjct: 683 TSPIN 687
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Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/624 (55%), Positives = 466/624 (74%), Gaps = 4/624 (0%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV 62
L W+++TV+V G G T+ +L GLTGYAEP + A+MGPSGSGKST+LDALA RL+ N
Sbjct: 50 LTWQDLTVMV-TMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANA 108
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
++G VLLNG+K +L +G AYVTQ++ ++GTLTVRETI YSA +RLP M E ++
Sbjct: 109 FLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALV 168
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
E I EMGL+DCAD +IGNWH RGISGGEK+R+SIALEIL RP+LLFLDEPTSGLDSA+A
Sbjct: 169 ERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASA 228
Query: 183 FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAG 242
FFV + L+ ++ DGRT+I+SIHQPSSEVF LFD L+LLSGG+TVYFG+A A FFA+AG
Sbjct: 229 FFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAG 288
Query: 243 FPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKY 302
FPCP RNPSDHFLRCINSDFD V L S ++ + P+ + T+E +L+ Y
Sbjct: 289 FPCPALRNPSDHFLRCINSDFDKVRATLKGSMKL-RFEASDDPLEKITTAEAIRLLVDYY 347
Query: 303 RCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRI 362
S+Y A+++++ IS +G GSQA + Q LT+RS +NMSRDFGYYWLR+
Sbjct: 348 HTSDYYYTAKAKVEEISQFKGTILD-SGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRL 406
Query: 363 AIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRER 422
IYI+++VC+G+I+ +VGT+Y+AI ARGSCA+F+ GF+TFMSIGGFPSF+E+M+VF RER
Sbjct: 407 LIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRER 466
Query: 423 LNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVI 482
LNGHYGVA ++++N LS+ PFL ++F + +I Y+MV PG +H+++ L L +S+ V+
Sbjct: 467 LNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVV 526
Query: 483 ESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWAL 542
ES MM IAS+VPN+L GIIIGAG GI M+ SG+FRL DIPK FWRYP++YI++ WAL
Sbjct: 527 ESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWAL 586
Query: 543 QGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFF 602
QG Y+NDL GL FD+ K+ G+ +L+ + ++L RSKW +L+V+++++I YR+IFF
Sbjct: 587 QGQYQNDLRGLTFDS-QGSAFKIPGEYVLENVFQIDLHRSKWINLSVILSMIIIYRIIFF 645
Query: 603 AILKFREKASPVFHSVYAKRTLHH 626
++K E +P A+R +
Sbjct: 646 IMIKTNEDVTPWVRGYIARRRMKQ 669
|
Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/607 (34%), Positives = 350/607 (57%), Gaps = 13/607 (2%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV 62
+ W+++TV + + +++ GYA P + +MGP+ SGKSTLL ALAGRL +
Sbjct: 114 IAWKDLTVTMKG-KRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSA 172
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
M G V +NG K + YG +V +E ++G+LTVRE + YSA L+LP + + V+
Sbjct: 173 KMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKR--SVV 230
Query: 123 EEAITEMGLEDCADRLIG-NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
E+AI M L D A++LIG + + +G+ GE++R+SIA E++ RP +LF+DEP LDS +
Sbjct: 231 EDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVS 290
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
A ++ LK +A G T++ +I+Q S+EVF LFD + LLS G T++FGE + F+ A
Sbjct: 291 ALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 350
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
GFPCP ++PSDHFLR IN+DFD + + Q N N+ T+ L
Sbjct: 351 GFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQ----DDNGDFSAVNMDTAVAIRTLEAT 406
Query: 302 YRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLR 361
Y+ S A + I ++ EG + K K + A ++++LT RS L MSR++ YYWLR
Sbjct: 407 YKSSADADSVEAMIIKLTEREGTQLKSKGKAGAA--TRVAVLTWRSLLVMSREWKYYWLR 464
Query: 362 IAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRE 421
+ +Y+IL++ +G+++ +G + +++ R + F + + I G PS ++E++++ E
Sbjct: 465 LILYMILTLSIGTLYSGLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSE 524
Query: 422 RLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAV 481
N H G V++L FL S+PFL MS +++ + Y+MV R S +Y L+ + V
Sbjct: 525 ASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLV 584
Query: 482 IESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWA 541
E M+ IA + + + IMM+ +G+FR+ +PK W YP AYI++ ++
Sbjct: 585 NEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYS 644
Query: 542 LQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLD-RSKWWDLAVVVAILISYRVI 600
++G +N+ +G F + + G ++ ++ D +KW ++ V++A+ YR++
Sbjct: 645 IEGLLENEYLGEVFAV--GEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLL 702
Query: 601 FFAILKF 607
+ +L+F
Sbjct: 703 VYVLLRF 709
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 184/561 (32%), Positives = 298/561 (53%), Gaps = 32/561 (5%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNV 62
W +T + + S R LL ++G A+P R+LA+MGPSGSGK+TLL+ LAG+LS +
Sbjct: 72 WRNITCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRL 131
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
++G + +NGK +A+V QE++ LTVRET++++A L+LP + EE + +
Sbjct: 132 HLSGLLEVNGKPSSSKAYKLAFVRQEDLFFSQLTVRETLSFAAELQLPEISSAEERDEYV 191
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
+ ++GL CAD +G+ RGISGGEKKRLS+A E++ P ++F DEPT+GLD+ A
Sbjct: 192 NNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQA 251
Query: 183 FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP-TFFAEA 241
V++ L+ +A DG T+I SIHQP V+A FDD+ LL+ G VY G A P T+F
Sbjct: 252 EKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDIVLLTEGTLVYAGPAGKEPLTYFGNF 311
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
GF CP NP++ I+ D+ S+ + +Q + + + + +L
Sbjct: 312 GFLCPEHVNPAEFLADLISVDYS-------SSETVYSSQKRVHALVDAFSQRSSSVLYAT 364
Query: 302 YRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLR 361
+ T+ R + + +E R +G WW+Q +L +R+ + SRD +R
Sbjct: 365 PLSMKEETKNGMRPRRKAIVE-----RTDG----WWRQFFLLLKRAWMQASRDGPTNKVR 415
Query: 362 IAIYIILSVCVGSIFYDVGTNYTAIYARGSC--AAFISGFMTFMS--IGGFPSFIEEMRV 417
+ + +V GS+F+ +G + T+I R A I+ M ++ +G FP +E +
Sbjct: 416 ARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVFP---KERAI 472
Query: 418 FSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHF-IYAGLDLT 476
RER G Y + Y+LS ++ +P A ++ Y M + P +S F + G+
Sbjct: 473 VDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTLSRFGKFCGIVTV 532
Query: 477 SSIAVIESCM-MMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYI 535
S A S M + + +MVP+ + +G + + ++ GY+ + P +F P A +
Sbjct: 533 ESFAA--SAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRASL 590
Query: 536 NYGAWALQGAYKNDLIGLEFD 556
WA QG N+ GL+FD
Sbjct: 591 IR--WAFQGLCINEFSGLKFD 609
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 184/547 (33%), Positives = 277/547 (50%), Gaps = 27/547 (4%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
+ +L + G +P + A++GP+G GKS+LLD LA R + ++G+VL+NG R ++
Sbjct: 61 KEILTNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHG-LSGDVLINGAPRPANFK 118
Query: 81 -GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
YV Q+++++GTLTVRE + +SA LRLP+ M N E + I I E+GL+ AD +
Sbjct: 119 CNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKV 178
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
G RG+SGGE+KR SIA+E++T P +LFLDEPT+GLDS+ A V+ +LK ++ GRTI
Sbjct: 179 GTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTI 238
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCI 259
I SIHQP +F LFD L LL+ G ++ G A+ A +FA G+ C NP+D FL I
Sbjct: 239 IFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAREALGYFASIGYNCEPYNNPADFFLDVI 298
Query: 260 NSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGI--LIKKYRCSEYATRARSRIQG 317
N D V VL + R Q P P P + I L Y S + + +
Sbjct: 299 NGDSSAV--VLSRADRDEGAQEPEEP----PEKDTPLIDKLAAFYTNSSFFKDTKVELDQ 352
Query: 318 ISSIEGLEFKRKNGSQAK-------WWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSV 370
S K+K S K + QL +++RS N+ + +I + IIL +
Sbjct: 353 FSGGR----KKKKSSVYKEVTYTTSFCHQLRWISRRSFKNLLGNPQASVAQIIVTIILGL 408
Query: 371 CVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVA 430
+G+IFYD+ + + I R F++ F S+ + E ++F E ++G+Y V+
Sbjct: 409 VIGAIFYDLKNDPSGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVS 468
Query: 431 VYILSNFLSS-LPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMI 489
Y LS LP S T ITY+++ +P + F L S + I
Sbjct: 469 SYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPAVGSFFIMMFTLMMVAYSASSMALAI 528
Query: 490 ASMVPNYLTGIIIGAGYLGIMMMTSGYF-RLIPDIPKVFWRYPIAYINYGAWALQGAYKN 548
A+ ++ MM+ SG L +P + W + YG ALQ N
Sbjct: 529 AAGQSVVSVATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYFSIPRYGFSALQ---YN 585
Query: 549 DLIGLEF 555
+ +G F
Sbjct: 586 EFLGQNF 592
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Sus scrofa (taxid: 9823) |
| >sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 173/547 (31%), Positives = 280/547 (51%), Gaps = 27/547 (4%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
+ +L + G +P + A++GP+G GKS+LLD LA R + ++G+VL+NG R ++
Sbjct: 60 KEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHG-LSGDVLINGAPRPANFK 117
Query: 81 -GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
YV Q+++++GTLTVRE + +SA LRLP+ M + E + I + I E+GL+ AD +
Sbjct: 118 CNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKV 177
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
G RG+SGGE+KR SIA+E++T P +LFLDEPT+GLDS+ A V+ +LK ++ GRTI
Sbjct: 178 GTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTI 237
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCI 259
I SIHQP +F LFD L LL+ G ++ G A+ A +F GF C NP+D FL I
Sbjct: 238 IFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPYNNPADFFLDII 297
Query: 260 NSDFDVVT-------EVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRAR 312
N D V + E++ + PL I L + K+ +
Sbjct: 298 NGDSSAVVLNREDIGDEANETEEPSKKDTPL--IEKLAEFYVNSSFFKETKVELDKFSGD 355
Query: 313 SRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCV 372
R + + S + + + Q KW +++RS N+ + ++ + + L + +
Sbjct: 356 QRRKKLPSYKEVTYATSFCHQLKW------ISRRSFKNLLGNPQASIAQLIVTVFLGLVI 409
Query: 373 GSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVY 432
G+IFYD+ + I R F++ F S+ + E ++F E ++G+Y V+ Y
Sbjct: 410 GAIFYDLKNDPAGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSY 469
Query: 433 ILSNFLSS-LPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIA- 490
LS LP S T ITY+++ +P + F L L S + IA
Sbjct: 470 FFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIAA 529
Query: 491 --SMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKN 548
S+V + +++ ++ +M+ + L +P + W ++ YG ALQ N
Sbjct: 530 GQSVVS--IATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYLSIPRYGYAALQ---HN 584
Query: 549 DLIGLEF 555
+ +G F
Sbjct: 585 EFLGQNF 591
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Bos taurus (taxid: 9913) |
| >sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 189/597 (31%), Positives = 294/597 (49%), Gaps = 28/597 (4%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRLD 78
+ +L+ + G +P + A++GP+G GKS+LLD LA R SG ++G+VL+NG R +
Sbjct: 61 KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG---LSGDVLINGALRPTN 116
Query: 79 YG-GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
+ YV Q+++++GTLTVRE + +SA LRLP+ M N E + I I E+GL+ AD
Sbjct: 117 FKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGLDKVADS 176
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
+G RG+SGGE+KR SI +E++T P +LFLDEPT+GLDS+ A V+ +LK ++ GR
Sbjct: 177 KVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGR 236
Query: 198 TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLR 257
TII SIHQP +F LFD L LL+ G ++ G A+ A +F AG+ C NP+D FL
Sbjct: 237 TIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLD 296
Query: 258 CINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQG 317
IN D V E + E P R+ P E L + Y S + ++ +
Sbjct: 297 IINGDSTAVALNREEDFKATEIIEP--SKRDKPLVE---KLAEIYVDSSFYKETKAELHQ 351
Query: 318 ISSIEGLEFK--RKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSI 375
+S E + ++ + QL +++RS N+ + +I + +IL + +G+I
Sbjct: 352 LSGGEKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVILGLVIGAI 411
Query: 376 FYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYILS 435
++ + + T I R F++ F S+ F+ E ++F E ++G+Y V+ Y
Sbjct: 412 YFGLNNDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYFFG 471
Query: 436 NFLSS-LPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVP 494
LS LP S T I Y+M+ +P F L S + IA+
Sbjct: 472 KLLSDLLPMRMLPSIIFTCIVYFMLGLKPTADAFFIMMFTLMMVAYSASSMALAIAAGQS 531
Query: 495 NYLTGIIIGAGYLGIMMMTSGYFRLIPDIPK-VFWRYPIAYINYGAWALQGAYKNDLIGL 553
++ MM+ SG + I + W + YG ALQ N+ +G
Sbjct: 532 VVSVATLLMTICFVFMMIFSGLLVNLTTIASWLSWLQYFSIPRYGFTALQ---HNEFLGQ 588
Query: 554 EF----DAIDRDGPKLKGDVILKTMLGMNLDRSKW--WDLAVVVAILISYRVIFFAI 604
F +A + + + +D S W W V +A +I VIF I
Sbjct: 589 NFCPGLNATVNNTCNYATCTGEEYLAKQGIDLSPWGLWKNHVALACMI---VIFLTI 642
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells. Macaca mulatta (taxid: 9544) |
| >sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 187/610 (30%), Positives = 297/610 (48%), Gaps = 53/610 (8%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRLD 78
+ +L+ + G +P + A++GP+G GKS+LLD LA R SG ++G+VL+NG R +
Sbjct: 61 KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSG---LSGDVLINGAPRPAN 116
Query: 79 YG-GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
+ YV Q+++++GTLTVRE + +SA LRL + M N E + I I E+GL+ AD
Sbjct: 117 FKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADS 176
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
+G RG+SGGE+KR SI +E++T P +LFLDEPT+GLDS+ A V+ +LK ++ GR
Sbjct: 177 KVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGR 236
Query: 198 TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLR 257
TII SIHQP +F LFD L LL+ G ++ G A+ A +F AG+ C NP+D FL
Sbjct: 237 TIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLD 296
Query: 258 CINSDFDVVT---EVLMESQRICETQNPLGP-IRNLPTSEIKGILIKKYRCSEYATRARS 313
IN D V E ++ I E P I L + K+ + +
Sbjct: 297 IINGDSTAVALNREEDFKATEIIEPSKQDKPLIEKLAEIYVNSSFYKETKAELHQLSGGE 356
Query: 314 RIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVG 373
+ + I+ + + + Q +W +++RS N+ + +I + ++L + +G
Sbjct: 357 KKKKITVFKEISYTTSFCHQLRW------VSKRSFKNLLGNPQASIAQIIVTVVLGLVIG 410
Query: 374 SIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYI 433
+I++ + + T I R F++ F S+ F+ E ++F E ++G+Y V+ Y
Sbjct: 411 AIYFGLKNDSTGIQNRAGVLFFLTTNQCFSSVSAVELFVVEKKLFIHEYISGYYRVSSYF 470
Query: 434 LSNFLSS-LPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASM 492
L LS LP S T I Y+M+ +P F V+ +MM+A
Sbjct: 471 LGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADAFF-----------VMMFTLMMVAYS 519
Query: 493 VPNYLTGIIIGAGYLGI-----------MMMTSGYFRLIPDIPK-VFWRYPIAYINYGAW 540
+ I G + + MM+ SG + I + W + YG
Sbjct: 520 ASSMALAIAAGQSVVSVATLLMTICFVFMMIFSGLLVNLTTIASWLSWLQYFSIPRYGFT 579
Query: 541 ALQGAYKNDLIGLEF----DAIDRDGPKLKGDVILKTMLGMNLDRSKW--WDLAVVVAIL 594
ALQ N+ +G F +A + + ++ +D S W W V +A +
Sbjct: 580 ALQ---HNEFLGQNFCPGLNATGNNPCNYATCTGEEYLVKQGIDLSPWGLWKNHVALACM 636
Query: 595 ISYRVIFFAI 604
I VIF I
Sbjct: 637 I---VIFLTI 643
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 661 | ||||||
| 224106201 | 662 | white-brown-complex ABC transporter fami | 0.995 | 0.993 | 0.734 | 0.0 | |
| 356538481 | 692 | PREDICTED: ABC transporter G family memb | 0.995 | 0.950 | 0.722 | 0.0 | |
| 255544916 | 693 | ATP-binding cassette transporter, putati | 0.996 | 0.950 | 0.715 | 0.0 | |
| 357474153 | 689 | ABC transporter G family member [Medicag | 1.0 | 0.959 | 0.723 | 0.0 | |
| 297734944 | 2144 | unnamed protein product [Vitis vinifera] | 0.996 | 0.307 | 0.727 | 0.0 | |
| 225436540 | 682 | PREDICTED: ABC transporter G family memb | 0.996 | 0.966 | 0.727 | 0.0 | |
| 147784155 | 682 | hypothetical protein VITISV_002210 [Viti | 0.996 | 0.966 | 0.727 | 0.0 | |
| 356544349 | 688 | PREDICTED: ABC transporter G family memb | 0.996 | 0.957 | 0.718 | 0.0 | |
| 356538483 | 715 | PREDICTED: ABC transporter G family memb | 1.0 | 0.924 | 0.700 | 0.0 | |
| 224054952 | 662 | white-brown-complex ABC transporter fami | 0.995 | 0.993 | 0.716 | 0.0 |
| >gi|224106201|ref|XP_002314083.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222850491|gb|EEE88038.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/662 (73%), Positives = 569/662 (85%), Gaps = 4/662 (0%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
M+LVWE++TVV+PNFG+GPTRRLLNGL GYAEP +ILA+MGPSGSGKSTLLDALAGRL+G
Sbjct: 1 MFLVWEDLTVVLPNFGNGPTRRLLNGLNGYAEPGKILAIMGPSGSGKSTLLDALAGRLAG 60
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
N VMTGNVLLNGKKRRLDYGGVAYVTQEN +LGTLTVRET+ YSAHLRLPS+M EEI D
Sbjct: 61 NAVMTGNVLLNGKKRRLDYGGVAYVTQENTLLGTLTVRETLNYSAHLRLPSSMAKEEIDD 120
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
++E I EMGL++C+DRLIGNWH RGISGGEKKRLSIALEIL RPQLLFLDEPTSGLDSA
Sbjct: 121 IVEGTIMEMGLQECSDRLIGNWHLRGISGGEKKRLSIALEILIRPQLLFLDEPTSGLDSA 180
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
AAFFV++ L+NIA DGRT+ISS+HQPSSEVFALFDDLFLLSGGETVYFGEAK A FFAE
Sbjct: 181 AAFFVIQTLRNIARDGRTVISSVHQPSSEVFALFDDLFLLSGGETVYFGEAKMAVEFFAE 240
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIK 300
AGFPCP+RRNPSDHFLRCINSDFD+VT LM S R E QNP + NLPT+EIK L+K
Sbjct: 241 AGFPCPSRRNPSDHFLRCINSDFDLVTATLMGSHR--EIQNPSDSLANLPTAEIKASLVK 298
Query: 301 KYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWL 360
KYR S +A AR+RIQ I +I+GL + +QA WWKQLS LT+RS +NM RD GYYW+
Sbjct: 299 KYRSSNHAANARARIQEIVAIKGLVVNIRKENQANWWKQLSTLTRRSFINMWRDLGYYWV 358
Query: 361 RIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSR 420
RI +YI+LS+CVG+IF DVG YTAI A G+C F+SGFMTFMSIGGFPSFIEE++VF +
Sbjct: 359 RIIVYILLSICVGTIFLDVGKGYTAILAHGACGGFLSGFMTFMSIGGFPSFIEELKVFYK 418
Query: 421 ERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIA 480
ERL+G+YGVAVY+LSNFLSS P+LT MSF T+SITYYMVKFRP S+F+Y DL SSIA
Sbjct: 419 ERLSGYYGVAVYVLSNFLSSFPYLTVMSFGTSSITYYMVKFRPEFSNFLYVFFDLLSSIA 478
Query: 481 VIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540
+ESCMM IAS+VPNYL G +IG+ Y+GI+MMTSG+FRL+PDIPKVFWRYPI+YIN+G+W
Sbjct: 479 TVESCMMTIASLVPNYLMGFVIGSAYIGILMMTSGFFRLLPDIPKVFWRYPISYINFGSW 538
Query: 541 ALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVI 600
LQGAYKND+IGLEFD + GPKLKG+ +L T+LG++LD SKWWDL+ V+ ILI++R++
Sbjct: 539 GLQGAYKNDMIGLEFDPLVPGGPKLKGEEVLTTVLGISLDHSKWWDLSAVLLILIAFRLL 598
Query: 601 FFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKM--PPFPSKRHQVLHSLSSQEGLNS 658
FFAILKF+E+ P+ +++KRTL HL+KRPSFRK PFPSKRHQ HSLSSQEGL+S
Sbjct: 599 FFAILKFKERTLPMLRELHSKRTLKHLKKRPSFRKTSYSPFPSKRHQPAHSLSSQEGLSS 658
Query: 659 PI 660
PI
Sbjct: 659 PI 660
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538481|ref|XP_003537732.1| PREDICTED: ABC transporter G family member 15-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/662 (72%), Positives = 569/662 (85%), Gaps = 4/662 (0%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
MYLVWE++TVVVPNFG+G TRRLL+GL+GYAEP RI+A+MGPSGSGKSTLLDALAGRLS
Sbjct: 34 MYLVWEDLTVVVPNFGNGHTRRLLDGLSGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSR 93
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
NV+M+GNVLLNGKKRRLDYG VAYVTQE+IMLGTLTVRETI+YSA+LRLPS M EE+ D
Sbjct: 94 NVIMSGNVLLNGKKRRLDYGVVAYVTQEDIMLGTLTVRETISYSANLRLPSTMTKEEVND 153
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+IE I EMGL+DCADRL+GNWH RGISGGEKKRLSIALEILTRP LLFLDEPTSGLDSA
Sbjct: 154 IIEGTIMEMGLQDCADRLVGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSA 213
Query: 181 AAFFVVKILKNIAHDGR-TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFA 239
+A+FV + L+N+ HDG+ T+ISSIHQPSSEVFALFDDLFLLSGG+T+YFG A+ A FFA
Sbjct: 214 SAYFVAQTLRNLGHDGKSTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGPAQKAVEFFA 273
Query: 240 EAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILI 299
+AGFPCP+RRNPSDHFLRCINSDFD VT +M QR+ E + G +L T+ IK LI
Sbjct: 274 KAGFPCPSRRNPSDHFLRCINSDFDAVTTTMMACQRVHEEMSITG---SLSTAAIKATLI 330
Query: 300 KKYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYW 359
+KYR SE+AT AR+RI+ IS+ EG F+ K+ +AKWWKQLS LT+RS +NMSRD GYYW
Sbjct: 331 EKYRWSEHATTARARIKEISTTEGHGFESKSKCEAKWWKQLSTLTRRSVVNMSRDVGYYW 390
Query: 360 LRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFS 419
+RI IY+ LS+ VG+IFY VG++Y AI+ARG+C AFISGFMTFMSIGGFPSFIEEM+VF
Sbjct: 391 IRITIYVALSLSVGTIFYGVGSSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFY 450
Query: 420 RERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSI 479
+ERLNG+YGV VYILSNFLSS PF+ MS AT +ITYYMVKFR SH++Y LDL I
Sbjct: 451 KERLNGYYGVGVYILSNFLSSFPFVAVMSIATGTITYYMVKFRTEFSHYVYICLDLIGCI 510
Query: 480 AVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGA 539
AV+ES MM+IAS+VPN+L G+IIGAGY+G+MMMT+GYFR IPD+PK+FWRYPI+YINYGA
Sbjct: 511 AVVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRQIPDLPKIFWRYPISYINYGA 570
Query: 540 WALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRV 599
W LQGA+KND+IG+EFD+++ GPKLKG++ILKTMLG+ +D SKWWDL V+ IL+ RV
Sbjct: 571 WGLQGAFKNDMIGMEFDSLEPGGPKLKGEIILKTMLGIRVDISKWWDLVAVMIILVLLRV 630
Query: 600 IFFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSLSSQEGLNSP 659
+FF ILKF+E+A+P +S+YA++TL ++KRPSFRK P FPSKRHQ LH LSSQEGLNSP
Sbjct: 631 LFFFILKFKERAAPFLYSIYARQTLQRIKKRPSFRKGPSFPSKRHQSLHPLSSQEGLNSP 690
Query: 660 IH 661
IH
Sbjct: 691 IH 692
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544916|ref|XP_002513519.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547427|gb|EEF48922.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/664 (71%), Positives = 559/664 (84%), Gaps = 5/664 (0%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
MYLVWE++TVV+PNF GPTRRL+NGL GYAEP +I+A+MGPSGSGKSTLLDALAGRLSG
Sbjct: 32 MYLVWEDLTVVLPNFSEGPTRRLINGLNGYAEPGKIMAIMGPSGSGKSTLLDALAGRLSG 91
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
NV+MTGNVL+NGKK+RL YGGVAYVTQEN +LGTLTV+ET+ YSA LRLP +M EEI
Sbjct: 92 NVIMTGNVLVNGKKKRLGYGGVAYVTQENTLLGTLTVKETLTYSALLRLPGSMTREEIEG 151
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
++E I EMGL DCADRLIGNWH RGISGGE+KRLSIALEIL RP LLFLDEPTSGLDSA
Sbjct: 152 IVEGTIMEMGLHDCADRLIGNWHLRGISGGEQKRLSIALEILIRPHLLFLDEPTSGLDSA 211
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP---TF 237
+AFFV++ L+NIA DGRT+I+SIHQPSSEVFALFDDLFLLSGGE VYFGEAK A F
Sbjct: 212 SAFFVIQTLRNIARDGRTVITSIHQPSSEVFALFDDLFLLSGGEVVYFGEAKMATEVTNF 271
Query: 238 FAEAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGI 297
FAEAGF CP+RRNPSDHFLRCINSDFD+VT LM + R + Q + NLPT+EIK +
Sbjct: 272 FAEAGFSCPSRRNPSDHFLRCINSDFDLVTATLMGAHR--DIQMSSDSLENLPTAEIKEV 329
Query: 298 LIKKYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGY 357
L+KKY+ S +A RA++ I+ I + +GLE KRK SQAKWWKQLSILTQRS +NM RD GY
Sbjct: 330 LVKKYKYSNHAARAKATIREILTTKGLEIKRKGESQAKWWKQLSILTQRSFINMWRDLGY 389
Query: 358 YWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRV 417
Y +RI IYI LS+CVGSIF DVG YT I ARG+CA FISGFMTFMSIGGFPSFIEE++V
Sbjct: 390 YRVRIGIYIALSICVGSIFQDVGNGYTGILARGACAGFISGFMTFMSIGGFPSFIEELKV 449
Query: 418 FSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTS 477
F +ERLNGHYGV VY LSNFLSS P+L MS ++ +I +YMVKF SH +YAGLDL
Sbjct: 450 FHKERLNGHYGVGVYTLSNFLSSFPYLAVMSISSATIIFYMVKFTTEFSHCVYAGLDLLG 509
Query: 478 SIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINY 537
IA +ESCMM IAS+VPN+L G+I+GAGY+GI++MTSG+FRL+PD+PKVFWRYP++Y+NY
Sbjct: 510 CIAAVESCMMAIASLVPNFLMGVIVGAGYIGILLMTSGFFRLLPDLPKVFWRYPVSYVNY 569
Query: 538 GAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISY 597
GAW LQG YKNDLIG+EFD + GPKLKG+V+L ++LG+N D SKWWDL+ VV +LI++
Sbjct: 570 GAWGLQGEYKNDLIGIEFDPLVPGGPKLKGEVVLTSVLGVNPDHSKWWDLSAVVILLIAF 629
Query: 598 RVIFFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSLSSQEGLN 657
R +F+AILKF+E+ P FH +YAKRT+ H+QKRPSFRK PFPSKRHQ+LHSLSSQEGLN
Sbjct: 630 RFLFYAILKFKERTLPAFHKLYAKRTIQHMQKRPSFRKSSPFPSKRHQILHSLSSQEGLN 689
Query: 658 SPIH 661
SPIH
Sbjct: 690 SPIH 693
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474153|ref|XP_003607361.1| ABC transporter G family member [Medicago truncatula] gi|355508416|gb|AES89558.1| ABC transporter G family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/661 (72%), Positives = 563/661 (85%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
M+LVWE+++VV+PNFG+G TRRLLNGL GY EP RI+A+MGPSGSGKSTLLDALAGRLSG
Sbjct: 29 MHLVWEDLSVVIPNFGNGHTRRLLNGLNGYVEPNRIMAIMGPSGSGKSTLLDALAGRLSG 88
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
NV+M+GNVLLNGKKRRLDYG VAYVTQE+I+LGTLTVRETI+YSA+LRLP+ M EE+ D
Sbjct: 89 NVIMSGNVLLNGKKRRLDYGVVAYVTQEDILLGTLTVRETISYSANLRLPATMTKEEVND 148
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
++E I EMGL+DCADRLIGNWH RGISGGEKKR SIALEILTRP LLFLDEPTSGLDSA
Sbjct: 149 IVEGTIMEMGLQDCADRLIGNWHLRGISGGEKKRTSIALEILTRPCLLFLDEPTSGLDSA 208
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
+A+FV + L+NIAHDG+T+ISSIHQPSSEVFALFDDLFLLSGG+T+YFG A++A FF +
Sbjct: 209 SAYFVAQTLRNIAHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGPAENAVEFFGK 268
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIK 300
AGFPCP+RRNPSDHFLRCINSDFD VT +M S R E + P NL T+EIK ILI+
Sbjct: 269 AGFPCPSRRNPSDHFLRCINSDFDTVTTTMMSSGRTHEPKTLAPPTMNLSTAEIKAILIE 328
Query: 301 KYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWL 360
KYR SEYAT AR+RI+ IS+ EG ++ K+ SQAKW KQLS LT RS +NMSRD GYYW+
Sbjct: 329 KYRWSEYATCARARIKQISNFEGHNYESKSKSQAKWLKQLSTLTHRSFVNMSRDVGYYWI 388
Query: 361 RIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSR 420
R+ IY+ LS+CVG+IFYD+G++YTAI ARG+C AFISGFMTFMSIGGFPSFIEEM+VF +
Sbjct: 389 RLTIYVALSLCVGTIFYDIGSSYTAILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYK 448
Query: 421 ERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIA 480
ERLNG+YG+AVYILSNFLSS PF+ MSFAT SITYYMVKFR SH +Y LDL IA
Sbjct: 449 ERLNGYYGIAVYILSNFLSSFPFIAVMSFATGSITYYMVKFRSEFSHLLYICLDLLGCIA 508
Query: 481 VIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540
V+ES MM+IA++VPN+L G+IIGAGY+G+MMMT+GYFR I D+PK FWRYPI+YINYGAW
Sbjct: 509 VVESSMMIIAALVPNFLMGLIIGAGYIGLMMMTAGYFRQIRDLPKFFWRYPISYINYGAW 568
Query: 541 ALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVI 600
LQGA+KND+IG+EFD + PKLKG++ILKT+LGM +D SKWWDLAVV+ IL+ +RVI
Sbjct: 569 GLQGAFKNDMIGMEFDPENPGEPKLKGEIILKTLLGMKVDYSKWWDLAVVIFILMLHRVI 628
Query: 601 FFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSLSSQEGLNSPI 660
FF ILKF+E+ P HS+Y K+TL ++KR SFRK P F SKRHQ LH LSSQEGLNSP
Sbjct: 629 FFFILKFKERVVPFLHSIYTKQTLRRIKKRASFRKTPSFASKRHQPLHPLSSQEGLNSPF 688
Query: 661 H 661
H
Sbjct: 689 H 689
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734944|emb|CBI17178.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1015 bits (2625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/660 (72%), Positives = 567/660 (85%), Gaps = 1/660 (0%)
Query: 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN 61
YLVWE++TVV+PNFG+GPT+RLL+GL+G AE RI+A+MGPSGSGKSTLLD+LAGRL+GN
Sbjct: 1486 YLVWEDLTVVLPNFGNGPTKRLLHGLSGCAEAGRIMAIMGPSGSGKSTLLDSLAGRLAGN 1545
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V+MTGNVLLNGKKRRLDYGGVAYVTQE+++LGTLTV+ET++YSAHLRLPS+M EE+ ++
Sbjct: 1546 VIMTGNVLLNGKKRRLDYGGVAYVTQEDVLLGTLTVKETLSYSAHLRLPSSMTREEVDEI 1605
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+E I EMGL+DC+DRL+GNWH RGISGGEKKR+SIALEIL+RP+LLFLDEPTSGLDSA+
Sbjct: 1606 VEGTIMEMGLQDCSDRLVGNWHLRGISGGEKKRVSIALEILSRPRLLFLDEPTSGLDSAS 1665
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
AFFV L+NIA DGR +ISSIHQPSSEVFALFDDLF+LSGGET+Y GEAK A FF EA
Sbjct: 1666 AFFVTHTLRNIARDGRIVISSIHQPSSEVFALFDDLFMLSGGETIYSGEAKKAVEFFDEA 1725
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
GFPCP+RRNPSDHFLRCINSDFDVVT L SQR E Q+ P+ NL T+EIK +L++K
Sbjct: 1726 GFPCPSRRNPSDHFLRCINSDFDVVTATLKGSQRKYEIQST-DPLMNLATAEIKAMLVRK 1784
Query: 302 YRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLR 361
Y+ SEYA RAR+RIQ IS+IEGL + + GSQA+WWKQLS LT+RSS+NMSRD GYYWLR
Sbjct: 1785 YKLSEYANRARARIQEISTIEGLVSESERGSQARWWKQLSTLTRRSSVNMSRDIGYYWLR 1844
Query: 362 IAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRE 421
+ IY ++SVCVG+I++DVGT YT+I ARG+C F+SGFMTFMSIGGFPSFIEEM+VF RE
Sbjct: 1845 VIIYTVVSVCVGTIYFDVGTGYTSILARGACGGFVSGFMTFMSIGGFPSFIEEMKVFYRE 1904
Query: 422 RLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAV 481
RLNGHYG+ V+ILSNFLSSLPFL MS TT+I YY VK +PG H+ + L L SSIAV
Sbjct: 1905 RLNGHYGILVFILSNFLSSLPFLIGMSLTTTTIIYYTVKLQPGFLHYTFGFLTLLSSIAV 1964
Query: 482 IESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWA 541
+ES MM++AS+VPN+L G++ GAG +GIMMMTSG+FRL+PDIPK WRYPI+YINYGAWA
Sbjct: 1965 VESIMMIVASLVPNFLLGMVTGAGIIGIMMMTSGFFRLLPDIPKPVWRYPISYINYGAWA 2024
Query: 542 LQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIF 601
LQGAYKN+LIGLEFD PKLKG+ IL T+LG+ +D SKWWDL VV ILISYRV+F
Sbjct: 2025 LQGAYKNELIGLEFDPPFPGEPKLKGEHILTTILGVRMDHSKWWDLTAVVIILISYRVLF 2084
Query: 602 FAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSLSSQEGLNSPIH 661
F ILK RE+ SP+F +Y KRTLHHL+KRPSFRK P FPSKRHQ L SLSSQEGLNSP+H
Sbjct: 2085 FTILKLRERTSPLFRRLYTKRTLHHLEKRPSFRKKPSFPSKRHQTLSSLSSQEGLNSPLH 2144
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436540|ref|XP_002274038.1| PREDICTED: ABC transporter G family member 15 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/660 (72%), Positives = 567/660 (85%), Gaps = 1/660 (0%)
Query: 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN 61
YLVWE++TVV+PNFG+GPT+RLL+GL+G AE RI+A+MGPSGSGKSTLLD+LAGRL+GN
Sbjct: 24 YLVWEDLTVVLPNFGNGPTKRLLHGLSGCAEAGRIMAIMGPSGSGKSTLLDSLAGRLAGN 83
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V+MTGNVLLNGKKRRLDYGGVAYVTQE+++LGTLTV+ET++YSAHLRLPS+M EE+ ++
Sbjct: 84 VIMTGNVLLNGKKRRLDYGGVAYVTQEDVLLGTLTVKETLSYSAHLRLPSSMTREEVDEI 143
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+E I EMGL+DC+DRL+GNWH RGISGGEKKR+SIALEIL+RP+LLFLDEPTSGLDSA+
Sbjct: 144 VEGTIMEMGLQDCSDRLVGNWHLRGISGGEKKRVSIALEILSRPRLLFLDEPTSGLDSAS 203
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
AFFV L+NIA DGR +ISSIHQPSSEVFALFDDLF+LSGGET+Y GEAK A FF EA
Sbjct: 204 AFFVTHTLRNIARDGRIVISSIHQPSSEVFALFDDLFMLSGGETIYSGEAKKAVEFFDEA 263
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
GFPCP+RRNPSDHFLRCINSDFDVVT L SQR E Q+ P+ NL T+EIK +L++K
Sbjct: 264 GFPCPSRRNPSDHFLRCINSDFDVVTATLKGSQRKYEIQST-DPLMNLATAEIKAMLVRK 322
Query: 302 YRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLR 361
Y+ SEYA RAR+RIQ IS+IEGL + + GSQA+WWKQLS LT+RSS+NMSRD GYYWLR
Sbjct: 323 YKLSEYANRARARIQEISTIEGLVSESERGSQARWWKQLSTLTRRSSVNMSRDIGYYWLR 382
Query: 362 IAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRE 421
+ IY ++SVCVG+I++DVGT YT+I ARG+C F+SGFMTFMSIGGFPSFIEEM+VF RE
Sbjct: 383 VIIYTVVSVCVGTIYFDVGTGYTSILARGACGGFVSGFMTFMSIGGFPSFIEEMKVFYRE 442
Query: 422 RLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAV 481
RLNGHYG+ V+ILSNFLSSLPFL MS TT+I YY VK +PG H+ + L L SSIAV
Sbjct: 443 RLNGHYGILVFILSNFLSSLPFLIGMSLTTTTIIYYTVKLQPGFLHYTFGFLTLLSSIAV 502
Query: 482 IESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWA 541
+ES MM++AS+VPN+L G++ GAG +GIMMMTSG+FRL+PDIPK WRYPI+YINYGAWA
Sbjct: 503 VESIMMIVASLVPNFLLGMVTGAGIIGIMMMTSGFFRLLPDIPKPVWRYPISYINYGAWA 562
Query: 542 LQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIF 601
LQGAYKN+LIGLEFD PKLKG+ IL T+LG+ +D SKWWDL VV ILISYRV+F
Sbjct: 563 LQGAYKNELIGLEFDPPFPGEPKLKGEHILTTILGVRMDHSKWWDLTAVVIILISYRVLF 622
Query: 602 FAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSLSSQEGLNSPIH 661
F ILK RE+ SP+F +Y KRTLHHL+KRPSFRK P FPSKRHQ L SLSSQEGLNSP+H
Sbjct: 623 FTILKLRERTSPLFRRLYTKRTLHHLEKRPSFRKKPSFPSKRHQTLSSLSSQEGLNSPLH 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784155|emb|CAN77224.1| hypothetical protein VITISV_002210 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/660 (72%), Positives = 567/660 (85%), Gaps = 1/660 (0%)
Query: 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN 61
YLVWE++TVV+PNFG+GPT+RLL+GL+G AE RI+A+MGPSGSGKSTLLD+LAGRL+GN
Sbjct: 24 YLVWEDLTVVLPNFGNGPTKRLLHGLSGCAEAGRIMAIMGPSGSGKSTLLDSLAGRLAGN 83
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V+MTGNVLLNGKKRRLDYGGVAYVTQE+++LGTLTV+ET++YSAHLRLPS+M EE+ ++
Sbjct: 84 VIMTGNVLLNGKKRRLDYGGVAYVTQEDVLLGTLTVKETLSYSAHLRLPSSMTREEVDEI 143
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+E I EMGL+DC+DRL+GNWH RGISGGEKKR+SIALEIL+RP+LLFLDEPTSGLDSA+
Sbjct: 144 VEGTIMEMGLQDCSDRLVGNWHLRGISGGEKKRVSIALEILSRPRLLFLDEPTSGLDSAS 203
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
AFFV L+NIA DGR +ISSIHQPSSEVFALFDDLF+LSGGET+Y GEAK A FF EA
Sbjct: 204 AFFVTHTLRNIARDGRIVISSIHQPSSEVFALFDDLFMLSGGETIYSGEAKKAVEFFDEA 263
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
GFPCP+RRNPSDHFLRCINSDFDVVT L SQR E Q+ P+ NL T+EIK +L++K
Sbjct: 264 GFPCPSRRNPSDHFLRCINSDFDVVTATLKGSQRKYEIQST-DPLMNLATAEIKAMLVRK 322
Query: 302 YRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLR 361
Y+ SEYA RAR+RIQ IS+IEGL + + GSQA+WWKQLS LT+RSS+NMSRD GYYWLR
Sbjct: 323 YKLSEYANRARARIQEISTIEGLVSEXERGSQARWWKQLSTLTRRSSVNMSRDIGYYWLR 382
Query: 362 IAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRE 421
+ IY ++SVCVG+I++DVGT YT+I ARG+C F+SGFMTFMSIGGFPSFIEEM+VF RE
Sbjct: 383 VIIYTVVSVCVGTIYFDVGTGYTSILARGACGGFVSGFMTFMSIGGFPSFIEEMKVFYRE 442
Query: 422 RLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAV 481
RLNGHYG+ V+ILSNFLSSLPFL MS TT+I YY VK +PG H+ + L L SSIAV
Sbjct: 443 RLNGHYGILVFILSNFLSSLPFLIGMSLTTTTIIYYTVKLQPGFLHYTFGFLTLLSSIAV 502
Query: 482 IESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWA 541
+ES MM++AS+VPN+L G++ GAG +GIMMMTSG+FRL+PDIPK WRYPI+YINYGAWA
Sbjct: 503 VESIMMIVASLVPNFLLGMVTGAGIIGIMMMTSGFFRLLPDIPKPVWRYPISYINYGAWA 562
Query: 542 LQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIF 601
LQGAYKN+LIGLEFD PKLKG+ IL T+LG+ +D SKWWDL VV ILISYRV+F
Sbjct: 563 LQGAYKNELIGLEFDPPFPGEPKLKGEHILTTILGVRMDHSKWWDLTAVVIILISYRVLF 622
Query: 602 FAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSLSSQEGLNSPIH 661
F ILK RE+ SP+F +Y KRTLHHL+KRPSFRK P FPSKRHQ L SLSSQEGLNSP+H
Sbjct: 623 FTILKLRERTSPLFRRLYTKRTLHHLEKRPSFRKKPSFPSKRHQTLSSLSSQEGLNSPLH 682
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544349|ref|XP_003540615.1| PREDICTED: ABC transporter G family member 15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/661 (71%), Positives = 568/661 (85%), Gaps = 2/661 (0%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
MYLVWE++TVVVPNFG+G TRRLL+GL+G+AEP RI+A+MGPSGSGKSTLLDALAGRLS
Sbjct: 30 MYLVWEDLTVVVPNFGNGHTRRLLDGLSGFAEPNRIMAIMGPSGSGKSTLLDALAGRLSR 89
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
NV+M+GNVLLNGKKRRLDYG VAYVTQE+I+LGTLTVRETI+YSA+LRLPS+M EE+
Sbjct: 90 NVIMSGNVLLNGKKRRLDYGVVAYVTQEDIVLGTLTVRETISYSANLRLPSSMTKEEVNG 149
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+IE I EMGL+DC DRLIGNWH RGISGGEKKRLSIALEILTRP LLFLDEPTSGLDSA
Sbjct: 150 IIEGTIMEMGLQDCGDRLIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSA 209
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
+A+FV + L+N+ HDG+T+ISSIHQPSSEVFALFDDLFLLSGG+T+YFG AK A FFA+
Sbjct: 210 SAYFVAQTLRNLGHDGKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGPAKKAVEFFAK 269
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIK 300
AGFPCP+RRNPSDHFLRCINSDFD VT +M QR+ E + +L T+ IK LI+
Sbjct: 270 AGFPCPSRRNPSDHFLRCINSDFDAVTTTMMACQRVHEEMSI--TTGSLSTAAIKATLIE 327
Query: 301 KYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWL 360
KYR SE+AT AR+RI+ ISSIEG EF+ K+ +AKWWKQLS LT+RS +NMSRD GYYW+
Sbjct: 328 KYRWSEHATTARARIKEISSIEGHEFESKSNCEAKWWKQLSTLTRRSFVNMSRDVGYYWI 387
Query: 361 RIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSR 420
RI IY+ LS+ VG+IFY+VG++Y AI+ARG+C AFISGFMTFMSIGGFPSFIEEM+VF +
Sbjct: 388 RITIYVALSLSVGTIFYEVGSSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYK 447
Query: 421 ERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIA 480
ERLNG+YGV VYILSNFLSS PF+ MS AT +ITYYMV+FR SH++Y LDL IA
Sbjct: 448 ERLNGYYGVGVYILSNFLSSFPFVAVMSIATGTITYYMVRFRTEFSHYVYICLDLIGCIA 507
Query: 481 VIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540
V+ES MM+IAS+VPN+L G+IIGAGY+G+MMMT+GYFR IPD+PK+FWRYPI+YINYGAW
Sbjct: 508 VVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRQIPDLPKIFWRYPISYINYGAW 567
Query: 541 ALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVI 600
LQGA+KND+IG+EFD ++ G KLKG++ILKTMLG+ ++ SKWWDLA V+ IL+ RV+
Sbjct: 568 GLQGAFKNDMIGMEFDPLEPGGTKLKGEIILKTMLGIRVEISKWWDLAAVMIILVLLRVL 627
Query: 601 FFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSLSSQEGLNSPI 660
FF ILKF+E+A+P +S+YA++TL ++KRPSFRK P FPSK HQ LH LSSQEGLNSPI
Sbjct: 628 FFVILKFKERAAPFLYSIYARQTLQRIKKRPSFRKGPSFPSKPHQSLHPLSSQEGLNSPI 687
Query: 661 H 661
H
Sbjct: 688 H 688
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538483|ref|XP_003537733.1| PREDICTED: ABC transporter G family member 15-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/682 (70%), Positives = 570/682 (83%), Gaps = 21/682 (3%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
MYLVWE++TVVVPNFG+G TRRLL+GL+GYAEP RI+A+MGPSGSGKSTLLDALAGRLS
Sbjct: 34 MYLVWEDLTVVVPNFGNGHTRRLLDGLSGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSR 93
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
NV+M+GNVLLNGKKRRLDYG VAYVTQE+IMLGTLTVRETI+YSA+LRLPS M EE+ D
Sbjct: 94 NVIMSGNVLLNGKKRRLDYGVVAYVTQEDIMLGTLTVRETISYSANLRLPSTMTKEEVND 153
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+IE I EMGL+DCADRL+GNWH RGISGGEKKRLSIALEILTRP LLFLDEPTSGLDSA
Sbjct: 154 IIEGTIMEMGLQDCADRLVGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSA 213
Query: 181 AAFFVVKILKNIAHDGR-TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFA 239
+A+FV + L+N+ HDG+ T+ISSIHQPSSEVFALFDDLFLLSGG+T+YFG A+ A FFA
Sbjct: 214 SAYFVAQTLRNLGHDGKSTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGPAQKAVEFFA 273
Query: 240 EAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRI--CETQN---------------- 281
+AGFPCP+RRNPSDHFLRCINSDFD VT +M QR+ C + N
Sbjct: 274 KAGFPCPSRRNPSDHFLRCINSDFDAVTTTMMACQRVHVCMSNNLFYLYSHKFHNYYLST 333
Query: 282 --PLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQ 339
+ +L T+ IK LI+KYR SE+AT AR+RI+ IS+ EG F+ K+ +AKWWKQ
Sbjct: 334 SEEMSITGSLSTAAIKATLIEKYRWSEHATTARARIKEISTTEGHGFESKSKCEAKWWKQ 393
Query: 340 LSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGF 399
LS LT+RS +NMSRD GYYW+RI IY+ LS+ VG+IFY VG++Y AI+ARG+C AFISGF
Sbjct: 394 LSTLTRRSVVNMSRDVGYYWIRITIYVALSLSVGTIFYGVGSSYRAIFARGACGAFISGF 453
Query: 400 MTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMV 459
MTFMSIGGFPSFIEEM+VF +ERLNG+YGV VYILSNFLSS PF+ MS AT +ITYYMV
Sbjct: 454 MTFMSIGGFPSFIEEMKVFYKERLNGYYGVGVYILSNFLSSFPFVAVMSIATGTITYYMV 513
Query: 460 KFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRL 519
KFR SH++Y LDL IAV+ES MM+IAS+VPN+L G+IIGAGY+G+MMMT+GYFR
Sbjct: 514 KFRTEFSHYVYICLDLIGCIAVVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRQ 573
Query: 520 IPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNL 579
IPD+PK+FWRYPI+YINYGAW LQGA+KND+IG+EFD+++ GPKLKG++ILKTMLG+ +
Sbjct: 574 IPDLPKIFWRYPISYINYGAWGLQGAFKNDMIGMEFDSLEPGGPKLKGEIILKTMLGIRV 633
Query: 580 DRSKWWDLAVVVAILISYRVIFFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPF 639
D SKWWDL V+ IL+ RV+FF ILKF+E+A+P +S+YA++TL ++KRPSFRK P F
Sbjct: 634 DISKWWDLVAVMIILVLLRVLFFFILKFKERAAPFLYSIYARQTLQRIKKRPSFRKGPSF 693
Query: 640 PSKRHQVLHSLSSQEGLNSPIH 661
PSKRHQ LH LSSQEGLNSPIH
Sbjct: 694 PSKRHQSLHPLSSQEGLNSPIH 715
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054952|ref|XP_002298392.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222845650|gb|EEE83197.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/662 (71%), Positives = 555/662 (83%), Gaps = 4/662 (0%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
MYLVWE +TVV+PNFGSGPTRRLL GL GYAEP +I+A+MGPSGSGKSTLLDALAGRLSG
Sbjct: 3 MYLVWEALTVVLPNFGSGPTRRLLKGLNGYAEPGKIMAIMGPSGSGKSTLLDALAGRLSG 62
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
NV+MTGNVLLNGK RRLDYGG AYVTQEN +LGTLTVRET+ YSAHLRLPS+M EI D
Sbjct: 63 NVLMTGNVLLNGKNRRLDYGGGAYVTQENTLLGTLTVRETLTYSAHLRLPSSMAKAEIDD 122
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
++E I EMGL++C+DRLIGNWH RGISGGEKKRLSIALE L RPQLLFLDEPTSGLDSA
Sbjct: 123 IVEGTIMEMGLQECSDRLIGNWHLRGISGGEKKRLSIALETLIRPQLLFLDEPTSGLDSA 182
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
AAFFV++ L+NIAHDGRT+ISS+HQPSSEVF LFDDLFLLS GE VYFGEAK A FFAE
Sbjct: 183 AAFFVIQTLRNIAHDGRTVISSVHQPSSEVFTLFDDLFLLSAGEAVYFGEAKMAVEFFAE 242
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIK 300
AGF CP+RRNPSDHFLRCINSDFD+VT LM S R E Q P P+ NLPT+ IK L+K
Sbjct: 243 AGFSCPSRRNPSDHFLRCINSDFDLVTATLMGSHR--EIQIPSDPLANLPTAAIKASLVK 300
Query: 301 KYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWL 360
KY S +A +AR+RIQ I +I+GL + +QA WWKQLS LT+RS +NM RD GYY +
Sbjct: 301 KYISSNHAVKARARIQQILAIKGLVINIRGENQANWWKQLSTLTKRSFINMWRDLGYYRV 360
Query: 361 RIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSR 420
RI +YI+LS+CVG++F DVG YTAI A G+C F+SGFMTFMS+GGFPSFIEE++VF +
Sbjct: 361 RIIVYILLSICVGTMFLDVGKGYTAILAHGACGGFLSGFMTFMSVGGFPSFIEELKVFYK 420
Query: 421 ERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIA 480
ERLNG+YGVAVY +SNFLSS P+LT MSF T+SITYYMVKFR S+F+Y + L SSIA
Sbjct: 421 ERLNGYYGVAVYTMSNFLSSFPYLTVMSFGTSSITYYMVKFRSEFSNFLYVFMALLSSIA 480
Query: 481 VIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540
+ESCMM IAS+VPNYL G +IG+GY+GI+MMTSG+FRL+PDIPKVFWRYPI+YIN+GAW
Sbjct: 481 TVESCMMTIASLVPNYLMGFVIGSGYIGILMMTSGFFRLLPDIPKVFWRYPISYINFGAW 540
Query: 541 ALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVI 600
LQGAYKND+IGLEFD + GPKLKG+ +L T+LG++LD SKWWDLA VV ILI++R++
Sbjct: 541 GLQGAYKNDMIGLEFDPLVPGGPKLKGEEVLTTVLGISLDHSKWWDLAAVVLILIAFRLL 600
Query: 601 FFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKM--PPFPSKRHQVLHSLSSQEGLNS 658
FFAILKF+E+ PVF + AKRTL L+KRPSF K PFPS R+Q +SLSSQEGL+S
Sbjct: 601 FFAILKFKERILPVFRKLCAKRTLKQLKKRPSFTKTSYSPFPSIRNQPAYSLSSQEGLSS 660
Query: 659 PI 660
P+
Sbjct: 661 PV 662
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 661 | ||||||
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 1.0 | 0.974 | 0.682 | 2.7e-258 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.998 | 0.955 | 0.659 | 8.4e-248 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.998 | 0.960 | 0.657 | 9.9e-245 | |
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.934 | 0.879 | 0.557 | 5.4e-189 | |
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 0.897 | 0.812 | 0.345 | 2e-97 | |
| CGD|CAL0002254 | 579 | orf19.3120 [Candida albicans ( | 0.390 | 0.445 | 0.396 | 8.7e-78 | |
| UNIPROTKB|Q5A0X6 | 579 | CaO19.10632 "Putative uncharac | 0.390 | 0.445 | 0.396 | 8.7e-78 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.367 | 0.306 | 0.433 | 2.4e-73 | |
| TAIR|locus:2173184 | 727 | ABCG6 "ATP-binding cassette G6 | 0.771 | 0.701 | 0.329 | 3.7e-70 | |
| UNIPROTKB|F1PPV0 | 689 | ABCG1 "Uncharacterized protein | 0.859 | 0.824 | 0.310 | 2.6e-69 |
| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2486 (880.2 bits), Expect = 2.7e-258, P = 2.7e-258
Identities = 458/671 (68%), Positives = 565/671 (84%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
MY+ WE++TVV+PNFG G T+RLLNG+ G EP RILA+MGPSGSGKSTLLDALAGRL+G
Sbjct: 8 MYVAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAG 67
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
NVVM+G VL+NGKKRRLD+G AYVTQE+++LGTLTVRE+I+YSAHLRLPS + EEI+D
Sbjct: 68 NVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISD 127
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
++E IT+MGLE+C+DR IGNWH RGISGGEKKRLSIALE+LT+P LLFLDEPTSGLDSA
Sbjct: 128 IVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSA 187
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
+AFFVV+IL+NIA G+T++SSIHQPS EVFALFDDL LLSGGETVYFGEA+SA FF E
Sbjct: 188 SAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGE 247
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRIC----------ETQNPLGPIRNLP 290
AGFPCP+RRNPSDHFLRC+NSDFD VT L+ES+RI ET N L P+ ++P
Sbjct: 248 AGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIP 307
Query: 291 TSEIKGILIKKYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLN 350
T+EI+ L++K++CS YA +R+RIQ I+SI G+ +RK GSQ WWKQL ILTQRS +N
Sbjct: 308 TAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQRSFIN 367
Query: 351 MSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPS 410
MSRD GYYW+RIA+YI+LS+CVGSIF++VG N+T + + +C F++GFMTFMSIGGF S
Sbjct: 368 MSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQS 427
Query: 411 FIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIY 470
FIEEM+VFSRERLNGHYGVAVY +SN LSSLPF+ M +T+SIT YMV+F+ G SHF Y
Sbjct: 428 FIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 487
Query: 471 AGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRY 530
LDL +I +ESCMMMIAS+VPN+L G+++GAGY+GIM++++G+FR PD+P VFWRY
Sbjct: 488 NCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRY 547
Query: 531 PIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVV 590
P++YINYGAWALQGAYKN++IG+E+D+ PK+KG++IL+T+LG+N + SKW DLAVV
Sbjct: 548 PVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVV 607
Query: 591 VAILISYRVIFFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKRHQVLHSL 650
+ ILI YR+ FFAILKFREK PV H +Y KRTL H+QKRPSFR+M PFPS+R+ V H+L
Sbjct: 608 MMILIGYRIAFFAILKFREKVFPVIHMLYTKRTLSHIQKRPSFRRMTPFPSRRYPVHHAL 667
Query: 651 SSQEGLNSPIH 661
SSQEGLNSP+H
Sbjct: 668 SSQEGLNSPLH 678
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2387 (845.3 bits), Expect = 8.4e-248, P = 8.4e-248
Identities = 440/667 (65%), Positives = 551/667 (82%)
Query: 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN 61
YL WE++TVV+PNF GPTRRLL L GYAEP RI+A+MGPSGSGKSTLLD+LAGRL+ N
Sbjct: 24 YLAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLARN 83
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
VVMTGN+LLNGKK RLDYG VAYVTQE+++LGTLTVRETI YSAHLRLPS+M+ EE++D+
Sbjct: 84 VVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSDI 143
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+E I E+GL+DC+DR+IGNWH RG+SGGE+KR+SIALEILTRPQ+LFLDEPTSGLDSA+
Sbjct: 144 VEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSAS 203
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
AFFV++ L+NIA DGRT+ISS+HQPSSEVFALFDDLFLLS GE+VYFGEAKSA FFAE+
Sbjct: 204 AFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAVEFFAES 263
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
GFPCP +RNPSDHFLRCINSDFD VT L SQRI ET P+ NL TS IK L++
Sbjct: 264 GFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATSVIKARLVEN 323
Query: 302 YRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLR 361
Y+ S+YA A+SRI+ +S+IEGLE + + GS+A WWKQL LT RS +NM RD GYYW R
Sbjct: 324 YKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMCRDVGYYWTR 383
Query: 362 IAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRE 421
I YI++S+ VG+IFYDVG +YT+I AR SC FI+GFMTFMSIGGFPSF+EEM+VF +E
Sbjct: 384 IISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKE 443
Query: 422 RLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAV 481
RL+G+YGV+VYILSN++SS PFL A+S T +ITY +VKFRPG SH+ + L++ S++V
Sbjct: 444 RLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSV 503
Query: 482 IESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWA 541
IES MM++AS+VPN+L G+I GAG +GI+MMTSG+FRL+PD+PK+FWRYP++YI+YG+WA
Sbjct: 504 IESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPVSYISYGSWA 563
Query: 542 LQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIF 601
+QG YKND +GLEF+ + PK+ G+ +++ + G+ + SKWWDLA VVAIL+ YR++F
Sbjct: 564 IQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVVAILVCYRLLF 623
Query: 602 FAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFP-------SKRHQVLHSLSSQE 654
F +LK RE+A P ++ AKRT+ +L +RPSF++MP S+RHQ L SLSSQE
Sbjct: 624 FVVLKLRERAGPALKAIQAKRTMRNLDRRPSFKRMPSLSLSLSSMSSRRHQPLRSLSSQE 683
Query: 655 GLNSPIH 661
GLNSPIH
Sbjct: 684 GLNSPIH 690
|
|
| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2358 (835.1 bits), Expect = 9.9e-245, P = 9.9e-245
Identities = 437/665 (65%), Positives = 549/665 (82%)
Query: 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN 61
YL WE++TVV+PNF GPTRRLL+GL G+AEP RI+A+MGPSGSGKSTLLD+LAGRL+ N
Sbjct: 23 YLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLARN 82
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V+MTGN+LLNGKK RLDYG VAYVTQE+I++GTLTVRETI YSAHLRL S++ EE+ D+
Sbjct: 83 VIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVNDI 142
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+E I E+GL+DCADR+IGNWH RG+SGGE+KR+S+ALEILTRPQ+LFLDEPTSGLDSA+
Sbjct: 143 VEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSAS 202
Query: 182 AFFVVKILKNIAHDG-RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
AFFV++ L+NIA DG RT++SSIHQPSSEVFALFDDLFLLS GETVYFGE+K A FFAE
Sbjct: 203 AFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEFFAE 262
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIK 300
AGFPCP +RNPSDHFLRCINSDFD VT L SQRI ET P+ NL TSEIK L++
Sbjct: 263 AGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRETPATSDPLMNLATSEIKARLVE 322
Query: 301 KYRCSEYATRARSRIQGISSIEGLE-FKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYW 359
YR S YA A+SRI+ ++SIEG + + GS+A W+KQL LT+RS +NM RD GYYW
Sbjct: 323 NYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGYYW 382
Query: 360 LRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFS 419
RI IYI++S CVG+IFYDVG +YT+I AR SC FI+GFMTFMSIGGFPSFIEEM+VF
Sbjct: 383 SRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFY 442
Query: 420 RERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSI 479
+ERL+G+YGV+VYI+SN++SS PFL A++ T SITY MVKFRPG+SH+ + L++ S+
Sbjct: 443 KERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSV 502
Query: 480 AVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGA 539
+VIES MM++AS+VPN+L G+I GAG +GI+MMTSG+FRL+PD+PKVFWRYPI++++YG+
Sbjct: 503 SVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMSYGS 562
Query: 540 WALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRV 599
WA+QGAYKND +GLEFD + PK+ G+ ++ + G+ + SKWWDL+ +V IL+ YR+
Sbjct: 563 WAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLILVCYRI 622
Query: 600 IFFAILKFREKASPVFHSVYAKRTLHHLQKRPSFRKMPPFPS---KRHQVLHSLSSQEGL 656
+FF +LK +E+A P ++ AKRT+ L+KRPSF+K+P S +RHQ LHSLSSQEGL
Sbjct: 623 LFFIVLKLKERAEPALKAIQAKRTMKSLKKRPSFKKVPSLSSLSSRRHQPLHSLSSQEGL 682
Query: 657 NSPIH 661
SPI+
Sbjct: 683 TSPIN 687
|
|
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1832 (650.0 bits), Expect = 5.4e-189, P = 5.4e-189
Identities = 347/622 (55%), Positives = 466/622 (74%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV 62
L W+++TV+V G G T+ +L GLTGYAEP + A+MGPSGSGKST+LDALA RL+ N
Sbjct: 50 LTWQDLTVMV-TMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAANA 108
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
++G VLLNG+K +L +G AYVTQ++ ++GTLTVRETI YSA +RLP M E ++
Sbjct: 109 FLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALV 168
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
E I EMGL+DCAD +IGNWH RGISGGEK+R+SIALEIL RP+LLFLDEPTSGLDSA+A
Sbjct: 169 ERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASA 228
Query: 183 FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAG 242
FFV + L+ ++ DGRT+I+SIHQPSSEVF LFD L+LLSGG+TVYFG+A A FFA+AG
Sbjct: 229 FFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQAG 288
Query: 243 FPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKY 302
FPCP RNPSDHFLRCINSDFD V L S ++ + P+ + T+E +L+ Y
Sbjct: 289 FPCPALRNPSDHFLRCINSDFDKVRATLKGSMKL-RFEASDDPLEKITTAEAIRLLVDYY 347
Query: 303 RCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRI 362
S+Y A+++++ IS +G GSQA + Q LT+RS +NMSRDFGYYWLR+
Sbjct: 348 HTSDYYYTAKAKVEEISQFKGTILD-SGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRL 406
Query: 363 AIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRER 422
IYI+++VC+G+I+ +VGT+Y+AI ARGSCA+F+ GF+TFMSIGGFPSF+E+M+VF RER
Sbjct: 407 LIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRER 466
Query: 423 LNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVI 482
LNGHYGVA ++++N LS+ PFL ++F + +I Y+MV PG +H+++ L L +S+ V+
Sbjct: 467 LNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVV 526
Query: 483 ESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWAL 542
ES MM IAS+VPN+L GIIIGAG GI M+ SG+FRL DIPK FWRYP++YI++ WAL
Sbjct: 527 ESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWAL 586
Query: 543 QGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFF 602
QG Y+NDL GL FD+ K+ G+ +L+ + ++L RSKW +L+V+++++I YR+IFF
Sbjct: 587 QGQYQNDLRGLTFDS-QGSAFKIPGEYVLENVFQIDLHRSKWINLSVILSMIIIYRIIFF 645
Query: 603 AILKFREKASPVFHSVYAKRTL 624
++K E +P A+R +
Sbjct: 646 IMIKTNEDVTPWVRGYIARRRM 667
|
|
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 210/608 (34%), Positives = 359/608 (59%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV 62
+ W+++TV + + +++ GYA P + +MGP+ SGKSTLL ALAGRL +
Sbjct: 114 IAWKDLTVTMKGKRKY-SDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSA 172
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
M G V +NG K + YG +V +E ++G+LTVRE + YSA L+LP + + V+
Sbjct: 173 KMYGEVFVNGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKR--SVV 230
Query: 123 EEAITEMGLEDCADRLIG-NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
E+AI M L D A++LIG + + +G+ GE++R+SIA E++ RP +LF+DEP LDS +
Sbjct: 231 EDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVS 290
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
A ++ LK +A G T++ +I+Q S+EVF LFD + LLS G T++FGE + F+ A
Sbjct: 291 ALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 350
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
GFPCP ++PSDHFLR IN+DFD + + Q + + N+ T+ L
Sbjct: 351 GFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQ---DDNGDFSAV-NMDTAVAIRTLEAT 406
Query: 302 YRCSEYATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLR 361
Y+ S A + I ++ EG + K K + A ++++LT RS L MSR++ YYWLR
Sbjct: 407 YKSSADADSVEAMIIKLTEREGTQLKSKGKAGAA--TRVAVLTWRSLLVMSREWKYYWLR 464
Query: 362 IAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRE 421
+ +Y+IL++ +G+++ +G + +++ R + F + + I G PS ++E++++ E
Sbjct: 465 LILYMILTLSIGTLYSGLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSE 524
Query: 422 RLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAV 481
N H G V++L FL S+PFL MS +++ + Y+MV R S +Y L+ + V
Sbjct: 525 ASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLV 584
Query: 482 IESCMMMIASMVPN-YLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540
E M+ IA + + Y + + + + ++ IMM+ +G+FR+ +PK W YP AYI++ +
Sbjct: 585 NEGLMLFIACIWRDVYWSTLTLISVHV-IMMLAAGHFRIRTALPKPVWTYPFAYISFHTY 643
Query: 541 ALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLD-RSKWWDLAVVVAILISYRV 599
+++G +N+ +G F A+ + + G ++ ++ D +KW ++ V++A+ YR+
Sbjct: 644 SIEGLLENEYLGEVF-AVG-EVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRL 701
Query: 600 IFFAILKF 607
+ + +L+F
Sbjct: 702 LVYVLLRF 709
|
|
| CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 8.7e-78, Sum P(2) = 8.7e-78
Identities = 107/270 (39%), Positives = 158/270 (58%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG-NVV 63
W +++ + N G T +L+ + G +LA+MGPSG GKSTLL+ LA R S +
Sbjct: 8 WSNISLTLQN---GKT--ILDDIYGSVSAGEMLAIMGPSGCGKSTLLNVLAYRTSPRSST 62
Query: 64 MTGNVLLNGKKRRLDYGGV--AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
+ G + +N ++ L+ +YV QE+ ++G+LTV ET+ YSA + ++ ++
Sbjct: 63 LEGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSAQF---AGIDKAHKKEL 119
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+ + I +GLE A IG +GISGG+K+R+SIA +I+T P +LFLDEPTSGLDS A
Sbjct: 120 VSKTIKSLGLEGQAMSKIGTPIQKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVA 179
Query: 182 AFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
+ V+ +K IA + II SIHQPS+ F LFD + LS G TVY G + +F
Sbjct: 180 SREVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNS 239
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVL 270
G P NP+++ L IN+DF + VL
Sbjct: 240 IGHTMPPYINPAEYVLDLINTDFQGDSSVL 269
|
|
| UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 8.7e-78, Sum P(2) = 8.7e-78
Identities = 107/270 (39%), Positives = 158/270 (58%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG-NVV 63
W +++ + N G T +L+ + G +LA+MGPSG GKSTLL+ LA R S +
Sbjct: 8 WSNISLTLQN---GKT--ILDDIYGSVSAGEMLAIMGPSGCGKSTLLNVLAYRTSPRSST 62
Query: 64 MTGNVLLNGKKRRLDYGGV--AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
+ G + +N ++ L+ +YV QE+ ++G+LTV ET+ YSA + ++ ++
Sbjct: 63 LEGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSAQF---AGIDKAHKKEL 119
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+ + I +GLE A IG +GISGG+K+R+SIA +I+T P +LFLDEPTSGLDS A
Sbjct: 120 VSKTIKSLGLEGQAMSKIGTPIQKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVA 179
Query: 182 AFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240
+ V+ +K IA + II SIHQPS+ F LFD + LS G TVY G + +F
Sbjct: 180 SREVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNS 239
Query: 241 AGFPCPTRRNPSDHFLRCINSDFDVVTEVL 270
G P NP+++ L IN+DF + VL
Sbjct: 240 IGHTMPPYINPAEYVLDLINTDFQGDSSVL 269
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 2.4e-73, Sum P(2) = 2.4e-73
Identities = 108/249 (43%), Positives = 165/249 (66%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY 79
++++L + G+ E I A+MGPSG+GK+TLLD LA RL N+ +G + LNG K +
Sbjct: 135 SKQILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRL--NINGSGTMYLNGNKSDFNI 192
Query: 80 GG--VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
YVTQ + ++ +LTVRET+ + A L++P ++ +E +++ I EMGL CAD
Sbjct: 193 FKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADT 252
Query: 138 LIGNWH--WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
L+G RGISGGE++R++I++E+LT P ++ LDEPTSGLD++ +F+V+ LK +A
Sbjct: 253 LVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKS 312
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHF 255
GRTII +IHQP S ++ +FD+L LL G T+Y+G+A A +F G+ C + NP+D F
Sbjct: 313 GRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFF 372
Query: 256 LRCINSDFD 264
L IN+ +
Sbjct: 373 LDLINTQVE 381
|
|
| TAIR|locus:2173184 ABCG6 "ATP-binding cassette G6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
Identities = 175/531 (32%), Positives = 276/531 (51%)
Query: 17 SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK--K 74
S T+ LLNG+TG A ILAV+G SGSGKSTL+DALA R++ + GNV LNG+
Sbjct: 102 SSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGS-LKGNVTLNGEVLN 160
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
++ AYV Q++++ LTV ET+ ++A RLP +++ + + ++ I ++GL +
Sbjct: 161 SKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKSLRVQALIDQLGLRNA 220
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
A+ +IG+ RGISGGE++R+SI ++I+ P LLFLDEPTSGLDS +A V+K+LK IA
Sbjct: 221 ANTVIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKRIAQ 280
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDH 254
G +I ++HQPS + L D L LS G+TV+ G P FFAE G P P N ++
Sbjct: 281 SGSMVIMTLHQPSYRLLRLLDRLLFLSRGQTVFSGSPAMLPRFFAEFGHPIPEHENRTEF 340
Query: 255 FLRCINSDFDVV--TEVLME-----SQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEY 307
L I T L+E QR E ++ G L E I K +
Sbjct: 341 ALDLIRELEGSAGGTRSLVEFNKGFRQRKAEPRSQTG----LSLKEAISASISKGKLVSG 396
Query: 308 ATRARSRIQGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYII 367
AT + G S + + +W +L++L +RS N R + +R+ ++
Sbjct: 397 ATTT-THSSGSSPVSTIPTFAN-----PFWVELAVLAKRSMTNSRRQPELFGIRLGAVLV 450
Query: 368 LSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHY 427
+ ++F+ + + + R C AF + P F++E +F RE Y
Sbjct: 451 TGFILATMFWQLDNSPKGVQERLGCFAFAMSTTFYTCADALPVFLQERFIFMRETAYNAY 510
Query: 428 GVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMM 487
+ Y+LS+ L +LP L +S A +IT++ V G+ F++ L + +S S +
Sbjct: 511 RRSSYVLSHSLVALPSLIILSLAFAAITFWGVGLDGGLMGFLFYFLVILASFWAGSSFVT 570
Query: 488 MIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVF-WRYPIAYINY 537
++ +VP+ + G I L ++ SG+F IP + W + I+ + Y
Sbjct: 571 FLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPGYWIWFHYISLVKY 621
|
|
| UNIPROTKB|F1PPV0 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 187/602 (31%), Positives = 317/602 (52%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG-RLSGNVVMTGNVLLNGKKRRLD- 78
+ LL G++G ++A+MGPSG+GKSTL++ LAG R +G M G VL+NG R L
Sbjct: 109 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG---MKGAVLINGLPRDLRC 165
Query: 79 YGGVA-YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
+ V+ Y+ Q++++L LTV+E + SAHL+L +E ++++E +T +GL CA+
Sbjct: 166 FRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEK--DEGRREMVKEILTALGLLSCANT 223
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
G+ +SGG++KRL+IALE++ P ++F DEPTSGLDSA+ F VV ++K +A GR
Sbjct: 224 RTGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGR 278
Query: 198 TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLR 257
+II +IHQPS+++F LFD L++LS G+ VY G+ + + + G CPT NP+D +
Sbjct: 279 SIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYHNPADFVME 338
Query: 258 CINSDFDVVTEVLMESQR--ICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRI 315
+ ++ L+ + R +C++++ P + +E+ L +R SE + + R+
Sbjct: 339 VASGEYGDQNSRLVRAVREGMCDSEHRREPGGD---AEVNPFLW--HRPSEEVKQTK-RL 392
Query: 316 QGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSI 375
QG+ + + + A Q IL +R+ L++ RD LRI +I + + +G +
Sbjct: 393 QGLRK-DSTSMEGCHSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLL 451
Query: 376 FYDVGTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIE---EMRVFSRERLNGHYGVAVY 432
+ +G + + F F+ F ++ P+ + EM VF RE LN Y + Y
Sbjct: 452 YLGIGNEAKKVLSNSGFLFFSMLFLMFAAL--MPTVLTFPLEMGVFLREHLNYWYSLKAY 509
Query: 433 ILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFI-YAGLDLTSSIAVIESCMMMIAS 491
L+ ++ +PF A SI Y+M F+ +A L +S+ V +S ++I +
Sbjct: 510 YLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSL-VAQSLGLLIGA 568
Query: 492 MVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVF-WRYPIAYINYG-AWALQGAYKND 549
+ +G +++ SG+F IP W I+Y+ YG + Y D
Sbjct: 569 ASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLD 628
Query: 550 LIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFRE 609
L ID K + IL+ L + D + D V+ IS R+I + +L+++
Sbjct: 629 REDLHC-GIDETCHFQKSEAILRE-LDVE-DAKLYLDFIVLGIFFISLRLIAYFVLRYKI 685
Query: 610 KA 611
+A
Sbjct: 686 RA 687
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9UNQ0 | ABCG2_HUMAN | No assigned EC number | 0.3065 | 0.8426 | 0.8503 | yes | no |
| Q9C8J8 | AB13G_ARATH | No assigned EC number | 0.6825 | 1.0 | 0.9749 | yes | no |
| Q5MB13 | ABCG2_MACMU | No assigned EC number | 0.3165 | 0.8608 | 0.8700 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 661 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-126 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-87 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-82 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-73 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-72 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-65 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-63 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-54 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-50 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-45 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-42 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-32 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-31 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-29 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-28 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-28 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-28 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-28 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-27 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-27 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-26 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-26 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-26 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-25 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-25 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-25 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-23 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-23 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-23 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-23 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-23 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-22 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-22 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-22 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-22 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-22 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-22 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-22 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-22 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-21 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-21 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-21 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-21 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-21 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-21 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-20 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-20 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-20 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 7e-20 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-19 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-19 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-19 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-19 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-19 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-19 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-19 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-19 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-19 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-18 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-18 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-18 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-18 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-18 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-18 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-18 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-18 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 8e-18 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-18 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-17 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-17 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-17 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-17 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-17 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-17 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-17 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-16 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-16 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-16 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-16 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-16 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-16 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-16 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-16 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-16 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-16 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-16 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-15 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-15 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-15 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-15 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-15 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-15 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-15 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-15 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-15 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-14 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-14 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-14 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-14 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-14 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-14 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-14 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-14 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-13 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-13 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-13 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-13 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-13 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-12 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-12 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-12 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-12 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-12 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-12 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-12 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-12 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-12 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 9e-12 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 9e-12 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 9e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-11 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-11 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-11 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-11 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-11 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-11 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-11 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-11 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-11 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-11 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-10 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-10 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-10 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-10 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-10 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 7e-10 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 9e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 9e-10 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 9e-10 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-09 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-09 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-09 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-09 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-09 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-09 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-08 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-08 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-08 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-08 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-08 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-08 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-07 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-07 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 9e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 9e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-06 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 7e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-06 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-05 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-05 | |
| COG3709 | 192 | COG3709, COG3709, Uncharacterized component of pho | 1e-04 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 1e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 3e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 3e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-04 | |
| COG5192 | 1077 | COG5192, BMS1, GTP-binding protein required for 40 | 6e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 7e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 0.001 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.002 | |
| TIGR02322 | 179 | TIGR02322, phosphon_PhnN, phosphonate metabolism p | 0.002 | |
| pfam13555 | 60 | pfam13555, AAA_29, P-loop containing region of AAA | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.003 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.003 | |
| cd01882 | 231 | cd01882, BMS1, Bms1, an essential GTPase, promotes | 0.003 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.003 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.003 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.003 | |
| pfam06177 | 152 | pfam06177, QueT, QueT transporter | 0.003 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.004 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-126
Identities = 185/601 (30%), Positives = 294/601 (48%), Gaps = 29/601 (4%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY 79
+ LL ++G A+P +LAVMG SG+GK+TL++ALA R V +G+VLLNG
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 80 GGV--AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
AYV Q+++ + TLTVRE + + AHLR+P + +E + ++E + +GL CA+
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 138 LIG--NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
IG +G+SGGE+KRL+ A E+LT P LLF DEPTSGLDS A+ VV++LK +A
Sbjct: 157 RIGVPGRV-KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK 215
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHF 255
G+TII +IHQPSSE+F LFD + L++ G Y G A FF++ G PCP NP+D +
Sbjct: 216 GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275
Query: 256 LRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRI 315
++ + E ++IC+ S + + T S
Sbjct: 276 VQVLAVIPGSENESRERIEKICD-------------SFAVSDIGRD---MLVNTNLWSGK 319
Query: 316 QGISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSI 375
G ++ E G A WW Q L +RS L++ RD +R+ ++ ++ +G I
Sbjct: 320 AG-GLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLI 378
Query: 376 FYDVGTNYTAIYARGSCAAFISGFMTFM-SIGGFPSFIEEMRVFSRERLNGHYGVAVYIL 434
+ G + MTF F E+ VF RE +G Y V+ Y L
Sbjct: 379 YLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFL 438
Query: 435 SNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVP 494
+ ++ LP + TSITY+M+ R G +HF+ +T V S +I+
Sbjct: 439 AKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFS 498
Query: 495 NYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVF-WRYPIAYINYGAWAL-QGAYKNDLIG 552
+ + +G ++ ++ G+F IP F W +++ YG L + +
Sbjct: 499 STSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNI 558
Query: 553 LEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWW-DLAVVVAILISYRVIFFAILKFREKA 611
A G+VIL+T ++ + + DL +V ++ +R++ + L+ R +
Sbjct: 559 ECTSANTTGPCPSSGEVILET---LSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRR 615
Query: 612 S 612
Sbjct: 616 K 616
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 285 bits (730), Expect = 5e-87
Identities = 162/465 (34%), Positives = 254/465 (54%), Gaps = 42/465 (9%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK------ 74
R +LNG+TG A P ILAV+GPSGSGKSTLL+ALAGR+ GN TG +L N +K
Sbjct: 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNN-FTGTILANNRKPTKQIL 139
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
+R +VTQ++I+ LTVRET+ + + LRLP ++ +E V E I+E+GL C
Sbjct: 140 KR-----TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
+ +IGN RGISGGE+KR+SIA E+L P LL LDEPTSGLD+ AA+ +V L ++A
Sbjct: 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDH 254
G+TI++S+HQPSS V+ +FD + +LS G ++FG+ A +F GF NP+D
Sbjct: 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314
Query: 255 FLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYR-CSEYATRARS 313
L N + ++ + E + P ++ + +L K + E + ++
Sbjct: 315 LLDLANG--------VCQTDGVSEREKP--NVKQSLVASYNTLLAPKVKAAIEMSHFPQA 364
Query: 314 RIQGISSIEGLEFKRKNGSQ-AKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCV 372
+ + S E + + + W+ Q SIL QR SL + + LR+ I ++
Sbjct: 365 NARFVGSASTKEHRSSDRISISTWFNQFSILLQR-SLKERKHESFNTLRVFQVIAAALLA 423
Query: 373 GSIFYDVGTNYTAIYARGSCAAFISGFMTFMSI--GGFPS------FIEEMRVFSRERLN 424
G +++ +++ + R G + F+SI G FPS F +E +F +ER +
Sbjct: 424 GLMWWH--SDFRDVQDR-------LGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERAS 474
Query: 425 GHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFI 469
G Y ++ Y ++ + LP + ++TY+M +P + F+
Sbjct: 475 GMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFL 519
|
Length = 659 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 8e-82
Identities = 102/231 (44%), Positives = 142/231 (61%), Gaps = 40/231 (17%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
+ L + +TV V + S ++LL ++G A+P + A+MGPSG+GKSTLL+ALAGR +G
Sbjct: 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 61 NVVMTGNVLLNGKKRRLD--YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEI 118
+ ++G VL+NG+ + YV Q++I+ TLTVRET+ ++A LR
Sbjct: 62 -LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR---------- 110
Query: 119 TDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
G+SGGE+KR+SIALE+++ P LLFLDEPTSGLD
Sbjct: 111 ---------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 179 SAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
S++A V+ +L+ +A GRTII SIHQPSSE+F LFD L LLS G +YFG
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-73
Identities = 100/229 (43%), Positives = 146/229 (63%), Gaps = 8/229 (3%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV 62
L W +V + N+ R+LN ++ + E +++A++G SGSGK+TLLDA++GR+ G
Sbjct: 4 LPWWDVGLKAKNWNK--YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG 61
Query: 63 VMTGNVLLNGKKRRLDY--GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
+G +L NG+ R+ D VAYV Q++I+L LTVRET+ Y+A LRLP ++
Sbjct: 62 TTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK 121
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+E+ + L D A IG +GISGGE++R+SIA+++L P++L LDEPTSGLDS
Sbjct: 122 RVED----VLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
A +V L +A R +I +IHQP S++F LFD + LLS GE VY G
Sbjct: 178 TALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 5e-72
Identities = 142/561 (25%), Positives = 252/561 (44%), Gaps = 59/561 (10%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVM 64
W +T V R +LN + G+ +P + A+MG SG+GK+TLL+ LA R++ V+
Sbjct: 762 WRNLTYEVKI--KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVIT 819
Query: 65 TGNVLLNGKKRRLDYG-GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIE 123
G+ L+NG+ + + YV Q+++ L T TVRE++ +SA+LR P +++ E + +E
Sbjct: 820 GGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVE 879
Query: 124 EAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLL-FLDEPTSGLDSAAA 182
E I + +E AD ++G G++ ++KRL+I +E++ +P+LL FLDEPTSGLDS A
Sbjct: 880 EVIKLLEMESYADAVVGV-PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTA 938
Query: 183 FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-GGETVYFGE----AKSAPTF 237
+ + K+++ +A G+ I+ +IHQPS+ +F FD L LL GG+TVYFG+ + + +
Sbjct: 939 WSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINY 998
Query: 238 FAEAGFP-CPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKG 296
F + G P CP NP++ L I + P +
Sbjct: 999 FEKHGAPKCPEDANPAEWMLEVIGAA---------------------------PGAHANQ 1031
Query: 297 ILIKKYRCSEYATRARSRIQGIS-SIEGLEFKRKNGSQAKW----WKQLSILTQRSSLNM 351
+ +R S ++ + + + E + +K+ W Q ++ R+
Sbjct: 1032 DYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQY 1091
Query: 352 SRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIY-ARGSCAAFISGFMTFMSIGGFPS 410
R Y + + + I ++ +G F+ VGT+ + + F + P
Sbjct: 1092 WRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQ-QYLPP 1150
Query: 411 FIEEMRVFS-RERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISH-- 467
F+ + ++ RER + + +I + +P+ I YY V F S
Sbjct: 1151 FVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTG 1210
Query: 468 -----FIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPD 522
+ L T + M+ S PN ++ + + + G
Sbjct: 1211 QVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSR 1270
Query: 523 IPKVFWRY-----PIAYINYG 538
+P FW + P Y+
Sbjct: 1271 MPG-FWIFMYRCSPFTYLVQA 1290
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 4e-65
Identities = 91/230 (39%), Positives = 131/230 (56%), Gaps = 42/230 (18%)
Query: 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN 61
L W+ + VP G R+LLN ++GY +P + A+MG SG+GK+TLLD LAGR +
Sbjct: 3 VLTWKNLNYTVP--VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG 60
Query: 62 VVMTGNVLLNGKKRRLDYG-GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
V+ TG +L+NG+ ++ YV Q+++ LTVRE + +SA LR
Sbjct: 61 VI-TGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------------ 107
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
G+S ++KRL+I +E+ +P +LFLDEPTSGLDS
Sbjct: 108 -------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL-SGGETVYFG 229
AA+ +V+ LK +A G+ I+ +IHQPS+ +F FD L LL GG+TVYFG
Sbjct: 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 2e-63
Identities = 148/576 (25%), Positives = 244/576 (42%), Gaps = 57/576 (9%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG-NVVMTGNVLLNG 72
F T +L + G +P + V+G GSG STLL +A G ++ + G + +G
Sbjct: 67 KFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG 126
Query: 73 ------KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN--------EEI 118
KK G V Y + ++ LTV ET+ ++A + P N + + I
Sbjct: 127 ITPEEIKKHY--RGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHI 184
Query: 119 TDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
DV + GL + +GN RG+SGGE+KR+SIA L ++ D T GLD
Sbjct: 185 ADVY---MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
Query: 179 SAAAFFVVKILKNIAHDGR-TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTF 237
SA A ++ LK A+ T + +I+Q S + + LFD + +L G +YFG A A +
Sbjct: 242 SATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301
Query: 238 FAEAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRIC----ETQNPLGP------IR 287
F + GF CP R+ +D FL T + ++R E + P P R
Sbjct: 302 FEKMGFKCPDRQTTAD-FL----------TSLTSPAERQIKPGYEKKVPRTPQEFETYWR 350
Query: 288 NLPTSE--IKGILIKKYRCSEYATRARSRIQGISSIEGLEFKRKNGSQAK-----WWKQL 340
N P +K I RCSE T+ R ++ + K + + Q+
Sbjct: 351 NSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAK------QSKRTRPSSPYTVSFSMQV 404
Query: 341 SILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFM 400
R+ L M + + + II+++ + S+FY++ N + Y+RG F F
Sbjct: 405 KYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFN 464
Query: 401 TFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVK 460
F S+ S E + + R Y + +++ +S +PF S I Y+MV
Sbjct: 465 AFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVN 524
Query: 461 FRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLI 520
FR F + L L + I ++ + A L + + +G+
Sbjct: 525 FRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPR 584
Query: 521 PDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFD 556
P + + ++ I Y+N A+A + N+ G F+
Sbjct: 585 PSMLG-WSKW-IYYVNPLAYAFESLMVNEFHGRRFE 618
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (509), Expect = 7e-54
Identities = 159/543 (29%), Positives = 261/543 (48%), Gaps = 61/543 (11%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG-KKRRLDYG 80
+LL +TG P + A+MG SG+GK+TL+D LAGR +G + G++ ++G K++ +
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIRISGFPKKQETFA 952
Query: 81 GVA-YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
++ Y Q +I +TVRE++ YSA LRLP ++ EE ++E + + L++ D ++
Sbjct: 953 RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV 1012
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
G G+S ++KRL+IA+E++ P ++F+DEPTSGLD+ AA V++ ++N GRT+
Sbjct: 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1072
Query: 200 ISSIHQPSSEVFALFDDLFLLS-GGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRC 258
+ +IHQPS ++F FD+L L+ GG+ +Y G P RN
Sbjct: 1073 VCTIHQPSIDIFEAFDELLLMKRGGQVIYSG----------------PLGRNSHK----- 1111
Query: 259 INSDFDVVTEVLMESQRICETQNPLGPIRNLPT--SEIK-GI-LIKKYRCSEYATRARSR 314
I F+ + V +I E NP + + + +E+K GI + Y+ S R ++
Sbjct: 1112 IIEYFEAIPGV----PKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKAL 1167
Query: 315 IQGISS----IEGLEFKRKNGSQAKW-------WKQLSILTQRSSLNMSRDFGYYWLRIA 363
++ +S+ L F + SQ+ W WKQ + N+ R F
Sbjct: 1168 VKELSTPPPGASDLYFATQY-SQSTWGQFKSCLWKQWWTYWRSPDYNLVRFF-------- 1218
Query: 364 IYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGGF----PSFIEEMRVFS 419
+ ++ VG+IF+ VGT + + + F+ I P E VF
Sbjct: 1219 FTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFY 1278
Query: 420 RERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSI 479
RER G Y Y ++ + +P++ + T I Y MV F + F + S
Sbjct: 1279 RERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338
Query: 480 AVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPK----VFWRYPIAYI 535
MM S+ PN I A + G+ + SG+F P IPK +W P+A+
Sbjct: 1339 LYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWT 1398
Query: 536 NYG 538
YG
Sbjct: 1399 VYG 1401
|
Length = 1470 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 3e-50
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 17/231 (7%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL 77
G + L+G++ EP I ++GP+G+GK+TLL LAG L +G +L+ G
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVK 71
Query: 78 D----YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
+ + YV QE + LTVRE + + A L S EE + IEE + GLED
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLED 128
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
A++ + R +SGG K+RLSIAL +L P+LL LDEPTSGLD + + ++L+ +A
Sbjct: 129 KANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183
Query: 194 HDG-RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGF 243
+G TI+ S H E L D + +L+ G+ + G + F G
Sbjct: 184 KEGGVTILLSTHI-LEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 8e-45
Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 36/216 (16%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---KKR 75
+L +G +P ++ V+G GSG STLL ALA R GNV + G++ NG K+
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77
Query: 76 RLDY-GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
Y G + YV++E++ TLTVRET+ ++ +
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------- 111
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
GN RGISGGE+KR+SIA +++R +L D T GLDS+ A ++K ++ +A
Sbjct: 112 -----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166
Query: 195 D-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
T S++Q S E++ LFD + +L G +Y+G
Sbjct: 167 VLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 1e-42
Identities = 158/579 (27%), Positives = 257/579 (44%), Gaps = 93/579 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD---- 78
+L +G +P+R+ ++GP SGK+TLL ALAG+L ++ ++G + NG RL+
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNG--YRLNEFVP 237
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLR--------LPSNMNNEEITDVIEEA----- 125
AY++Q ++ +G +TV+ET+ +SA + L E+ + EA
Sbjct: 238 RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLF 297
Query: 126 -------------ITE-----MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167
IT+ +GL+ C D ++G+ RGISGG+KKR++ I+ +
Sbjct: 298 MKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKT 357
Query: 168 LFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
LF+DE ++GLDS+ + +VK L+ I H T++ S+ QP+ E F LFDD+ LLS G+ V
Sbjct: 358 LFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417
Query: 227 YFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPI 286
Y G FF GF CP R+ +D FL+ + S D Q
Sbjct: 418 YQGPRDHILEFFESCGFKCPERKGTAD-FLQEVTSKKD---------------QEQYWAD 461
Query: 287 RNLPTSEIKGILIKKYRC---SEYATRARSRIQG--ISSIEGLEFKRKNGSQAKW-WKQL 340
RN P YR SE+A R +S G + + + F + +A + +
Sbjct: 462 RNKP-----------YRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKY 510
Query: 341 SILTQ--------RSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYAR--G 390
S+ + L M R+ Y + II++ ++F T ++ R
Sbjct: 511 SVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLR-----TEMHTRNEE 565
Query: 391 SCAAFISGFMTFMSIGGFPSF------IEEMRVFSRERLNGHYGVAVYILSNFLSSLPFL 444
A +I + M I F F I+ + VF ++R + + L FL +P
Sbjct: 566 DGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPIS 625
Query: 445 TAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGA 504
S ITYY + F P S F L + + +IAS+ + GA
Sbjct: 626 IIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGA 685
Query: 505 GYLGIMMMTSGYFRLIPDIPKVF-WRYPIAYINYGAWAL 542
L ++ + G+ +IP + W Y ++ ++YG AL
Sbjct: 686 LVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNAL 724
|
Length = 1470 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-36
Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-----KRRLDYGGVAYVTQE-N 89
+ ++GP+GSGKSTLL L G L +G VL++GK + V V Q +
Sbjct: 29 FVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85
Query: 90 IMLGTLTVRETIAYSAHLRLPSNMN--NEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147
TV E +A+ N+ EEI + +EEA+ +GLE DR +
Sbjct: 86 DQFFGPTVEEEVAFG-----LENLGLPEEEIEERVEEALELVGLEGLRDRSPFT-----L 135
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207
SGG+K+R++IA + P +L LDEPT+GLD A ++++LK + +G+TII H
Sbjct: 136 SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL- 194
Query: 208 SEVFALFDDLFLLSGGE 224
+ L D + +L G+
Sbjct: 195 DLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-33
Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRL 77
+ +L+ L+ I ++GP+GSGKSTLL LAG L +G VLL+GK L
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASL 69
Query: 78 DYGGVA----YVTQENIMLGTLTVRETIAYSAH-LRLPSNMNNEEITDVIEEAITEMGLE 132
+A YV Q LTV E + + ++E +++EEA+ +GLE
Sbjct: 70 SPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE 129
Query: 133 DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
ADR + +SGGE++R+ IA + +L LDEPTS LD A V+++L+++
Sbjct: 130 HLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 193 AHD-GRTIISSIHQPSSEVFALF--DDLFLLSGGETVYFGEAKS 233
+ G T++ +H + A D L LL G+ V G +
Sbjct: 185 NREKGLTVVMVLHDLN---LAARYADHLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 1e-32
Identities = 62/210 (29%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG----KKRRLDY 79
++ L+ I ++G +G+GK+T L L G L +G +NG R+
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAAR 74
Query: 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
+ Y Q + + LTVRE + + A L+ + EI + +E + +GL D A++
Sbjct: 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA 131
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
+SGG K++LS+A+ ++ P +L LDEPTSGLD A+ + ++ + GR+I
Sbjct: 132 RT-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSI 185
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
I + H E AL D + ++S G+ G
Sbjct: 186 ILTTHSM-DEAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-32
Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60
+ E +TV ++G+ P +L ++ E I A++GP+G+GKSTLL A+ G L
Sbjct: 3 PMIEVENLTV---SYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK- 55
Query: 61 NVVMTGNVLLNGK--KRRLDYGGVAYVTQENIMLGT--LTVRETIAYSAHLRLPS-NMNN 115
+G + + GK ++R + YV Q++ + + +TV++ + + + N
Sbjct: 56 --PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN 113
Query: 116 EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175
++ + ++EA+ +G+ED DR IG +SGG+K+R+ +A + P LL LDEP +
Sbjct: 114 KKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 176 GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223
G+D A + +LK + +G+T++ H V A FD + L+
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-31
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
+L ++ +P LA++GP+G+GKSTLL A+ G L +G++ + GK +
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERK 68
Query: 81 GVAYVTQENIMLGT--LTVRETIAYS--AHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
+ YV Q + ++VR+ + H L ++ + ++EA+ +GL + AD
Sbjct: 69 RIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-AKVDEALERVGLSELAD 127
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
R IG +SGG+++R+ +A ++ P LL LDEP +G+D + ++L+ + +G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
TI+ H V FD + LL V G
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-29
Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 18/226 (7%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLN 71
F + L ++ E + ++GP+GSGKSTLL L G L SG V++ G +
Sbjct: 11 FRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS 70
Query: 72 GKKRRLDYGGVAYVTQ--ENIMLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITE 128
K V V Q ++ L TV + +A+ +L LP EEI + + EA+
Sbjct: 71 EKSLLELRQKVGLVFQNPDD-QLFGPTVEDEVAFGLENLGLPR----EEIEERVAEALEL 125
Query: 129 MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
+GLE+ DR N +SGG+K+R++IA + P++L LDEPT+GLD ++++
Sbjct: 126 VGLEELLDRPPFN-----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL 180
Query: 189 LKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
LK + + G+TII H V D + +L G+ + G+
Sbjct: 181 LKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 8e-29
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 48/213 (22%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
R +L+ L+ E I+ ++GP+G+GKSTLL LAG L + +G +LL+GK
Sbjct: 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKD------ 62
Query: 81 GVAYVTQENIMLGTLTVRE---TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
L +L+ +E IAY +P +A+ +GL ADR
Sbjct: 63 -----------LASLSPKELARKIAY-----VP-------------QALELLGLAHLADR 93
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-G 196
+SGGE++R+ +A + P +L LDEPTS LD A ++++L+ +A + G
Sbjct: 94 PFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+T++ +H + D + LL G V G
Sbjct: 149 KTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 5/211 (2%)
Query: 339 QLSILTQRSSLNMSRD-FGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFIS 397
QL L +R L RD R+ +++++ G++F ++ T+ + G I
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPGLLFFSIL 61
Query: 398 GFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYY 457
G P FI E V RE + Y + Y+L+ L LP + I Y+
Sbjct: 62 FNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYF 121
Query: 458 MVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYF 517
MV S F L L + + IA++ P++ IG L +++ SG+F
Sbjct: 122 MVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGFF 179
Query: 518 RLIPDIPKVFWRYPIAYINYGAWALQGAYKN 548
+ +P W I Y+N +A++ N
Sbjct: 180 IPVDSMPG--WLQWIYYLNPLTYAIEALRAN 208
|
Length = 210 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 2e-28
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 28/218 (12%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGK------ 73
R L+ L+ EP LA++GPSG GK+TLL +AG R G +L++G+
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS-----GEILIDGRDVTGVP 68
Query: 74 -KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE 132
+RR + V Q+ + LTV E IA+ L+L + EI + E + +GLE
Sbjct: 69 PERR----NIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGLE 121
Query: 133 DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
+R +SGG+++R+++A + P LL LDEP S LD+ + + LK +
Sbjct: 122 GLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176
Query: 193 AHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+ G T I H E AL D + +++ G V G
Sbjct: 177 QRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 22/221 (9%)
Query: 14 NFGSGPTR-RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVL 69
+G G + + L G++ E +A++GPSGSGKSTLL+ L G SG V + G +
Sbjct: 9 TYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDI 68
Query: 70 --LNGKKR---RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE 124
L+ K+ R + + +V Q +L LT E + L + + +E + EE
Sbjct: 69 SKLSEKELAAFRRRH--IGFVFQSFNLLPDLTALENVELPLLL---AGVPKKERRERAEE 123
Query: 125 AITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184
+ +GL D + +SGG+++R++IA + P+++ DEPT LDS
Sbjct: 124 LLERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178
Query: 185 VVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224
V+++L+ + + G TI+ H P E+ D + L G+
Sbjct: 179 VMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVV 63
E+ + +FG R +L G+ ILA++GPSGSGKSTLL + G L SG V+
Sbjct: 2 ELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 64 MTGNVL--LNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
+ G + L+ + + + Q + +LTV E +A+ LR + ++ EEI ++
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP--LREHTRLSEEEIREI 116
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+ E + +GL D +SGG KKR+++A + P+LL DEPT+GLD A
Sbjct: 117 VLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171
Query: 182 AFFVVKILKNI--AHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+ + +++++ +I+ + H FA+ D + +L G+ V G
Sbjct: 172 SGVIDDLIRSLKKELGLTSIMVT-HD-LDTAFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
L+ ++ P I ++GP+G+GK+TL + ++G L SG+V+ G + +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMN-------NEEITDVIEEAITEMGLED 133
G+ Q + LTV E + +A R S + E + EE + +GL D
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
ADR G +S G+++RL IA + T P+LL LDEP +GL+ + ++++ +
Sbjct: 136 LADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR 190
Query: 194 HDGRTII 200
G T++
Sbjct: 191 ERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 8e-27
Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 18/190 (9%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73
+F +L+ L+ I+A+ G +G+GK+TL LAG + + +G++LLNGK
Sbjct: 6 SFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGK 62
Query: 74 --KRRLDYGGVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
K + + YV Q+ + L T +VRE + L + + E + ++
Sbjct: 63 PIKAKERRKSIGYVMQDVDYQLFTDSVREEL-------LLGLKELDAGNEQAETVLKDLD 115
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
L +R H +SGG+K+RL+IA +L+ LL DEPTSGLD V ++++
Sbjct: 116 LYALKER-----HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 191 NIAHDGRTII 200
+A G+ +I
Sbjct: 171 ELAAQGKAVI 180
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-27
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 17/190 (8%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLD 78
+L GL AE +LA++G +G+GKSTLL L G L SG V++ G L +K L+
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLE 65
Query: 79 Y-GGVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGLEDC 134
V V Q+ + L V + +A+ P N+ + E+ + EA+T +G
Sbjct: 66 RRQRVGLVFQDPDDQLFAADVDQDVAFG-----PLNLGLSEAEVERRVREALTAVGASGL 120
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
+R +SGGEKKR++IA + RP +L LDEPT+GLD A ++ IL+ +
Sbjct: 121 RERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 195 DGRTIISSIH 204
+G T++ S H
Sbjct: 176 EGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 9e-27
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 58/206 (28%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD 78
R L+ ++ + I+A++GP+GSGKSTLL A+AG L +G +L++GK
Sbjct: 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAK- 65
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
L +R I Y L
Sbjct: 66 -------------LPLEELRRRIGYVPQL------------------------------- 81
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
SGG+++R+++A +L P LL LDEPTSGLD A+ ++++L+ +A +GRT
Sbjct: 82 ---------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRT 132
Query: 199 IISSIHQPSSEVFALFDDLFLLSGGE 224
+I H P D + +L G+
Sbjct: 133 VIIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 105 bits (266), Expect = 2e-26
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 52/209 (24%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRR 76
+ L+ ++ E I ++GP+G+GK+TL+ + G L + +G + + GK K
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEP 68
Query: 77 LDYGG-VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
+ + Y+ +E + LTVRE +L+L
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRE------NLKL-------------------------- 96
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
SGG K+RL++A +L P+LL LDEPTSGLD + ++L+ + +
Sbjct: 97 ------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE 144
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGE 224
G+TI+ S H E L D + +L+ G
Sbjct: 145 GKTILLSSHIL-EEAERLCDRVAILNNGR 172
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 26/260 (10%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66
EVT + ++GS + + + ++ AE I ++G +G+GK+TLL +A L + +G
Sbjct: 3 EVTDLTKSYGS-KVQAVRD-VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SG 57
Query: 67 NVLLNG----KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
V ++G + + + E + LT RE + Y A L + ++ +EI I
Sbjct: 58 KVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL---NGLSRKEIKARI 114
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
E + L + DR +G S G K++++IA ++ P +L LDEPTSGLD
Sbjct: 115 AELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169
Query: 183 FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAG 242
+K + ++GR +I S H EV AL D + +L GE V G S A
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEG---SIEALDARTV 225
Query: 243 FPCPTRRNPSDHFLRCINSD 262
RN + F + +
Sbjct: 226 -----LRNLEEIFAFALKLE 240
|
Length = 245 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 23/219 (10%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL 77
R +++G+ A P + ++GP+GSGKSTLL LAG L +G V + G V L+G RR
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAG-VDLHGLSRRA 72
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-------SNMNNEEITDVIEEAITEMG 130
VA V Q++ LTVR+ +A R+P + ++ + D A+
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVD---RALARTE 126
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
L ADR +SGGE++R+ +A + P+LL LDEPT+ LD A + +++
Sbjct: 127 LSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 191 NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+A G T+++++H + + D + +L GG V G
Sbjct: 182 ELAATGVTVVAALHDLNLAA-SYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 8e-26
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 23/229 (10%)
Query: 7 EVTVVVPNFGSGPTR-RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNV 62
E+ V +G G + L + E +A++GPSGSGKSTLL+ L G SG V
Sbjct: 3 ELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62
Query: 63 VMTGNVL--LNGKKR---RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE 117
++ G L L+ K+ R + +V Q +L LTV E + + +
Sbjct: 63 LINGKDLTKLSEKELAKLRRKK--IGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGR 117
Query: 118 ITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176
EE + +GLED + +SGG+++R++IA ++ P+++ DEPT
Sbjct: 118 RKRAAEELLEVLGLEDRLLKKKPSE-----LSGGQQQRVAIARALINNPKIILADEPTGN 172
Query: 177 LDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224
LDS A V+++L+ + + G+TII H P E+ D + L G+
Sbjct: 173 LDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 24/228 (10%)
Query: 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNV 62
E +T +R L+G++ P + ++GP+G+GK+TL+ LA SG +
Sbjct: 4 ENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 63 VMTG-NVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
+ G +VL +K R + Y+ QE + TVRE + Y A L+ + ++E+
Sbjct: 57 RIDGQDVLKQPQKLR---RRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKAR 110
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
++E + + L D A + IG +SGG ++R+ IA ++ P +L +DEPT+GLD
Sbjct: 111 VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+L + D R +I S H +V +L + + +L+ G+ V+ G
Sbjct: 166 RIRFRNLLSELGED-RIVILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 29/206 (14%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLN 71
N G + L ++ I A++GPSG GKSTLL L L G VLL+
Sbjct: 7 NVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLD 65
Query: 72 GK------------KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT 119
GK +RR V V Q+ ++ + +AY LRL EE+
Sbjct: 66 GKDIYDLDVDVLELRRR-----VGMVFQKPNPF-PGSIYDNVAYG--LRLHGIKLKEELD 117
Query: 120 DVIEEAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+ +EEA+ + L ++ DRL H G+SGG+++RL +A + P++L LDEPTS LD
Sbjct: 118 ERVEEALRKAALWDEVKDRL----HALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
Query: 179 SAAAFFVVKILKNIAHDGRTIISSIH 204
+ + +++ + + TI+ H
Sbjct: 174 PISTAKIEELIAELKKE-YTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-25
Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 26/208 (12%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLS---GNVVMTGNVLLNGKK-------RRLDYGGV 82
+ + G SG+GKSTLL +AG G +V+ G VL + +K +R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR----KI 77
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
V Q+ + L VRE +A+ L+ N E ++E + +GL+ +R
Sbjct: 78 GLVFQQYALFPHLNVRENLAFG--LKRKRNR---EDRISVDELLDLLGLDHLLNRYPA-- 130
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIIS 201
+SGGEK+R+++A + +P+LL LDEP S LD A ++ LK I + +I
Sbjct: 131 ---QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIF 187
Query: 202 SIHQPSSEVFALFDDLFLLSGGETVYFG 229
H SE L D + ++ G Y G
Sbjct: 188 VTHDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 1e-23
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG-------VAY 84
I+A++GPSG+GKSTLL+ +AG +G +L+NG D+ V+
Sbjct: 23 PAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGV----DHTASPPAERPVSM 75
Query: 85 VTQENIMLGTLTVRETIAYSAH--LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
+ QEN + LTV + I L+L N E + +E A ++GL RL G
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKL-----NAEQREKVEAAAAQVGLAGFLKRLPGE- 129
Query: 143 HWRGISGGEKKRLSIALEILTRPQ-LLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTII 200
+SGG+++R+++A L R Q +L LDEP S LD A ++ ++ + + T++
Sbjct: 130 ----LSGGQRQRVALA-RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184
Query: 201 SSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAG 242
H P + + D + L G G + +
Sbjct: 185 MVTHHP-EDAARIADRVVFLDNGRIAAQGSTQE---LLSGKA 222
|
Length = 231 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-23
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 13/206 (6%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD 78
+L + E +A++GPSG GKSTLL +AG +G VLL+G+
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGP 70
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
+ YV QE+ +L LTV + +A LR S E +E + +GL D+
Sbjct: 71 GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER---AKELLELVGLAGFEDK- 126
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GR 197
+ + +SGG ++R++IA + TRP+LL LDEP LD+ + L + + +
Sbjct: 127 ---YPHQ-LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRK 182
Query: 198 TIISSIHQPSSEVFALFDDLFLLSGG 223
T++ H E L D + +LS
Sbjct: 183 TVLLVTHDV-DEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-23
Identities = 61/200 (30%), Positives = 108/200 (54%), Gaps = 16/200 (8%)
Query: 15 FGSGPTRR-LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVL 69
+G G R+ +L + P I+ + GPSGSGK+TLL L G L G++ + G L
Sbjct: 11 YGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQEL 69
Query: 70 LNGKKRRLDY--GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAIT 127
++ L + Y+ Q + +LG LT R+ + + L+ N++ +E + +
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLE 127
Query: 128 EMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
+GL D L +++ +SGG+K+R++IA ++ RP+L+ DEPT+ LDS + VV+
Sbjct: 128 AVGLGD---HL--DYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 188 ILKNIAHD-GRTIISSIHQP 206
+++ +A + G TI+ H
Sbjct: 183 LMQKLAREQGCTILIVTHDN 202
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 29/212 (13%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGK-------- 73
++ ++ + + ++GPSG GK+TLL +AG + S G +LL+G+
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS-----GEILLDGEDITDVPPE 75
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
KR + V Q + +TV E +A+ L++ + EI +EEA+ +GLE
Sbjct: 76 KR-----PIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEG 128
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
ADR +SGG+++R+++A ++ P++L LDEP S LD+ + K LK +
Sbjct: 129 FADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ 183
Query: 194 HD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224
+ G T + H E A+ D + +++ G
Sbjct: 184 RELGITFVYVTH-DQEEALAMSDRIAVMNDGR 214
|
Length = 352 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 6e-23
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 22/224 (9%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLN 71
FG R +L+G+ ILA++G SGSGKSTLL + G L G +++ G +
Sbjct: 18 FGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74
Query: 72 GKKRRLD--YGGVAYVTQENIMLGTLTVRETIAYS--AHLRLPSNMNNEEITDVIEEAIT 127
+ L + + Q+ + +LTV E +A+ H +LP I +++ +
Sbjct: 75 LSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLP----ESLIRELVLMKLE 130
Query: 128 EMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
+GL AD +SGG +KR+++A I P+LLFLDEPTSGLD +A +
Sbjct: 131 LVGLRGAAADLYPSE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185
Query: 187 KILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
++++ + G T+I H S + + D + +L+ G+ + G
Sbjct: 186 ELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-22
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 48 STLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYS 104
STLL + G L SG +++ G R+L + V Q+ + LTVRE + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF- 59
Query: 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTR 164
+ ++E EEA+ +GL D DR +SGG+K+R++IA +L +
Sbjct: 60 -------GLRDKEADARAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARALLKK 108
Query: 165 PQLLFLDEPTS 175
P+LL LDEPT+
Sbjct: 109 PKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 2e-22
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 57/209 (27%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDY 79
+ +L ++ +P +A++GPSGSGKSTLL L +G +L++G R LD
Sbjct: 15 KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDL 71
Query: 80 GG----VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
+AYV Q+ + T+RE I
Sbjct: 72 ESLRKNIAYVPQDPFLFSG-TIRENI---------------------------------- 96
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
+SGG+++R++IA +L P +L LDE TS LD +++ L+ +A
Sbjct: 97 -----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K 144
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGE 224
G+T+I H+ S+ D + +L G
Sbjct: 145 GKTVIVIAHRLST--IRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 28/200 (14%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGNVVMTG--NVLLNGK 73
+ +L+ L E ++ A++G SGSGKSTLL+ + G L SG V + G LN K
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEKFDSGQVYLNGQETPPLNSK 68
Query: 74 K----RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP---SNMNNEEITDVIEEAI 126
K RR G Y+ Q ++ TV E +L L ++ +E + +EA+
Sbjct: 69 KASKFRREKLG---YLFQNFALIENETVEE------NLDLGLKYKKLSKKEKREKKKEAL 119
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
++GL + I +SGGE++R+++A IL P L+ DEPT LD V+
Sbjct: 120 EKVGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVL 174
Query: 187 KILKNIAHDGRTIISSIHQP 206
+L + +G+TII H P
Sbjct: 175 DLLLELNDEGKTIIIVTHDP 194
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 3e-22
Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 25/192 (13%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
R L +GL+ L + GP+GSGK+TLL +AG L G + L+G
Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDV 71
Query: 81 G--VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
Y+ N M LTV E + + A EE+ I A+ +GL A
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFL-----GGEELD--IAAALEAVGLAPLAHLP 124
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI--AH-- 194
G +S G+K+R+++A +++ + LDEPT+ LD+AA V + + AH
Sbjct: 125 FGY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA----VALFAELIRAHLA 175
Query: 195 DGRTIISSIHQP 206
G +I++ H P
Sbjct: 176 QGGIVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 4e-22
Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 26/225 (11%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVL--LNGKKRRLDYGGVAYVT 86
E + ++GPSG GKSTLL +AG SG +++ G + L +KR G+A V
Sbjct: 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR-----GIAMVF 81
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146
Q + +TV E IA+ LR + EI ++E +GLE +R
Sbjct: 82 QNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQ 133
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQ 205
+SGG+++R+++A ++ +P++ LDEP S LD+ + +K + G T I H
Sbjct: 134 LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD 193
Query: 206 PSSEVFALFDDLFLLSGGETVYFGEA-----KSAPTFFAE-AGFP 244
E L D + +++ G G + A F A G P
Sbjct: 194 Q-VEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSP 237
|
Length = 338 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 5e-22
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYGGV 82
L+ ++ E I ++GP+G+GK+T + + G + + +G VL +GK +
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNRI 72
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
Y+ +E + + V + + Y A L+ + EE I+E + + L + A++ +
Sbjct: 73 GYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV--- 126
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202
+S G ++++ ++ P+LL LDEP SGLD + +++ +A G+T+I S
Sbjct: 127 --EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFG 229
HQ V L D + LL+ G V +G
Sbjct: 185 THQ-MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-22
Identities = 55/199 (27%), Positives = 82/199 (41%), Gaps = 58/199 (29%)
Query: 36 ILAVMGPSGSGKSTLLDALAG---------RLSGNVVMTGNVLLNGKKRRLDYGGVAYVT 86
I+A++GPSGSGKSTLL +AG + G + L +RR + V
Sbjct: 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR-----IGMVF 82
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146
Q+ + LTV E IA G
Sbjct: 83 QDFALFPHLTVLENIAL------------------------------------------G 100
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIHQ 205
+SGG+++R+++A + P +L LDEPTS LD V +LK++ A G T++ H
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
Query: 206 PSSEVFALFDDLFLLSGGE 224
E L D + +L G+
Sbjct: 161 L-DEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 7e-22
Identities = 54/217 (24%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73
+G +R+L+ ++ + + I +GP+G+GK+T + + G + + +G + +GK
Sbjct: 9 TYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGK 62
Query: 74 KRRLDYGGVAYV---TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
+ + + + + LT RE + A L I+E + +G
Sbjct: 63 SYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR-------IDEVLDVVG 115
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
L+D A + + + S G K+RL IAL +L P LL LDEPT+GLD + +++
Sbjct: 116 LKDSAKKKVKGF-----SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELIL 170
Query: 191 NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227
++ G T++ S H SE+ + D + +++ G+ +
Sbjct: 171 SLRDQGITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 7e-22
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM 91
E +A++GPSG GKSTLL +AG +G VL++G+ YV Q++ +
Sbjct: 28 EEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGYVFQQDAL 84
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151
L LTV + +A L+ + E + EE + +GL + +SGG
Sbjct: 85 LPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGM 136
Query: 152 KKRLSIALEILTRPQLLFLDEPTSGLD 178
++R+++A + P +L LDEP S LD
Sbjct: 137 RQRVALARALAVDPDVLLLDEPFSALD 163
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 8e-22
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNV 62
+ ++V P G + + L+ ++ + L ++G SGSGKSTL A+ G SG++
Sbjct: 5 KNLSVSFPTGGG--SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62
Query: 63 VMTGNVLLNGKKRRLDYGG--VAYVTQENIMLG---TLTVRETIA--YSAHLRLPSNMNN 115
+ G LL +R + V Q + M +T+ E IA H +L
Sbjct: 63 IFDGKDLLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPRMTIGEQIAEPLRIHGKLS---KK 118
Query: 116 EEITDVIEEAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174
E + + + +GL E+ +R H +SGG+++R++IA + P+LL DEPT
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYP---HE--LSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 175 SGLDSAAAFFVVKILKNI 192
S LD + ++ +LK +
Sbjct: 174 SALDVSVQAQILDLLKKL 191
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 8e-22
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 46/219 (21%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGNV 62
E+ + +FG +L G+ + ++ ++GPSGSGKSTLL + L SG +
Sbjct: 2 EIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEEPDSGTI 57
Query: 63 VMTGNVLLNGKK-----RRLDYGGVAYVTQ-----------ENIMLGTLTVRETIAYSAH 106
++ G L + KK R+ V V Q ENI L + V+
Sbjct: 58 IIDGLKLTDDKKNINELRQ----KVGMVFQQFNLFPHLTVLENITLAPIKVK-------- 105
Query: 107 LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ 166
M+ E + E + ++GL D AD +SGG+++R++IA + P+
Sbjct: 106 -----GMSKAEAEERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALAMNPK 155
Query: 167 LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205
++ DEPTS LD V+ ++K++A +G T++ H+
Sbjct: 156 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 9e-22
Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 22/225 (9%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNV- 62
V+ + +G T+ L+ ++ A+ RI+ +GP+G+GKST + + G L SG+V
Sbjct: 4 RVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ 60
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHL-RLPSNMNNEEITDV 121
V +VL N K+ + + G Y+ + N + + VRE + + A + + + + + ++
Sbjct: 61 VCGEDVLQNPKEVQRNIG---YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEM 117
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
IE GL + IG +S G ++R+ +A ++ P++L LDEPT+GLD
Sbjct: 118 IELV----GLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQ 168
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
+ ++KNI D +TII S H EV A+ D + +++ G+ V
Sbjct: 169 LVEIRNVIKNIGKD-KTIILSTHI-MQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-21
Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 26/215 (12%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---------KK 74
++G++ +P + ++GP+G+GK+T L LAG L + G ++G +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEAR 77
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
RRL G V+ + LT RE + Y A L + +E+T +EE +G+E+
Sbjct: 78 RRL---GF--VSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEEL 129
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
DR +G G S G +++++IA ++ P +L LDEPT+GLD A + + ++ +
Sbjct: 130 LDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
G+ I+ S H EV L D + +L G VY G
Sbjct: 185 LGKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 3e-21
Identities = 72/217 (33%), Positives = 119/217 (54%), Gaps = 20/217 (9%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDY- 79
L G+ AE ++A++GP+G+GKSTL G L SG V++ G + KK L+
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 80 GGVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGLEDCAD 136
V V Q + L TV E +A+ P N+ + EE+ ++EA+ +G+E +
Sbjct: 78 KTVGIVFQNPDDQLFAPTVEEDVAFG-----PLNLGLSKEEVEKRVKEALKAVGMEGFEN 132
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
+ + +SGG+KKR++IA + +P+++ LDEPTSGLD A ++K+L ++ +G
Sbjct: 133 KPPHH-----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG 187
Query: 197 RTIISSIHQPS-SEVFALFDDLFLLSGGETVYFGEAK 232
TII S H V+A D ++++S G+ + G K
Sbjct: 188 ITIIISTHDVDLVPVYA--DKVYVMSDGKIIKEGTPK 222
|
Length = 275 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-21
Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGN 61
E V+ G+G L+ ++ I ++G SG+GKSTLL L L SG+
Sbjct: 5 ENVSKTFGQTGTGTVT-ALDDVSLEIPKGEIFGIIGYSGAGKSTLL-RLINLLERPTSGS 62
Query: 62 VVMTGNVL--LNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT 119
V + G L L+ + R + + Q +L + TV E +A+ L L + + EI
Sbjct: 63 VFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP--LEL-AGVPKAEIK 119
Query: 120 DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
+ E + +GL D ADR +SGG+K+R++IA + P++L DE TS LD
Sbjct: 120 QRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 180 AAAFFVVKILKNI-AHDGRTIISSIHQPSSEVFALF-DDLFLLSGGETVYFGEAK 232
++++LK+I G TI+ H+ EV D + +L G V G
Sbjct: 175 ETTQSILELLKDINRELGLTIVLITHEM--EVVKRICDRVAVLDQGRLVEEGTVS 227
|
Length = 339 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-21
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 26/215 (12%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SG 60
L + V+V P R L ++ P +A++GPSG+GKSTLL+ L G + +
Sbjct: 322 LEFSGVSVAYPG-----RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 61 NVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
+ V L +A+V Q + T+ E I + +
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLAR---------PDASDA 426
Query: 121 VIEEAITEMGLEDCA-------DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173
I EA+ GL++ D IG G+SGG+ +RL++A L LL LDEP
Sbjct: 427 EIREALERAGLDEFVAALPQGLDTPIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485
Query: 174 TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
T+ LD+ V++ L+ +A GRT++ H+ +
Sbjct: 486 TAHLDAETEAEVLEALRALA-QGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 4e-21
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 31/221 (14%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK--------- 74
L G++ I+A++G +G+GK+TLL + G L +G++ +G+
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHER 72
Query: 75 -RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM--GL 131
R G+ YV + + LTV E + A+ R + +E + E+ L
Sbjct: 73 ARA----GIGYVPEGRRIFPELTVEENLLLGAYAR-----RRAKRKARLER-VYELFPRL 122
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
++ +L G +SGGE++ L+IA +++RP+LL LDEP+ GL + + ++
Sbjct: 123 KERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177
Query: 192 IAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ +G TI+ + Q + + D ++L G V G A
Sbjct: 178 LRDEGVTIL-LVEQNARFALEIADRAYVLERGRVVLEGTAA 217
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 6e-21
Identities = 57/209 (27%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---S 59
+ + VT PN L+G+ + ++GPSG+GKSTLL + S
Sbjct: 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS 55
Query: 60 GNVVMTGNVLLNGKKRRLDY----GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN 115
G + + G + + + R + Y GV + Q+ +L V E +A++ L + + +
Sbjct: 56 GTIRVNGQDVSDLRGRAIPYLRRKIGVVF--QDFRLLPDRNVYENVAFA--LEV-TGVPP 110
Query: 116 EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175
EI + A+ +GL L +SGGE++R++IA I+ P +L DEPT
Sbjct: 111 REIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVNSPTILIADEPTG 165
Query: 176 GLDSAAAFFVVKILKNIAHDGRTIISSIH 204
LD + ++ +LK I G T++ + H
Sbjct: 166 NLDPDTTWEIMNLLKKINKAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 7e-21
Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 46/229 (20%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK------- 73
R LL+ ++ P ++A++GP+G+GKSTLL AL+G LS + +G V LNG+
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSP 71
Query: 74 ----KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM 129
+RR A + Q + + TV E +A R P ++ E ++ A+ ++
Sbjct: 72 AELARRR------AVLPQHSSLSFPFTVEEVVAMG---RAPHGLSRAEDDALVAAALAQV 122
Query: 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILT-------RPQLLFLDEPTSGLDSAAA 182
L A R +SGGE++R+ +A +L P+ L LDEPTS LD A
Sbjct: 123 DLAHLAGRDY-----PQLSGGEQQRVQLA-RVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 183 FFVVKILKNIAHD-GRTIISSIH---QPSSEVFALF-DDLFLLSGGETV 226
V+++ + +AH+ G +I +H A + D + LL G V
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLHDLNLA-----ARYADRIVLLHQGRLV 220
|
Length = 258 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 7e-21
Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 24/229 (10%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGK------ 73
+ ++G++ + IL ++G SGSGKS L A+ G L ++ G +L +GK
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 74 -KRRLDYGG--VAYVTQE--NIMLGTLTVRETI--AYSAHLRLPSNMNNEEITDVIEEAI 126
K G +A + Q+ + +T+ + I H + ++ +E + E +
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG---LSKKEAKERAIELL 135
Query: 127 TEMGLEDCADRLIGNW-HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185
+G+ D +R + ++ H +SGG ++R+ IA+ + P+LL DEPT+ LD +
Sbjct: 136 ELVGIPD-PERRLKSYPHE--LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQI 192
Query: 186 VKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ +LK + + G +I H V + D + ++ G V G +
Sbjct: 193 LDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGRIVEEGPVEE 240
|
Length = 316 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 8e-21
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73
+F + L+ L + ++ A++G SG+GKSTLL+ L G L+ G + +NG
Sbjct: 327 SFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGI 383
Query: 74 KRR-LD----YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE 128
R L +++V+Q + T+RE I + + ++EEI +++A
Sbjct: 384 DLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDEEIIAALDQA--- 434
Query: 129 MGLEDCA------DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
GL + D +IG G+SGG+ +RL++A +L+ LL LDEPT+ LD+
Sbjct: 435 -GLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492
Query: 183 FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG---ETVYFGEAKSAPTFFA 239
+++ L+ +A +T++ H+ E A D + +L G E E +A
Sbjct: 493 QIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSEKQGLYA 549
Query: 240 E 240
Sbjct: 550 N 550
|
Length = 559 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 23/192 (11%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
+N ++ P I+ ++GP+G+GK+TL + + G SG V+ G + R+
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 81 GVAYVTQ-----------ENIMLGTLTVRETIAYSAHLRLPSNMNNE-EITDVIEEAITE 128
G+A Q EN+ +G + S L P E E + E +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVG---AHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 129 MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
+GL + ADR GN +S G+++RL IA + T+P+LL LDEP +GL+ + ++
Sbjct: 137 VGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 189 LKNIAHDGRTII 200
++ + G I
Sbjct: 192 IRELRDRGGVTI 203
|
Length = 250 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVV 63
EV + + +G ++ L ++ P +A++GPSG+GKSTLL L G + SG+V+
Sbjct: 2 EVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 64 MTGNVLLNGKKRRLD--YGGVAYVTQENIMLGTLTVRETI-----AYSAHLR-LPSNMNN 115
+ G + K + L + + Q+ ++ L+V E + + R L
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 116 EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175
EE + A+ +GL D A + +SGG+++R++IA ++ +P+L+ DEP +
Sbjct: 120 EEKQRALA-ALERVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVA 173
Query: 176 GLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFAL--FDDLFLLSGGETVYFG 229
LD A++ V+ +LK I +G T+I S+HQ A D + L G V+ G
Sbjct: 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVD---LAREYADRIVGLKDGRIVFDG 227
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 2e-20
Identities = 59/233 (25%), Positives = 104/233 (44%), Gaps = 29/233 (12%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-- 58
M + V FG+ L+ ++ + ++A++GPSG+GKSTLL +AG
Sbjct: 1 MSIRINNVKKRFGAFGA------LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP 54
Query: 59 -SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE 117
+G + + G VL + + V +V Q + +TV + IA+ + E
Sbjct: 55 DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF-GLKVRKERPSEAE 113
Query: 118 ITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGL 177
I +EE + + LE ADR + +SGG+++R+++A + P++L LDEP L
Sbjct: 114 IRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 178 DSAAAFFVVKILKNIAHDGRTIISSIHQPS-------SEVFALFDDLFLLSGG 223
D K+ K + R + + + E L D + +L+ G
Sbjct: 169 D-------AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGK---- 73
+++L L+ P A++GP+G+GK+TLL L G SG+V + G G+
Sbjct: 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE 103
Query: 74 -KRRLDYGGVAYVTQENIMLGTLTVRETI--AYSAHLRLPSNMNNEEITDVIEEAITEMG 130
++R+ G+ TVR+ + + A + + E + + +G
Sbjct: 104 LRKRI---GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLG 160
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
+ ADR + +S GE++R+ IA ++ P+LL LDEP GLD A ++ L+
Sbjct: 161 AKHLADRP-----FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE 215
Query: 191 NIA--HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230
+A ++ H E+ F LL GE V G+
Sbjct: 216 ELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-20
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 17/189 (8%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL 77
R L GL+ L V GP+G GK+TLL LAG L SG V G L ++R
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQRDE 70
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
+ + Y+ + L+ E + + A + + IE+A+ +GL D
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT-------IEDALAAVGLTGFEDL 123
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
+S G+++RL++A L+R L LDEPT+ LD A + +L+ G
Sbjct: 124 PAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG 178
Query: 198 TIISSIHQP 206
++ + HQ
Sbjct: 179 IVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 3e-20
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 16/188 (8%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTG-NVLLNGKKRRL 77
+ G++ I ++GP+G+GK+T + L L SG + G +V+ ++ R
Sbjct: 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRR 73
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
G V Q+ + LT E + A L + E + I+E + +GL + ADR
Sbjct: 74 RIG---IVFQDLSVDDELTGWENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADR 127
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDG 196
L+ + SGG ++RL IA ++ RP++LFLDEPT GLD V + ++ + G
Sbjct: 128 LVKTY-----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182
Query: 197 RTIISSIH 204
TI+ + H
Sbjct: 183 MTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 7e-20
Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK--------KRRLDYGGVAYVTQE 88
++GP+GSGKS LL+ +AG + + +G +LLNGK KR ++YV Q
Sbjct: 28 FVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR-----DISYVPQN 79
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGI 147
+ +TV + IAY R E V+E I EM G++ +R +
Sbjct: 80 YALFPHMTVYKNIAYGLKKRKVDKKEIER--KVLE--IAEMLGIDHLLNR-----KPETL 130
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207
SGGE++R++IA ++ P++L LDEP S LD + + LK I + + +
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 208 SEVFALFDDLFLLSGGETVYFGE 230
E +AL D + ++ G+ + G+
Sbjct: 191 EEAWALADKVAIMLNGKLIQVGK 213
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 7e-20
Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 43/231 (18%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--------SGNVVMTG 66
F P R +L ++ + +A++GPSGSGKST+L RL SG++++ G
Sbjct: 8 FAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTIL-----RLLFRFYDVSSGSILIDG 62
Query: 67 ----NVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV- 121
V L+ +R + V Q+ ++ T+ I Y R + +EE+ +
Sbjct: 63 QDIREVTLDSLRRA-----IGVVPQDTVLFND-TIGYNIRYG---RP--DATDEEVIEAA 111
Query: 122 ----IEEAITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTS 175
I + I M D D ++G RG +SGGEK+R++IA IL P +L LDE TS
Sbjct: 112 KAAQIHDKI--MRFPDGYDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATS 166
Query: 176 GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
LD+ + L++++ GRT I H+ S+ V A D + +L G V
Sbjct: 167 ALDTHTEREIQAALRDVS-KGRTTIVIAHRLSTIVNA--DKIIVLKDGRIV 214
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 1e-19
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG-------VAYVT 86
I A++GPSGSGKSTLL+ +AG +G VL+NG +D V+ +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLING----VDVTAAPPADRPVSMLF 76
Query: 87 QENIMLGTLTVRETIAY--SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
QEN + LTV + + S L+L E IE A+ +GL RL G
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLKL-----TAEDRQAIEVALARVGLAGLEKRLPGE--- 128
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSI 203
+SGGE++R+++A ++ +L LDEP + LD A ++ ++ ++ A T++
Sbjct: 129 --LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVT 186
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFG 229
HQP + L + L G G
Sbjct: 187 HQP-EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 41/220 (18%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGN--VLLNGKKRRLDYGGVAYVTQ--- 87
++A++GPSG+GKSTLL +L G + SG ++ G L GK+ R + + Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91
Query: 88 --------ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA---- 135
EN++LG L Y++ R + ++E +A+ +G+ D A
Sbjct: 92 LVPRLSVLENVLLGRL------GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA 145
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-H 194
L SGG+++R++IA ++ +P+++ DEP + LD +A V+ ILK+I
Sbjct: 146 STL---------SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE 196
Query: 195 DGRTIISSIHQPSSEVFAL--FDDLFLLSGGETVYFGEAK 232
DG T+I ++HQ A D + L G V+ G A
Sbjct: 197 DGITVIVNLHQVD---LAKKYADRIIGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 58/192 (30%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVLLNGKKR 75
T+ +L+ ++ I +++GP+G+GKSTLL ++ RL SG + + G L + +
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 76 RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMN--NEEITDVIEEAITEMGLED 133
L ++ + QEN + LTVR+ + + R P + +E +I EAI + LED
Sbjct: 72 ELAKK-LSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLED 127
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
+DR + +SGG+++R IA+ + + LDEP + LD + ++KIL+ +A
Sbjct: 128 LSDRYLDE-----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 194 HD-GRTIISSIH 204
+ G+TI+ +H
Sbjct: 183 DELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 2e-19
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 13/186 (6%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDY- 79
L ++ + + + GPSG+GKSTLL + G G +++ G+ L K R + +
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 80 -GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
+ V Q+ +L TV E +A + EI + E + +GL+ A L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL 134
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
+SGGE++R++IA I+ +P +L DEPT LD ++ ++++ + I G T
Sbjct: 135 PSQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 199 IISSIH 204
++ + H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 7 EVTVVVPNFGSGPTR-RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNV 62
V + +G G LN ++ E L ++G SGSGKSTL LAG SG++
Sbjct: 5 SVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQ--ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
++ G L K+ + Y V V Q + + TV ++ +
Sbjct: 65 LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR-----PHGLSKSQQ 119
Query: 121 VIEEAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
I E + ++GL DR +SGG+++R++IA ++ P+LL LDEPTS LD
Sbjct: 120 RIAELLDQVGLPPSFLDRRPHE-----LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ ++ +L + + I + V + D + ++ G+ V G +
Sbjct: 175 SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227
|
Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-19
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RL-SGNVVMTGNVL--LNGKKR-R 76
+L G+ + +A++GPSGSGKSTLL LAG SG V + G L L+ R
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
L V +V Q ++ LT E +A LP + E D A +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALLEAVGLGK 138
Query: 137 RLIGNWHWRG-ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
RL H+ +SGGE++R+++A RP +LF DEPT LD A + +L + +
Sbjct: 139 RL---THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195
Query: 196 -GRTIISSIHQPS 207
G T++ H P
Sbjct: 196 RGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 3e-19
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 27/234 (11%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQE 88
+ ++++G SG GKSTLL+ ++G SG V++ G + R+ V Q
Sbjct: 9 QQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM------VVFQN 62
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
+L LTVRE IA + LP +++ E ++EE I +GL + AD+ G +S
Sbjct: 63 YSLLPWLTVRENIALAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQ-----LS 116
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
GG K+R++IA + RP++L LDEP LD+ + + L I + R + +
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176
Query: 209 EVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRR-----NPSDHFLR 257
E L D + +L+ G G+ P FP P R +PS + LR
Sbjct: 177 EALLLSDRVVMLTNGPAANIGQILEVP-------FPRPRDRLEVVEDPSYYDLR 223
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 3e-19
Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 25/201 (12%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVL--LNG 72
L+ ++ + L + GPSG+GK+TLL L G L G V + G + L G
Sbjct: 12 PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRG 71
Query: 73 K-----KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLR-LPSNMNNEEITDVIEEAI 126
+ +RR+ GV + Q+ +L TV E +A +R EI + A+
Sbjct: 72 RQLPLLRRRI---GVVF--QDFRLLPDRTVYENVALPLEVRGKKER----EIQRRVGAAL 122
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
++GLE AD +SGGE++R++IA I+ P LL DEPT LD + ++
Sbjct: 123 RQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177
Query: 187 KILKNIAHDGRTIISSIHQPS 207
+LK + G T+I + H S
Sbjct: 178 DLLKRLNKRGTTVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 4e-19
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 39/208 (18%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK---- 74
P +L GL+ P + +A++G SG GKST++ +L R +G +LL+G
Sbjct: 14 PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERFYD--PTSGEILLDGVDIRDL 70
Query: 75 -----RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE- 128
R + V+QE ++ T+ E I Y + + +EEA +
Sbjct: 71 NLRWLRSQ----IGLVSQEPVLFDG-TIAENIRYGK---------PDATDEEVEEAAKKA 116
Query: 129 ------MGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
M L D D L+G RG +SGG+K+R++IA +L P++L LDE TS LD+
Sbjct: 117 NIHDFIMSLPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSS 208
+ V + L A GRT I H+ S+
Sbjct: 174 SEKLVQEALDR-AMKGRTTIVIAHRLST 200
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 5e-19
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 19/217 (8%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRR 76
++ LN + A +AV+GP+G+GKSTL G L SG+V++ G + R
Sbjct: 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIRE 75
Query: 77 L-DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGLED 133
+ + G+ + ++ + TV + IA+ P N+ + E + + A+ +GLE+
Sbjct: 76 VRKFVGLVFQNPDDQIFSP-TVEQDIAFG-----PINLGLDEETVAHRVSSALHMLGLEE 129
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
DR+ + +SGGEKKR++IA I PQ+L LDEPT+GLD ++ L ++
Sbjct: 130 LRDRVPHH-----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLP 184
Query: 194 HD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
G T+I S HQ V + D ++++ G V +G
Sbjct: 185 ETYGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 5e-19
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 21/223 (9%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74
F + +L ++ EP +A++GPSGSGKSTL+ L +G +L++G
Sbjct: 336 FSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGID 392
Query: 75 -RRLDYGG----VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE- 128
R + + V+Q+ ++ T+RE IA + +EEI + ++ A
Sbjct: 393 IRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGR-----PDATDEEIEEALKLANAHE 446
Query: 129 --MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
L D D ++G +SGG+++RL+IA +L P +L LDE TS LD+ +
Sbjct: 447 FIANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
LK + GRT + H+ S+ A D + +L G V G
Sbjct: 506 DALKKL-LKGRTTLIIAHRLSTIKNA--DRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 7e-19
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK---- 74
P LL + I+ +MGPSG GKSTLL + G L+G TG + LN ++
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 75 ---RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131
+R + + Q+ ++ L+V + + ++ LP+ + + A+ GL
Sbjct: 73 PAAQR----QIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGL 124
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+ + +SGG++ R+++ +L +P+ L LDEP S LD A
Sbjct: 125 DGAFHQDPAT-----LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 7e-19
Identities = 61/195 (31%), Positives = 104/195 (53%), Gaps = 20/195 (10%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL---SGNVVMTG-NVLLNGKKRRLDYGGVAYVTQENIM 91
I+A+MGPSG+GKSTLL+ +AG + SG++ + + +R V+ + QEN +
Sbjct: 26 IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR----PVSMLFQENNL 81
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151
LTVR+ I H P N E + + +A ++G+ D DRL +SGG+
Sbjct: 82 FAHLTVRQNIGLGLH---PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ-----LSGGQ 133
Query: 152 KKRLSIALEILTRPQ-LLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSE 209
++R+++A L RP +L LDEP S LD ++ ++K + + RT++ H S+
Sbjct: 134 RQRVALA-RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SD 191
Query: 210 VFALFDDLFLLSGGE 224
A+ + ++S G+
Sbjct: 192 ARAIASQIAVVSQGK 206
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 18/187 (9%)
Query: 31 AEPARILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVL--LNGKKRRLDYGGVAY 84
P +A++GPSG+GKSTLL + RL SG++++ G + L GKK R +
Sbjct: 25 INPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83
Query: 85 VTQENIMLGTLTVRETI-----AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
+ Q ++ LTV E + Y R +EE + A+ +GL D A +
Sbjct: 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA 143
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRT 198
+SGG+++R++IA + +P L+ DEP + LD + V+ LK I DG T
Sbjct: 144 DQ-----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGIT 198
Query: 199 IISSIHQ 205
+I ++HQ
Sbjct: 199 VIINLHQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 1e-18
Identities = 63/202 (31%), Positives = 98/202 (48%), Gaps = 31/202 (15%)
Query: 38 AVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLD----YGGVAYVTQENIML 92
A++G GSGKSTLL LAG +G+VLL+G R+LD + YV Q+ + L
Sbjct: 34 AIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDIRQLDPADLRRNIGYVPQD-VTL 89
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDV-IEEAITEMGLEDCA-------DRLIGNWHW 144
T+R+ I + D I A G+ D D IG
Sbjct: 90 FYGTLRDNIT----------LGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGE-RG 138
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
RG+SGG+++ +++A +L P +L LDEPTS +D + + + L+ + D +T+I H
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITH 197
Query: 205 QPSSEVFALFDDLFLLSGGETV 226
+PS + L D + ++ G V
Sbjct: 198 RPS--LLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 14/185 (7%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
LN L+ Y +P + ++GP+G+GK+T++D + G+ G+V+ G L + ++
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 81 GVAYVTQENIMLGTLTVRET--IAYSAHLRLPSNMN---NEEITDVIEEAITEMGLEDCA 135
G+ Q+ + LTV E +A + +++ + E D IEE + +GL D A
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA 137
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
DRL G +S G+K+ L I + ++ P+LL LDEP +G+ ++LK++A
Sbjct: 138 DRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA-G 191
Query: 196 GRTII 200
+++
Sbjct: 192 KHSVV 196
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 20/194 (10%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGNV 62
EV + +G+ RR L+ ++ P R +A++GP+G+GKSTL +L RL G +
Sbjct: 3 EVAGLSFRYGA---RRALDDVSFTVRPGRFVALLGPNGAGKSTLF-SLLTRLYVAQEGQI 58
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLR-LPSNMNNEEITDV 121
+ G+ L + L GV V Q+ + L+VR+ + Y A L L I
Sbjct: 59 SVAGHDLRRAPRAALARLGV--VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARI--- 113
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
E + +GL + AD + R ++GG ++R+ IA +L RP LL LDEPT GLD A+
Sbjct: 114 -AELLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Query: 182 AFFVVKILKNIAHD 195
+ ++ +A D
Sbjct: 168 RAAITAHVRALARD 181
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 19/210 (9%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT---GNVLLNGKK 74
G R L ++ ++ V+GPSG GK+TLL+ +AG +T G++ LNG++
Sbjct: 15 GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG------FVTPSRGSIQLNGRR 68
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
V Q +L L V + +A+ LR + + ++ + + +GLE
Sbjct: 69 IEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGA 125
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
+ I W +SGG ++R+ IA + PQLL LDEP LD+ + ++L ++
Sbjct: 126 EHKYI--WQ---LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 195 D-GRTIISSIHQPSSEVFALFDDLFLLSGG 223
+ G+ ++ H +F L L +LS G
Sbjct: 181 ETGKQVLLITHDIEEALF-LATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 2e-18
Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 27/220 (12%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK--------KR 75
L G++ E I+A++G +G+GK+TLL + G + +G ++ +G+ +R
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHER 75
Query: 76 -RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM--GLE 132
RL G+AYV + + LTV E + A+ R + E +EE + E+ L+
Sbjct: 76 ARL---GIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEE-VYELFPRLK 127
Query: 133 DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
+ ++ G +SGGE++ L+IA +++RP+LL LDEP+ GL + + +K +
Sbjct: 128 ERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182
Query: 193 AHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+G I + Q + + D ++L G V G A
Sbjct: 183 RKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAA 222
|
Length = 237 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-18
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 33/184 (17%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM- 91
L + G SG+GK++LL ALAG L SG + M + + ++ Q +
Sbjct: 422 LLITGESGAGKTSLLRALAG-LWPWGSGRISMPADS------------ALLFLPQRPYLP 468
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITD-VIEEAITEMGLEDCADRL--IGNWHWRGIS 148
GTL RE + Y + +D + + ++GL D A+RL W R +S
Sbjct: 469 QGTL--REALCYP--------NAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD-RVLS 517
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
GGE++RL+ A +L +P+ +FLDE TS LD + ++LK D T+IS H+P+
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA-TVISVGHRPTL 576
Query: 209 EVFA 212
F
Sbjct: 577 WNFH 580
|
Length = 604 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 3e-18
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 34/189 (17%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVLLNGKKRRLDYGGVAYVTQ 87
E ++ ++GPSGSGKSTLL L G L SG++ + G + + K V V Q
Sbjct: 26 EKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQ 84
Query: 88 -----------ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
EN+ L + V+ ++ E + E + ++GL D AD
Sbjct: 85 QFNLFPHLTVLENVTLAPVKVK-------------KLSKAEAREKALELLEKVGLADKAD 131
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
+ +SGG+++R++IA + P+++ DEPTS LD V+ ++K++A +G
Sbjct: 132 A-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186
Query: 197 RTIISSIHQ 205
T+I H+
Sbjct: 187 MTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGK----- 73
RRLL+G++ P +LA++GP+G+GKSTLL AL+G L V V LN
Sbjct: 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEEL 73
Query: 74 -KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD--VIEEAITEMG 130
+ R A + Q + + TV+E + R+P E D + +A+
Sbjct: 74 ARHR------AVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATD 124
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIA--LEILTRPQL----LFLDEPTSGLDSAAAFF 184
L A R R +SGGE++R+ +A L L P LFLDEPTS LD A
Sbjct: 125 LSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH 179
Query: 185 VVKILKNIAHDGRTIISSIHQPSSEVFALF-DDLFLLSGG 223
+++ + +A +G +++ +H + + A + D + LL G
Sbjct: 180 TLRLARQLAREGGAVLAVLHDLN--LAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 3e-18
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 27/224 (12%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK------- 73
+L+ L+ E +LA++G SG GK+TLL A+AG + +TG + + +
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPP 76
Query: 74 -KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHL-RLPSNMNNEEITDVIEEAITEMGL 131
KR G+A + Q + L V + +A+ ++P E + D A+ +GL
Sbjct: 77 HKR-----GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD----ALKLVGL 127
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
D A L +SGG ++R++IA I P +L LDEP S LD+ + + +
Sbjct: 128 GDAAAHLPAQ-----LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182
Query: 192 IAHD--GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
+ + TI+ H + L D ++ G GE ++
Sbjct: 183 LHEELPELTILCVTHD-QDDALTLADKAGIMKDGRLAAHGEPQA 225
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 7 EVTVVVPNFGSGPTR-RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGN 61
E+ V FG + L ++ I ++G SG+GKSTL+ + G L SG+
Sbjct: 3 ELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERPTSGS 61
Query: 62 VVMTG--NVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT 119
V++ G LL+GK+ R + + Q +L + TV E +A L + + + EI
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP--LEI-AGVPKAEIE 118
Query: 120 DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
+ + E + +GLED AD +SGG+K+R+ IA + P++L DE TS LD
Sbjct: 119 ERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Query: 180 AAAFFVVKILKNIAHD-GRTIISSIHQ 205
++ +L++I + G TI+ H+
Sbjct: 174 ETTQSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 26/197 (13%)
Query: 11 VVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70
G+ +R LNGL+ + V+G +G+GKSTLL+A+AG L +G +L+
Sbjct: 9 KTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILI 65
Query: 71 NG-------KKRRLDYGGVAYVTQENIMLGT---LTVRETIAYSA---HLRLPSNMNNEE 117
+G +R + +A V Q + + GT LT+ E +A + R S+ NE
Sbjct: 66 DGVDVTKKSVAKRANL--LARVFQ-DPLAGTAPELTIEENLALAESRGKKRGLSSALNER 122
Query: 118 ITDVIEEAITEM--GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175
E + + GLE+ IG +SGG+++ LS+ + L P++L LDE T+
Sbjct: 123 RRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTA 177
Query: 176 GLDSAAAFFVVKILKNI 192
LD A FV+++ I
Sbjct: 178 ALDPKTAEFVMELTAKI 194
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 13/212 (6%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDYGGV 82
++ ++ P I ++GP+G+GK+T + G L G + NG + +
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRI 74
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
Y+ +E + +TV + + Y A L+ M EI ++ + + + + I
Sbjct: 75 GYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI--- 128
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202
+ +S G ++++ ++ P+LL LDEP SGLD + + + +G TII S
Sbjct: 129 --KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234
H+ V L D L +L G+TV +G +
Sbjct: 187 SHR-MEHVEELCDRLLMLKKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-18
Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-------- 74
+L L+ P +A++G SGSGKSTLL L G G +LL+G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS 544
Query: 75 -RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MG 130
RR V YV Q+ + ++RE IA +EEI + + A E
Sbjct: 545 LRRQ----VGYVLQDPFLFSG-SIRENIALGN-----PEATDEEIIEAAQLAGAHEFIEN 594
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
L D +G +SGG+++RL++A +L++P++L LDE TS LD +++ L
Sbjct: 595 LPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 191 NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223
I GRT+I H+ S D + +L G
Sbjct: 654 QILQ-GRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 6e-18
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 15/191 (7%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR---LSGNVVMTGNVL--LNGKKR-R 76
+L G+ + +A++G SGSGKSTLL LAG SG V + G L ++ + R +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
L V +V Q +++ TL E + A LR ++ + + + + ++GL D
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLD 141
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD- 195
L +SGGE++R+++A RP +LF DEPT LD + +L ++ +
Sbjct: 142 HLPAQ-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH 196
Query: 196 GRTIISSIHQP 206
G T+I H
Sbjct: 197 GTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 7e-18
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL 77
R L + L+ L + GP+G+GK+TLL LAG L +G V G + N ++
Sbjct: 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYH 74
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
+ Y+ + + LT E +L + I EA+ ++GL D
Sbjct: 75 QA--LLYLGHQPGIKTELTALE------NLHFWQRFHGSGNAATIWEALAQVGLAGLEDL 126
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI----A 193
+G +S G+++R+++A L+ L LDEP + LD V +L + A
Sbjct: 127 PVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG----VALLTALMAAHA 177
Query: 194 HDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225
G ++ + HQP A L L + T
Sbjct: 178 AQGGIVLLTTHQPLPIASAQIRRLDLTATKAT 209
|
Length = 209 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 8e-18
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 29/189 (15%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG------GVAYV 85
+A++GPSGSGKSTL++ + R V +G +L++G R DY + V
Sbjct: 26 PAGETVALVGPSGSGKSTLVNLIP-RFYD--VDSGRILIDGHDVR-DYTLASLRRQIGLV 81
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-----ITEMGLEDCADRLIG 140
+Q+ + TV E IAY EE+ + A I E+ + D +IG
Sbjct: 82 SQDVFLFND-TVAENIAYGRP-----GATREEVEEAARAANAHEFIMEL--PEGYDTVIG 133
Query: 141 NWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
RG+ SGG+++R++IA +L P +L LDE TS LD+ + V L+ + + RT
Sbjct: 134 E---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN-RT 189
Query: 199 IISSIHQPS 207
H+ S
Sbjct: 190 TFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 8e-18
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 28/160 (17%)
Query: 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-------KRRLDYGGVA 83
E +A++GPSG+GKSTLL+ +AG L+ +G++ LNG+ RR V+
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRR----PVS 74
Query: 84 YVTQENIMLGTLTVRETIAYSAH--LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
+ QEN + LTV + I + L+L N + + +MG+ED RL G
Sbjct: 75 MLFQENNLFSHLTVAQNIGLGLNPGLKL-----NAAQREKLHAIARQMGIEDLLARLPGQ 129
Query: 142 WHWRGISGGEKKRLSIALEILTRPQ-LLFLDEPTSGLDSA 180
+SGG+++R+++A L R Q +L LDEP S LD A
Sbjct: 130 -----LSGGQRQRVALA-RCLVREQPILLLDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 8e-18
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 19/189 (10%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRL 77
R L +GL+ L V GP+GSGK+TLL LAG L+G V++ G L +R
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL--DFQRDS 70
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
G+ Y+ + TL+V E +LR ++ + +EEA+ +GL DR
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLE------NLRFWHADHS---DEQVEEALARVGLNGFEDR 121
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
+ +S G+++R+++A +L+ L LDEPT+ LD A + + G
Sbjct: 122 PVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176
Query: 198 TIISSIHQP 206
++ + HQ
Sbjct: 177 MVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 1e-17
Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 22/223 (9%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK----- 73
P R LL+ L+ ++ ++G +GSGKSTLL L GR G +LL+ +
Sbjct: 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GR--HQPPSEGEILLDAQPLESW 78
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIA---YSAHLRLPSNMNNEEITDVIEEAITEMG 130
+ VAY+ Q+ +TVRE +A Y H L + +EEAI+ +G
Sbjct: 79 SSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL--GRFGAADREKVEEAISLVG 136
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
L+ A RL+ + +SGGE++R IA+ + + L LDEPTS LD A V+ ++
Sbjct: 137 LKPLAHRLVDS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191
Query: 191 NIAHD-GRTIISSIHQPSSEVFALF-DDLFLLSGGETVYFGEA 231
++ + G T+I+ +H + + A + D L L GGE + G
Sbjct: 192 RLSQERGLTVIAVLHDIN--MAARYCDYLVALRGGEMIAQGTP 232
|
Length = 265 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 1e-17
Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 36 ILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML 92
++A++GPSGSGKSTLL +AG SG + + G R + +V Q +
Sbjct: 28 LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDR---KIGFVFQHYALF 84
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152
LTVR+ IA+ +R +I +EE + + LE DR +SGG++
Sbjct: 85 KHLTVRDNIAFGLEIRKH---PKAKIKARVEELLELVQLEGLGDRYPNQ-----LSGGQR 136
Query: 153 KRLSIALEILTRPQLLFLDEPTSGLDS 179
+R+++A + PQ+L LDEP LD+
Sbjct: 137 QRVALARALAVEPQVLLLDEPFGALDA 163
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-17
Identities = 62/203 (30%), Positives = 93/203 (45%), Gaps = 25/203 (12%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74
G +L+G++ P +A++GPSGSGKSTLL LAG L + G V L+G
Sbjct: 342 AGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP---LQGEVTLDGVP 398
Query: 75 RRLDYGG-----VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM 129
V+ Q+ + T TVRE + + + +EE+ +E
Sbjct: 399 VSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLAR-----PDATDEELWAALERV---- 448
Query: 130 GLEDCADRLIGNWH-WRG-----ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
GL D L G +SGGE++RL++A +L +L LDEPT LD+ A
Sbjct: 449 GLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETAD 508
Query: 184 FVVKILKNIAHDGRTIISSIHQP 206
+++ L A GRT++ H
Sbjct: 509 ELLEDL-LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 18/199 (9%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---- 73
+ +L G+ + + A+MGP+GSGKSTL + G V G +L +G+
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEGEILFDGEDILE 72
Query: 74 -----KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE 128
+ R G+ Q + + +T + + + + R + E ++E
Sbjct: 73 LSPDERARA---GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAEL 129
Query: 129 MGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
+GL E+ +R + G SGGEKKR I +L P+L LDEP SGLD A V +
Sbjct: 130 LGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAE 185
Query: 188 ILKNIAHDGRTIISSIHQP 206
+ + +GR ++ H
Sbjct: 186 GINALREEGRGVLIITHYQ 204
|
Length = 251 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-17
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-------- 73
RL L+ IL ++GP+G+GKSTLL +AG L G +G++ G+
Sbjct: 11 RLGP-LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAA 65
Query: 74 ---KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
+ R AY++Q+ + V + + L P E + + E +G
Sbjct: 66 ELARHR------AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALG 115
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEIL-----TRP--QLLFLDEPTSGLDSAAAF 183
L+D R + +SGGE +R+ +A +L P QLL LDEP + LD A
Sbjct: 116 LDDKLGRSVNQ-----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170
Query: 184 FVVKILKNIAHDGRTIISSIH 204
+ ++L + G ++ S H
Sbjct: 171 ALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 37/231 (16%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK------ 73
T+R+LN L+ +I A++GP+G GKSTLL A RL +G V L K
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RL--LTPQSGTVFLGDKPISMLS 70
Query: 74 ----KRRLDYGGVAYVTQENIMLGTLTVRETIAY--SAHLRLPSNMNNEEITDVIEEAIT 127
RRL ++T E I TVRE +AY S L L ++ E+ + +A+
Sbjct: 71 SRQLARRLALLPQHHLTPEGI-----TVRELVAYGRSPWLSLWGRLSAED-NARVNQAME 124
Query: 128 EMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
+ + ADR + + +SGG+++R +A+ + ++ LDEPT+ LD +++
Sbjct: 125 QTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMR 179
Query: 188 ILKNIAHDGRTIISSIH---QPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235
+++ + G+T+++ +H Q S D L +L+ G + A+ P
Sbjct: 180 LMRELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGHVM----AQGTP 222
|
Length = 255 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 28/206 (13%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGK--------KRRLDYGGVAY 84
+ A+ G SGSGK+TL+ +AG G +V+ G L + + KRR + Y
Sbjct: 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR-----IGY 79
Query: 85 VTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWH 143
V QE + L+VR + Y PS + E + E+ G+ RL G
Sbjct: 80 VFQEARLFPHLSVRGNLRYGMKRARPSE------RRISFERVIELLGIGHLLGRLPGR-- 131
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGEK+R++I +L+ P+LL +DEP + LD + ++ L+ + + I +
Sbjct: 132 ---LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFG 229
EV L D + +L G G
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAG 214
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 15/188 (7%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNV-LLNGKKRRL 77
+ LN L+ +P + ++GP+G+GK+TL+D + G+ G V+ G+ L + R+
Sbjct: 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI 78
Query: 78 DYGGVAYVTQENIMLGTLTVRET--IAYSAHLRLPSNMN---NEEITDVIEEAITEMGLE 132
G+ Q+ + LTVRE +A + + +++ E I+E + +GL
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 133 DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
D DRL +S G+K+ L I + + P+LL LDEP +G+ A ++LK++
Sbjct: 139 DERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL 193
Query: 193 AHDGRTII 200
A +I+
Sbjct: 194 AG-KHSIL 200
|
Length = 249 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 4e-17
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQ--E 88
A+ +L ++GP+G+GK+TLL A+ G + G V + G + + YV Q E
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHE 59
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITD--VIEEAITEMGLEDCADRLIGNWHWRG 146
++V T+ S + + D + +A+ +GL + ADR +G
Sbjct: 60 FAWDFPISVAHTV-MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE----- 113
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206
+SGG+++R+ +A + TRP +L LDEP +GLD + ++ +A G I+ + H
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 207 SSEVFALFDDLFLLSG 222
+ + A D + LL+G
Sbjct: 174 AQAM-ATCDRVVLLNG 188
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 5e-17
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 32/230 (13%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66
+V+ + FG +L+G+ ++ ++GP+G+GK+TLL A+ G L+ G
Sbjct: 5 DVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AG 58
Query: 67 NVLLNGK----------KRRLDYGGVAYVTQENIMLGTLTVRETI--AYSAHLRLPSNMN 114
VL+ G RR VA V Q+ + VR+ + + H
Sbjct: 59 TVLVAGDDVEALSARAASRR-----VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWT 113
Query: 115 NEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174
E +E A+ G+ ADR + + +SGGE++R+ +A + +L LDEPT
Sbjct: 114 -ETDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDEPT 167
Query: 175 SGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF-DDLFLLSGG 223
+ LD +++++ + DG+T +++IH ++ A + D+L LL+ G
Sbjct: 168 ASLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 30/176 (17%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR---LSGNVVMTGNVLLNGK------- 73
L + ++ A++GPSG GKSTLL L R L + G VLL+GK
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 74 -----KRRLDYGGVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAIT 127
+RR V V Q+ N +++ + +AY LRL + ++E+ +++E ++
Sbjct: 82 DVVELRRR-----VGMVFQKPNPF--PMSIYDNVAYG--LRL-HGIKDKELDEIVESSLK 131
Query: 128 EMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
+ L D DRL + G+SGG+++RL IA + +P++L +DEPTS LD +
Sbjct: 132 KAALWDEVKDRL--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
|
Length = 253 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 9e-17
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLS-GNVVMTGNVLLNGK---------KRRLDYGG 81
EP IL ++G SGSGKSTL AL G L G + +G V+L+G+ R+L
Sbjct: 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92
Query: 82 VAYVTQENIML--GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR-- 137
+A + Q+ + +T+ + I + L + E E + ++GL D R
Sbjct: 93 IAMIFQDPMTSLNPVMTIGDQIREALRLH--GKGSRAEARKRAVELLEQVGLPDPERRDR 150
Query: 138 ----LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI- 192
L SGG ++R+ IA+ + +P+LL DEPT+ LD ++ +LK++
Sbjct: 151 YPHQL---------SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ 201
Query: 193 AHDGRTIISSIHQPSSEVFA-LFDDLFLLSGGETVYFGEAKS 233
G ++ H V A L D + ++ GE V G +
Sbjct: 202 RELGMAVLFITHDL--GVVAELADRVVVMYKGEIVETGPTEE 241
|
Length = 539 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 1e-16
Identities = 64/210 (30%), Positives = 110/210 (52%), Gaps = 18/210 (8%)
Query: 32 EPARILAVMGPSGSGKSTLL-------DALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAY 84
E +I A++G SG GKST L D +A ++ G V + G + N L
Sbjct: 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIA-KIDGLVEIEGKDVKNQDVVALRKNVGMV 84
Query: 85 VTQENIMLGTLTVRETIAYSAHLR-LPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNW 142
Q N+ + + + E I+Y+ L + N + EE ++ + + ++GL E+ D+L N
Sbjct: 85 FQQPNVFVKS--IYENISYAPKLHGMIKNKDEEEA--LVVDCLQKVGLFEEVKDKLKQNA 140
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202
+SGG+++RL IA + +P+LL LDEPTS LD ++ + ++LK ++H+ I+ +
Sbjct: 141 --LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ + A + F L GE + FGE+K
Sbjct: 199 HNMQQGKRVADYTAFFHL--GELIEFGESK 226
|
Length = 246 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK--------- 74
L G++ + V+G +G GK+TLL L G L V +G++ L+G+
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHER 72
Query: 75 -RRLDYGGVAYVTQENIMLGTLTVRETI--AYSAHLRLPSNMNNEEITDVIEEAITEM-- 129
R G+AYV Q + LTV E + +A R I + I E+
Sbjct: 73 ARA----GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRK---------IPDEIYELFP 119
Query: 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
L++ R G+ +SGG++++L+IA ++TRP+LL LDEPT G+ + + +++
Sbjct: 120 VLKEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI 174
Query: 190 KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236
+ + +G I + Q L D +++ G V G
Sbjct: 175 RRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDE 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-16
Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 30/206 (14%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVL--------LNGKKRRLDYGGVA 83
I A+ GPSGSGK++L++ +AG G + + G VL L +KRR +
Sbjct: 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR-----IG 79
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
YV Q+ + TVR + Y S ++ + +G+E DR G
Sbjct: 80 YVFQDARLFPHYTVRGNLRYG---MWKSM------RAQFDQLVALLGIEHLLDRYPGT-- 128
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGGEK+R++I +LT P+LL +DEP + LD ++ L+ + + I +
Sbjct: 129 ---LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFG 229
EV L D + +L G+ G
Sbjct: 186 SHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 19/197 (9%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDYGGVAYVTQENIMLGT 94
+ ++GP+G+GKSTLL + G L +G ++ +G R D + + + +
Sbjct: 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHKIGSLIESPPLYEN 84
Query: 95 LTVRETIAYSAHLR-LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153
LT RE + L LP I+E + + L + + + S G K+
Sbjct: 85 LTARENLKVHTTLLGLP--------DSRIDEVLNIVDLTNTGKKKAKQF-----SLGMKQ 131
Query: 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL 213
RL IA+ +L P+LL LDEPT+GLD + +++++ G T+I S H SEV L
Sbjct: 132 RLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH-ILSEVQQL 190
Query: 214 FDDLFLLSGGETVYFGE 230
D + ++S G Y G+
Sbjct: 191 ADHIGIISEGVLGYQGK 207
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 21/213 (9%)
Query: 39 VMGPSGSGKSTLLDALAGRL---SGNVVMTG-NVLLNGKKRRLDYGGVAYVTQENIMLGT 94
++GPSG GK+TLL LAG SG++++ G +V R + V Q +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR----HINMVFQSYALFPH 56
Query: 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154
+TV E +A+ +R + EI + EA+ + LE+ ADR +SGG+++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKPHQ-----LSGGQQQR 108
Query: 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFAL 213
+++A ++ +P++L LDEP S LD + LK I G T + H E +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD-QEEAMTM 167
Query: 214 FDDLFLLSGGETVYFGEAK---SAPTFFAEAGF 243
D + ++ G+ G + P A F
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLFVARF 200
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 49/211 (23%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD 78
R LL ++ P + ++G +G+GKSTLL LAG L + +G V R
Sbjct: 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGLR--- 67
Query: 79 YGGVAYVTQENIMLGTLTVRETI---------------------------AYSAHLRLPS 111
V Y++QE + TV + + + L
Sbjct: 68 ---VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLE 124
Query: 112 NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLD 171
++ + EEA+ +G D DR + + +SGG ++R+++A +L P LL LD
Sbjct: 125 ELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLD 178
Query: 172 EPTSGLDSAAAFFVVKILKN-------IAHD 195
EPT+ LD + ++ LK ++HD
Sbjct: 179 EPTNHLDLESIEWLEDYLKRYPGTVIVVSHD 209
|
Length = 530 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 40/222 (18%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK--------KR 75
L+G++ + ++GPSG GK+TLL +AG +G +LL+GK KR
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF---ETPTSGEILLDGKDITNLPPHKR 72
Query: 76 RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
V V Q + LTV E IA+ L+ + EI + + EA+ + LE A
Sbjct: 73 -----PVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYA 124
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI------- 188
+R +SGG+++R++IA ++ P++L LDEP LD +K+
Sbjct: 125 NRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD-------LKLRKDMQLE 172
Query: 189 LKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
LK + + G T + H E + D + +++ G+ G
Sbjct: 173 LKRLQKELGITFVFVTHD-QEEALTMSDRIAVMNKGKIQQIG 213
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-16
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 25/181 (13%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTG-NVLLNGKKRRLDYGGVAYVTQ- 87
L ++G SGSGKSTL LAG L SG+++ G ++ L G + R + V Q
Sbjct: 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQD 375
Query: 88 -ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWR 145
+ + +TV + +A LR+ + E + E + +GL + DR
Sbjct: 376 PYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLDRYP-----H 428
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-----------IAH 194
+SGG+++R++IA + P+LL LDEP S LD + V+ +LK+ I+H
Sbjct: 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488
Query: 195 D 195
D
Sbjct: 489 D 489
|
Length = 539 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-16
Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 34/231 (14%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG--- 80
L G+ + + A++G +G+GKSTL L G L + +G +L +GK +DY
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKP--IDYSRKG 76
Query: 81 --------GVAYVTQENIMLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGL 131
G+ + +N L + +V + +++ A +L+LP +E+ ++ A+ G+
Sbjct: 77 LMKLRESVGMVFQDPDN-QLFSASVYQDVSFGAVNLKLPE----DEVRKRVDNALKRTGI 131
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
E D+ H +S G+KKR++IA ++ P++L LDEPT+GLD ++K+L
Sbjct: 132 EHLKDKPT---HC--LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 192 IAHD-GRTIISSIHQPSSEVFALF-DDLFLLSGGETVYFGEAKSAPTFFAE 240
+ + G TII + H ++ L+ D++F++ G + G K FAE
Sbjct: 187 MQKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQGNPKEV---FAE 232
|
Length = 283 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 24/221 (10%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG------- 72
R+++NG++ + I+ ++GP+G+GK+T + G + + +G +LL+G
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLP 68
Query: 73 --KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
K+ RL G+ Y+ QE + LTV E I A L + ++ +E + +EE + E
Sbjct: 69 MHKRARL---GIGYLPQEASIFRKLTVEENI--LAVLEI-RGLSKKEREEKLEELLEEFH 122
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
+ +SGGE++R+ IA + T P+ L LDEP +G+D A + KI+K
Sbjct: 123 ITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177
Query: 191 NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231
+ G ++ + H E ++ D +++ G+ + G
Sbjct: 178 ILKDRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTP 217
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (192), Expect = 4e-16
Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 17/206 (8%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVLLNGKK-RRLD----YGGVAYVT 86
I +MGPSGSGKSTLL L RL + + G VL GK ++D V V
Sbjct: 38 IFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVF 96
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWR 145
Q+ L++ + IAY L+ EI ++EE + ++GL ++ DRL N
Sbjct: 97 QQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL--NSPAS 152
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205
+SGG+++RL+IA + +P++L +DEPTS +D + + K++ + ++ +I S H
Sbjct: 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS-HN 211
Query: 206 PSSEVFALFDDLFLLSGGETVYFGEA 231
P +V + D + L GE V +G +
Sbjct: 212 P-QQVARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 4e-16
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 16/201 (7%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL---SGNVVMTG-NVLLNGKKRRLDYGGVAYVTQENIM 91
+ +GP+G+GK+T + L L SG + G +V+ +K R G V Q +
Sbjct: 21 VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG---IVPQYASV 77
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151
LT RE + L + +E + EE + L + ADR +G SGG
Sbjct: 78 DEDLTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGM 129
Query: 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVF 211
++RL IA ++ +P +LFLDEPT+GLD + ++ + +G TI+ + H E
Sbjct: 130 RRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY-MEEAD 188
Query: 212 ALFDDLFLLSGGETVYFGEAK 232
L D + ++ G + G +
Sbjct: 189 KLCDRIAIIDHGRIIAEGTPE 209
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-16
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 32/240 (13%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLS 59
L E +T P G + +L G++ + L ++GPSGSGKSTL L G S
Sbjct: 335 LSVERLTAAPP----GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390
Query: 60 GNVVMTGNVLLNGKKRRLDYGG--VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE 117
G+V + G L + +L G + Y+ Q ++ L T+ E IA E
Sbjct: 391 GSVRLDGADLRQWDREQL---GRHIGYLPQ-DVELFDGTIAENIA---------RFGEEA 437
Query: 118 ITDVIEEA-----ITEM--GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFL 170
+ + EA + E+ L D IG +SGG+++R+++A + P L+ L
Sbjct: 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVL 496
Query: 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230
DEP S LDS + + G T++ H+PS A D + +L G FG
Sbjct: 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 70/298 (23%), Positives = 119/298 (39%), Gaps = 47/298 (15%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVL--LNGKKRRLDYGGVAYV 85
E L ++GPSGSGK+T L + RL SG +++ G + L+ + R G YV
Sbjct: 25 EEGEFLVLIGPSGSGKTTTL-KMINRLIEPTSGEILIDGEDISDLDPVELRRKIG---YV 80
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--DCADRLIGNWH 143
Q+ + LTV E IA L + E I +E + +GL+ + ADR
Sbjct: 81 IQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRADELLDLVGLDPSEYADRYP---- 133
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS----AAAFFVVKILKNIAHDGRTI 199
+SGG+++R+ +A + P +L +DEP LD + ++ K + G+TI
Sbjct: 134 -HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL---GKTI 189
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLR-C 258
+ H E L D + ++ GE V + P NP++ F+
Sbjct: 190 VFVTHD-IDEALKLADRIAVMDAGEIVQYDT-------------PDEILANPANDFVEDF 235
Query: 259 INSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQ 316
+ + + S + L + + S++ R RS +
Sbjct: 236 FGESERGLRLLSLVSVADAVRRGEPADGEPLL-----EGFVDRDALSDFLARGRSVLP 288
|
Length = 309 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 7e-16
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 25/223 (11%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLL 70
NF + +L + +P +A++GP+G+GK+TL++ L G +++ G +
Sbjct: 9 NFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR 68
Query: 71 NGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD-VIEEAITEM 129
+ ++ L + V Q+ + T+ E I TD + EA E
Sbjct: 69 DISRKSL-RSMIGVVLQDTFLFSG-TIMENIRL----------GRPNATDEEVIEAAKEA 116
Query: 130 GLEDCADRLIGNWHW------RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
G D +L + +S GE++ L+IA +L P++L LDE TS +D+
Sbjct: 117 GAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176
Query: 184 FVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
+ + L+ + GRT I H+ S+ A D + +L G+ +
Sbjct: 177 LIQEALEKLMK-GRTSIIIAHRLSTIKNA--DKILVLDDGKII 216
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 7e-16
Identities = 74/259 (28%), Positives = 116/259 (44%), Gaps = 22/259 (8%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66
E+T V S RL G+ P ++G +G+GK+T L G V +G
Sbjct: 1942 ELTKVYSGTSSPAVDRLCVGV----RPGECFGLLGVNGAGKTTTFKMLTG---DTTVTSG 1994
Query: 67 NVLLNGKKRRLDYGGV----AYVTQENIMLGTLTVRETIAYSAHLR-LPSNMNNEEITDV 121
+ + GK + V Y Q + + LT RE + A LR +P+ EEI V
Sbjct: 1995 DATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPA----EEIEKV 2050
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+I +GL ADRL G + SGG K++LS A+ ++ P L+ LDEPT+G+D A
Sbjct: 2051 ANWSIQSLGLSLYADRLAGTY-----SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
+ + +I +GR ++ + H E AL L ++ G G + + F +
Sbjct: 2106 RRMLWNTIVSIIREGRAVVLTSHS-MEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDG 2164
Query: 242 GFPCPTRRNPSDHFLRCIN 260
++P D L +N
Sbjct: 2165 YIVTMKIKSPKDDLLPDLN 2183
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 7e-16
Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 38/211 (18%)
Query: 11 VVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---DALAGRLSGNVVMTGN 67
V +FG +L+ + + ++ ++GPSGSGKSTLL + L SG++++ G
Sbjct: 7 VSKHFGPTQ---VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63
Query: 68 VLLNGKKR----RLDYGGV-------AYVTQ-ENIMLGTLTVRETIAYSAHLRLPSNMNN 115
+ + K R + G V ++T EN+M G L VR +
Sbjct: 64 KVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR-------------GASK 110
Query: 116 EEITDVIEEAITEMGLEDCADRLIGNWHWRG-ISGGEKKRLSIALEILTRPQLLFLDEPT 174
EE E + ++GL + A H+ +SGG+++R++IA + +P+L+ DEPT
Sbjct: 111 EEAEKQARELLAKVGLAERAH------HYPSELSGGQQQRVAIARALAVKPKLMLFDEPT 164
Query: 175 SGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205
S LD V+K+++++A +G T++ H+
Sbjct: 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 8e-16
Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 31/230 (13%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK----- 73
++ LN ++ P I A++GPSGSGKSTLL ++ L+ V +TG+++ NG
Sbjct: 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77
Query: 74 -----KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE 128
R + G V Q N +++ E + Y LRL + + + + +E+++
Sbjct: 78 RTDTVDLRKEIGMV--FQQPNPF--PMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKG 131
Query: 129 MGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
+ ++ DRL + G+SGG+++R+ IA + T P+++ LDEPTS LD +A + +
Sbjct: 132 ASIWDEVKDRLHDSA--LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 188 ILKNIAHDGRTII--SSIHQPS--SEVFALFDDLFLLSGGETVYFGEAKS 233
L + D ++ S+ Q S S+ F D G+ + + + K
Sbjct: 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLD------GDLIEYNDTKQ 233
|
Length = 252 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 8e-16
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 21/228 (9%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66
++ V ++G ++NGL+ ++GP+G+GKST+ + G S + G
Sbjct: 43 DLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AG 96
Query: 67 NVLLNG----KKRRLDYGGVAYVTQENIMLGTLTVRET-IAYSAHLRLPSNMNNEEITDV 121
+ + G + RL + V Q + + TVRE + + + M+ EI V
Sbjct: 97 KITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG----MSTREIEAV 152
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
I + LE AD + + +SGG K+RL++A ++ PQLL LDEPT+GLD A
Sbjct: 153 IPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207
Query: 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+ + L+++ G+TI+ + H E L D L +L G + G
Sbjct: 208 RHLIWERLRSLLARGKTILLTTHF-MEEAERLCDRLCVLEAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 9e-16
Identities = 75/239 (31%), Positives = 113/239 (47%), Gaps = 34/239 (14%)
Query: 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNV 62
E VT+V P G + L G++ + LA++GPSGSGKSTL + G SG+V
Sbjct: 320 ENVTIVPP----GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375
Query: 63 VMTGNVLLNGKKRRLDYGG--VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
+ G L + G + Y+ Q+ + L TV E IA R N + E+I
Sbjct: 376 RLDGADLKQWDRETF---GKHIGYLPQD-VELFPGTVAENIA-----RFGENADPEKI-- 424
Query: 121 VIEEA----ITEM--GLEDCADRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDE 172
IE A + E+ L D D +IG G SGG+++R+++A + P+L+ LDE
Sbjct: 425 -IEAAKLAGVHELILRLPDGYDTVIGP---GGATLSGGQRQRIALARALYGDPKLVVLDE 480
Query: 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231
P S LD + +K + G T++ H+PS + D + +L G FGE
Sbjct: 481 PNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGER 537
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-15
Identities = 61/212 (28%), Positives = 90/212 (42%), Gaps = 66/212 (31%)
Query: 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGN 61
E +++ P+ R LL L+ +P L + GPSG+GKS+L ALAG L SG
Sbjct: 4 ENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPWGSGR 57
Query: 62 VVMTGNVLLNGKKRRLDYGGVAYVTQENIM-LGTLTVRETIAYSAHLRLPSNMNNEEITD 120
+ M + ++ Q + LGTL RE + Y P
Sbjct: 58 IGMPEG------------EDLLFLPQRPYLPLGTL--REQLIY------P---------- 87
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
W +SGGE++RL+ A +L +P+ +FLDE TS LD
Sbjct: 88 ---------------------WD-DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFA 212
+ + ++LK G T+IS H+PS F
Sbjct: 126 SEDRLYQLLKE---LGITVISVGHRPSLWKFH 154
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 21/162 (12%)
Query: 33 PAR-ILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN 89
PAR + A++GPSG GKSTLL L L V +TG + ++G+ YG + V
Sbjct: 27 PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI---YGNID-VADLR 82
Query: 90 IMLGT---------LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLI 139
I +G +++ E +AY LR + + + +V+E ++ L ++ DRL
Sbjct: 83 IKVGMVFQKPNPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL- 139
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
H G+SGG+++RL IA I P ++ +DEPTS LD A
Sbjct: 140 -KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-15
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 15/157 (9%)
Query: 36 ILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI-ML 92
+ A++GPSG GKSTLL +L L V + G VL +G+ D + + M+
Sbjct: 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI-YDKKIDVVELRRRVGMV 87
Query: 93 G------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWR 145
+++ + IAY RL + +E+ +++EE++ + L ++ DRL +
Sbjct: 88 FQKPNPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSAL-- 143
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
G+SGG+++RL IA + P++L LDEPTS LD A
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 32/222 (14%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV- 82
L L+G IL ++GP+G+GKSTLL +AG SG +G++ G+ +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLE-AWSATE 69
Query: 83 -----AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
AY++Q+ + V + ++ T+++ + + L+D R
Sbjct: 70 LARHRAYLSQQQTPPFAMPVWHYLTLHQP--------DKTRTELLNDVAGALALDDKLGR 121
Query: 138 LIGNWHWRGISGGEKKRLSIALEIL-----TRP--QLLFLDEPTSGLDSAAAFFVVKILK 190
+SGGE +R+ +A +L P QLL LDEP + LD A + ++L
Sbjct: 122 STNQ-----LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLS 176
Query: 191 NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ G I+ S H + +LL G+ + G +
Sbjct: 177 ALCQQGLAIVMSSHD-LNHTLRHAHRAWLLKRGKLLASGRRE 217
|
Length = 248 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 65/237 (27%), Positives = 112/237 (47%), Gaps = 46/237 (19%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDAL-------AGRLS-GNVVMTGNVLLNG 72
+ +L+G+ +P ++A++GPSGSGK+TLL + AG + G++ + L+
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 73 KK---RRLDYGGVAYVTQ-----------ENIMLGTLTVRETIAYSAHLRLPSNMNNEEI 118
+K R+L V +V Q ENI+ G + V+ EE
Sbjct: 76 QKGLIRQLRQH-VGFVFQNFNLFPHRTVLENIIEGPVIVKGE-------------PKEEA 121
Query: 119 TDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
T E + ++GL + R +SGG+++R++IA + RP+++ DEPTS LD
Sbjct: 122 TARARELLAKVGLAGKETS-----YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176
Query: 179 SAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA--LFDDLFLLSGGETVYFGEAKS 233
V+ ++ +A + RT++ H+ S FA + D + G V G AK+
Sbjct: 177 PELVGEVLNTIRQLAQEKRTMVIVTHEMS---FARDVADRAIFMDQGRIVEQGPAKA 230
|
Length = 250 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 57/201 (28%), Positives = 104/201 (51%), Gaps = 18/201 (8%)
Query: 38 AVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVL--LNGKKRRLDYGGVAYVTQENIML 92
A++G +GSGKST+ L G L SG + + G + N K+ R G+ + +N +
Sbjct: 39 AILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIR-KKIGIIFQNPDNQFI 97
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152
G TV + IA+ + + +++ D+I++ ++G+ED D+ N +SGG+K
Sbjct: 98 G-ATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQN-----LSGGQK 148
Query: 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIHQPSSEVF 211
+R++IA + P+++ DE TS LD + KI+ ++ +T+IS H +
Sbjct: 149 QRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL 208
Query: 212 ALFDDLFLLSGGETVYFGEAK 232
A D + + S G+ + G+ K
Sbjct: 209 A--DKVIVFSEGKLIAQGKPK 227
|
Length = 271 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 6e-15
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 29/186 (15%)
Query: 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNV 62
++ VT P P +L ++ P + A++GPSGSGKST++ L + G
Sbjct: 14 FQNVTFAYPT---RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG-- 68
Query: 63 VMTGNVLLNGK-----KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE 117
G VLL+GK + + + V+ V QE ++ ++++ IAY L S + E
Sbjct: 69 ---GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYG----LQS-CSFEC 119
Query: 118 ITDVIEEAITE---MGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDE 172
+ + ++A L D +G +G +SGG+K+R++IA ++ PQ+L LDE
Sbjct: 120 VKEAAQKAHAHSFISELASGYDTEVGE---KGSQLSGGQKQRVAIARALIRNPQVLILDE 176
Query: 173 PTSGLD 178
TS LD
Sbjct: 177 ATSALD 182
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 7e-15
Identities = 60/202 (29%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 38 AVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG-KKRRLD----YGGVAYVTQENIML 92
A++G GSGKSTLL L G G+VLL+G R++D + YV Q + L
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRL 550
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDV-IEEAITEMGLEDCA-------DRLIGNWHW 144
T+R+ IA A D I A G+ + D IG
Sbjct: 551 FYGTLRDNIALGAPY----------ADDEEILRAAELAGVTEFVRRHPDGLDMQIGE-RG 599
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
R +SGG+++ +++A +L P +L LDEPTS +D+ + LK G+T++ H
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTH 658
Query: 205 QPSSEVFALFDDLFLLSGGETV 226
+ S + L D + ++ G V
Sbjct: 659 RTS--LLDLVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 8e-15
Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 35 RILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKK---RRLDY----GGVAYV 85
+I A++GPSG GKST L L L NV + G VLL+GK + +D V V
Sbjct: 31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMV 90
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHW 144
Q+ +++ + +AY R+ + +E+ ++E A+ + L ++ D L +
Sbjct: 91 FQKPNPF-PMSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSA-- 145
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
+SGG+++RL IA I +P ++ +DEPTS LD + + ++ + + TI+ H
Sbjct: 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKE-YTIVIVTH 204
Query: 205 --QPSSEVFALFDDLFLLSGGETVYFGE 230
Q +S V + + FL+ G+ + F +
Sbjct: 205 NMQQASRV-SDYTAFFLM--GDLIEFNK 229
|
Length = 251 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 8e-15
Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 35/220 (15%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLD----YGGVAYVTQENIM 91
+A++GPSG+GK++LL+AL G L G++ +NG + R LD +++V Q N
Sbjct: 379 IALVGPSGAGKTSLLNALLGFLP----YQGSLKINGIELRELDPESWRKHLSWVGQ-NPQ 433
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITEM--GLEDCADRLIGNWHWRGIS 148
L T+R+ + + ++E++ +E A ++E L D IG+ G+S
Sbjct: 434 LPHGTLRDNVLLGNP-----DASDEQLQQALENAWVSEFLPLLPQGLDTPIGD-QAAGLS 487
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI-----ISSI 203
G+ +RL++A +L QLL LDEPT+ LD+ + V++ L + T+ + +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 204 HQPSSEVFALFDDLFLLSGGETV---YFGEAKSAPTFFAE 240
Q +D ++++ G+ V + E A FA
Sbjct: 548 AQ--------WDQIWVMQDGQIVQQGDYAELSQAGGLFAT 579
|
Length = 588 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-15
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 15/177 (8%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66
EV V FG L+ ++ ++A++GPSGSGK+TLL +AG + +G
Sbjct: 4 EVRNVSKRFGDFVA---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SG 57
Query: 67 NVLLNGK---KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNE-EITDVI 122
+L G+ + V +V Q + +TV + +A+ ++ S E EI +
Sbjct: 58 TILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
E + + L+ ADR +SGG+++R+++A + P++L LDEP LD+
Sbjct: 118 HELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 20/170 (11%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG--------- 72
R+L G++ I+A++G SGSGKSTLL L G + +G VL NG
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL---DNPTSGEVLFNGQSLSKLSSN 75
Query: 73 KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE 132
++ +L + ++ Q + +L T E +A L + +E + E + ++GLE
Sbjct: 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL---LIGKKSVKEAKERAYEMLEKVGLE 132
Query: 133 DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
+ +SGGE++R++IA ++ +P L+ DEPT LD+ A
Sbjct: 133 HRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-14
Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 26/221 (11%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKK---RRLDYGGVAYV 85
+P ++ ++G SGSGKSTL + +G V++ G+ L RR V V
Sbjct: 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR----QVGVV 81
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE---MGLEDCADRLIGNW 142
QEN++ ++R+ IA + M+ E + + + A L + D ++G
Sbjct: 82 LQENVLFNR-SIRDNIALAD-----PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE- 134
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202
G+SGG+++R++IA ++ P++L DE TS LD + +++ + +I GRT+I
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIII 193
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGF 243
H+ S+ A D + ++ G V E S AE G
Sbjct: 194 AHRLSTVKNA--DRIIVMEKGRIV---EQGSHDELLAENGL 229
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-14
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 35/237 (14%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV---MTGNVLLNGKKRRL-- 77
+L G++ A +++++G SGSGKST L + N + G++++NG+ L
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCI------NFLEKPSEGSIVVNGQTINLVR 73
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL--EDCA 135
D G V +N L L R T+ + H L S+M E +V+E I +GL ++
Sbjct: 74 DKDGQLKVADKN-QLRLLRTRLTMVFQ-HFNLWSHMTVLE--NVMEAPIQVLGLSKQEAR 129
Query: 136 DRLIGNWHWRGI------------SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
+R + GI SGG+++R+SIA + P++L DEPTS LD
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 184 FVVKILKNIAHDGRTIISSIHQ------PSSEVFALFDDLFLLSGGETVYFGEAKSA 234
V++I++ +A +G+T++ H+ SS V L G FG +S
Sbjct: 190 EVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP 246
|
Length = 257 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 51/190 (26%), Positives = 76/190 (40%), Gaps = 46/190 (24%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
+ +L G+ + + A+MGP+GSGKSTL + G V G +L G
Sbjct: 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKG-------- 63
Query: 81 GVAYVTQENIMLGTLTVRE------TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
E+I L E +A+ +P N + + V E
Sbjct: 64 -------EDIT--DLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNE----------- 103
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
G SGGEKKR I +L P L LDEP SGLD A V +++ +
Sbjct: 104 -----------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE 152
Query: 195 DGRTIISSIH 204
+G++++ H
Sbjct: 153 EGKSVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 33/202 (16%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL 77
G + L +A++G SGSGKSTLL LAG G++ LNG +
Sbjct: 348 GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW---DPQQGSITLNGVEIAS 404
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAY---SAHL---RLPSNM--NNEEITDV-IEEAITE 128
L +RETI+ HL L N+ N + +D + A+ +
Sbjct: 405 --------------LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQ 450
Query: 129 MGLEDCADRLIGNWH-W-----RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
+GLE + + W R +SGGE++RL++A +L L LDEPT GLD
Sbjct: 451 VGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510
Query: 183 FFVVKILKNIAHDGRTIISSIH 204
V+ +L A +G+T++ H
Sbjct: 511 RQVLALLFEHA-EGKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 40 MGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLT 96
+GPSG GK+TLL +AG + +G + G + ++ DYG V Q + LT
Sbjct: 36 LGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG---IVFQSYALFPNLT 92
Query: 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156
V + IAY M E+ + + E + +GL + G +SGG+++R++
Sbjct: 93 VADNIAYGLK---NRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-----LSGGQQQRVA 144
Query: 157 IALEILTRPQLLFLDEPTSGLD 178
+A + T P LL LDEP S LD
Sbjct: 145 LARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 4e-14
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 38/225 (16%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG- 81
+L GL + + ++G +G GKSTL L+G L G VL GK LDY
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKP--LDYSKR 70
Query: 82 --------VAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMN--NEEITDVIEEAITEMG 130
VA V Q+ + + IA+S LR N+ EIT ++EA+T
Sbjct: 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFS--LR---NLGVPEAEITRRVDEALT--- 122
Query: 131 LEDCADRLIGNWHWRG-----ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185
L+ H+R +S G+KKR++IA ++ + + L LDEPT+GLD A +
Sbjct: 123 -------LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQM 175
Query: 186 VKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230
+ I++ I G +I S H ++ + D +++L G+ + G
Sbjct: 176 IAIIRRIVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGA 219
|
Length = 271 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 5e-14
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 24/162 (14%)
Query: 32 EPARILAVMGPSGSGKSTLLDAL--------AGRLSGNVVMTGNVLLNGKK------RRL 77
EP + A +GPSG GKST+L L R+ G V++ G L G RR
Sbjct: 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY-GPGVDPVAVRR- 85
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCAD 136
+ V Q T+++R+ + A L+L N +++ +++E+++ L + D
Sbjct: 86 ---TIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD 140
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
RL + G+SGG+++RL IA I P +L +DEP S LD
Sbjct: 141 RL--DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 5e-14
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGN-VLLNGKK 74
+ L + E +L V+GPSG GK+TLL+ +AG + G++ + G V G +
Sbjct: 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE 71
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134
R GV V Q +L V++ +A+ L + + ++ + + ++GLE
Sbjct: 72 R-----GV--VFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGA 121
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
R I W+ +SGG+++R+ IA + PQLL LDEP LD+ + +L +
Sbjct: 122 EKRYI----WQ-LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176
Query: 195 D-GRTIISSIHQPSSEVFALFDDLFLLSGG 223
+ G+ ++ H VF + +L LLS G
Sbjct: 177 ETGKQVLLITHDIEEAVF-MATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 6e-14
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 24/150 (16%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK--------KRRLDYGGVAYVTQE 88
L ++GPSG GK+T+L +AG + + +G ++L+G+ R V V Q
Sbjct: 43 LTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRH-----VNTVFQS 94
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
+ +TV E +A+ LR+ EIT + EA+ + LE+ A R +S
Sbjct: 95 YALFPHMTVFENVAFG--LRM-QKTPAAEITPRVMEALRMVQLEEFAQRKPHQ-----LS 146
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
GG+++R++IA ++ +P++L LDE S LD
Sbjct: 147 GGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 7e-14
Identities = 54/204 (26%), Positives = 105/204 (51%), Gaps = 29/204 (14%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG--------- 72
+ L+ + ++A++GPSGSGKSTLL L+G ++G+ ++ L G
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 73 ----KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP------SNMNNEEITDVI 122
+K R + G Y+ Q+ ++ L+V E + A P S E+ +
Sbjct: 78 ARDIRKSRANTG---YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
+ A+T +G+ A + + +SGG+++R++IA ++ + +++ DEP + LD +A
Sbjct: 135 Q-ALTRVGMVHFAHQRVST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 183 FFVVKILKNI-AHDGRTIISSIHQ 205
V+ L++I +DG T++ ++HQ
Sbjct: 189 RIVMDTLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 7e-14
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 26/207 (12%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT---GNVLLNGKKRRLD------YGGV 82
P + A++G +G+GKSTL+ L+G V G +L++GK G+
Sbjct: 32 RPGEVHALLGENGAGKSTLMKILSG------VYPPDSGEILIDGKPVAFSSPRDALAAGI 85
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSN-MNNEEITDVIEEAITEMGLEDCADRLIGN 141
A V QE ++ L+V E I ++ + + E + +GL+ D L+G+
Sbjct: 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD 145
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI-- 199
+S +++ + IA + ++L LDEPT+ L + +++ + G I
Sbjct: 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIY 200
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETV 226
IS EVF + D + +L G V
Sbjct: 201 ISHRLD---EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 7e-14
Identities = 51/211 (24%), Positives = 104/211 (49%), Gaps = 21/211 (9%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNV---VMTGNVLLNGKKRRLDYGGVAYVTQENIM 91
+I A++GPSG GK+TLL ++ R++ ++ + G + G+ Y VT+
Sbjct: 30 QITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQDI---YDPQLDVTEYRKK 85
Query: 92 LGT---------LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
+G +++ + +A+ R+ + ++ ++EE++ + L D + N
Sbjct: 86 VGMVFQKPTPFPMSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NK 142
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202
+SGG+++RL IA + P+++ LDEPTS LD A + K+L+ ++ + TI+
Sbjct: 143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIV 201
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
H + + D + + GE + +G +
Sbjct: 202 THN-IGQAIRIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 7e-14
Identities = 47/154 (30%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 35 RILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK---KRRLDY----GGVAYV 85
+ A++GPSG GKST + L ++ NV +TG + NG K ++D + V
Sbjct: 39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMV 98
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHW 144
Q+ ++ + +AY R+ N +++ +++E+++ ++ L D DRL +
Sbjct: 99 FQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQA 153
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+SGG+++RL IA + T P +L +DEPTS LD
Sbjct: 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 8e-14
Identities = 68/309 (22%), Positives = 128/309 (41%), Gaps = 39/309 (12%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVLLNGKKRRLDYGG---VAYVTQE 88
I +MG SGSGKST + L RL +G + + G ++ L + V Q+
Sbjct: 21 IFVIMGLSGSGKSTTVRML-NRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
+ +T+ + + L +E + E + +GLE+ R + +S
Sbjct: 80 FALFPHMTILQNTSLGPEL---LGWPEQERKEKALELLKLVGLEEYEHR-----YPDELS 131
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIHQPS 207
GG ++R+ +A + P +L +DE S LD + LK + A +TI+ H
Sbjct: 132 GGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD-L 190
Query: 208 SEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDFDVVT 267
E + D + ++ GE V + G P RNP++ ++ D+
Sbjct: 191 DEAIRIGDRIVIMKAGEIV-------------QVGTPDEILRNPANEYVEEFIGKVDLSQ 237
Query: 268 EVLMESQRICETQNPLGPIRNL----PTSEIKGILIKKYRCSEYATRARSRIQGISSIEG 323
+ +++RI + GPI P S ++ ++ + S Y ++++ G+ +E
Sbjct: 238 --VFDAERI-AQRMNTGPITKTADKGPRSALQ-LMRDERVDSLYVVDRQNKLVGVVDVES 293
Query: 324 LEFKRKNGS 332
++ RK
Sbjct: 294 IKQARKKAQ 302
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 9e-14
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 14/196 (7%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-----LSGNVVMTGNVLLNGKKR 75
+ +L G+ + I A+MGP+GSGKSTL +AG SG ++ G LL +
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72
Query: 76 RLDYGGVAYVTQENIMLGTLTVRETI--AYSAHL--RLPSNMNNEEITDVIEEAITEMGL 131
G+ Q + ++ E + A +A R ++ + +++ + +G+
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 132 -EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
E+ +R + G SGGEKKR I L P+L LDE SGLD A V + +
Sbjct: 133 DEEFLNRSVNE----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGIN 188
Query: 191 NIAHDGRTIISSIHQP 206
+ R+ + H
Sbjct: 189 RLREPDRSFLIITHYQ 204
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 18/148 (12%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVL--LNGKKRRLDYGGVAYVTQENI 90
+ ++GPSG GK+T L +AG SG + + G + L K R +A V Q
Sbjct: 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR-----DIAMVFQNYA 82
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150
+ +TV + IA+ LR + +EI + + E + +E DR + +SGG
Sbjct: 83 LYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDR-----KPKQLSGG 134
Query: 151 EKKRLSIALEILTRPQLLFLDEPTSGLD 178
+++R+++ I+ P++ +DEP S LD
Sbjct: 135 QRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 41/201 (20%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81
+ L GL+ A++GP+G+GKSTLL L G + G V + G++
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI---YLPQRGRVKVMGRE------- 68
Query: 82 VAYVTQENI-----MLG-----------TLTVRETIAYSAHLRLPSNM--NNEEITDVIE 123
V EN +G + TV + +A+ P NM + +E+ +E
Sbjct: 69 ---VNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG-----PVNMGLDKDEVERRVE 120
Query: 124 EAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
EA+ + + D D+ +H +S G+KKR++IA + P ++ LDEP + LD
Sbjct: 121 EALKAVRMWDFRDK--PPYH---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQE 175
Query: 184 FVVKILKNIAHDGRTIISSIH 204
+++IL + + G+T+I + H
Sbjct: 176 TLMEILDRLHNQGKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 1e-13
Identities = 54/234 (23%), Positives = 109/234 (46%), Gaps = 34/234 (14%)
Query: 36 ILAVMGPSGSGKSTLLDAL--------AGRLSGNVVMTGNVLLNGK------KRRLDYGG 81
+ A++GPSG GKST+L ++ + R++G +++ + + +RR
Sbjct: 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRR----- 86
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIG 140
V V Q+ +++ + + A +L +N E +++E ++ + L D DRL
Sbjct: 87 VGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKS 144
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
N +SGG+++RL IA I +P+++ +DEP S LD + + ++++ + II
Sbjct: 145 NA--MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIII 202
Query: 201 SSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDH 254
+ + + + + F + G+ V GE K F P ++ D+
Sbjct: 203 VTHNMQQAARVSDYTAFFYM--GDLVECGETKKI--------FTTPEKKQTEDY 246
|
Length = 252 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 1e-13
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 52/174 (29%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDYG-----GVAYVT--- 86
I+ + G G+G++ L +AL G +G + L+GK R G+AYV
Sbjct: 28 IVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDR 84
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146
+ ++ L+V E IA S+ L
Sbjct: 85 KREGLVLDLSVAENIALSSLL--------------------------------------- 105
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
SGG ++++ +A + P++L LDEPT G+D A + ++++ +A G+ ++
Sbjct: 106 -SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 1e-13
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 22/215 (10%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK----KRRLDYGGVAYVTQENIML 92
++GP+G+GKST+ L G +S + G + + G+ + RL + V Q + +
Sbjct: 33 FGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARLARVAIGVVPQFDNLD 89
Query: 93 GTLTVRETI-AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151
TVRE + + + M+ EI VI + LE AD + +SGG
Sbjct: 90 PEFTVRENLLVFGRYFG----MSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGM 140
Query: 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVF 211
K+RL++A ++ PQLL LDEPT+GLD A + + L+++ G+TI+ + H E
Sbjct: 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF-MEEAE 199
Query: 212 ALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCP 246
L D L +L G + A+ P + C
Sbjct: 200 RLCDRLCVLESGRKI----AEGRPHALIDEQIGCN 230
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 25/173 (14%)
Query: 8 VTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGN 67
+ + G R LL L+ + +A++GP+G+GKSTLL LAG L +G
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGT 378
Query: 68 VLLNGKKRRLDYGGVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V + + + Y Q + + TV E ++ + + +E+ +
Sbjct: 379 VKVGETVK------IGYFDQHRDELDPDKTVLEELS-----EGFPDGDEQEVRAYLGR-- 425
Query: 127 TEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
G + ++ +G +SGGEK RL +A +L P LL LDEPT+ LD
Sbjct: 426 --FGFTGEDQEKPVGV-----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 46/225 (20%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK--KRRLDYG-----GVAYVTQ- 87
I+ + G +G+G+S L++A++G +G +LLNGK RL G+AYV +
Sbjct: 286 IVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSPRERRRLGLAYVPED 342
Query: 88 -------------ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM----- 129
EN++LG +S L + I E I E
Sbjct: 343 RHGHGLVLDLSLAENLVLGRHD---KKPFSRGGFL----DRRAIRKFARELIEEFDVRAP 395
Query: 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
+ A L SGG +++L +A E+ RP LL +PT GLD A F+ + L
Sbjct: 396 SPDAPARSL---------SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 190 KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234
+ G+ ++ I + E+ L D + ++ G V + A
Sbjct: 447 LELRDAGKAVL-LISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490
|
Length = 501 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 35 RILAVMGPSGSGKSTLLDAL--------AGRLSGNVVMTG-NVLLNGKKRRLDYGGVAYV 85
++ A +GPSG GKSTLL R G +++ G N+L + L V V
Sbjct: 40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMV 99
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHW 144
Q+ +++ + IA+ +RL ++ E+ + +E A+T+ L + D+L +
Sbjct: 100 FQKPTPF-PMSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--HQSG 154
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+SGG+++RL IA I RP++L LDEP S LD
Sbjct: 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 60/227 (26%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV 62
L E V+ P G +L ++ EP LA++GPSGSGKSTL + G L
Sbjct: 1 LEVENVSFRYP----GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--- 53
Query: 63 VMTGNVLLNG----KKRRLDYGG-VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE 117
+G V L+G + + G V Y+ Q+ L + ++ E I
Sbjct: 54 PTSGRVRLDGADISQWDPNELGDHVGYLPQD-DELFSGSIAENI---------------- 96
Query: 118 ITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGL 177
+SGG+++RL +A + P++L LDEP S L
Sbjct: 97 -----------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHL 127
Query: 178 DSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224
D + + + + G T I H+P E A D + +L G
Sbjct: 128 DVEGERALNQAIAALKAAGATRIVIAHRP--ETLASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 63/220 (28%), Positives = 116/220 (52%), Gaps = 26/220 (11%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGNVVMTGNVLLN----GKKRR 76
LN ++ + + L+++G +GSGKST L+D L SG +++ G++L + +
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82
Query: 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
+ G+ + +N +G TV + +A+ + + +EE+ + + EA+ +G++D +
Sbjct: 83 I---GMVFQNPDNQFVGA-TVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKE 135
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD- 195
R +SGG+K+R++IA + RP+++ LDE TS LD ++K +K I D
Sbjct: 136 REPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY 190
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235
T+IS H EV AL D + ++ G+ E+ S P
Sbjct: 191 QMTVISITHD-LDEV-ALSDRVLVMKNGQV----ESTSTP 224
|
Length = 279 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 2e-13
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 32 EPARILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK------------KRRL 77
+ + A++GPSG GK+T L A+ L+ +TG +LL+G+ +RR
Sbjct: 28 QRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR- 86
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CAD 136
V V Q+ T++V + + A L+L + + + +V E ++ L D D
Sbjct: 87 ----VGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD 140
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
RL G+SGG+++RL IA + P++L +DEPTS LD A+ + ++ ++
Sbjct: 141 RL--KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198
Query: 197 RTIISS--IHQPS 207
II + +HQ +
Sbjct: 199 TIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 18/201 (8%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDAL-------AGRLS--GNVVM 64
N G + L + +T L ++GPSG+GKS+LL L +G L+ GN
Sbjct: 9 NCFYGAHQALFD-ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD 67
Query: 65 TGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE 124
+ R L V V Q+ + LTV+E + A R+ ++ + +
Sbjct: 68 FSKTPSDKAIRDLRRN-VGMVFQQYNLWPHLTVQENLI-EAPCRVLGLSKDQALARAEK- 124
Query: 125 AITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184
+ + L+ ADR H +SGG+++R++IA ++ PQ+L DEPT+ LD
Sbjct: 125 LLKRLRLKPYADRY--PLH---LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 185 VVKILKNIAHDGRTIISSIHQ 205
+V I+K +A G T + H+
Sbjct: 180 IVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG------- 72
R+++N ++ I+ ++GP+G+GK+T + G + + +G +LL+
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLP 72
Query: 73 --KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
K+ RL G+ Y+ QE + LTV + I +R E + ++ + E
Sbjct: 73 MHKRARL---GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER-KEELDALLEEFH 128
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
+ D + +SGGE++R+ IA + P+ + LDEP +G+D A + +I+K
Sbjct: 129 ITHLRDSKAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
Query: 191 NIAHDG 196
++ G
Sbjct: 184 HLKDRG 189
|
Length = 243 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 15/216 (6%)
Query: 17 SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---DALAGRLSGNVVMTGNVLLNGK 73
T + LN ++ + +I V+G SG+GKSTL+ + L SG+V++ G L
Sbjct: 14 GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLS 73
Query: 74 KRRLDYG--GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131
L + + Q +L + TV +A L N +EI + E + +GL
Sbjct: 74 NSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEIKRKVTELLALVGL 130
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
D D N +SGG+K+R++IA + + P++L DE TS LD A ++++LK
Sbjct: 131 GDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKE 185
Query: 192 IAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
I G TI+ H+ V + D + ++S GE +
Sbjct: 186 INRRLGLTILLITHE-MDVVKRICDCVAVISNGELI 220
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 36 ILAVMGPSGSGKSTLLDALAG--RL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN--- 89
I A++G +GSGKSTL AL G RL SG + + G ++ L VAYV Q
Sbjct: 35 IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL----VAYVPQSEEVD 90
Query: 90 ----IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
+++ + + + LR + + ++ A+ + + + R IG
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQ----IVTAALARVDMVEFRHRQIGE---- 142
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205
+SGG+KKR+ +A I + Q++ LDEP +G+D ++ +L+ + +G+T++ S H
Sbjct: 143 -LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201
Query: 206 PSS 208
S
Sbjct: 202 LGS 204
|
Length = 272 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 41/205 (20%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA 83
L ++ +A+ GPSG+GKSTLL +L + +G +L+ + +D +A
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY---LPDSGRILVRHEGAWVD---LA 77
Query: 84 YVTQENIMLGTLTVRE-TIAY-SAHLR-LPSNMNNEEIT--DVIEEAITEMGLEDCA--- 135
+ + L VR TI Y S LR +P ++ +V+ E + E G+ A
Sbjct: 78 QASPREV----LEVRRKTIGYVSQFLRVIP------RVSALEVVAEPLLERGVPREAARA 127
Query: 136 ------------DRLIGNWHW--RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+RL WH SGGE++R++IA + +L LDEPT+ LD+A
Sbjct: 128 RARELLARLNIPERL---WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 182 AFFVVKILKNIAHDGRTIISSIHQP 206
VV+++ G +I H
Sbjct: 185 RQVVVELIAEAKARGAALIGIFHDE 209
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-13
Identities = 52/216 (24%), Positives = 111/216 (51%), Gaps = 19/216 (8%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVL----LNGK 73
RR++ ++ I+ ++GP+G+GK+T + G R +GN+++ + L+ +
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR 75
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
RR G+ Y+ QE + L+V + + A L++ +++ E+ D E + E +E
Sbjct: 76 ARR----GIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEH 129
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
D + + +SGGE++R+ IA + P+ + LDEP +G+D + + +I++++
Sbjct: 130 LRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR 184
Query: 194 HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
G ++ + H E A+ + +++S G + G
Sbjct: 185 DSGLGVLITDHN-VRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 31/165 (18%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRL---SGNVV--MTGNVLLN------GKKRRL---D 78
P +L ++G SGSGK+TLL+AL+ RL +G V M L + ++RRL +
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTE 90
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHL--RLPSNM--NNEEITDVIEEAITEMG-LED 133
+G +V Q + G +R ++ ++ RL M D+ A + +E
Sbjct: 91 WG---FVHQ-HPRDG---LRMQVSAGGNIGERL---MAVGARHYGDIRATAGDWLERVEI 140
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
A R+ + SGG ++RL IA ++T P+L+F+DEPT GLD
Sbjct: 141 DAARI--DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 4e-13
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 47/185 (25%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-IMLGTL 95
+A++GP GSGKS+LL AL G L ++G+V + G +AYV+QE I G
Sbjct: 34 VAIVGPVGSGKSSLLSALLGELE---KLSGSVSVP--------GSIAYVSQEPWIQNG-- 80
Query: 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA-----DRL-------IGNWH 143
T+RE I + + E VI + CA + L IG
Sbjct: 81 TIRENILFG------KPFDEERYEKVI---------KACALEPDLEILPDGDLTEIGE-- 123
Query: 144 WRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV-KILKNIAHDGRTII 200
+GI SGG+K+R+S+A + + + LD+P S +D+ + + + + +T I
Sbjct: 124 -KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRI 182
Query: 201 SSIHQ 205
HQ
Sbjct: 183 LVTHQ 187
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 4e-13
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRL 77
P +L GLT P ++A++GPSGSGKST+ AL L G VLL+G +
Sbjct: 492 PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVA-ALLQNLY--QPTGGQVLLDGVPLVQY 548
Query: 78 D----YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE---MG 130
D + VA V QE ++ +VRE IAY ++ +EEI + A M
Sbjct: 549 DHHYLHRQVALVGQEPVLFSG-SVRENIAYGL-----TDTPDEEIMAAAKAANAHDFIME 602
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
+ D +G +SGG+K+R++IA ++ +P++L LDE TS LD A +++ +
Sbjct: 603 FPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD-AECEQLLQESR 660
Query: 191 NIAHDGRTIISSIHQPS 207
+ A RT++ H+ S
Sbjct: 661 SRA--SRTVLLIAHRLS 675
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 4e-13
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK---------RRLDYGGVAYV 85
I +MG SGSGKSTL+ L RL G +L++GK R L ++ V
Sbjct: 55 EIFVIMGLSGSGKSTLVRLL-NRL--IEPTRGEILVDGKDIAKLSAAELRELRRKKISMV 111
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
Q +L TV E +A+ ++ + E + EA+ +GLE AD+
Sbjct: 112 FQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNE---- 164
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+SGG ++R+ +A + P +L +DE S LD
Sbjct: 165 -LSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 34/176 (19%)
Query: 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT 65
E V+V +FG RR+L+ ++ +P +IL ++GP+G+GKSTL+ + G ++ +
Sbjct: 8 ENVSV---SFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---E 58
Query: 66 GNVLLNGKKRRLDYGGVAYVTQENIMLGT---LTVRETIAYSAHLRLPSNMNNEEITDVI 122
G + NGK R + YV Q+ + L T LTV + LRL E+I +
Sbjct: 59 GVIKRNGKLR------IGYVPQK-LYLDTTLPLTV------NRFLRLRPGTKKEDILPAL 105
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+ ++ +L SGGE +R+ +A +L RPQLL LDEPT G+D
Sbjct: 106 KRVQAGHLIDAPMQKL---------SGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL----SGNVVMTG---NVLLNGKKRRLDYGGVAYVTQE 88
I +MG SGSGKSTLL + RL SG V++ G + + R L ++ V Q
Sbjct: 52 IFVIMGLSGSGKSTLLRCI-NRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
+L TV E +A+ ++ + E + EA+ +GLE + +S
Sbjct: 111 FALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LS 162
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
GG ++R+ +A + P +L +DE S LD
Sbjct: 163 GGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (167), Expect = 1e-12
Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 30/231 (12%)
Query: 33 PAR-ILAVMGPSGSGKSTLL-------DALAG-RLSGNVVMTGNVLLNGK-----KRRLD 78
PAR + ++MGP+GSGK+T L D ++G R SG+V++ G + N + +RR+
Sbjct: 45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRV- 103
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
G+ + + N ++ AH +P +E V + +TE+GL D
Sbjct: 104 --GMLF-QRPNPFPMSIMDNVLAGVRAHKLVP----RKEFRGVAQARLTEVGLWDAVKDR 156
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
+ + +R +SGG+++ L +A + P++L LDEPTS LD + + ++++A D T
Sbjct: 157 LSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLT 214
Query: 199 IISSIHQPS-----SEVFALFDDLFLLSGGET-VYFGEAKSAPTFFAEAGF 243
+I H + S+ ALF D L+ G T F K A T AG
Sbjct: 215 VIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGL 265
|
Length = 276 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 55/214 (25%), Positives = 107/214 (50%), Gaps = 24/214 (11%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGK--- 73
L ++ +A++G +GSGKSTL L G L +G + + G VL
Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD 78
Query: 74 -KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN-MNNEEITDVIEEAITEMGL 131
+R++ G+ + +N +G TV++ +A+ L + + EE+ + +++A+ ++G+
Sbjct: 79 VRRQV---GMVFQNPDNQFVGA-TVQDDVAFG----LENIGVPREEMVERVDQALRQVGM 130
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
ED +R +SGG+K+R++IA + +P ++ LDE TS LD V++ ++
Sbjct: 131 EDFLNR-----EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185
Query: 192 IAHDGR-TIISSIHQPSSEVFALFDDLFLLSGGE 224
+ T++S H A D + +++ GE
Sbjct: 186 LKEQKGITVLSITHDLDEAAQA--DRVIVMNKGE 217
|
Length = 279 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 27/206 (13%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMT-GNVLLNGKKRRLDYGGVAYVTQE--NIM 91
+LA++G SGSGKS A+ G L + T G +LL+G+ ++ + IM
Sbjct: 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR----PLLPLSIRGRHIATIM 68
Query: 92 LGTLT-----------VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG 140
T ET+ + +L +I EA+ +GL D + L
Sbjct: 69 QNPRTAFNPLFTMGNHAIETL--RSLGKLSKQA-----RALILEALEAVGLPDPEEVL-- 119
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+ +SGG +R+ IAL +L P L DEPT+ LD V+K+L+ + T I
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179
Query: 201 SSIHQPSSEVFALFDDLFLLSGGETV 226
I V + D++ ++ G V
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIV 205
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 17/158 (10%)
Query: 32 EPARILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK---KRRLDYGG----V 82
E ++ A++GPSG GKST L L L +V + G VLL+G+ K +D V
Sbjct: 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRV 86
Query: 83 AYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIG 140
V Q+ N +++ + +AY R + +++ +++E+++ L ++ DRL
Sbjct: 87 GMVFQQPNPF--PMSIYDNVAYGP--RTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKK 142
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+ G+SGG+++RL IA + P++L +DEPTS LD
Sbjct: 143 SA--LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 23/173 (13%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVLLNGK 73
G R L+ ++ EP +A++G SGSGKSTL+ L R SG +++ G+ L +
Sbjct: 342 GRDRPALDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEPDSGQILLDGHDLADYT 400
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
L VA V+Q +++L T+ IAY + EI + A +D
Sbjct: 401 LASLR-RQVALVSQ-DVVLFNDTIANNIAYGR----TEQADRAEIERALAAA----YAQD 450
Query: 134 CADRL-------IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
D+L IG +SGG+++RL+IA +L +L LDE TS LD+
Sbjct: 451 FVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDN 502
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 2e-12
Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 31/245 (12%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG---NVVMTGNVLLNGKK---RRL 77
L+G++ E + A++GPSG GKST L L R++ N+ +TG + G+ ++
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 78 DY----GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-E 132
D V V Q+ +V + +AY L++ + E I +EE++ + + +
Sbjct: 79 DLVELRKEVGMVFQQPTPF-PFSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWK 135
Query: 133 DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
+ D L + + + SGG+++R+ IA + RP+++ LDEPTS LD ++ + + L +
Sbjct: 136 ETKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 193 AHDGRTIISSIH--QPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRN 250
H T I H Q + + D L G+ + G PT E F P ++
Sbjct: 194 KHQ-YTFIMVTHNLQQAGRI---SDQTAFLMNGDLIEAG-----PT---EEMFIAPKKQI 241
Query: 251 PSDHF 255
SD+
Sbjct: 242 TSDYL 246
|
Length = 251 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-12
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTG---NVLLNGKKRRLDYGGVAYV 85
++A++G SGSGKSTLL L G SG+V+ G + L + K L + ++
Sbjct: 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFI 92
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
Q + +L T E +A L EI E + +GLE A + R
Sbjct: 93 YQFHHLLPDFTALENVAMPL---LIGKKKPAEINSRALEMLAAVGLEHRA-------NHR 142
Query: 146 G--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
+SGGE++R++IA ++ P+L+ DEPT LD+ A
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 16/211 (7%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
L G++ E I+ +GP+G+GK+T L L+G L SG V + G V +K+ L
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRI 96
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHL-RLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
GV + Q+ + L V ++ A + LP ++E + LE+ D +
Sbjct: 97 GVVF-GQKTQLWWDLPVIDSFYLLAAIYDLPP----ARFKKRLDELSELLDLEELLDTPV 151
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRT 198
R +S G++ R IA +L P++LFLDEPT GLD A + LK + G T
Sbjct: 152 -----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTT 206
Query: 199 IISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
++ + H ++ AL + ++ G +Y G
Sbjct: 207 VLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 15/183 (8%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK---K 74
T+++L G++ +++ A++GPSG GKST L L L V + G V + +
Sbjct: 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE 78
Query: 75 RRLDYGGV---AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131
RR++ + + L ++V + +AY +++ EI D++E A+ +
Sbjct: 79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG--VKIVGWRPKLEIDDIVESALKD--- 133
Query: 132 EDCADRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
D D + H + SGG+++RL IA + +P++L +DEP GLD A+ V ++
Sbjct: 134 ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI 193
Query: 190 KNI 192
+++
Sbjct: 194 QSL 196
|
Length = 261 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-12
Identities = 61/177 (34%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKS-TLLDALAGRL---------SGNVVMTGN 67
R ++N ++ E LA++G SGSGKS T L L RL SG++ G
Sbjct: 19 QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGE 76
Query: 68 VLLNGKKRRLDYGGV-----AYVTQENIM-LGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
LL+ ++ L GV A + QE ++ L L E Y L L M E
Sbjct: 77 SLLHASEQTLR--GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEV-LSLHRGMRREAARGE 133
Query: 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
I + +G+ A RL H +SGGE++R+ IA+ +LTRP+LL DEPT+ LD
Sbjct: 134 ILNCLDRVGIRQAAKRLTDYPH--QLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
|
Length = 529 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 4e-12
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 22/209 (10%)
Query: 36 ILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLG 93
+ A++GPSG GKST + L L N + G V + G+ Y V + +G
Sbjct: 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI---YEPDVDVVELRKNVG 96
Query: 94 T---------LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWH 143
+++ + +AY + N +++ V+E A+ L ++ +DRL
Sbjct: 97 MVFQKPNPFPMSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA- 152
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGG+++RL IA + +P+++ DEPTS LD + + ++ N+ D +I +
Sbjct: 153 -LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTH 211
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ + + + FL+ GE + FG+ +
Sbjct: 212 NMQQAARISDYTGFFLM--GELIEFGQTR 238
|
Length = 258 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 32/207 (15%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA-YVTQENIMLGT 94
I A++G SG GKSTLL LAG G ++L+G +D V Y N+M +
Sbjct: 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDG----VDLSHVPPYQRPINMMFQS 99
Query: 95 ------LTVRETIAYS-AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147
+TV + IA+ +LP EI + E + + +++ A R +
Sbjct: 100 YALFPHMTVEQNIAFGLKQDKLPKA----EIASRVNEMLGLVHMQEFAKR-----KPHQL 150
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA----AAFFVVKILKNIAHDGRTIISSI 203
SGG+++R+++A + RP+LL LDEP LD VV IL+ + G T +
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV---GVTCVMVT 207
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFGE 230
H E + + +++ G+ V GE
Sbjct: 208 HD-QEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 5e-12
Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 33/201 (16%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNV-LLNGKKRRLDYGGVAYVTQENIM 91
+ ++G +G+GKSTLL LAG SG V + G V L L GG
Sbjct: 50 RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL------LGLGGG--------F 95
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151
LT RE I + L ++ +EI + I+E I L D D + + S G
Sbjct: 96 NPELTGRENIYLNGRL---LGLSRKEIDEKIDEIIEFSELGDFIDLPVKTY-----SSGM 147
Query: 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH---DGRTIISSIHQPSS 208
K RL+ A+ P +L +DE + D A F K + + G+T+I H PSS
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSS 204
Query: 209 EVFALFDDLFLLSGGETVYFG 229
+ L D +L G+ + G
Sbjct: 205 -IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK----KRRLD 78
+++GL+ + + ++GP+G+GK+T L L G G++ L G+ + R
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP---DAGSISLCGEPVPSRARHA 78
Query: 79 YGGVAYVTQENIMLGTLTVRETI-AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
V V Q + + TVRE + + + L + + ++E A LE+ AD
Sbjct: 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA----KLENKADA 134
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
+G +SGG K+RL++A ++ P +L LDEPT+GLD A + + L+++ G+
Sbjct: 135 KVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK 189
Query: 198 TIISSIH 204
TI+ + H
Sbjct: 190 TILLTTH 196
|
Length = 306 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 6e-12
Identities = 64/195 (32%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV----AYVTQENI 90
+I A +G +G+GK+T L L G L +G VL+ GK + V Q NI
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNI 1013
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG--LEDCADRLIGNWHWRGIS 148
+ LTV E I + A L+ S EEA EM LED N + +S
Sbjct: 1014 LFHHLTVAEHILFYAQLKGRSW----------EEAQLEMEAMLEDTGLHHKRNEEAQDLS 1063
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
GG +++LS+A+ + +++ LDEPTSG+D + + +L GRTII S H
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHH-MD 1121
Query: 209 EVFALFDDLFLLSGG 223
E L D + ++S G
Sbjct: 1122 EADLLGDRIAIISQG 1136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 6e-12
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 26/183 (14%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD------YGGVAYVT--- 86
IL + G G+G++ L AL G +G +LL+GK R+ G+AYV
Sbjct: 287 ILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDR 343
Query: 87 -QENIMLGTLTVRE--TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR--LIGN 141
E ++L +++ E T+A ++ + + E I + + IG
Sbjct: 344 KSEGLVLD-MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSPEQPIGT 401
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI-- 199
+SGG ++++ +A + T P++L LDEPT G+D A + ++++ +A +G+ I
Sbjct: 402 -----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM 456
Query: 200 ISS 202
ISS
Sbjct: 457 ISS 459
|
Length = 500 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 6e-12
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 29/203 (14%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI-ML 92
+ ++G +G+GKSTLL +AG SG V +TG VA + +
Sbjct: 56 VGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK--------------VAPLIELGAGFD 101
Query: 93 GTLTVRETIAYSAHLR-LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151
LT RE I +LR L + +EI + ++E I L D D+ + + S G
Sbjct: 102 PELTGRENI----YLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGM 152
Query: 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVF 211
RL+ ++ P +L LDE + D+A ++ L + +TI+ H +
Sbjct: 153 YARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIK 211
Query: 212 ALFDDLFLLSGGETVYFGEAKSA 234
D L G+ G +
Sbjct: 212 QYCDRAIWLEHGQIRMEGSPEEV 234
|
Length = 249 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 7e-12
Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 27/207 (13%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK---------RRLDYGGV 82
+ I A++G +G+GKSTL+ L G + +G + ++GK+ RL G+
Sbjct: 28 KKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRL---GI 81
Query: 83 AYVTQENIML-GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
V Q + ML TLTV E I ++ + I+E GL D + +
Sbjct: 82 GMVHQ-HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD 140
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGL--DSAAAFFVVKILKNIAHDGRTI 199
+S GE++R+ I + +LL LDEPT+ L A F IL+ +A +G+TI
Sbjct: 141 -----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE--ILRRLAAEGKTI 193
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETV 226
I H+ EV A+ D + +L G+ V
Sbjct: 194 IFITHK-LKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 7e-12
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 24/171 (14%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY 79
++LN ++ +A+ GPSG GKSTLL +A +S +G +L G+
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVS-TL 70
Query: 80 G------GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT-DVIEEAITEMGLE 132
V+Y Q + G +T+ +L P + N + + L
Sbjct: 71 KPEAYRQQVSYCAQTPALFG-----DTV--EDNLIFPWQIRNRRPDRAAALDLLARFALP 123
Query: 133 DCA-DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
D + I +SGGEK+R+++ + P++L LDE TS LD +
Sbjct: 124 DSILTKNITE-----LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
|
Length = 223 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 8e-12
Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 39/229 (17%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74
F P R +LNG++ + +A++G SG+GKST+L L N +G++ ++G+
Sbjct: 270 FAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQD 326
Query: 75 RRLDYGGVAYVTQENI--MLGTL---------TVRETIAY----SAHLRLPSNMNNEEIT 119
R VTQ+++ +G + T+ I Y + + + +I
Sbjct: 327 IRD-------VTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH 379
Query: 120 DVIEEAITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGL 177
D I+ L + D +G RG +SGGEK+R++IA IL P +L LDE TS L
Sbjct: 380 DFIQS------LPEGYDTGVGE---RGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430
Query: 178 DSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
D+ + L+ ++ GRT + H+ S+ + A D++ +L G V
Sbjct: 431 DTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDA--DEIIVLDNGRIV 476
|
Length = 497 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 8e-12
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 42/224 (18%)
Query: 36 ILAVMGPSGSGKSTLLDAL--------AGRLSGNVVMTG------NVLLNGKKRRLDYGG 81
+ A++GPSG GKST L L A R+ G+V + G V L ++R
Sbjct: 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKR----- 127
Query: 82 VAYVTQENIMLGTLTVRETIAYSAH----------LRLPSNMNNEEITDVIEEAITEMGL 131
V V Q ++RE I+Y RL + + +++E ++ + L
Sbjct: 128 VGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL 186
Query: 132 -EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
++ DRL N G+SGG+++RL IA + P+++ +DEP S LD A + +++
Sbjct: 187 WDEVNDRLDDNA--LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIE 244
Query: 191 NIAHDGRTII--SSIHQPS--SEVFALFDDLFLLSGGETVYFGE 230
+A + ++ ++ Q + S+ A+F L+GGE V + +
Sbjct: 245 ELAEEYTVVVVTHNMQQAARISDQTAVF-----LTGGELVEYDD 283
|
Length = 305 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 9e-12
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 43/232 (18%)
Query: 5 WEEVTVVVPNFGSGPTRRL-----LNGLT-GYA--------------EPARILAVMGPSG 44
P GS P+ RL L +T GY+ +P + +A++G SG
Sbjct: 456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSG 515
Query: 45 SGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101
SGKST+ +AG SG ++ G + R + VA V Q+ I L TVR+ +
Sbjct: 516 SGKSTIAKLVAGLYQPWSGEILFDG-IPREEIPREVLANSVAMVDQD-IFLFEGTVRDNL 573
Query: 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW------RGISGGEKKRL 155
L P+ + + + + A + + D G + +SGG+++RL
Sbjct: 574 T----LWDPT-IPDAD----LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624
Query: 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207
IA ++ P +L LDE TS LD I N+ G T I H+ S
Sbjct: 625 EIARALVRNPSILILDEATSALDPETE---KIIDDNLRRRGCTCIIVAHRLS 673
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 9e-12
Identities = 50/156 (32%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG-------------V 82
I +MG SGSGKSTLL A+ G N V G+VL+ +D V
Sbjct: 52 ICVLMGLSGSGKSTLLRAVNGL---NPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRV 108
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
+ V Q+ +L TV E +A+ + M E ++E + +GL ADR G
Sbjct: 109 SMVFQQFALLPWRTVEENVAFGLEM---QGMPKAERRKRVDEQLELVGLAQWADRKPGE- 164
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+SGG ++R+ +A T +L +DEP S LD
Sbjct: 165 ----LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 9e-12
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 37/185 (20%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRL---SGNVV--MTGNVLLN------GKKRRL---D 78
P +L ++G SGSGK+TLL ++GRL +G V M + ++RRL +
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTE 90
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHL--RLPSNMNN------EEITDVIEEAITEMG 130
+G +N G +R ++ ++ RL + E D +EE E+
Sbjct: 91 WG----FVHQNPRDG---LRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEE--VEID 141
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
L+ D R SGG ++RL IA ++TRP+L+F+DEPT GLD + ++ +L+
Sbjct: 142 LDRIDDLP------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 195
Query: 191 NIAHD 195
+ +
Sbjct: 196 GLVRE 200
|
Length = 258 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 38/217 (17%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML 92
I+ +G +G+GKST L L G L + +G V +NGK Y+ +++
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKDPFRRRE--EYLRSIGLVM 103
Query: 93 GT-------LTVRETIAYSAHLRLPSNMNNEEITDV--------IEEAITEMGLEDCADR 137
G L +++ + I ++ ++ + LE
Sbjct: 104 GQKLQLWWDLPALDSLEV-----------LKLIYEIPDDEFAERLDFLTEILDLEG---- 148
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDG 196
W R +S G++ R +A +L P++LFLDEPT GLD A + + LK
Sbjct: 149 -FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
T++ + H ++ L D + L+ G+ V+ G
Sbjct: 208 ATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQ 243
|
Length = 325 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 33/209 (15%)
Query: 38 AVMGPSGSGKSTLLDALAGRL---SGNVVMTG------NVLLNGKKRRLDYGGVAYVTQE 88
++G +GSGKSTL+ L G L SG +++ G V L+ ++++ G+ + E
Sbjct: 37 GLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKV---GLVFQYPE 93
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGL--EDCADRLIGNWHW 144
L T+ + IA+ P N+ + EEI + ++ A+ +GL ED D+
Sbjct: 94 Y-QLFEETIEKDIAFG-----PINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFE--- 144
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD--GRTIISS 202
+SGG+K+R++IA + P++L LDEPT+GLD ++ +K + H TII
Sbjct: 145 --LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL-HKEYNMTIILV 201
Query: 203 IHQPSSE-VFALFDDLFLLSGGETVYFGE 230
H S E V L D + +++ G+ G
Sbjct: 202 SH--SMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (159), Expect = 1e-11
Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 29/206 (14%)
Query: 38 AVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRLDYG------GVAYVTQEN 89
A++G +GSGKSTLL L G L + V G+++++ ++ + GV + E+
Sbjct: 36 ALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95
Query: 90 IMLGTLTVRETIAYSAHLRLPSN--MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG- 146
+ TV + +A+ P N + E+ + E + +GL + W
Sbjct: 96 QLFEE-TVLKDVAFG-----PQNFGIPKEKAEKIAAEKLEMVGLA--------DEFWEKS 141
Query: 147 ---ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGG+ +R++IA + P++L LDEPT+GLD A ++++ ++I G+T++
Sbjct: 142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFG 229
H +V D ++LL G + G
Sbjct: 202 HL-MDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGK------ 73
+L+G+ I A+MGPSGSGKSTLL L ++G V L+G+
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 74 ----KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM 129
+RR V V Q + L++ E +A L + +E+ + + A+ +
Sbjct: 77 VIELRRR-----VQMVFQIPNPIPNLSIFENVALGLKLNRLVK-SKKELQERVRWALEKA 130
Query: 130 GL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
L ++ DRL + +SGG+++RL IA + +P++L DEPT+ LD + +
Sbjct: 131 QLWDEVKDRL--DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188
Query: 189 LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236
+ D TI+ H P + + D + L G+ V +G + T
Sbjct: 189 FLELKKD-MTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVFT 234
|
Length = 250 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 37/215 (17%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK----------KRRLDYGGVAYV 85
I ++GPSG+GKSTL+ L RL G++L++G +R+ + V
Sbjct: 31 IYTIVGPSGAGKSTLIK-LINRLIDPT--EGSILIDGVDIKTIDVIDLRRK-----IGMV 82
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHW 144
Q+ + TV++ I Y L+ N++ +E ++ +GL + A R + N
Sbjct: 83 FQQPHLFEG-TVKDNIEYGPMLKGEKNVD-------VEYYLSIVGLNKEYATRDVKN--- 131
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSI 203
+SGGE +R+SIA + P++L LDEPTS LD + + +++ + + T+I
Sbjct: 132 --LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT 189
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFF 238
H + + D L+ G V + + FF
Sbjct: 190 HN-MEQAKRIGDYTAFLNKGILVEYAKTY---DFF 220
|
Length = 241 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 62/200 (31%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-----LSGNVVMTGNVLLNGKKRRL 77
+L GL P + A+MGP+GSGKSTL LAGR G V G LL
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE-- 73
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMN------------NEEITDVIEEA 125
D G E I + E S L + +N + D++EE
Sbjct: 74 DRAG------EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEK 127
Query: 126 ITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184
I + + ED R + G SGGEKKR I + P+L LDE SGLD A
Sbjct: 128 IALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKI 183
Query: 185 VVKILKNIAHDGRTIISSIH 204
V + ++ R+ I H
Sbjct: 184 VADGVNSLRDGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 32/216 (14%)
Query: 35 RILAVMGPSGSGKSTLL-------DALAG-RLSGNVVMTG---------NVLLNGKKRRL 77
+ A +GPSG GKST L D + ++ G + + G VLL K
Sbjct: 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAK---- 87
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCAD 136
V V Q+ ++ + +AY L + N +++ +++E+++T +GL E+ D
Sbjct: 88 ----VGMVFQKPNPFPK-SIYDNVAYGPKLHGLAK-NKKKLDEIVEKSLTSVGLWEELGD 141
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
RL + +SGG+++RL IA I +P +L +DEP S LD A + +++ + +
Sbjct: 142 RLKDSAF--ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN- 198
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
TII H + + D + G V + +
Sbjct: 199 FTIIVVTHS-MKQAKKVSDRVAFFQSGRIVEYNTTQ 233
|
Length = 251 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
Query: 31 AEPARILAVMGPSGSGKSTL---LDALAGRLSGNVVMTGNVL-----LNGKKRRLDYGGV 82
L ++GPSG+GKS+L L+ L SG + + GN + K R V
Sbjct: 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNV 84
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
V Q+ + LTV++ + A R+ ++ ++ E+ + + L+ ADR +
Sbjct: 85 GMVFQQYNLWPHLTVQQNLI-EAPCRV-LGLSKDQALARAEKLLERLRLKPYADR----F 138
Query: 143 --HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
H +SGG+++R++IA ++ PQ+L DEPT+ LD +V I++ +A G T +
Sbjct: 139 PLH---LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQV 195
Query: 201 SSIHQ 205
H+
Sbjct: 196 IVTHE 200
|
Length = 242 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 24/187 (12%)
Query: 36 ILAVMGPSGSGKSTLLDAL--------AGRLSGNVVMTGNVLLNGK------KRRLDYGG 81
+ A+MGPSG GKSTLL R+ G V + G + + +R
Sbjct: 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRRE----- 86
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIG 140
V V Q LT+ + +A L + +E+ + +E A+ + L ++ DRL
Sbjct: 87 VGMVFQYPNPFPHLTIYDNVAIGVKLNGLVK-SKKELDERVEWALKKAALWDEVKDRL-- 143
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
N + +SGG+++RL IA + +P++L +DEPT+ +D + ++L + + TI+
Sbjct: 144 NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIV 202
Query: 201 SSIHQPS 207
H P+
Sbjct: 203 LVTHSPA 209
|
Length = 253 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 2e-11
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 19/170 (11%)
Query: 35 RILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML 92
++ A++GPSG GKST + L L G V + G V G+ Y + + +
Sbjct: 34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI---YDPRININRLRRQI 90
Query: 93 GT---------LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNW 142
G +++ E +AY +R+ + + ++ +++E A+ L ++ D+L N
Sbjct: 91 GMVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKL--NK 146
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
G+SGG+++RL IA + +P++L +DEP S LD A V +++ ++
Sbjct: 147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL 196
|
Length = 259 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 46/205 (22%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK------- 73
+L+ ++ EP +A++GPSGSGKSTLL L L +G+V +G+
Sbjct: 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLAGLDV 522
Query: 74 ---KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
+R+L GV V Q N L + ++ E IA A L L D EA G
Sbjct: 523 QAVRRQL---GV--VLQ-NGRLMSGSIFENIAGGAPLTL----------DEAWEAARMAG 566
Query: 131 LEDCADRLIGNWHW------RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD------ 178
L + + H +SGG+++RL IA ++ +P++L DE TS LD
Sbjct: 567 LAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI 626
Query: 179 ---SAAAFFVVKILKNIAHDGRTII 200
S V +I+ IAH TI
Sbjct: 627 VSESLERLKVTRIV--IAHRLSTIR 649
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 54/169 (31%), Positives = 76/169 (44%), Gaps = 45/169 (26%)
Query: 35 RILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK------------KRRLDYG 80
R+ A +GPSG GKSTLL L N + G + L+G+ +RR
Sbjct: 52 RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRR---- 107
Query: 81 GVAYVTQ----------ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
V V Q EN++ G LRL N + + +E ++
Sbjct: 108 -VGMVFQRPNPFPKSIYENVVYG-------------LRLQGINNRRVLDEAVERSLRGAA 153
Query: 131 L-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
L ++ DRL N G+SGG+++RL IA I P++L LDEPTS LD
Sbjct: 154 LWDEVKDRLHENAF--GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200
|
Length = 272 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-11
Identities = 52/189 (27%), Positives = 100/189 (52%), Gaps = 13/189 (6%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLS-GNVVMTGNVLLNGKKRRL 77
R+ L G+T + P + + G SG+GKSTLL + G R S G + +G+ + K R +
Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREV 74
Query: 78 DY--GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
+ + + Q++ +L TV + +A + + + ++I + A+ ++GL D A
Sbjct: 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPL---IIAGASGDDIRRRVSAALDKVGLLDKA 131
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
N+ + +SGGE++R+ IA ++ +P +L DEPT LD A + ++++ +
Sbjct: 132 K----NFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186
Query: 196 GRTIISSIH 204
G T++ + H
Sbjct: 187 GVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-11
Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 11 VVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70
V + + P + L+GL P +A++GPSG+GKSTL L L +G +LL
Sbjct: 343 VNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL---LRFYDPQSGRILL 399
Query: 71 NGKK-RRLD----YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD--VIE 123
+G R+LD +A V Q+ ++ +V E I Y + TD V
Sbjct: 400 DGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYG----------RPDATDEEVEA 448
Query: 124 EAITE------MGLEDCADRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTS 175
A L + D +G RG+ SGG+++R++IA IL +L LDE TS
Sbjct: 449 AARAAHAHEFISALPEGYDTYLGE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505
Query: 176 GLDSAAAFFVVKILKNIAHDGRTII 200
LD+ + V + L+ + T+I
Sbjct: 506 ALDAESEQLVQQALETLMKGRTTLI 530
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 16/223 (7%)
Query: 11 VVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-----GRLSGNVVMT 65
+V FG + L+G+ P + + G +G+GKSTL+ L+ G G + +
Sbjct: 7 IVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWS 63
Query: 66 GNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN-MNNEEITDVIEE 124
G+ L R + G+ + QE ++ L+V E I + LP M + +
Sbjct: 64 GSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKN 123
Query: 125 AITEMGLEDCAD-RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
+ E+ L+ R +G++ GG+++ + IA + + +LL LDEP+S L
Sbjct: 124 LLRELQLDADNVTRPVGDY-----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178
Query: 184 FVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
++ I++++ G + H+ +EV A+ D + ++ G+ V
Sbjct: 179 ILLDIIRDLKAHGVACVYISHK-LNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 31/165 (18%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV--------------LLNGKKRRL- 77
P +L ++G SGSGKSTLL LAGRL+ G L ++RRL
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQLSEAERRRLM 84
Query: 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHL-RLPSNMNNEEITDVIEEAITEMG-LED 133
++G V +N G +R ++ A++ + ++ A + +E
Sbjct: 85 RTEWGFV----HQNPRDG---LRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
R+ + R SGG ++RL IA ++TRP+L+F+DEPT GLD
Sbjct: 138 DPTRI--DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 40/220 (18%)
Query: 35 RILAVMGPSGSGKSTLLDAL--------AGRLSGNVVMTGNVLLNGK------KRRLDYG 80
++ A++GPSG GKST L + A R+ G + G + + +RR
Sbjct: 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRR---- 121
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLI 139
+ V Q+ ++ + +AY L++ + +I + +EE++ L D D+L
Sbjct: 122 -IGMVFQKPNPFPK-SIYDNVAYG--LKIQGY--DGDIDERVEESLRRAALWDEVKDQL- 174
Query: 140 GNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
G+ SGG+++RL IA I P+++ +DEP S LD A + +++ +A +
Sbjct: 175 ---DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYT 231
Query: 198 TIISS--IHQPS--SEVFALFDDLFLLSGGETVYFGEAKS 233
+I + + Q + S+ A+F L+GGE V F +
Sbjct: 232 VVIVTHNMQQAARISDKTAVF-----LTGGELVEFDDTDK 266
|
Length = 285 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 27/163 (16%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMT---GNVLLNGKK---RRLDYGGVAYVTQE 88
++ A++GPSG GKST L L R++ + G +LL+G+ +D V +
Sbjct: 33 QVTALIGPSGCGKSTFLRCL-NRMNDLIPGARVEGEILLDGENIYDPHVD------VVEL 85
Query: 89 NIMLGTL---------TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRL 138
+G + ++ E +AY LR+ + + + +E ++ L ++ DRL
Sbjct: 86 RRRVGMVFQKPNPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWDEVKDRL 143
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+ G+SGG+++RL IA + P++L +DEP S LD A
Sbjct: 144 --HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIA 184
|
Length = 253 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 3e-11
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 27/197 (13%)
Query: 36 ILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK----------KRRLDYGGVA 83
I A++GPSG GKST L L L V +TGNV L G+ + R G V
Sbjct: 33 ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMV- 91
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNW 142
Q N ++ E + Y LRL + + + +E ++ + + ++ D L +
Sbjct: 92 -FQQPNPF--PFSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHL--HE 144
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII-- 200
+SGG+++R+ IA + +P ++ LDEPTS LD ++ + +L + D TII
Sbjct: 145 SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILV 203
Query: 201 -SSIHQPS--SEVFALF 214
S+HQ S S+ A F
Sbjct: 204 THSMHQASRISDKTAFF 220
|
Length = 252 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 37/252 (14%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDAL-------AGRLS 59
EV + +G +L G++ A +++++G SGSGKST L + AG +
Sbjct: 8 EVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 60 GN-----VVMTGNVLLNGKKRR---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS 111
N + + L +R + V Q + +TV E + + P
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV-----IEAPV 119
Query: 112 NMNNEEITDVIEEA---ITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLL 168
++ + IE A + ++G+ + AD + +SGG+++R++IA + P+++
Sbjct: 120 HVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH-----LSGGQQQRVAIARALAMEPEVM 174
Query: 169 FLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH------QPSSEVFALFDDLFLLSG 222
DEPTS LD V+K+++++A +GRT++ H SS V L G
Sbjct: 175 LFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234
Query: 223 GETVYFGEAKSA 234
FG +S
Sbjct: 235 PPEQVFGNPQSP 246
|
Length = 256 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 4e-11
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL--------SGNVVMTGNVL--LNGKKRRLDYGGVAYV 85
I V+G SG+GKSTL+ R SG V++ G L L+ K+ R + +
Sbjct: 33 IFGVIGASGAGKSTLI-----RCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMI 87
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
Q +L + TV + +A L L + EI + E + +GL D ADR
Sbjct: 88 FQHFNLLSSRTVFDNVALP--LEL-AGTPKAEIKARVTELLELVGLSDKADRYPAQ---- 140
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIH 204
+SGG+K+R++IA + + P++L DE TS LD A ++++LK+I + G TI+ H
Sbjct: 141 -LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199
Query: 205 Q 205
+
Sbjct: 200 E 200
|
Length = 343 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 9e-11
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 26/222 (11%)
Query: 38 AVMGPSGSGKSTLLDALAGRL-----SGNVVMTGNVLLNGKK----RRLDYGGVAYVTQE 88
A++G +GSGKST+ + G L + + + L K R + G+ + +
Sbjct: 37 ALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR--EKVGIVFQNPD 94
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
N +G TV + +A+ R + E+ ++ + + ++G+ D D N +S
Sbjct: 95 NQFVGA-TVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPAN-----LS 145
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPS 207
GG+K+R++IA + P+++ LDE TS LD A ++K+++ + T+IS H
Sbjct: 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205
Query: 208 SEVFALFDDLFLLSGGETVYFG---EAKSAPTFFAEAGFPCP 246
A D + +L G+ + G E S E G P
Sbjct: 206 EANMA--DQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIP 245
|
Length = 282 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 35/192 (18%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK---------RRLDYGGVA 83
P + ++GPSGSGKSTL L RL G VL++G RR +
Sbjct: 482 PGEFIGIVGPSGSGKSTL-TKLLQRL--YTPQHGQVLVDGVDLAIADPAWLRR----QMG 534
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL----- 138
V QEN++ ++R+ IA E + A G D L
Sbjct: 535 VVLQENVLFSR-SIRDNIALCN-----PGAPFEHVI----HAAKLAGAHDFISELPQGYN 584
Query: 139 --IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
+G +SGG+++R++IA ++ P++L DE TS LD + +++ ++ I G
Sbjct: 585 TEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-G 642
Query: 197 RTIISSIHQPSS 208
RT+I H+ S+
Sbjct: 643 RTVIIIAHRLST 654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKKRRLDYGG 81
L +T R+ A++GPSG GKSTLL L +TG++L NG+ +D G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENI-MDSGA 80
Query: 82 VAYVTQENIMLGTL---------TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL- 131
+ I G + ++ E +AY R+ N + + ++E+++ L
Sbjct: 81 DVVALRRKI--GMVFQRPNPFPKSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALW 136
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
++ DRL + +SGG+++RL IA + P+++ +DEP S LD A + ++++
Sbjct: 137 DEVKDRL--HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 192 IAHDGRTII 200
+ + II
Sbjct: 195 LKKEYTVII 203
|
Length = 253 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQE 88
+ L V G +G+GK+TLL LAG L SG + + G G + R +AY+
Sbjct: 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRF----MAYLGHL 90
Query: 89 NIMLGTLTVRETIAYSAHL------RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
+ L+ E + + L ++P + A+ +GL D L+
Sbjct: 91 PGLKADLSTLENLHFLCGLHGRRAKQMPGS------------ALAIVGLAGYEDTLV--- 135
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202
R +S G+KKRL++A L+ L LDEP + LD V +++ G + +
Sbjct: 136 --RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVT 193
Query: 203 IH 204
H
Sbjct: 194 TH 195
|
Length = 214 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 1e-10
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLL-------DALAG-RLSGNVVMTGNVLLNGKKR 75
L G++ E ++A +GPSG GKST L D + RL G + + G + + K
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD-KGV 77
Query: 76 RLD--YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
++D V V Q ++ E +AY LR+ +N I +EE + L D
Sbjct: 78 QVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAALWD 134
Query: 134 -CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
D+L + +SGG+++RL IA + P +L +DEP S LD + V +++ +
Sbjct: 135 EVKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 193 AHDGRTIISSIH 204
D TI+ H
Sbjct: 193 KKD-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 33/159 (20%)
Query: 33 PAR-ILAVMGPSGSGKSTLLDALAGRLS----GNVVMTGNVL--------LNGKKRRLDY 79
PA+ I A+ G SG+GK++L++A++G L+ G +V+ G VL L +KRR
Sbjct: 22 PAQGITAIFGRSGAGKTSLINAISG-LTRPQKGRIVLNGRVLFDAEKGICLPPEKRR--- 77
Query: 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
+ YV Q+ + VR + Y + + ++ +G+E DR
Sbjct: 78 --IGYVFQDARLFPHYKVRGNLRYGM-----AKSMVAQFDKIVAL----LGIEPLLDRYP 126
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
G+ +SGGEK+R++I +LT P+LL +DEP + LD
Sbjct: 127 GS-----LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 31/241 (12%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKST---LLDALAGRLSGNVVMTGNVLLNGK----KRR 76
LNG++ ++++G +GSGKST L+D L G V + G +L +R+
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
+ G+ + +N +G TV + +A+ + EE+ ++EA+ + + D
Sbjct: 83 I---GMVFQNPDNQFVGA-TVEDDVAFGME---NQGIPREEMIKRVDEALLAVNMLDFKT 135
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
R +SGG+K+R+++A I RP+++ LDE TS LD +++++ I
Sbjct: 136 REPAR-----LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY 190
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT-FFA------EAGFPCPTRR 249
+ + SI E A D + ++ GE + ++AP+ FA E G P
Sbjct: 191 QLTVLSITHDLDEA-ASSDRILVMKAGEII----KEAAPSELFATSEDMVEIGLDVPFSS 245
Query: 250 N 250
N
Sbjct: 246 N 246
|
Length = 277 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 19/158 (12%)
Query: 36 ILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLG 93
+ A++GPSG GKST L A+ L + TG ++ +G+ YG +G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI---YGKFTDEVLLRKKIG 123
Query: 94 TL---------TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWH 143
+ ++ + IAY RL + +++ +++E+++ + L D +DRL N
Sbjct: 124 MVFQKPNPFPKSIFDNIAYGP--RLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNA- 180
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
G+SGG+++RL +A + P++L LDEPTS LD A
Sbjct: 181 -LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217
|
Length = 286 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 50/187 (26%), Positives = 94/187 (50%), Gaps = 24/187 (12%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVV---MTGNVLLNG---KKRRLDYGGVAYV 85
E +I A++GPSGSGKST L +L R++ + +TG +L G ++ ++ Y
Sbjct: 44 EKNKITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRGIDINRKEIN----VYE 98
Query: 86 TQENI-MLG------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADR 137
+++I M+ ++ E I ++ L + + + +++E ++ + L D D
Sbjct: 99 MRKHIGMVFQRPNPFAKSIYENITFA--LERAGVKDKKVLDEIVETSLKQAALWDQVKDD 156
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
L + +SGG+++RL IA I +P +L +DEP S LD + + + + + +
Sbjct: 157 L--HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-Y 213
Query: 198 TIISSIH 204
TII H
Sbjct: 214 TIIIVTH 220
|
Length = 267 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 43/219 (19%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVL--LNGKKRRLDYGGVAYVTQENIML 92
L ++G SGSGKSTL AL + G + G + L+ K+ R + V Q+
Sbjct: 316 LGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--Y 373
Query: 93 GTL----TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR--- 145
G+L TV + I + P ++ E + EA+ E+GL D A R R
Sbjct: 374 GSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGL-DPATR------NRYPH 425
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-----------IAH 194
SGG+++R++IA ++ +P+L+ LDEPTS LD + V+ +L++ I+H
Sbjct: 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
D V AL + ++ G+ V G ++
Sbjct: 486 DLAV-----------VRALCHRVIVMRDGKIVEQGPTEA 513
|
Length = 534 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 2e-10
Identities = 48/184 (26%), Positives = 95/184 (51%), Gaps = 26/184 (14%)
Query: 36 ILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK------------KRRLDYGG 81
I A++GPSG GKST L L L + + GNV+ GK +R++ G
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKI---G 91
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIG 140
+ + T ++ ++ + I+Y ++ + +++ +++E+++ + L + D+L
Sbjct: 92 MVFQTPNPFLM---SIYDNISYGP--KIHGTKDKKKLDEIVEQSLKKSALWNEVKDKL-- 144
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
N + +SGG+++RL IA + P ++ +DEPTS LD + + +++ N+ + TII
Sbjct: 145 NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTII 203
Query: 201 SSIH 204
H
Sbjct: 204 IVTH 207
|
Length = 254 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 20/193 (10%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDAL-------AG--RLSGNVVMTGNVLLNGK 73
+L G++ ++A++G SGSGKSTL++ L +G R++G V T + +
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
RR +G ++ Q +L LT + + A + + + ++ +E + +GLED
Sbjct: 83 LRREHFG---FIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRLLRAQELLQRLGLED 136
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
+ + +SGG+++R+SIA ++ Q++ DEPT LDS + V+ IL +
Sbjct: 137 RVE-----YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR 191
Query: 194 HDGRTIISSIHQP 206
G T+I H P
Sbjct: 192 DRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 33/200 (16%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDAL-------AGRLSGNVVMTG 66
+F +R+ + ++ A+P + +A++GP+G+GKSTL++ L +GR+ +
Sbjct: 341 SFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR 400
Query: 67 NVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI------AYSAHLRLPSNMNNEEITD 120
V +R + A V Q+ L ++ + I A +R + + D
Sbjct: 401 TVTRASLRRNI-----AVVFQDA-GLFNRSIEDNIRVGRPDATDEEMRAAAER--AQAHD 452
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
IE D D ++G RG +SGGE++RL+IA +L P +L LDE TS LD
Sbjct: 453 FIERK------PDGYDTVVGE---RGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503
Query: 179 SAAAFFVVKILKNIAHDGRT 198
V L + GRT
Sbjct: 504 VETEAKVKAALDELMK-GRT 522
|
Length = 588 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 15/212 (7%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTL---LDALAGRLSGNVVMTGNVL--LNGKKRRL 77
+L ++ E + ++G SG GKSTL L L G V G L L+ K+RR
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAH--LRLPSNMNNEEITDVIEEAITEMGLE-DC 134
V V Q++ + R T+ LR ++++ E I E + +GL +
Sbjct: 86 FRRDVQLVFQDSP--SAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED 143
Query: 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
AD+L R +SGG+ +R++IA + +P+L+ LDE S LD ++++L+ +
Sbjct: 144 ADKLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
T I V + + ++ G+ V
Sbjct: 199 AFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 53/243 (21%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-----SGNVVMTGNVLLNGKK- 74
R +L L+ EP R+ A++G +G+GKSTLL ALAG L +TG+V LNG+
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 75 RRLD---------------YGGVAYVTQENIMLGTLT-VRETIAYSAHLRLPSNMNNEEI 118
+D A+ +E ++LG R A +
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG---------- 123
Query: 119 TDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTR----------PQLL 168
++ +A+ G R + +SGGE R+ A +L + P+ L
Sbjct: 124 -EIAWQALALAGATALVGRDVTT-----LSGGELARVQFA-RVLAQLWPPHDAAQPPRYL 176
Query: 169 FLDEPTSGLDSAAAFFVVKILKNIAHDGRT-IISSIHQPS-SEVFALFDDLFLLSGGETV 226
LDEPT+ LD A ++ ++ +A D +++ +H P+ + A D + +L+ G V
Sbjct: 177 LLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA--DRIAMLADGAIV 234
Query: 227 YFG 229
G
Sbjct: 235 AHG 237
|
Length = 272 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS---GNVVMTGNVL-- 69
G + +LN ++ + +A++G SG GKSTL L G S GNV G L
Sbjct: 19 SGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78
Query: 70 LNGKKRRLDYGGVAYVTQENIMLGTL----TVRETIAYSAHLRLPSNMNNEEITDVIEEA 125
LN +R+ + V Q++I + TVRE I LR +++ E E
Sbjct: 79 LNRAQRKAFRRDIQMVFQDSI--SAVNPRKTVREIIREP--LRHLLSLDKAERLARASEM 134
Query: 126 ITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+ + L+D D+ +SGG+ +R+ +A + P+LL LDE S LD
Sbjct: 135 LRAVDLDDSVLDKRPPQ-----LSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 36 ILAVMGPSGSGKSTLLDALAGR---LSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML 92
I+ ++G +G+GK+TLL L G SG +V G + + + ++ VA V + +
Sbjct: 33 IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVF 92
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG--ISGG 150
+TV E +A ++ + I+ + + RL R +SGG
Sbjct: 93 SRMTVEENLAMGGFF-----AERDQFQERIKW------VYELFPRLHERRIQRAGTMSGG 141
Query: 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEV 210
E++ L+I ++++P+LL LDEP+ GL + ++ + G TI + Q +++
Sbjct: 142 EQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIF-LVEQNANQA 200
Query: 211 FALFDDLFLLSGGETV 226
L D ++L G V
Sbjct: 201 LKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 26/160 (16%)
Query: 38 AVMGPSGSGKSTLLDALAGRLSGNVV---MTGNVLLNGK---KRRLDYGGVAYVTQENIM 91
A +GPSG GKST L L R++ + +TG + L+G+ RLD V +
Sbjct: 49 AFIGPSGCGKSTFLRCL-NRMNDTIDGCRVTGKITLDGEDIYDPRLD------VVELRAR 101
Query: 92 LGTL---------TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGN 141
+G + ++ E +AY + + + E+ +++E ++ + GL E+ DRL +
Sbjct: 102 VGMVFQKPNPFPKSIYENVAYGPRIHGLAR-SKAELDEIVETSLRKAGLWEEVKDRL--H 158
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
G+SGG+++RL IA I P+++ +DEP S LD A
Sbjct: 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198
|
Length = 267 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 5e-10
Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 18/180 (10%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMT----GNVLLNGKKRRLDYGGVAYVTQENIM 91
+ A++GPSG GKST + L R++ +++ G++ L+G V + ++ M
Sbjct: 31 VTALIGPSGCGKSTFIRTL-NRMN-DLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGM 88
Query: 92 LGTL------TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHW 144
+ ++ + +AY LR+ + + I + +EE++ L D D+L +
Sbjct: 89 VFQKPNPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDKL--DKSA 144
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
G+SGG+++RL IA I P+++ +DEP S LD + + ++ + D TI+ H
Sbjct: 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKED-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD------YGGVAYVTQEN 89
IL V G G+G++ L+ AL G G GNV +NGK + G+A V ++
Sbjct: 288 ILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR 345
Query: 90 IMLG---TLTVRETIAYSAHLRLP--SNMNNEEITDVIEEAITEMGLEDCADRL-IGNWH 143
G L V + I S ++ +I AI + ++ + L IG
Sbjct: 346 KRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG--- 402
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGG +++ +A +LT P++L LDEPT G+D A + + K++ +A +G II +
Sbjct: 403 --RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII-VV 459
Query: 204 HQPSSEVFALFDDLFLLSGGE 224
+EV L D + ++ G+
Sbjct: 460 SSELAEVLGLSDRVLVIGEGK 480
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 7e-10
Identities = 77/306 (25%), Positives = 134/306 (43%), Gaps = 39/306 (12%)
Query: 32 EPARILAVMGPSGSGKST---LLDALAGRLSGNVVMTG---NVLLNGKKRRLDYGGVAYV 85
E I +MG SGSGKST LL+ L G V++ G + + + R + +A V
Sbjct: 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMV 111
Query: 86 TQENIMLGTLTVRETIAYSAHLR-LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
Q ++ +TV + A+ L + + E+ D A+ ++GLE+ A + +
Sbjct: 112 FQSFALMPHMTVLDNTAFGMELAGINAEERREKALD----ALRQVGLENYA-----HSYP 162
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV-KILKNIAHDGRTIISSI 203
+SGG ++R+ +A + P +L +DE S LD + +++K A RTI+
Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDF 263
H E + D + ++ GE V + G P NP++ ++R
Sbjct: 223 HD-LDEAMRIGDRIAIMQNGEVV-------------QVGTPDEILNNPANDYVRTFFRGV 268
Query: 264 DVVTEVLMESQRICETQNPLGPIRNL----PTSEIKGILIKKYRCSEYATRARSRIQGIS 319
D +++V S + + P G IR P S +K +L + R Y ++ G
Sbjct: 269 D-ISQVF--SAKDIARRTPNGLIRKTPGFGPRSALK-LLQDEDREYGYVIERGNKFVGAV 324
Query: 320 SIEGLE 325
SI+ L+
Sbjct: 325 SIDSLK 330
|
Length = 400 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 8e-10
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 27/167 (16%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY---- 79
L GL+ + +A++G +G GKSTLL L G +LLNG+ DY
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIA-DYSEAA 411
Query: 80 --GGVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
++ V+Q ++ TL R+ + +A N ++E + +V+++ +GLE +
Sbjct: 412 LRQAISVVSQRVHLFSATL--RDNLLLAAP-----NASDEALIEVLQQ----VGLEKLLE 460
Query: 137 RLIGNWHW-----RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
G W R +SGGE++RL IA +L LL LDEPT GLD
Sbjct: 461 DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507
|
Length = 574 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 9e-10
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 27/159 (16%)
Query: 35 RILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGK------------KRRLDYG 80
++ A++GPSG GKST+L +L L + G VL +G +RR+
Sbjct: 40 KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRI--- 96
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLI 139
G+ + Q N ++ E IA+ A + N ++ +++E ++ + + D C D+L
Sbjct: 97 GMVF-QQPNPF--PKSIYENIAFGARI----NGYTGDMDELVERSLRKAAVWDECKDKL- 148
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
N +SGG+++RL IA I P+++ +DEP S LD
Sbjct: 149 -NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 9e-10
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 34/168 (20%)
Query: 33 PARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKK------RRLDYGGVAY 84
I++++GP+G+GK+T+ + L G + +G G +LL G+ ++ GV
Sbjct: 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTG-----GTILLRGQHIEGLPGHQIARMGVVR 84
Query: 85 VTQENIMLGTLTVRETIAYSAHLRLPSNM-----------NNEEITDVIEEAIT---EMG 130
Q + +TV E + + H +L + + E + ++ A T +G
Sbjct: 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES--EALDRAATWLERVG 142
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
L + A+R GN ++ G+++RL IA ++T+P++L LDEP +GL+
Sbjct: 143 LLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 9e-10
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 18/166 (10%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVL--LNGKKR 75
++LN ++ +++A++GPSGSGK+TLL +AG + SG++ G + L+ + R
Sbjct: 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR 74
Query: 76 RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP--SNMNNEEITDVIEEAITEMGLED 133
+ V +V Q + +TV + IA+ + LP N I + + + + L
Sbjct: 75 K-----VGFVFQHYALFRHMTVFDNIAFGLTV-LPRRERPNAAAIKAKVTQLLEMVQLAH 128
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
ADR +SGG+K+R+++A + PQ+L LDEP LD+
Sbjct: 129 LADRYPAQ-----LSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLG 93
++G SGSGKSTL L G SG +++ G L + + L + Y+ QE +
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR-QFINYLPQEPYIF- 560
Query: 94 TLTVRETIAYSAHLRLPSNMNNE-----EITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
+ ++ E + A + + EI D IE +G + + IS
Sbjct: 561 SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIEN--MPLGYQTELSEEGSS-----IS 613
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
GG+K+R+++A +LT ++L LDE TS LD+ +V L N+ +TII H+ S
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLS- 670
Query: 209 EVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGF 243
V D + +L G+ + G GF
Sbjct: 671 -VAKQSDKIIVLDHGKIIEQGSHD---ELLDRNGF 701
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 1e-09
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 35 RILAVMGPSGSGKSTLLDAL--------AGRLSGNVVMTG-NV------LLNGKKRRLDY 79
+I A++GPSG GKSTLL AL RL G V++ N+ ++N +KR
Sbjct: 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKR---- 86
Query: 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
V V Q+ ++ + +A+ R+ + +V+E+++ + L D +
Sbjct: 87 --VGMVFQQPNPFPK-SIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQAAL---WDEVK 138
Query: 140 GNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
N H G +SGG+++RL IA + P+++ +DEP S LD + + ++++ + +
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN-Y 197
Query: 198 TIISSIHQPSSEVFALFDDLFLLSGGETVY--FGEAKSAP 235
TI H A FLL+G Y GE S P
Sbjct: 198 TIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237
|
Length = 251 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 25/189 (13%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT-GNVLLNGKKRRL 77
+ L++G++ + R+LA++G SGSGKS A G L V T G VLL+GK +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK--PV 71
Query: 78 DYGGVAYVTQENIM---------LGTLT--VRETIAYSAHLRLPSNMNNEEITDVIEEAI 126
+ IM L T+ RET A + + + A+
Sbjct: 72 APCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL--ALGKPADD-------ATLTAAL 122
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
+GLE+ A R++ + + +SGG +R+ IAL +L + DEPT+ LD A ++
Sbjct: 123 EAVGLEN-AARVLKLYPFE-MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180
Query: 187 KILKNIAHD 195
+L++I
Sbjct: 181 DLLESIVQK 189
|
Length = 254 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 25/163 (15%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKR--R 76
R +LN L + + +AV+G SG GKSTLL LAG S ++ G L + R
Sbjct: 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84
Query: 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
L + Q+ +L V + + L L D +A+ +GL D A
Sbjct: 85 LMF-------QDARLLPWKKVIDNVG----LGLKGQWR-----DAALQALAAVGLADRA- 127
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
W +SGG+K+R+++A ++ RP LL LDEP LD+
Sbjct: 128 ---NEWP-AALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166
|
Length = 257 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 48/158 (30%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA 83
L L+ + +A++G SGSGKSTLL L G L G + L+G
Sbjct: 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGV---------- 64
Query: 84 YVTQENIMLGTLTVRETIAY---SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG 140
+ + I+ +L + NN +G
Sbjct: 65 -----PVSDLEKALSSLISVLNQRPYLFDTTLRNN-----------------------LG 96
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
R SGGE++RL++A +L ++ LDEPT GLD
Sbjct: 97 ----RRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 20/208 (9%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGG---VAYVTQE 88
+I A+MGPSG GK+TLL + G++ G ++ G + + RL Y ++ + Q
Sbjct: 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL-YTVRKRMSMLFQS 92
Query: 89 NIMLGTLTVRETIAY--SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146
+ + V + +AY H +LP + + M LE R
Sbjct: 93 GALFTDMNVFDNVAYPLREHTQLP---------APLLHSTVMMKLEAVGLRGAAKLMPSE 143
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQ 205
+SGG +R ++A I P L+ DEP G D +VK++ + G T + H
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Query: 206 PSSEVFALFDDLFLLSGGETVYFGEAKS 233
EV ++ D ++++ + V G A++
Sbjct: 204 -VPEVLSIADHAYIVADKKIVAHGSAQA 230
|
Length = 269 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 14/195 (7%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-----LSGNVVMTGNVLLNGKK 74
+L GL I A+MGP+GSGKSTL +AG L G+++ G +L+ +
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRE--TIAYSA---HLRLPSNMNNEEITDVIEEAITEM 129
+ G+ Q I + ++ + +AY++ LP ++ E ++I E + +
Sbjct: 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLP-ELDPLEFLEIINEKLKLV 137
Query: 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
G++ L N + G SGGEKKR I L +L LDE SGLD A + + +
Sbjct: 138 GMD--PSFLSRNVN-EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194
Query: 190 KNIAHDGRTIISSIH 204
+ +II H
Sbjct: 195 NKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 37/229 (16%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKST----LLDALAGRLSGNVVMTGNVLLN-GKKRRLD 78
+ ++ P L ++G SGSGKST LL + + G + G L N +++ L
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ--GEIWFDGQPLHNLNRRQLLP 359
Query: 79 Y-GGVAYVTQE-NIMLGT-LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
+ V Q+ N L L V + I + P+ ++ + + + E+GL D
Sbjct: 360 VRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT-LSAAQREQQVIAVMEEVGL-DPE 417
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN---- 191
R + + SGG+++R++IA ++ +P L+ LDEPTS LD ++ +LK+
Sbjct: 418 TR---HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474
Query: 192 -------IAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233
I+HD + + HQ + +L GE V G+ +
Sbjct: 475 HQLAYLFISHDLHVVRALCHQ-----------VIVLRQGEVVEQGDCER 512
|
Length = 529 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 35/198 (17%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNG-- 72
G T RL G T L V+G SG GKST A+ G + G V G LL
Sbjct: 39 GVTLRLYEGET--------LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKD 90
Query: 73 KKRRLDYGGVAYVTQENIMLGTL----TVRETIAYSAHLRLPSNMNNEEITDVIEEAITE 128
+ R + + Q+ L +L T+ E IA P ++ +E+ D ++ + +
Sbjct: 91 DEWRAVRSDIQMIFQDP--LASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLK 147
Query: 129 MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
+GL LI N + SGG+ +R+ IA ++ P+L+ DEP S LD + VV +
Sbjct: 148 VGL---LPNLI-NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL 203
Query: 189 LKN-----------IAHD 195
L+ IAHD
Sbjct: 204 LQQLQREMGLSLIFIAHD 221
|
Length = 331 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 6e-09
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLD---ALAGRLSGNVVMTGNVLLNGKKR--- 75
+L+GL +A++GPSGSGKST+L L G + + G L + R
Sbjct: 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGP 73
Query: 76 ---------RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI 126
R + V Q + TV + + + L L M E E +
Sbjct: 74 LVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELL 131
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
+GL D AD + +SGG+++R++IA + RP+++ DE TS LD V+
Sbjct: 132 DMVGLADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186
Query: 187 KILKNIAHD 195
+++ +A +
Sbjct: 187 NVIRRLASE 195
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 37/214 (17%)
Query: 38 AVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQEN 89
A +G +GSGKST++ L G G+V + ++ + K + G+ + E+
Sbjct: 37 AFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96
Query: 90 IMLGTLTVRETIAYSAHLRLPSN--MNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRG 146
L TV + +A+ P N ++ EE + E + +G+ E ++ +
Sbjct: 97 -QLFEETVLKDVAFG-----PQNFGVSQEEAEALAREKLALVGISESLFEK-----NPFE 145
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206
+SGG+ +R++IA + P++L LDEPT+GLD ++ + K + G TI+ H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH-- 203
Query: 207 SSEVFALFDDL-------FLLSGGETVYFGEAKS 233
L DD+ ++L G+ V G+ K
Sbjct: 204 ------LMDDVANYADFVYVLEKGKLVLSGKPKD 231
|
Length = 280 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT--GNVLLNGKK- 74
G T + G++ E LA++G SGSGKS ++ G L G++L +G+
Sbjct: 20 GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79
Query: 75 --------RRLDYGGVAYVTQENIM-LGTL-TVRETIAYSAHLRLPSNMNNEEITDVIEE 124
R + + + QE + L L T+ + +A LRL ++ E
Sbjct: 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAARARALE 137
Query: 125 AITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+ +G+ + RL H +SGG+++R+ IA+ + P LL DEPT+ LD
Sbjct: 138 LLELVGIPEPEKRLDAYPH--ELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 67/200 (33%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT------GN 67
FG + ++G++ + L ++G SG GKSTL G +++ G
Sbjct: 19 GFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTL---------GRLILGLEEPTSGE 69
Query: 68 VLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAIT 127
+L GK +I + ++ EE + + E +
Sbjct: 70 ILFEGK---------------DI--------------------TKLSKEERRERVLELLE 94
Query: 128 EMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
++GL E+ R +SGG+++R+ IA + P+L+ DEP S LD + ++
Sbjct: 95 KVGLPEEFLYRYPHE-----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL 149
Query: 187 KILKN-----------IAHD 195
+LK+ I+HD
Sbjct: 150 NLLKDLQEELGLTYLFISHD 169
|
Length = 268 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 18/155 (11%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM 91
+ LA++G +GSGKSTL LAG + +G +L++ L +G +Y +Q M
Sbjct: 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDD--HPLHFGDYSYRSQRIRM 91
Query: 92 L-----GTLTVRETIA--YSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWH 143
+ +L R+ I+ LRL +++ E+ I E + ++GL D A +++
Sbjct: 92 IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----SYY 146
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
++ G+K+RL +A ++ RP+++ DE + LD
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 9e-09
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 22/205 (10%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKK----RRLDYGGVAYVTQEN 89
+ ++G +GSGKSTL L G L G V+++G + K R+L G+ + E
Sbjct: 31 IGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL--VGIVFQNPET 88
Query: 90 IMLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
+G TV E +A+ +L LP EI ++ A+ E+GLE R + +S
Sbjct: 89 QFVGR-TVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYRHR-----SPKTLS 138
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
GG+ + +++A + P+ L DE TS LD + V++ +K + G+TI+ H +
Sbjct: 139 GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH--NL 196
Query: 209 EVFALFDDLFLLSGGETVYFGEAKS 233
E D + ++ G+ V GE ++
Sbjct: 197 EELHDADRIIVMDRGKIVLEGEPEN 221
|
Length = 274 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 36/207 (17%)
Query: 40 MGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRRLDYGGVAYVTQENIMLGTLT 96
+GPSG GK+T+L +AG G + ++G+ R + + V Q + ++
Sbjct: 38 LGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMS 94
Query: 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156
+ E + Y L++ + EE ++EA+ + L DR + ISGG+++R++
Sbjct: 95 LGENVGYG--LKM-LGVPKEERKQRVKEALELVDLAGFEDRYVDQ-----ISGGQQQRVA 146
Query: 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ----------- 205
+A ++ +P++L DEP S LD+ N+ R I + Q
Sbjct: 147 LARALILKPKVLLFDEPLSNLDA-----------NLRRSMREKIRELQQQFNITSLYVTH 195
Query: 206 PSSEVFALFDDLFLLSGGETVYFGEAK 232
SE FA+ D + +++ G+ + G +
Sbjct: 196 DQSEAFAVSDTVIVMNKGKIMQIGSPQ 222
|
Length = 351 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLL-------DALAG-RLSGNVVMTG-NVL-- 69
+R +N ++ E + A++GPSG GKST L D + R G ++ G N+L
Sbjct: 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93
Query: 70 -LNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE 128
+N R + G V + N ++ T A L+ + +++EE++T+
Sbjct: 94 NINVVNLRREIGMV--FQKPNPFPKSIYNNITHA----LKYAGERRKSVLDEIVEESLTK 147
Query: 129 MGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
L D DRL + +SGG+++RL IA + +P +L LDEP S LD + + +
Sbjct: 148 AALWDEVKDRL--HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE 205
Query: 188 ILKNIAHDGRTII 200
++ + + II
Sbjct: 206 LITELKEEYSIII 218
|
Length = 268 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 22/152 (14%)
Query: 38 AVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKK----RRLDYG-GVAYVTQEN 89
A++G +GSGKSTLL L G L SG V + V+ GKK + L G+ + E+
Sbjct: 37 AIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96
Query: 90 IMLGTLTVRETIAYSAHLRLPSN--MNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRG 146
L TV + I + P N ++ E+ E I +GL E+ R
Sbjct: 97 -QLFEETVEKDICFG-----PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFE----- 145
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+SGG+ +R++IA + P++L LDEPT+GLD
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
|
Length = 290 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DYGGVAYVT 86
G ++ ++GP+G GK+T + LAG + + ++ ++ K + + DY G
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDG----- 416
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146
TV + + + S+ EI + LED +R +
Sbjct: 417 ---------TVEDLLRSAIRSAFGSSYFKTEIVK-------PLNLEDLLERPV-----DE 455
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
+SGGE +R++IA + L LDEP++ LD V K+++
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFI 502
|
Length = 591 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 49/172 (28%), Positives = 74/172 (43%), Gaps = 37/172 (21%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLG 93
A+I V+G +G+GKSTLL +AG V NG+ R V Y+ QE +
Sbjct: 32 AKI-GVLGLNGAGKSTLLRIMAG------VDKE---FNGEARPAPGIKVGYLPQEPQLDP 81
Query: 94 TLTVRETIA------YSAHLRLPS-NMNNEEITDVIEEAITEMG---------------- 130
T TVRE + A R + E ++ + E
Sbjct: 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141
Query: 131 -LEDCADRL---IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
LE D L + +SGGE++R+++ +L++P +L LDEPT+ LD
Sbjct: 142 KLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95
++ ++GP+G GK+T + LAG L + G++ + V+Y Q
Sbjct: 27 VIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELDT-------VSYKPQYIKADYEG 76
Query: 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155
TVR+ ++ EI + +E DR + +SGGE +R+
Sbjct: 77 TVRDLLSSITKDFYTHPYFKTEI-------AKPLQIEQILDREVPE-----LSGGELQRV 124
Query: 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
+IA + + LDEP++ LD K+++ A
Sbjct: 125 AIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 25/179 (13%)
Query: 38 AVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK----------RRLDYGGVAYVTQ 87
A++GP+G GKSTLL L+ RL G+V L+G+ RR + + Q
Sbjct: 37 AIIGPNGCGKSTLLRTLS-RLMTPA--HGHVWLDGEHIQHYASKEVARR-----IGLLAQ 88
Query: 88 ENIMLGTLTVRETIAYSAHLRLPSNMN-NEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146
G +TV+E +A + P +E + + +A+ G+ AD+ +
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT----- 143
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIH 204
+SGG+++R IA+ + ++ LDEPT+ LD + ++++L + + G T+ + +H
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 39/213 (18%)
Query: 37 LAVMGPSGSGKSTL---LDALAGRLSGNVVMTG------NVLLNGKKRRLDYGGVAYVTQ 87
L ++G +GSGKST+ ++AL G V + G L + + + G+ +
Sbjct: 39 LVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNK----AGMVFQNP 94
Query: 88 ENIMLGTLTVRETIAYSAHLRLPSNMN--NEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
+N ++ T+ V E +A+ P N+ EEI + ++E++ ++G+ + +R
Sbjct: 95 DNQIVATI-VEEDVAFG-----PENLGIPPEEIRERVDESLKKVGM----------YEYR 138
Query: 146 G-----ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTI 199
+SGG+K+R++IA + RP+ + DEPT+ LD + VV +K + G TI
Sbjct: 139 RHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITI 198
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
I H V A D + ++ G+ V G K
Sbjct: 199 ILITHYMEEAVEA--DRIIVMDSGKVVMEGTPK 229
|
Length = 280 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 37/186 (19%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY------GGVAYVT--- 86
IL + G G+G++ L+ L G G G + ++GK ++ G+A V
Sbjct: 290 ILGIAGLVGAGRTELVQCLFGAYPG--RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR 347
Query: 87 -----------QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
+NI L L ++ R+ ++ I E+I + ++ +
Sbjct: 348 KRDGIVPVMGVGKNITLAALD-----RFTGGSRI----DDAAELKTILESIQRLKVKTAS 398
Query: 136 DRL-IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
L I +SGG +++ +A +L P++L LDEPT G+D A + + K++ +
Sbjct: 399 PELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ 453
Query: 195 DGRTII 200
G II
Sbjct: 454 QGVAII 459
|
Length = 506 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 26/193 (13%)
Query: 41 GPSGSGKSTLLDALAGR---LSGNVVMTGNVLLNG---KKRRLDYGGVAYVTQENIMLGT 94
GPSG GKSTLL +AG SG++ G +N +R GV V Q +
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDL-FIGEKRMNDVPPAER-----GVGMVFQSYALYPH 89
Query: 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154
L+V E +++ L+L + EEI + + + L DR + +SGG+++R
Sbjct: 90 LSVAENMSFG--LKL-AGAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQR 141
Query: 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFV---VKILKNIAHDGRTIISSIHQPSSEVF 211
++I ++ P + LDEP S LD AA V ++I + GRT+I H E
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLD--AALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAM 198
Query: 212 ALFDDLFLLSGGE 224
L D + +L G
Sbjct: 199 TLADKIVVLDAGR 211
|
Length = 369 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 57/205 (27%), Positives = 83/205 (40%), Gaps = 41/205 (20%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS---GNVVMTGNVLLNGKKRR 76
R LL+ T P + + ++G +G GKSTLL L +S G+ GN L
Sbjct: 13 VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQL------ 66
Query: 77 LDYGGVAYVTQENIMLGTLTV-------RETIAYSAHLRLPSNMNNEEITDVIE---EAI 126
A+V QE L + RE A L + N+ I +AI
Sbjct: 67 ------AWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAI 120
Query: 127 TEMGLEDCADRLIGNWHW---------RGISGGEKKRLSIALEILTRPQLLFLDEPTSGL 177
+ A L+ + SGG + RL++A ++ R LL LDEPT+ L
Sbjct: 121 DAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHL 180
Query: 178 DSAAAFFVVKILKN-------IAHD 195
D A ++ K LK+ I+HD
Sbjct: 181 DLDAVIWLEKWLKSYQGTLILISHD 205
|
Length = 638 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 28/197 (14%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV-----------VMT- 65
GP L+ L ++L ++GP+G GKST L LAG+L N+ ++
Sbjct: 11 GPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDE 69
Query: 66 --GNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIE 123
G+ L N + L+ V + + L V+ + + ++ ++
Sbjct: 70 FRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVG--------ELLKKKDERGKLD 121
Query: 124 EAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
E + ++ L DR I +SGGE +R++IA + F DEP+S LD
Sbjct: 122 ELVDQLELRHVLDRNIDQ-----LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176
Query: 184 FVVKILKNIAHDGRTII 200
++++ +A D ++
Sbjct: 177 NAARLIRELAEDDNYVL 193
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNV------------------ 62
L+ ++ +A++G +GSGK+T ++ L L +G +
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 63 VMTGNVLLNGKKRRLDYG-------GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN 115
V+ V+ + +++ GV + E L T+ + I + + ++
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAE-YQLFEQTIEKDIIFGP---VSMGVSK 138
Query: 116 EEITDVIEEAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174
EE + I +GL E R +SGG+K+R+++A + P L DEPT
Sbjct: 139 EEAKKRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPT 193
Query: 175 SGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
+GLD +++I N+ G+TII H
Sbjct: 194 AGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 35/223 (15%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMT-GNVLLNGKK---------RRLDYGGVAYV 85
L ++GPSGSGK+T + + RL + T G + ++G+ RR + YV
Sbjct: 29 FLVLIGPSGSGKTTTM-KMINRL---IEPTSGEIFIDGEDIREQDPVELRR----KIGYV 80
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC--ADRLIGNWH 143
Q+ + +TV E IA L E+I + +E + +GL+ ADR +
Sbjct: 81 IQQIGLFPHMTVEENIALVPKL---LKWPKEKIRERADELLALVGLDPAEFADR-----Y 132
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISS 202
+SGG+++R+ +A + P LL +DEP LD + + K + + G+TI+
Sbjct: 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFV 192
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFGE-----AKSAPTFFAE 240
H E F L D + ++ GE V G A F AE
Sbjct: 193 THD-IDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 3e-08
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 20/191 (10%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLD- 78
R L +GL+ ++ + GP+G+GK++LL LAG + G VL G+ RR
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRD 70
Query: 79 --YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
+ + Y+ + + LT E + + L P + + + EA+ ++GL D
Sbjct: 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGD------DEALWEALAQVGLAGFED 124
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA-AFFVVKILKNIAHD 195
+ +S G+++R+++A LTR L LDEP + +D A + ++
Sbjct: 125 VPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQG 179
Query: 196 GRTIISSIHQP 206
G I+++ HQ
Sbjct: 180 GMVILTT-HQD 189
|
Length = 204 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 4e-08
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 32 EPARILAVMGPSGSGKSTLL-------DALAG-RLSGNVVMTGNVLLNGKK------RRL 77
I +GPSG GKST+L D + G R G+V G + GK RR
Sbjct: 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY-GKGVDPVVVRR- 89
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CAD 136
Y G+ + Q N ++++ + +A+ LRL N ++ D ++ A+ L D D
Sbjct: 90 -YIGMVF-QQPNPF--SMSIFDNVAFG--LRL--NRYKGDLGDRVKHALQGAALWDEVKD 141
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
+L + +SGG+++RL IA I T P++L LDEP S LD A V +++ + D
Sbjct: 142 KLKVSG--LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD 198
|
Length = 261 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 4e-08
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
Query: 89 NIMLGTLTVRETIAYSAHLRLPSN-MNNEEITDVIEEAITE---MGLEDCADRLIGNWHW 144
N M T E I +R + + E+ DV ++ + L D + L+G+ +
Sbjct: 523 NDMSNTTDSNELI----EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NA 577
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSI 203
+SGG+K+R+SIA I+ P++L LDE TS LD+ + + V K + N+ ++ R I
Sbjct: 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637
Query: 204 HQPSSEVFALFDDLFLLSGGE 224
H+ S+ +A + +F+LS E
Sbjct: 638 HRLSTIRYA--NTIFVLSNRE 656
|
Length = 1466 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205
G+SGG+K+R++IA + +P++L DEPT+GLD +++++ + + +T+ H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 206 PSSEVFALFDDLFLLSGGETVYFG 229
V + D++ ++ G+ + G
Sbjct: 236 -MEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 60/185 (32%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY 79
++LN ++ + GPSG GKSTLL +A +S +G +L G+ D
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGE----DI 71
Query: 80 GG---------VAYVTQENIMLGTLTVRETIAYSAHLR-----------------LPSNM 113
V+Y Q + G TV + + + +R LP +
Sbjct: 72 STLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTI 130
Query: 114 NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173
+ I + +SGGEK+R+S+ + P++L LDE
Sbjct: 131 LTKNIAE--------------------------LSGGEKQRISLIRNLQFMPKVLLLDEI 164
Query: 174 TSGLD 178
TS LD
Sbjct: 165 TSALD 169
|
Length = 225 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 5e-08
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 45/219 (20%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---KKRRLDY--GGVAYVT 86
+P ++L + GP+GSGKSTLL +L R V G++ + K +LD +A V+
Sbjct: 339 KPGQMLGICGPTGSGKSTLL-SLIQRHFD--VSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395
Query: 87 Q----------ENIMLGTLTV-RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
Q NI LG ++ I + A L ++++ ++I + + TE+G
Sbjct: 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARL---ASVH-DDILRLPQGYDTEVG----- 446
Query: 136 DRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
RG+ SGG+K+R+SIA +L ++L LD+ S +D +IL N+
Sbjct: 447 --------ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEH---QILHNLR 495
Query: 194 H--DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230
+GRT+I S H+ S+ A ++ ++ G G
Sbjct: 496 QWGEGRTVIISAHRLSALTEA--SEILVMQHGHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 39/189 (20%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGN------------VV--MTGNVLLNGKKRRL 77
P +++ ++GP+G GKST L LAG L N V+ G L N K+
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157
Query: 78 DYGGVAYVTQENIMLGTL------TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131
+ G + + + V E L +E + +GL
Sbjct: 158 E--GELRAVHKPQYVDLIPKVVKGKVGEL--------LKKVDER----GKFDEVVERLGL 203
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
E+ DR + +SGGE +R++IA +L + F DEP+S LD ++++
Sbjct: 204 ENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 192 IAHDGRTII 200
+A DG+ +I
Sbjct: 259 LAEDGKYVI 267
|
Length = 591 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 47/210 (22%), Positives = 100/210 (47%), Gaps = 11/210 (5%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-----GRLSGNVVMTGNVLLNGKKRR 76
+ L+ ++ I+++ G +G+GKSTL+ L+ G G ++ G L R
Sbjct: 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78
Query: 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
+ G+A + QE ++ L+V E I + M+ + + ++ + ++ L+
Sbjct: 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA 138
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
+GN + G+++ + IA + + +LL LDEPT+ L + ++ I++++ G
Sbjct: 139 TPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG 193
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETV 226
I H+ +EV A+ D + ++ G +
Sbjct: 194 IACIYISHK-LNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 18/157 (11%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM 91
+ LA++G +GSGKSTL LAG + +G +L+N L +G ++ ++ M
Sbjct: 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILIND--HPLHFGDYSFRSKRIRM 91
Query: 92 L-----GTLTVRETIA--YSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWH 143
+ +L R I LRL +++ E+ I E + +GL D A N++
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA-----NYY 146
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
++ G+K+R+++A ++ RP+++ DE + LD +
Sbjct: 147 PHMLAPGQKQRVALARALILRPKIIIADEALASLDMS 183
|
Length = 267 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 8e-08
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 36/190 (18%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY------GGVAYV 85
+ +A++G SGSGKST+ + L R + G +LL+G R DY VA V
Sbjct: 367 PAGKTVALVGRSGSGKSTIAN-LLTRFYD--IDEGEILLDGHDLR-DYTLASLRNQVALV 422
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-----ITEMGLEDCADRLIG 140
+Q N+ L T+ IAY+ + + E+I + A I +M ++ D +IG
Sbjct: 423 SQ-NVHLFNDTIANNIAYARTEQY----SREQIEEAARMAYAMDFINKM--DNGLDTVIG 475
Query: 141 NWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL----KN--- 191
G+ SGG+++R++IA +L +L LDE TS LD+ + + L KN
Sbjct: 476 E---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 192 --IAHDGRTI 199
IAH TI
Sbjct: 533 LVIAHRLSTI 542
|
Length = 582 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 25/213 (11%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDYG-----GVAYVT 86
P I A++G +G+GKSTL+ L+G G + +N +LD+ G+ +
Sbjct: 30 PGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIY 86
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSN-------MNNEEITDVIEEAITEMGLEDCADRLI 139
QE ++ LTV E + R + ++ E+ + +GL+ D +
Sbjct: 87 QELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV 143
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
N +S K+ L IA ++ +++ +DEPTS L + ++ I+ + +G I
Sbjct: 144 AN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAI 198
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ H+ +E+ + D ++ G +V G
Sbjct: 199 VYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS 230
|
Length = 510 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK----KRRLDY--GGVAYVTQ-- 87
IL G GSG++ L++ L G + G + LNGK + LD G+AY+T+
Sbjct: 291 ILGFAGLVGSGRTELMNCLFG---VDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESR 347
Query: 88 -ENIMLGTLTVRETIAYSAHLRLPS-----NMNNEEITDVIEEAITEMGLEDCA--DRLI 139
+N ++ + +A S L+ + +E E E+ C ++ I
Sbjct: 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
+SGG ++++ I+ + P+++ DEPT G+D A + K+++ +A DG+ I
Sbjct: 408 TE-----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVI 462
Query: 200 I 200
+
Sbjct: 463 L 463
|
Length = 510 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 8e-08
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL-------DALAG-RLSGNVVMTGNVLLN 71
T+ +L+ L + ++ A +GPSG GKST L D + G G + G +
Sbjct: 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153
Query: 72 GKKRRLDYGG-VAYVTQENIMLGTLTVRETIAYSAHLRLPSN--MNNEEITD-VIEEAIT 127
K L+ + V Q+ +++ + +AY P N +N+ +I + ++E+++
Sbjct: 154 KKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYG-----PRNNGINDRKILEKIVEKSLK 207
Query: 128 EMGL-EDCADRL--IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
L ++ D L GN +SGG+++RL IA I P++L +DEPTS LD A
Sbjct: 208 SAALWDEVKDDLDKAGN----ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
|
Length = 329 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 33/216 (15%)
Query: 35 RILAVMGPSGSGKSTLL-------DALAG-RLSGNVVMTGNVLLNGK------KRRLDYG 80
+I A +GPSG GKST+L D + G R+ G V G L +RR
Sbjct: 37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRR---- 92
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLI 139
+ V Q+ ++ + IAY A + N ++ +++E ++ + L D D+L
Sbjct: 93 -IGMVFQKPNPFPK-SIYDNIAYGARI----NGYKGDMDELVERSLRQAALWDEVKDKL- 145
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
+SGG+++RL IA I +P+++ +DEP S LD + + +++ + TI
Sbjct: 146 -KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTI 203
Query: 200 ISSIH---QPS--SEVFALFDDLFLLSGGETVYFGE 230
I H Q + S++ A F+ GG Y E
Sbjct: 204 IIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239
|
Length = 264 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 29/204 (14%)
Query: 37 LAVMGPSGSGKSTLL---DALAGRLSGNVVM--------TGNVLLNGKKRRLDYGGVAYV 85
+A++G +GSGKSTL+ +AL SG + + TGN L ++++ + +
Sbjct: 36 VALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKV---SLVFQ 92
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGL-EDCADRLIGNW 142
E L TV + + + P N + +E + + + ++GL ED +
Sbjct: 93 FPEA-QLFENTVLKDVEFG-----PKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFE- 145
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202
+SGG+ +R++IA + P++L LDEP +GLD ++++ K+ G T+I
Sbjct: 146 ----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILV 201
Query: 203 IHQPSSEVFALFDDLFLLSGGETV 226
H +V DD+ +L G+ +
Sbjct: 202 THN-MDDVAEYADDVLVLEHGKLI 224
|
Length = 287 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 22/182 (12%)
Query: 36 ILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGK----------KRRLDYGGVA 83
+ A++GPSG GKST + L L +V TG +L + + R + G V
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMV- 110
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNW 142
+ N ++ + + Y ++ + + + +++E+++ + D DRL N
Sbjct: 111 -FQKPNPF--PKSIYDNVTYGP--KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA 165
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202
+ G+SGG+++RL IA + P ++ +DEPTS LD + V ++++ + D +II
Sbjct: 166 Y--GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD-YSIIIV 222
Query: 203 IH 204
H
Sbjct: 223 TH 224
|
Length = 271 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 37/211 (17%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK- 73
F G L+ + ++ ++G G GKS+LL A+ G + + G V + K
Sbjct: 8 FSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKN 64
Query: 74 --------KRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA 125
R + VAY Q+ +L TV E I + S N + V +
Sbjct: 65 ESEPSFEATRSRNRYSVAYAAQKPWLLNA-TVEENITFG------SPFNKQRYKAVTDAC 117
Query: 126 ITEMGLEDCADRL-------IGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSG 176
L+ D L IG RGI SGG+++R+ +A + ++FLD+P S
Sbjct: 118 ----SLQPDIDLLPFGDQTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSA 170
Query: 177 LDSAAAFFVVK--ILKNIAHDGRTIISSIHQ 205
LD + +++ ILK + D RT++ H+
Sbjct: 171 LDIHLSDHLMQEGILKFLQDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 51/147 (34%), Positives = 74/147 (50%), Gaps = 21/147 (14%)
Query: 39 VM-GPSGSGKSTLLDALAGRL----SGNVVMTGNVL--LNGKKRRLDYGGVAYVTQENIM 91
V+ GPSG GKSTLL +AG L SG + + G V+ L R +A V Q +
Sbjct: 34 VLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVVNELEPADR-----DIAMVFQNYAL 87
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151
++VRE +AY +R M EI + + EA + LE DR R +SGG+
Sbjct: 88 YPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQ 139
Query: 152 KKRLSIALEILTRPQLLFLDEPTSGLD 178
++R+++ I+ P + DEP S LD
Sbjct: 140 RQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---------KKRRLDYGGV 82
E + A++G +GSGKSTL+ + L TG V ++ K R +
Sbjct: 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRI 87
Query: 83 AYVTQ-ENIMLGTLTVRETIAYSAHLRLPSN--MNNEEITDVIEEAITEMGLEDCADRLI 139
V Q L TV I + P N MN +E+ + + ++G R +
Sbjct: 88 GMVFQFPESQLFEDTVEREIIFG-----PKNFKMNLDEVKNYAHRLLMDLGFS----RDV 138
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRT 198
+ +SGG+ ++++I + P ++ LDEPT+GLD + V+++LK++ + +T
Sbjct: 139 MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKT 198
Query: 199 IISSIH 204
II H
Sbjct: 199 IILVSH 204
|
Length = 286 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 41 GPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE- 99
GPSGSGKSTLL +L N L + + + + G E + L T RE
Sbjct: 44 GPSGSGKSTLLRSL----------YANYLPDEGQILVRHEG------EWVDLVTAEPREV 87
Query: 100 ------TIAY-SAHLRLPSNMNNEEITDVIEEAITEMGL--EDC---ADRLIGN------ 141
TI Y S LR+ ++ DV+ E + G+ E A L+
Sbjct: 88 LEVRRTTIGYVSQFLRVIPRVSA---LDVVAEPLLARGVPREVARAKAADLLTRLNLPER 144
Query: 142 -WHW--RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
W SGGE++R++IA + +L LDEPT+ LD+ VV++++ G
Sbjct: 145 LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAA 204
Query: 199 IISSIH 204
++ H
Sbjct: 205 LVGIFH 210
|
Length = 235 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 49/196 (25%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 38 AVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL-DYGGVAYVTQENIMLG 93
+++G +GSGKST+ + G SG + + + +L + G+ + +N +G
Sbjct: 39 SIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98
Query: 94 TLTVRETIAYSAHLRLPSNM-NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152
+ + Y L ++ +E+ + EA+ ++ + + AD + +SGG+K
Sbjct: 99 S-----IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQK 148
Query: 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR-TIISSIHQPSSEVF 211
+R++IA + P ++ LDE TS LD A ++ +++ + + TIIS H S +
Sbjct: 149 QRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME 208
Query: 212 ALFDDLFLLSGGETVY 227
A D + +++ G TVY
Sbjct: 209 A--DHVIVMNKG-TVY 221
|
Length = 269 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 19/158 (12%)
Query: 36 ILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQE---- 88
IL V G G+G++ L+ L G R SG V + G+ ++ + G+ Y++++
Sbjct: 280 ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRD 339
Query: 89 NIMLGTLTVRETIAYSAHLRLPSN----MNNEEITDVIEEAITEMGLED-CADRLIGNWH 143
++LG ++V+E ++ +A LR S + + + + + I ++ ++ IG
Sbjct: 340 GLVLG-MSVKENMSLTA-LRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL-- 395
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+SGG +++++IA ++TRP++L LDEPT G+D A
Sbjct: 396 ---LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
|
Length = 501 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 32/167 (19%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYG 80
LNG+T ++AV+G G GKS+LL AL ++ G+V M G+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS------------- 700
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--DCADRL 138
VAYV Q+ + ++RE I + L N + V+E LE DR
Sbjct: 701 -VAYVPQQ-AWIQNDSLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 139 -IGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
IG +G+ SGG+K+R+S+A + + + D+P S +D+
Sbjct: 753 EIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 7e-07
Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 25/210 (11%)
Query: 35 RILAVMGPSGSGKSTLL---DALAGRLSGNVVMTGNVLL-----NGKKRRLD----YGGV 82
++ A++GPSG GKST L + + GN G ++L N +D +
Sbjct: 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE-GEIILHPDNVNILSPEVDPIEVRMRI 101
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGN 141
+ V Q+ ++ E +AY LR+ + + +E A+ L ++ DRL G+
Sbjct: 102 SMVFQKPNPFPK-SIFENVAYG--LRIRGVKRRSILEERVENALRNAALWDEVKDRL-GD 157
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIIS 201
+ +SGG+++RL IA + T P++L DEPTS LD A + +++ ++ + TI+
Sbjct: 158 LAF-NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILI 215
Query: 202 SIH--QPSSEVFALFDDLFLLSGGETVYFG 229
H Q ++ V +++ GE + FG
Sbjct: 216 VTHNMQQAARVSDYTAYMYM---GELIEFG 242
|
Length = 265 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 8e-07
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 29 GYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL--DYGGVA 83
G ++ ++GP+G GK+T LAG L G V + ++ K + + DY G
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQYIKPDYDG-- 415
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
TV + + S L S+ EI I + LE D+ + +
Sbjct: 416 ------------TVEDLLR-SITDDLGSSYYKSEI-------IKPLQLERLLDKNVKD-- 453
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193
+SGGE +R++IA + L LDEP++ LD V K ++ IA
Sbjct: 454 ---LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
|
Length = 590 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 9e-07
Identities = 48/180 (26%), Positives = 69/180 (38%), Gaps = 53/180 (29%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGR---LSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI 90
A+I V+G +G+GKSTLL +AG G G K V Y+ QE
Sbjct: 34 AKI-GVLGLNGAGKSTLLRIMAGVDKEFEGEAR-----PAPGIK-------VGYLPQEPQ 80
Query: 91 MLGTLTVRETI------AYSAHLRLPS-NMNNEEITDVIEEAITEMG------------- 130
+ TVRE + +A R E + E G
Sbjct: 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140
Query: 131 ----LEDCADRL--------IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
LE D L + +SGGE++R+++ +L +P +L LDEPT+ LD
Sbjct: 141 LDSQLEIAMDALRCPPWDAKVTK-----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-07
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 41/204 (20%)
Query: 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-------LDYGGVA 83
++ A+MG +G+GKSTLL L+G G++L++G++ R L GVA
Sbjct: 27 CRAGQVHALMGENGAGKSTLLKILSGN---YQPDAGSILIDGQEMRFASTTAALA-AGVA 82
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNM---NNEEITDVIEEAITEMGLE-DCADRLI 139
+ QE ++ +TV E + +LP N + E + +G++ D L
Sbjct: 83 IIYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL- 138
Query: 140 GNWHWRGISGGEKKRLSIA----LEI---LTR-PQLLFLDEPTSGLDSAAAFFVVKILKN 191
K LSI +EI L R +++ DEPTS L + + ++++
Sbjct: 139 -------------KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185
Query: 192 IAHDGRTIISSIHQPSSEVFALFD 215
+ +GR I+ H+ E+FAL D
Sbjct: 186 LRAEGRVILYVSHR-MEEIFALCD 208
|
Length = 501 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDAL-------AGRLSGNVVMTG 66
F + + + ++ A+ + +A++GP+G+GK+TL++ L G++ + +
Sbjct: 341 TFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN 400
Query: 67 NVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121
V ++ + D G +ENI LG + Y A D
Sbjct: 401 TVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEA-------AKAAAAHDF 453
Query: 122 IEEAITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
I + D L+G RG +SGGE++RL+IA IL +L LDE TS LD
Sbjct: 454 ILKRSNGY------DTLVGE---RGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 32/206 (15%)
Query: 36 ILAVMGPSGSGKSTLLDALAG---RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML 92
IL + G G+ ++ +++ L G + +G + + G + N G A VT+E
Sbjct: 276 ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEER--- 332
Query: 93 GTLTVRETIAYS----AHLRLPSNM----------NNEEITDVIEEAITEMGLEDCADR- 137
R T Y+ L SN+ +N + + I M ++ R
Sbjct: 333 -----RSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT 387
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
IG+ +SGG ++++ I +LT+P++L LDEPT G+D A F + +++ +A +
Sbjct: 388 QIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK 442
Query: 198 TIISSIHQPSSEVFALFDDLFLLSGG 223
II I E+ + D + ++S G
Sbjct: 443 GII-IISSEMPELLGITDRILVMSNG 467
|
Length = 491 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206
+S GE++ + IA + +LL LDEPT+ L A + K+++ + G +I H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 207 SSEVFALFDDLFLLSGGETV 226
EVF + D + +L G V
Sbjct: 143 -DEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 35/198 (17%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG--------KK 74
+L ++ P + + ++G +GSGKSTLL A L+ G++ ++G +K
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQK 74
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRETI-AYSAHLRLPSNMNNEEITDVIEEAITEMGLED 133
R +G V + + + + T R+ + Y ++EEI V EE +GL+
Sbjct: 75 WRKAFG----VIPQKVFIFSGTFRKNLDPYGKW-------SDEEIWKVAEE----VGLKS 119
Query: 134 CADRLIGNWHWRGISGG------EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK 187
++ G + + GG K+ + +A +L++ ++L LDEP++ LD + K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 188 ILKNIAHDGRTIISSIHQ 205
LK A T+I S H+
Sbjct: 180 TLKQ-AFADCTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 31/171 (18%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--------SGNVVMTG-NVLLNG-- 72
L+G++ E + LAV+G SG GKSTL RL G + G ++L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTL-----ARLLTMIETPTGGELYYQGQDLLKADPE 85
Query: 73 --KKRRLDYGGVAYVTQENIMLGTLTVRETIAY--SAHLRLPSNMNNEEITDVIEEAITE 128
K R + V Q G+L R+ + L + ++++ E + + +
Sbjct: 86 AQKLLRQK---IQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAK 140
Query: 129 MGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+GL + DR H SGG+++R++IA ++ P ++ DEP S LD
Sbjct: 141 VGLRPEHYDRYP---HM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 43/171 (25%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL 77
+ L++ L+ P I+ V+GP+G+GKSTL + G+ SG + + V L
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKL------- 387
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
AYV Q R+ + P+ EEI+ ++ I ++G + R
Sbjct: 388 -----AYVDQS---------RDALD-------PNKTVWEEISGGLD--IIQLGKREVPSR 424
Query: 138 -LIGNWHWRG---------ISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+G ++++G +SGGE+ R+ +A + + +L LDEPT+ LD
Sbjct: 425 AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 24/160 (15%)
Query: 33 PAR-ILAVMGPSGSGKSTLLDA------------LAGRLSGNVVMTGNVLLNGKKRRLDY 79
PA+ I+A +GPSG GKSTLL + GRL + +N K R
Sbjct: 44 PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQV 103
Query: 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRL 138
G V + N ++ E IA++ +N + +++E+++ + E+ D+L
Sbjct: 104 GMV--FQRPNPF--PKSIYENIAFAPR----ANGYKGNLDELVEDSLRRAAIWEEVKDKL 155
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+SGG+++RL IA I +P +L +DEP S LD
Sbjct: 156 --KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
SGGEK RL++A +L P LL LDEPT+ LD
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 56/210 (26%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---------- 73
L ++ +P + ++G +GSGKS+LL AL RL + +G++L++G
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVE--LSSGSILIDGVDISKIGLHDL 76
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIA-YSAHLRLPSNMNNEEITDVIEEAITEMGLE 132
+ R+ + + Q+ ++ + T+R + + + ++EE+ +E GL+
Sbjct: 77 RSRI-----SIIPQDPVLF-SGTIRSNLDPFGEY-------SDEELWQALERV----GLK 119
Query: 133 DCADRLIG-----------NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181
+ + L G N S G+++ L +A +L + ++L LDE T+ +D
Sbjct: 120 EFVESLPGGLDTVVEEGGENL-----SVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 182 AFFVVKILKN---------IAHDGRTIISS 202
+ K ++ IAH TII S
Sbjct: 175 DALIQKTIREAFKDCTVLTIAHRLDTIIDS 204
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSI 203
R +SGGEK+R+ +A ++ P L DEPT LD A V L+ G +++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 204 HQPSSEVFA-LFDDLFLLSGGETVYFGEAKSAPTFFAE 240
H P EV L D L GE G F E
Sbjct: 227 HWP--EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME 262
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 85 VTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW-- 142
V+QE ML +++ E I + + E++ + A + +E ++ N
Sbjct: 1301 VSQEP-MLFNMSIYENIKFGKE-----DATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIIS 201
+ + +SGG+K+R++IA +L P++L LDE TS LDS + + K + +I +TII+
Sbjct: 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
Query: 202 SIHQPSS 208
H+ +S
Sbjct: 1415 IAHRIAS 1421
|
Length = 1466 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 49/159 (30%), Positives = 66/159 (41%), Gaps = 46/159 (28%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN 89
P + ++G +G+GKSTL+ LAG L SG + + + L Y Q
Sbjct: 337 PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL------------GYFAQHQ 384
Query: 90 IMLGTLTVRETIAYSAHL-RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG-- 146
L L E+ HL RL E L D +G + ++G
Sbjct: 385 --LEFLRADESPL--QHLARLA-------------PQELEQKLRD----YLGGFGFQGDK 423
Query: 147 -------ISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
SGGEK RL +AL + RP LL LDEPT+ LD
Sbjct: 424 VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 58/225 (25%)
Query: 22 RLLNGLTGYAEPARILAVMGPSGSGKSTL-------LDALAGRLSGNVVMTGNVLLNGKK 74
+L ++ + + ++G +G+GKSTL L+A G++ + + + L +
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 75 RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM-NNEEITDVIEEAITEMGLED 133
L + Q+ + T+R + P + ++EEI + ++E GL
Sbjct: 82 SSL-----TIIPQDPTLFSG-TIRSNLD-------PFDEYSDEEIYGALR--VSEGGLN- 125
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-- 191
+S G+++ L +A +L RP++L LDE T+ +D A + K ++
Sbjct: 126 -------------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF 172
Query: 192 -------IAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
IAH RTII +D + ++ GE +
Sbjct: 173 TNSTILTIAHRLRTIID------------YDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 28/165 (16%)
Query: 32 EPARILAVMGPSGSGKST-------LLDALAGRLSGNVVMTGNVLLNGK---------KR 75
+ ++ ++G SGSGKS L+D GR VM + NG+ +R
Sbjct: 31 KQGEVVGIVGESGSGKSVSSLAIMGLID-YPGR-----VMAEKLEFNGQDLQRISEKERR 84
Query: 76 RLDYGGVAYVTQENIMLGTLTVRETIAYS--AHLRLPSNMNNEEITDVIEEAITEMGLED 133
L VA + Q+ + +L T+ + +++ N + + + ++G+ D
Sbjct: 85 NLVGAEVAMIFQDPMT--SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD 142
Query: 134 CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
A RL H +SGG +R+ IA+ I RP+LL DEPT+ LD
Sbjct: 143 PASRLDVYPH--QLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
|
Length = 326 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 35/189 (18%)
Query: 37 LAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKR--------------RLDY 79
LA++G SGSGKS AL RL +G +V +LL + R +
Sbjct: 45 LAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRG 103
Query: 80 GGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
+A + QE + + TV E IA S +RL + EE + + ++ + +
Sbjct: 104 ADMAMIFQEPMTSLNPVFTVGEQIAES--IRLHQGASREEAMVEAKRMLDQVRIPEAQTI 161
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD---SAAAFFVVKILKN--- 191
L H +SGG ++R+ IA+ + RP +L DEPT+ LD A ++K+L+
Sbjct: 162 LSRYPH--QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS 219
Query: 192 -----IAHD 195
I HD
Sbjct: 220 MGVIFITHD 228
|
Length = 623 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 148 SGGEKKRLSIAL-----EIL---TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
SGGE+ S+AL ++L R +LLFLDEP LD + +IL+ + DGR I
Sbjct: 817 SGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQI 876
Query: 200 I 200
I
Sbjct: 877 I 877
|
Length = 908 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 7e-06
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 24/191 (12%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG-------- 72
R +L L+ E + + ++G +GSGKSTLL AL LS G + ++G
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE----GEIQIDGVSWNSVTL 1287
Query: 73 KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE 132
+ R +G V + + + + T R+ +L ++EEI V EE + +E
Sbjct: 1288 QTWRKAFG----VIPQKVFIFSGTFRK------NLDPYEQWSDEEIWKVAEEVGLKSVIE 1337
Query: 133 DCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
D+L G +S G K+ + +A IL++ ++L LDEP++ LD + K LK
Sbjct: 1338 QFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLK 1397
Query: 191 NIAHDGRTIIS 201
+ I+S
Sbjct: 1398 QSFSNCTVILS 1408
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-06
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 19/149 (12%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95
++A++G +G GK++L+ A+ G LS T +V++ G VAYV Q + +
Sbjct: 645 LVAIVGGTGEGKTSLISAMLGELSH--AETSSVVIRGS--------VAYVPQVSWIFNA- 693
Query: 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG--ISGGEKK 153
TVRE I + S+ +E I+ + L+ R + RG ISGG+K+
Sbjct: 694 TVRENILFG------SDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQ 747
Query: 154 RLSIALEILTRPQLLFLDEPTSGLDSAAA 182
R+S+A + + + D+P S LD+ A
Sbjct: 748 RVSMARAVYSNSDIYIFDDPLSALDAHVA 776
|
Length = 1495 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 29/206 (14%)
Query: 33 PAR-ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDYG----GVAYVT 86
P+R +A++G +GSGKSTL L G + G + L+G+ L + GVA V
Sbjct: 365 PSRGFVALVGHTGSGKSTLASLLMGYY---PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR- 145
Q+ ++L + A++ L +++ E++ +E + L + A L +
Sbjct: 422 QDPVVLAD-------TFLANVTLGRDISEEQVWQALET----VQLAELARSLPDGLYTPL 470
Query: 146 -----GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+S G+K+ L++A ++ PQ+L LDE T+ +DS + + L + + T++
Sbjct: 471 GEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAV-REHTTLV 529
Query: 201 SSIHQPSSEVFALFDDLFLLSGGETV 226
H+ S+ V A D + +L G+ V
Sbjct: 530 VIAHRLSTIVEA--DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 54/203 (26%), Positives = 106/203 (52%), Gaps = 24/203 (11%)
Query: 33 PARILAVMGPSGSGKSTLLDALAG---RLSGNVVMTG-NVLLNGKKRRLDYGGVAYVTQE 88
P R++A++G +G+GKST++ L G R +G+++ G V NG K + G+ + QE
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE-AGIGIIHQE 87
Query: 89 NIMLGTLTVRETIAYSAHLRLPSN----MNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
++ LT+ E I R N ++ +++ ++ + + L +D+L+G
Sbjct: 88 LNLIPQLTIAENIFLG---REFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE--- 141
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGL---DSAAAFFVVKILKNIAHDGRTIIS 201
+S GE++ + IA + +++ +DEPT L ++ + F V++ LK+ GR I+
Sbjct: 142 --LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS---QGRGIVY 196
Query: 202 SIHQPSSEVFALFDDLFLLSGGE 224
H+ E+F + DD+ + G+
Sbjct: 197 ISHR-LKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 34/202 (16%)
Query: 39 VMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-IMLGTLTV 97
V+G +GSGKSTLL +L + + G V +R +AYV Q+ IM TV
Sbjct: 691 VLGATGSGKSTLLQSLLSQFE---ISEGRVW---AER-----SIAYVPQQAWIM--NATV 737
Query: 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL---IGNWHWRGI--SGGEK 152
R I + + + D + + E L L IG +G+ SGG+K
Sbjct: 738 RGNILFF------DEEDAARLADAVRVSQLEADLAQLGGGLETEIGE---KGVNLSGGQK 788
Query: 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK--ILKNIAHDGRTIISSIHQPSSEV 210
R+S+A + + LD+P S LD+ VV+ L +A G+T + + HQ V
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA--GKTRVLATHQ--VHV 844
Query: 211 FALFDDLFLLSGGETVYFGEAK 232
D + L G + G +
Sbjct: 845 VPRADYVVALGDGRVEFSGSSA 866
|
Length = 1560 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-05
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 22/188 (11%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDY 79
LL ++ + +L + G +G+GK+TLL +AG L G ++ + KK Y
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ---SIKKDLCTY 72
Query: 80 GG-VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
+ +V + + LT+RE Y H S I E LE D
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLYDIHF---SPGAVG-----ITELCRLFSLEHLIDYP 124
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV-KILKNIAHDGR 197
G +S G+K+++++ +++ +L LDEP LD + ++ KI ++ A G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 198 TIISSIHQ 205
+++S HQ
Sbjct: 180 VLLTS-HQ 186
|
Length = 200 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 37/159 (23%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN 89
+ A++G +G+GKSTL+ +AG + SG + + GN + G+ V QE
Sbjct: 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEP 95
Query: 90 IMLGTLTVRETIAYSAHLRLPSNMNNEE-ITDVIEEAITEMGLE------DCADRLIGNW 142
++ L+V+E I + LP + + + ++ ++ L+ + ADR I
Sbjct: 96 LLFPNLSVKENILF----GLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQI--- 148
Query: 143 HWRGISGGEKKRLSIALEI---LTR-PQLLFLDEPTSGL 177
+EI L R ++L LDEPT+ L
Sbjct: 149 ----------------VEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI--ISS 202
R +SGG ++++ IA + PQLL +DEPT G+D +A + +++++IA + ISS
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISS 461
|
Length = 510 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 27/154 (17%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM 91
++A++G +G GK++L+ A+ G L +V++ G VAYV Q + +
Sbjct: 641 PVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVIRGT--------VAYVPQVSWI 690
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW----RG- 146
TVR+ I + + + E AI L+ D L G RG
Sbjct: 691 FNA-TVRDNILFGSPFD----------PERYERAIDVTALQHDLDLLPGGDLTEIGERGV 739
Query: 147 -ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
ISGG+K+R+S+A + + + D+P S LD+
Sbjct: 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773
|
Length = 1622 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207
SGG ++R+ IA+ +L RP+LL DEPT+ LD ++ +L + + T I I
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222
Query: 208 SEVFALFDDLFLLSGGETVYFGEAK 232
V + D + ++ G T+ +G A+
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGNAR 247
|
Length = 330 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 30/209 (14%)
Query: 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT 65
E + +V PN L+ L+ L + GP+G GKS+L L
Sbjct: 455 ENIPLVTPN-----GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWP------ 503
Query: 66 GNVLLNGKKRRLDYGGVAYVTQENIM-LGTLTVRETIAYSAHLRLPSNMNNEEITD-VIE 123
+ G+ + G + YV Q M LGTL R+ I Y +M ++D +E
Sbjct: 504 ---VYGGRLTKPAKGKLFYVPQRPYMTLGTL--RDQIIYPDS---SEDMKRRGLSDKDLE 555
Query: 124 EAITEMGLEDCADRLIG-----NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+ + + L +R G +W +SGGEK+R+++A +PQ LDE TS +
Sbjct: 556 QILDNVQLTHILEREGGWSAVQDWM-DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVS 614
Query: 179 SAAAFFVVKILKNIAHDGRTIISSIHQPS 207
++ ++ + G T+ S H+ S
Sbjct: 615 VDVEGYMYRLCREF---GITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 33/185 (17%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM 91
+P ++AV+G SG+GK+TLL + G G +K R D G V
Sbjct: 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKG---------RGEEKYRPDSGKVEVPKNTVSA 457
Query: 92 L---------GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
L G +T+ E + ++N E + GL D
Sbjct: 458 LIPGEYEPEFGEVTILEHLR-----SKTGDLN------AAVEILNRAGLSDAVLYRRK-- 504
Query: 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIIS 201
+ +S G+K+R +A + RP +L +DE + LD A V + + +A + G T+I
Sbjct: 505 -FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 202 SIHQP 206
H+P
Sbjct: 564 VTHRP 568
|
Length = 593 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-05
Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 58/198 (29%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV----------------------- 68
+ ++ ++GP+G GK+T + L+G L N+ G+
Sbjct: 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQNYFK 153
Query: 69 -LLNGKKRRLDYGGVAYVTQE-----NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
L NG+ + V + Q + G VRE + +E +
Sbjct: 154 KLYNGEIK------VVHKPQYVDLIPKVFKGK--VRELL-----------KKVDE-RGKL 193
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
+E + +GLE+ DR I +SGGE +R++IA +L F DEPTS LD
Sbjct: 194 DEVVERLGLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248
Query: 183 FFVVKILKNIAHDGRTII 200
V ++++ +A +G+ ++
Sbjct: 249 LNVARLIRELA-EGKYVL 265
|
Length = 590 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRL---SGNV-VMTGNVLLNGKKRRLDYGGVA-----Y 84
I ++G SG+GK+TL +AG L SG V V G+ ++ K D G A
Sbjct: 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369
Query: 85 VTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
+ QE + TV + + + L LP + + ++ G ++ I + +
Sbjct: 370 LHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMV----GFDEEKAEEILDKYP 425
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+S GE+ R+++A ++ P+++ LDEPT +D
Sbjct: 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 26/194 (13%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG----KKRRLD 78
+L+GL+ + P+ + V+G +G+GKS++L+AL + + G ++++ K D
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTD 1307
Query: 79 YGGVAYVTQENIMLGTLTVRETI-AYSAH--LRLPSNMNNEEITDVIEEAITEMGLEDCA 135
V + ++ +L + TVR I +S H L + I DVI+ GL+ A
Sbjct: 1308 LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDR--NPFGLD--A 1363
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN---- 191
+ G S G+++ LS+A +L R ++L LDE T+ +D + + ++
Sbjct: 1364 EVSEGG---ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420
Query: 192 -----IAHDGRTII 200
IAH TII
Sbjct: 1421 CTMLVIAHRLNTII 1434
|
Length = 1495 |
| >gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGN 61
R++AV+GPSG+GK TLLDA RL+G
Sbjct: 4 MGRLIAVVGPSGAGKDTLLDAARARLAGR 32
|
Length = 192 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 45/202 (22%), Positives = 72/202 (35%), Gaps = 39/202 (19%)
Query: 19 PTRRLLNGLTGYAEP----------ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV 68
P + L + E + + GP+G+GKST+LDA+ L G G
Sbjct: 3 PLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQ 62
Query: 69 LLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIA-YSAHLRLPSNMNNEEITDVIEEAIT 127
A E+ + T + Y R ++ ++ T ++
Sbjct: 63 -------ENLRSVFA--PGEDTAEVSFTFQLGGKKYRVE-RSR-GLDYDQFTRIVLLPQG 111
Query: 128 EMGLEDCADRLIGNWHWRGISGGEKKRLSIAL-----EILT-----RPQLLFLDEPTSGL 177
E DR + +SGGE S++L E+L R + LF+DE L
Sbjct: 112 E------FDRFLAR-PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTL 164
Query: 178 DSAAAFFVVKILKNIAHDGRTI 199
D A V L+ I + R +
Sbjct: 165 DPEALEAVATALELIRTENRMV 186
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 29/210 (13%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGT 94
++ V+G +GSGKST++ G + + TG ++ + + V + +G
Sbjct: 38 KVTCVIGTTGSGKSTMIQLTNGLI---ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGL 94
Query: 95 L-----------TVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGL-EDCADRLIG 140
+ T+ + IA+ P N+ N +E + E + + L ED R
Sbjct: 95 VFQFPEYQLFQETIEKDIAFG-----PVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPF 149
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTI 199
+SGG+K+R+++A I L LDEPT GLD + + + + + + I
Sbjct: 150 E-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRI 204
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
I H +V + D++ ++ G+ + G
Sbjct: 205 IMVTHN-MDQVLRIADEVIVMHEGKVISIG 233
|
Length = 289 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-04
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
+ LL ++ P + ++G +G+GKSTLL +AG L G
Sbjct: 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL---------EPDEGIVTWGSTV 63
Query: 81 GVAYVTQ 87
+ Y Q
Sbjct: 64 KIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 144 WRGISGGEKKRLSIALEILT---RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+GIS G K+ L++ L +L+ + LL +DEP +GL +V++LK ++ G +I
Sbjct: 187 IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLI 246
Query: 201 SSIHQPS 207
+ H P
Sbjct: 247 FTTHSPL 253
|
Length = 256 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 147 ISGGEKKRLSIALEILT---RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+SGGE +RL +A E+L +P L LDEPT+GL + ++ +L+++ H G T++
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866
|
Length = 1809 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 18 GPTRRLLNGLTG--YAEPA-------RILAVMGPSGSGKSTLLDALAG--RLSGNVVMTG 66
G R L+GL G EP I+ + G G+G+S L+ L G R + G
Sbjct: 254 GEVRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA-----G 308
Query: 67 NVLLNGKKRRLDYGGVAYVTQENIML-----------GTLTVRETIAYSA---HLRLPSN 112
V L+GK + A + IML +V + I SA HLR
Sbjct: 309 QVYLDGKPIDIRSPRDA--IRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCL 366
Query: 113 MNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTR-----PQ 166
+NN + + I + ++ ++LI N +SGG +++ IL R +
Sbjct: 367 INNRWEAENADRFIRSLNIKTPSREQLIMN-----LSGGNQQKA-----ILGRWLSEDMK 416
Query: 167 LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
++ LDEPT G+D A + ++ +A G ++
Sbjct: 417 VILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450
|
Length = 501 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 25/159 (15%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMT--GNVLLNGKKRRLDYGGVAYVTQENI 90
P L+++G SGSGKST GR +V + G ++ NG++ G + +I
Sbjct: 349 PGETLSLVGESGSGKST-----TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI 403
Query: 91 ML------GTLTVRETIAYSAH--LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142
+L R+T+ S LR+ + + + + +GL
Sbjct: 404 QFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-------EH 456
Query: 143 HWR---GISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
WR SGG+++R+ IA + P+++ DE S LD
Sbjct: 457 AWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 6e-04
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVV--MTGNV-LLNGKKRRLDY 79
P I+AV+GP G+GKSTL+ +L R + + + G + +++GK RR+ +
Sbjct: 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITF 117
|
Length = 1077 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 7e-04
Identities = 36/172 (20%), Positives = 56/172 (32%), Gaps = 54/172 (31%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML 92
P ++ ++GP GSGK+TL ALA L GGV Y+ E+I+
Sbjct: 1 PGEVILIVGPPGSGKTTLARALAREL-----------------GPPGGGVIYIDGEDILE 43
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152
L I SG +
Sbjct: 44 EVLDQLLLIIVGGKK-------------------------------------ASGSGELR 66
Query: 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
RL++AL +P +L LDE TS LD+ ++ + + ++
Sbjct: 67 LRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 7e-04
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-IAHDGRTIISSIHQ 205
+SGGE +R++IA +L DEP++ LD + ++ +T + H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 206 PSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDF 263
A+ D LS V+ GE P + A P T R + FLR F
Sbjct: 132 -----LAVLD---YLSDRIHVFEGE----PGVYGIASQPKGT-REGINRFLRGYLITF 176
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 46/183 (25%)
Query: 38 AVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQE--------- 88
A +G +GSGKS L ALAG L LL+G+ R+ + + ++ E
Sbjct: 33 AFVGANGSGKSALARALAGEL---------PLLSGE-RQSQFSHITRLSFEQLQKLVSDE 82
Query: 89 -----NIMLGT------LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
ML T E I + + E+ + G+ DR
Sbjct: 83 WQRNNTDMLSPGEDDTGRTTAEII-----------QDEVKDPARCEQLAQQFGITALLDR 131
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
++ +S GE ++ + +++ P LL LDEP GLD A+ + ++L ++ G
Sbjct: 132 -----RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGI 186
Query: 198 TII 200
T++
Sbjct: 187 TLV 189
|
Length = 490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 34/215 (15%)
Query: 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82
+L ++ E ++LAV G +GSGKS+LL + G L + GK + G +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---------EGKIKH--SGRI 489
Query: 83 AYVTQEN-IMLGTLTVRETIAYSA---HLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
++ Q + IM G T+++ I + R S + + +EE I +D
Sbjct: 490 SFSPQTSWIMPG--TIKDNIIFGLSYDEYRYTSVIKACQ----LEEDIALFPEKDKTVLG 543
Query: 139 IGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAH 194
G GI SGG++ R+S+A + L LD P + LD + F + K +++
Sbjct: 544 EG-----GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
R +++S E D + LL G ++G
Sbjct: 599 KTRILVTS----KLEHLKKADKILLLHEGVCYFYG 629
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.001
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 8/117 (6%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL----LNGKKRRLDYGGVAYVTQENIM 91
I+ + GP GSGKSTL LA +L V+ ++L L + +
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEI 60
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
L L +E + + EE V+ ++ L C RL+ RG
Sbjct: 61 LDELAKQEWV-IDGVRESTLELRLEEADLVV---FLDLPLPACRFRLLKRRLQRGRG 113
|
Length = 114 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 38/208 (18%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN-I 90
E +LA+ G +GSGK++LL + G L + GK + G +++ +Q + I
Sbjct: 61 EKGEMLAITGSTGSGKTSLLMLILGELEPS---------EGKIKH--SGRISFSSQFSWI 109
Query: 91 MLGTLTVRETIAYSA---HLRLPSNMN----NEEITDVIEEAITEMGLEDCADRLIGNWH 143
M GT ++E I + R S + E+IT E+ T +G
Sbjct: 110 MPGT--IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT-------- 159
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD--SAAAFFVVKILKNIAHDGRTIIS 201
+SGG++ R+S+A + L LD P LD + F + K +A+ R +++
Sbjct: 160 ---LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVT 216
Query: 202 SIHQPSSEVFALFDDLFLLSGGETVYFG 229
S E D + +L G + ++G
Sbjct: 217 S----KMEHLKKADKILILHEGSSYFYG 240
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSG 60
R++ V+GPSG+GK TLLD RL+G
Sbjct: 2 RLIYVVGPSGAGKDTLLDYARARLAG 27
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PMID:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP [Central intermediary metabolism, Phosphorus compounds]. Length = 179 |
| >gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 41 GPSGSGKSTLLDALAGRLSGNVVMTGN 67
GPSGSGKSTL+DA+ ++
Sbjct: 28 GPSGSGKSTLIDAIQ------TLLVPA 48
|
Length = 60 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 54/207 (26%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLT 96
+A++GP+G GKST+L ++G L +G V + K R +A +Q ++ L+
Sbjct: 538 IAMVGPNGIGKSTILKLISGELQP---SSGTVFRSAKVR------MAVFSQHHVDGLDLS 588
Query: 97 VRETIAYSAHL-------RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149
+ Y +L +++ + +T + A+ M +SG
Sbjct: 589 SNPLL-YMMRCFPGVPEQKLRAHLGSFGVTGNL--ALQPM---------------YTLSG 630
Query: 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAA--------AFFVVKILKNIAHDGRTIIS 201
G+K R++ A +P +L LDEP++ LD A F +L ++HD I
Sbjct: 631 GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLM-VSHDEHLISG 689
Query: 202 SIHQPSSEVFALFDDLFLLSGGETVYF 228
S+ D+L+++S G+ F
Sbjct: 690 SV-----------DELWVVSEGKVTPF 705
|
Length = 718 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.003
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 57/178 (32%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL 77
R L++ L+ P I+ ++GP+G+GKSTL + G+ SG + + V L
Sbjct: 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKL------- 389
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT---DVIEEAITEM----- 129
AYV Q R+ + P+ EEI+ D+I+ E+
Sbjct: 390 -----AYVDQS---------RDALD-------PNKTVWEEISGGLDIIKVGNREIPSRAY 428
Query: 130 -------GLEDCAD--RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
G D + +G +SGGE+ RL +A + +L LDEPT+ LD
Sbjct: 429 VGRFNFKG----GDQQKKVGV-----LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 145 RGISGGEKKRLSIALEILTRP-QLLFLDEPTSGLD 178
+ +SGGE+ RL +A + +P LL LDEPT+ LD
Sbjct: 439 KALSGGERNRLLLA-RLFLKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQEN 89
P+ I + G +G GKS+LL +AG + SGN+ + N K Y G N
Sbjct: 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG------HN 78
Query: 90 IMLGT-LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
+ L +TV E +L+ S + N + + AI L D D + +S
Sbjct: 79 LGLKLEMTVFE------NLKFWSEIYNS--AETLYAAIHYFKLHDLLDEKCYS-----LS 125
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208
G +K ++IA I + L LDE + L + ++ A+ G ++ S H SS
Sbjct: 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185
|
Length = 195 |
| >gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV--MTGNV-LLNGKKRRL 77
T P ++ V+GP G GKSTL+ +L R + + + G + ++ GKKRRL
Sbjct: 33 TPEEPPPLVVVVVGPPGVGKSTLIRSLIKRYTKQNLSDIKGPITIVTGKKRRL 85
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. Length = 231 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRL 58
+ + G SG GKSTLL+AL L
Sbjct: 36 KTSVLAGQSGVGKSTLLNALLPEL 59
|
Length = 161 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 47/156 (30%)
Query: 41 GPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100
G +G+GK+T+++AL +TG + N K D ++ VR
Sbjct: 29 GQNGAGKTTIIEAL------KYALTGELPPNSKGGAHD----------PKLIREGEVR-- 70
Query: 101 IAYSAHLRLPSNMNNEEIT-----DVIEEAI----TEMG--LEDCADRLIGNWHWRGISG 149
L N N ++ T ++E I E L D R SG
Sbjct: 71 --AQVKLAF-ENANGKKYTITRSLAILENVIFCHQGESNWPLLDMRGRC---------SG 118
Query: 150 GEKK------RLSIALEILTRPQLLFLDEPTSGLDS 179
GEK RL++A + +L LDEPT+ LD
Sbjct: 119 GEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.003
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRL 58
+ ++G SG GKSTLL+AL L
Sbjct: 86 KTSVLVGQSGVGKSTLLNALLPEL 109
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|218925 pfam06177, QueT, QueT transporter | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 423 LNGHYGVAVYI---LSNFLSSL-----PFLTAMSFATTSITYYMVKF-RPGISHFIYAGL 473
N Y V V + ++N S L F T + +TY + K + + + A L
Sbjct: 41 FNKKYIVGVTLGCFIANLFSPLGIIDVVFGTLATLIALLLTYLIKKKVKKVWAKMLLAAL 100
Query: 474 DLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIM 510
T S+A I + + +P +LT + + G L M
Sbjct: 101 LFTVSMAFIIAIELNYLLKLPFWLTWLTVALGELVSM 137
|
This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate. Length = 152 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 25/205 (12%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-------KRRLDYGGVAYV 85
P I A+MG +G+GKSTLL L G + +G++L GK K L+ G++ V
Sbjct: 23 PHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALE-NGISMV 78
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSN---MNNEEITDVIEEAITEMGLE-DCADRLIGN 141
QE ++ +V + + R P+ ++ +++ + E+ ++ D ++
Sbjct: 79 HQELNLVLQRSVMDNMWLG---RYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-- 133
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIIS 201
+S + + + IA +++ +DEPTS L + I++ + G I+
Sbjct: 134 ----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189
Query: 202 SIHQPSSEVFALFDDLFLLSGGETV 226
H+ E+F L D++ +L G+ +
Sbjct: 190 ISHK-MEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGR 57
L + + +A++G SG GKSTL++AL G
Sbjct: 188 LAAWLSGGKTVALLGSSGVGKSTLVNALLGE 218
|
Length = 356 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 661 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.98 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.95 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.93 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.92 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.89 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.89 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.87 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.85 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.84 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.84 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.84 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.82 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.81 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.81 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.81 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.79 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.78 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.78 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.77 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.77 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.76 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.76 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.73 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.73 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.72 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.72 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.69 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.66 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.63 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.57 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.53 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.52 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.47 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.44 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.43 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.39 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.34 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.34 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.34 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.33 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.28 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.27 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.27 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.26 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.25 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.24 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.22 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.22 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.21 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.21 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.21 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.2 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.19 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.18 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.18 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.18 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.16 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.07 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.06 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.05 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.02 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.02 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.01 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.98 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.96 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 98.94 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.94 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.93 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.93 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.9 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.81 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.8 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.79 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.71 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.71 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.69 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.63 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.61 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.6 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.54 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.52 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.52 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.49 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.47 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.46 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.46 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.46 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.46 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.42 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.41 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.26 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.26 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.23 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.2 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.18 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.15 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.15 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.13 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.12 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.02 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.01 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.01 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.99 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.99 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.96 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.95 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 97.95 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 97.94 | |
| PRK13764 | 602 | ATPase; Provisional | 97.93 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 97.92 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.91 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.89 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 97.89 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-112 Score=970.51 Aligned_cols=578 Identities=40% Similarity=0.673 Sum_probs=510.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--ccc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDY 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~ 79 (661)
.++|+|++++.+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+..++...+|+|++||++.. ..+
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 5789999999876332 4688999999999999999999999999999999999999876678999999997643 346
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.+|||+|||.++|+|||+|++.|+|++|+|.+.++++++++|+++++++||++|+|+++|+...||+||||||||+||.
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~ 183 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIAL 183 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHH
Confidence 78999999999999999999999999999999889999999999999999999999999999988999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHH
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFA 239 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~ 239 (661)
+|++||+||||||||||||+.++.++++.|+++|++|+|||+|+|||+++++++||++++|++|+++|+|+++++.+||+
T Consensus 184 Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~ 263 (613)
T KOG0061|consen 184 ELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFS 263 (613)
T ss_pred HHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCchhHHHHhhccC--chhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHHHh-h
Q 045930 240 EAGFPCPTRRNPSDHFLRCINSD--FDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRI-Q 316 (661)
Q Consensus 240 ~~g~~~~~~~npad~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~-~ 316 (661)
+.|++||++.||+||++++++.+ .+...+.. ......+.++..+...+..... .
T Consensus 264 ~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 320 (613)
T KOG0061|consen 264 SLGFPCPELENPADFLLDLLSVDSGTRELEEAV-----------------------RIAKLINKFSQTDNLKKTLEALEK 320 (613)
T ss_pred hCCCCCCCcCChHHHHHHHHccCCCchhHHhHH-----------------------HHHHHhhhccccchhhhhHHHHhh
Confidence 99999999999999999999854 22111110 0111222222111111100000 0
Q ss_pred hcccccccccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q 045930 317 GISSIEGLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFI 396 (661)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~ 396 (661)
........ +....++||.|++.|++|.+++++|||.+++.|+++.+++|+++|++||+++++..++++|.++++|+
T Consensus 321 ~~~~~~~~----~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 321 SLSTSKKV----EIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFI 396 (613)
T ss_pred hccccccc----ccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHH
Confidence 01100000 11116899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHH
Q 045930 397 SGFMTFMSIG-GFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDL 475 (661)
Q Consensus 397 ~~~~~~~s~~-~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l 475 (661)
..++.|.++. +++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|++++..+|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 9999888775 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCcc
Q 045930 476 TSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEF 555 (661)
Q Consensus 476 ~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~ 555 (661)
++..++++++++++++++||..+|.++++++++.|++|+|||++.++||++ |+| ++|+||++|+|||++.|||.+...
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~-~~w-~~~~S~~ry~~e~l~~n~~~~~~~ 554 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKY-FRW-ISYLSYFRYAFEALLINQFSGGSS 554 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHH-HHH-HHHHhHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999985 788 999999999999999999997344
Q ss_pred ccCCC--CCCCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045930 556 DAIDR--DGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREKA 611 (661)
Q Consensus 556 ~~~~~--~~~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 611 (661)
.|... ..+..+|++++++ .+++. .+.|.|+.+++++.++||+++|++|+++.+.
T Consensus 555 ~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~ 610 (613)
T KOG0061|consen 555 RCFLSGNLCCESTGEDVLKQ-LGFED-SSFWLDLLVLLAFIVFFRVLGYLALRFRVKR 610 (613)
T ss_pred ccccCcCCcccccHHHHHHh-cCCcc-cccchhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44332 4577899999997 57764 3599999999999999999999999998764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-105 Score=923.00 Aligned_cols=565 Identities=32% Similarity=0.526 Sum_probs=502.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccCeEEEEecCCCCCCCCCH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV 97 (661)
++.+|+|+|++++|||++||+|||||||||||++|+|+.+++...+|+|.+||.+.. ..++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999998765446899999999753 235679999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc-ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH-WRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~-~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
+|||.|++.++.|...++++++++++++++.+||.+++|+.+|+.. .++|||||||||+||+||+.+|++++|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999888777788888899999999999999999999753 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHhcCCCCCCCCCchhHHH
Q 045930 177 LDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFL 256 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~~~~~npad~~~ 256 (661)
||+.++..+++.|++++++|+|||+++|||+++++++||++++|++|+++|.|+++++.+||+++|++||++.||+||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~ 276 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999999889999999999988899999999999999999999999999999999999999999999999
Q ss_pred HhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHHHhhhccccc-----ccccccCCC
Q 045930 257 RCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQGISSIE-----GLEFKRKNG 331 (661)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 331 (661)
++++.+.+.. ..+.+..+++.+.|++++.+++..+.+......+ .........
T Consensus 277 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (617)
T TIGR00955 277 QVLAVIPGSE----------------------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG 334 (617)
T ss_pred HHhhcCcccc----------------------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccc
Confidence 9886542210 0012334567788888777665554433211110 001111234
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hHHHH
Q 045930 332 SQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSI-GGFPS 410 (661)
Q Consensus 332 ~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~-~~~~~ 410 (661)
+..+|++|+.+|++|++++.+|||.++++|+++++++|+++|++||+++++++++++|.|++||+..++.|.++ ..++.
T Consensus 335 ~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~ 414 (617)
T TIGR00955 335 YNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINV 414 (617)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999888888764 66889
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 411 FIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIA 490 (661)
Q Consensus 411 ~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~ 490 (661)
|++||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..+++++++++++
T Consensus 415 f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~ 494 (617)
T TIGR00955 415 FTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLIS 494 (617)
T ss_pred HHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCcc-ccCC---CCCCCcC
Q 045930 491 SMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEF-DAID---RDGPKLK 566 (661)
Q Consensus 491 ~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~-~~~~---~~~~~~~ 566 (661)
+++||..+|..+++++++++++|+||+++.++||+| |+| ++|+||++||+|+++.|||.|..+ +|.. .+.|..+
T Consensus 495 ~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~-~~W-~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~ 572 (617)
T TIGR00955 495 CAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVY-FKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS 572 (617)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHH-HHH-HHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcC
Confidence 999999999999999999999999999999999985 999 999999999999999999999876 4532 1225578
Q ss_pred HHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 567 GDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 567 G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
|+++|+. +|++.++ .|.|+++|+++.++|++++|++|+++.+
T Consensus 573 g~~~l~~-~g~~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~ 614 (617)
T TIGR00955 573 GEVILET-LSFRNAD-LYLDLIGLVILIFFFRLLAYFALRIRIR 614 (617)
T ss_pred hHHHHHh-cCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999986 7887544 7999999999999999999999998755
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-105 Score=917.79 Aligned_cols=573 Identities=31% Similarity=0.494 Sum_probs=481.5
Q ss_pred eEEEEEEEEEeecCC-----------------------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 2 YLVWEEVTVVVPNFG-----------------------SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~-----------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|.|++|+++..+ .-.++.+|+|||+++++||++||+||||||||||||+|+|+.
T Consensus 39 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~ 118 (659)
T PLN03211 39 TLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI 118 (659)
T ss_pred EEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 688999999886321 002467999999999999999999999999999999999998
Q ss_pred CCCCceeeEEEECCeecc-cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 045930 59 SGNVVMTGNVLLNGKKRR-LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137 (661)
Q Consensus 59 ~~~~~~~G~i~~~g~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~ 137 (661)
+++ ..+|+|.+||++.. ..++.+|||+|++.+++.+||+||+.+++.++++...++++++++++++++.+||++++|+
T Consensus 119 ~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t 197 (659)
T PLN03211 119 QGN-NFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENT 197 (659)
T ss_pred CCC-ceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCc
Confidence 763 25899999998753 2345699999999999999999999999888766556667777889999999999999999
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
++|+...++||||||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++
T Consensus 198 ~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~i 277 (659)
T PLN03211 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSV 277 (659)
T ss_pred eeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceE
Confidence 99988889999999999999999999999999999999999999999999999999889999999999977799999999
Q ss_pred EEEeCCeEEEecCCCChhHHHHhcCCCCCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHH
Q 045930 218 FLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGI 297 (661)
Q Consensus 218 ~lL~~G~~v~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (661)
++|++|+++|.|+++++.+||+++|++||.+.|||||++++++.+.+.- . . . + . ...+..+.
T Consensus 278 ilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~------~-----~-~--~--~--~~~~~~~~ 339 (659)
T PLN03211 278 LVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD------G-----V-S--E--R--EKPNVKQS 339 (659)
T ss_pred EEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC------C-----c-c--c--c--ccchHHHH
Confidence 9999999999999999999999999999999999999999987643210 0 0 0 0 0 00112234
Q ss_pred HHHHhhcCHHHHHHHHHhhh--ccc-cc-------ccccc-cCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHH
Q 045930 298 LIKKYRCSEYATRARSRIQG--ISS-IE-------GLEFK-RKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYI 366 (661)
Q Consensus 298 l~~~~~~s~~~~~~~~~~~~--~~~-~~-------~~~~~-~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~ 366 (661)
+.+.|++... ++..+.++. ... .. ..... ......++||+|+.+|++|++++ +||+.+.++|+++++
T Consensus 340 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i 417 (659)
T PLN03211 340 LVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVI 417 (659)
T ss_pred HHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHH
Confidence 5556643211 111111110 000 00 00000 11124478999999999999998 899999999999999
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 045930 367 ILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFM-SIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLT 445 (661)
Q Consensus 367 ~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~-s~~~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~ 445 (661)
++|+++|++||+++ ..++++|.|++||++.++.+. ++..++.|++||+||+||+.+|+|++++|++|++++|+|+.+
T Consensus 418 ~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~ 495 (659)
T PLN03211 418 AAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMEL 495 (659)
T ss_pred HHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999985 678999999999998886654 457899999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcc
Q 045930 446 AMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPK 525 (661)
Q Consensus 446 ~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~ 525 (661)
+.+++|++|+|||+||++++++|++|++++++..++++++|+++++++||+.+|+.+++++++++++|+||+++ +||+
T Consensus 496 ~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~ 573 (659)
T PLN03211 496 ILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS 573 (659)
T ss_pred HHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 7998
Q ss_pred cccccccccccHHHHHHHHHHHhhhCCCc-----cccCCCC-----CCCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHH
Q 045930 526 VFWRYPIAYINYGAWALQGAYKNDLIGLE-----FDAIDRD-----GPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILI 595 (661)
Q Consensus 526 ~~w~w~i~yis~~~ya~e~l~~nef~g~~-----~~~~~~~-----~~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~ 595 (661)
| |+| ++|+||++||||+++.|||.+.. ++|..+. .|...++.++. +.+.|.|+++|+++++
T Consensus 574 ~-~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~-------~~~~~~~~~~l~~~~~ 644 (659)
T PLN03211 574 C-MAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG-------QISPATSVSVLIFMFV 644 (659)
T ss_pred H-HHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-------ccchHHHHHHHHHHHH
Confidence 5 999 99999999999999999997643 3453321 13334443332 2358999999999999
Q ss_pred HHHHHHHHHHHHH
Q 045930 596 SYRVIFFAILKFR 608 (661)
Q Consensus 596 ~~~~l~~~~L~~~ 608 (661)
+||+++|++|++.
T Consensus 645 ~~~~l~~~~L~~~ 657 (659)
T PLN03211 645 GYRLLAYLALRRI 657 (659)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-103 Score=969.25 Aligned_cols=571 Identities=24% Similarity=0.366 Sum_probs=501.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeeEEEECCeecc----cccCeEEEEecCCCCCCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRR----LDYGGVAYVTQENIMLGT 94 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~i~~~g~~~~----~~~~~i~yv~Q~~~l~~~ 94 (661)
+++||+|||+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||++.. ..++.++||+|+|.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 357999999999999999999999999999999999997432 125899999998753 124569999999999999
Q ss_pred CCHHHHHHHHHhcCCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEE
Q 045930 95 LTVRETIAYSAHLRLPS----NMNNEEITDV-IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLF 169 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lll 169 (661)
+||+||+.|+++++.|. +.++++..++ ++++++.+||++++|+++|+..+++|||||||||+||++|+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999999887653 2345554444 577899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHhcCCCCCCC
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTR 248 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~~~~ 248 (661)
|||||+|||+.++.++++.|++++++ |+|||+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999975 99999999999889999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHHHhhhccccc------
Q 045930 249 RNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQGISSIE------ 322 (661)
Q Consensus 249 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~------ 322 (661)
.||+||++++++.+.+..... .+. ......+++.+.|++|+.+++..++++......
T Consensus 313 ~n~aDfl~~~~~~~~~~~~~~-------~e~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 375 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIKPG-------YEK----------KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTK 375 (1394)
T ss_pred CChHHHHHhccChhhhhcccc-------ccc----------cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhH
Confidence 999999999876542211000 000 001223568999999988777666554321110
Q ss_pred -------c----cccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 045930 323 -------G----LEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGS 391 (661)
Q Consensus 323 -------~----~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~ 391 (661)
. ........+..++|+|+++|++|++++++|||.++++|+++++++|+++|++||+++++++++++|.|
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g 455 (1394)
T TIGR00956 376 EAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGG 455 (1394)
T ss_pred HHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Confidence 0 00011223568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHH
Q 045930 392 CAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYA 471 (661)
Q Consensus 392 ~~~f~~~~~~~~s~~~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f 471 (661)
++||++.++.|+++..++.+++||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|
T Consensus 456 ~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f 535 (1394)
T TIGR00956 456 ALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFY 535 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhC
Q 045930 472 GLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLI 551 (661)
Q Consensus 472 ~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~ 551 (661)
+++++++.++++++++++++++||+.+|+.+++++++++++|+||+++.++||+| |+| ++|+||++|||||++.|||+
T Consensus 536 ~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~-~~W-~~yisp~~yafeal~~nef~ 613 (1394)
T TIGR00956 536 LLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGW-SKW-IYYVNPLAYAFESLMVNEFH 613 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHH-HHH-HHHcCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999985 999 99999999999999999999
Q ss_pred CCccccCC--C----------------------CCCCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 552 GLEFDAID--R----------------------DGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKF 607 (661)
Q Consensus 552 g~~~~~~~--~----------------------~~~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 607 (661)
|.+++|.. | |.+.++|+++|+..++++.++ .|+|++||++++++|++++++++.+
T Consensus 614 ~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 614 GRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred CCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988741 1 113468999999767887654 9999999999999999999999988
Q ss_pred Hhh
Q 045930 608 REK 610 (661)
Q Consensus 608 ~~~ 610 (661)
...
T Consensus 693 ~~~ 695 (1394)
T TIGR00956 693 NKG 695 (1394)
T ss_pred ccc
Confidence 763
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-102 Score=957.72 Aligned_cols=578 Identities=27% Similarity=0.412 Sum_probs=508.8
Q ss_pred eEEEEEEEEEeecCCc-------ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee
Q 045930 2 YLVWEEVTVVVPNFGS-------GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~ 74 (661)
.++|+||+|.++.... ...+++|+|||++++|||++|||||||||||||||+|+|+.+++ ..+|+|.+||.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCcc
Confidence 6899999999864321 12357999999999999999999999999999999999997643 358999999987
Q ss_pred ccc--ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 75 RRL--DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 75 ~~~--~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
... .++.+|||+|+|.+++.+||+|||.|++.+++|...+++++.++++++++.+||.+++|+.+|++.+++||||||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 532 245699999999999999999999999988877666677777889999999999999999999877789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-CeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG-GETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~-G~~v~~G~~ 231 (661)
|||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++ |+++|+|++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 9999999999999999999999999999999999999999999999999999998778999999999995 899999996
Q ss_pred ----CChhHHHHhc-CCC-CCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcC
Q 045930 232 ----KSAPTFFAEA-GFP-CPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCS 305 (661)
Q Consensus 232 ----~~~~~~f~~~-g~~-~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s 305 (661)
+++.+||+++ |++ ||+..|||||++++++.+.+. ....++.+.|++|
T Consensus 1106 ~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------------------------~~~~d~~~~~~~s 1158 (1470)
T PLN03140 1106 GRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------------------------KLGIDFAEHYKSS 1158 (1470)
T ss_pred ccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------------------------cccchHHHHHhcc
Confidence 5789999997 664 999999999999987542110 0113578999999
Q ss_pred HHHHHHHHHhhhccccccc--ccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh
Q 045930 306 EYATRARSRIQGISSIEGL--EFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNY 383 (661)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~ 383 (661)
+.+++..+.+++....... .......+.++|++|+++|++|+++++||||.++++|+++++++|+++|++||+++++.
T Consensus 1159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~ 1238 (1470)
T PLN03140 1159 SLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKR 1238 (1470)
T ss_pred HHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 8887776655443321111 11112346789999999999999999999999999999999999999999999999875
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 045930 384 ---TAIYARGSCAAFISGFMTFMSI-GGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMV 459 (661)
Q Consensus 384 ---~~i~~r~~~~~f~~~~~~~~s~-~~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~ 459 (661)
.++++|.|++|+.+.++.+..+ ..+|.|..||+||+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+
T Consensus 1239 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~ 1318 (1470)
T PLN03140 1239 SNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMV 1318 (1470)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677889999988888777554 567999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHH
Q 045930 460 KFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGA 539 (661)
Q Consensus 460 gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ 539 (661)
||+++++.||+|+++++++.++++++|+++++++||..+|.++++++++++++|+||+++.++||+| |+| ++|+||++
T Consensus 1319 Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~-~~W-~~~isp~~ 1396 (1470)
T PLN03140 1319 AFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKW-WVW-YYWICPVA 1396 (1470)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchH-HHH-HHHcCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 999 99999999
Q ss_pred HHHHHHHHhhhCCCccccCCCCC-CCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 540 WALQGAYKNDLIGLEFDAIDRDG-PKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 540 ya~e~l~~nef~g~~~~~~~~~~-~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
|+++|++.|||.|.+++|.+++. +..++++++..+||++.++ .|++++++++++++|++++++++|+.+.
T Consensus 1397 y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1397 WTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccc-ccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999887766653 2357889988889998664 8999999999999999999999987654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-101 Score=944.24 Aligned_cols=572 Identities=23% Similarity=0.367 Sum_probs=493.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--ccCeEEEEecCCCCCCCCCH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTV 97 (661)
.+.||+|||+.++|||+++|+||||||||||||+|+|++++....+|+|.+||++... .++.++||+|+|.+++++||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4679999999999999999999999999999999999998765579999999987532 25679999999999999999
Q ss_pred HHHHHHHHhcCCCC-------CCCHHHH------------------------HHHHHHHHHHcCCCccccccccCccccc
Q 045930 98 RETIAYSAHLRLPS-------NMNNEEI------------------------TDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 98 ~E~l~~~~~l~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
+||+.|+++++.+. ..+++++ +..++++++.+||++++||.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998876321 1112221 1236789999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|||+++|||+++++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999999999999999999987 4899999999998899999999999999999
Q ss_pred EEecCCCChhHHHHhcCCCCCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcC
Q 045930 226 VYFGEAKSAPTFFAEAGFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCS 305 (661)
Q Consensus 226 v~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s 305 (661)
+|+|+++++.+||+++||+||++.|||||++++++.+.+.. .. . ....|... ...++++++|++|
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~-~~-----~-----~~~~p~~~----~~~~~~~~~~~~s 481 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ-YW-----A-----DRNKPYRY----ISVSEFAERFKSF 481 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh-hh-----h-----ccCCcccc----CCHHHHHHHHHhc
Confidence 99999999999999999999999999999999887532110 00 0 00011000 1235689999999
Q ss_pred HHHHHHHHHhhhccccc--ccccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCh
Q 045930 306 EYATRARSRIQGISSIE--GLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNY 383 (661)
Q Consensus 306 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~ 383 (661)
+.+++..++++...... .......+.+..+++.|++.|++|++++++||+.+++.|+++.+++|+++|++||+++.++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~ 561 (1470)
T PLN03140 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561 (1470)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 88777666554321111 0000112346688999999999999999999999999999999999999999999997543
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 045930 384 ---TAIYARGSCAAFISGFMTFMSIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVK 460 (661)
Q Consensus 384 ---~~i~~r~~~~~f~~~~~~~~s~~~~~~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~g 460 (661)
.+.+.+.|++||.+.+++|.+++.++.+++||+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+|
T Consensus 562 ~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~G 641 (1470)
T PLN03140 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIG 641 (1470)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 34566778888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHH
Q 045930 461 FRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540 (661)
Q Consensus 461 l~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~y 540 (661)
|++++++||+|+++++++.++++++++++++++||+.+|+.+++++++++++|+||+++.++||+| |+| ++|+||++|
T Consensus 642 l~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w-~~W-~~yisp~~Y 719 (1470)
T PLN03140 642 FAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNW-WEW-AYWVSPLSY 719 (1470)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchH-HHH-HHHhCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985 999 999999999
Q ss_pred HHHHHHHhhhCCCccccC-CCCCCCcCHHHHHHhhhCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045930 541 ALQGAYKNDLIGLEFDAI-DRDGPKLKGDVILKTMLGMNLDR-SKWWDLAVVVAILISYRVIFFAILKFRE 609 (661)
Q Consensus 541 a~e~l~~nef~g~~~~~~-~~~~~~~~G~~~L~~~~~~~~~~-~~w~~~~il~~~~~~~~~l~~~~L~~~~ 609 (661)
||||++.|||.+..+.+. ..+.+...|+++|+. +|+..++ ..|+|+++|++++++|+++++++|++..
T Consensus 720 a~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 720 GFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHhccCccccCcccCCCCcccHHHHHHh-cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998776432 123356799999975 7886543 4799999999999999999999999876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-100 Score=935.36 Aligned_cols=574 Identities=24% Similarity=0.416 Sum_probs=499.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-cccC
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYG 80 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~~~~ 80 (661)
.++|+||++.++. ++.++.+|+|||++++|||++||+||||||||||||+|+|+.+++...+|+|.+||++.. ..++
T Consensus 759 ~l~~~nl~~~~~~--~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKI--KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred eEEEEeeEEEecC--CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 3789999999853 223467999999999999999999999999999999999998754345799999999863 2356
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
.+|||+|+|.+++.+||+||+.|++.++.|...++++++++++++++.+||++++|+.+|+.. .+|||||||||+||+|
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVE 915 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHH
Confidence 799999999999999999999999998877666777778899999999999999999998543 3899999999999999
Q ss_pred HhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC-eEEEecCC----CCh
Q 045930 161 ILTRPQ-LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG-ETVYFGEA----KSA 234 (661)
Q Consensus 161 L~~~P~-lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G-~~v~~G~~----~~~ 234 (661)
|+.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~ 995 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTI 995 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchH
Confidence 999997 999999999999999999999999999889999999999987788999999999987 99999997 567
Q ss_pred hHHHHhcCC-CCCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHH
Q 045930 235 PTFFAEAGF-PCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARS 313 (661)
Q Consensus 235 ~~~f~~~g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~ 313 (661)
.+||++.|+ +||++.|||||++++++.+.+. +..+++.+.|+.|+..++..+
T Consensus 996 ~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~---------------------------~~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 996 INYFEKHGAPKCPEDANPAEWMLEVIGAAPGA---------------------------HANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHhhccccc---------------------------chhccHHHHHhcCHHHHHHHH
Confidence 899999996 9999999999999988653211 001347788888887766655
Q ss_pred Hhhhccccc----cc-ccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 045930 314 RIQGISSIE----GL-EFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYA 388 (661)
Q Consensus 314 ~~~~~~~~~----~~-~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~ 388 (661)
+++...... .. .......+.++|++|+++|++|+++++||||.++++|+++++++|+++|++||++++++.++++
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~ 1128 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQN 1128 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 543322110 00 0111234678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHH
Q 045930 389 RGSCAAFISGFMTFMSIGGFPSFIEEMRVF-SRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISH 467 (661)
Q Consensus 389 r~~~~~f~~~~~~~~s~~~~~~~~~er~vf-~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~ 467 (661)
|.+++|+++.+..+.....+|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++..
T Consensus 1129 ~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~ 1208 (1394)
T TIGR00956 1129 QMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASK 1208 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccc
Confidence 999999888877776667789999999886 9999999999999999999999999999999999999999999988766
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHH
Q 045930 468 -------FIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAW 540 (661)
Q Consensus 468 -------f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~y 540 (661)
|++|++++++..++++++|+++++++||..+|..+++++++++++|+||+++.++||.+ |+| ++|+||++|
T Consensus 1209 ~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~-~~w-~~~~sp~~y 1286 (1394)
T TIGR00956 1209 TGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF-WIF-MYRCSPFTY 1286 (1394)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHH-HhH-HHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 999 999999999
Q ss_pred HHHHHHHhhhCCCccccCCC-------------------------------C----C---CCcCHHHHHHhhhCCCCCch
Q 045930 541 ALQGAYKNDLIGLEFDAIDR-------------------------------D----G---PKLKGDVILKTMLGMNLDRS 582 (661)
Q Consensus 541 a~e~l~~nef~g~~~~~~~~-------------------------------~----~---~~~~G~~~L~~~~~~~~~~~ 582 (661)
+++|++.|||.|.+++|... + + +..+|+++|+. ++++.+ +
T Consensus 1287 ~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~-~ 1364 (1394)
T TIGR00956 1287 LVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS-G 1364 (1394)
T ss_pred HHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc-c
Confidence 99999999999988766321 0 1 13589999997 577654 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 583 KWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 583 ~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
.|+|+++++++++++ ++++++|+++.|
T Consensus 1365 ~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1365 RWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred cccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 899999999999988 778887877644
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-99 Score=873.35 Aligned_cols=576 Identities=29% Similarity=0.451 Sum_probs=506.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-c-ccC
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-L-DYG 80 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~-~~~ 80 (661)
..|+|+.++++. ++.++++|+|||+.++||.++||||+||||||||||+||||...+ .++|+|++||.+.. . .+|
T Consensus 788 ~~w~dl~~~~~~--qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 788 FYWVDLPYEMPI--QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred EEEEeCCccccc--cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhcc
Confidence 468888888875 346789999999999999999999999999999999999998654 47999999999865 2 367
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
.+|||.|+|.|.+.+||||.|.|+|.+|+|...+.+++.+.|+++++.++|++++|..||.++ +|||.+||||++||.|
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999988 9999999999999999
Q ss_pred HhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecCCCC----h
Q 045930 161 ILTRP-QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-GGETVYFGEAKS----A 234 (661)
Q Consensus 161 L~~~P-~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G~~v~~G~~~~----~ 234 (661)
|+.+| .||||||||||||+.+|..|++.+|++++.|+||+||+|||+.++++.||++++|+ +|++||+|+..+ +
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~l 1023 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKL 1023 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999997 789999999865 4
Q ss_pred hHHHHhcC-CCCCCCCCchhHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHH
Q 045930 235 PTFFAEAG-FPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARS 313 (661)
Q Consensus 235 ~~~f~~~g-~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~ 313 (661)
++||++.| .+||+..|||||+++++....+. +...++.+.|++|+.++++.+
T Consensus 1024 i~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---------------------------~~~~D~a~~w~~S~e~k~~~e 1076 (1391)
T KOG0065|consen 1024 IEYFESIGGVKCISDENPAEWMLEVIGAGAEA---------------------------SLSVDFAEIWKNSEEYKRNKE 1076 (1391)
T ss_pred HHHHHhcCCccCCCCCChHHHHHhhccccccc---------------------------ccCccHHHHHhccHHHHHHHH
Confidence 56999985 99999999999999998653211 112368999999999999998
Q ss_pred Hhhhccccc---ccccccCCCCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 045930 314 RIQGISSIE---GLEFKRKNGSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARG 390 (661)
Q Consensus 314 ~~~~~~~~~---~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~ 390 (661)
.+++..... ....+..+++.+|+|.|++.+++|++..+||+|.|+++|++..++.||++|+.||++|.+..+++|..
T Consensus 1077 ~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m 1156 (1391)
T KOG0065|consen 1077 LVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAM 1156 (1391)
T ss_pred HHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHH
Confidence 887765432 12222345577999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHH
Q 045930 391 SCAAFISGFMTFMSIGGFP-SFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFI 469 (661)
Q Consensus 391 ~~~~f~~~~~~~~s~~~~~-~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~ 469 (661)
+.+|..+.+..-...+..| .+..||.+++||+.+|+|+..+|++|.+++|+|+.++++++|.+|+|+|+|+..++.+|+
T Consensus 1157 ~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~ 1236 (1391)
T KOG0065|consen 1157 GAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFF 1236 (1391)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHH
Confidence 9888776665544444444 455689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhh
Q 045930 470 YAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKND 549 (661)
Q Consensus 470 ~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~ne 549 (661)
+|++..+++.+..+++|+++.+++||.++|.++.+.+..++.+|+||+++++.||+| |+| ++|+||+.|.+++++.-+
T Consensus 1237 ~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~f-W~w-my~lsP~ty~l~gli~~~ 1314 (1391)
T KOG0065|consen 1237 WFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKF-WIW-MYYLSPVTYTLEGLISSQ 1314 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccce-eee-eeecCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999985 999 999999999999999999
Q ss_pred hCCCccccCCCCC------CCcCHHHHHHhhhC----CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 045930 550 LIGLEFDAIDRDG------PKLKGDVILKTMLG----MNLDRSKWWDLAVVVAILISYRVIFFAILKFREKAS 612 (661)
Q Consensus 550 f~g~~~~~~~~~~------~~~~G~~~L~~~~~----~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~ 612 (661)
+++.+-.|...+. +-.+-.++++.++| +..+.. -....+.+++.+++.+++....|+.++.+
T Consensus 1315 ~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~-a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1315 LGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPL-ATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred hCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCc-ceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 9998887754432 12344566777777 543321 22334566678888988888888887643
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-94 Score=834.63 Aligned_cols=573 Identities=27% Similarity=0.440 Sum_probs=506.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--ccCeEEEEecCCCCCCCCCHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
..+|+|+|+.++|||++.++||+||||||||++|+|.++......|+|.+||.+.+. .++.++|+.|+|.|+|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 479999999999999999999999999999999999987766668899999987643 257899999999999999999
Q ss_pred HHHHHHHhcCCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 99 ETIAYSAHLRLPSN----MNNEEITD-VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 99 E~l~~~~~l~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
|+|.|+++++.|.. .++.++.+ ..|.+++.+||++|+||+||+..+||+||||||||+||.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 99999999998732 33444332 67899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHhcCCCCCCCCCch
Q 045930 174 TSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPS 252 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~~~~~~~npa 252 (661)
|+|||+.++.++++.||++++. +.|+++++|||+++++++||+|++|++|++||+||.+++++||+++||.||++.++|
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 9999999999999999999985 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccCchhHHHHHHhhhhhhccCCCCCCCCCCCchhHHHHHHHHhhcCHHHHHHHHHhhhcccccccc--cccCC
Q 045930 253 DHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKKYRCSEYATRARSRIQGISSIEGLE--FKRKN 330 (661)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~ 330 (661)
||+.++++. .+..+... ....+... -...++.+.|.+++.+++...+++....+.... ....+
T Consensus 368 DfLt~vts~-k~~~~~~~----------~~~~~~~~----~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~ 432 (1391)
T KOG0065|consen 368 DFLTEVTSK-KDQEQYWN----------KRSKPYPY----TSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSS 432 (1391)
T ss_pred HHHHHhhcC-cccccccc----------ccCCCccc----CCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCC
Confidence 999998872 22111110 00111111 113568999999999998888776544322111 11234
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045930 331 GSQAKWWKQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDVG-TNYTAIYARGSCAAFISGFMTFMSIGGFP 409 (661)
Q Consensus 331 ~~~~s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~-~~~~~i~~r~~~~~f~~~~~~~~s~~~~~ 409 (661)
.+..+.|.|+++|++|.|..+.||..++..++++.+++|+++|++||+++ .+..+.+.|+|++||...+.+|++++.++
T Consensus 433 ~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~ 512 (1391)
T KOG0065|consen 433 KYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIA 512 (1391)
T ss_pred ceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHH
Confidence 46689999999999999999999999999999999999999999999999 77778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 410 SFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMI 489 (661)
Q Consensus 410 ~~~~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i 489 (661)
..++.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||++++++||+++|.++++..++.++++++
T Consensus 513 ~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~i 592 (1391)
T KOG0065|consen 513 LTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFI 592 (1391)
T ss_pred HHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCC----------
Q 045930 490 ASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAID---------- 559 (661)
Q Consensus 490 ~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~---------- 559 (661)
++++++...|+.+|++.++++.+++||+|+.++||+| |+| ++|+||+.||+|+++.|||+|++++|..
T Consensus 593 a~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W-~~W-i~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~ 670 (1391)
T KOG0065|consen 593 ASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPW-FRW-IAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISI 670 (1391)
T ss_pred HHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchH-HHH-HHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccc
Confidence 9999999999999999999999999999999999975 999 9999999999999999999999988861
Q ss_pred -----------CCCCCcCHHHHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045930 560 -----------RDGPKLKGDVILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREKA 611 (661)
Q Consensus 560 -----------~~~~~~~G~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 611 (661)
+|...+.|+++++..|+++..+ .|+|+||++|+.++|.++..+++-+.+..
T Consensus 671 ~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 671 ENKVCAATGATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred ccccchhhccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1224467888887777776544 89999999999999999998877766543
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=395.10 Aligned_cols=216 Identities=26% Similarity=0.424 Sum_probs=196.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
+.++++|++..+. ..++|+|||+++++||+++|+|||||||||||+||.|+..++ +|+|.++|....
T Consensus 1 ~mi~i~~l~K~fg------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 1 MMIEIKNLSKSFG------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKD 71 (240)
T ss_pred CeEEEEeeeEEeC------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhh
Confidence 3578999999885 367999999999999999999999999999999999998874 999999997532
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..++.+|+|+|+.+|||++||.||+.++...- .+.++++.+++..++|+.+||.+.+|.+++ +||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCcHHHHH
Confidence 23678999999999999999999999985421 257789999999999999999999999875 699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|+++++|||||+|||....++.+.+++||++|.|.||+||+. ....+.+|||+.|++|+++..|++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999996 58889999999999999999997654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-49 Score=397.54 Aligned_cols=218 Identities=28% Similarity=0.390 Sum_probs=199.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
+++++++..+... .+....+|+|||++|++||++||+|.||||||||+++|.++..|+ +|+|.++|++..
T Consensus 2 I~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAE 77 (339)
T ss_pred eEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHH
Confidence 6899999888752 233457999999999999999999999999999999999999884 999999997642
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..+++||+++|+..|+...||.||+.|.+++. +.++++++++|.++++.+||++.+|+++. +||||||||
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~-----qLSGGQKQR 149 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPA-----QLSGGQKQR 149 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCch-----hcCcchhhH
Confidence 23678999999999999999999999998875 47899999999999999999999999875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|+||++|||||.|||.++..|++.|+++.++ |.||+++||++ +.+.++||||.+|++|++++.|+..+
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~ 228 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSE 228 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHH
Confidence 99999999999999999999999999999999999999876 99999999996 68899999999999999999998764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=405.94 Aligned_cols=221 Identities=36% Similarity=0.527 Sum_probs=197.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|++..++. .+.+|+||||++++||++|++||||||||||+|+|+|+.++ .+|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHHH
Confidence 4678899988752 36799999999999999999999999999999999999988 49999999987532
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++++||++|++.+++.+||+|+|.|.+.++.+. .++.+++++++++.+||.+..+++++ +||+||||||+|
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~i 147 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSI 147 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHH
Confidence 3567999999999999999999999999987432 25567789999999999986666664 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g-~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
|+||+.+|++|||||||+|||+.++..+.+.|++++++| +||++|||++ +++..+||+|++|++|++++.|++++...
T Consensus 148 a~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 148 ALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999987 8999999997 68999999999999999999998777555
Q ss_pred HHH
Q 045930 237 FFA 239 (661)
Q Consensus 237 ~f~ 239 (661)
.+.
T Consensus 227 ~~~ 229 (293)
T COG1131 227 KFG 229 (293)
T ss_pred hhc
Confidence 544
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=391.58 Aligned_cols=221 Identities=34% Similarity=0.461 Sum_probs=194.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
+.|+.+||++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|.+++. +|+|.++|++...
T Consensus 1 ~~L~~~~ls~~y~------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 1 MMLEVENLSFGYG------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSP 71 (258)
T ss_pred CeeEEEEEEEEEC------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCH
Confidence 4689999999986 378999999999999999999999999999999999999884 9999999987532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..+.+|||||+......+||+|.+.++..-+... ....++.++.+++.|+.+|+.+.+++.+. +||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHH
Confidence 2468999999998888999999999874322111 11123335579999999999999999986 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|.||+||+++|++|+||||||.||...+.++++.+++++++ |+|||+++||++ ....+||++++|++|++++.|++++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcch
Confidence 99999999999999999999999999999999999999964 999999999984 7899999999999999999999987
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
+..
T Consensus 226 vlT 228 (258)
T COG1120 226 VLT 228 (258)
T ss_pred hcC
Confidence 653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-48 Score=380.63 Aligned_cols=216 Identities=26% Similarity=0.449 Sum_probs=198.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++|+|+|..+. ++++++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||++...
T Consensus 2 I~~~nvsk~y~------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYG------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcC------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHH
Confidence 68999998875 377999999999999999999999999999999999999984 9999999998642
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccccccCHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--DCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.||||-|.-.|||++||.||+.+...+. ++++++++++++++|+.+||+ +.+++++ ++|||||+|||
T Consensus 73 LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----~eLSGGQQQRV 144 (309)
T COG1125 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYP-----HELSGGQQQRV 144 (309)
T ss_pred HHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----hhcCcchhhHH
Confidence 2678999999999999999999999987764 578899999999999999996 4788876 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
.+||||+.+|++|++|||+++|||-++.++.+.++++.++ |+|||++|||. +|.++++|||.+|++|+++..++|++.
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999876 99999999995 799999999999999999999998765
Q ss_pred hH
Q 045930 235 PT 236 (661)
Q Consensus 235 ~~ 236 (661)
+.
T Consensus 224 l~ 225 (309)
T COG1125 224 LA 225 (309)
T ss_pred Hh
Confidence 43
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=380.17 Aligned_cols=208 Identities=31% Similarity=0.467 Sum_probs=182.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
++.+|++..+... +....+|++||++|++||+++|+||||||||||||+|+|+.+| .+|.|.++|++..
T Consensus 2 i~~~~v~k~y~~~--~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLG--GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccC--CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHHH
Confidence 5688999887642 1226799999999999999999999999999999999999988 4999999997532
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCccccccCHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD-RLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-~~vg~~~~~~LSgGer 152 (661)
.+++.+|||+|+..|+|++||+||+.+++.+. .....+.+++++++++.+||.+..+ +++ .+||||||
T Consensus 77 ~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqq 148 (226)
T COG1136 77 LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQ 148 (226)
T ss_pred HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHH
Confidence 23567999999999999999999999887654 2233356778999999999997766 656 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||+|||||+.+|+++++||||.+||+.++..|++.|++++++ |+|||++|||| ++...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999876 99999999997 68999999999999983
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=382.06 Aligned_cols=204 Identities=31% Similarity=0.443 Sum_probs=187.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.+.++++++.+.. .++|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.......
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCC
Confidence 5788999988853 67999999999999999999999999999999999999984 99999999987555678
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++||+|++.++|.+||+||+.++...+ ..++++.++++++.|+.+||.+..|+++ ++|||||||||+|||||
T Consensus 74 ~~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL 145 (248)
T COG1116 74 IGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EEEEeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHH
Confidence 999999999999999999999998775 2566777789999999999999999987 46999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
+.+|++|+||||++.||+.++..+.+.|.++.++ ++||+++|||. +|...++|||++|+++
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999998764 89999999996 6899999999999984
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=383.09 Aligned_cols=218 Identities=31% Similarity=0.491 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc--c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD--Y 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~--~ 79 (661)
.++++|+++.+.+ . ++|+|||+++++|++++|+||||||||||+|+|.|+++| .+|+|.++|++.... +
T Consensus 4 ~i~v~nl~v~y~~-----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p---~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 4 MIEVENLTVSYGN-----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP---SSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred EEEEeeeEEEECC-----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---CcceEEEccccccccccC
Confidence 6899999999853 2 599999999999999999999999999999999999988 499999999875433 3
Q ss_pred CeEEEEecCCC--CCCCCCHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 80 GGVAYVTQENI--MLGTLTVRETIAYSAHLRLP--SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 80 ~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+||||||... .-..+||+|.+..+..-+.+ ...++++ +++++++|+.+|+.+.+|+.+|+ |||||+|||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV 148 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRV 148 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHH
Confidence 68999999642 22346999999987433221 1223344 78899999999999999999985 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+ ..+.++||+|++|++ ++++.|+++++.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 999999999999999999999999999999999999999999999999997 579999999999975 678999988754
Q ss_pred H
Q 045930 236 T 236 (661)
Q Consensus 236 ~ 236 (661)
+
T Consensus 227 ~ 227 (254)
T COG1121 227 T 227 (254)
T ss_pred C
Confidence 3
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=373.80 Aligned_cols=217 Identities=29% Similarity=0.453 Sum_probs=196.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
-++++++++.+. ++.|++|||++|++||+++|||||||||||||++|.|+++|. +|+|.++|++..
T Consensus 8 ~I~vr~v~~~fG------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 8 LIEVRGVTKSFG------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78 (263)
T ss_pred eEEEeeeeeecC------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHH
Confidence 478999998774 478999999999999999999999999999999999999984 999999998742
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGer 152 (661)
..++++|+++|...||..|||+||+.|..+-+ ...+++..++.+..-|+.+||... +|.++ .+|||||+
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----sELSGGM~ 151 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYP-----SELSGGMR 151 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----hhhcchHH
Confidence 12577999999999999999999999986543 356788889999999999999876 77765 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||+++||||+.||+++|+||||+||||.++..+.+++++|.+. |.|++++|||. ++++..||++++|.+|+++..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999999886 99999999996 689999999999999999999998
Q ss_pred CChh
Q 045930 232 KSAP 235 (661)
Q Consensus 232 ~~~~ 235 (661)
++..
T Consensus 231 ~el~ 234 (263)
T COG1127 231 EELL 234 (263)
T ss_pred HHHH
Confidence 7654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-47 Score=398.17 Aligned_cols=217 Identities=28% Similarity=0.446 Sum_probs=200.0
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---c
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---L 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~ 77 (661)
+.|+++|++..+++ .. +|+|+|+++++||+++|+||||||||||||+|||+.+++ +|+|.++|+... .
T Consensus 2 ~~i~l~~v~K~yg~-----~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P 72 (338)
T COG3839 2 AELELKNVRKSFGS-----FE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPP 72 (338)
T ss_pred cEEEEeeeEEEcCC-----ce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh
Confidence 47899999998753 12 999999999999999999999999999999999999884 999999999764 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
..|.+|+|+|+..|||+|||+||+.|+++.+ ..++++++++|+++.+.++|++..|+++. +|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHHHHHH
Confidence 3578999999999999999999999999876 56789999999999999999999999874 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||||+++|+++++|||+|+||...+..+...|+++.++ |.|+|.+|||. .|+..++|||.+|++|++...|++.++-
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 99999999999999999999999999999999999876 89999999996 6899999999999999999999987653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=371.47 Aligned_cols=222 Identities=27% Similarity=0.413 Sum_probs=194.3
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
+.++++|++.++++ ++++|+|||++|++||++||+|||||||||||++|+|+..++ +|+|.+||....
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccch
Confidence 56899999999873 478999999999999999999999999999999999998874 899999996532
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-----NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
..++++||++|++.+.+.+||.||+..+..-+.+. +.-.++.+..+-+.|+.+|+.+.+-++.++ |
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~-----L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST-----L 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-----C
Confidence 12578999999999999999999998775332221 122234456678899999999999988864 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
||||+|||+|||||+.+|++++.|||+++|||.++.++|+.|+++++ +|.|||++.||. +...++|||++-|++|+++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999987 599999999996 6788999999999999999
Q ss_pred EecCCCChhH
Q 045930 227 YFGEAKSAPT 236 (661)
Q Consensus 227 ~~G~~~~~~~ 236 (661)
|+|+++++.+
T Consensus 228 fDg~~~el~~ 237 (258)
T COG3638 228 FDGPASELTD 237 (258)
T ss_pred EeCChhhhhH
Confidence 9999987554
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=363.91 Aligned_cols=215 Identities=30% Similarity=0.431 Sum_probs=197.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LD 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~ 78 (661)
|+.++++..+++ ..++++||||+++.||+++|+|||||||||+|++|++++.|+ +|.|+++|-+.. ..
T Consensus 2 l~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHH
Confidence 677888877753 345899999999999999999999999999999999999984 999999997642 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+++||.++.+..++..||++|||.|.+++. ++++.+.+++++++.+.++|.+++|+++|+ +|.|+||||+||
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iA 145 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIA 145 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHH
Confidence 678999998889999999999999999885 678889999999999999999999999985 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+++|+++++||||||||..+...+.+.++++.++|++||++||.. +++.++||+|++|++|++++.|+.++.
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 999999999999999999999999999999999999999999999995 689999999999999999999997653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=397.07 Aligned_cols=216 Identities=28% Similarity=0.456 Sum_probs=198.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.++++|++..+. +..+++|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++.. ..
T Consensus 5 ~l~i~~v~k~yg------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 5 ALEIRNVSKSFG------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75 (352)
T ss_pred eEEEEeeeeecC------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChh
Confidence 588999998874 367999999999999999999999999999999999999884 999999999864 34
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+|.+|+|+|+-.|||+|||+||+.|+++++ ....+++++++|+++++.++|++.+++++. +|||||+|||++|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----qLSGGQqQRVALA 148 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPH-----QLSGGQQQRVALA 148 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChh-----hhChHHHHHHHHH
Confidence 688999999999999999999999998743 234567789999999999999999999874 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||. .|...++|||.+|++|++...|++++.
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence 9999999999999999999999999999999999875 99999999996 689999999999999999999998754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=378.42 Aligned_cols=219 Identities=27% Similarity=0.428 Sum_probs=198.1
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe---ecc-
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRR- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~---~~~- 76 (661)
|.+.++++++.++. ..+++|||+.|+.||++|++|||||||||||++|||+..|+ .|.|.+||+ +.+
T Consensus 1 m~i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 1 MSIRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSN 71 (345)
T ss_pred Cceeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhc
Confidence 67888888887753 56899999999999999999999999999999999999984 899999998 432
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
...++||||+|+..+|++|||.||+.|+++.+ ....++.+++.+++++|+.+.|++.+++++ .+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHH
Confidence 23478999999999999999999999999876 223456778899999999999999999976 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++||||+.+|++|+||||+++||..-+.++-+-|+++.++ |.|++++|||+ .|+.+++|||++|++|+|...|++++
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 99999999996 69999999999999999999999887
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
+-
T Consensus 225 v~ 226 (345)
T COG1118 225 VY 226 (345)
T ss_pred Hh
Confidence 53
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-46 Score=351.42 Aligned_cols=211 Identities=27% Similarity=0.410 Sum_probs=192.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
+.|+|++..|+. .+.+|+||||.+++||++-|+||||||||||||+|.+..+|+ .|+|++||.+..
T Consensus 2 I~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccc
Confidence 678999988764 367999999999999999999999999999999999999884 999999998742
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..+++||+|+||..+++..||.||+.|+.+.. +.++++++++|.++|+.+||.+.++..+ .+|||||+||
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSGGEQQR 145 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLSGGEQQR 145 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccCchHHHH
Confidence 23678999999999999999999999998765 5778899999999999999999998876 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|+||||++.+|++|+.||||.+||+..+.+|++++.++.+.|.||+++||| ...+..+-.+++.|++|+++.+..
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999999999999999999 456778889999999999987654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=387.13 Aligned_cols=216 Identities=26% Similarity=0.391 Sum_probs=193.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 7 ~i~i~~l~k~~~------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 7 PIDFRNVEKRYG------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARH 77 (306)
T ss_pred eEEEEeEEEEEC------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHH
Confidence 478999999874 256999999999999999999999999999999999999884 8999999987532
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+||+.+.+.++ +.+..+.+++++++++.++|.+..++.++ +||||||||++|
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~l 149 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTL 149 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999877653 23455566788999999999999999885 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||+|++|++|++++.|++++..
T Consensus 150 a~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999988899999999996 5899999999999999999999977653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=389.37 Aligned_cols=218 Identities=28% Similarity=0.397 Sum_probs=193.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+..+.+|+|||+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++...
T Consensus 2 I~~~~lsk~y~~--~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQ--GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECC--CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 789999998853 112357999999999999999999999999999999999999884 8999999987531
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.+||++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|+.++ +||||||||
T Consensus 77 l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LSgGqkQR 148 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLSGGQKQR 148 (343)
T ss_pred HHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHH
Confidence 2467999999999999999999999976542 24566777889999999999998888775 699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++||++ +.+.++||++++|++|++++.|++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999876 99999999996 57889999999999999999998754
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
.
T Consensus 228 v 228 (343)
T TIGR02314 228 I 228 (343)
T ss_pred H
Confidence 3
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=390.99 Aligned_cols=216 Identities=25% Similarity=0.406 Sum_probs=194.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---D 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~ 78 (661)
.|+++|+++.++. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... .
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCHH
Confidence 5899999998731 25699999999999999999999999999999999999987 48999999987532 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|++.++|++||+||+.|..+.+ ..++++.+++++++++.+||++..|++++ +|||||||||+||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvalA 146 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQRVAMG 146 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987643 24566677889999999999999998875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999876 99999999996 689999999999999999999997654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=389.72 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=194.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. ..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 4 YLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQ 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 5899999998852 56999999999999999999999999999999999999874 899999998753 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+||.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|+.+. +|||||||||+||
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~QRvaLA 146 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPG-----QLSGGQQQRVALA 146 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987643 34566778899999999999999998875 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999875 99999999997 589999999999999999999997654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=369.55 Aligned_cols=214 Identities=31% Similarity=0.488 Sum_probs=187.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFG------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhh
Confidence 46899999874 256999999999999999999999999999999999999874 8999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+...... ..+.++.+++++++++.+||.+..++.++ +||||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 144 (235)
T cd03261 72 LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKR 144 (235)
T ss_pred HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHH
Confidence 24569999999999999999999998754321 23455556788999999999888888775 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999874 89999999997 57889999999999999999987543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=387.30 Aligned_cols=215 Identities=23% Similarity=0.461 Sum_probs=194.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+.+ +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. ..
T Consensus 6 ~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 6 FVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred EEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 5889999998742 56999999999999999999999999999999999999884 899999998753 22
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..++|++||+||+.|..+.+ ..++++.+++++++++.+||.+..|+.+. .|||||||||+||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~QRVaLA 148 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVD-----QISGGQQQRVALA 148 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987653 34566778899999999999999888874 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~ 224 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQEL 224 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999875 89999999996 689999999999999999999998654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-45 Score=358.40 Aligned_cols=220 Identities=28% Similarity=0.377 Sum_probs=191.0
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
+.|+.+||++.++.. +...++|+|||+++.+||.++|+|+||||||||.++|+|+.++ .+|+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~--~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p---~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 2 TLLSVRNLSIVYGGG--KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP---SSGSILLDGKPLAPKKR 76 (252)
T ss_pred ceEEEeceEEEecCC--cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC---CCceEEECCcccCcccc
Confidence 468999999999752 1223699999999999999999999999999999999999988 49999999976432
Q ss_pred ---ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHH
Q 045930 78 ---DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 ---~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGe 151 (661)
.++.|.+|+||+ .+.|..||++.|.-+.+.. +.++ .++++.++++.+||.+ .+++++ .+|||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~--~~~~i~~~L~~VgL~~~~l~R~P-----~eLSGGQ 146 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSK--SQQRIAELLDQVGLPPSFLDRRP-----HELSGGQ 146 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccH--HHHHHHHHHHHcCCCHHHHhcCc-----hhcChhH
Confidence 357899999997 5889999999999887642 3333 3445999999999964 677766 4699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||++|||||+.+|++||||||||+||+..+.+|+++|.++.++ |.|.|+++||. ..+..+||||++|++|++++.++
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeec
Confidence 99999999999999999999999999999999999999999886 89999999995 68999999999999999999999
Q ss_pred CCChhH
Q 045930 231 AKSAPT 236 (661)
Q Consensus 231 ~~~~~~ 236 (661)
.++...
T Consensus 226 ~~~l~~ 231 (252)
T COG1124 226 TEELLS 231 (252)
T ss_pred hhhhhc
Confidence 876543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=352.94 Aligned_cols=232 Identities=26% Similarity=0.412 Sum_probs=198.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~--- 76 (661)
.++.+||++.|. ++.+|+|||+.|++++++|+||||||||||||+++.... -++++.+|+|.++|+...
T Consensus 7 ~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 7 AIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred eeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 467889999885 377999999999999999999999999999999999875 356788999999998742
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHH
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGe 151 (661)
..++++|+|+|.|.-|| +|++||+.|+.+++- ...++.+++|++.|+.-.|. ++.|++-.+ ..+|||||
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s--a~~LSGGQ 154 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHKS--ALGLSGGQ 154 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhCC--ccCCChhH
Confidence 12678999999999999 899999999988763 33377889999999999984 456665332 34799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
+||++|||||+.+|+||+||||||+|||.++.+|-+++.+|++ .-|||++||.+ ....+..|+..++..|++|++|++
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCH
Confidence 9999999999999999999999999999999999999999985 68999999996 589999999999999999999997
Q ss_pred CChhHHHHhcCCCCCCCCCchhHH
Q 045930 232 KSAPTFFAEAGFPCPTRRNPSDHF 255 (661)
Q Consensus 232 ~~~~~~f~~~g~~~~~~~npad~~ 255 (661)
++. |..|.+.-..||+
T Consensus 233 ~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 233 DKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred Hhh--------hcCccHHHHHHHh
Confidence 653 3445554455543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=387.44 Aligned_cols=215 Identities=26% Similarity=0.431 Sum_probs=193.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee--eEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT--GNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~--G~i~~~g~~~~~-- 77 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. + |+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCC
Confidence 4789999998752 46999999999999999999999999999999999999874 7 999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++||+|+..++|.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|++++ +|||||||||+
T Consensus 76 ~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRva 147 (362)
T TIGR03258 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIA 147 (362)
T ss_pred HHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHH
Confidence 2467999999999999999999999987643 34566777889999999999999999875 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD--GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++|||+ +++..++|+|++|++|+++..|++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999876 79999999996 689999999999999999999997654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=385.62 Aligned_cols=219 Identities=25% Similarity=0.386 Sum_probs=194.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|.++|++...
T Consensus 1 ~~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 1 MSIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHA 71 (353)
T ss_pred CEEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 67899999998752 56999999999999999999999999999999999999874 8999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.++|.+||+||+.|....+.. ...+.++.+++++++++.+||++..|+++. +|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHH
Confidence 246799999999999999999999998654211 123456667889999999999998888875 69999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++ .++..++|++++|++|++++.|++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i 224 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQV 224 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999876 89999999996 689999999999999999999987654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=383.09 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=193.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++||++.++ ++.+|+||||++++||++||+||||||||||+++|+|+++++ +|+|.++|.+...
T Consensus 41 ~i~i~nl~k~y~------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 41 AIDLAGVSKSYG------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARL 111 (340)
T ss_pred eEEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHH
Confidence 478899999875 256999999999999999999999999999999999999884 8999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+||+.+.+.++ ..+..+.+++++++++.+||.+..++.++ +||||||||++|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~l 183 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTL 183 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999866543 23344556678899999999999999886 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
|+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+. +++.++||+|++|++|++++.|++++...
T Consensus 184 A~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 184 ARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999988899999999996 68999999999999999999999876543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=360.42 Aligned_cols=207 Identities=26% Similarity=0.404 Sum_probs=181.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPG----GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecC----CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEehhhcChhH
Confidence 789999998852 124699999999999999999999999999999999999887 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.++ +||||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 146 (216)
T TIGR00960 75 IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLSGGEQQR 146 (216)
T ss_pred HHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHH
Confidence 2357999999999999999999999876542 22344556778999999999988888775 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999987799999999997 578889999999999974
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=359.04 Aligned_cols=209 Identities=32% Similarity=0.494 Sum_probs=183.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++... .+
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcCcCchhh
Confidence 468899988742 5699999999999999999999999999999999999887 48999999986431 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.++ .||||||||++||+
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~ 143 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALAR 143 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHH
Confidence 57999999999999999999998875432 22344556678999999999988888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 144 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 144 ALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999874 89999999997 5788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=359.01 Aligned_cols=216 Identities=29% Similarity=0.392 Sum_probs=186.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++. ....+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++....++.+
T Consensus 1 l~~~~l~~~~~~--~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGG--GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCC--CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccccCcE
Confidence 468999988752 11125699999999999999999999999999999999999887 4899999998764445679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|++.+++.+||+||+.+....+ ....++..++++++++.+||++..++.++ +||||||||++||++|+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~ 147 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALA 147 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHH
Confidence 99999999999999999999876543 23344456778999999999988888775 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecCCC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAK 232 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~--~G~~v~~G~~~ 232 (661)
.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|+ +|+++..++.+
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999999999999999999999965 489999999997 47889999999999 79999888754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=364.55 Aligned_cols=218 Identities=24% Similarity=0.382 Sum_probs=188.6
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 1 MSIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDATDVPV 71 (239)
T ss_pred CEEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCc
Confidence 67999999998852 5699999999999999999999999999999999999887 48999999987431
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.++ +||||||||++
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHH
Confidence 235799999999999999999999987543210 001233445678899999999888888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 999999999999999999999999999999999999875 89999999997 57889999999999999999987643
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=360.47 Aligned_cols=213 Identities=27% Similarity=0.399 Sum_probs=187.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LD 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~ 78 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+.. ..
T Consensus 1 i~~~~~~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYG------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEEC------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecCcChHHH
Confidence 46889998874 25699999999999999999999999999999999999887 4899999997642 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||++..++.++ .||||||||++||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la 143 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIA 143 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHH
Confidence 357999999999999999999999876543 23344556678999999999988888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|+++..|++++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999999999999886 89999999997 57889999999999999999887643
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=376.94 Aligned_cols=217 Identities=29% Similarity=0.394 Sum_probs=191.0
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
+.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 3 VAIDLVGVSKSYG------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRAR 73 (303)
T ss_pred cEEEEEeEEEEeC------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHH
Confidence 3588999999874 256999999999999999999999999999999999999874 8999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.+||++|++.+++.+||+||+.+..... ..+.++.+++++++++.++|.+..++.++ +||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHH
Confidence 2467999999999999999999998765432 23344556678899999999998888875 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999988899999999997 5888999999999999999999876543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=363.48 Aligned_cols=216 Identities=31% Similarity=0.445 Sum_probs=193.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. .+.+|+|+|+.+++||.++|+|+||||||||+++|+|+++|. +|+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 3 MIEAENLSFRYPG-----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSL 74 (235)
T ss_pred eEEEEEEEEEcCC-----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhH
Confidence 5789999999864 167999999999999999999999999999999999999984 899999998743
Q ss_pred -cccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 -LDYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 -~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..++.+|||+|++ ..+-.-||.|.+.|+.... +.+.++.+++++++++.+|+.+.+++.+. .||||||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----~LSGGqkqR 146 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPF-----NLSGGQKQR 146 (235)
T ss_pred HHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCcc-----ccCCcceee
Confidence 2367899999997 3344559999999997653 46777899999999999999999988774 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||.+|+.+|++|+|||||+|||+..+..+++.++++.++ |+|||++|||. +.+..++|++++|++|+++++|++++
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99999999999999999999999999999999999999987 79999999995 68999999999999999999998654
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
+
T Consensus 226 i 226 (235)
T COG1122 226 I 226 (235)
T ss_pred H
Confidence 3
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=384.66 Aligned_cols=215 Identities=25% Similarity=0.414 Sum_probs=193.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. ..
T Consensus 14 ~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 14 LVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84 (375)
T ss_pred eEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 4789999998752 56999999999999999999999999999999999999874 899999998753 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++||+|++.++|.+||+||+.|+.+.+ ..++.+.+++++++++.+||++..|+++. +|||||||||+||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~QRVaLA 156 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQRVAIA 156 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987543 24556667789999999999999999875 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||..++..+.+.|++++++ |.|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i 232 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREI 232 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999875 99999999996 689999999999999999999987654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=383.63 Aligned_cols=215 Identities=26% Similarity=0.406 Sum_probs=192.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---D 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~ 78 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++... .
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHh
Confidence 5899999998742 56999999999999999999999999999999999999874 8999999987531 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||++..++.++ +|||||||||+||
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLA 145 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIG 145 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHH
Confidence 457999999999999999999999986543 23455667789999999999988888875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||+ +++..+||++++|++|+++..|++++.
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999875 89999999996 588999999999999999999987654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=374.16 Aligned_cols=217 Identities=28% Similarity=0.446 Sum_probs=193.2
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++ ++.+|+|+||++++||++||+|||||||||||++|+|+.++. +|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 1 MSIRVSSLTKLYG------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPK 71 (301)
T ss_pred CEEEEEEEEEEEC------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChH
Confidence 6789999999884 256999999999999999999999999999999999998874 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.+||++|++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||++..|+.++ .||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHH
Confidence 2467999999999999999999999877653 23445556778999999999999998875 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|++|++++.|+.++...
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999975 79999999996 58999999999999999999999776543
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=370.07 Aligned_cols=221 Identities=27% Similarity=0.396 Sum_probs=189.2
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.|+++|+++.++.. .+..+.+|+|||+++++||++||+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~y~~~-~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 1 MSIKIENLTHIYMEG-TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKV 76 (287)
T ss_pred CEEEEEEEEEECCCC-CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCc
Confidence 468999999988531 111256999999999999999999999999999999999999884 8999999987531
Q ss_pred ----ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccccccCHH
Q 045930 78 ----DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSgG 150 (661)
.++.+||++|++. .+...||+||+.+..... +.++++.+++++++++.+||. +..|+.+ +.||||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgG 148 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGG 148 (287)
T ss_pred cHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHH
Confidence 1457999999863 333579999999875432 345666778899999999997 6677766 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ .++..+||++++|++|++++.|
T Consensus 149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 99999999996 5788899999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
++++.
T Consensus 228 ~~~~~ 232 (287)
T PRK13637 228 TPREV 232 (287)
T ss_pred CHHHH
Confidence 87764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=360.84 Aligned_cols=213 Identities=27% Similarity=0.472 Sum_probs=186.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYG------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeC------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccCCHhH
Confidence 46889998874 24699999999999999999999999999999999999987 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+|+++..++.++ .||||||||++
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 143 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVE 143 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHH
Confidence 1346999999999999999999999865432 22344556678899999999988888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.+++|++++|++|++++.|+.++
T Consensus 144 la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 219 (232)
T cd03218 144 IARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEE 219 (232)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHH
Confidence 99999999999999999999999999999999999988899999999997 47999999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=354.67 Aligned_cols=209 Identities=26% Similarity=0.428 Sum_probs=184.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+... .+
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCccc
Confidence 468899988752 4699999999999999999999999999999999999887 48999999987531 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.++ .||||||||++||+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~lar 143 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGR 143 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHH
Confidence 57999999999999999999999875432 23345556778999999999988888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999875 89999999996 5788999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=361.58 Aligned_cols=216 Identities=29% Similarity=0.431 Sum_probs=186.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP---TSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEECCCCCHHH
Confidence 468899988742 4699999999999999999999999999999999999887 48999999987431
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN-------MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++.+||+||+.+....+.... ...++..++++++++.+||++..++.++ +|||
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG-----ELSY 146 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh-----hCCH
Confidence 13469999999999999999999998764321110 0134455678999999999988888764 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999999987899999999997 5788999999999999999988
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
++++
T Consensus 226 ~~~~ 229 (236)
T cd03219 226 TPDE 229 (236)
T ss_pred CHHH
Confidence 7654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=379.31 Aligned_cols=218 Identities=29% Similarity=0.433 Sum_probs=191.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. .+..+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 2 i~i~~l~~~y~~--~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQ--GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCC--CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHH
Confidence 789999998852 111357999999999999999999999999999999999999874 8999999987531
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ +.+.++.+++++++++.+||.+..++.++ +||||||||
T Consensus 77 ~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qR 148 (343)
T PRK11153 77 LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPA-----QLSGGQKQR 148 (343)
T ss_pred HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHH
Confidence 1357999999999999999999999876543 23455666789999999999988888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 57889999999999999999998654
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
.
T Consensus 228 ~ 228 (343)
T PRK11153 228 V 228 (343)
T ss_pred H
Confidence 3
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=375.43 Aligned_cols=203 Identities=26% Similarity=0.419 Sum_probs=182.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----ccCeEEEEecCCCCCCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----DYGGVAYVTQENIMLGTLT 96 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~~~~i~yv~Q~~~l~~~lT 96 (661)
+.+|+|+||++++||++||+||||||||||+++|+|++++. +|+|.++|.+... .++.+||++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 56999999999999999999999999999999999999874 8999999987531 2456999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
|+||+.+.+.++ +.+..+.+++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876653 23445556788999999999988888875 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 177 LDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++..
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999988899999999996 5889999999999999999999876643
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=382.02 Aligned_cols=215 Identities=25% Similarity=0.382 Sum_probs=193.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. ..
T Consensus 19 ~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 19 LLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPY 89 (377)
T ss_pred eEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 4889999998742 46999999999999999999999999999999999999874 899999998753 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|++.+||++||.||+.|..+.+ ..++.+.+++++++++.+||.+..++.+. +|||||||||+||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~QRVaLA 161 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALA 161 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHH
Confidence 567999999999999999999999987643 24566777889999999999998888875 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++|||+ .++..++|++++|++|+++..|++++.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~ 237 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEI 237 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHH
Confidence 9999999999999999999999999999999998764 89999999996 589999999999999999999997654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=349.69 Aligned_cols=218 Identities=24% Similarity=0.453 Sum_probs=194.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|..+||..+++ ++++++|||+++++||+++++|||||||||.+.++.|+.+++ +|+|.+||.+...
T Consensus 4 ~L~a~~l~K~y~------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 4 TLVAENLAKSYK------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMH 74 (243)
T ss_pred EEEehhhhHhhC------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChH
Confidence 567778877765 378999999999999999999999999999999999999985 9999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+..+||+||++..|..|||+||+......+.. ...+.+.+.+++++|+++.|.+++|++.. .||||||||+
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~ 148 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRV 148 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHH
Confidence 245799999999999999999999988877631 22334566678999999999999999875 4999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
.|||||+.+|+.++||||++|.||-+..+|.++++.|++.|..|++|-|+.. |...+|||.+++.+|++.++|++++..
T Consensus 149 EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 149 EIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHh
Confidence 9999999999999999999999999999999999999999999999999974 899999999999999999999987654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=370.15 Aligned_cols=231 Identities=26% Similarity=0.357 Sum_probs=194.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
|+++|+++.++.. ....+.+|+|||+++++||+++|+||||||||||+++|+|++++. +|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~-~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPN-SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCC-CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 7899999998631 111246999999999999999999999999999999999999874 899999998742
Q ss_pred ---cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHH
Q 045930 77 ---LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgG 150 (661)
..++.+|||+|++ .+++ .||.|++.|..... +.++++.++++.++++.+||. +..++.+ +.||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgG 148 (288)
T PRK13643 78 EIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----FELSGG 148 (288)
T ss_pred cHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----ccCCHH
Confidence 1245799999986 4555 59999999876432 245666778899999999996 4667665 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||+|++|++|++++.|+
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999987899999999997 57889999999999999999999
Q ss_pred CCChh---HHHHhcCCCCCC
Q 045930 231 AKSAP---TFFAEAGFPCPT 247 (661)
Q Consensus 231 ~~~~~---~~f~~~g~~~~~ 247 (661)
+++.. +.+...|+.+|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 228 PSDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHHcCHHHHHHcCCCCCh
Confidence 87643 344556776654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=353.72 Aligned_cols=209 Identities=28% Similarity=0.497 Sum_probs=183.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-cccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~~~~~ 81 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++.. ..++.
T Consensus 1 l~~~~l~~~~~------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFG------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEEC------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCchhHHHHcc
Confidence 46889998874 24699999999999999999999999999999999999887 4899999998643 22457
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|++.+++.+||+||+.+....+ ..+..+.+++++++++.+||++..++.++ +||||||||++||++|
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al 143 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKVQFIAAV 143 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHHHHHHHH
Confidence 999999999999999999999876543 22344556778999999999988887764 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999987789999999996 5788899999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=359.36 Aligned_cols=217 Identities=28% Similarity=0.430 Sum_probs=187.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +...+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 2 i~~~~l~~~~~~--~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGD--TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccC--CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHH
Confidence 788999998753 10113799999999999999999999999999999999999987 48999999987431
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+||.+..++.+. .||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 148 (233)
T cd03258 77 LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPA-----QLSGGQKQR 148 (233)
T ss_pred HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChh-----hCCHHHHHH
Confidence 1357999999999999999999999875533 23344456678999999999988888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|++++.|+.++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 89999999996 57889999999999999999987543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=354.42 Aligned_cols=213 Identities=30% Similarity=0.492 Sum_probs=185.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++. ....+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++... .
T Consensus 2 l~~~~v~~~~~~--~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRD--VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCC--CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHH
Confidence 688999998753 111126999999999999999999999999999999999998874 8999999987531 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..++.++ .||||||||++||
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 148 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIA 148 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHH
Confidence 457999999999999999999998865442 23345566788999999999988888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999987799999999997 5788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=368.53 Aligned_cols=220 Identities=25% Similarity=0.330 Sum_probs=188.1
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.++++|+++.++... +..+++|+|||+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++..
T Consensus 1 ~~l~~~~l~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 1 MDITFQKVEHRYQYKT-PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKK 76 (290)
T ss_pred CEEEEEEEEEEECCCC-cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 4689999999985311 11256999999999999999999999999999999999999874 899999998652
Q ss_pred -----cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 77 -----LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
..++.+||++|++ .++ ..||+||+.|..... ..+.++.+++++++++.+||. +..++.++ .||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPF-----ELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcc-----cCC
Confidence 1135699999986 455 469999999875432 345566667899999999997 56777664 699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++ +++.++||++++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 99999999996 57889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 227 ~g~~~~~ 233 (290)
T PRK13634 227 QGTPREI 233 (290)
T ss_pred ECCHHHH
Confidence 9987654
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=354.62 Aligned_cols=214 Identities=31% Similarity=0.513 Sum_probs=186.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
|+++|+++.++. + .+++|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~---~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKK---G-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCC---C-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccchHHH
Confidence 478899988742 1 25699999999999999999999999999999999999887 48999999987431 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ .||||||||++||
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 145 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLA 145 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHH
Confidence 456999999999999999999999876543 23344456678999999999888888765 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 146 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999999999999999999976 59999999997 47888999999999999999987654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=356.41 Aligned_cols=214 Identities=28% Similarity=0.386 Sum_probs=183.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCceeeEEEECCeeccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-----SGNVVMTGNVLLNGKKRRL 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~i~~~g~~~~~ 77 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhh
Confidence 468899988742 46999999999999999999999999999999999998 66 48999999986421
Q ss_pred -------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH
Q 045930 78 -------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 -------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.++ .+||+||+.+....+. .....+.+++++++++.+||.+..++.+. +++||||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG 145 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGG 145 (227)
T ss_pred cchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHH
Confidence 235799999999888 7999999998754321 11223345678899999999887776531 2469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++ .++.++||++++|++|++++.|+
T Consensus 146 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999999887 9999999997 57889999999999999999998
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=354.52 Aligned_cols=208 Identities=28% Similarity=0.438 Sum_probs=178.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. ....+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~--~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGG--GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecC--CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEehhhcchhH
Confidence 468999988752 11115699999999999999999999999999999999999987 48999999986421
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+||++..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 147 (218)
T cd03255 76 LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPS-----ELSGGQQQ 147 (218)
T ss_pred HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChh-----hcCHHHHH
Confidence 1356999999999999999999999876543 22334455678999999999988888764 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .||++++|++|++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 148 RVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999999999999999987 5899999999974 565 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=369.41 Aligned_cols=221 Identities=23% Similarity=0.328 Sum_probs=188.7
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.|+++|+++.++... .....+|+|||+++++||++||+||||||||||+++|+|.+++. +|+|.++|++..
T Consensus 1 m~i~~~~l~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 1 MQIKVKNIVKIFNKKL-PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKK 76 (305)
T ss_pred CEEEEEEEEEEECCCC-CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccc
Confidence 5689999999986311 11246999999999999999999999999999999999999874 899999876421
Q ss_pred -------------------------cccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC
Q 045930 77 -------------------------LDYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130 (661)
Q Consensus 77 -------------------------~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg 130 (661)
..++.+|||+|++ ..+...||+||+.|..... +.++++.+++++++++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~g 153 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVG 153 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcC
Confidence 1145699999985 2334579999999876532 3456677788999999999
Q ss_pred CC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 045930 131 LE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209 (661)
Q Consensus 131 L~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~ 209 (661)
|. +..++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ ++
T Consensus 154 L~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~ 227 (305)
T PRK13651 154 LDESYLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DN 227 (305)
T ss_pred CChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HH
Confidence 96 67787764 5999999999999999999999999999999999999999999999987799999999996 57
Q ss_pred HHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 210 VFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 210 i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+.++||++++|++|++++.|++++.
T Consensus 228 ~~~~adrv~vl~~G~i~~~g~~~~~ 252 (305)
T PRK13651 228 VLEWTKRTIFFKDGKIIKDGDTYDI 252 (305)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHH
Confidence 8899999999999999999987654
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=334.64 Aligned_cols=211 Identities=28% Similarity=0.463 Sum_probs=185.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
+..+++++.|.. .==..++++++||++||+||||||||||||+|+|...| .+|+|++||++.. ...
T Consensus 2 l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 2 LALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPAE 70 (231)
T ss_pred ccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCccc
Confidence 456778887753 11257889999999999999999999999999999988 4999999999753 234
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+-++.++||.++|..|||.+|+.++..-.+ .. .++.+++++.++..+||..+.+++.+ +|||||||||++||
T Consensus 71 RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALAR 142 (231)
T COG3840 71 RPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALAR 142 (231)
T ss_pred CChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHH
Confidence 679999999999999999999998754221 12 34557789999999999999999987 49999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|+++-+||+||||+|.|||.-+.+....+.+++++ +.|++++||+| +++..+.|+++++++|++.+.|+.++
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHH
Confidence 999999999999999999999999999999999875 89999999998 58999999999999999999998764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=358.13 Aligned_cols=217 Identities=29% Similarity=0.425 Sum_probs=183.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEeccccCHhH
Confidence 468899987742 15699999999999999999999999999999999999887 48999999986431
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRL-----PSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++.+||+||+.+...... ......++..++++++++.+||.+..++.++ +|||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 147 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD-----QLSG 147 (241)
T ss_pred HHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc-----cCCH
Confidence 13569999999999999999999987542110 0011123345678899999999888787764 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999865 89999999997 578889999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 227 ~~~~~ 231 (241)
T cd03256 227 GPPAE 231 (241)
T ss_pred cCHHH
Confidence 87654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=362.18 Aligned_cols=215 Identities=26% Similarity=0.351 Sum_probs=187.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 4789999998742 246999999999999999999999999999999999999874 8999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .++..||.||+.|..... ..++.+.+++++++++.+||.+..++.++ .||||||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv 147 (274)
T PRK13647 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRV 147 (274)
T ss_pred HHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHH
Confidence 1356999999963 445689999999865422 23455556778999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|++++
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 224 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSL 224 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999987799999999996 57889999999999999999998753
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=356.14 Aligned_cols=214 Identities=24% Similarity=0.398 Sum_probs=186.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFG------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEEC------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCChhH
Confidence 78999999874 25699999999999999999999999999999999999887 48999999987431
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+..... ......+..+++.++++.+||++..|+.+. .||||||||+
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv 145 (240)
T PRK09493 73 RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPS-----ELSGGQQQRV 145 (240)
T ss_pred HHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcChh-----hcCHHHHHHH
Confidence 1356999999999999999999998764211 123345556778999999999888888764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|+.++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999999999999999999999999999999999987799999999997 57888999999999999999987653
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=354.00 Aligned_cols=211 Identities=27% Similarity=0.447 Sum_probs=182.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCCCCHHH
Confidence 468899987742 4699999999999999999999999999999999999987 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+..... . ..+.+++++++++.+ ++.+..++.++ .||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~--~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv 141 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYAR---R--RAKRKARLERVYELFPRLKERRKQLAG-----TLSGGEQQML 141 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhc---C--chhHHHHHHHHHHHHHhhhhhhhCchh-----hCCHHHHHHH
Confidence 1356999999999999999999999875432 1 223345677888888 57777777764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999999987889999999996 57889999999999999999887543
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=350.08 Aligned_cols=205 Identities=30% Similarity=0.443 Sum_probs=179.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHH
Confidence 789999998741 24699999999999999999999999999999999999887 48999999986431
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.++ .||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 145 (214)
T TIGR02673 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPE-----QLSGGEQQR 145 (214)
T ss_pred HHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHH
Confidence 2357999999999999999999999875532 23344456778999999999887787764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999987799999999997 57888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=352.13 Aligned_cols=215 Identities=24% Similarity=0.347 Sum_probs=183.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ....+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~--~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQE--GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCC--CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCCHH
Confidence 4789999998753 11124699999999999999999999999999999999999887 48999999987431
Q ss_pred ----c-cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 78 ----D-YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 ----~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
. ++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.++ .||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~ 151 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPS-----ELSGGER 151 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 1 256999999999999999999999875432 22344556778999999999988887764 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.. +|++++|++|++++.|+.
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999999999976 589999999997 45555 589999999999988874
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-43 Score=349.98 Aligned_cols=206 Identities=27% Similarity=0.410 Sum_probs=180.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHH
Confidence 468899988742 24699999999999999999999999999999999999887 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||++..++.++ +||||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 144 (214)
T cd03292 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQR 144 (214)
T ss_pred HHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHH
Confidence 2356999999999999999999999876542 23345556778999999999988888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999987799999999997 578889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=351.93 Aligned_cols=221 Identities=43% Similarity=0.728 Sum_probs=186.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--ccc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDY 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~ 79 (661)
++.|+|+++.+++.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|.++++...+|+|.++|.+.. ..+
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhc
Confidence 478999999986411 1367999999999999999999999999999999999998721114899999998753 235
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE-AITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+.++|++|++.+++.+||+||+.+.+....+.....+....++++ .++.+++.+..++.++ .||||||||++||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 155 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK-----GISGGERRRVSIA 155 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc-----CcCHHHHHHHHHH
Confidence 679999999999999999999998765432222222233344565 8999999888887764 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++..++.++||++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999755799999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=356.03 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=186.9
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 1 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 1 MSIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CEEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccc
Confidence 67999999998752 4699999999999999999999999999999999999887 4899999998641
Q ss_pred -------cccCeEEEEecCCCCCCCCCHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 77 -------LDYGGVAYVTQENIMLGTLTVRETIAYS-AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 -------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+||.||+.+. .... +...++..++++++++.+||.+..++.++ .||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPL-----HLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 1135799999999999999999999753 2221 22344456678999999999888888764 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987799999999997 578889999999999999999
Q ss_pred cCCC
Q 045930 229 GEAK 232 (661)
Q Consensus 229 G~~~ 232 (661)
|+.+
T Consensus 223 ~~~~ 226 (242)
T PRK11124 223 GDAS 226 (242)
T ss_pred CCHH
Confidence 8754
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=349.30 Aligned_cols=205 Identities=28% Similarity=0.446 Sum_probs=180.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++.. ..+
T Consensus 1 l~~~~l~~~~~------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYG------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEEC------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCcccchHHHH
Confidence 46889998874 25699999999999999999999999999999999999887 4899999998642 124
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+....+ .. .+++++++++.+||.+..++.++ .|||||||||+||+
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~ 139 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIAL 139 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHH
Confidence 56999999999999999999998875432 11 13567889999999988888765 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 140 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 140 ALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999988899999999997 5788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=356.68 Aligned_cols=214 Identities=28% Similarity=0.466 Sum_probs=185.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEcCcCChHH
Confidence 468899988742 14699999999999999999999999999999999999887 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccccccCHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED--CADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+....+ ....++..+++.++++.+||.+ ..++.+ +.||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv 144 (242)
T cd03295 73 LRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRV 144 (242)
T ss_pred hhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHH
Confidence 2357999999999999999999999875442 2334555677899999999985 667765 46999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.+++|++++|++|++++.|++++
T Consensus 145 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 222 (242)
T cd03295 145 GVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDE 222 (242)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 89999999997 57889999999999999999887543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=357.57 Aligned_cols=215 Identities=26% Similarity=0.352 Sum_probs=186.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccccc
Confidence 4889999998752 4699999999999999999999999999999999999887 48999999976421
Q ss_pred ---------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 78 ---------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++.+||+||+.+...... ....++..++++++++.+||.+..|+.++ .||
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 146 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPR-----RLS 146 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChh-----hCC
Confidence 13569999999999999999999987543111 22344556678899999999888777664 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.
T Consensus 147 ~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988899999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 226 ~~~~~ 230 (250)
T PRK11264 226 GPAKA 230 (250)
T ss_pred CCHHH
Confidence 87543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=350.50 Aligned_cols=218 Identities=29% Similarity=0.466 Sum_probs=194.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
|+.++|+..+. .-++++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++..
T Consensus 5 L~v~~l~k~FG------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 5 LEVRGLSKRFG------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeccceeecC------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHH
Confidence 56788888765 367999999999999999999999999999999999999984 899999998753
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC--------CC-CCCHHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRL--------PS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
..+..++.-+|...+|+.|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+..|+ |
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----L 150 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-----L 150 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc-----C
Confidence 125678999999999999999999998865331 11 123566778899999999999999999986 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|+||||||.|||||+++|++|+||||.+||.+..+.++.+.|++++++ |.||+++.||. +.+..+||||++|+.|+++
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcCc
Confidence 999999999999999999999999999999999999999999999985 79999999996 6899999999999999999
Q ss_pred EecCCCChh
Q 045930 227 YFGEAKSAP 235 (661)
Q Consensus 227 ~~G~~~~~~ 235 (661)
+.|+++++.
T Consensus 230 AeG~P~eV~ 238 (250)
T COG0411 230 AEGTPEEVR 238 (250)
T ss_pred ccCCHHHHh
Confidence 999987654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=362.72 Aligned_cols=217 Identities=26% Similarity=0.413 Sum_probs=188.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. +..+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKE---DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCC---CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHH
Confidence 4789999998853 11245999999999999999999999999999999999999874 8999999987531
Q ss_pred -ccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++ ..++.+||+||+.+..... +.+.++..++++++++.+||++..|+.++ .||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv 149 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRV 149 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHH
Confidence 235799999997 4677889999999875432 34566667789999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++ ..||++++|++|+++..|++++.
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999875 999999999974 56 57999999999999999987654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=357.98 Aligned_cols=217 Identities=29% Similarity=0.396 Sum_probs=183.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCEEhhhCCHHH
Confidence 678999987741 25699999999999999999999999999999999999987 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC--C---CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRL--P---SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++.+||+||+.+...... . .....++.+++++++++.+||.+..++.+. .|||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 148 (243)
T TIGR02315 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD-----QLSG 148 (243)
T ss_pred HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCH
Confidence 13569999999999999999999987532100 0 011123345678899999999888887764 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999765 89999999997 578899999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR02315 228 GAPSE 232 (243)
T ss_pred CCHHH
Confidence 87654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=374.60 Aligned_cols=203 Identities=23% Similarity=0.349 Sum_probs=183.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---------ccCeEEEEecCCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---------DYGGVAYVTQENI 90 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---------~~~~i~yv~Q~~~ 90 (661)
.+.+|+|+||++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++... .++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 35699999999999999999999999999999999999988 49999999987531 1467999999999
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEE
Q 045930 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFL 170 (661)
Q Consensus 91 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllL 170 (661)
++|.+||+||+.+..... +.++++..+++.++++.+||++..+++++ .|||||||||+|||||+.+|++|||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999987643 34566777889999999999988888875 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||||+|||+.++..+.+.|+++.++ |+|||++||++ .++.++||+|++|++|+++..|++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999765 89999999996 578999999999999999999987654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=356.07 Aligned_cols=212 Identities=27% Similarity=0.391 Sum_probs=185.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++.......+
T Consensus 2 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY---QHGSITLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCCcE
Confidence 789999988742 5699999999999999999999999999999999999887 4899999998754333468
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.++ .||||||||++||++|+
T Consensus 73 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl~laral~ 144 (255)
T PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRVGIARALA 144 (255)
T ss_pred EEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865432 23345556778999999999888887764 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecCCC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAK 232 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~--~G~~v~~G~~~ 232 (661)
.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ .++..+||++++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999965 589999999997 57889999999998 59999888754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=364.19 Aligned_cols=220 Identities=24% Similarity=0.365 Sum_probs=188.3
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++.. ....+.+|+|||+++++||+++|+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~y~~~-~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 1 MTIRFDNVSYTYQKG-TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTK 76 (286)
T ss_pred CEEEEEEEEEEECCC-CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 679999999998531 111256999999999999999999999999999999999999874 8999999986421
Q ss_pred ------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 78 ------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
.++.+||++|++ .+++ .||.||+.+..... ..+.++..++++++++.+||. +..++.+. .||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPF-----QMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc-----cCC
Confidence 245799999986 4555 59999999875432 345566677899999999997 67777664 699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+++|++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 89999999996 57889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 227 ~g~~~~~ 233 (286)
T PRK13646 227 QTSPKEL 233 (286)
T ss_pred ECCHHHH
Confidence 9987653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=355.96 Aligned_cols=215 Identities=23% Similarity=0.467 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYK------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeC------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHH
Confidence 588999998874 25699999999999999999999999999999999999887 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||.||+.+....+ ...+.++.+++++++++.+|+.+..++.++ .||||||||+
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 146 (241)
T PRK10895 74 ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMGQ-----SLSGGERRRV 146 (241)
T ss_pred HHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcchh-----hCCHHHHHHH
Confidence 2356999999999999999999998765332 122344556778999999999887777664 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 223 (241)
T PRK10895 147 EIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTE 223 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHH
Confidence 999999999999999999999999999999999999987899999999997 57889999999999999999887654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=367.37 Aligned_cols=231 Identities=22% Similarity=0.337 Sum_probs=191.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++.. ....+.+|+|||+++++||++||+||||||||||+++|+|++++. +|+|.++|.+..
T Consensus 21 ~l~~~nl~~~y~~~-~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 21 ILRVKNLYCVFDEK-QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNN 96 (320)
T ss_pred eEEEEeEEEEeCCC-CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccc
Confidence 47899999988531 111246999999999999999999999999999999999999874 899999997532
Q ss_pred ----------------cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 045930 77 ----------------LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADR 137 (661)
Q Consensus 77 ----------------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~ 137 (661)
..++.++||+|++ .+++ .||+||+.+..... ..+.++..++++++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 1145799999986 4665 49999998875422 234566667889999999996 56776
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++
T Consensus 173 ~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri 246 (320)
T PRK13631 173 SP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEV 246 (320)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEE
Confidence 65 46999999999999999999999999999999999999999999999987899999999996 4688999999
Q ss_pred EEEeCCeEEEecCCCChh---HHHHhcCCCCC
Q 045930 218 FLLSGGETVYFGEAKSAP---TFFAEAGFPCP 246 (661)
Q Consensus 218 ~lL~~G~~v~~G~~~~~~---~~f~~~g~~~~ 246 (661)
++|++|++++.|++++.. +.+...|...|
T Consensus 247 ~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999876542 23444555544
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=360.63 Aligned_cols=215 Identities=23% Similarity=0.405 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 7 LVDMRGVSFTRG------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEILFDGENIPAMSRS 77 (269)
T ss_pred eEEEeCeEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccChh
Confidence 478999998774 25699999999999999999999999999999999999987 48999999986421
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++|++|++.+++.+||.||+.+...... ....++.++++.++++.+||.+..++.++ .|||||||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~q 150 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----ELSGGMAR 150 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHH
Confidence 13569999999999999999999988643211 12344455678889999999988888775 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++
T Consensus 151 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (269)
T PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQ 229 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 89999999996 5788999999999999999998865
Q ss_pred C
Q 045930 233 S 233 (661)
Q Consensus 233 ~ 233 (661)
+
T Consensus 230 ~ 230 (269)
T PRK11831 230 A 230 (269)
T ss_pred H
Confidence 4
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=378.19 Aligned_cols=218 Identities=26% Similarity=0.428 Sum_probs=190.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|++++ .+|+|.++|++...
T Consensus 3 ~L~~~nls~~y~------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p---~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFG------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP---TAGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEEC------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEcCcCCHH
Confidence 578999999875 25799999999999999999999999999999999999987 48999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.+|||+|++.+++.+||+||+.+........ ....++.+++++++++.+||.+..|+.+. +||||||||+
T Consensus 74 ~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGerQRv 148 (402)
T PRK09536 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSGGERQRV 148 (402)
T ss_pred HHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHH
Confidence 2467999999999999999999998864321100 11123445678999999999999988775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
.|||+|+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999988899999999996 588999999999999999999998764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=362.87 Aligned_cols=220 Identities=24% Similarity=0.353 Sum_probs=188.0
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++.. ....+.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 1 ~~i~~~~l~~~~~~~-~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 1 MSIKFENVDYIYSPG-TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETG 76 (287)
T ss_pred CEEEEEEEEEEcCCC-CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccc
Confidence 568999999988521 111256999999999999999999999999999999999999884 8999999986421
Q ss_pred ------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 78 ------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||. +..++.++ .||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF-----ELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc-----cCC
Confidence 135699999996 344 579999998865432 234566667899999999997 67788775 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987799999999996 578899999999999999999
Q ss_pred cCCCCh
Q 045930 229 GEAKSA 234 (661)
Q Consensus 229 G~~~~~ 234 (661)
|++++.
T Consensus 227 g~~~~~ 232 (287)
T PRK13641 227 ASPKEI 232 (287)
T ss_pred CCHHHH
Confidence 986653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=347.95 Aligned_cols=207 Identities=29% Similarity=0.502 Sum_probs=180.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++. +.+|+|+|+++++| +++|+||||||||||+++|+|++++ .+|+|.++|.+... .
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCCccccchHHH
Confidence 468899988742 46999999999999 9999999999999999999999887 48999999976431 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ .||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 142 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIA 142 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999876543 22344456678999999999988888764 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|++++.|
T Consensus 143 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 59999999997 5688899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=348.43 Aligned_cols=207 Identities=25% Similarity=0.380 Sum_probs=181.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccCChhH
Confidence 788999998731 25699999999999999999999999999999999999987 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.++ .||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 145 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPI-----QLSGGEQQR 145 (222)
T ss_pred HHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCch-----hCCHHHHHH
Confidence 2357999999998889999999999875432 23445556678899999999887787764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ +++..++|++++|++|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 146 VGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999999999987789999999997 5788899999999999975
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=359.90 Aligned_cols=220 Identities=25% Similarity=0.312 Sum_probs=186.2
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.|+++|+++.++.. ....+++|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 1 MGINLQNVSYTYQAG-TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDTLITSTSK 76 (280)
T ss_pred CeEEEEEEEEEcCCC-CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccccc
Confidence 679999999988531 11124699999999999999999999999999999999999887 48999999986421
Q ss_pred ------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 78 ------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++ .+++ .||+||+.+..... ..+.++.+++++++++.+||. +..++.++ .||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPF-----ELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc-----cCC
Confidence 135699999996 4554 69999998865432 234455566788999999997 45677664 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++.+++|++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999987799999999997 578899999999999999999
Q ss_pred cCCCCh
Q 045930 229 GEAKSA 234 (661)
Q Consensus 229 G~~~~~ 234 (661)
|++++.
T Consensus 227 g~~~~~ 232 (280)
T PRK13649 227 GKPKDI 232 (280)
T ss_pred CCHHHH
Confidence 987654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=351.42 Aligned_cols=212 Identities=29% Similarity=0.473 Sum_probs=183.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYG------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhh
Confidence 67899998874 256999999999999999999999999999999999999874 8999999986421 1
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
.+.++|++|++.+++.+||+||+.+....+ ..+.++..+.++++++.+||++..++.++ .||||||||++||
T Consensus 73 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la 144 (236)
T TIGR03864 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIA 144 (236)
T ss_pred hhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHH
Confidence 247999999998889999999998865442 23344455678899999999988888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. .+|++++|++|++++.|++++
T Consensus 145 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 145 RALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999999999985 5899999999974 565 499999999999999887543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=356.30 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+....++.
T Consensus 12 ~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 12 PLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGTAPLAEARED 82 (257)
T ss_pred cEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEHHHhhCc
Confidence 4789999998742 5699999999999999999999999999999999999987 489999999875434567
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|++.+++.+||+||+.+... . ..+++++++++.+||.+..++.++ .||||||||++||++|
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqrl~laraL 148 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPA-----ALSGGQKQRVALARAL 148 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHH
Confidence 9999999999999999999987521 0 124568899999999988887764 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+.+
T Consensus 149 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999966 489999999997 4788899999999999999988754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=346.89 Aligned_cols=209 Identities=25% Similarity=0.402 Sum_probs=178.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. ....+++|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++...
T Consensus 2 l~~~~v~~~~~~--~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQE--GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccC--CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcCHhH
Confidence 678999998753 11125699999999999999999999999999999999999887 48999999986421
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++.++ .|||||||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 148 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----ELSGGERQ 148 (221)
T ss_pred HHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHH
Confidence 1256999999999999999999999865432 12334445678899999999888888764 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++ +.+|++++|++|+++
T Consensus 149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999999999875 899999999974 55 458999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=353.79 Aligned_cols=215 Identities=27% Similarity=0.399 Sum_probs=183.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~--- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 688999998742 45999999999999999999999999999999999998752 1128999999986431
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccCH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++ +||+||+.+....+. ..+.++..++++++++.+||. +..++.++ .|||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSg 147 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSAL-----GLSG 147 (247)
T ss_pred chHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc-----cCCH
Confidence 1457999999998888 999999998765431 123455567789999999997 66666654 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +|||+++|++ .++.+++|++++|++|++++.|
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 148 GQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999999874 8999999997 5788999999999999999998
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
++++
T Consensus 226 ~~~~ 229 (247)
T TIGR00972 226 PTEQ 229 (247)
T ss_pred CHHH
Confidence 7653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=345.11 Aligned_cols=221 Identities=26% Similarity=0.447 Sum_probs=205.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-cc
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DY 79 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~ 79 (661)
|.|++++++.++. ++.+++|+||.++||||.+++|||||||||.+++|.|++++ .+|+|.++|.+.+. .+
T Consensus 1 ~~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~---~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 1 MALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP---TEGEITWNGGPLSQEIK 71 (300)
T ss_pred CceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc---cCceEEEcCcchhhhhh
Confidence 5789999998775 37799999999999999999999999999999999999998 49999999998653 46
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
.+|||.|.+..|++.+||.|.|.|.|.++ ++++++.+++++.+|+.+++......++. +||.|++|++.+..
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHHHHHHH
Confidence 78999999999999999999999999986 78899999999999999999998888874 69999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHH
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFA 239 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~ 239 (661)
+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+|+|.. +.+.++||++++|++|+.|.+|+.+++..-|.
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999996 68999999999999999999999888776543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=340.96 Aligned_cols=215 Identities=27% Similarity=0.431 Sum_probs=187.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+.+||+..|.. .++|+|||+++++||+++|+|||||||||||++|+|..++. +|+|.++|++...
T Consensus 3 mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 3 MLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPH 73 (237)
T ss_pred ceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHH
Confidence 5789999987752 67999999999999999999999999999999999999873 8999999998532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.+..++||||...+||.|||+|||..++..+.. ++..+..++++.+.+ .|.+.++++.|+ |||||||.
T Consensus 74 ~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQM 144 (237)
T COG0410 74 ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQM 144 (237)
T ss_pred HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccC-----CChHHHHH
Confidence 256799999999999999999999988654311 122222377888888 578889998885 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++.++. ....+++||.++|.+|+++++|+.++
T Consensus 145 LAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~Griv~~G~~~e 223 (237)
T COG0410 145 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENGRIVLSGTAAE 223 (237)
T ss_pred HHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999976 78999998884 67899999999999999999999765
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
..
T Consensus 224 L~ 225 (237)
T COG0410 224 LL 225 (237)
T ss_pred Hh
Confidence 43
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=366.90 Aligned_cols=223 Identities=25% Similarity=0.358 Sum_probs=190.5
Q ss_pred eEEEEEEEEEeecCCc-------ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee
Q 045930 2 YLVWEEVTVVVPNFGS-------GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~ 74 (661)
.|+++||++.++.... +....+++|||+++++||+++|+|+||||||||+++|+|++++ .+|+|.++|++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~G~~ 84 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLGKD 84 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEECCEE
Confidence 4789999999863111 1125699999999999999999999999999999999999987 38999999987
Q ss_pred ccc--------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 045930 75 RRL--------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWH 143 (661)
Q Consensus 75 ~~~--------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~ 143 (661)
... .++.++||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +..++.+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p---- 159 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYP---- 159 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCc----
Confidence 421 245799999997 688999999999987653211 245667778899999999994 4667766
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
++|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.++ |.|||++|||+ ..+.+++|+|++|.+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~ 237 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYL 237 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999875 99999999996 578889999999999
Q ss_pred CeEEEecCCCCh
Q 045930 223 GETVYFGEAKSA 234 (661)
Q Consensus 223 G~~v~~G~~~~~ 234 (661)
|++++.|+.++.
T Consensus 238 G~ive~g~~~~i 249 (331)
T PRK15079 238 GHAVELGTYDEV 249 (331)
T ss_pred CEEEEEcCHHHH
Confidence 999999986543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=346.09 Aligned_cols=206 Identities=26% Similarity=0.396 Sum_probs=179.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccchhH
Confidence 468899998752 4699999999999999999999999999999999999887 48999999986521
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+..... .....++.+++++++++.+|+.+..++.+. .||||||||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 144 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYPA-----QLSGGQQQRV 144 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCcc-----ccCHHHHHHH
Confidence 2457999999999999999999998864311 123344556678999999999888888764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++
T Consensus 145 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999988899999999997 578899999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=359.42 Aligned_cols=228 Identities=27% Similarity=0.424 Sum_probs=192.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+..
T Consensus 5 ~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCEECCCCcch
Confidence 4789999998842 25699999999999999999999999999999999999987 4899999998752
Q ss_pred --cccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 --LDYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.++|++|++. .+...||+||+.+..... +.+.++.+++++++++.+||.+..|+.++ .|||||||
T Consensus 77 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~q 148 (283)
T PRK13636 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKK 148 (283)
T ss_pred HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cCCHHHHH
Confidence 12357999999973 334579999998865432 23455666789999999999988888775 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 89999999996 5688899999999999999999987
Q ss_pred ChhH---HHHhcCCCCC
Q 045930 233 SAPT---FFAEAGFPCP 246 (661)
Q Consensus 233 ~~~~---~f~~~g~~~~ 246 (661)
+... .+...+.++|
T Consensus 228 ~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 228 EVFAEKEMLRKVNLRLP 244 (283)
T ss_pred HHhcCHHHHHHcCCCCC
Confidence 6432 3334455443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=360.55 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=177.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---------ccCeEEEEecCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---------DYGGVAYVTQENIM 91 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---------~~~~i~yv~Q~~~l 91 (661)
+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++... .++.++|++|++.+
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 56899999999999999999999999999999999999874 8999999986421 12569999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEe
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLD 171 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLD 171 (661)
++.+||+||+.+....+ .....+..++++++++.+||.+..++.++ .||||||||++||+||+.+|++||||
T Consensus 114 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999875432 22344455678999999999988888875 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 172 EPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 172 EPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999765 89999999996 57889999999999999999987653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=352.18 Aligned_cols=213 Identities=23% Similarity=0.381 Sum_probs=183.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYG------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeC------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEecCCCCHH
Confidence 478999999874 25699999999999999999999999999999999999987 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||.||+.+..... ..++.++.++++++.+ ++.+..++.+ +.||||||||
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qr 145 (237)
T PRK11614 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMSGGEQQM 145 (237)
T ss_pred HHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCCHHHHHH
Confidence 2356999999999999999999998864321 1233345677788888 5777666655 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 146 l~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999988899999999996 578999999999999999999986543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=345.73 Aligned_cols=201 Identities=30% Similarity=0.429 Sum_probs=173.2
Q ss_pred EEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccCeE
Q 045930 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYGGV 82 (661)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~~i 82 (661)
++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+.. ..++.+
T Consensus 2 ~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEhhhHHhhcce
Confidence 5788887642 15699999999999999999999999999999999999887 4899999998742 224579
Q ss_pred EEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 83 AYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 83 ~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
+|++|++. .+..+||+||+.+..... . . .+++++++++.+||.+..++.++ +||||||||++||++|
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral 141 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAAL 141 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHH
Confidence 99999974 344679999998765321 1 1 12568899999999988888775 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999987899999999997 5788899999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=354.09 Aligned_cols=214 Identities=23% Similarity=0.366 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 5 KLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTINLVRDK 75 (257)
T ss_pred cEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEccccccc
Confidence 4789999998752 5699999999999999999999999999999999999887 4899999997642
Q ss_pred -------------cccCeEEEEecCCCCCCCCCHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccC
Q 045930 77 -------------LDYGGVAYVTQENIMLGTLTVRETIAYSAH-LRLPSNMNNEEITDVIEEAITEMGLEDCA-DRLIGN 141 (661)
Q Consensus 77 -------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~ 141 (661)
..++.++|++|++.+++.+||+||+.+... .. .....+.++++.++++.+||.+.. ++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 150 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQGKYP-- 150 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhhhCCc--
Confidence 113579999999999999999999987542 21 223455567789999999998753 6655
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 142 ~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|+
T Consensus 151 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~ 226 (257)
T PRK10619 151 ---VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLH 226 (257)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEE
Confidence 46999999999999999999999999999999999999999999999987899999999997 57888999999999
Q ss_pred CCeEEEecCCCC
Q 045930 222 GGETVYFGEAKS 233 (661)
Q Consensus 222 ~G~~v~~G~~~~ 233 (661)
+|++++.|+.++
T Consensus 227 ~G~i~~~~~~~~ 238 (257)
T PRK10619 227 QGKIEEEGAPEQ 238 (257)
T ss_pred CCEEEEeCCHHH
Confidence 999999987653
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=355.47 Aligned_cols=225 Identities=26% Similarity=0.387 Sum_probs=193.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-CCceeeEEEECCeec-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS-G-NVVMTGNVLLNGKKR----- 75 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~-~~~~~G~i~~~g~~~----- 75 (661)
|+.+||++.+.... ...++++||||++++||++||+|.|||||||+.++|.|+++ + ....+|+|.++|++.
T Consensus 2 L~v~nL~v~f~~~~--g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDA--GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCC--ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 68999999997622 24679999999999999999999999999999999999997 4 345679999999852
Q ss_pred ----ccccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 76 ----RLDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNM-NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 76 ----~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
+.+.+.|+||+|++ .|.|.+||.+.+.-..+.+. .. +++|.++++.++|+.+||.+..... +.++.+||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~--~~YPhelS 155 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRL--KSYPHELS 155 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHH--hhCCcccC
Confidence 12346799999996 68999999999988876542 23 4667788999999999998643221 22456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|++|||. ..+.++||||.||..|++|+
T Consensus 156 GGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred CcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEE
Confidence 9999999999999999999999999999999999999999999987 499999999996 58999999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 235 ~g~~~~i 241 (316)
T COG0444 235 EGPVEEI 241 (316)
T ss_pred eCCHHHH
Confidence 9998653
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=356.77 Aligned_cols=214 Identities=28% Similarity=0.393 Sum_probs=184.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQ------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCH
Confidence 78999999874 246999999999999999999999999999999999999874 8999999987421
Q ss_pred --ccCeEEEEecCCCC-CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIM-LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l-~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.. +...|+.||+.+..... ....++..++++++++.+||.+..++.++ .||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 144 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQ-----CLSHGQKKR 144 (271)
T ss_pred HHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCch-----hCCHHHHHH
Confidence 13569999999753 34568999998865432 23445556678899999999888888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|++++.
T Consensus 145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999997 578899999999999999999987653
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=357.42 Aligned_cols=215 Identities=26% Similarity=0.369 Sum_probs=187.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++...
T Consensus 6 l~~~~l~~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 6 IRVEHISFRYPD----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWD 78 (279)
T ss_pred EEEEEEEEEeCC----CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHH
Confidence 889999998752 1356999999999999999999999999999999999999884 8999999987531
Q ss_pred ccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 DYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 ~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++ .+++..||.||+.+..... ..+.++.+++++++++.+||.+..++.++ .||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~ 150 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVA 150 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHH
Confidence 235799999997 3677789999999875432 23455666789999999999988888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++. .||++++|++|++++.|+.++.
T Consensus 151 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13635 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEI 227 (279)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999876 899999999974 565 5999999999999999987654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=344.61 Aligned_cols=205 Identities=33% Similarity=0.485 Sum_probs=175.4
Q ss_pred EEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----c
Q 045930 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----D 78 (661)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~ 78 (661)
+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+... .
T Consensus 1 ~~~~l~~~~~~----~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~ 73 (211)
T cd03225 1 ELKNLSFSYPD----GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTKLSLKEL 73 (211)
T ss_pred CceeEEEecCC----CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcccCCHHHH
Confidence 36788887742 125699999999999999999999999999999999999887 48999999986431 2
Q ss_pred cCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 79 YGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 79 ~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
++.++|++|++. .++.+||+||+.+....+ .....+.+++++++++.+||.+..++.++ .||||||||++|
T Consensus 74 ~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~l 145 (211)
T cd03225 74 RRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAI 145 (211)
T ss_pred HhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHH
Confidence 357999999974 466789999998865432 22344455678899999999888888775 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999987799999999996 57888999999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=347.24 Aligned_cols=209 Identities=30% Similarity=0.476 Sum_probs=175.2
Q ss_pred EEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEE
Q 045930 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAY 84 (661)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~y 84 (661)
++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++....++.++|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEE
Confidence 5788887742 46999999999999999999999999999999999998874 89999999865333467999
Q ss_pred EecCCCCC--CCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 85 VTQENIML--GTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 85 v~Q~~~l~--~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++.+. ..+||+||+.+....... .....++.+++++++++.+||.+..++.++ .||||||||++||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al 147 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARAL 147 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHH
Confidence 99998763 347999999886432110 001123345678999999999888888765 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999987899999999996 5788999999999886 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=346.69 Aligned_cols=214 Identities=27% Similarity=0.411 Sum_probs=177.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ......+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|++...
T Consensus 2 l~~~~v~~~~~~--~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPT--GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccC--CCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccchhh
Confidence 678999998753 11113699999999999999999999999999999999999887 48999999986421
Q ss_pred ---ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCccccccCHH
Q 045930 78 ---DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDV-IEEAITEMGLE-DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ---~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++ .+++.+||+||+.+......+ ...++..+. ++++++.+++. +..++.++ .||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G 149 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPH-----ELSGG 149 (228)
T ss_pred HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCch-----hcCHH
Confidence 235799999998 467789999999887543211 112222222 36889999995 56777664 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999999999876 89999999997 5788899999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=350.61 Aligned_cols=216 Identities=28% Similarity=0.450 Sum_probs=185.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHH
Confidence 3789999988742 46999999999999999999999999999999999998874 8999999986431
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP--S---NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.++ .||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 147 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG-----LLSHG 147 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 134699999999999999999999986432100 0 01223445678999999999988888775 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCC
Confidence 99999999999999999999999999999999999999999976 79999999996 57889999999999999999887
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
.++
T Consensus 226 ~~~ 228 (242)
T TIGR03411 226 LDQ 228 (242)
T ss_pred HHH
Confidence 543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=350.18 Aligned_cols=217 Identities=26% Similarity=0.372 Sum_probs=182.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeeccc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~--- 77 (661)
|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVE------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEEC------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCH
Confidence 47899999874 256999999999999999999999999999999999995 44 48999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS----NMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~----~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSg 149 (661)
.+..++|++|++.+++.+||+|++.+........ ..+.++..++++++++.+||. +..++.++ .+|||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~ 147 (243)
T TIGR01978 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSG 147 (243)
T ss_pred HHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCH
Confidence 1234899999999999999999998865432110 112334456789999999997 46676653 14999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~~ 228 (661)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987899999999997 467777 899999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 227 g~~~~ 231 (243)
T TIGR01978 227 GDVEL 231 (243)
T ss_pred cCHHH
Confidence 98753
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=353.22 Aligned_cols=215 Identities=30% Similarity=0.428 Sum_probs=185.5
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
+.++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 1 AMLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSP 71 (258)
T ss_pred CeEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcccCCH
Confidence 35889999998752 5699999999999999999999999999999999999887 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.++ .||||||||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHH
Confidence 2356999999998888899999998864321 12233345678899999999988888775 5999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 156 SIALEIL------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 156 sIa~aL~------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
+||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++ .++.++||++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999998 5689999999996 578889999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 223 ~~~~~ 227 (258)
T PRK13548 223 GTPAE 227 (258)
T ss_pred CCHHH
Confidence 87654
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=353.03 Aligned_cols=217 Identities=23% Similarity=0.383 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFG------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEEC------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEECCCCCHH
Confidence 378999999874 25699999999999999999999999999999999999887 48999999987431
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-----------C-CCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-----------S-NMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-----------~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 143 (661)
.+..++|++|++.+++.+||+||+.+....... . .....+..++++++++.+||.+..++.++
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAG--- 152 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChh---
Confidence 134589999999999999999999986432110 0 00112334568889999999888888775
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++
T Consensus 153 --~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 153 --NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999999876 89999999996 578899999999999
Q ss_pred CeEEEecCCCC
Q 045930 223 GETVYFGEAKS 233 (661)
Q Consensus 223 G~~v~~G~~~~ 233 (661)
|++++.|++++
T Consensus 230 g~i~~~~~~~~ 240 (255)
T PRK11300 230 GTPLANGTPEE 240 (255)
T ss_pred CeEEecCCHHH
Confidence 99999887654
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=352.10 Aligned_cols=213 Identities=25% Similarity=0.341 Sum_probs=184.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~ 71 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQLYHMPGRN 71 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccccccc
Confidence 478999998752 4699999999999999999999999999999999999887 48999999976421
Q ss_pred -------------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 045930 78 -------------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144 (661)
Q Consensus 78 -------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 144 (661)
.++.++|++|++.+++.+||.||+.+..... .....++.++.++++++.+|+.+..++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 145 (252)
T TIGR03005 72 GPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPA---- 145 (252)
T ss_pred ccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChh----
Confidence 1457999999999999999999998854211 123344556678999999999888887664
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.+++|++++|++|
T Consensus 146 -~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 146 -QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKG 223 (252)
T ss_pred -hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999875 89999999997 5788999999999999
Q ss_pred eEEEecCCC
Q 045930 224 ETVYFGEAK 232 (661)
Q Consensus 224 ~~v~~G~~~ 232 (661)
++++.|+.+
T Consensus 224 ~i~~~g~~~ 232 (252)
T TIGR03005 224 RIVEQGKPD 232 (252)
T ss_pred EEEEeCCHH
Confidence 999988754
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=357.35 Aligned_cols=214 Identities=27% Similarity=0.360 Sum_probs=185.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|||+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECCccccHH
Confidence 788999998742 24599999999999999999999999999999999999887 48999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .+...||.||+.+..... ..+.++..++++++++.+||.+..++.++ .||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv 145 (274)
T PRK13644 74 GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCV 145 (274)
T ss_pred HHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHHHHHH
Confidence 1356999999975 366789999998875432 23455666778999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++ ..||++++|++|++++.|++++.
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999878999999999974 56 56999999999999999987653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=353.40 Aligned_cols=218 Identities=28% Similarity=0.436 Sum_probs=186.3
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 1 ~~l~~~~l~~~~~------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 1 MTLRTENLTVGYG------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSS 71 (255)
T ss_pred CEEEEEeEEEEEC------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEhHHCCH
Confidence 5789999999874 25699999999999999999999999999999999999887 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|+..+++.+||.||+.+....... .....++..++++++++.+||.+..++.++ .||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-----DLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHHHHHH
Confidence 235699999999888899999999875311000 011123345678899999999888888764 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|+.++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHH
Confidence 9999999999999999999999999999999999999987799999999997 57899999999999999999887654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=354.04 Aligned_cols=215 Identities=32% Similarity=0.482 Sum_probs=185.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|++...
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchH
Confidence 789999998742 246999999999999999999999999999999999999874 8999999987521
Q ss_pred --ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++. .+...||.||+.+..... ..+.++.++++.++++.+||++..++.++ .||||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qr 145 (275)
T PRK13639 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKR 145 (275)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHH
Confidence 1356999999963 333579999998764321 23455566778999999999988888775 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEV 224 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987799999999996 578889999999999999999987764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=354.56 Aligned_cols=216 Identities=31% Similarity=0.446 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHH
Confidence 4789999998742 24599999999999999999999999999999999999987 48999999986431
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .+...||.||+.+..... ..+.++.+++++++++.+||.+..++.++ .||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl 146 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRV 146 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHH
Confidence 2356999999973 344679999998765432 24455566788999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++.+.||++++|++|++++.|++++.
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999876 89999999997 578899999999999999999987654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=361.90 Aligned_cols=223 Identities=22% Similarity=0.303 Sum_probs=188.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-ceeeEEEECCeeccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV-VMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~i~~~g~~~~~--- 77 (661)
.|+++||++.++.. +....+|+||||++++||++||+|+||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 3 ~L~v~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDE--SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCC--CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 58999999998641 112569999999999999999999999999999999999986421 248999999987421
Q ss_pred ------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccccc
Q 045930 78 ------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED---CADRLIGNWHWRG 146 (661)
Q Consensus 78 ------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~ 146 (661)
.++.++||+|++ .+.|.+||.+++........ ....++.++++.++++.+||.+ ..++.+ ++
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p-----~~ 153 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVYP-----HQ 153 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCCc-----hh
Confidence 124699999998 58899999999877654321 2345666788999999999975 345544 56
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||||||+||+||+.+|++||+||||+|||+.++.++++.|++++++ |.|+|++|||. ..+.+++|+|++|++|++
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~i 232 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQV 232 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 99999999996 578889999999999999
Q ss_pred EEecCCCCh
Q 045930 226 VYFGEAKSA 234 (661)
Q Consensus 226 v~~G~~~~~ 234 (661)
++.|++++.
T Consensus 233 ve~g~~~~~ 241 (326)
T PRK11022 233 VETGKAHDI 241 (326)
T ss_pred EEECCHHHH
Confidence 999987654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=352.01 Aligned_cols=215 Identities=23% Similarity=0.362 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|++..
T Consensus 12 ~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 12 QIKVENLNLWYG------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eEEEeeeEEEeC------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 478899998764 2569999999999999999999999999999999999986410 14899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+....+ +.+.++.+++++++++.+|+. +..++.+ +.||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 156 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA-----LSLS 156 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-----hhCC
Confidence 12356999999998888 89999999875432 233445556788999999984 3455555 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 79999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 235 ~~~~~ 239 (258)
T PRK14268 235 GQTRQ 239 (258)
T ss_pred CCHHH
Confidence 88653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=356.57 Aligned_cols=220 Identities=24% Similarity=0.342 Sum_probs=186.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++.......+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP---SEGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeccccccH
Confidence 47899999998632111235699999999999999999999999999999999999987 48999999987531
Q ss_pred --ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++. .+...||.|++.|..... ..+..+.+++++++++.+||++..++.++ .||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qr 152 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLSGGQKQR 152 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHH
Confidence 2457999999974 233469999999875432 23455666789999999999998888875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999874 999999999974 5655 99999999999999998765
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
.
T Consensus 231 ~ 231 (280)
T PRK13633 231 I 231 (280)
T ss_pred H
Confidence 4
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=343.15 Aligned_cols=211 Identities=28% Similarity=0.385 Sum_probs=180.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~~--~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 6 IVEVHHLKKSVGQG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred eEEEeeeEEEccCC--CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCEEcccCCHH
Confidence 47899999887531 1113599999999999999999999999999999999999887 48999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
..+.++|++|++.+++.+||.||+.+....+ .....+.+++++++++.+||.+..++.++ .||||||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~ 152 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----QLSGGEQ 152 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHH
Confidence 1246999999999999999999998865432 22344556788999999999988888775 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++ +.+|++++|++|++++
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999765 899999999974 55 5599999999999874
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=361.99 Aligned_cols=226 Identities=24% Similarity=0.351 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++.. +....+|+||||++++||+++|+|+||||||||+++|+|++++....+|+|.++|++...
T Consensus 12 ~L~i~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 12 LLDVKDLRVTFSTP--DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred eEEEeCeEEEEecC--CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 47899999988641 123569999999999999999999999999999999999997632248999999987421
Q ss_pred -----ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH
Q 045930 78 -----DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 -----~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG 150 (661)
..+.++||+|++ .+.|.+||.+++.+...... ..+.++..+++.++++.+||.+..++ . +..+++||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG 165 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGG 165 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHH
Confidence 124799999998 68899999999987655431 24556667789999999999753322 1 1234679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||+||+||+.+|++||+||||+|||+.++..+++.|++++++ |.|+|++|||+ ..+.+++|++++|++|++++.|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 99999999996 5788899999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
++++.
T Consensus 245 ~~~~i 249 (330)
T PRK09473 245 NARDV 249 (330)
T ss_pred CHHHH
Confidence 87654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=369.68 Aligned_cols=220 Identities=25% Similarity=0.344 Sum_probs=189.7
Q ss_pred eEEEEEEEEEeecCCc------------------ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 045930 2 YLVWEEVTVVVPNFGS------------------GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV 63 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~------------------~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~ 63 (661)
.++++|++..+..... .....+|+|+||++++||+++|+|||||||||||++|+|++++.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-- 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-- 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--
Confidence 4788999887654210 01124899999999999999999999999999999999999874
Q ss_pred eeeEEEECCeeccc---------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 045930 64 MTGNVLLNGKKRRL---------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134 (661)
Q Consensus 64 ~~G~i~~~g~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 134 (661)
+|+|.++|++... .++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||++.
T Consensus 82 -sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 82 -RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENY 157 (400)
T ss_pred -CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChh
Confidence 8999999987421 1247999999999999999999999986543 23455566788999999999988
Q ss_pred ccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhh
Q 045930 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 135 ~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~ 213 (661)
.++.+. .|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~ 231 (400)
T PRK10070 158 AHSYPD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRI 231 (400)
T ss_pred hhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHh
Confidence 888775 5999999999999999999999999999999999999999999999976 489999999996 578899
Q ss_pred cCeEEEEeCCeEEEecCCCC
Q 045930 214 FDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 214 ~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|++++|++|+++..|++++
T Consensus 232 ~Dri~vL~~G~i~~~g~~~~ 251 (400)
T PRK10070 232 GDRIAIMQNGEVVQVGTPDE 251 (400)
T ss_pred CCEEEEEECCEEEecCCHHH
Confidence 99999999999999998654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=352.41 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|.++|.+...
T Consensus 4 ~l~~~nl~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 4 IIRVEKLAKTFN------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred EEEEeeEEEEeC------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 478899998874 2569999999999999999999999999999999999987642236999999976421
Q ss_pred ------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccccc
Q 045930 78 ------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-----NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 78 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
.++.++|++|++.+++.+||.||+.+......+. ....++.+++++++++.+||.+..|+.++ .
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 152 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS-----T 152 (262)
T ss_pred chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc-----c
Confidence 1346999999999999999999998764211000 01123445678999999999888888775 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ .++.++||++++|++|++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHV 231 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 89999999997 568899999999999999
Q ss_pred EEecCCC
Q 045930 226 VYFGEAK 232 (661)
Q Consensus 226 v~~G~~~ 232 (661)
++.|+++
T Consensus 232 ~~~g~~~ 238 (262)
T PRK09984 232 FYDGSSQ 238 (262)
T ss_pred EEeCCHH
Confidence 9998764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=360.62 Aligned_cols=222 Identities=22% Similarity=0.286 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeecCCc----ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc
Q 045930 2 YLVWEEVTVVVPNFGS----GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~ 77 (661)
.|+.+||++.++.... +..+.+|+|||++|++||++||+|+||||||||+++|+|++++ .+|+|.++|++...
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcCc
Confidence 4789999999863211 1125799999999999999999999999999999999999887 38999999987421
Q ss_pred --------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccc
Q 045930 78 --------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRG 146 (661)
Q Consensus 78 --------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 146 (661)
.++.++||+|++ .+.|.+||.+++........ ...+++.++++.++++.+||. +..++.+ ++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-----~~ 154 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP-----HM 154 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----cc
Confidence 245799999997 58899999999987655421 234566677899999999996 4667766 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||||||+||+||+.+|++||+||||+|||..++.++++.|+++.++ |.|||++|||. ..+.+++|+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 99999999996 578889999999999999
Q ss_pred EEecCCCCh
Q 045930 226 VYFGEAKSA 234 (661)
Q Consensus 226 v~~G~~~~~ 234 (661)
++.|+.++.
T Consensus 234 ve~g~~~~~ 242 (327)
T PRK11308 234 VEKGTKEQI 242 (327)
T ss_pred EEECCHHHH
Confidence 999987654
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=342.62 Aligned_cols=208 Identities=27% Similarity=0.433 Sum_probs=182.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~ 81 (661)
|+++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++|.+... ..+.
T Consensus 1 l~l~~v~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFG------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEEC------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccccc
Confidence 46889998774 25699999999999999999999999999999999999887 48999999986532 2357
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|++.+++.+||+||+.+....+ ... ++++.++++.+||++..|+.++ .||||||||++||+++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral 139 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGIAIAL 139 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHHHHHH
Confidence 999999999999999999998876432 111 2457889999999988888764 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +++.++||++++|++|++++.|+++
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 999999999999999999999999999999987799999999997 5788999999999999999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=352.05 Aligned_cols=221 Identities=24% Similarity=0.335 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeecCC---cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-
Q 045930 2 YLVWEEVTVVVPNFG---SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~---~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~- 77 (661)
.|+++|+++.++... .+.++.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcccc
Confidence 478999999885210 01135799999999999999999999999999999999999987 48999999986421
Q ss_pred -------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccccc
Q 045930 78 -------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGI 147 (661)
Q Consensus 78 -------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 147 (661)
.++.++|++|++ .+++.+||+||+.+..... .....++.+++++++++.+||. +..++.++ +|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~L 151 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPR-----QL 151 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChh-----hC
Confidence 135699999996 4677899999998765321 1223344556789999999996 66777664 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ ..+.+++|++++|++|+++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999875 89999999996 5788899999999999999
Q ss_pred EecCCCC
Q 045930 227 YFGEAKS 233 (661)
Q Consensus 227 ~~G~~~~ 233 (661)
+.|++++
T Consensus 231 ~~g~~~~ 237 (265)
T TIGR02769 231 EECDVAQ 237 (265)
T ss_pred EECCHHH
Confidence 9998654
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=340.30 Aligned_cols=207 Identities=29% Similarity=0.430 Sum_probs=177.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +. .|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+... .+
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCcCCHhH
Confidence 468899988742 22 399999999999999999999999999999999987 48999999987531 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+....+. .. .++.+++++++++.+||.+..++.+. +||||||||++||+
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~ 141 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALAR 141 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHH
Confidence 579999999999999999999987643211 11 22345678999999999988888764 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999864 89999999996 5788999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=349.08 Aligned_cols=218 Identities=25% Similarity=0.346 Sum_probs=183.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++. ...+|+|.++|++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 4 AIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred eEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 4789999998742 46999999999999999999999999999999999998752 124899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+||.||+.+....+. .....++..++++++++.+||.+ ..++.+ +.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 151 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYP-----SNLS 151 (253)
T ss_pred cChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccCh-----hhCC
Confidence 123579999999999999999999998754321 01133445567889999999853 344444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++..+||++++|++|++++.
T Consensus 152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 69999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 230 ~~~~~ 234 (253)
T PRK14267 230 GPTRK 234 (253)
T ss_pred CCHHH
Confidence 88653
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=348.05 Aligned_cols=218 Identities=26% Similarity=0.343 Sum_probs=183.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5789999998742 46999999999999999999999999999999999998631 124899999998642
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccCHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGISGG 150 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSgG 150 (661)
..++.++|++|++.+++.+||+||+.+....+.. ....++.++.++++++.+||.+ ..|+.+ .+||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG 150 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA-----GKLSGG 150 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc-----ccCCHH
Confidence 1245799999999889999999999987543211 1133455677899999999864 345554 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14247 151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGP 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECC
Confidence 99999999999999999999999999999999999999999965 89999999997 47889999999999999999988
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 229 ~~~ 231 (250)
T PRK14247 229 TRE 231 (250)
T ss_pred HHH
Confidence 654
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=366.81 Aligned_cols=202 Identities=27% Similarity=0.370 Sum_probs=180.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee----cc-c--------ccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK----RR-L--------DYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~----~~-~--------~~~~i~yv~Q 87 (661)
..+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|.++|++ .. . .++.++|++|
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p---~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV---SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 5689999999999999999999999999999999999987 48999999962 11 0 1257999999
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
++.+++.+||+||+.+....+ +.++++.+++++++++.+||++..|+.++ +||||||||++|||+|+.+|++
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999986543 24456667789999999999998888875 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||||||+|||+.++..+.+.|++++++ |+|||++|||+ +++.+++|++++|++|+++..|++++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei 252 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEI 252 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999875 99999999996 578999999999999999999987654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=350.29 Aligned_cols=216 Identities=22% Similarity=0.305 Sum_probs=185.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++...
T Consensus 7 ~l~i~~l~~~~~~----~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 7 IIVFKNVSFQYQS----DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAITDDNFE 79 (269)
T ss_pred eEEEEEEEEEcCC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHH
Confidence 4789999998752 124599999999999999999999999999999999999987 48999999987521
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. +++..||.+|+.+..... ....++..++++++++.+|+.+..|+.++ .||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl 151 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPN-----ALSGGQKQRV 151 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHH
Confidence 2457999999974 677889999998875432 23345556678899999999988887764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. +|++++|++|++++.|++++.
T Consensus 152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 899999999974 5655 999999999999999987654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=349.05 Aligned_cols=216 Identities=23% Similarity=0.312 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|++..
T Consensus 7 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 7 IIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred eEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 4789999998742 469999999999999999999999999999999999987520 13899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+....+. .....+.+++++++++.+++. +..++.+ +.||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 152 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-----LSLS 152 (254)
T ss_pred ccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc-----ccCC
Confidence 12457999999988875 899999998754321 123344567788999999873 4456655 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++ +++.+++|++++|++|+++..
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 79999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 231 g~~~~ 235 (254)
T PRK14273 231 SSTDE 235 (254)
T ss_pred CCHHH
Confidence 88654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=345.54 Aligned_cols=211 Identities=26% Similarity=0.405 Sum_probs=180.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHHH
Confidence 468999998752 4699999999999999999999999999999999999987 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-LEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+....+ ... .++.++++++.++ +.+..++.++ .||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv 140 (230)
T TIGR03410 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGG-----DLSGGQQQQL 140 (230)
T ss_pred HHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChh-----hCCHHHHHHH
Confidence 1356999999999999999999998875432 111 1234577777776 5666777664 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+.++.
T Consensus 141 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999999999999999875 89999999996 578889999999999999999986543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=352.48 Aligned_cols=219 Identities=24% Similarity=0.366 Sum_probs=187.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|.++|++...
T Consensus 5 ~l~i~~l~~~~~~----~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 5 IVEFKHVSFTYPD----SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred eEEEEEEEEEcCC----CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 4789999998752 12469999999999999999999999999999999999997741123999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.+||++|++. .++..||+||+.+....+ ..+.++.+++++++++.+||.+..++.+. .||||||||+
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~G~~qrv 152 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPA-----NLSGGQKQRV 152 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHH
Confidence 2357999999974 677889999998865432 34566667789999999999988888774 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++ ..||++++|++|++++.|++++.
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 899999999974 55 57999999999999999987654
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=344.47 Aligned_cols=213 Identities=27% Similarity=0.430 Sum_probs=186.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+... .+
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChhh
Confidence 468999988752 4699999999999999999999999999999999999887 48999999987532 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+|+.||+.+....+ .....+..+.++++++.+++.+..|+.++ .|||||+||++||+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~lar 143 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRVALAR 143 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHH
Confidence 57999999999999999999998875432 12334445678999999999888888765 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|++++.|+.++
T Consensus 144 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 217 (237)
T TIGR00968 144 ALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDE 217 (237)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999876 89999999997 57889999999999999999988654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=349.10 Aligned_cols=216 Identities=31% Similarity=0.452 Sum_probs=184.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcccCCHHH
Confidence 688999998742 5699999999999999999999999999999999999887 48999999986431
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAH-LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.+++.+||+||+.+... .+.......++..++++++++.+|+.+..++.++ .||||||||++
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 147 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGGERQRVH 147 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHH
Confidence 13469999999888888999999987531 1000011122334578899999999888888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|+++..|+.++
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPRE 223 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHH
Confidence 99999999999999999999999999999999999987789999999997 57889999999999999999987654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=342.93 Aligned_cols=212 Identities=29% Similarity=0.444 Sum_probs=186.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +.+++|+|+++++||+++|+||||||||||+++|+|.+++. .|+|.++|++... .+
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhh
Confidence 468999998752 46999999999999999999999999999999999999874 8999999986532 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+....+ ........++++++++.+||.+..++.+. .||||||||++||+
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~lar 143 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQRVAIAR 143 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 67999999999999999999998876543 22344456678899999999988888774 69999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+
T Consensus 144 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~ 216 (232)
T cd03300 144 ALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPE 216 (232)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999875 89999999997 5788999999999999999888643
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=350.71 Aligned_cols=218 Identities=25% Similarity=0.379 Sum_probs=185.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 7 ~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 7 RLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77 (265)
T ss_pred EEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEEEECCEEhhhCCHH
Confidence 5889999998752 4699999999999999999999999999999999999887 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+......+ .....+..+++++++++.+||.+..++.++ .||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv 152 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD-----TLSGGQRQRA 152 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCChHHHHHH
Confidence 135699999999999999999999875311100 001122334578899999999888888764 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 89999999997 579999999999999999999986543
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=351.59 Aligned_cols=215 Identities=26% Similarity=0.407 Sum_probs=185.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 7 ~l~~~nl~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 7 MIKVENVSFSYPN----SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGITISKENLK 79 (271)
T ss_pred EEEEEeEEEEcCC----CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEecCcCCHH
Confidence 4789999988742 135699999999999999999999999999999999999987 48999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.++ .||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl 151 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSGGQKQRV 151 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCHHHHHHH
Confidence 2457999999974 677789999999865432 23445556778999999999988888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|++. ++ ..||++++|++|+++..|+.++
T Consensus 152 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999876 599999999974 55 4799999999999999998654
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=344.06 Aligned_cols=199 Identities=32% Similarity=0.472 Sum_probs=173.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAY 103 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 103 (661)
|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++........+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 5799999999999999999999999999999999987 4899999998754322235899999999999999999988
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 104 SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
......+ ....++.+++++++++.+||++..++.++ +||||||||++||++|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6431111 23344556678999999999988888775 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 184 FVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 184 ~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
.+.+.|++++++ |+|||+++|++ +++.++||++++|++|+++..|+..
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 999999999875 89999999997 5788999999999999999888654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=351.05 Aligned_cols=217 Identities=31% Similarity=0.420 Sum_probs=184.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++. +.+|+|+||++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++..
T Consensus 11 ~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 11 TFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQPLESWSSK 81 (265)
T ss_pred eEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEehhhCCHH
Confidence 3789999988742 4699999999999999999999999999999999999887 4899999998642
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
..++.++|++|++.+++.+||.||+.+........ .....+.+++++++++.+||.+..++.++ .||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 156 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSGGERQRA 156 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCHHHHHHH
Confidence 12356999999988889999999998753211000 01122345678899999999888888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|+.++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999999999999875 89999999996 57889999999999999999987654
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=337.44 Aligned_cols=208 Identities=29% Similarity=0.439 Sum_probs=179.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
++++|+++.++. +++|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++.. ..+
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhc
Confidence 478999987641 467999999999999999999999999999999999874 899999998742 224
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+|+.||+.+...... . ...+.+++++++++.+||.+..++.+. .||||||||++||+
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~lar 141 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQRVALAR 141 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHHHHHHH
Confidence 579999999999999999999987643211 1 122235678899999999888888764 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|+++..|+
T Consensus 142 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 142 CLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999999875 89999999996 57788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=346.00 Aligned_cols=216 Identities=23% Similarity=0.321 Sum_probs=179.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 6 KMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred EEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 5789999998742 469999999999999999999999999999999999864 100148999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ .||+||+.+....+. ....++.+++++++++.+|+.+ ..++.+ +.||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 151 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESA-----LGLS 151 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc-----ccCC
Confidence 1457999999998888 499999998754321 1123344567889999999854 234444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|+++..
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 79999999997 578899999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 230 g~~~~ 234 (253)
T PRK14242 230 GPTEQ 234 (253)
T ss_pred CCHHH
Confidence 87543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=353.40 Aligned_cols=219 Identities=22% Similarity=0.310 Sum_probs=183.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++.. .+..+.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+..
T Consensus 6 ~l~i~nl~~~~~~~-~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 6 DIILDNVSYTYAKK-TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQTIVGDYAIPANLKK 81 (289)
T ss_pred eEEEEEEEEEeCCC-CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEccccccc
Confidence 47899999987531 00113599999999999999999999999999999999999987 4899999997642
Q ss_pred -----cccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 77 -----LDYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 -----~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++.++ .||
T Consensus 82 ~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----~LS 152 (289)
T PRK13645 82 IKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPF-----ELS 152 (289)
T ss_pred cccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChh-----hCC
Confidence 11356999999973 344 59999999865422 233445556788999999994 67777664 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 89999999996 57889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|+.++.
T Consensus 232 ~g~~~~~ 238 (289)
T PRK13645 232 IGSPFEI 238 (289)
T ss_pred eCCHHHH
Confidence 9886543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=345.02 Aligned_cols=210 Identities=26% Similarity=0.403 Sum_probs=180.7
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~l~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 2 NEIEFKEVSYSSF------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSILIDGVDIKTIDV 72 (241)
T ss_pred ceEEEEeEEEEeC------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcCh
Confidence 4789999998874 24699999999999999999999999999999999999887 4899999998642
Q ss_pred -cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHH
Q 045930 77 -LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqR 154 (661)
..++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+||. +..++.+ ..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHH
Confidence 12457999999998887 69999998754321 1 1134678899999996 5667655 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++.++||++++|++|+++..|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 99999999996 57888999999999999999887653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=341.83 Aligned_cols=210 Identities=27% Similarity=0.429 Sum_probs=181.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
++++|+++.++. +. .|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... ..
T Consensus 2 l~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHH------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEECC------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCeecCcCChhh
Confidence 789999998752 22 389999999999999999999999999999999987 48999999986432 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||.||+.+...... .. .++.+++++++++.+||++..|+.++ .||||||||++||+
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lar 142 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALAR 142 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHH
Confidence 569999999999999999999987532111 11 22345678999999999988888875 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+++.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.+++|++++|++|++++.|+.+
T Consensus 143 al~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~ 215 (232)
T PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTD 215 (232)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999765 89999999997 5788999999999999999998754
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=348.49 Aligned_cols=221 Identities=20% Similarity=0.319 Sum_probs=185.7
Q ss_pred eEEEEEEEEEeecCCc---ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-
Q 045930 2 YLVWEEVTVVVPNFGS---GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~---~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~- 77 (661)
.|+++||++.++.... ...+.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCC
Confidence 4789999998852100 1124699999999999999999999999999999999999987 48999999987531
Q ss_pred ----ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHH
Q 045930 78 ----DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++. +++.+||.|++.+...... .....+..++++++++.+||. +..++.+. .||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G 153 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPH-----MLAPG 153 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCch-----hcCHH
Confidence 1346999999974 6788999999988765431 223445566789999999994 56676654 69999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++..+||++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875 89999999997 5788899999999999999888
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
+.++
T Consensus 233 ~~~~ 236 (267)
T PRK15112 233 STAD 236 (267)
T ss_pred CHHH
Confidence 7543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=341.22 Aligned_cols=212 Identities=30% Similarity=0.480 Sum_probs=185.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
|+++|+++.+.. ++|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|.+... .+
T Consensus 1 l~~~~l~~~~~~-------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKE-------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCC-------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcCcCChhH
Confidence 467899887741 279999999999999999999999999999999999887 48999999987532 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||.||+.+..... ..+..+..+.+.++++.+||.+..++.+. .||||||||++||+
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~lar 142 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIAR 142 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHH
Confidence 67999999999999999999998865332 23345556678899999999988888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++
T Consensus 143 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 216 (235)
T cd03299 143 ALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEE 216 (235)
T ss_pred HHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999775 99999999997 57888999999999999999887543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=346.75 Aligned_cols=216 Identities=25% Similarity=0.351 Sum_probs=181.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++..
T Consensus 13 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 13 KIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred eEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 4789999998742 469999999999999999999999999999999999975 21124899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ .||+||+.+...... ..+.++.+++++++++.+++. +..++.+ ..||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 158 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSG-----YSLS 158 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC-----CCCC
Confidence 11457999999998887 799999988754321 234455567789999999984 3445544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|++|+++..
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 78999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 237 g~~~~ 241 (260)
T PRK10744 237 GNTDT 241 (260)
T ss_pred CCHHH
Confidence 87653
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=342.38 Aligned_cols=197 Identities=27% Similarity=0.413 Sum_probs=172.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cccCeEEEEe-cCCCCCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LDYGGVAYVT-QENIMLGTL 95 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~~~~i~yv~-Q~~~l~~~l 95 (661)
+++|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|.+.. ..++.++|++ |++.+++.+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 57999999999999999999999999999999999998874 899999997632 1245799998 556788899
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
||+|++.+....+ ....++..++++++++.+||.+..|+.++ .||||||||++||++|+.+|++++|||||+
T Consensus 111 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 111 PVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 9999998876542 23345556678899999999988888775 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 176 GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||+.++..+.+.|++++++ |+|||+++|++ +++.++||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999875 89999999997 5788999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=343.46 Aligned_cols=217 Identities=23% Similarity=0.352 Sum_probs=182.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+++ +....+|+|.++|++..
T Consensus 4 ~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 4 KVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred EEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 3789999998752 469999999999999999999999999999999999975 31124799999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+||+||+.+..... ......+.+++++++++.+|+.+ ..++.+ +.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 150 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNA-----MELS 150 (252)
T ss_pred CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc-----CcCC
Confidence 12457999999999999999999998765432 11233445567889999999864 334433 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..
T Consensus 151 ~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 151 GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 229 ~~~~~ 233 (252)
T PRK14256 229 GETKK 233 (252)
T ss_pred CCHHH
Confidence 88653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=345.84 Aligned_cols=216 Identities=23% Similarity=0.359 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.++ +....+|+|.++|++..
T Consensus 12 ~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 12 VYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred eEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 5789999998742 469999999999999999999999999999999999986 32124899999998742
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||+||+.+....+ ....+++.+++++++++.+|+.+ ..++.+ ++||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~-----~~LS 157 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA-----LSLS 157 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc-----ccCC
Confidence 124579999999988886 9999998865432 11233455667888999999853 344444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999975 79999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 236 g~~~~ 240 (259)
T PRK14274 236 NDTNK 240 (259)
T ss_pred CCHHH
Confidence 98654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=345.79 Aligned_cols=217 Identities=24% Similarity=0.371 Sum_probs=182.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. ...+|+|.++|++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 5789999998752 46999999999999999999999999999999999998631 114899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+||+||+.+....+. ..+.++.+++++++++.+||. +..++.+ .+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 150 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG-----GGLS 150 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc-----ccCC
Confidence 123579999999999999999999988764321 123445566788999999984 3445544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe------C
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS------G 222 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~------~ 222 (661)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|+ +
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~ 228 (258)
T PRK14241 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKP 228 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCC
Confidence 9999999999999999999999999999999999999999999965 68999999996 57889999999997 7
Q ss_pred CeEEEecCCCC
Q 045930 223 GETVYFGEAKS 233 (661)
Q Consensus 223 G~~v~~G~~~~ 233 (661)
|++++.|++++
T Consensus 229 g~i~~~~~~~~ 239 (258)
T PRK14241 229 GRLVEIDDTEK 239 (258)
T ss_pred ceEEecCCHHH
Confidence 99999987654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.30 Aligned_cols=224 Identities=19% Similarity=0.212 Sum_probs=184.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeeEEEECCeeccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~i~~~g~~~~~--- 77 (661)
.|+++||++.++.. +..+.+|+|||++|++||+++|+|+||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 3 ~L~v~~l~~~y~~~--~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTS--DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCC--CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 57899999998642 12356999999999999999999999999999999999998632 1248999999986421
Q ss_pred ------ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 045930 78 ------DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSN---MNNEEITDVIEEAITEMGLEDC---ADRLIGNWH 143 (661)
Q Consensus 78 ------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~lgL~~~---~d~~vg~~~ 143 (661)
.++.++||+|++. +.+.+||.+++.+......... ....+.++++.++++.+||.+. .++.+
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p---- 156 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP---- 156 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc----
Confidence 1246999999975 6788999999986532111000 1123446678999999999753 45554
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
.+|||||||||+||+||+.+|++||+||||+|||+.++.++++.|+++.++ |.|||++|||. ..+.+++|++++|++
T Consensus 157 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~ 234 (330)
T PRK15093 157 -YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYC 234 (330)
T ss_pred -hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 569999999999999999999999999999999999999999999999875 99999999996 578899999999999
Q ss_pred CeEEEecCCCC
Q 045930 223 GETVYFGEAKS 233 (661)
Q Consensus 223 G~~v~~G~~~~ 233 (661)
|++++.|+.++
T Consensus 235 G~ive~g~~~~ 245 (330)
T PRK15093 235 GQTVETAPSKE 245 (330)
T ss_pred CEEEEECCHHH
Confidence 99999998654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=378.43 Aligned_cols=220 Identities=21% Similarity=0.360 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+. ++.+|+|||+++++||+++|+||||||||||+|+|+|++++. ..+|+|.++|.+...
T Consensus 5 ~l~~~nl~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 5 LLEMKNITKTFG------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIR 77 (506)
T ss_pred eEEEeeeEEEeC------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHH
Confidence 478999999874 256999999999999999999999999999999999998751 138999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+....+.....+.++..++++++++.+||.+..++.++ +|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv 152 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLV 152 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHH
Confidence 135699999999999999999999987543211112344556678999999999888888775 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++.
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999999999987899999999996 578899999999999999999988765
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=342.92 Aligned_cols=218 Identities=27% Similarity=0.368 Sum_probs=181.1
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--- 77 (661)
|.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+|+|.++|++...
T Consensus 1 ~~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~ 74 (246)
T PRK14269 1 MIAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74 (246)
T ss_pred CceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH
Confidence 56789999998852 569999999999999999999999999999999999874211248999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccCHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSgGe 151 (661)
.++.++|++|++.+++ .||+||+.+....+.. .....+.+++++++++.+||.+ ..++.+ +.|||||
T Consensus 75 ~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G~ 147 (246)
T PRK14269 75 VALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNA-----LALSGGQ 147 (246)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHhcCCc-----ccCCHHH
Confidence 2457999999998887 6999999987543210 0122344566889999999953 344443 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++ +++.+++|++++|++|++++.|+.
T Consensus 148 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 225 (246)
T PRK14269 148 QQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGES 225 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999975 89999999996 578899999999999999999875
Q ss_pred CC
Q 045930 232 KS 233 (661)
Q Consensus 232 ~~ 233 (661)
++
T Consensus 226 ~~ 227 (246)
T PRK14269 226 KE 227 (246)
T ss_pred HH
Confidence 43
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=346.71 Aligned_cols=217 Identities=24% Similarity=0.344 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. ...+|+|.++|++...
T Consensus 19 ~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 19 KMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred eEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4789999998742 46999999999999999999999999999999999998631 1148999999987421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++. ||.||+.+....+.. ..+..+.+++++++++.+||.+ ..++.+ +.||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPG-----TGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCc-----ccCC
Confidence 24569999999988875 999999987643311 1123444567899999999964 334444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +.+.++||++++|++|+++..
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 68999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 244 g~~~~ 248 (267)
T PRK14235 244 GDTEK 248 (267)
T ss_pred CCHHH
Confidence 87543
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=319.86 Aligned_cols=219 Identities=26% Similarity=0.413 Sum_probs=195.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.+..++++.++.. ..+.+|+|||+++.+||.++++||||||||||||+++|..+|. .|+|.+||++..-....
T Consensus 3 ~l~~~~~sl~y~g----~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgae 75 (259)
T COG4525 3 MLNVSHLSLSYEG----KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAE 75 (259)
T ss_pred eeehhheEEecCC----cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCcc
Confidence 4566788887763 2266999999999999999999999999999999999999884 89999999987644445
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
-|.|+|++.++|.+||.||+.|+.+++ ++.+.++++++.+.+..+||++..++.+ -+|||||||||.|||||
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARAL 147 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARAL 147 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHh
Confidence 699999999999999999999999986 6788999999999999999999888876 46999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEecCCCChhH
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS--GGETVYFGEAKSAPT 236 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~--~G~~v~~G~~~~~~~ 236 (661)
..+|++|+||||++.||.-+++++.+.|-++.++ |+.++++||+. +|..-+++++++|+ .|+++..=+++-...
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 9999999999999999999999999999999875 99999999996 67888999999998 689998777663333
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=325.46 Aligned_cols=216 Identities=31% Similarity=0.470 Sum_probs=188.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD---- 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~---- 78 (661)
++.+|++|.+. .|++|++||++++|||++||+||||||||||||.|+|.+.|+ +|++.+||.+....
T Consensus 2 i~a~nls~~~~------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 2 IRAENLSYSLA------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred eeeeeeEEEee------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHH
Confidence 67899999986 378999999999999999999999999999999999999874 89999999875421
Q ss_pred -cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 79 -YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 79 -~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~--~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+.-+.+||+..+-...||+|-+.++.. |... ...+..+.+++.|...++.+.+.+.. +.|||||||||
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRV 144 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRV 144 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHH
Confidence 3456899999888767799999999853 3322 22355667899999999999988876 46999999999
Q ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 156 SIALEILT------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 156 sIa~aL~~------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
.+||.|+. ++++||||||||.||...+..++++.++++++|..|+++.||.+ ....+||||++|.+||++..|
T Consensus 145 qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g 223 (259)
T COG4559 145 QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASG 223 (259)
T ss_pred HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecC
Confidence 99999987 45699999999999999999999999999999999999999975 688899999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
+++++..
T Consensus 224 ~p~~vlt 230 (259)
T COG4559 224 SPQDVLT 230 (259)
T ss_pred CHHHhcC
Confidence 9988753
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=332.92 Aligned_cols=195 Identities=36% Similarity=0.638 Sum_probs=166.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----L 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~ 77 (661)
.++|+|+++.++.. +.++.+|+|+|+++++||+++|+||||||||||+++|+|+.++....+|+|.++|.+.. .
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKG--RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccC--CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 58999999999852 24567999999999999999999999999999999999998732125899999998743 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+||+||+.+.+... .++.+ ..||||||||++|
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~Ge~qrl~l 129 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGGERKRVSI 129 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHHHHHHHHH
Confidence 2457999999999999999999998764210 23333 4699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|++|+.+|+++||||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.+++|++++|++|++++.|
T Consensus 130 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 130 AEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876 6787777776556788999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=347.08 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=186.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~---~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEK---ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCC---CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEEEECCEECCcCCHH
Confidence 5889999998852 1124599999999999999999999999999999999999987 48999999987531
Q ss_pred -ccCeEEEEecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..++.++ .||||||||+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 149 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPA-----RLSGGQKQRV 149 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHH
Confidence 2457999999974 677789999998865432 23455556788999999999988888764 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++. .+|++++|++|+++..|++++.
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999876 999999999974 554 6999999999999999987654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=376.76 Aligned_cols=218 Identities=23% Similarity=0.426 Sum_probs=189.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+. ++.+|+|+||++++||+++|+|||||||||||++|+|.+++. +|+|.++|.+...
T Consensus 4 ~i~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFP------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeC------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 478999999874 256999999999999999999999999999999999999874 8999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+....+.. ...+.++.+++++++++.+||.+..|+.++ .||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qr 149 (501)
T PRK10762 75 SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQM 149 (501)
T ss_pred HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHH
Confidence 135699999999999999999999986532210 112334455678999999999988888875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++||+ .++.++||++++|++|+++..|++++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999999987899999999997 578899999999999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=367.60 Aligned_cols=227 Identities=28% Similarity=0.397 Sum_probs=198.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeeEEEECCeecc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~i~~~g~~~~---- 76 (661)
-|+++||++.+... +....+++||||++++||++||+|.|||||||+.++|.|+++.+ ...+|+|.++|++..
T Consensus 5 lL~V~nL~v~~~~~--~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATD--GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecC--CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 47899999999864 23357999999999999999999999999999999999999765 456899999997521
Q ss_pred -----cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 77 -----LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
.+.+.|+|++|++ .+.|-+||.+.+.-....+. ..++++.++++.++|+.+||.+.... +.++++|||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSG 157 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSG 157 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCc
Confidence 2346799999997 56777999999998877764 23488889999999999999886665 345678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||.||+||+.+|++||+||||++||+.++.+|++.|+++.++ |.++|++|||+ ..+.++||||++|.+|++|+.
T Consensus 158 G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999864 99999999997 588999999999999999999
Q ss_pred cCCCChhH
Q 045930 229 GEAKSAPT 236 (661)
Q Consensus 229 G~~~~~~~ 236 (661)
|+++++..
T Consensus 237 G~~~~i~~ 244 (539)
T COG1123 237 GPTEEILS 244 (539)
T ss_pred cCHHHHHh
Confidence 99877654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=360.20 Aligned_cols=206 Identities=28% Similarity=0.440 Sum_probs=179.5
Q ss_pred EEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------c
Q 045930 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------L 77 (661)
Q Consensus 7 ~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~ 77 (661)
||++.++. +. + |+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++.. .
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccch
Confidence 66766531 23 4 999999999999999999999999999999999874 899999998642 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+||+||+.+..... ...+.+++++++++.+||.+..|+.++ +|||||||||+|
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRval 142 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAI 142 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHH
Confidence 2457999999999999999999999875421 223445678999999999998888875 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++..++|++++|++|+++..|++++.
T Consensus 143 AraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 143 GRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999999999999876 89999999997 578899999999999999999987653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=348.20 Aligned_cols=220 Identities=28% Similarity=0.379 Sum_probs=183.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----CceeeEEEECCeeccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-----VVMTGNVLLNGKKRRL 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~i~~~g~~~~~ 77 (661)
|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|.+...
T Consensus 2 l~~~nl~~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 2 LTADHLHVARR------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred eEEEEEEEEEC------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 78999999874 256999999999999999999999999999999999998763 1127999999987531
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++|++|++.+++.+||+||+.+....... .....++..++++++++.+||.+..++.++ .|||||
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~ 150 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT-----TLSGGE 150 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHH
Confidence 134589999998766679999999875321100 011113345678899999999888777664 599999
Q ss_pred HHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 152 KKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 152 rqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~ 229 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEE
Confidence 99999999999 599999999999999999999999999999876 89999999997 57888999999999
Q ss_pred CCeEEEecCCCCh
Q 045930 222 GGETVYFGEAKSA 234 (661)
Q Consensus 222 ~G~~v~~G~~~~~ 234 (661)
+|++++.|++++.
T Consensus 230 ~G~i~~~g~~~~~ 242 (272)
T PRK13547 230 DGAIVAHGAPADV 242 (272)
T ss_pred CCeEEEecCHHHH
Confidence 9999999886543
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=341.84 Aligned_cols=216 Identities=25% Similarity=0.374 Sum_probs=179.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.+.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 3789999998752 469999999999999999999999999999999999853 42123799999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+....+ + ....+..+++++++++.+++.+ ..++.+ +.||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 150 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA-----LGLS 150 (252)
T ss_pred cchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc-----ccCC
Confidence 11457999999998887 79999999875432 1 1123334567888999998753 344444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 69999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 229 g~~~~ 233 (252)
T PRK14239 229 NDTKQ 233 (252)
T ss_pred CCHHH
Confidence 88654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=341.03 Aligned_cols=216 Identities=24% Similarity=0.326 Sum_probs=179.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCceeeEEEECCeeccc-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~---~~~~~~~G~i~~~g~~~~~- 77 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++. ..+|+|.++|++...
T Consensus 3 ~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 3 KIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDK 75 (250)
T ss_pred EEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccc
Confidence 5789999988742 56999999999999999999999999999999999973 321 137999999987421
Q ss_pred ------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCcccccc
Q 045930 78 ------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC----ADRLIGNWHWRGI 147 (661)
Q Consensus 78 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----~d~~vg~~~~~~L 147 (661)
.++.++|++|++.+++ .||.||+.+....+. ....++.++.++++++.+||.+. .++.+ +.|
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~L 147 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESA-----FAL 147 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc-----ccC
Confidence 1356999999998887 599999988754431 11223345678899999998643 34444 469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||+++|++ .++.++||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999995 479999999997 47889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 226 ~~~~~~~ 232 (250)
T PRK14245 226 YDDTKKI 232 (250)
T ss_pred ECCHHHH
Confidence 9986543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=340.54 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..+ +....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4789999998752 469999999999999999999999999999999999865 221248999999987421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ +||+||+.+....+. ..+.++.+++++++++.+++. +..++.+ +.||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 148 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA-----LGLS 148 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC-----CCCC
Confidence 2456999999988887 899999998754321 112344567788899999875 3345544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 79999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 227 ~~~~~ 231 (250)
T PRK14240 227 GDTVD 231 (250)
T ss_pred CCHHH
Confidence 87543
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=359.34 Aligned_cols=205 Identities=27% Similarity=0.452 Sum_probs=179.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
|++ ||++.++. +. + |+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++..
T Consensus 2 l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~ 69 (352)
T PRK11144 2 LEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGI 69 (352)
T ss_pred eEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccc
Confidence 455 77776642 22 3 899999999999999999999999999999999874 899999997642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.++|++|+..+++.+||+||+.+... ...+++++++++.+||++..++.++ +|||||||
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~q 135 (352)
T PRK11144 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQ 135 (352)
T ss_pred ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHH
Confidence 124679999999999999999999988642 1224568899999999988888775 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ +++..++|++++|++|+++..|+++
T Consensus 136 RvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~ 214 (352)
T PRK11144 136 RVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLE 214 (352)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999876 89999999996 5899999999999999999999876
Q ss_pred Ch
Q 045930 233 SA 234 (661)
Q Consensus 233 ~~ 234 (661)
+.
T Consensus 215 ~i 216 (352)
T PRK11144 215 EV 216 (352)
T ss_pred HH
Confidence 54
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=342.74 Aligned_cols=215 Identities=24% Similarity=0.330 Sum_probs=181.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee-----cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-----RR 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~-----~~ 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++ ..
T Consensus 6 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP---DAGEVHYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCccccccccc
Confidence 4789999998752 4699999999999999999999999999999999999987 48999999976 32
Q ss_pred c---------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccc
Q 045930 77 L---------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHW 144 (661)
Q Consensus 77 ~---------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~ 144 (661)
. .++.++|++|++ .+++.+|+.||+.+...... .....+.+++++++++.+++.+ ..++.++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 150 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLPT---- 150 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCCc----
Confidence 1 134699999997 46788899999976543210 1122345667889999999974 6677664
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.+++|++++|++|
T Consensus 151 -~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 151 -TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQG 228 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 59999999999999999999999999999999999999999999999875 89999999996 5788899999999999
Q ss_pred eEEEecCCCC
Q 045930 224 ETVYFGEAKS 233 (661)
Q Consensus 224 ~~v~~G~~~~ 233 (661)
++++.|++++
T Consensus 229 ~i~~~~~~~~ 238 (258)
T PRK11701 229 RVVESGLTDQ 238 (258)
T ss_pred EEEEeCCHHH
Confidence 9999998654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.68 Aligned_cols=216 Identities=25% Similarity=0.351 Sum_probs=181.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
-++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++. ...+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 4 KMESKNLNLWYG------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred EEEEEEeEEEEC------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 478899998874 256999999999999999999999999999999999987641 1148999999987521
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ +||+||+.+...... .....+.+++++++++.+||. +..++.+ +.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 149 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSA-----LKLS 149 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc-----ccCC
Confidence 1456999999998887 899999998754321 112344556788899999884 3345544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++|++++.
T Consensus 150 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 228 ~~~~~ 232 (251)
T PRK14270 228 NKTEK 232 (251)
T ss_pred CCHHH
Confidence 98654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=342.74 Aligned_cols=223 Identities=26% Similarity=0.345 Sum_probs=198.8
Q ss_pred eEEEEEEEEEeecCC--------ccc----------ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 045930 2 YLVWEEVTVVVPNFG--------SGP----------TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV 63 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~--------~~~----------~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~ 63 (661)
.++++|+...+.... .|. ...-++|+|++++.||+..|||-||||||||+++|.++.+|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--- 80 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--- 80 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC---
Confidence 478888888765310 011 12358999999999999999999999999999999999998
Q ss_pred eeeEEEECCeecc---------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 045930 64 MTGNVLLNGKKRR---------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC 134 (661)
Q Consensus 64 ~~G~i~~~g~~~~---------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 134 (661)
..|+|+++|++.. .+++.+++|+|...|+|+.||.||..|+..++ +.+++|+++++.++|+.+||+..
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 4999999998642 23578999999999999999999999998876 68899999999999999999999
Q ss_pred ccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhh
Q 045930 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 135 ~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~ 213 (661)
.++++. +|||||||||.+||||+.+|+||++|||+|.|||--+.++.+.|.+|.++ ++||+++|||. +|.+++
T Consensus 158 ~~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlri 231 (386)
T COG4175 158 ADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRI 231 (386)
T ss_pred hhcCcc-----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhc
Confidence 999875 69999999999999999999999999999999999999999999999765 89999999995 799999
Q ss_pred cCeEEEEeCCeEEEecCCCChhH
Q 045930 214 FDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 214 ~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
-|||.+|++|++|..|++++.+.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999987653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=341.06 Aligned_cols=215 Identities=23% Similarity=0.360 Sum_probs=177.8
Q ss_pred EEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc----
Q 045930 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~---- 77 (661)
+++|+++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 7 ~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 7 SVKNLNLWYG------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EeeeEEEEEC------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 5778888764 2569999999999999999999999999999999999975 211248999999986421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCccccccCHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC----ADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++. ||+||+.+....+. .....++.++.++++++.+||.+. .++.+ ++||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G 153 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA-----FELSGG 153 (251)
T ss_pred hHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh-----hhCCHH
Confidence 24579999999988886 99999988744321 111233445678899999999752 34433 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 89999999997 57888999999999999999887
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 232 ~~~ 234 (251)
T PRK14244 232 TQE 234 (251)
T ss_pred HHH
Confidence 543
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=332.90 Aligned_cols=200 Identities=30% Similarity=0.466 Sum_probs=173.0
Q ss_pred EEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------c
Q 045930 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------L 77 (661)
Q Consensus 7 ~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~ 77 (661)
+|++.+++ +.+ |+|+++++ |+++|+||||||||||+++|+|.+++. +|+|.++|.+.. .
T Consensus 5 ~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhh
Confidence 67776642 334 99999999 999999999999999999999999874 899999997642 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+||+||+.+..... ..+..+++++++++.+|+.+..++.++ .||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~l 142 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA-----QLSGGEKQRVAL 142 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcc-----cCCHHHHHHHHH
Confidence 2357999999999999999999998765321 233345678899999999887777764 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|+++..|
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 143 ARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999876 89999999996 5788899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=376.26 Aligned_cols=218 Identities=22% Similarity=0.341 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|+.++ .+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 5 YISMAGIGKSFG------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---TKGTITINNINYNKLDHK 75 (510)
T ss_pred eEEEeeeEEEcC------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC---CccEEEECCEECCCCCHH
Confidence 478999999874 25699999999999999999999999999999999999987 48999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC-CCC---CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRL-PSN---MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++|++|++.+++.+||+||+.+...... ..+ ...++.+++++++++.+||.+..|+.++ +|||||
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~ 150 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISH 150 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHH
Confidence 12469999999999999999999987542110 001 1234456778999999999988888875 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999999988899999999996 578899999999999999999988
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
++.
T Consensus 230 ~~~ 232 (510)
T PRK09700 230 SDV 232 (510)
T ss_pred hhC
Confidence 764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=340.20 Aligned_cols=217 Identities=24% Similarity=0.357 Sum_probs=180.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|.+++.. ..+|+|.++|.+..
T Consensus 4 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYG------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEEC------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 467899998874 2569999999999999999999999999999999999986531 13799999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++.+|+.||+.+..... .....++..+.+++.++.+++. +..++.+ +.||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 150 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTPA-----TGLS 150 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc-----ccCC
Confidence 11456999999999999999999998765432 1112344456677778888764 3445554 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 79999999997 578889999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 229 ~~~~~ 233 (252)
T PRK14272 229 GPTDQ 233 (252)
T ss_pred CCHHH
Confidence 87654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=340.10 Aligned_cols=216 Identities=23% Similarity=0.382 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG--NVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYG------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeC------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 478999999874 25699999999999999999999999999999999999763 11148999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ .||+||+.+...... ....++.++.++++++.+|+.+ ..++.+ ++||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 148 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPG-----TRLS 148 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh-----hhcC
Confidence 2457999999998887 899999998754321 1123344566888999999864 344444 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++|++++|++|+++..
T Consensus 149 ~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 79999999997 468899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 227 g~~~~ 231 (250)
T PRK14262 227 GPTRE 231 (250)
T ss_pred cCHHH
Confidence 98654
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=332.13 Aligned_cols=196 Identities=30% Similarity=0.442 Sum_probs=170.1
Q ss_pred EEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------
Q 045930 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--------- 76 (661)
Q Consensus 6 ~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--------- 76 (661)
+|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++ .+|+|.++|++..
T Consensus 2 ~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 2 KNISKKFG------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred cceEEEEC------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccchhhHHH
Confidence 67777764 24699999999999999999999999999999999999987 4899999998732
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
..++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||++..++.++ +||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr~~ 144 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQQRVA 144 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHHHHHH
Confidence 12357999999999999999999999875432 23344556778999999999888888774 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ..+.||++++|
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999999999999999999877999999999973 44689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=333.02 Aligned_cols=209 Identities=27% Similarity=0.445 Sum_probs=180.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+.+.+|+|+||++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~~~~--~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGH--GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccC--CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCHhH
Confidence 689999998753 11125799999999999999999999999999999999999887 48999999987521
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+|+.||+.+...... ..+.++.+++++++++.+||.+..++.+. .||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 149 (220)
T TIGR02982 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPH-----NLSGGQKQR 149 (220)
T ss_pred HHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHH
Confidence 23579999999999999999999998765321 13455566789999999999888888764 699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. +.++||++++|++|++
T Consensus 150 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999987 4899999999973 5689999999999985
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=341.72 Aligned_cols=216 Identities=23% Similarity=0.337 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|++...
T Consensus 20 ~l~~~nl~~~~~------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 20 ALSTKDLHVYYG------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred EEEEeeEEEEEC------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 578999998874 256999999999999999999999999999999999998631 1258999999986521
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++ .||+||+.+..... ....+++.++++.++++.++|.+ ..++. ++.||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~-----~~~LS 165 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHKS-----ALTLS 165 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCC-----cccCC
Confidence 1457999999988887 59999999875431 11234455677889999999854 34443 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNM-QQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 79999999997 478899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 244 g~~~~ 248 (267)
T PRK14237 244 DKTRN 248 (267)
T ss_pred CCHHH
Confidence 98654
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=313.29 Aligned_cols=210 Identities=29% Similarity=0.411 Sum_probs=185.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
++.++++.++.. ......||++|++.+++||-+||+|||||||||||-+++|+..++ +|+|.+.|++..
T Consensus 7 i~~~~l~ktvg~--~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 7 IEVHHLSKTVGQ--GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eehhhhhhhhcC--CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHH
Confidence 567778877764 223467999999999999999999999999999999999998884 999999998642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.+.+++|+|+|...++|+||..||+...+.++- .+..+..+...++|+.+||.+..+.+++ +|||||+|
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----qLSGGEQQ 153 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTHYPA-----QLSGGEQQ 153 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCcccccccCcc-----ccCchHHH
Confidence 234789999999999999999999999988762 2344556678899999999998888775 69999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||+||||++..|+|||.||||.+||..+..+|.+.|-.+.++ |.|.|++|||| .+..-|||.+-|.+|+++.
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999999875 99999999997 5888999999999999874
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=337.02 Aligned_cols=202 Identities=27% Similarity=0.351 Sum_probs=171.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CceeeEEEECCeeccc---ccCeEEEEecCCC--CCCCCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRRL---DYGGVAYVTQENI--MLGTLT 96 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-~~~~G~i~~~g~~~~~---~~~~i~yv~Q~~~--l~~~lT 96 (661)
+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++... .++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998761 0138999999987532 1357999999984 567789
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE---DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
++|++.+..... .....+.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPF-----QLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999998765432 112234456789999999998 45666654 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 174 TSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||+.++..+.+.|++++++ |+|||+++|++ +++..++|++++|++|+++..|++++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999875 89999999997 57889999999999999999987543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=342.34 Aligned_cols=216 Identities=22% Similarity=0.336 Sum_probs=178.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 21 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 21 ILEVKDLSIYYG------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred eEEEEEEEEEeC------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 378999999874 2569999999999999999999999999999999999753 111148999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++. ||+||+.+...... .......++.+.+.++.+++. +..++.+ ..||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 166 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-----LSLS 166 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc-----ccCC
Confidence 24579999999988885 99999988653221 112233455678889999885 3345554 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.
T Consensus 167 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 68999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 245 ~~~~~ 249 (268)
T PRK14248 245 DQTEQ 249 (268)
T ss_pred CCHHH
Confidence 87543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=343.79 Aligned_cols=215 Identities=23% Similarity=0.352 Sum_probs=178.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|++..
T Consensus 13 ~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 13 IISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred eEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5789999998752 56999999999999999999999999999999999997621 024899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||+||+.+.+..+ ... .+.+++++++++.+++. +..|+.+ +.||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 156 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKLNESG-----YSLS 156 (269)
T ss_pred CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCc-----ccCC
Confidence 123569999999988885 9999999876542 122 23345678888888874 3345544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC------
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG------ 222 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~------ 222 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ .++.++||++++|++
T Consensus 157 ~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~ 234 (269)
T PRK14259 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGG 234 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999965 79999999997 578999999999996
Q ss_pred -----CeEEEecCCCCh
Q 045930 223 -----GETVYFGEAKSA 234 (661)
Q Consensus 223 -----G~~v~~G~~~~~ 234 (661)
|++++.|+++++
T Consensus 235 ~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 235 SGGKVGYLVEFNETKKI 251 (269)
T ss_pred cccccceEEEeCCHHHH
Confidence 668998887554
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=373.54 Aligned_cols=211 Identities=20% Similarity=0.343 Sum_probs=186.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 11 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 81 (510)
T PRK15439 11 LLCARSISKQYS------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPA 81 (510)
T ss_pred eEEEEeEEEEeC------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHH
Confidence 478999999874 256999999999999999999999999999999999999874 8999999986431
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 149 (510)
T PRK15439 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVADRQIV 149 (510)
T ss_pred HHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChh-----hCCHHHHHHH
Confidence 124699999999999999999999875321 12345678899999999988888875 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999999999999999999988899999999996 578899999999999999999987654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=339.81 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=181.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|+||||||||+++|+|+.++.. ..+|+|.++|++..
T Consensus 7 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 7 AIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred eEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 4789999988742 469999999999999999999999999999999999987421 13899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+....+. ...+.+..++++++++.+|+. +..++.+ +.||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 152 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSA-----LGLS 152 (259)
T ss_pred cchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc-----ccCC
Confidence 12356999999998887 899999988754321 123344456788899999884 3445544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-----CC
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-----GG 223 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~-----~G 223 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|+ +|
T Consensus 153 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G 230 (259)
T PRK14260 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIG 230 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCc
Confidence 9999999999999999999999999999999999999999999976 69999999997 58899999999998 59
Q ss_pred eEEEecCCCCh
Q 045930 224 ETVYFGEAKSA 234 (661)
Q Consensus 224 ~~v~~G~~~~~ 234 (661)
++++.|++++.
T Consensus 231 ~i~~~~~~~~~ 241 (259)
T PRK14260 231 QMVEFGVTTQI 241 (259)
T ss_pred eEEEeCCHHHH
Confidence 99999987643
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=337.93 Aligned_cols=215 Identities=25% Similarity=0.344 Sum_probs=179.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+..
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYG------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEEC------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 688999999874 256999999999999999999999999999999999998641 014799999997642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccCH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGISG 149 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSg 149 (661)
..++.++|++|++.+++ .||.||+.+..... ....+++.++++++.++.+|+.+ ..++.+ .+|||
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~ 148 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA-----FGLSG 148 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCc-----ccCCH
Confidence 12456999999998887 79999998865432 11123344567888889888753 334444 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|
T Consensus 149 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g 226 (249)
T PRK14253 149 GQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHD 226 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 58999999997 5789999999999999999998
Q ss_pred CCC
Q 045930 230 EAK 232 (661)
Q Consensus 230 ~~~ 232 (661)
+.+
T Consensus 227 ~~~ 229 (249)
T PRK14253 227 DTQ 229 (249)
T ss_pred CHH
Confidence 754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=337.33 Aligned_cols=216 Identities=27% Similarity=0.388 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..+ +....+|+|.++|++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 4789999998752 469999999999999999999999999999999999986 21124899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ .||+||+.+...... ....+..+++++++++.+++. +..++.+ ++||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 149 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNA-----QAFS 149 (251)
T ss_pred chHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccCh-----hhCC
Confidence 12456999999998886 799999987654321 112333456788899999984 3344444 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++ .++.+++|++++|++|+++..
T Consensus 150 ~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999965 69999999997 578899999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 228 ~~~~~ 232 (251)
T PRK14251 228 GPTEE 232 (251)
T ss_pred CCHHH
Confidence 87653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=337.33 Aligned_cols=216 Identities=23% Similarity=0.322 Sum_probs=179.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.+.. +.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+..
T Consensus 4 ~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 4789999998742 469999999999999999999999999999999999987631 12699999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||+||+.+....+. ....++.++.++++++.++|.+ ..++.+ ..||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 149 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNLHKSG-----LALS 149 (251)
T ss_pred cChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHhhCCc-----ccCC
Confidence 124679999999988875 99999998754321 1122334566788888888753 344443 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++ +++.++||++++|++|++++.
T Consensus 150 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999995 589999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 228 ~~~~~ 232 (251)
T PRK14249 228 GRTGE 232 (251)
T ss_pred CCHHH
Confidence 87543
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=337.37 Aligned_cols=216 Identities=23% Similarity=0.339 Sum_probs=179.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG--NVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 6 ~i~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 6 ILSTKNLNLWYG------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred eEEEeeeEEEEC------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 478999998874 25699999999999999999999999999999999998652 11137999999987421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+ ..++.+ +.||
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 151 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSA-----LSLS 151 (253)
T ss_pred cchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcCh-----hhCC
Confidence 14569999999988885 99999998765431 1123344567888899988853 234444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|+++..
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEc
Confidence 9999999999999999999999999999999999999999999976 58999999996 578889999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 230 g~~~~ 234 (253)
T PRK14261 230 DKTTQ 234 (253)
T ss_pred CCHHH
Confidence 88653
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=337.72 Aligned_cols=214 Identities=26% Similarity=0.337 Sum_probs=179.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-ceeeEEEECCeeccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV-VMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~i~~~g~~~~~--- 77 (661)
.|+++|+++.+ . +.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~-~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 76 (254)
T PRK10418 4 QIELRNIALQA-A------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL 76 (254)
T ss_pred EEEEeCeEEEe-c------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc
Confidence 47899999876 1 459999999999999999999999999999999999987621 148999999987531
Q ss_pred ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCccccccCHHHH
Q 045930 78 DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED---CADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 ~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~~LSgGer 152 (661)
.++.++|++|++. +.+.+|+.+++.+.+... .... .++++.++++.+||.+ ..++.+ +.||||||
T Consensus 77 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~Gq~ 146 (254)
T PRK10418 77 RGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYP-----FEMSGGML 146 (254)
T ss_pred ccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCC-----cccCHHHH
Confidence 2356999999974 456689999987754322 1112 2367889999999976 356655 46999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|++++.|++
T Consensus 147 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~ 225 (254)
T PRK10418 147 QRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDV 225 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999875 89999999996 578889999999999999999886
Q ss_pred CC
Q 045930 232 KS 233 (661)
Q Consensus 232 ~~ 233 (661)
++
T Consensus 226 ~~ 227 (254)
T PRK10418 226 ET 227 (254)
T ss_pred HH
Confidence 54
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=339.53 Aligned_cols=222 Identities=24% Similarity=0.289 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeecC---CcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-
Q 045930 2 YLVWEEVTVVVPNF---GSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~- 77 (661)
.|+++|+++.++.. +...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccc
Confidence 47899999987520 111135799999999999999999999999999999999999887 48999999986421
Q ss_pred -------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccccc
Q 045930 78 -------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGI 147 (661)
Q Consensus 78 -------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~L 147 (661)
.++.++|++|++ .+.+..|+.|++.+..... ......+...+++++++.+|+. +..++.++ .|
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~L 152 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRPP-----QL 152 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCc-----cC
Confidence 135799999997 4677899999997754311 1223445556789999999997 56777664 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999999875 89999999996 5788899999999999999
Q ss_pred EecCCCCh
Q 045930 227 YFGEAKSA 234 (661)
Q Consensus 227 ~~G~~~~~ 234 (661)
+.|++++.
T Consensus 232 ~~g~~~~~ 239 (268)
T PRK10419 232 ETQPVGDK 239 (268)
T ss_pred eeCChhhc
Confidence 99987653
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=334.88 Aligned_cols=219 Identities=26% Similarity=0.370 Sum_probs=181.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR--LSGNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|||+++++||+++|+||||||||||+++|+|+ +++ .+|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 7 ILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLE 77 (252)
T ss_pred eEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCC
Confidence 3789999988742 4699999999999999999999999999999999997 344 48999999986431
Q ss_pred ---cc-CeEEEEecCCCCCCCCCHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 78 ---DY-GGVAYVTQENIMLGTLTVRETIAYSAHLRLP----SNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 ---~~-~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
.. ..++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.++ .+||
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS 153 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFS 153 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCC
Confidence 11 2488999999999999999999875432110 0112233456788899999997 45666653 1499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~ 227 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ +.+... +|++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999999987799999999996 456665 89999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9988743
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=369.30 Aligned_cols=218 Identities=23% Similarity=0.402 Sum_probs=185.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++ ++.+|+|||+++++||+++|+|||||||||||++|+|+.++. ..+|+|.++|++...
T Consensus 2 l~i~~l~~~~~------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 2 LEMKGIVKTFG------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred EEEEeEEEEeC------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 68899999874 256999999999999999999999999999999999998751 138999999986532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCccccccCHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCA-DRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+........ ....++.+++++++++.+||.+.. ++.++ .||||||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qr 149 (500)
T TIGR02633 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG-----DYGGGQQQL 149 (500)
T ss_pred HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh-----hCCHHHHHH
Confidence 1356999999999999999999998865432111 123344566789999999998754 45554 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999999999999988899999999996 57889999999999999999988765
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=338.13 Aligned_cols=218 Identities=26% Similarity=0.377 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.+.. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. +..+|+|.++|++..
T Consensus 7 ~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~ 80 (261)
T PRK14258 7 AIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR 80 (261)
T ss_pred eEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc
Confidence 4789999998742 46999999999999999999999999999999999998752 234799999997642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ +||+||+.+...... ..+..+.++++.++++.+++.+ ..++.+ ..||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 152 (261)
T PRK14258 81 VNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSA-----LDLS 152 (261)
T ss_pred cchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc-----ccCC
Confidence 11456999999988888 899999988654321 1133344567889999999854 334443 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC-----
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG----- 222 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~----- 222 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++ .++.++||++++|++
T Consensus 153 gGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~ 231 (261)
T PRK14258 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRI 231 (261)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcC
Confidence 9999999999999999999999999999999999999999999976 489999999997 578999999999999
Q ss_pred CeEEEecCCCCh
Q 045930 223 GETVYFGEAKSA 234 (661)
Q Consensus 223 G~~v~~G~~~~~ 234 (661)
|++++.|++++.
T Consensus 232 G~i~~~~~~~~~ 243 (261)
T PRK14258 232 GQLVEFGLTKKI 243 (261)
T ss_pred ceEEEeCCHHHH
Confidence 999999987654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=335.66 Aligned_cols=216 Identities=25% Similarity=0.355 Sum_probs=177.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 5 IITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred eEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 4789999998742 569999999999999999999999999999999999864 31113899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++ .||.||+.+....+. ....+..++++.+.++.+++. +..++.+ ..||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LS 150 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHLHESA-----LSLS 150 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhhHHhcCc-----ccCC
Confidence 12457999999998888 699999998754321 112233345677788888774 3344444 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+.+|++++|++|+++..
T Consensus 151 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 151 GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 58999999997 578899999999999999998
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++.+
T Consensus 229 ~~~~~ 233 (252)
T PRK14255 229 ADTKQ 233 (252)
T ss_pred CCHHH
Confidence 87653
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=339.93 Aligned_cols=216 Identities=25% Similarity=0.350 Sum_probs=180.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+...
T Consensus 25 ~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 25 ALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred EEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3788999998742 46999999999999999999999999999999999997631 1248999999987421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.+++. ||+||+.+....+ ....+++.+++++++++.+++.+ ..++.+ +.||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS 170 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHENA-----FGLS 170 (272)
T ss_pred cCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc-----ccCC
Confidence 24579999999988886 9999998875432 11123344567888999999864 344443 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||++++|++|+++..
T Consensus 171 ~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999976 78999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 249 g~~~~ 253 (272)
T PRK14236 249 GDTDT 253 (272)
T ss_pred CCHHH
Confidence 87543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=338.59 Aligned_cols=210 Identities=28% Similarity=0.456 Sum_probs=168.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKP----DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP---ENGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCC----CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCeehHhcCHHH
Confidence 468899988742 125699999999999999999999999999999999999987 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD-----VIEEAITEM--GLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++ .||+||+.+... .....+..+ ...+.++.+ ++++..++.+ +.||||
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~~LSgG 142 (237)
T cd03252 74 LRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQG-----AGLSGG 142 (237)
T ss_pred HhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCC-----CcCCHH
Confidence 2456999999988775 699999987431 111211111 123344444 4444444444 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~ 219 (237)
T cd03252 143 QRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGS 219 (237)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999974 899999999974 55 4699999999999999988
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 220 ~~~ 222 (237)
T cd03252 220 HDE 222 (237)
T ss_pred HHH
Confidence 654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=322.99 Aligned_cols=188 Identities=54% Similarity=0.874 Sum_probs=164.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++....+..+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCchHh
Confidence 578999999886311111356999999999999999999999999999999999998 76 48999999987532
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+|++||+.+...+. .||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~l 122 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGERKRVSI 122 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHHHHHHH
Confidence 3467999999999999999999998653210 399999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++..++.+++|++++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998779999999999855688899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=335.99 Aligned_cols=215 Identities=26% Similarity=0.339 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee-----cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-----RR 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~-----~~ 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++ ..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 3 LLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP---DHGTATYIMRSGAELELY 73 (253)
T ss_pred eEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEEecccccccccc
Confidence 4789999998752 4589999999999999999999999999999999999887 48999999865 21
Q ss_pred c---------ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 045930 77 L---------DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHW 144 (661)
Q Consensus 77 ~---------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~ 144 (661)
. .++.++|++|++. +.+.+|+.||+.+..... . .....+.++.++++++.+|+. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---- 147 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLPR---- 147 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCch----
Confidence 1 1246999999974 456789999997643211 0 111223456788999999997 46777664
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++ .++..++|++++|++|
T Consensus 148 -~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 148 -AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQG 225 (253)
T ss_pred -hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 59999999999999999999999999999999999999999999998765 89999999996 5788899999999999
Q ss_pred eEEEecCCCC
Q 045930 224 ETVYFGEAKS 233 (661)
Q Consensus 224 ~~v~~G~~~~ 233 (661)
++++.|++++
T Consensus 226 ~i~~~~~~~~ 235 (253)
T TIGR02323 226 RVVESGLTDQ 235 (253)
T ss_pred EEEEECCHHH
Confidence 9999987543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=342.14 Aligned_cols=216 Identities=23% Similarity=0.352 Sum_probs=178.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +....+|+|.++|++..
T Consensus 39 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 39 HVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred EEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence 4788999988742 459999999999999999999999999999999999853 21114899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+. +..++.+ ..||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 184 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNA-----LGLS 184 (286)
T ss_pred cchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCCh-----hhCC
Confidence 124579999999988875 99999998754321 112333456788889998874 3445544 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 68999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 263 g~~~~ 267 (286)
T PRK14275 263 APTAQ 267 (286)
T ss_pred CCHHH
Confidence 88654
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=340.09 Aligned_cols=217 Identities=26% Similarity=0.380 Sum_probs=180.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DY 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~~ 79 (661)
.|+++|+++.+++ ++.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++... ..
T Consensus 6 ~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEhHHhhcc
Confidence 5889999998742 25699999999999999999999999999999999999887 48999999987532 12
Q ss_pred CeEEEEecCCCCC--CCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 80 GGVAYVTQENIML--GTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 80 ~~i~yv~Q~~~l~--~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
+.++|++|++.+. ...+++|++.+....... ......+.+++++++++.+||.+..|+.++ .||||||||++
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ 152 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVF 152 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHH
Confidence 4699999997652 234789988654211000 011123335567889999999988888775 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+++++ +|++++.|++++
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 99999999999999999999999999999999999987899999999996 5788999999877 899999998764
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=329.91 Aligned_cols=191 Identities=28% Similarity=0.363 Sum_probs=164.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
.+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... ..+...+.+.+||+|
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~-------~~~~~~~~~~~tv~e 103 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSL-------LGLGGGFNPELTGRE 103 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchh-------hcccccCCCCCcHHH
Confidence 36799999999999999999999999999999999999887 48999999986421 112234567899999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
|+.+..... ..+.++.+++++++++.+||++..++.++ +||||||||++||++|+.+|+++||||||+|||+
T Consensus 104 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 104 NIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 998876432 22344556678899999999988888775 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 176 ~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999987789999999996 5788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=339.06 Aligned_cols=220 Identities=23% Similarity=0.306 Sum_probs=181.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|.+..
T Consensus 21 ~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 21 AMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred EEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 4789999998752 56999999999999999999999999999999999998741 024899999998642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.++|++|++.+++ .||+||+.+..... ...+.++.++++.++++.+||.+..++... ..++.|||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~q 170 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQ 170 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHH
Confidence 12457999999998888 79999998764322 112444555677889999999753221111 123569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.+++|++++|++|++++.|++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999999996 57889999999999999999998654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=368.41 Aligned_cols=214 Identities=21% Similarity=0.325 Sum_probs=183.8
Q ss_pred EEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------cc
Q 045930 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DY 79 (661)
Q Consensus 6 ~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~ 79 (661)
+|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|++... .+
T Consensus 2 ~nl~~~~~------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFP------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeC------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHh
Confidence 57777764 256999999999999999999999999999999999999874 8999999987531 13
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++.++ +|||||||||+||+
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~ 147 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAK 147 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHH
Confidence 5699999999899999999999875421101012334455678999999999888888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999988899999999996 578899999999999999999987653
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=322.08 Aligned_cols=188 Identities=48% Similarity=0.835 Sum_probs=162.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-cccC
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYG 80 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~~~~ 80 (661)
.++++|+++.++.. +.++.+|+|+|+++++||+++|+|||||||||||++|+|+.... ..+|+|.++|++.. ..++
T Consensus 3 ~l~~~~l~~~~~~~--~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVK--GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG-VITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEecCC--CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEEECCEehHHHhhh
Confidence 47899999988531 11256999999999999999999999999999999999986310 14899999998753 2245
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
.++|++|++.+++.+||+||+.+...++ .||||||||++||++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~qrv~la~a 122 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRKRLTIGVE 122 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhHHHHHHHH
Confidence 7999999999999999999998753110 399999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-CeEEEec
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG-GETVYFG 229 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~-G~~v~~G 229 (661)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999877999999999975357889999999998 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=366.83 Aligned_cols=215 Identities=25% Similarity=0.403 Sum_probs=185.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP---DAGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHH
Confidence 4789999998742 4699999999999999999999999999999999999887 48999999987531
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+||.||+.+.............+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv 149 (501)
T PRK11288 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIGQRQMV 149 (501)
T ss_pred HHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHHHHHHH
Confidence 245799999999999999999999986421110112344556778999999999877777765 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|+++..++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999988899999999997 578899999999999999876653
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=338.91 Aligned_cols=216 Identities=20% Similarity=0.336 Sum_probs=177.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|+||||||||+++|+|.++ +....+|+|.++|++..
T Consensus 24 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 24 VFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred EEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 3788999987742 469999999999999999999999999999999999986 21124899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC----CccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL----EDCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||+||+.+....+. ....+..++.+.+.++.+++ .+..++.+ +.||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-----~~LS 169 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA-----YGLS 169 (271)
T ss_pred ccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc-----ccCC
Confidence 124579999999988874 99999998754321 11222334567777887754 33344444 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.
T Consensus 170 gGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 79999999996 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|+.++
T Consensus 248 g~~~~ 252 (271)
T PRK14238 248 DDTDK 252 (271)
T ss_pred CCHHH
Confidence 87543
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=336.74 Aligned_cols=212 Identities=30% Similarity=0.456 Sum_probs=168.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 1 l~i~~l~~~~~~---~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPS---RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP---TSGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCC---CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEEECCEehhhcCHHH
Confidence 468999988752 1225699999999999999999999999999999999999887 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD-----VIEEAITEM--GLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ ++....++.+ +.||||
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~G 143 (238)
T cd03249 75 LRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERG-----SQLSGG 143 (238)
T ss_pred HHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeeccCC-----ccCCHH
Confidence 1356999999988876 6999999875321 11121111 112223333 3443444433 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+
T Consensus 144 ~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~ 220 (238)
T cd03249 144 QKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGT 220 (238)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999997 7999999999974 564 899999999999999887
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
.++.
T Consensus 221 ~~~~ 224 (238)
T cd03249 221 HDEL 224 (238)
T ss_pred HHHH
Confidence 5543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=339.40 Aligned_cols=214 Identities=24% Similarity=0.388 Sum_probs=178.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.++. ...+|+|.++|.+..
T Consensus 39 ~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 39 VIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred eEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 3788999988742 46999999999999999999999999999999999998621 014899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||.||+.+....+ .... +.+++++++++.+||. +..++.+ ..||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~-----~~LS 182 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDSSG-----LDLS 182 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCc-----ccCC
Confidence 124579999999988885 9999999876543 1222 3456789999999985 3445554 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLF-LLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~-lL~~G~~v~ 227 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.+++|+++ +|++|+++.
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999874 8999999996 57888999975 679999999
Q ss_pred ecCCCC
Q 045930 228 FGEAKS 233 (661)
Q Consensus 228 ~G~~~~ 233 (661)
.|++++
T Consensus 261 ~g~~~~ 266 (285)
T PRK14254 261 FDDTDK 266 (285)
T ss_pred eCCHHH
Confidence 887543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=373.91 Aligned_cols=222 Identities=20% Similarity=0.264 Sum_probs=188.2
Q ss_pred eEEEEEEEEEeecCCc-----ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc
Q 045930 2 YLVWEEVTVVVPNFGS-----GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~ 76 (661)
.|+++||++.++.... ...+.+|+||||+|++||+++|+||||||||||+++|+|++++ .+|+|.++|++..
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p---~~G~I~~~g~~i~ 389 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES---QGGEIIFNGQRID 389 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCcEEEECCEECC
Confidence 3789999998852100 0124699999999999999999999999999999999999987 4899999998642
Q ss_pred c--------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCcccc
Q 045930 77 L--------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWR 145 (661)
Q Consensus 77 ~--------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~ 145 (661)
. .++.++||+|++ .+++.+||.|++.+....+. ....++.+++++++++.+||. +..++.++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~----- 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPH----- 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc-----
Confidence 1 235799999997 58899999999998754321 112445567899999999996 56788775
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+|||||||||+||+||+.+|++|||||||+|||+.++.++++.|++++++ |.|||++|||+ +.+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999875 89999999996 57889999999999999
Q ss_pred EEEecCCCCh
Q 045930 225 TVYFGEAKSA 234 (661)
Q Consensus 225 ~v~~G~~~~~ 234 (661)
+++.|+++++
T Consensus 542 iv~~g~~~~i 551 (623)
T PRK10261 542 IVEIGPRRAV 551 (623)
T ss_pred EEEecCHHHH
Confidence 9999987654
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=344.58 Aligned_cols=222 Identities=23% Similarity=0.335 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.++++|+++.+.. ..+.+|+|+|++|++||++||+|||||||||||++|+|..+.. ...+|+|.++|.+..
T Consensus 80 ~i~~~nls~~y~~----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 80 VFEIRNFNFWYMN----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred eEEEEeeEEEecC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4789999998853 2356999999999999999999999999999999999987521 124899999998753
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNE-EITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~-~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
..++.++|++|++.+++ .||+||+.|..... ..+.+ ..++.++++++.++|.+..++.++. ....|||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~~LSgGq 230 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AGNALSGGQ 230 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-CcccCCHHH
Confidence 12467999999998885 79999999865332 12222 2345578889999885443333432 345799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++ ..+.++||+|++|++|++++.|++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 69999999996 578889999999999999999987
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
+++
T Consensus 309 ~~l 311 (329)
T PRK14257 309 KTI 311 (329)
T ss_pred HHH
Confidence 654
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=334.69 Aligned_cols=210 Identities=29% Similarity=0.419 Sum_probs=171.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPG----DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCC----CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhhhCCHHH
Confidence 468999998753 123699999999999999999999999999999999999987 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD-----VIEEAITEM--GLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++.+++ .||+||+.+.... ....+..+ .+++.++.+ ++++..++.+ ..||||
T Consensus 74 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~LS~G 142 (234)
T cd03251 74 LRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERG-----VKLSGG 142 (234)
T ss_pred HHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCC-----CcCCHH
Confidence 2456999999998886 6999999875321 12222111 234555555 5665555554 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.. ||++++|++|++++.|+
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~v~~l~~G~i~~~~~ 219 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL-STIEN-ADRIVVLEDGKIVERGT 219 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHhh-CCEEEEecCCeEeeeCC
Confidence 99999999999999999999999999999999999999999975 89999999997 45654 99999999999998887
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
.++
T Consensus 220 ~~~ 222 (234)
T cd03251 220 HEE 222 (234)
T ss_pred HHH
Confidence 554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=335.07 Aligned_cols=217 Identities=28% Similarity=0.402 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CceeeEEEECCeecc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN---VVMTGNVLLNGKKRR-- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~---~~~~G~i~~~g~~~~-- 76 (661)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+.|++.++|.+..
T Consensus 10 ~i~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 10 VFNISRLYLYIN------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83 (257)
T ss_pred heeeeeEEEecC------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC
Confidence 367889998874 256999999999999999999999999999999999998763 123355555555431
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccCH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGISG 149 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LSg 149 (661)
..++.++|++|++.+++.+||+||+.+...... ...+++.+++++++++.+++.+ ..++.+ +.|||
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~LS~ 156 (257)
T PRK14246 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPA-----SQLSG 156 (257)
T ss_pred CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCc-----ccCCH
Confidence 124579999999999999999999998754321 1234455677899999999963 345544 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ ++|||+++|++ ..+.++||++++|++|+++..|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999965 69999999996 5788999999999999999999
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
+.++
T Consensus 235 ~~~~ 238 (257)
T PRK14246 235 SSNE 238 (257)
T ss_pred CHHH
Confidence 7653
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=403.80 Aligned_cols=222 Identities=29% Similarity=0.431 Sum_probs=198.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----L 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~ 77 (661)
.|+++||++.++. ..+.+|+|||+.+++||++||+||||||||||+|+|+|..+++ +|+|.++|++.. .
T Consensus 1937 ~L~v~nLsK~Y~~----~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1937 ILRLNELTKVYSG----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred eEEEEEEEEEECC----CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 3788999988742 1357999999999999999999999999999999999999884 899999998753 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||.+.+|++++ +|||||||||+|
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLST 2081 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999887764 34455567788999999999999999886 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTF 237 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 237 (661)
|+||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++ +++.++|||+++|.+|++++.|++++....
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999999999988899999999996 689999999999999999999999887776
Q ss_pred HH
Q 045930 238 FA 239 (661)
Q Consensus 238 f~ 239 (661)
|.
T Consensus 2161 ~g 2162 (2272)
T TIGR01257 2161 FG 2162 (2272)
T ss_pred hC
Confidence 64
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=366.55 Aligned_cols=216 Identities=30% Similarity=0.498 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|++ +++..||+|+||+++|||++||+||||+||||+.+.|-.++.|. +|+|++||.+.+.
T Consensus 465 ~IeF~~VsFaYP~---Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 465 VIEFEDVSFAYPT---RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHK 538 (716)
T ss_pred eEEEEEeeeecCC---CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHH
Confidence 4799999999986 34678999999999999999999999999999999999999984 9999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-HH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI-TE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l-~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.+++||+|.|||.+|.. ||+|||.|+.. +.+.++.+..++..- ++ .++.+-.||.+|+. ..+|||||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEk-G~qLSGGQKQ 611 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEK-GSQLSGGQKQ 611 (716)
T ss_pred HHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCc-cccccchHHH
Confidence 35789999999999988 99999999854 345666554433332 11 37788899999973 3479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++|||||++||+||||||.||+||+.+...+.+.|.++.+ ++|||++.|.. ...+.+|+|+++++|++++.|.-++
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRL--STV~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRL--STVRHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhh--hHhhhccEEEEEcCCeEEecccHHH
Confidence 99999999999999999999999999999999999999876 49999999996 4678899999999999999997544
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=323.57 Aligned_cols=197 Identities=26% Similarity=0.359 Sum_probs=171.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+... .
T Consensus 2 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHh
Confidence 688999998742 46999999999999999999999999999999999999874 8999999987431 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||.||+.+....+ .. +.+++++++++.+||.+..|+.++ .||||||||++||
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la 141 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVR-----QLSAGQQRRVALA 141 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHH
Confidence 457999999999999999999999876432 11 224568899999999888887764 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.+.-+|++++
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 999999999999999999999999999999999987789999999997 4676766777766
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=375.26 Aligned_cols=220 Identities=25% Similarity=0.299 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec------
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR------ 75 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~------ 75 (661)
.|+++|+++.+... +..+++|+||||++++||++||+||||||||||+++|+|++++. +|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~--~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 12 VLAVENLNIAFMQE--QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred eEEEeceEEEecCC--CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEecccccc
Confidence 47899999988531 11246999999999999999999999999999999999999874 89999988521
Q ss_pred -------c------cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccc
Q 045930 76 -------R------LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED---CADR 137 (661)
Q Consensus 76 -------~------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~ 137 (661)
. ...+.+|||+|++ .+++.+||.||+.+..+.+. ..+..+.+++++++++.+||.+ ..++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 164 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR 164 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence 0 0124699999997 68889999999999865421 2345566778999999999963 4666
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCe
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.++ +|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++++ |+|||++||++ .++.++||+
T Consensus 165 ~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adr 238 (623)
T PRK10261 165 YPH-----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADR 238 (623)
T ss_pred CCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCE
Confidence 664 69999999999999999999999999999999999999999999999865 99999999996 578899999
Q ss_pred EEEEeCCeEEEecCCCCh
Q 045930 217 LFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 217 v~lL~~G~~v~~G~~~~~ 234 (661)
|++|++|++++.|++++.
T Consensus 239 i~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQI 256 (623)
T ss_pred EEEeeCCeecccCCHHHh
Confidence 999999999998887543
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=332.21 Aligned_cols=214 Identities=23% Similarity=0.294 Sum_probs=184.1
Q ss_pred CeEEEEEEEEEeecCC--------------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee
Q 045930 1 MYLVWEEVTVVVPNFG--------------SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~--------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G 66 (661)
+++.++|++.++..+. +..++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 3688999998887632 113457999999999999999999999999999999999999874 89
Q ss_pred EEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccc
Q 045930 67 NVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 67 ~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
+|.++|. ++++.|+..+.+.+||.||+.+..... ..+.++..+.++++++.++|.+..++.++ .
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVK-----K 143 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----c
Confidence 9999985 456778877788899999998765432 23445556677888999999888887764 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987899999999996 5788999999999999999
Q ss_pred EecCCCCh
Q 045930 227 YFGEAKSA 234 (661)
Q Consensus 227 ~~G~~~~~ 234 (661)
..|+.++.
T Consensus 223 ~~g~~~~~ 230 (264)
T PRK13546 223 DYGELDDV 230 (264)
T ss_pred EeCCHHHH
Confidence 99886554
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=328.61 Aligned_cols=208 Identities=30% Similarity=0.453 Sum_probs=172.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 2 RIEFRNVSFSYPN----QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDIRQLDPA 74 (220)
T ss_pred eEEEEEEEEEcCC----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCeEEECCEEhHHCCHH
Confidence 4788999988742 125699999999999999999999999999999999999877 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG------NWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSgG 150 (661)
.++.++|++|++.+++ .||.||+.+... ... .+.+.++++.+++.+..++.+. ......||||
T Consensus 75 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG 144 (220)
T cd03245 75 DLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGG 144 (220)
T ss_pred HHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHH
Confidence 2357999999998887 699999976421 111 2346678888899877776542 1123579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|++++.|
T Consensus 145 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999999765 89999999974 44 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=331.69 Aligned_cols=217 Identities=22% Similarity=0.328 Sum_probs=180.8
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEECCeeccc-
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLLNGKKRRL- 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~~g~~~~~- 77 (661)
+.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +....+|+|.+||.+...
T Consensus 2 ~~l~~~~v~~~~~------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 2 YRIEVENLNTYFD------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred cEEEEEeEEEEeC------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 3578999998874 2569999999999999999999999999999999999864 211148999999987421
Q ss_pred ------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCcccccc
Q 045930 78 ------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC----ADRLIGNWHWRGI 147 (661)
Q Consensus 78 ------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----~d~~vg~~~~~~L 147 (661)
.++.++|++|++.+++. |+.||+.+..... .....+..++++.++++.+||.+. .++.+ ..|
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~L 147 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSA-----LGL 147 (250)
T ss_pred cccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCc-----ccC
Confidence 14579999999988885 9999998765332 112234456778899999998543 34433 569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.+.+|++++|++|++++
T Consensus 148 S~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 148 SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999965 79999999997 57899999999999999999
Q ss_pred ecCCCC
Q 045930 228 FGEAKS 233 (661)
Q Consensus 228 ~G~~~~ 233 (661)
.|++++
T Consensus 226 ~g~~~~ 231 (250)
T PRK14266 226 SGLTDQ 231 (250)
T ss_pred eCCHHH
Confidence 988654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=357.20 Aligned_cols=221 Identities=25% Similarity=0.342 Sum_probs=190.8
Q ss_pred EEEEEEEEEeecCC-----cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec--
Q 045930 3 LVWEEVTVVVPNFG-----SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-- 75 (661)
Q Consensus 3 l~~~~l~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-- 75 (661)
|+.+||+..+...+ ......+++||||++++||++||+|+||||||||.++|+|+.+|. +|+|.++|.+.
T Consensus 281 l~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~ 357 (539)
T COG1123 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDL 357 (539)
T ss_pred eEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCccccc
Confidence 67899999887522 122357899999999999999999999999999999999999884 89999999762
Q ss_pred -----ccccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccccc
Q 045930 76 -----RLDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGI 147 (661)
Q Consensus 76 -----~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~L 147 (661)
...++++-+|+||+ .+.|.+||++++......+.+ ....+.++++.++++.+||.. ..++++ ++|
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP-----~el 430 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYP-----HEL 430 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCc-----hhc
Confidence 11245678888886 689999999999998776533 235677788999999999985 577766 569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|||||||++|||||+.+|++|++|||||.||+..+.++++.|+++.++ |.|.|+++||. +.+..+||||.+|.+|++|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999886 99999999996 6899999999999999999
Q ss_pred EecCCCCh
Q 045930 227 YFGEAKSA 234 (661)
Q Consensus 227 ~~G~~~~~ 234 (661)
+.|+.+++
T Consensus 510 E~G~~~~v 517 (539)
T COG1123 510 EEGPTEKV 517 (539)
T ss_pred EeCCHHHH
Confidence 99976543
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=329.79 Aligned_cols=218 Identities=29% Similarity=0.374 Sum_probs=178.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeeccc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~--- 77 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++ .+|+|.++|.+...
T Consensus 2 i~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSVED------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEeCC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCH
Confidence 789999998752 46999999999999999999999999999999999995 45 48999999976421
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHh-cCC--CC-CCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAH-LRL--PS-NMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++.+|+.+++.+... ++. .. .....+..++++++++.+++. +..++.+. +.|||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~ 148 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSG 148 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCH
Confidence 12469999999998888888877654321 110 00 012223456788899999995 45555542 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~~ 228 (661)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++ ..+... +|++++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~-~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHhhhCCEEEEEECCeEEEe
Confidence 999999999999999999999999999999999999999999987789999999996 456666 899999999999999
Q ss_pred cCCCCh
Q 045930 229 GEAKSA 234 (661)
Q Consensus 229 G~~~~~ 234 (661)
|+.+.+
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 987643
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=332.98 Aligned_cols=217 Identities=23% Similarity=0.284 Sum_probs=178.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~---- 76 (661)
+..+++++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++. ...+|+|.++|++..
T Consensus 9 ~~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 9 MDCKLDKIFYG------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred EEEEeEEEEeC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence 56677777653 256999999999999999999999999999999999998641 114899999998642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.++|++|++.++ .+||.||+.+....+. . ..+..++++++++.++|.+..+...+ ...+.|||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~q 156 (261)
T PRK14263 83 DPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQ 156 (261)
T ss_pred chHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHH
Confidence 1245699999999887 5899999998765431 1 23345678899999998653322221 234579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe--------CCeE
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS--------GGET 225 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~--------~G~~ 225 (661)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceE
Confidence 99999999999999999999999999999999999999964 79999999997 57889999999996 8999
Q ss_pred EEecCCCC
Q 045930 226 VYFGEAKS 233 (661)
Q Consensus 226 v~~G~~~~ 233 (661)
++.|+.++
T Consensus 235 ~~~g~~~~ 242 (261)
T PRK14263 235 VEMGPTAQ 242 (261)
T ss_pred EEeCCHHH
Confidence 99998653
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=324.42 Aligned_cols=200 Identities=24% Similarity=0.332 Sum_probs=174.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--DY 79 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~~ 79 (661)
.|+++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|++... .+
T Consensus 11 ~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 11 LLAAHALAFSRN------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRS 81 (214)
T ss_pred eEEEeeEEEecC------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhh
Confidence 478899998764 246999999999999999999999999999999999999874 8999999987532 23
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++|++.+++.+|++||+.+....+ .. ..++.++++++.++|.+..++.++ .||||||||++||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~lar 150 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKKRLALAR 150 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHHHHHHHHH
Confidence 46999999999999999999998875432 11 123457788999999888888775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
+++.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999988899999999997 589999999999864
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=332.02 Aligned_cols=210 Identities=26% Similarity=0.392 Sum_probs=168.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 73 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP---QKGQILIDGIDIRDISRK 73 (229)
T ss_pred eEEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEeHHHcCHH
Confidence 4789999998742 24599999999999999999999999999999999999987 48999999986421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI------GNWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSgG 150 (661)
.++.++|++|++.+++. ||+||+.+.... ... ..+++.++.+++.+..++.. -+..++.||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 143 (229)
T cd03254 74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQG 143 (229)
T ss_pred HHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHH
Confidence 24569999999988876 999999875311 111 22344444444443333221 01123579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+||++|+.+|++++|||||+|||+.++..+++.|++++ +|+|||++||++. ++ ..||++++|++|++++.|+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~ 220 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGT 220 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999996 4899999999974 55 4599999999999998887
Q ss_pred CC
Q 045930 231 AK 232 (661)
Q Consensus 231 ~~ 232 (661)
.+
T Consensus 221 ~~ 222 (229)
T cd03254 221 HD 222 (229)
T ss_pred HH
Confidence 54
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=333.11 Aligned_cols=197 Identities=28% Similarity=0.442 Sum_probs=171.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCCCCCCCCH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV 97 (661)
+|+|+|+++++||+++|+||||||||||+++|+|+.+. +|+|.++|++... .++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999742 7999999986431 13458999999888888999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh-------CCCEEEE
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT-------RPQLLFL 170 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~-------~P~lllL 170 (661)
+||+.+.... ....++..++++++++.+||.+..++.++ .||||||||++||++|+. +|++|+|
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999876321 12234446678999999999888888765 599999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+.++
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 219 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDE 219 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999987899999999996 57889999999999999999987543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=366.49 Aligned_cols=216 Identities=23% Similarity=0.310 Sum_probs=183.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECC--------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNG-------- 72 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g-------- 72 (661)
|+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~~ 71 (520)
T TIGR03269 1 IEVKNLTKKFD------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCGY 71 (520)
T ss_pred CEEEEEEEEEC------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEeccccccccc
Confidence 46889998874 256999999999999999999999999999999999996 45 489999872
Q ss_pred ---------------eec--------c-------cccCeEEEEecC-CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH
Q 045930 73 ---------------KKR--------R-------LDYGGVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV 121 (661)
Q Consensus 73 ---------------~~~--------~-------~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~ 121 (661)
.+. . ..++.++|++|+ +.+++.+||+||+.+..... ..+.++.+++
T Consensus 72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~ 148 (520)
T TIGR03269 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGR 148 (520)
T ss_pred cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 111 0 113569999997 67888999999999875432 2334555678
Q ss_pred HHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Q 045930 122 IEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTII 200 (661)
Q Consensus 122 v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi 200 (661)
++++++.+||++..++.++ +|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||
T Consensus 149 ~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi 223 (520)
T TIGR03269 149 AVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMV 223 (520)
T ss_pred HHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 9999999999988888775 59999999999999999999999999999999999999999999999764 99999
Q ss_pred EEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 201 SSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 201 ~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
+++|++ ..+.++||++++|++|++++.|++++..+
T Consensus 224 ivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 224 LTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred EEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 999997 57888999999999999999888765543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=375.28 Aligned_cols=218 Identities=31% Similarity=0.452 Sum_probs=182.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 471 ~I~~~nvsf~y~~----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 471 EIEFENVSFRYGP----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLA 543 (709)
T ss_pred eEEEEEEEEEeCC----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHH
Confidence 5799999999864 2246999999999999999999999999999999999999984 9999999998532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++++|||+||+.+|.. |++||+.++. | ..+.++..+.+... .++ ..+..-.||.+|+ +..+|||||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E-~G~~LSGGQrQ 616 (709)
T COG2274 544 SLRRQVGYVLQDPFLFSG-SIRENIALGN----P-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE-GGANLSGGQRQ 616 (709)
T ss_pred HHHhheeEEcccchhhcC-cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHHhccccccccccc-CCCCCCHHHHH
Confidence 36889999999999877 9999999763 2 23434433322211 111 2456677888886 34679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++|||||+++|+||+||||||+||+.+...+.+.|.++.+ |+|+|+++|.+ ...+.||+|++|++|+++.+|+.++
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccc--hHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999875 79999999997 4788999999999999999999876
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
..+
T Consensus 694 ll~ 696 (709)
T COG2274 694 LLA 696 (709)
T ss_pred HHH
Confidence 554
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=324.84 Aligned_cols=207 Identities=24% Similarity=0.331 Sum_probs=171.9
Q ss_pred EEEEEEEEEeecCCccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEEC--Ce--ecc-
Q 045930 3 LVWEEVTVVVPNFGSGP-TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN--GK--KRR- 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~--g~--~~~- 76 (661)
++++|+++.++....+. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++ |. +..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP---DSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEEEecCCCccchhh
Confidence 68899999885321111 24699999999999999999999999999999999999887 48999998 42 211
Q ss_pred --------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccccc
Q 045930 77 --------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGI 147 (661)
Q Consensus 77 --------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~L 147 (661)
..++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+||.+ ..++.+ ++|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP-----ATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc-----ccC
Confidence 01246999999999999999999998865432 2334445667889999999976 346655 469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999999999987799999999995 56778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=372.86 Aligned_cols=210 Identities=28% Similarity=0.447 Sum_probs=175.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+.. ++++|+|+|++++|||.+||+||||||||||+++|+|.+ | .+|+|.+||.+.+.
T Consensus 349 ~i~~~~vsf~~~~-----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p---~~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILSPD-----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P---YQGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEeccC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C---CCcEEEECCEecccCCHH
Confidence 4789999875532 356999999999999999999999999999999999999 6 38999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++|||.++. | +.++++ ++++++..++ .+-.||.+|+. ...|||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSG 488 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSV 488 (588)
T ss_pred HHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhcccccccccccC-CCCCCH
Confidence 25689999999999987 9999999862 1 344444 3444444443 44568888864 356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++ +..+.+|+|++|++|++++.|
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999986 479999999997 356779999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 566 ~~~eL 570 (588)
T PRK11174 566 DYAEL 570 (588)
T ss_pred CHHHH
Confidence 85543
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=335.30 Aligned_cols=215 Identities=24% Similarity=0.300 Sum_probs=177.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++..
T Consensus 20 ~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 20 VFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred eEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 4788999988742 46999999999999999999999999999999999997531 113799999997642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE----DCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||.||+.+....+ ... .+.++.+++.++.+++. +..++.+ ..||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 163 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKG-----TALS 163 (274)
T ss_pred chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCCc-----ccCC
Confidence 124579999999988875 9999998865432 111 12334567778888874 3344444 5699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-------
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS------- 221 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~------- 221 (661)
|||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999975 68999999997 57889999999998
Q ss_pred --CCeEEEecCCCCh
Q 045930 222 --GGETVYFGEAKSA 234 (661)
Q Consensus 222 --~G~~v~~G~~~~~ 234 (661)
+|++++.|++++.
T Consensus 242 ~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 242 KRRGKLVEFSPTEQM 256 (274)
T ss_pred ccCceEEEeCCHHHH
Confidence 8999999987654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=354.32 Aligned_cols=210 Identities=30% Similarity=0.471 Sum_probs=180.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----L 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~ 77 (661)
+..+|+++.+++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.++ .+|+|.+||.+.. .
T Consensus 321 i~~~~l~~~y~~-----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 321 ISLENLSFRYPD-----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred eeecceEEecCC-----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCccccccCHHH
Confidence 445688888764 34799999999999999999999999999999999999998 4999999998753 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccccccCHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED------CADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~------~~d~~vg~~~~~~LSgGe 151 (661)
.+++++||+|++.+++. |++||+.++.. +.++ +.+.+++++.||.+ -.|+.+|+ ..++|||||
T Consensus 393 ~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~----e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ 461 (559)
T COG4988 393 WRKQISWVSQNPYLFAG-TIRENILLARP-----DASD----EEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQ 461 (559)
T ss_pred HHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCH----HHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHH
Confidence 36889999999999987 99999998621 2333 34666777776654 45677775 447899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
+|||++||||+.+++++++||||++||.++...|++.|.+++++ +|||++||++ ....-+|+|++|++|++++.|..
T Consensus 462 ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCH
Confidence 99999999999999999999999999999999999999999985 9999999996 46677999999999999999987
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
++.
T Consensus 539 ~~L 541 (559)
T COG4988 539 EEL 541 (559)
T ss_pred HHH
Confidence 765
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=321.34 Aligned_cols=194 Identities=30% Similarity=0.392 Sum_probs=170.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
|+++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +|+|.++|.+... .
T Consensus 1 l~i~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERD------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeC------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHh
Confidence 46899998874 256999999999999999999999999999999999999874 8999999987421 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+.... . .+++++++++.+||.+..++.++ .||||||||++||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 137 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVA-----QLSAGQQRRVALA 137 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchh-----hCCHHHHHHHHHH
Confidence 45799999999999999999999875321 1 23567899999999988887764 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ .++...+|+++++
T Consensus 138 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 138 RLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc-hhhhhccceeEec
Confidence 999999999999999999999999999999999988899999999997 4688899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=326.94 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=172.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++ ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 7 ~i~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 7 LLQLQNVGYLAG------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDISTLKPE 77 (225)
T ss_pred eEEEeccEEeeC------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEcCcCCHH
Confidence 478999998874 25699999999999999999999999999999999999877 48999999986431
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++. ||+||+.+....+. .. ..+++++++++.+|+. ...++.++ .||||||||+
T Consensus 78 ~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrv 146 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNIA-----ELSGGEKQRI 146 (225)
T ss_pred HHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCcc-----cCCHHHHHHH
Confidence 23579999999888875 99999988654321 11 1235678899999996 46677664 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEecC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS-GGETVYFGE 230 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G~~v~~G~ 230 (661)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++ +++ ..||++++|+ ++..+..|.
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999999999999999875 89999999997 455 4699999995 554555554
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=334.01 Aligned_cols=215 Identities=23% Similarity=0.322 Sum_probs=177.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG--NVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++..
T Consensus 10 ~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 4789999988742 4699999999999999999999999999999999998752 1114899999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccccccC
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED----CADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~d~~vg~~~~~~LS 148 (661)
..++.++|++|++.+++. ||.||+.+....+ ... .+.+++++++++.+++.+ ..++.+ +.||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~~LS 153 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSG-----LSLS 153 (264)
T ss_pred cChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCc-----ccCC
Confidence 114569999999988874 9999998875432 111 233456777888888743 334443 4699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-------
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS------- 221 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~------- 221 (661)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+
T Consensus 154 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~ 231 (264)
T PRK14243 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGG 231 (264)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999976 58999999996 58999999999998
Q ss_pred --CCeEEEecCCCCh
Q 045930 222 --GGETVYFGEAKSA 234 (661)
Q Consensus 222 --~G~~v~~G~~~~~ 234 (661)
+|++++.|++++.
T Consensus 232 ~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 232 GRYGYLVEFDRTEKI 246 (264)
T ss_pred ccCceEEEeCCHHHH
Confidence 7999999986543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=364.88 Aligned_cols=223 Identities=25% Similarity=0.362 Sum_probs=186.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++. .+..+.+|+|+||++++||++||+|||||||||||++|+|.+++. ...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~~--~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQ--QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecC--CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 3789999998852 111357999999999999999999999999999999999998751 1248999999986421
Q ss_pred -------ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCcccc
Q 045930 78 -------DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED---CADRLIGNWHWR 145 (661)
Q Consensus 78 -------~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~d~~vg~~~~~ 145 (661)
.++.+||++|++. +.+.+||+|++.+..... ...+..+.+++++++++.+||.+ ..|+.++
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~----- 155 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPH----- 155 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCc-----
Confidence 1246999999974 677889999988654321 12345556778999999999976 3577664
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++ ..+..+||+|++|++|+
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~ 234 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGR 234 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999876 89999999997 57888999999999999
Q ss_pred EEEecCCCCh
Q 045930 225 TVYFGEAKSA 234 (661)
Q Consensus 225 ~v~~G~~~~~ 234 (661)
+++.|++++.
T Consensus 235 i~~~g~~~~~ 244 (529)
T PRK15134 235 CVEQNRAATL 244 (529)
T ss_pred EEEeCCHHHH
Confidence 9999986543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=313.34 Aligned_cols=169 Identities=31% Similarity=0.515 Sum_probs=153.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LD 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~ 78 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++.. ..
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccchHhh
Confidence 468899988742 4699999999999999999999999999999999999887 4899999998643 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||.||+. ||||||||++||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~la 107 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALA 107 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHH
Confidence 457999999999999999999873 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.+|++++|++|++
T Consensus 108 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 108 QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999999999988899999999997 578889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=365.34 Aligned_cols=219 Identities=21% Similarity=0.312 Sum_probs=183.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEEC-Cee---cc-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN-GKK---RR- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~-g~~---~~- 76 (661)
.|+++|+++.++.. .+..+.+|+|+||++++||+++|+||||||||||+++|+|++++ .+|+|.++ |.+ ..
T Consensus 279 ~l~~~~l~~~~~~~-~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 279 IIKVRNVSKRYISV-DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVNVRVGDEWVDMTK 354 (520)
T ss_pred eEEEeccEEEeccC-CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEecCCccccccc
Confidence 37899999987421 11235699999999999999999999999999999999999987 48999996 531 11
Q ss_pred -------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccccCccc
Q 045930 77 -------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-----CADRLIGNWHW 144 (661)
Q Consensus 77 -------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~d~~vg~~~~ 144 (661)
..++.++|++|++.+++.+||.||+.+...+. ...++.+++++++++.+||.+ ..++.++
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~---- 426 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPD---- 426 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChh----
Confidence 11346999999998999999999998764332 223334567889999999975 4567664
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+ .++.++||++++|++|
T Consensus 427 -~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 427 -ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDG 504 (520)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999999875 89999999997 5788999999999999
Q ss_pred eEEEecCCCCh
Q 045930 224 ETVYFGEAKSA 234 (661)
Q Consensus 224 ~~v~~G~~~~~ 234 (661)
++++.|+++++
T Consensus 505 ~i~~~g~~~~~ 515 (520)
T TIGR03269 505 KIVKIGDPEEI 515 (520)
T ss_pred EEEEECCHHHH
Confidence 99999876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=378.05 Aligned_cols=209 Identities=29% Similarity=0.387 Sum_probs=178.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|. +|+|.+||.+.+.
T Consensus 451 ~I~~~nvsf~Y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 451 AIEVDRVTFRYRP----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQ 523 (686)
T ss_pred eEEEEEEEEEcCC----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHH
Confidence 4789999999853 2357999999999999999999999999999999999999884 9999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.+|||+||+.+|+. |++||+.++. | .+. +++.++++..|+.+ -.||.+|+. ...|||
T Consensus 524 ~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~--~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSG 591 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSG-SIFENIAGGA----P--LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSG 591 (686)
T ss_pred HHHhccEEEccCCccCcc-cHHHHHhcCC----C--CCH----HHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCH
Confidence 25789999999999876 9999998752 1 233 34566666666654 457777754 367999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.+...+.+.|+++ ++|+|+++|++ +..+.+|+|++|++|++++.|
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999886 58999999997 356779999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 667 ~~~~L 671 (686)
T TIGR03797 667 TYDEL 671 (686)
T ss_pred CHHHH
Confidence 86654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=363.54 Aligned_cols=219 Identities=32% Similarity=0.492 Sum_probs=184.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+.++|++ +++.+||+|+|+.+++||.+||+|||||||||++++|.+.+.|. +|+|.+||.+.+.
T Consensus 350 ~ief~nV~FsYPs---Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~ 423 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPS---RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLK 423 (1228)
T ss_pred ceEEEEEEecCCC---CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchH
Confidence 4799999999985 34568999999999999999999999999999999999999984 9999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-H--HcCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI-T--EMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l-~--~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.+.+||.|.|+|.+|.. |++||+.|+- .+.+.++..+..+..- . ...|.+-.||.+|+..+ +|||||||
T Consensus 424 ~lr~~iglV~QePvlF~~-tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQ 496 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLFAT-TIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLSGGQKQ 496 (1228)
T ss_pred HHHhhcCeeeechhhhcc-cHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCChHHHH
Confidence 35789999999988765 9999999862 2345555444332221 1 13567788999998444 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++|||||+++|+|||||||||+||+.+...+.+.|.++. +|+|.|+++|+. +.+.+ +|+|++|++|++|+.|+.+|
T Consensus 497 RIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRL-StIrn-aD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 497 RIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRL-STIRN-ADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred HHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeeh-hhhhc-cCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999998875 489999999996 45665 99999999999999999887
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
...
T Consensus 574 Li~ 576 (1228)
T KOG0055|consen 574 LIA 576 (1228)
T ss_pred HHh
Confidence 654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=365.89 Aligned_cols=220 Identities=25% Similarity=0.355 Sum_probs=184.4
Q ss_pred EEEEEEEEEeecCCc-----ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc
Q 045930 3 LVWEEVTVVVPNFGS-----GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~ 77 (661)
|+++|+++.++.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++ .+|+|.++|++...
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~----~~G~i~~~g~~i~~ 351 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN----SQGEIWFDGQPLHN 351 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC----CCcEEEECCEEccc
Confidence 678999988752100 013569999999999999999999999999999999999984 28999999976421
Q ss_pred --------ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccc
Q 045930 78 --------DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRG 146 (661)
Q Consensus 78 --------~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 146 (661)
.++.++|++|++ .+++.+||+||+.+....+. ...+..+.+++++++++.+||. +..++.++ .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 425 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPA-----E 425 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCc-----c
Confidence 135699999996 47888999999998754321 1123444567789999999997 46787775 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++.++||++++|++|++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEV 504 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999999996 578899999999999999
Q ss_pred EEecCCCC
Q 045930 226 VYFGEAKS 233 (661)
Q Consensus 226 v~~G~~~~ 233 (661)
+..|++++
T Consensus 505 ~~~~~~~~ 512 (529)
T PRK15134 505 VEQGDCER 512 (529)
T ss_pred EEEcCHHH
Confidence 99987654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=363.21 Aligned_cols=221 Identities=23% Similarity=0.400 Sum_probs=183.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.++. +.++.+|+|+|+++++||+++|+||||||||||+|+|+|++++. .+|+|.++|++...
T Consensus 260 l~~~~l~~~~~~---~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 260 LEVRNLTAWDPV---NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR--WEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred EEEecCcccccc---ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCcEEEECCEECCCCCHHH
Confidence 678888876531 11356999999999999999999999999999999999998731 38999999986421
Q ss_pred -ccCeEEEEecCC---CCCCCCCHHHHHHHHHhcCCCC-C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHH
Q 045930 78 -DYGGVAYVTQEN---IMLGTLTVRETIAYSAHLRLPS-N-MNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~-~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgG 150 (661)
.++.++|++|++ .+++.+||.||+.+........ . ...++.+++++++++.+||. +..|+.++ .||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 409 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGG 409 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHH
Confidence 134699999985 4788999999998753211100 0 12334456789999999996 57788775 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+ +++.++||++++|++|+++..|+
T Consensus 410 ~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 410 NQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999988899999999996 57899999999999999999998
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
+++.
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 7653
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=320.83 Aligned_cols=198 Identities=29% Similarity=0.403 Sum_probs=170.4
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc--c
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL--D 78 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~--~ 78 (661)
|.++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .
T Consensus 1 m~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 1 MMLEGEDLACVRGG------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDV 71 (207)
T ss_pred CEEEEEeEEEEECC------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeCcchhh
Confidence 56899999998742 4699999999999999999999999999999999999887 48999999986432 3
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||+||+.+....+ ... .++++++++.+||.+..++.++ .||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPFG-----YLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCChh-----hcCHHHHHHHHHH
Confidence 456899999998889999999998765432 111 2357899999999887777765 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.. |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999999999999999999999999988899999999997 45655 88887743
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=372.20 Aligned_cols=213 Identities=28% Similarity=0.381 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|+++++||.+||+||||||||||+++|+|+++|. +|+|.+||.+.+.
T Consensus 341 ~i~~~~vsf~y~~----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 341 DIEFRNVTFTYPG----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLA 413 (582)
T ss_pred eEEEEEEEEecCC----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHH
Confidence 4899999998853 2357999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++||+.++. +...+++ +++++++..|+ .+-.||.+|+. .+.|||
T Consensus 414 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSG 483 (582)
T PRK11176 414 SLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSG 483 (582)
T ss_pred HHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCH
Confidence 25679999999999976 9999998752 1123333 35555555554 34468888864 367999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|++ +..+.||+|++|++|++++.|
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL--STIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999854 69999999997 467789999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 561 ~~~~l 565 (582)
T PRK11176 561 THAEL 565 (582)
T ss_pred CHHHH
Confidence 86543
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=331.07 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=178.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--ceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV--VMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~--~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++.- ..+|+|.++|.+..
T Consensus 16 ~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 16 KSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred eEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 4788999998752 469999999999999999999999999999999999986410 14899999986531
Q ss_pred ------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHcCCC----ccccccccCcccc
Q 045930 77 ------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMN-NEEITDVIEEAITEMGLE----DCADRLIGNWHWR 145 (661)
Q Consensus 77 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~----~~~d~~vg~~~~~ 145 (661)
..++.++|++|++.+++. ||+||+.+..... ... +...+++++++++.+++. +..++.+ .
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-----~ 160 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLA-----F 160 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc-----c
Confidence 124569999999988886 9999998875432 112 223346678888888874 3344444 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++
T Consensus 161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i 238 (265)
T PRK14252 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGEL 238 (265)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 6999999999999999999999999999999999999999999999976 68999999996 578899999999999999
Q ss_pred EEecCCCC
Q 045930 226 VYFGEAKS 233 (661)
Q Consensus 226 v~~G~~~~ 233 (661)
+..|+.++
T Consensus 239 ~~~g~~~~ 246 (265)
T PRK14252 239 IEFGATDT 246 (265)
T ss_pred EEeCCHHH
Confidence 99987543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=396.25 Aligned_cols=220 Identities=28% Similarity=0.381 Sum_probs=195.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.+++ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|++...
T Consensus 928 ~L~I~nLsK~y~~----~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 928 GVCVKNLVKIFEP----SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred eEEEEeEEEEecC----CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHH
Confidence 4788999988742 1367999999999999999999999999999999999999884 8999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||++.+|+.++ +|||||||||+|
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSV 1072 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999987764 23445566789999999999999998875 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTF 237 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 237 (661)
|+||+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++ +++..++||+++|++|+++..|++++.++.
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999995 599999999996 688899999999999999999998777654
Q ss_pred H
Q 045930 238 F 238 (661)
Q Consensus 238 f 238 (661)
|
T Consensus 1151 ~ 1151 (2272)
T TIGR01257 1151 F 1151 (2272)
T ss_pred c
Confidence 4
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=329.71 Aligned_cols=200 Identities=29% Similarity=0.444 Sum_probs=172.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|. ..
T Consensus 4 ~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~~~------~~ 68 (251)
T PRK09544 4 LVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNGK------LR 68 (251)
T ss_pred EEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCc------cC
Confidence 4789999998752 4699999999999999999999999999999999999987 4899999872 35
Q ss_pred EEEEecCCCCCCC--CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGT--LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~~l~~~--lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
++|++|++.+++. .|+.+++.+.. ... .+++.++++.+||.+..++.++ .||||||||++||+
T Consensus 69 i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~lar 133 (251)
T PRK09544 69 IGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQ-----KLSGGETQRVLLAR 133 (251)
T ss_pred EEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChh-----hCCHHHHHHHHHHH
Confidence 9999999877775 47887765321 111 2457889999999988888764 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+.||++++|++ +++..|++++
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~ 206 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEV 206 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHH
Confidence 999999999999999999999999999999999876 89999999997 578899999999965 7888887654
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=329.58 Aligned_cols=204 Identities=30% Similarity=0.442 Sum_probs=165.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhhhCCHHH
Confidence 468999988742 24699999999999999999999999999999999999887 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-----------CccccccccCccccc
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-----------EDCADRLIGNWHWRG 146 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~d~~vg~~~~~~ 146 (661)
.++.++|++|++.+++ .||+||+.+... ..+..+ +.+.++..++ +...++. ++.
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~~-----~~~ 137 (236)
T cd03253 73 LRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVGER-----GLK 137 (236)
T ss_pred HHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhhcC-----CCc
Confidence 2356999999998886 699999987532 112221 2233333333 3333333 357
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++. .||++++|++|+++
T Consensus 138 LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~ 214 (236)
T cd03253 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIV 214 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987 999999999974 554 49999999999999
Q ss_pred EecCCC
Q 045930 227 YFGEAK 232 (661)
Q Consensus 227 ~~G~~~ 232 (661)
+.|+.+
T Consensus 215 ~~~~~~ 220 (236)
T cd03253 215 ERGTHE 220 (236)
T ss_pred eeCCHH
Confidence 887754
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=322.87 Aligned_cols=208 Identities=20% Similarity=0.337 Sum_probs=169.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. ..+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~l~~~~l~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 2 DIEFKNVSLRYRP----NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDISKIGLH 74 (221)
T ss_pred cEEEEEEEEecCC----CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhHhCCHH
Confidence 4789999998752 124699999999999999999999999999999999999887 4899999998642
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccccccCHH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI------GNWHWRGISGG 150 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSgG 150 (661)
..++.++|++|++.+++ .||+||+.+.. ... .+++.+.++.+++.+..++.. -+..++.||||
T Consensus 75 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G 143 (221)
T cd03244 75 DLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG 143 (221)
T ss_pred HHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence 12467999999998776 59999986431 111 234566677777765443210 01234679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++. .||++++|++|++++.|+
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL-DTII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH-HHHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999865 68999999997 4555 499999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=317.02 Aligned_cols=187 Identities=27% Similarity=0.387 Sum_probs=159.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeeccc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRL--- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~--- 77 (661)
|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVG------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeC------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCH
Confidence 46899998874 246999999999999999999999999999999999984 45 48999999987531
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.+..++|++|++.+++.+|+++++. .. .+.||||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G~~qr 112 (200)
T cd03217 72 EERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGGEKKR 112 (200)
T ss_pred HHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHHHHHH
Confidence 1245999999998888888887760 01 13599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh-hcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA-LFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~-~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+ ++|++++|++|++++.|+.+
T Consensus 113 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~- 190 (200)
T cd03217 113 NEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE- 190 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-
Confidence 99999999999999999999999999999999999999877899999999974 6666 79999999999999999443
Q ss_pred hhHHHH
Q 045930 234 APTFFA 239 (661)
Q Consensus 234 ~~~~f~ 239 (661)
..+.+.
T Consensus 191 ~~~~~~ 196 (200)
T cd03217 191 LALEIE 196 (200)
T ss_pred HHhhhc
Confidence 444443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=314.06 Aligned_cols=216 Identities=28% Similarity=0.459 Sum_probs=191.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD---- 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~---- 78 (661)
++.+|++..+. ++.+|+|+|.++++|.+++|+|||||||||||.+++.+++.+ +|+|+++|......
T Consensus 2 I~i~nv~K~y~------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 2 ITIENVSKSYG------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKE 72 (252)
T ss_pred eeehhhhHhhC------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHH
Confidence 56788887764 378999999999999999999999999999999999998874 99999999875321
Q ss_pred -cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 79 -YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS--NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 79 -~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+.++..-|+..+...+||+|-+.|+ |.|. +...+|.+..+++.++.++|++..|+... +||||||||.
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FG---RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRA 144 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcC---CCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhh
Confidence 35678889999888999999999997 3343 33345667889999999999999999885 6999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
-||..++.+.+.++||||.++||...+.++|+.|++++++ |+||+++.||.+ ....++|+|+-|++|+++..|+++++
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999987 999999999974 78899999999999999999999876
Q ss_pred hH
Q 045930 235 PT 236 (661)
Q Consensus 235 ~~ 236 (661)
.+
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 53
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=316.38 Aligned_cols=193 Identities=27% Similarity=0.371 Sum_probs=164.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++... .
T Consensus 1 l~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRG------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEEC------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccchHHh
Confidence 46789998874 25699999999999999999999999999999999999887 48999999986421 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++.+||.||+.+....+. . + +++++++++.+||.+..++.++ .||||||||++||
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~-~-~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 139 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHG-----G-A-QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALA 139 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcC-----C-c-HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHH
Confidence 3579999999988898999999988654321 1 1 3467889999999988888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL 219 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l 219 (661)
++++.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++.. -.+|+++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 140 RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 99999999999999999999999999999999998889999999999742 23466653
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=367.39 Aligned_cols=210 Identities=23% Similarity=0.352 Sum_probs=180.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+.+.
T Consensus 340 ~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 340 RIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHS 411 (592)
T ss_pred eEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHH
Confidence 4889999998852 246999999999999999999999999999999999999984 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++|||.++. ..++ ++++++++..|+.+ -.||.+|+ ....|||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSG 479 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSV 479 (592)
T ss_pred HHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCH
Confidence 25789999999999987 9999999852 1222 34677777777654 35677765 2357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.+...+.+.|+++.+ ++|+|+++|++ +....||+|++|++|+++..|
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999865 69999999997 456679999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 557 ~~~~L 561 (592)
T PRK10790 557 THQQL 561 (592)
T ss_pred CHHHH
Confidence 87654
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=315.01 Aligned_cols=176 Identities=35% Similarity=0.508 Sum_probs=152.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-------ccCeEEEEecCCC-CC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-------DYGGVAYVTQENI-ML 92 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-------~~~~i~yv~Q~~~-l~ 92 (661)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... .++.++|++|++. .+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 5699999999999999999999999999999999999887 48999999986421 1356999999973 23
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
...||+||+.+..... ..+.++.+++++++++.+||.+..|+.++ .||||||||++||++|+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999999875432 23345556778999999999988888775 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999888999999999973
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.76 Aligned_cols=212 Identities=23% Similarity=0.372 Sum_probs=178.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++.+ +.+|+|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 266 l~~~~l~~~~--------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 266 FEVRNVTSRD--------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR---AGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEeCccccC--------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---CCCeEEECCEECCCCCHHH
Confidence 6677777531 2389999999999999999999999999999999999987 38999999976421
Q ss_pred -ccCeEEEEecC---CCCCCCCCHHHHHHHHHhcC---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCccccc
Q 045930 78 -DYGGVAYVTQE---NIMLGTLTVRETIAYSAHLR---LPS--N-MNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRG 146 (661)
Q Consensus 78 -~~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~ 146 (661)
.++.++|++|+ ..+++.+||+||+.+....+ ... . ....+.+++++++++.+||. +..++.++ .
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 409 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----E 409 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----c
Confidence 13569999998 46889999999998753221 000 0 12233345688999999997 77888876 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+ .++.++||++++|++|+++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988899999999997 5788999999999999999
Q ss_pred EecCC
Q 045930 227 YFGEA 231 (661)
Q Consensus 227 ~~G~~ 231 (661)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88865
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=346.42 Aligned_cols=215 Identities=25% Similarity=0.402 Sum_probs=193.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
-|+.+|++..++. .++|+||||++++||++||+|.||||||||+|+|+|.++++ +|+|.+||++...
T Consensus 8 ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 8 LLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPR 78 (500)
T ss_pred eeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHH
Confidence 4778999988863 67999999999999999999999999999999999999984 9999999997542
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
....|+.|.||..+.|+|||.||+.++...+.+ .-+.+++.+++..++|+.+|+....++++++ ||+||||.
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~ 153 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQM 153 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHH
Confidence 245799999999999999999999887554332 2356788889999999999996558888875 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|.||+||..+++++||||||+.|+...+..+.+.+++|+++|.+||++||.. +|++++||||.+|+||+.+..++.
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999999999999999999999999999999999999999995 799999999999999999998883
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=311.03 Aligned_cols=170 Identities=34% Similarity=0.492 Sum_probs=153.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +.+++|+|+++++||+++|+||||||||||+++|+|.+++ .+|+|.++|++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEECC------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchhH
Confidence 468899988742 5699999999999999999999999999999999999887 48999999986421
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.++.++|++|++.+++.+|++||+.+. ||||||||+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~ 109 (178)
T cd03229 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRV 109 (178)
T ss_pred HHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHH
Confidence 246799999999999899999987642 899999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+++|++++|++|+
T Consensus 110 ~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999999999999887 89999999996 57888999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=332.31 Aligned_cols=212 Identities=20% Similarity=0.314 Sum_probs=177.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++ . +|+|.++|.+...
T Consensus 2 ~i~~~nls~~~~~----~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 2 QMTVKDLTAKYTE----GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred eEEEEEEEEEeCC----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHH
Confidence 4789999999853 12469999999999999999999999999999999999986 2 7999999987421
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN------WHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSgG 150 (661)
.++.++|++|++.+++. ||+||+.... ..+. +.+.+.++.+||.+..++.++. ...+.||||
T Consensus 74 ~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G 142 (275)
T cd03289 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG 142 (275)
T ss_pred HHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence 24679999999999875 9999996321 1122 3467788889998766665532 123459999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. +++|||+++|++ ..+. .||+|++|++|++++.|+
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999999875 489999999997 4555 599999999999999999
Q ss_pred CCChh
Q 045930 231 AKSAP 235 (661)
Q Consensus 231 ~~~~~ 235 (661)
+++..
T Consensus 220 ~~~l~ 224 (275)
T cd03289 220 IQKLL 224 (275)
T ss_pred HHHHh
Confidence 87654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=347.49 Aligned_cols=196 Identities=25% Similarity=0.337 Sum_probs=170.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+|+|+||++++||+++|+|||||||||||++|+|+.++. +|+|.++|.+. ++.+...+.+.+||+|+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~--------~i~~~~~l~~~lTV~En 105 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA--------LIAISSGLNGQLTGIEN 105 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee--------eEEeccccCCCCcHHHH
Confidence 56999999999999999999999999999999999999874 89999999752 22234456778999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
+.+..... ..+.++..++++++++.+||.+..++.++ .||||||||++||+||+.+|++|+|||||+|||+.
T Consensus 106 L~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 106 IELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred HHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 98765432 23445556678899999999988888775 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 181 ~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999987899999999996 57889999999999999999998766543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=345.93 Aligned_cols=216 Identities=27% Similarity=0.469 Sum_probs=180.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.+. ++++||+++||+|++||-+||+|+|||||||+||+|.+.... +|+|.+||++.+.
T Consensus 351 ~I~F~dV~f~y~-----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 351 SIEFDDVHFSYG-----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSLE 421 (591)
T ss_pred cEEEEeeEEEeC-----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhChH
Confidence 478999999886 356799999999999999999999999999999999999873 8999999997532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.|+.|||||||..||.+ ||.+|+.|+.. ..+.++..+.++.. +++ ..+++-.+|.+|+. ...|||||||
T Consensus 422 SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer-G~~LSGGekQ 494 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEEVVEACKRAGLHDVISRLPDGYQTLVGER-GLMLSGGEKQ 494 (591)
T ss_pred HhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhc-ccccccchHH
Confidence 25779999999999877 99999998731 34555543333221 111 23456677788863 3569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+||||+++||+|+++|||||.||+.+..++++.+.+. ..|+|+|++.|+. ....-||+|++|++|++...|+-++
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~e 571 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSE 571 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHH
Confidence 999999999999999999999999999999999999993 3589999999995 5788899999999999999999777
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
.+.
T Consensus 572 ll~ 574 (591)
T KOG0057|consen 572 LLA 574 (591)
T ss_pred Hhh
Confidence 654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=376.68 Aligned_cols=211 Identities=27% Similarity=0.390 Sum_probs=177.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+.+.
T Consensus 477 ~I~~~~vsf~y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 477 YVELRNITFGYSP----LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPRE 549 (710)
T ss_pred eEEEEEEEEecCC----CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHH
Confidence 4789999999863 2357999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++||+.++. | ..+.+ ++.++++..|+.+ -.||.+|+. ...|||
T Consensus 550 ~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSG 618 (710)
T TIGR03796 550 VLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSG 618 (710)
T ss_pred HHHhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCH
Confidence 26789999999999876 9999998641 1 23333 3455566555543 457777753 367999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+||||||+||+.+...+.+.|++ .++|+|+++|+++ ....||+|++|++|++++.|
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999986 4899999999973 55679999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 694 ~~~~Ll 699 (710)
T TIGR03796 694 THEELW 699 (710)
T ss_pred CHHHHH
Confidence 976654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=333.66 Aligned_cols=222 Identities=25% Similarity=0.375 Sum_probs=177.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN--VVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~--~~~~G~i~~~g~~~~~-- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+|||||||||||++|+|++++. ...+|+|.++|.+...
T Consensus 45 ~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 45 KLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred eEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4788999988752 46999999999999999999999999999999999997520 0148999999986421
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccccCc
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP---------SNMN-NEEITDVIEEAITEMGLEDCADRLIGNW 142 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 142 (661)
.++.++|++|++.+++. ||+||+.+....+.. .... .+..+++++++++.+++.+..+... +.
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 196 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DD 196 (305)
T ss_pred ccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cC
Confidence 13579999999988874 999999987542100 0011 1233567889999998853222211 11
Q ss_pred cccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE-EEEe
Q 045930 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL-FLLS 221 (661)
Q Consensus 143 ~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v-~lL~ 221 (661)
.++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ ..+.++||++ ++|+
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVFLT 274 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEEec
Confidence 2357999999999999999999999999999999999999999999999987 48999999997 5788999997 5779
Q ss_pred CCeEEEecCCCC
Q 045930 222 GGETVYFGEAKS 233 (661)
Q Consensus 222 ~G~~v~~G~~~~ 233 (661)
+|++++.|++++
T Consensus 275 ~G~i~~~g~~~~ 286 (305)
T PRK14264 275 GGELVEYDDTDK 286 (305)
T ss_pred CCEEEEeCCHHH
Confidence 999999987543
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=365.49 Aligned_cols=217 Identities=31% Similarity=0.488 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.++. ++++|+|+|++++|||.+||+||||||||||+|.|.|++++ .+|+|.+||.+.+.
T Consensus 328 ~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 328 SIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISLD 399 (567)
T ss_pred eEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCHH
Confidence 4789999999863 46799999999999999999999999999999999999988 49999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++||+||+.+|. -||+||+.++.. +.++++..+.++.+ +++ ..+.+..||.+|+ ....|||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge-~G~~LSgGQrQ 472 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQRQ 472 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceecC-CCccCCHHHHH
Confidence 2578999999999998 599999998732 24555554444433 222 1345578999984 34579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++||||++++|++|+||||||+||+.+...+.+.++++. +|+|+|+++|.++ .+.. +|+|++|++|++++.|+.++
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999887 5689999999984 4555 99999999999999999776
Q ss_pred hhH
Q 045930 234 APT 236 (661)
Q Consensus 234 ~~~ 236 (661)
...
T Consensus 550 Ll~ 552 (567)
T COG1132 550 LLA 552 (567)
T ss_pred HHH
Confidence 543
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=322.16 Aligned_cols=196 Identities=27% Similarity=0.466 Sum_probs=165.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCC--CCCCHHHHHHHHHh
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML--GTLTVRETIAYSAH 106 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~ 106 (661)
+++++||+++|+||||||||||+++|+|..++. +|+|.++|++....++.++|++|++.++ ..+||.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468999999999999999999999999998874 8999999987543346799999998764 34799999987532
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 045930 107 LRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185 (661)
Q Consensus 107 l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i 185 (661)
.... ......+.+++++++++.+|+++..++.++ +||||||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 001122334568899999999988888775 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 186 VKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 186 ~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
.+.|++++++|+|||+++|++ .++.++||+++++ +|++++.|+.++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 999999987899999999996 5788999999999 8999999987653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=310.43 Aligned_cols=170 Identities=26% Similarity=0.447 Sum_probs=151.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+ +|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHH
Confidence 36778887643 899999999999999999999999999999999999874 8999999986431
Q ss_pred --ccCeEEEEecCC---CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 78 --DYGGVAYVTQEN---IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 --~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
.++.++|++|++ .+++.+|++||+.+... ||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~ 110 (182)
T cd03215 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQ 110 (182)
T ss_pred HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHH
Confidence 245799999984 57888999999976421 899999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++
T Consensus 111 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 111 QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999987789999999996 578999999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=305.42 Aligned_cols=215 Identities=24% Similarity=0.370 Sum_probs=187.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
|+.+||...+. ...+|++||++.++|+++.|+|.|||||||+|+||.-+.+|. .|+|.+||+...
T Consensus 7 l~v~dlHK~~G------~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 7 LEVEDLHKRYG------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred eehhHHHhhcc------cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCC
Confidence 45556655443 367999999999999999999999999999999999988884 899999997531
Q ss_pred ------------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 045930 77 ------------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144 (661)
Q Consensus 77 ------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 144 (661)
..+.+.++|+|..++.+.+||.||+.-+..-- -+.++.+..++.+..|..+||.+.+|.++.
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~---- 151 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPA---- 151 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCcc----
Confidence 01345899999999999999999997653211 146788888999999999999999998765
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
.|||||+||++|||||+.+|+++++|||||.|||.-.-++++.+++||++|+|.+++||.. ....+...+|+.|.+|.
T Consensus 152 -~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 152 -HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred -ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 5999999999999999999999999999999999999999999999999999999999996 57888999999999999
Q ss_pred EEEecCCCCh
Q 045930 225 TVYFGEAKSA 234 (661)
Q Consensus 225 ~v~~G~~~~~ 234 (661)
+-+.|+|+++
T Consensus 230 iEE~G~P~qv 239 (256)
T COG4598 230 IEEEGPPEQV 239 (256)
T ss_pred ecccCChHHH
Confidence 9999998653
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=365.20 Aligned_cols=212 Identities=29% Similarity=0.495 Sum_probs=180.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ .++.+|+|+|++++|||.+||+||||||||||+++|+|.+++. +|+|.+||.+.+.
T Consensus 338 ~i~~~~v~f~y~~----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 338 SLTLNNVSFTYPD----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEA 410 (574)
T ss_pred eEEEEEEEEECCC----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHH
Confidence 4899999998853 1246999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC------ADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~------~d~~vg~~~~~~LSgG 150 (661)
.++.++||+|++.+|+. |++||+.++. | ..+ ++.+.++++..++.+. .||.+|+. .+.||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgG 479 (574)
T PRK11160 411 ALRQAISVVSQRVHLFSA-TLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGG 479 (574)
T ss_pred HHHhheeEEcccchhhcc-cHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHH
Confidence 25679999999999876 9999998753 1 122 2456778888888654 46777653 4679999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +++|+|+++|+++ . ...+|+|++|++|++++.|+
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~-~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-G-LEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-H-HHhCCEEEEEeCCeEEEeCC
Confidence 9999999999999999999999999999999999999999986 4899999999984 3 45699999999999999998
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
.++.
T Consensus 557 ~~~l 560 (574)
T PRK11160 557 HQEL 560 (574)
T ss_pred HHHH
Confidence 6544
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=324.40 Aligned_cols=204 Identities=30% Similarity=0.443 Sum_probs=168.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. +..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++..
T Consensus 11 ~l~~~~l~~~~~~---~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 11 IVKFQNVTFAYPT---RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVLLDGKPISQYEHK 84 (226)
T ss_pred eEEEEEEEEEeCC---CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCCchHHcCHH
Confidence 4789999998853 1124699999999999999999999999999999999999887 4899999997642
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccccccCH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE-----ITDVIEEAITEM--GLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSg 149 (661)
..++.++|++|++.+++ .||+||+.+.... ....+ .+..++++++.+ |+++..++.+ +.|||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LSg 153 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS-----CSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQLSG 153 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCC-----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCCH
Confidence 12356999999998876 5999999875321 11111 112356778888 7877666665 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++. .||++++|++|++
T Consensus 154 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 154 GQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999876 689999999974 564 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=357.53 Aligned_cols=220 Identities=27% Similarity=0.414 Sum_probs=182.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+.. +.++.+|+|+||++++||+++|+|||||||||||++|+|..+|. .+|+|.++|++...
T Consensus 257 ~l~~~~l~~~~~~---~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 257 ILEARNLTCWDVI---NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPA 331 (500)
T ss_pred eEEEeCCcccccc---cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHH
Confidence 3678888875421 11246999999999999999999999999999999999998741 38999999986421
Q ss_pred --ccCeEEEEecCC---CCCCCCCHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCH
Q 045930 78 --DYGGVAYVTQEN---IMLGTLTVRETIAYSAH--LRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 --~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~--l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|+. .+++.+||+||+.+... ..........+.+++++++++.++|.+ ..|+.++ .|||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 406 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSG 406 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCH
Confidence 135699999995 58899999999987532 110001223444567899999999974 5788775 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++|||+ +++.++||++++|++|+++..+
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999997 5889999999999999999877
Q ss_pred CCC
Q 045930 230 EAK 232 (661)
Q Consensus 230 ~~~ 232 (661)
+.+
T Consensus 486 ~~~ 488 (500)
T TIGR02633 486 VNH 488 (500)
T ss_pred ccc
Confidence 654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=307.02 Aligned_cols=232 Identities=27% Similarity=0.422 Sum_probs=202.6
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
+.|+++||.+++.. .++||++||++|++||+.+||||||||||||.++|+|.-... .++|+|+++|++..
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccccCCH
Confidence 46899999999863 158999999999999999999999999999999999986543 36899999998752
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerq 153 (661)
..+..+...+|.|.-+|..|+.+.|..+.+.+........+..+++++.++.+++++ .+++.+.. |+||||||
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkK 151 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKK 151 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHH
Confidence 235678999999999999999999998876543211113466788999999999987 78888864 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc--CeEEEEeCCeEEEecCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF--DDLFLLSGGETVYFGEA 231 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~--D~v~lL~~G~~v~~G~~ 231 (661)
|..|+..++.+|++.+||||-||||..+-..+-+.++.++.+|.+++++||.. .+.++. |++.+|.+|+|+..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999999999999999995 677776 99999999999999999
Q ss_pred CChhHHHHhcCCCC
Q 045930 232 KSAPTFFAEAGFPC 245 (661)
Q Consensus 232 ~~~~~~f~~~g~~~ 245 (661)
+..+++++-||.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 7888888888865
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=373.55 Aligned_cols=212 Identities=32% Similarity=0.471 Sum_probs=176.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ .+++.+|+|+|++++|||.+||+||||||||||+|+|+|.+++. +|+|.+||.+.+.
T Consensus 478 ~I~~~nVsf~Y~~---~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 478 LIEFQDVSFSYPN---RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHH 551 (711)
T ss_pred eEEEEEEEEECCC---CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHH
Confidence 4899999999863 12357999999999999999999999999999999999999884 8999999998532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++|||.++.. ..++ +.+.++++..++.+ -.||.+|+. ...|||
T Consensus 552 ~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSG 620 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSG-SVRENIAYGLT-----DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSG 620 (711)
T ss_pred HHHhhceEEecCcccccc-CHHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCH
Confidence 25679999999999875 99999987521 2232 34566666666543 357777753 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMG 695 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999998888 22 235899999999973 56779999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 696 t~~eL~ 701 (711)
T TIGR00958 696 THKQLM 701 (711)
T ss_pred CHHHHH
Confidence 976543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=356.56 Aligned_cols=204 Identities=21% Similarity=0.335 Sum_probs=174.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------ccCeEEEEecCC---CCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DYGGVAYVTQEN---IML 92 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~~~i~yv~Q~~---~l~ 92 (661)
.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++... .++.++|++|++ .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR---TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC---CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 489999999999999999999999999999999999987 48999999986431 135799999986 488
Q ss_pred CCCCHHHHHHHHHhcCC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEE
Q 045930 93 GTLTVRETIAYSAHLRL-PSN--MNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLL 168 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ll 168 (661)
+.+||.||+.+...... +.. ....+.++.++++++.+|+. +..++.++ .|||||||||+||++|+.+|++|
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEE
Confidence 99999999987532110 001 12233345788999999994 67888886 49999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 169 FLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 169 lLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||||||+|||+.++..+++.|++++++|.|||++|||+ .++.++||++++|++|++++.|+++++
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999998899999999996 689999999999999999999987653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=354.43 Aligned_cols=204 Identities=24% Similarity=0.416 Sum_probs=175.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------ccCeEEEEecCC---CCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DYGGVAYVTQEN---IML 92 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~~~i~yv~Q~~---~l~ 92 (661)
.+|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|++... .++.+||++|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 3799999999999999999999999999999999999874 8999999976421 135699999995 578
Q ss_pred CCCCHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEE
Q 045930 93 GTLTVRETIAYSAHLRLP---SNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLL 168 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ll 168 (661)
+.+||.||+.+....... .....++.+++++++++.+||. +..|+.++ .|||||||||+||++|+.+|++|
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEE
Confidence 899999999875321100 0122334456789999999995 67888775 59999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 169 FLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 169 lLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||||||+|||+.++..+.+.|++++++|+|||++||++ .++.++||++++|++|+++..|+++++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999988899999999997 588999999999999999999988765
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=357.26 Aligned_cols=206 Identities=24% Similarity=0.244 Sum_probs=177.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. +.+|+|+|+++++||+++|+||||||||||||+|+|++++ .+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p---~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL---LSGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCceEEECCcccccCCHH
Confidence 4889999998742 4599999999999999999999999999999999999887 48999998865321
Q ss_pred -ccCeEEEEecCCCC--C------CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 78 -DYGGVAYVTQENIM--L------GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l--~------~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
.++.++|++|++.. + ..+||+|++.+. .+.+++++++++.+||.+..|+.++ +||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 137 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK-----YLS 137 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc-----cCC
Confidence 12459999998642 1 147888887531 1234578899999999988888875 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988899999999997 578899999999999999999
Q ss_pred cCCCC
Q 045930 229 GEAKS 233 (661)
Q Consensus 229 G~~~~ 233 (661)
|++++
T Consensus 217 ~~~~~ 221 (490)
T PRK10938 217 GEREE 221 (490)
T ss_pred CCHHH
Confidence 87654
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=312.62 Aligned_cols=192 Identities=23% Similarity=0.301 Sum_probs=164.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----D 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~ 78 (661)
|.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|++... .
T Consensus 2 l~~~~l~~~~~------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYH------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeC------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCCccccCHHHH
Confidence 78999999874 25699999999999999999999999999999999999987 48999999986431 2
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|+..+++.+||+||+.+..... .. +..++++++.+++.+..++.++ .||||||||++||
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~la 139 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALL 139 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHH
Confidence 467999999998889999999998864321 11 2468899999999887777765 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
++++.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ..+.+|...
T Consensus 140 ral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999878999999999963 445576543
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=305.87 Aligned_cols=168 Identities=32% Similarity=0.508 Sum_probs=149.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ..+.+++|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPG----AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCC----CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHH
Confidence 468899988752 1246999999999999999999999999999999999999874 8999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++. ||+||+ ||||||||++|
T Consensus 74 ~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~l 107 (173)
T cd03246 74 LGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLGL 107 (173)
T ss_pred HHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHHH
Confidence 24579999999988874 999886 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+ +.||++++|++|++
T Consensus 108 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999999999987899999999997 355 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=307.64 Aligned_cols=174 Identities=28% Similarity=0.470 Sum_probs=152.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----LD 78 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----~~ 78 (661)
++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ..
T Consensus 1 i~~~~~~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPE----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCC----CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEEHHHHHHHH
Confidence 478999998753 123699999999999999999999999999999999999887 4899999998642 12
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++|++.+++ .||+||+ + ..||||||||++||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~-----~~LS~G~~qrv~la 110 (178)
T cd03247 74 SSLISVLNQRPYLFD-TTLRNNL-------------------------------------G-----RRFSGGERQRLALA 110 (178)
T ss_pred HhhEEEEccCCeeec-ccHHHhh-------------------------------------c-----ccCCHHHHHHHHHH
Confidence 457999999988776 6999887 1 35999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++++.+|++++|||||+|||+.++..+++.|++++ +++|||+++|++. ++ ..+|++++|++|++++.|
T Consensus 111 ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 111 RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999996 4899999999974 55 469999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=371.72 Aligned_cols=212 Identities=27% Similarity=0.349 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. ++++|+|+|++++|||.+||+||||||||||+++|+|+++|. +|+|.+||.+.+
T Consensus 473 ~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHH
Confidence 4789999998852 356999999999999999999999999999999999999884 899999998753
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
..++.+|||+|++.+|+. |++||+.+... + ..+.++ +.++++..|+. +-.||.+|+. ...|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e~-G~~LSg 614 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEE-GSSISG 614 (708)
T ss_pred HHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHHH----HHHHHHHhCCHHHHHhcccccCcEecCC-CCCCCH
Confidence 225789999999999977 99999987531 1 233333 44555555543 3457888763 367999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||||++++|++|+||||||+||+.+...+.+.|+++ +|+|+|+++|+++ ..+.+|+|++|++|++++.|
T Consensus 615 GQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 615 GQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999985 4799999999973 56789999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 691 ~~~~L~ 696 (708)
T TIGR01193 691 SHDELL 696 (708)
T ss_pred CHHHHH
Confidence 866543
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=368.49 Aligned_cols=213 Identities=31% Similarity=0.473 Sum_probs=179.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|++++|||.+||+||||||||||+|+|+|++++. +|+|.+||.+.+.
T Consensus 463 ~I~~~~vsf~Y~~----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 463 EIEFRNVSFAYPG----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPA 535 (694)
T ss_pred eEEEEEEEEEeCC----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHH
Confidence 4789999999863 2356999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. |++||+.+.. | ..+.++ +.++++..|+ .+-.||.+|+. ...|||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSg 604 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSG 604 (694)
T ss_pred HHHhccEEECCChhhhhh-hHHHHHhCCC----C-CCCHHH----HHHHHHHcChHHHHHhCcccccceecCC-CCCCCH
Confidence 25789999999999986 9999998752 1 233433 4555555554 34567888763 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADG 681 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999999999999999864 799999999973 56789999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 682 ~~~eLl 687 (694)
T TIGR03375 682 PKDQVL 687 (694)
T ss_pred CHHHHH
Confidence 866543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=344.27 Aligned_cols=214 Identities=29% Similarity=0.443 Sum_probs=182.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++++++ +..++|+|+|+++++||.+||+|+||||||||++.|+|-++++ +|+|.+||.+...
T Consensus 336 ~l~~~~vsF~y~~----~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~ 408 (573)
T COG4987 336 ALELRNVSFTYPG----QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408 (573)
T ss_pred eeeeccceeecCC----CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChh
Confidence 3789999999975 3457999999999999999999999999999999999999884 9999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSg 149 (661)
.++.+++++|...+|.+ |+|+||..+. | +.+++ .+.++++++||++. .|+.+|+ ..+.|||
T Consensus 409 ~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSG 477 (573)
T COG4987 409 ALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSG 477 (573)
T ss_pred hHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCc
Confidence 24579999999998887 9999998763 2 23444 46677788887654 4556765 3478999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+.. -.+.||+|++|++|++++.|
T Consensus 478 GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~Gkiie~G 554 (573)
T COG4987 478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEG 554 (573)
T ss_pred hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEECCeeeecC
Confidence 999999999999999999999999999999999999999988776 899999999964 46789999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
...+..+
T Consensus 555 ~~~~Ll~ 561 (573)
T COG4987 555 THAELLA 561 (573)
T ss_pred CHHhhhc
Confidence 8776543
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=311.10 Aligned_cols=197 Identities=21% Similarity=0.336 Sum_probs=162.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.++ .+|+|.++|.+..
T Consensus 6 ~l~~~~l~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 6 EIEVENLSVRYAP----DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGIDISTIPLE 78 (207)
T ss_pred eEEEEEEEEEeCC----CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEhHHCCHH
Confidence 4788999998752 124699999999999999999999999999999999999887 4899999998642
Q ss_pred cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 77 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
..++.++|++|++.+++ .||+||+.+.. ....+ .+.+.++ .++. ++.||||||||++
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~-------~~~~-----~~~LS~G~~qrv~ 135 (207)
T cd03369 79 DLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR-------VSEG-----GLNLSQGQRQLLC 135 (207)
T ss_pred HHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh-------ccCC-----CCcCCHHHHHHHH
Confidence 12457999999998877 49999996531 11221 2333333 2232 3579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|+++|++. ++.. +|++++|++|+++..|++
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999999999999985 4899999999974 5554 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=320.09 Aligned_cols=192 Identities=29% Similarity=0.455 Sum_probs=172.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec---------ccccCeEEEEecCCCCCCCCC
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR---------RLDYGGVAYVTQENIMLGTLT 96 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~---------~~~~~~i~yv~Q~~~l~~~lT 96 (661)
++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||... ...++++|||+||-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888775799999999999999999999999985 89999999742 123578999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
|+.||.|+...- .....+++.+.+|+++..++++. .|||||||||+|||||+++|++|+||||.+.
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 23457889999999999999886 4999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 177 LDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||-....+++-.|++|+++ +..|+.+||.+ +|+.+++|+|++|++|++..+|+.+++.
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHh
Confidence 9999999999999999987 88999999996 7999999999999999999999977654
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=323.38 Aligned_cols=210 Identities=20% Similarity=0.317 Sum_probs=166.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|++++|||+++|+|+||||||||+++|+|++++ .+|+|.++|++...
T Consensus 19 ~i~~~~l~~~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 19 EIKIHDLCVRYEN----NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDISKLPLH 91 (257)
T ss_pred eEEEEEEEEEeCC----CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhhhCCHH
Confidence 4789999998753 124699999999999999999999999999999999999887 48999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL-------IGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~-------vg~~~~~~LSg 149 (661)
.++.++|++|++.+++. ||+||+.... .... ..+.++++..++.+..+.. ++ ...+.|||
T Consensus 92 ~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 92 TLRSRLSIILQDPILFSG-SIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHhhhEEEECCCCccccc-HHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEec-cCCCcCCH
Confidence 24679999999988764 9999985321 1111 1233333333443322222 11 12357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.. +|++++|++|+++..|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999975 4899999999974 5554 9999999999999998
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
++++
T Consensus 237 ~~~~ 240 (257)
T cd03288 237 TPEN 240 (257)
T ss_pred CHHH
Confidence 8654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=360.53 Aligned_cols=210 Identities=28% Similarity=0.459 Sum_probs=176.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|. +|+|.+||.+...
T Consensus 334 ~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHH
Confidence 4789999998852 245999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. |++||+.++. | ..++++ +.++++..|+. +-.|+.+|+. .+.|||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~-g~~LSg 474 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGER-GRQLSG 474 (588)
T ss_pred HHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCC-CCCCCH
Confidence 25779999999999876 9999998752 1 233333 44555555543 3457777653 356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+|+++|++++||||||+||+.++..+.+.|+++.+ ++|+|++||++ ...+.+|++++|++|+++..|
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRL--STVRNADRILVFDNGRVVESG 551 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecH--HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998854 79999999997 356789999999999999999
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
+.++
T Consensus 552 ~~~~ 555 (588)
T PRK13657 552 SFDE 555 (588)
T ss_pred CHHH
Confidence 8544
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=357.91 Aligned_cols=215 Identities=31% Similarity=0.495 Sum_probs=175.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|++++|||.++|+||||||||||+++|+|.+++. +|+|.+||.+...
T Consensus 316 ~i~~~~v~~~y~~----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 316 HLSVENVTIVPPG----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRE 388 (544)
T ss_pred eEEEEEEEEEcCC----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHH
Confidence 4889999998853 1357999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV-----IEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++||+|++.+++. |++||+.+.. + ..+.++..+. .++.++.+ .+-.|+.+|+ ..+.|||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq 459 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPG-TVAENIARFG----E-NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQ 459 (544)
T ss_pred HHhhheEEecCCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHH
Confidence 25679999999999986 9999998532 1 2333332221 12333332 2334666664 346799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||++|||||+++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||++++|++|++++.|+.
T Consensus 460 ~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 460 RQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGER 537 (544)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCH
Confidence 99999999999999999999999999999999999999999767899999999973 5578999999999999999986
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
++.
T Consensus 538 ~~l 540 (544)
T TIGR01842 538 DEV 540 (544)
T ss_pred HHH
Confidence 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=359.76 Aligned_cols=213 Identities=29% Similarity=0.411 Sum_probs=179.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|+++++||.++|+|+||||||||+++|+|++++. +|+|.+||.+.+.
T Consensus 330 ~i~~~~v~f~y~~----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 330 DVEFRNVTFRYPG----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLA 402 (571)
T ss_pred eEEEEEEEEEcCC----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHH
Confidence 4889999999853 1356999999999999999999999999999999999999884 8999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++. |++|||.+.. +...+. ++++++++.+|+. +-.||.+|+. .+.|||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSg 472 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSG 472 (571)
T ss_pred HHHhhceEEccCcccccc-cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCH
Confidence 24679999999998876 9999998752 112333 3466667776654 3457778764 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+++++|++++||||||+||+.++..+++.|+++++ ++|+|++||++ ...+.||+|++|++|+++..|
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRL--STIEKADRIVVMDDGRIVERG 549 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999999999999999854 69999999997 467889999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 550 ~~~~l 554 (571)
T TIGR02203 550 THNEL 554 (571)
T ss_pred CHHHH
Confidence 86543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=310.51 Aligned_cols=196 Identities=28% Similarity=0.426 Sum_probs=154.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++.. ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++| .+
T Consensus 1 l~~~~l~~~~~~~-~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~~~g--------~i 68 (204)
T cd03250 1 ISVEDASFTWDSG-EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK---LSGSVSVPG--------SI 68 (204)
T ss_pred CEEeEEEEecCCC-CccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEEEcC--------EE
Confidence 4689999987531 00013699999999999999999999999999999999999887 489999998 59
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccccccCHHHHHHH
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD-------RLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~LSgGerqRv 155 (661)
+|++|++.++ ..||+||+.+.... ..+ ...+.++.+++.+..+ +... ...+.||||||||+
T Consensus 69 ~~~~q~~~l~-~~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv 136 (204)
T cd03250 69 AYVSQEPWIQ-NGTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRI 136 (204)
T ss_pred EEEecCchhc-cCcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHH
Confidence 9999999887 46999999875321 111 2233334444332221 1121 12357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+||++|+.+|++++|||||+|||+.++..+.+ .+++++++|+|||+++|++ ..+.. +|++++|++|+
T Consensus 137 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 99999999999999999999999999999998 5677766789999999997 45666 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=351.71 Aligned_cols=202 Identities=21% Similarity=0.315 Sum_probs=171.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------ccCeEEEEecCC---CCCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DYGGVAYVTQEN---IMLG 93 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~~~i~yv~Q~~---~l~~ 93 (661)
+|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|++... .++.++|++|++ .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999998874 8999999986431 134699999984 4788
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
.+||.|++......+.+......+.+++++++++.+||+ +..|+.++ .|||||||||+||++|+.+|++|||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986431111111111223345688999999997 67888775 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+|||+.++..+.+.|++++++|.|||+++||+ .++.++||++++|++|++++.|++++
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999988899999999997 58999999999999999999887754
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=331.01 Aligned_cols=214 Identities=29% Similarity=0.376 Sum_probs=193.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++.++++..++ ...+++|||+++++||+.||+|.||||||||+++|.|.++|+ +|+|.++|++...
T Consensus 4 ~l~~~~itK~f~------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 4 ALEMRGITKRFP------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPR 74 (501)
T ss_pred eEEEeccEEEcC------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHH
Confidence 478899998886 367999999999999999999999999999999999999995 9999999998542
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv 155 (661)
.+..||+|.|+..|++++||.||+..+..-......+.++.+++++++.+++||.=-.|.++++ ||-||||||
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRV 149 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRV 149 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHH
Confidence 2467999999999999999999999886532222356778889999999999999888998875 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
.|-++|..+|++|||||||+-|-|..+.++++.|++++++|+|||++||.. .|+.++|||+.+|.+|+++-.-+
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999996 69999999999999999886665
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=288.96 Aligned_cols=215 Identities=26% Similarity=0.356 Sum_probs=189.6
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc----
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---- 76 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---- 76 (661)
|.+..+++++.|.. ..+|.||+++.+.||.+.++||||||||||++.|.=+..| .+|+..+.|...+
T Consensus 1 msirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p---~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 1 MSIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKT 71 (242)
T ss_pred CceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC---CCCeEEecccccccccC
Confidence 67888999887753 5689999999999999999999999999999999877666 3899888775421
Q ss_pred -------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 77 -------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 -------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
..++.+|+|+|+-.+.|.|||.||+.-+. ++. .++++++.+.+..++++.+.|.+.+|+.. -.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----eeccc
Confidence 12567999999999999999999997653 221 25778888899999999999999999976 35999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||+|||+|||||+.+|++|++||||+.|||.-..++++++++|+..|.|=+++||.. ....+.+.+|+.|.+|++|+.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeec
Confidence 999999999999999999999999999999999999999999999999999999996 4677889999999999999999
Q ss_pred CCC
Q 045930 230 EAK 232 (661)
Q Consensus 230 ~~~ 232 (661)
+.+
T Consensus 224 ~a~ 226 (242)
T COG4161 224 DAS 226 (242)
T ss_pred chh
Confidence 864
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=305.91 Aligned_cols=174 Identities=36% Similarity=0.574 Sum_probs=150.2
Q ss_pred EEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----c
Q 045930 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----D 78 (661)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~ 78 (661)
+++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|.+... .
T Consensus 1 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~ 71 (180)
T cd03214 1 EVENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKEL 71 (180)
T ss_pred CeeEEEEEECC------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHH
Confidence 46888887742 46999999999999999999999999999999999998874 8999999986421 1
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.++|++| +++.+||.+..++.+ +.||||||||++||
T Consensus 72 ~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la 109 (180)
T cd03214 72 ARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLA 109 (180)
T ss_pred HHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHH
Confidence 123555555 667788877666665 45999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+++|++++|++|++++.|
T Consensus 110 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999876 89999999997 4778999999999999988654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=330.96 Aligned_cols=184 Identities=30% Similarity=0.494 Sum_probs=163.5
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCH
Q 045930 39 VMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN 115 (661)
Q Consensus 39 I~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~ 115 (661)
|+|||||||||||++|+|+.++. +|+|.++|++... .++.++|++|++.+++.+||+||+.|..+.+ ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 68999999999999999999874 8999999987532 2467999999999999999999999986542 2344
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 045930 116 EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195 (661)
Q Consensus 116 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~ 195 (661)
++.+++++++++.+||.+..|+.+. +|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 5556789999999999998888774 59999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 196 -GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 196 -g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+|||++||++ .++..+||++++|++|+++..|++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEI 188 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 89999999996 578999999999999999999987654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=364.35 Aligned_cols=212 Identities=26% Similarity=0.437 Sum_probs=176.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|++++|||.+||+|+||||||||+|+|+|++++. +|+|.+||.+.+.
T Consensus 455 ~i~~~~vsf~y~~----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 455 AITFENIRFRYAP----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPA 527 (694)
T ss_pred eEEEEEEEEEcCC----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHH
Confidence 4789999998853 1356999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. |++||+.+.. | ..+.+ .+.++++..|+. +-.||.+|+. ...|||
T Consensus 528 ~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LSg 596 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGEK-GANLSG 596 (694)
T ss_pred HHHHhCeEEccCCeehhh-hHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecCC-CCCCCH
Confidence 25679999999998875 9999998642 1 23333 344445555543 3457777753 467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++|+|||||++||+.+...+.+.|+++. +++|+|+++|+++ ..+.||++++|++|++++.|
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999999999999999985 5799999999973 44669999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 674 ~~~~l 678 (694)
T TIGR01846 674 RHEEL 678 (694)
T ss_pred CHHHH
Confidence 86543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=356.32 Aligned_cols=212 Identities=29% Similarity=0.476 Sum_probs=177.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. +.++.+|+|+|++++|||.++|+||||||||||+|+|+|++++. +|+|.+||.+.+.
T Consensus 337 ~i~~~~v~f~y~~---~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 337 EIEFEQVNFAYPA---RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPA 410 (576)
T ss_pred eEEEEEEEEECCC---CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHH
Confidence 4789999998863 11257999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++|+||++.+++. |++||+.++. | ..+. ++++++++..|+.+ -.|+.+|+. ...|||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSg 479 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAA-SVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSG 479 (576)
T ss_pred HHHHhceEEccCCccccc-cHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCH
Confidence 24679999999998876 9999998742 1 1222 34666677666643 345666653 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+++++|++|+||||||+||+.++..+++.|+++. +++|+|++||++ +....+|++++|++|+++..|
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999985 479999999997 456789999999999999999
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
+.++
T Consensus 557 ~~~~ 560 (576)
T TIGR02204 557 THAE 560 (576)
T ss_pred cHHH
Confidence 8654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=354.57 Aligned_cols=212 Identities=25% Similarity=0.369 Sum_probs=176.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||.+...
T Consensus 313 ~I~~~~v~~~y~~----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTYPQ----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEECCC----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHH
Confidence 3789999998853 1356999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++.+++. |++||+.+.. + ..+.+ .++++++..++ .+-.|+.+|+. ...|||
T Consensus 386 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSg 454 (569)
T PRK10789 386 SWRSRLAVVSQTPFLFSD-TVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGER-GVMLSG 454 (569)
T ss_pred HHHhheEEEccCCeeccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCH
Confidence 24679999999999876 9999998752 1 23333 34445555554 34457777653 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|++++|||||+|||+.+...+.+.|+++. +|+|+|+++|+++ ..+.+|++++|++|+++..|
T Consensus 455 Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g 531 (569)
T PRK10789 455 GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRG 531 (569)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999985 5899999999973 45679999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 532 ~~~~l 536 (569)
T PRK10789 532 NHDQL 536 (569)
T ss_pred CHHHH
Confidence 86543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=308.76 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=157.5
Q ss_pred EEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------
Q 045930 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------ 77 (661)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------ 77 (661)
...|+.+.++. .+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|++...
T Consensus 2 ~~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCC-----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCccccccccccc
Confidence 45667776542 35699999999999999999999999999999999999877 48999999975321
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCcccccc
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR-------LIGNWHWRGI 147 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~L 147 (661)
.++.++|++|++.++ ..||+||+.+... ... +...++++.++|.+..+. ..+ ..+..|
T Consensus 74 ~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L 141 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINL 141 (218)
T ss_pred chhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcC
Confidence 135699999999877 5799999987531 111 123455666666543221 111 124579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK--ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~--~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|||||||++||++|+.+|++|||||||+|||+.++..+++ .++.+.++|.|||+++|++. .+ ..+|++++|++|.
T Consensus 142 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 9999999999999999999999999999999999999998 67777667899999999974 45 5699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=352.22 Aligned_cols=211 Identities=27% Similarity=0.376 Sum_probs=173.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .+.+|+|+|+++++||.++|+||||||||||+++|+|.+++ .+|+|.+||.+...
T Consensus 334 ~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP---TVGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC---CCCEEEECCEEhhhCCHH
Confidence 4789999998753 24589999999999999999999999999999999999988 48999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++ .|++||+.+.. + ..+.++.. +.++..++ .+..|+.+|+ ....|||
T Consensus 406 ~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~----~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSg 474 (585)
T TIGR01192 406 SLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVY----EAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSG 474 (585)
T ss_pred HHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHH----HHHHHhCcHHHHHhccccccchhcC-CCCCCCH
Confidence 2467999999998886 59999998752 1 23344333 33333333 2334666664 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ .+ +.+|++++|++|+++..|
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999885 4899999999973 44 679999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 552 ~~~~l 556 (585)
T TIGR01192 552 SFQEL 556 (585)
T ss_pred CHHHH
Confidence 86543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=350.75 Aligned_cols=219 Identities=26% Similarity=0.363 Sum_probs=190.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.+||++...
T Consensus 4 ~l~~~nl~~~y~~~--~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~ 78 (648)
T PRK10535 4 LLELKDIRRSYPSG--EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDAD 78 (648)
T ss_pred EEEEeeEEEEeCCC--CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHH
Confidence 48999999988531 11356999999999999999999999999999999999999874 8999999987431
Q ss_pred -----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 78 -----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 -----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
.++.++|++|++.+++.+|+.||+.+..... ....++.++++.++++.+||++..|+.++ .||||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS~Gq~ 150 (648)
T PRK10535 79 ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QLSGGQQ 150 (648)
T ss_pred HHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cCCHHHH
Confidence 1357999999999999999999999865432 23345666788999999999988888775 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. ..+.||++++|++|++++.|+++
T Consensus 151 qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQ 228 (648)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCcc
Confidence 9999999999999999999999999999999999999999878999999999973 44579999999999999999998
Q ss_pred Chh
Q 045930 233 SAP 235 (661)
Q Consensus 233 ~~~ 235 (661)
+..
T Consensus 229 ~~~ 231 (648)
T PRK10535 229 EKV 231 (648)
T ss_pred ccc
Confidence 764
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=292.77 Aligned_cols=156 Identities=30% Similarity=0.474 Sum_probs=140.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. +++++|+|+++++||+++|+|||||||||||++|+|+.++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHH
Confidence 468999998852 4699999999999999999999999999999999999987 48999999986431
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++| ||||||||++
T Consensus 72 ~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl~ 92 (163)
T cd03216 72 ARRAGIAMVYQ-----------------------------------------------------------LSVGERQMVE 92 (163)
T ss_pred HHhcCeEEEEe-----------------------------------------------------------cCHHHHHHHH
Confidence 1345788777 8999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.+.+|++++|++|++++
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999987799999999996 46888999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=297.14 Aligned_cols=166 Identities=33% Similarity=0.578 Sum_probs=146.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++...
T Consensus 1 l~~~~l~~~~~~----~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPG----RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCC----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHH
Confidence 468899988753 113699999999999999999999999999999999999987 48999999986421
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++ .||.||+ ||||||||++|
T Consensus 74 ~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~l 107 (171)
T cd03228 74 LRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIAI 107 (171)
T ss_pred HHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHHH
Confidence 2356999999987776 5998886 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.. ||++++|++|+
T Consensus 108 a~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 108 ARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999999964 79999999997 46666 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=294.00 Aligned_cols=163 Identities=34% Similarity=0.538 Sum_probs=143.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|. +.+
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i 66 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDL 66 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceE
Confidence 468999988742 246999999999999999999999999999999999998874 899999874 569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|++.++ ..||+||+.+. . .+.||||||||++||++|+
T Consensus 67 ~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 67 LFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred EEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHHHHHHHHHH
Confidence 9999998765 57999998642 1 1469999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ....+|++++|++|
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999999999999987 589999999973 45799999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=311.42 Aligned_cols=182 Identities=25% Similarity=0.354 Sum_probs=155.3
Q ss_pred cceeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCC
Q 045930 21 RRLLNGLTGYAE-----PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 21 ~~iL~~vs~~i~-----~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~l 95 (661)
.+.++|++++++ +||+++|+|||||||||||++|+|.+++. +|+|.++|. .++|++|+....+.+
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQYIKADYEG 76 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecccccCCCCC
Confidence 346677777776 79999999999999999999999999874 899999884 589999998877789
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
||+|++.+..... . . ....++++++.+||.+..++.++ .|||||||||+||++|+.+|++++|||||+
T Consensus 77 tv~e~l~~~~~~~---~-~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 77 TVRDLLSSITKDF---Y-T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred CHHHHHHHHhhhc---c-c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999997653211 0 1 12346788999999988888775 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 176 GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
+||+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|+++..
T Consensus 145 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPS 194 (246)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCe
Confidence 99999999999999999864 89999999996 578889999999976543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=300.92 Aligned_cols=190 Identities=23% Similarity=0.285 Sum_probs=160.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~ 81 (661)
++++|+++.+.. +.+++ +|+++++||+++|+||||||||||+++|+|..++. +|+|.++|.+... ..+.
T Consensus 2 l~~~~l~~~~~~------~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIEQ------KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEECC------cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhh
Confidence 789999998742 34555 99999999999999999999999999999998874 8999999986532 2346
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|++.+++.+||+||+.+..... . ..++++++++.+++.+..++.++ .||||||||++||+++
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rl~la~al 138 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCY-----SLSSGMQKIVAIARLI 138 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChh-----hCCHHHHHHHHHHHHH
Confidence 899999988888899999998865321 1 13467888999999888887764 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+.+|++++|||||+|||+.++..+.+.|++.+++|+|||+++|++. ++ +.+|-+
T Consensus 139 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 139 ACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 9999999999999999999999999999887777999999999974 33 335554
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=379.86 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=179.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--------------------
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-------------------- 61 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-------------------- 61 (661)
.++|+||++.|++ +++++||+|+|++++||+.+||+||||||||||+++|.|++++.
T Consensus 1165 ~I~f~nVsF~Y~~---~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYIS---RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCC---CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 4889999999974 12357999999999999999999999999999999999999861
Q ss_pred -------------------------------CceeeEEEECCeecc-----cccCeEEEEecCCCCCCCCCHHHHHHHHH
Q 045930 62 -------------------------------VVMTGNVLLNGKKRR-----LDYGGVAYVTQENIMLGTLTVRETIAYSA 105 (661)
Q Consensus 62 -------------------------------~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 105 (661)
...+|+|++||.+.+ ..++.+|||+|++.+|+. |++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 014899999999853 236789999999999865 9999999862
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 045930 106 HLRLPSNMNNEEITDVIEEAITEM-------GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178 (661)
Q Consensus 106 ~l~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD 178 (661)
+ ..+.++ ++++++.. .|.+-.||.+|+ ....||||||||++|||||+++|+||+||||||+||
T Consensus 1321 ----~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1321 ----E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred ----C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 1 234444 44444443 355677999986 345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEeC----CeEE-EecCCCCh
Q 045930 179 SAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSG----GETV-YFGEAKSA 234 (661)
Q Consensus 179 ~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~----G~~v-~~G~~~~~ 234 (661)
+.+...|.+.|++++ .+++|+|+++|++ ...+.||+|++|++ |+++ +.|+.++.
T Consensus 1391 ~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265 1391 SNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence 999999999999997 3689999999997 35677999999998 9955 89986553
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=315.19 Aligned_cols=222 Identities=27% Similarity=0.407 Sum_probs=195.0
Q ss_pred eEEEEEEEEEeecCCc-----ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc
Q 045930 2 YLVWEEVTVVVPNFGS-----GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~ 76 (661)
-|+-+|+++.++..+. ....+++++||+++++||.++|+|.||||||||=.+|.+++++ +|+|.++|++..
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~ 351 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDID 351 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCcccc
Confidence 4678899988875321 1224689999999999999999999999999999999999886 699999998753
Q ss_pred --------cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCcccc
Q 045930 77 --------LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWR 145 (661)
Q Consensus 77 --------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~ 145 (661)
..++++-.|+||| .+-|.+||.|-+.-+...+-| ..++.|+.+++.++|+++||+. .++++. +
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-----h 425 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP-----H 425 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC-----c
Confidence 1256789999998 588999999999999887654 4688999999999999999964 566665 5
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+.|||||||++||||++.+|++++||||||.||-.-+.+++++|++|.++ |.+-++++||. ..+..+||+|++|++|+
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGK 504 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCE
Confidence 79999999999999999999999999999999999999999999999765 89999999996 68899999999999999
Q ss_pred EEEecCCCCh
Q 045930 225 TVYFGEAKSA 234 (661)
Q Consensus 225 ~v~~G~~~~~ 234 (661)
+|+.|+++++
T Consensus 505 iVE~G~~~~i 514 (534)
T COG4172 505 IVEQGPTEAV 514 (534)
T ss_pred EeeeCCHHHH
Confidence 9999997654
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=306.53 Aligned_cols=195 Identities=20% Similarity=0.234 Sum_probs=161.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE-ECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL-LNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~-~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
++|+|||+++++||+++|+||||||||||+++|+|..++. +|+|. ++|... .+.+++.+++.+||+||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999998874 89997 776532 12345678899999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
+.+.+... ....++. .+.+.+.++|++..|+.++ +||||||||++||++|+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876543 1223322 2334456788888888775 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHh
Q 045930 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240 (661)
Q Consensus 181 ~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~ 240 (661)
++..+.+.|.+..+ ++|+|+++|++ .++..+||++++|++|++++.|+.+++..++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998865443 46899999997 478889999999999999999998877766544
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=292.39 Aligned_cols=191 Identities=25% Similarity=0.415 Sum_probs=168.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----cccCeEEEEecCCCCCCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQENIMLGT 94 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~~l~~~ 94 (661)
+.+||+++|+++++||..+|.||||||||||+|+++.+.+++ +|++++.|++.+ ..+.+|+|+.|.+.+|+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 467999999999999999999999999999999999999984 999999999864 236789999999999998
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
||++|+.|..++|..+ + .+++..+.|++++|.+ ..++.+- .||||||||++|+|.|..-|+||+||||
T Consensus 92 -tVeDNlifP~~~r~rr--~---dr~aa~~llar~~l~~~~L~k~it-----~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR--P---DRAAALDLLARFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred -chhhccccchHHhccC--C---ChHHHHHHHHHcCCchhhhcchhh-----hccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999988776321 1 2355778899999976 4555553 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 174 TSGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
||.||..++..|-++|.++. ++...|+.+||++ ++..+.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999986 5689999999997 577899999999999876
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=343.46 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=172.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|+++|+++.++ ++++|+|+||++++||+++|+|||||||||||++|+|++++. +|+|.++|. ..+
T Consensus 2 l~i~~ls~~~~------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i 66 (530)
T PRK15064 2 LSTANITMQFG------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERL 66 (530)
T ss_pred EEEEEEEEEeC------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEE
Confidence 78999999874 256999999999999999999999999999999999999874 899999873 358
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHh-c-----------CCCCC-----------------CCHHHHHHHHHHHHHHcCCCc
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAH-L-----------RLPSN-----------------MNNEEITDVIEEAITEMGLED 133 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~-l-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~ 133 (661)
+|++|++.+++.+||+|++.+... . ..+.. ....+.+++++++++.+||.+
T Consensus 67 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 146 (530)
T PRK15064 67 GKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPE 146 (530)
T ss_pred EEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCh
Confidence 999999989999999999986421 0 00000 000123457889999999976
Q ss_pred cc-cccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh
Q 045930 134 CA-DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA 212 (661)
Q Consensus 134 ~~-d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~ 212 (661)
.. ++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|++ ..+.+
T Consensus 147 ~~~~~~~~-----~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~ 217 (530)
T PRK15064 147 EQHYGLMS-----EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNS 217 (530)
T ss_pred hHhcCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHh
Confidence 43 44554 5999999999999999999999999999999999999999999863 589999999996 57889
Q ss_pred hcCeEEEEeCCeE-EEecCCCC
Q 045930 213 LFDDLFLLSGGET-VYFGEAKS 233 (661)
Q Consensus 213 ~~D~v~lL~~G~~-v~~G~~~~ 233 (661)
+||++++|++|++ ++.|+.++
T Consensus 218 ~~d~i~~l~~g~i~~~~g~~~~ 239 (530)
T PRK15064 218 VCTHMADLDYGELRVYPGNYDE 239 (530)
T ss_pred hcceEEEEeCCEEEEecCCHHH
Confidence 9999999999999 47887654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=340.71 Aligned_cols=213 Identities=23% Similarity=0.359 Sum_probs=174.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
++++|+++. .+.+|+|||+++++||+++|+||||||||||+++|+|..++. +|+|.++|++...
T Consensus 251 i~~~~l~~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 251 LEVRNLTSL--------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANE 319 (491)
T ss_pred EEEeCcccc--------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHH
Confidence 566676653 135899999999999999999999999999999999999874 8999999976531
Q ss_pred -ccCeEEEEecCC---CCCCCCCHHHHHHHHH-hcCCC-CC-CCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQEN---IMLGTLTVRETIAYSA-HLRLP-SN-MNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~-~l~~~-~~-~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSg 149 (661)
.++.++|++|++ .+++.+|+.+|..+.. ..... .. .+..+.++.++++++.+++. +..|+.++ +|||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSg 394 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG-----SLSG 394 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc-----cCCc
Confidence 134599999985 4688898887743221 00000 01 12334456788999999995 46677775 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+||++++.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+ +++.++||++++|++|+++..+
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999999988899999999996 5788999999999999999877
Q ss_pred CCC
Q 045930 230 EAK 232 (661)
Q Consensus 230 ~~~ 232 (661)
+.+
T Consensus 474 ~~~ 476 (491)
T PRK10982 474 DTK 476 (491)
T ss_pred ccc
Confidence 653
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=313.42 Aligned_cols=199 Identities=21% Similarity=0.372 Sum_probs=159.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++| .
T Consensus 39 ~l~i~nls~~--------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g--------~ 99 (282)
T cd03291 39 NLFFSNLCLV--------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG--------R 99 (282)
T ss_pred eEEEEEEEEe--------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------E
Confidence 3678888873 145999999999999999999999999999999999999874 89999987 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD-------RLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d-------~~vg~~~~~~LSgGerqR 154 (661)
++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+..+ +.++. ..+.||||||||
T Consensus 100 i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~qr 167 (282)
T cd03291 100 ISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGITLSGGQRAR 167 (282)
T ss_pred EEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCCcCCHHHHHH
Confidence 8999999988875 999999864211 11 12233444445443222 22221 235799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL-KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L-~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||++|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||+++|++. ++ ..||++++|++|++++.|++++
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999865 5564 4799999999974 44 5799999999999999998654
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
.
T Consensus 245 ~ 245 (282)
T cd03291 245 L 245 (282)
T ss_pred H
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=303.02 Aligned_cols=213 Identities=28% Similarity=0.415 Sum_probs=182.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------ 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------ 76 (661)
++++|+++.+. +|+||+|+|.+|+|||-.+|+|||||||||||++++|..++. +|.+.+.|+...
T Consensus 32 i~l~~v~v~r~------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~ 102 (257)
T COG1119 32 IELKNVSVRRN------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIF 102 (257)
T ss_pred EEecceEEEEC------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchH
Confidence 78899999875 478999999999999999999999999999999999999874 899999998642
Q ss_pred cccCeEEEEecC--CCCCCCCCHHHHHHHH--HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 77 LDYGGVAYVTQE--NIMLGTLTVRETIAYS--AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ~~~~~i~yv~Q~--~~l~~~lTV~E~l~~~--~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
..++.||+|.-+ ..+.+..+|+|-+.-+ +..........++..+++..+++.+|+.+.+|+..+. ||-|||
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~ 177 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQ 177 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh-----cCHhHH
Confidence 236789999664 3455677888877533 2222222122345567889999999999999999875 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD--GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|++||++ +|+-..+++++++++|+++++|.
T Consensus 178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999999875 89999999996 68999999999999999999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=355.72 Aligned_cols=218 Identities=31% Similarity=0.446 Sum_probs=187.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.||+ .++.+||+|+|+++++|+-+||+|||||||||.+.+|-..++| ..|.|.+||.+.+.
T Consensus 987 ~I~~~~V~F~YPs---RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp---~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPT---RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP---DAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred EEEEeeeEeeCCC---CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCcccccCCHH
Confidence 4799999999985 4568899999999999999999999999999999999999988 49999999988642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.|+++|.|.|+|.||.. |++|||.|+. . ..+.+|..+..+.. ++. .+|.+-.||.+|+.+ .+|||||||
T Consensus 1061 ~LR~~i~lVsQEP~LF~~-TIrENI~YG~----~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG-~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFNG-TIRENIAYGS----E-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG-VQLSGGQKQ 1133 (1228)
T ss_pred HHHHhcceeccCchhhcc-cHHHHHhccC----C-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc-CcCCchHHH
Confidence 26889999999999987 9999999981 1 24555544433322 122 378999999999733 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|++||||+++||+||||||.||.||+++.+-+.+.|.+.. +|+|.|++.|.++ ..+.+|.|.++++|++++.|+-++
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHH
Confidence 9999999999999999999999999999999999999975 4899999999974 567899999999999999998665
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
..
T Consensus 1211 L~ 1212 (1228)
T KOG0055|consen 1211 LL 1212 (1228)
T ss_pred HH
Confidence 44
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=343.32 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=173.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++||++.++. ++.+|+|+||++++||+++|+|||||||||||++|+|.+++ .+|+|.+++. ..
T Consensus 6 ~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p---~~G~i~~~~~------~~ 71 (556)
T PRK11819 6 IYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE---FEGEARPAPG------IK 71 (556)
T ss_pred EEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEecCC------CE
Confidence 5889999998741 25799999999999999999999999999999999999987 4899998752 46
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHh-cC------------CCCCCC--------------------HHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAH-LR------------LPSNMN--------------------NEEITDVIEEAITE 128 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~-l~------------~~~~~~--------------------~~~~~~~v~~~l~~ 128 (661)
+|||+|++.+++.+||.||+.+... .+ ...... ..+.+++++++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999999999999999999987531 00 000000 00124568889999
Q ss_pred cCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 129 MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 129 lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
+||.. .++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||++ .
T Consensus 152 ~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~-~ 221 (556)
T PRK11819 152 LRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR-Y 221 (556)
T ss_pred CCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-H
Confidence 99964 677765 599999999999999999999999999999999999999999999873 5999999996 5
Q ss_pred HHHhhcCeEEEEeCCeEE-EecCCCC
Q 045930 209 EVFALFDDLFLLSGGETV-YFGEAKS 233 (661)
Q Consensus 209 ~i~~~~D~v~lL~~G~~v-~~G~~~~ 233 (661)
++.++||+|++|++|+++ +.|+.++
T Consensus 222 ~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred HHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 788999999999999986 7776543
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=345.96 Aligned_cols=185 Identities=31% Similarity=0.482 Sum_probs=156.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ ++++|+|+|++++|||.+||+||||||||||+|+|+|.++++ +|+|.+||.+.+.
T Consensus 334 ~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHH
Confidence 4789999999853 245999999999999999999999999999999999999884 9999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSgG 150 (661)
.++.++||+|++.+|+. |++|||.++. | ..+++ +++++++..++. +-.||.+|+.+ ..||||
T Consensus 406 lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G-~~LSGG 474 (529)
T TIGR02868 406 LRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLDTVLGEGG-ARLSGG 474 (529)
T ss_pred HHhheEEEccCcccccc-cHHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcccc-CcCCHH
Confidence 24679999999999987 9999999852 1 22333 355666666554 45688888633 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
||||++|||||+++|++|+||||||+||+.+...+.+.|+++. +++|+|+++|++
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999874 479999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=338.89 Aligned_cols=214 Identities=21% Similarity=0.354 Sum_probs=172.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.+++ +.+|+|+|+++++||+++|+||||||||||+++|+|..++. .+|+|.++|++..
T Consensus 260 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 260 RIVLNNGVVSYND------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred eEEEeceEEEECC------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 3788999887742 46999999999999999999999999999999999976531 3799999997531
Q ss_pred -cccCeEEEEecCCCCCC--CCCHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHH
Q 045930 77 -LDYGGVAYVTQENIMLG--TLTVRETIAYSAHL--RLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGG 150 (661)
Q Consensus 77 -~~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgG 150 (661)
..++.++|++|++.++. ..|++|++.+.... ....... ++.+++++++++.+||.+ ..++.++ .||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH-----SLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh-----hCCHH
Confidence 12356999999876543 35777776543211 1111111 233567899999999987 7888775 59999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCchHHHh-hcCeEEEEeCCeEEEe
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIHQPSSEVFA-LFDDLFLLSGGETVYF 228 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g-~tvi~s~Hq~~~~i~~-~~D~v~lL~~G~~v~~ 228 (661)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++ +++.+ ++|++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998875 4799999997 46766 5999999999998876
Q ss_pred cC
Q 045930 229 GE 230 (661)
Q Consensus 229 G~ 230 (661)
-.
T Consensus 485 ~~ 486 (490)
T PRK10938 485 VQ 486 (490)
T ss_pred ec
Confidence 44
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=321.95 Aligned_cols=220 Identities=29% Similarity=0.454 Sum_probs=185.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|..+++++.-+ +.++.+|+|+||++.+||.+||+||||||||||.++|.|..++ .+|.|.+||.+.+.
T Consensus 334 ~L~Ve~l~~~PP----g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 334 ALSVERLTAAPP----GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDRE 406 (580)
T ss_pred eeeEeeeeecCC----CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecchhhhcCCHH
Confidence 477888888543 3457899999999999999999999999999999999999988 49999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT-----DVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.-+.|||.||+-.+|+. ||.|||. |...+.+.+..- ..|.+++ +.|.+-.||.+|+.+ ..|||||
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~~G-~~LSgGQ 477 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGEGG-ATLSGGQ 477 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCCCC-CCCCchH
Confidence 23679999999999988 9999996 222222222211 1233333 367888999999743 6899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.| .+...+|+|++|++|++-.+|+.
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCH
Confidence 9999999999999999999999999999999999999999999999999999998 48899999999999999999999
Q ss_pred CChhHHHH
Q 045930 232 KSAPTFFA 239 (661)
Q Consensus 232 ~~~~~~f~ 239 (661)
+|++....
T Consensus 556 ~eVLa~~~ 563 (580)
T COG4618 556 EEVLAKVL 563 (580)
T ss_pred HHHHHHhc
Confidence 98877543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=340.47 Aligned_cols=199 Identities=23% Similarity=0.334 Sum_probs=170.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++|. +.
T Consensus 319 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 319 ALEVENLTKGFD------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred eEEEEeeEEeeC------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 378899998774 246999999999999999999999999999999999998874 899999874 46
Q ss_pred EEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHH
Q 045930 82 VAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 82 i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+||++|++. +++.+||+|++.+... . .+.+++++++++.+|+. +..|+.++ .||||||||++||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~~---~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la 450 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWRQ---E-----GDDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGGEKGRMLFG 450 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhcc---C-----CccHHHHHHHHHHcCCChhHhcCccc-----ccCHHHHHHHHHH
Confidence 999999863 5667999999864210 0 11235678999999994 67788775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE-EecCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAK 232 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~~ 232 (661)
++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+ +++..+||++++|++|+++ +.|+++
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYE 521 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHH
Confidence 9999999999999999999999999999999887 35999999996 5788999999999999998 777654
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=342.24 Aligned_cols=198 Identities=31% Similarity=0.489 Sum_probs=166.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ .++++|+|+|++++|||.++|+||||||||||+|+|+|.+++. +|+|.+||.+.+.
T Consensus 320 ~i~~~~v~f~y~~----~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAYPG----RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEECCC----CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHH
Confidence 4789999999863 1246999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. |++||+.++.. ..++ +.++++++..++.+ -.||.+|+ ....|||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSg 461 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAG-TIAENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSG 461 (529)
T ss_pred HHHhheEEEcCCCcccCc-CHHHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCH
Confidence 25679999999999875 99999987521 1233 34556666666643 35777775 3357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
|||||++|||+|+++|++++||||||+||+.+...+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999999999999999999999999999999999999999985 5899999999973 45779999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=341.19 Aligned_cols=208 Identities=25% Similarity=0.370 Sum_probs=170.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+++. ..
T Consensus 4 ~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p---~~G~i~~~~~------~~ 69 (552)
T TIGR03719 4 IYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE---FNGEARPAPG------IK 69 (552)
T ss_pred EEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEecCC------CE
Confidence 4789999998741 25699999999999999999999999999999999999887 4899998752 46
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhc-C-----C------CCCCCHH---------------------HHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHL-R-----L------PSNMNNE---------------------EITDVIEEAITE 128 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l-~-----~------~~~~~~~---------------------~~~~~v~~~l~~ 128 (661)
+||++|++.+++.+||+||+.+.... + . ......+ +...+++++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999875321 0 0 0000010 012456778888
Q ss_pred cCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 129 MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 129 lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
+|+.. .++.++ .|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|++ .
T Consensus 150 ~~l~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 150 LRCPP-WDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCCc-ccCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 88854 566664 59999999999999999999999999999999999999999999876 35999999996 5
Q ss_pred HHHhhcCeEEEEeCCeEE-EecCCCC
Q 045930 209 EVFALFDDLFLLSGGETV-YFGEAKS 233 (661)
Q Consensus 209 ~i~~~~D~v~lL~~G~~v-~~G~~~~ 233 (661)
.+..+||++++|++|+++ +.|+.++
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSS 245 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHH
Confidence 788999999999999976 6776554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=288.76 Aligned_cols=217 Identities=28% Similarity=0.433 Sum_probs=189.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC-eecc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG-KKRR---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g-~~~~---- 76 (661)
.|+.+|+++++.. .++|+|+||++.|||+-+|+|||||||||+|++|+|..+|. .|++.++| .+..
T Consensus 5 iL~~~~vsVsF~G------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 5 ILYLDGVSVSFGG------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75 (249)
T ss_pred eEEEeceEEEEcc------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCH
Confidence 5789999999874 46999999999999999999999999999999999998884 89999999 3332
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS-----NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
..+..||--+|.|..|..+||+|||..+.+...+- .....+-+++++++|+..||.+.+|...+. ||.
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~-----LSH 150 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSH 150 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh-----hcc
Confidence 23567999999999999999999999886543110 011234467899999999999999999875 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||++.|++-++.+|++|+||||++|+--....+.-++|+.+|. +++|+++.||. ..+.+++|+|.+|..|.+...|
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceeecc
Confidence 999999999999999999999999999999999999999999987 58999999995 6899999999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.+++
T Consensus 229 sld~v 233 (249)
T COG4674 229 SLDEV 233 (249)
T ss_pred cHHHh
Confidence 86643
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=339.26 Aligned_cols=203 Identities=21% Similarity=0.250 Sum_probs=168.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++.+|+|+|++++|||.+||+||||||||||+++|+|.+++. +|+|.+||.+...
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHH
Confidence 4789999998862 246999999999999999999999999999999999999884 9999999997542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++||+|++.+++. |++|| . .. ..++.+++.++.+++.+..+..-|......||||||||++
T Consensus 394 ~~~~~i~~v~q~~~lf~~-ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFDQ-LLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA 459 (547)
T ss_pred HHhhheEEEecChhHHHH-hhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHH
Confidence 25679999999988875 77776 1 01 1234577888899887644321110012479999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||++++|++|+|||||++||+.++..+.+.|.+..+ .|+|+|+++|++ +..+.+|++++|++|+++..
T Consensus 460 lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999987654 589999999997 45678999999999999866
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=309.36 Aligned_cols=226 Identities=24% Similarity=0.361 Sum_probs=196.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG--NVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~--~~~~~G~i~~~g~~~~--- 76 (661)
-|..+||++.+.. .+....++++|||++++||.+||+|.||||||-..+.+.|+++. ....+|+|.++|++.-
T Consensus 6 lL~v~nLsV~f~~--~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 6 LLSIRNLSVAFHQ--EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred ceeeeccEEEEec--CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 3789999999875 23457899999999999999999999999999999999999864 3456799999998631
Q ss_pred ------cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 77 ------LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 77 ------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
.+-.+|++++|+| .+.|-.|+.+.+.-..+++ .++++++.++++.++|+.+|+.+...++- .++++||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~--~yPHeLS 159 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLD--AYPHELS 159 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhh--hCCcccC
Confidence 1235799999998 5788889999998887765 46788889999999999999987665543 3567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||||||.||.||+.+|++||.||||+.||..-+.+|+++|++|.++ |..++++|||. ..+.+++|+|++|.+|++++
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEee
Confidence 99999999999999999999999999999999999999999999775 99999999996 57889999999999999999
Q ss_pred ecCCCCh
Q 045930 228 FGEAKSA 234 (661)
Q Consensus 228 ~G~~~~~ 234 (661)
.|++++.
T Consensus 239 ~~~t~~l 245 (534)
T COG4172 239 TGTTETL 245 (534)
T ss_pred cCcHHHH
Confidence 9987653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=338.69 Aligned_cols=208 Identities=21% Similarity=0.249 Sum_probs=170.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++.. .+..+.+|+|+|+++++||.+||+||||||||||+++|+|.++++ +|+|.+||.+.+.
T Consensus 337 ~i~~~~v~f~y~~~-~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 337 SIELKDVHMNPKAP-EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRD 412 (555)
T ss_pred eEEEEEEEEEeCCC-CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 47899999998631 111246999999999999999999999999999999999999884 8999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-ccccccCHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN-WHWRGISGGEKKRL 155 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~-~~~~~LSgGerqRv 155 (661)
.++.++||+|++.+++. |++||.. + +..++.++++++.+++.+..+...+. .....||||||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 24679999999988876 7888731 1 11234577889999998766554322 22357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK-NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~-~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
+|||+++.+|++++|||||++||+.+...+.+.+. .+..+|+|+|+++|+++ ..+.+|+|++|++|+++..
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999998764 56567899999999973 5678999999999999754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=372.97 Aligned_cols=212 Identities=21% Similarity=0.318 Sum_probs=178.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.|+. ..+.+|+|+|++++|||.+||+|+||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1234 ~I~f~nVsf~Y~~----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRYRP----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEECC----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHH
Confidence 3899999999853 1356999999999999999999999999999999999999884 8999999988532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.+++++|||||+.+|+. |+||||.+.. ..+++ .+.++++..++. +-.|+.+|+ ....|||
T Consensus 1307 ~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSg 1374 (1495)
T PLN03232 1307 DLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSV 1374 (1495)
T ss_pred HHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCH
Confidence 25789999999999987 9999997531 23333 355666665553 345777775 2356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.|
T Consensus 1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232 1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEYD 1451 (1495)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999875 4799999999973 44559999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1452 t~~eLl 1457 (1495)
T PLN03232 1452 SPQELL 1457 (1495)
T ss_pred CHHHHH
Confidence 977643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=371.47 Aligned_cols=212 Identities=22% Similarity=0.322 Sum_probs=179.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|+. ..+.+|+|+|++|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1237 ~I~f~nVsf~Y~~----~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~ 1309 (1622)
T PLN03130 1237 SIKFEDVVLRYRP----ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLM 1309 (1622)
T ss_pred cEEEEEEEEEeCC----CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHH
Confidence 4899999999853 1246999999999999999999999999999999999999884 8999999998542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++++++||||+.+|+. |+||||.+.. ..++++ +.++++..++ .+-.|+.+|+ ....|||
T Consensus 1310 ~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSg 1377 (1622)
T PLN03130 1310 DLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSV 1377 (1622)
T ss_pred HHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC-CCCCCCH
Confidence 25789999999999987 9999997541 223333 5555555554 3456777875 3357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++ ....||+|++|++|++++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLN--TIIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChH--HHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999854 799999999974 34559999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1455 t~~eLl 1460 (1622)
T PLN03130 1455 TPENLL 1460 (1622)
T ss_pred CHHHHH
Confidence 988764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=334.70 Aligned_cols=199 Identities=25% Similarity=0.314 Sum_probs=171.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.+.. ..|+++|+++++||+++|+||||||||||+++|+|.+++. +|+|.++ ..
T Consensus 340 ~l~~~~ls~~~~~-------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~~ 401 (590)
T PRK13409 340 LVEYPDLTKKLGD-------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------LK 401 (590)
T ss_pred EEEEcceEEEECC-------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------ee
Confidence 3678888876631 2489999999999999999999999999999999999874 8999886 14
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|+..+.+.+||+|++.+.... ... ...++++++.+||.+..|+.++ .|||||||||+||++|
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL 468 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACL 468 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHH
Confidence 89999998888899999999875321 111 2356889999999988888875 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+ .++..++|++++|++ ++...|...+
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~~-~~~~~g~~~~ 539 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFEG-EPGKHGHASG 539 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcC-cceeeeecCC
Confidence 9999999999999999999999999999999875 89999999996 578899999999965 8877777543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=367.58 Aligned_cols=212 Identities=20% Similarity=0.308 Sum_probs=179.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+|+|+++.|++ ..+.+|+||||+|+|||.+||+|+||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1308 ~I~f~nVsf~Y~~----~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE----GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLR 1380 (1560)
T ss_pred eEEEEEEEEEeCC----CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHH
Confidence 4889999999863 1245999999999999999999999999999999999999884 8999999998532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.++|||||+.+|+. ||+|||... ...++ +.+.++++..||.+ -.|+.+|+ ....|||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSg 1448 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSV 1448 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCH
Confidence 35789999999999987 999999632 12333 34667777777654 45777875 3356999
Q ss_pred HHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTR-PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~-P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
|||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|++ +....||+|++|++|++++.
T Consensus 1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEE
Confidence 999999999999996 89999999999999999999999999864 479999999997 45677999999999999999
Q ss_pred cCCCChh
Q 045930 229 GEAKSAP 235 (661)
Q Consensus 229 G~~~~~~ 235 (661)
|++++..
T Consensus 1526 Gt~~eLl 1532 (1560)
T PTZ00243 1526 GSPRELV 1532 (1560)
T ss_pred CCHHHHH
Confidence 9977643
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=333.98 Aligned_cols=200 Identities=23% Similarity=0.353 Sum_probs=167.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|..++. +|+|.+++. ..
T Consensus 324 ~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 388 (556)
T PRK11819 324 VIEAENLSKSFG------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------VK 388 (556)
T ss_pred EEEEEeEEEEEC------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 378889988774 256999999999999999999999999999999999999874 899998542 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+||++|++ .+++.+||+|++.+...... .... ...++++++.+||.+ ..++.++ +|||||||||+||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~ 458 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGERNRLHLAK 458 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHHHHHHHHHH
Confidence 99999996 78889999999998653221 1111 123457899999964 5677775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-CeEE-EecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG-GETV-YFGE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~-G~~v-~~G~ 230 (661)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ .++..+||++++|++ |+++ +.|+
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCC
Confidence 9999999999999999999999999999999873 4 899999996 578899999999985 7876 3443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=367.05 Aligned_cols=212 Identities=17% Similarity=0.259 Sum_probs=178.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|+. ..+.+|+|||++++|||.+||+|+||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1284 ~I~f~nVsf~Y~~----~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~ 1356 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE----DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLH 1356 (1522)
T ss_pred cEEEEEEEEEeCC----CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHH
Confidence 4899999999863 1246999999999999999999999999999999999999884 8999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.+++++|||||+.+|+. |+||||.... ..++++ +.++++..++. +-.|+.+|+ ....|||
T Consensus 1357 ~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSg 1424 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAE-GGENLSV 1424 (1522)
T ss_pred HHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCH
Confidence 26789999999999987 9999996321 233433 55666666654 346777775 2356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++ ....+|+|++|++|++++.|
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999875 4799999999973 45569999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1502 ~~~eLl 1507 (1522)
T TIGR00957 1502 APSNLL 1507 (1522)
T ss_pred CHHHHH
Confidence 987654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=295.44 Aligned_cols=189 Identities=26% Similarity=0.378 Sum_probs=165.3
Q ss_pred eEEEEEEEEEeecCCc-cc--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc
Q 045930 2 YLVWEEVTVVVPNFGS-GP--TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~-~~--~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~ 78 (661)
-|+.+||+..++.... +. ...+++||||++++||+++|+|+||||||||-++|.|+.+| ++|+|.++|++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhc
Confidence 4789999998875221 11 24799999999999999999999999999999999999998 499999999874321
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
. +++..+++.++|+.+||.. .+++.. +++|||||||+.|
T Consensus 81 ~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----helSGGQrQRi~I 120 (268)
T COG4608 81 S-----------------------------------KEERRERVLELLEKVGLPEEFLYRYP-----HELSGGQRQRIGI 120 (268)
T ss_pred c-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----cccCchhhhhHHH
Confidence 1 3456678999999999864 677765 5799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||||+.+|+++++|||||.||...+.+++++|+++.++ |.|.++++||. +.+..++||+.+|..|++|+.|+.++.
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHH
Confidence 99999999999999999999999999999999999876 99999999996 578899999999999999999997754
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=332.24 Aligned_cols=200 Identities=23% Similarity=0.352 Sum_probs=166.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.+++. ..
T Consensus 322 ~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~~ 386 (552)
T TIGR03719 322 VIEAENLSKGFG------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------VK 386 (552)
T ss_pred EEEEeeEEEEEC------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------eE
Confidence 378889988774 256999999999999999999999999999999999998874 899998542 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+||++|++ .+++.+||.|++.+..... ..... +.+++++++.+||.+ ..++.++ .|||||||||+||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe~qrv~la~ 456 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGERNRVHLAK 456 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHHHHHHHHHH
Confidence 99999996 4788899999999864321 11111 223567899999964 5677775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-CeEE-EecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG-GETV-YFGE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~-G~~v-~~G~ 230 (661)
+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ ..+..+||++++|++ |+++ +.|+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCC
Confidence 9999999999999999999999999999999983 3 899999996 578899999999986 5776 4443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=302.29 Aligned_cols=189 Identities=26% Similarity=0.377 Sum_probs=159.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE-----------ECCeeccc-----c--cCeE
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL-----------LNGKKRRL-----D--YGGV 82 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~-----------~~g~~~~~-----~--~~~i 82 (661)
+.+|+|+| .+++||+++|+|||||||||||++|+|++++. +|+|. ++|.+... . ...+
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 89 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKV 89 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhcccce
Confidence 35999999 59999999999999999999999999999884 89996 77765321 1 1247
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|+..+++. ++.+++.+... ..+.++.+.++++.+||++..++.++ .||||||||++||++|+
T Consensus 90 ~~~~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~ 155 (255)
T cd03236 90 IVKPQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNID-----QLSGGELQRVAIAAALA 155 (255)
T ss_pred eeecchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHH
Confidence 899999888774 88888876421 22334668899999999988877664 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
.+|+++++||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|+ |++.+.|
T Consensus 156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999988899999999996 57788999999995 5566544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=295.77 Aligned_cols=205 Identities=25% Similarity=0.379 Sum_probs=178.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----ccCeEEEEe-cCCCCCCCCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----DYGGVAYVT-QENIMLGTLT 96 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~~~~i~yv~-Q~~~l~~~lT 96 (661)
.+++|+||+|++|++++++|||||||||+||+|+|++.| .+|.|.+||...-. .-+.+++|+ |.-.+.-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p---~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP---TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc---CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 589999999999999999999999999999999999988 49999999985421 124566664 4455666667
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
+.|.+.....+. ..+.++.+++.+.+.+.++|+...+..+ |.||-|||.|+.+|.+|+++|+||||||||=|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888877654442 5678889999999999999998888876 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHH
Q 045930 177 LDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFF 238 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f 238 (661)
||..++..+.+.|++..++ +.||+.+||+. +.+.++||||++++.|+++|+|+.++..+-|
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999864 99999999996 5899999999999999999999988766544
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=361.95 Aligned_cols=213 Identities=23% Similarity=0.391 Sum_probs=171.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEEC-Ceecc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN-GKKRR---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~-g~~~~---- 76 (661)
.++++|+++.++. ++.+++|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.++ |.+..
T Consensus 382 ~I~~~nVsf~Y~~---~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDT---RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCC---CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCH
Confidence 4789999999863 12356999999999999999999999999999999999999884 9999995 55532
Q ss_pred -cccCeEEEEecCCCCCCCCCHHHHHHHHHhc-CC---------CCC------C--------------------------
Q 045930 77 -LDYGGVAYVTQENIMLGTLTVRETIAYSAHL-RL---------PSN------M-------------------------- 113 (661)
Q Consensus 77 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l-~~---------~~~------~-------------------------- 113 (661)
..++.+|||+|++.+|+. ||+||+.++... +. +.. .
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNEL 534 (1466)
T ss_pred HHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhh
Confidence 125679999999999975 999999986310 00 000 0
Q ss_pred ------CHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 114 ------NNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 114 ------~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
.....++.+.++++.+++.+ ..||.+|. ....||||||||++|||||+.+|+||||||||++||+.
T Consensus 535 l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 535 IEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 00011245677777776654 34677765 35679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 181 AAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 181 ~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
++..+.+.|+++++ +|+|+|+++|+++ .+ +.||+|++|++|+
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCCc
Confidence 99999999999976 5899999999974 44 7899999999873
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=314.16 Aligned_cols=214 Identities=27% Similarity=0.434 Sum_probs=180.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.+. ++|++|+||||++.||+.+|++||||+||||++++|-...+- .+|.|.+||++.+.
T Consensus 537 ~i~fsnvtF~Y~-----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 537 KIEFSNVTFAYD-----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNVTQS 608 (790)
T ss_pred eEEEEEeEEecC-----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHHHHH
Confidence 478999999875 368899999999999999999999999999999999998875 38999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HH-HHcCCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE--AI-TEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~--~l-~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.||.||||..+|++ |+..|+.|+- | +.+.+|..+.... += +.+++.+-.+++||+.+. .|||||||
T Consensus 609 SLRs~IGVVPQDtvLFNd-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQ 681 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFND-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQ 681 (790)
T ss_pred HHHHhcCcccCcceeecc-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchh
Confidence 35789999999999977 8988988862 2 3345554333222 22 336888999999998443 48999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+|||+++++|.+++|||.||+||..+...|...|.+++. |+|.|++.|..+ ..--+|.|+++++|++++.|.-++
T Consensus 682 RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS--TivnAD~ILvi~~G~IvErG~Hee 758 (790)
T KOG0056|consen 682 RVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS--TIVNADLILVISNGRIVERGRHEE 758 (790)
T ss_pred hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh--heecccEEEEEeCCeEeecCcHHH
Confidence 99999999999999999999999999999999999999986 688888999975 334589999999999999997544
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=360.81 Aligned_cols=211 Identities=23% Similarity=0.322 Sum_probs=178.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|+. ..+.+|+|||++|+|||.+||+|+||||||||+++|.|+++ .+|+|.+||.+...
T Consensus 1217 ~I~f~nVs~~Y~~----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred eEEEEEEEEEeCC----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHH
Confidence 4889999999863 23579999999999999999999999999999999999985 28999999998542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.+++++||||++.+|+. ||||||.... ..++ +.+.++++..+|.+ -.|+.+|+ ....|||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSg 1356 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSN 1356 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCH
Confidence 25789999999999987 9999996321 1233 45677777777743 46777775 2356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+|||||++||..+...|.+.|++..+ ++|||+++|.++ ....||+|++|++|++++.|
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVE--ALLECQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998754 799999999973 45569999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1434 ~p~~Ll 1439 (1490)
T TIGR01271 1434 SIQKLL 1439 (1490)
T ss_pred CHHHHH
Confidence 987654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=284.10 Aligned_cols=221 Identities=23% Similarity=0.258 Sum_probs=194.3
Q ss_pred eEEEEEEEEEeecCC------------------cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 045930 2 YLVWEEVTVVVPNFG------------------SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV 63 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~------------------~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~ 63 (661)
.+..+|++..++.+. +.....+|+||||++++||.+||+|+|||||||||++|+|.++|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 567888888766431 123457999999999999999999999999999999999999994
Q ss_pred eeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 045930 64 MTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143 (661)
Q Consensus 64 ~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~ 143 (661)
+|+|.++|+-.....-.+ .+.|.+|.+||+.+.+.+. ++++++.+++++++++.-+|.+..|.++.
T Consensus 81 -~G~v~v~G~v~~li~lg~-------Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk--- 146 (249)
T COG1134 81 -SGKVKVTGKVAPLIELGA-------GFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK--- 146 (249)
T ss_pred -CceEEEcceEehhhhccc-------CCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh---
Confidence 999999997532211112 3457899999999987763 67899999999999999999999999985
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.+|.||+-|++.|.+.-.+|++|++||-.+-.|+.=+++..+.++++.++++|||+++|++ ..+.++||++++|++|
T Consensus 147 --tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 147 --TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG 223 (249)
T ss_pred --hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence 5999999999999999999999999999999999999999999999988889999999996 5899999999999999
Q ss_pred eEEEecCCCChhHHHHhc
Q 045930 224 ETVYFGEAKSAPTFFAEA 241 (661)
Q Consensus 224 ~~v~~G~~~~~~~~f~~~ 241 (661)
++++.|+++++.++|.+.
T Consensus 224 ~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 224 QIRMEGSPEEVIPAYEED 241 (249)
T ss_pred EEEEcCCHHHHHHHHHHh
Confidence 999999999999988764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=280.11 Aligned_cols=160 Identities=24% Similarity=0.326 Sum_probs=134.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH
Q 045930 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 19 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
..+.+|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|......++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH-----------
Confidence 35679999999999999999999999999999999963 278898888743222344778776
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTR--PQLLFLDEPTS 175 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~--P~lllLDEPts 175 (661)
.+.++.++|.. ..++.+ +.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 24567788865 366665 46999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 176 GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
|||+.++..+.+.|++++++|+|||+++|++. ++ +.+|++++|.+|+..+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~ 168 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKS 168 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCC
Confidence 99999999999999999878999999999974 44 6899999997655433
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=332.70 Aligned_cols=199 Identities=28% Similarity=0.437 Sum_probs=167.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ ++.+|+|+|++|++||+++|+|||||||||||++|+|..++. +|+|.+++. ..
T Consensus 312 ~l~~~~l~~~y~------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 312 LLKMEKVSAGYG------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred eEEEEeeEEEeC------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 377889988774 256999999999999999999999999999999999999874 899998742 25
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHH
Q 045930 82 VAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 82 i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
+||++|+. .+.+..||.+++.- .. .....+++.++++.+++. +..++.++ .|||||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La 442 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLA 442 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHH
Confidence 89999974 35566788777531 11 112345688999999996 46788775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE-EecCCCC
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKS 233 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~~~ 233 (661)
++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+ ..+..+||++++|++|+++ +.|+.++
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~ 514 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLED 514 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHH
Confidence 9999999999999999999999999999999987 34 999999996 6788999999999999997 7787654
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=269.73 Aligned_cols=144 Identities=31% Similarity=0.439 Sum_probs=131.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|+ +.+
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~------~~i 65 (144)
T cd03221 1 IELENLSKTYGG------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST------VKI 65 (144)
T ss_pred CEEEEEEEEECC------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe------EEE
Confidence 468899987742 3699999999999999999999999999999999999987 4899999985 468
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++| ||+||+||++||++|+
T Consensus 66 ~~~~~-----------------------------------------------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 66 GYFEQ-----------------------------------------------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred EEEcc-----------------------------------------------------------CCHHHHHHHHHHHHHh
Confidence 99998 8999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
.+|+++++||||+|||+.++..+.+.|+++ ++|||+++|++ +++.+++|++++|++|+
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999987 47999999996 57888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=278.16 Aligned_cols=218 Identities=28% Similarity=0.416 Sum_probs=178.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
+..+|+++.+.+ +....+++|+++|+++.+|+++.|+|.||||||||+|+|+|.+.+ .+|+|.++|.+...
T Consensus 2 i~~~~~~~~f~~-g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~---t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 2 ISLSNATKTFFK-GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP---TSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred cccccceeeecC-CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc---CCceEEECceecccCCHHH
Confidence 355677776643 444568899999999999999999999999999999999999988 49999999987642
Q ss_pred ccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCccccccCHH
Q 045930 78 DYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNN---EEITDVIEEAITE--MGLEDCADRLIGNWHWRGISGG 150 (661)
Q Consensus 78 ~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~d~~vg~~~~~~LSgG 150 (661)
+...++-|+||+ ...+.||+.||+..+..-.-.++.+. +..++.-.+-++. +||++..++.+|- ||||
T Consensus 78 RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGG 152 (263)
T COG1101 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGG 152 (263)
T ss_pred HhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccch
Confidence 224578899997 46899999999998754211122222 2223333444555 4778999999985 9999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||-++++.|.++.|+||+|||-|++|||.++..+++.=.++.++ +.|.+++||.. ....++-+|+++|++|+||.+-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999999999999999999999998765 78999999996 5789999999999999999764
Q ss_pred C
Q 045930 230 E 230 (661)
Q Consensus 230 ~ 230 (661)
.
T Consensus 232 ~ 232 (263)
T COG1101 232 T 232 (263)
T ss_pred c
Confidence 3
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=328.46 Aligned_cols=198 Identities=24% Similarity=0.354 Sum_probs=166.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+|.+++ .+|+|.+ |.. -.
T Consensus 319 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p---~~G~i~~-~~~-----~~ 383 (635)
T PRK11147 319 VFEMENVNYQID------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA---DSGRIHC-GTK-----LE 383 (635)
T ss_pred eEEEeeeEEEEC------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEE-CCC-----cE
Confidence 378889998774 25699999999999999999999999999999999999887 4899998 432 25
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.++ .|||||||||+||+
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~ 453 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLAR 453 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHH
Confidence 99999985 5889999999998753210 111 1234578899999995 56788775 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEe
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-GGETVYF 228 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G~~v~~ 228 (661)
+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||. ..+..+||++++++ +|+++.+
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEc
Confidence 999999999999999999999999999999876 45999999995 57889999999998 7997643
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=343.87 Aligned_cols=221 Identities=26% Similarity=0.455 Sum_probs=199.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
+..++++..+.. .+.+++++|+.|++||+.+++|+|||||||++|+|+|..++ .+|++.++|.....
T Consensus 565 ~~~~~L~k~y~~-----~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~---t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 565 LVLNNLSKVYGG-----KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP---TSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred EEEcceeeeecc-----hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC---CcceEEEecCccccccchh
Confidence 345566665542 11289999999999999999999999999999999999988 48999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.+||+||+|.+.+.+|.||++.+.+++| +..+++.++.++.+++.+||.+.+|+.++. +|||+|||++
T Consensus 637 ~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~-----ySgG~kRkLs 708 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRT-----YSGGNKRRLS 708 (885)
T ss_pred hhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhh-----CCCcchhhHH
Confidence 3567999999999999999999999999987 567788888999999999999999999875 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhH
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPT 236 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~ 236 (661)
+|.|++.+|++++|||||+|+||.++..+.++++++.++|+.||.|||.. +|...+|||+.+|.+|++...|++++.+.
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999999999999999999888999999995 79999999999999999999999998887
Q ss_pred HHHh
Q 045930 237 FFAE 240 (661)
Q Consensus 237 ~f~~ 240 (661)
.|..
T Consensus 788 rfG~ 791 (885)
T KOG0059|consen 788 RYGS 791 (885)
T ss_pred hcCC
Confidence 6643
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=276.34 Aligned_cols=156 Identities=26% Similarity=0.411 Sum_probs=135.2
Q ss_pred EEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEE
Q 045930 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYV 85 (661)
Q Consensus 6 ~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv 85 (661)
.|+++.+. ++.+++|+ +++++||+++|+||||||||||+|+|+|++++. +|+|.++|.. ++|+
T Consensus 4 ~~l~~~~~------~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~ 66 (177)
T cd03222 4 PDCVKRYG------VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYK 66 (177)
T ss_pred CCeEEEEC------CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEE
Confidence 46776653 25688885 899999999999999999999999999999874 8999999853 7888
Q ss_pred ecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCC
Q 045930 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRP 165 (661)
Q Consensus 86 ~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P 165 (661)
+|+.. ||||||||++||++|+.+|
T Consensus 67 ~q~~~--------------------------------------------------------LSgGq~qrv~laral~~~p 90 (177)
T cd03222 67 PQYID--------------------------------------------------------LSGGELQRVAIAAALLRNA 90 (177)
T ss_pred cccCC--------------------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 88532 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCchHHHhhcCeEEEEeCCeEEEe--cCCCChh
Q 045930 166 QLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIHQPSSEVFALFDDLFLLSGGETVYF--GEAKSAP 235 (661)
Q Consensus 166 ~lllLDEPtsGLD~~~~~~i~~~L~~la~~g-~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~--G~~~~~~ 235 (661)
++++|||||+|||+.++..+.+.|+++++++ .|||+++|++ .++.++||++++|+++-.++. |++..+.
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 9999999999999999999999999998775 9999999996 578889999999998766655 6655433
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=262.85 Aligned_cols=191 Identities=25% Similarity=0.417 Sum_probs=167.8
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---c
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---L 77 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~ 77 (661)
+.++.+|++...+ +..+|.|+|++|.+||++-|||||||||||||..+.|.+.+....+|++++|++... .
T Consensus 1 ~~l~l~nvsl~l~------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa 74 (213)
T COG4136 1 GMLCLKNVSLRLP------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA 74 (213)
T ss_pred CceeeeeeeecCC------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch
Confidence 4678899986543 467999999999999999999999999999999999999888889999999998754 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++++|..+||+.+||.++|.+|+.|+. |.+...+.+++.++..+++.||+...++-.. .||||||-||++
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----tlSGGQrARvaL 145 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDPA-----TLSGGQRARVAL 145 (213)
T ss_pred hhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcChh-----hcCcchHHHHHH
Confidence 4678999999999999999999999874 4445555677789999999999998888664 699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEecCC
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-IAHDGRTIISSIHQP 206 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~-la~~g~tvi~s~Hq~ 206 (661)
-|+|+..|+.++||||+|.||.+-+.+..+..-. +...|..+|.+|||.
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 9999999999999999999999999999887654 444599999999995
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=329.73 Aligned_cols=197 Identities=25% Similarity=0.348 Sum_probs=160.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.+++ ++.+
T Consensus 452 i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~i 517 (659)
T TIGR00954 452 IKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGKL 517 (659)
T ss_pred EEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCcE
Confidence 788999987642 246999999999999999999999999999999999998773 79998764 3569
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC----ccccccCHHHHHHHHHH
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN----WHWRGISGGEKKRLSIA 158 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~----~~~~~LSgGerqRvsIa 158 (661)
+||+|++.+++. |++||+.+........ .....+++++++++.+||.+..++..|- .....||||||||++||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iA 594 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMA 594 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHH
Confidence 999999988887 9999998754221000 0011134578889999998766553321 12357999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
|+|+.+|++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ ..+.+|++++|+
T Consensus 595 Ral~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 595 RLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 999999999999999999999999999998876 3899999999974 458899999997
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=326.13 Aligned_cols=201 Identities=23% Similarity=0.378 Sum_probs=163.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.+++. ..
T Consensus 508 ~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p---~~G~I~~~~~------~~ 573 (718)
T PLN03073 508 IISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP---SSGTVFRSAK------VR 573 (718)
T ss_pred eEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCceEEECCc------ee
Confidence 3788999988742 24699999999999999999999999999999999999987 4899998752 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
+||++|+. ...+++.++.........+ ... ++++.++++.+|+.+ ..++.++ .|||||||||+||++
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~-----~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCcc-----ccCHHHHHHHHHHHH
Confidence 99999985 3455666664332211111 111 346788999999974 6677664 599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE-EecCCC
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAK 232 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~~ 232 (661)
|+.+|++|||||||+|||+.++..+++.|++. +| |||++|||+ ..+..+||++++|++|+++ +.|+.+
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 99999999999999999999999998888765 34 999999996 5788999999999999998 677644
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=324.86 Aligned_cols=203 Identities=26% Similarity=0.400 Sum_probs=163.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|+++||++.++ .+.+|+||||+|++||++||+||||||||||||+|+|..+++ +|+|.++|.. .+
T Consensus 2 i~i~nls~~~g------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~------~i 66 (638)
T PRK10636 2 IVFSSLQIRRG------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW------QL 66 (638)
T ss_pred EEEEEEEEEeC------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC------EE
Confidence 78999999885 257999999999999999999999999999999999998874 8999998742 48
Q ss_pred EEEecCCCCCCCCCHHHHHHHHH-----------------------hcCC-CCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 045930 83 AYVTQENIMLGTLTVRETIAYSA-----------------------HLRL-PSNMNNEEITDVIEEAITEMGLE-DCADR 137 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~-----------------------~l~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~d~ 137 (661)
+|++|++... ..|+.+.+.-.. .+.. .......+.+.+++++++.+|+. +..++
T Consensus 67 ~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 145 (638)
T PRK10636 67 AWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER 145 (638)
T ss_pred EEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC
Confidence 8999865333 246555443110 0000 00001112346788999999997 57788
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||. ..+..+||++
T Consensus 146 ~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i 216 (638)
T PRK10636 146 PVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKI 216 (638)
T ss_pred chh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEE
Confidence 776 49999999999999999999999999999999999999999998876 56999999996 5788999999
Q ss_pred EEEeCCeEE-EecC
Q 045930 218 FLLSGGETV-YFGE 230 (661)
Q Consensus 218 ~lL~~G~~v-~~G~ 230 (661)
++|++|+++ |.|+
T Consensus 217 ~~L~~G~i~~~~g~ 230 (638)
T PRK10636 217 IHIEQQSLFEYTGN 230 (638)
T ss_pred EEEeCCEEEEecCC
Confidence 999999986 5554
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=350.50 Aligned_cols=206 Identities=25% Similarity=0.358 Sum_probs=168.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++. .+++.+|+|+|+++++||.++|+||||||||||+++|.|.+++. +|.+. ..++.
T Consensus 614 ~I~~~~vsF~y~~---~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~-------~~~~~ 680 (1495)
T PLN03232 614 AISIKNGYFSWDS---KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV-------VIRGS 680 (1495)
T ss_pred cEEEEeeEEEcCC---CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE-------EecCc
Confidence 4789999998863 12357999999999999999999999999999999999999873 66542 12457
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSgGerqR 154 (661)
++||+|++.+++. |++|||.|+.. .++ ++++++++..+| .+-.+|.+|+.+ ..||||||||
T Consensus 681 Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQR 748 (1495)
T PLN03232 681 VAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQR 748 (1495)
T ss_pred EEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHH
Confidence 9999999999976 99999998631 223 345555555554 344578888643 4699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI-LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~-L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++||||+.++|+|++||||||+||+.++..+++. ++.+ .+|+|+|++||+++ ....+|+|++|++|++++.|+.++
T Consensus 749 IaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999998765 5544 35899999999973 567899999999999999998765
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
..
T Consensus 826 L~ 827 (1495)
T PLN03232 826 LS 827 (1495)
T ss_pred HH
Confidence 43
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=349.82 Aligned_cols=205 Identities=24% Similarity=0.375 Sum_probs=170.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-eEEEECCeecccccC
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT-GNVLLNGKKRRLDYG 80 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~-G~i~~~g~~~~~~~~ 80 (661)
.++++|+++.++. ..++.+|+|+|+++++||.++|+||||||||||+++|.|.+++ .+ |+|.+. +
T Consensus 614 ~I~~~nvsf~y~~---~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~---~~GG~I~l~--------~ 679 (1622)
T PLN03130 614 AISIKNGYFSWDS---KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVVIR--------G 679 (1622)
T ss_pred ceEEEeeEEEccC---CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc---CCCceEEEc--------C
Confidence 4789999998853 1235699999999999999999999999999999999999987 47 898753 4
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSgGerq 153 (661)
.++||+|++.+++. ||+|||.|+.. .+ +++++++++..+|. +-.+|.+|+.+ ..|||||||
T Consensus 680 ~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQKQ 747 (1622)
T PLN03130 680 TVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQKQ 747 (1622)
T ss_pred eEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHHHH
Confidence 69999999999875 99999998632 22 24566666666654 34577888643 469999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
|++||||+.++|+|++||||||+||+.++..+++ .++.+. +|+|+|++||++ .....+|+|++|++|++++.|+.+
T Consensus 748 RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 748 RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999998875 566553 589999999997 467789999999999999999876
Q ss_pred Chh
Q 045930 233 SAP 235 (661)
Q Consensus 233 ~~~ 235 (661)
+..
T Consensus 825 eL~ 827 (1622)
T PLN03130 825 ELS 827 (1622)
T ss_pred HHH
Confidence 643
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=262.98 Aligned_cols=221 Identities=20% Similarity=0.331 Sum_probs=189.9
Q ss_pred EEEEEEEEEeecCC---cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---
Q 045930 3 LVWEEVTVVVPNFG---SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~---~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--- 76 (661)
|+.+||+.++.... ..+...+++.|||++++|+.+||+|.||||||||.++|+|..+| ++|+|++||++..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~~D 81 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCccccccc
Confidence 56778877654311 12335689999999999999999999999999999999999998 4999999998753
Q ss_pred --cccCeEEEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccccccCHHH
Q 045930 77 --LDYGGVAYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 77 --~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~LSgGe 151 (661)
.+.+.|-+++||+ .+.|.+.+.+-|....++ ...++.+++.+++-+.|+.+|| .+.+|-++ +.||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccccch-----hhcCchh
Confidence 2346799999997 477888888888877654 4567888889999999999998 45666655 4699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||++||||+.+|+|++.||..++||...+-+++++.-+|.++ |.+-|.++.+. ..+..+.|+|++|++|++|+.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999875 99999999996 58899999999999999999999
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
+.++
T Consensus 234 t~~v 237 (267)
T COG4167 234 TADV 237 (267)
T ss_pred hhhh
Confidence 8754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=319.95 Aligned_cols=203 Identities=25% Similarity=0.343 Sum_probs=161.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ .+.+|+||||++++||+++|+|||||||||||++|+|..++. +|+|.++|.. .
T Consensus 3 ~l~i~~ls~~~~------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~------~ 67 (635)
T PRK11147 3 LISIHGAWLSFS------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL------I 67 (635)
T ss_pred EEEEeeEEEEeC------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC------E
Confidence 488999999885 256999999999999999999999999999999999998874 8999998631 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHH------------------------------hcC--CCCCCCHHHHHHHHHHHHHHc
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSA------------------------------HLR--LPSNMNNEEITDVIEEAITEM 129 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~------------------------------~l~--~~~~~~~~~~~~~v~~~l~~l 129 (661)
++|++|++......+|.+++..+. .+. +. .....+.+.+++++++.+
T Consensus 68 ~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 68 VARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhC
Confidence 678888654333456666542110 000 00 000112345788999999
Q ss_pred CCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 045930 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209 (661)
Q Consensus 130 gL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~ 209 (661)
|+.. ++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++|||+ ..
T Consensus 147 gl~~--~~~~~-----~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~ 215 (635)
T PRK11147 147 GLDP--DAALS-----SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SF 215 (635)
T ss_pred CCCC--CCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HH
Confidence 9963 66654 599999999999999999999999999999999999999999999873 5999999996 57
Q ss_pred HHhhcCeEEEEeCCeEE-EecCC
Q 045930 210 VFALFDDLFLLSGGETV-YFGEA 231 (661)
Q Consensus 210 i~~~~D~v~lL~~G~~v-~~G~~ 231 (661)
+..+||+|++|++|+++ |.|+.
T Consensus 216 l~~~~d~i~~L~~G~i~~~~g~~ 238 (635)
T PRK11147 216 IRNMATRIVDLDRGKLVSYPGNY 238 (635)
T ss_pred HHHhcCeEEEEECCEEEEecCCH
Confidence 88999999999999987 44653
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=260.49 Aligned_cols=151 Identities=37% Similarity=0.614 Sum_probs=135.3
Q ss_pred EEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----cc
Q 045930 5 WEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DY 79 (661)
Q Consensus 5 ~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~ 79 (661)
++++++.++. +.+++++|+++++||+++|+||||||||||+++|+|.+++ ..|+|.++|.+... ..
T Consensus 2 ~~~~~~~~~~------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeCC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHHHH
Confidence 5788887642 3699999999999999999999999999999999999887 38999999986432 13
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.++|++| |||||+||++||+
T Consensus 73 ~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~~ 93 (157)
T cd00267 73 RRIGYVPQ-----------------------------------------------------------LSGGQRQRVALAR 93 (157)
T ss_pred hceEEEee-----------------------------------------------------------CCHHHHHHHHHHH
Confidence 56888888 8999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
+++.+|++++|||||+|||..++..+.+.|+++++.++|+++++|++ +++...||+++++++|+
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 99999999999999999999999999999999987789999999996 57888899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=315.90 Aligned_cols=180 Identities=28% Similarity=0.425 Sum_probs=153.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE-----------ECCeeccc-------ccCeE
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL-----------LNGKKRRL-------DYGGV 82 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~-----------~~g~~~~~-------~~~~i 82 (661)
..+|++++ .+++||++||+||||||||||||+|+|.++|+ .|+|. ++|++... ....+
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 46899999 99999999999999999999999999999885 89997 88875321 12346
Q ss_pred EEEecCCCCCCC---CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 83 AYVTQENIMLGT---LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 83 ~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
++.+|.....|. .||+|++... +.+++++++++.+||.+..|+.++ +|||||||||+||+
T Consensus 163 ~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~ 225 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAA 225 (590)
T ss_pred eecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 666665443333 3999998631 224578999999999998999886 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
+|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++ +++..++|++++|.++
T Consensus 226 al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 226 ALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999988 99999999996 5788999999999864
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=340.72 Aligned_cols=209 Identities=25% Similarity=0.388 Sum_probs=167.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++. ..+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++| .
T Consensus 636 ~i~~~~~~~~~~~----~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g--------~ 700 (1522)
T TIGR00957 636 SITVHNATFTWAR----DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVHMKG--------S 700 (1522)
T ss_pred cEEEEEeEEEcCC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc---CCcEEEECC--------E
Confidence 4788999988752 135699999999999999999999999999999999999987 489999987 4
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCccccccCHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIE--EAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++||+|++.+++ .||+||+.|+.. .+.++.++.++ ++.+.++. .+-.+|.+|+. ...||||||||++||
T Consensus 701 i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 701 VAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRVSLA 772 (1522)
T ss_pred EEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHHHHH
Confidence 899999998765 699999998632 22222222111 12233332 23345667653 467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA--HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la--~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||++.+|++++|||||++||+.++..+.+.+.+.. .+|+|+|++||++. ....+|+|++|++|+++..|+.++..
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHH
Confidence 99999999999999999999999999999997542 35799999999973 34559999999999999999876653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=290.05 Aligned_cols=215 Identities=29% Similarity=0.456 Sum_probs=178.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----L 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~ 77 (661)
+.|+++++.+. +.+++|+|+|+++++|+.+|++||||+||||++++|-..+.++ +|.|.++|++.+ .
T Consensus 263 v~F~~V~F~y~-----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~s 334 (497)
T COG5265 263 VAFINVSFAYD-----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334 (497)
T ss_pred EEEEEEEeecc-----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHH
Confidence 56788887764 4688999999999999999999999999999999999999885 999999998753 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHH--cCCCccccccccCccccccCHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~~--lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++-||.||||..||.+ |...|+.|+- ...+.+|+.+.++.. +.. -.+.+..|+.||+.+. .||||||||
T Consensus 335 lR~aIg~VPQDtvLFND-ti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl-klSggekqr 407 (497)
T COG5265 335 LRRAIGIVPQDTVLFND-TIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL-KLSGGEKQR 407 (497)
T ss_pred HHHHhCcCcccceehhh-hHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee-eccCchHHH
Confidence 35679999999999876 8999998862 234555544433322 111 1467788999997432 489999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+|||+++++|+||++||.||.||..+...+...|++++ .|+|.+++.|..+ ..--+|+|++|++|++++.|.-++.
T Consensus 408 vaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 408 VAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred HHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEeeCCEEEecCcHHHH
Confidence 999999999999999999999999999999999999998 4899999999975 3345899999999999999986554
Q ss_pred h
Q 045930 235 P 235 (661)
Q Consensus 235 ~ 235 (661)
+
T Consensus 485 l 485 (497)
T COG5265 485 L 485 (497)
T ss_pred H
Confidence 3
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=260.35 Aligned_cols=188 Identities=27% Similarity=0.400 Sum_probs=162.8
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc--
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD-- 78 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~-- 78 (661)
|.|+-+||+.... .+.++.++||++.+||++-|.|||||||||||++|+|+..|. +|+|.++|.+....
T Consensus 1 ~~L~a~~L~~~R~------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~ 71 (209)
T COG4133 1 MMLEAENLSCERG------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRE 71 (209)
T ss_pred CcchhhhhhhccC------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchh
Confidence 3466677776543 468999999999999999999999999999999999999984 89999999875432
Q ss_pred --cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 79 --YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 79 --~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.+.+-|+-..+.+=+.|||.|||.|-..+.-. . ....+.+.++.+||....|.+++. ||-||||||+
T Consensus 72 ~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~~-----LSAGQqRRvA 140 (209)
T COG4133 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVA 140 (209)
T ss_pred hHHHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchhh-----cchhHHHHHH
Confidence 24577888888888999999999998775421 1 134588999999999999999874 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
|||-+++.+++.|||||+++||......+-..+..-+++|-.||.+||||..
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999998888889999999999853
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=254.70 Aligned_cols=213 Identities=25% Similarity=0.363 Sum_probs=165.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe---ecc---
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRR--- 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~---~~~--- 76 (661)
|+.++++..|.. .+-.+||||.+.|||+++|+|+|||||||||+||++++.|. .|+|.+... +..
T Consensus 7 L~V~~lsk~Yg~------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 7 LSVSGLSKLYGP------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred eeehhhhhhhCC------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhh
Confidence 455666655532 34678999999999999999999999999999999999884 899988643 221
Q ss_pred --------cccCeEEEEecCCC--CCC----CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 045930 77 --------LDYGGVAYVTQENI--MLG----TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW 142 (661)
Q Consensus 77 --------~~~~~i~yv~Q~~~--l~~----~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~ 142 (661)
..+..-|+|.|+|. +-. .-.+-|-++-... .....+++...++++++.++..+ + +.
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~------RHYG~iR~~a~~WL~~VEI~~~R---i-DD 147 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA------RHYGNIRAEAQDWLEEVEIDLDR---I-DD 147 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh------hhhhhHHHHHHHHHHhcccCccc---c-cC
Confidence 11345799999863 222 2233444332111 11234667788999999875321 1 12
Q ss_pred cccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 143 ~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
.++..|||++||+.|||-|++.|+++|+||||.|||..-+..+++.++.|.++ |.+++++|||. ..+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 45789999999999999999999999999999999999999999999999876 99999999996 45667899999999
Q ss_pred CCeEEEecCCCChh
Q 045930 222 GGETVYFGEAKSAP 235 (661)
Q Consensus 222 ~G~~v~~G~~~~~~ 235 (661)
+|++++.|-++.++
T Consensus 227 ~g~vve~GLTDrvL 240 (258)
T COG4107 227 QGQVVESGLTDRVL 240 (258)
T ss_pred CCCEeccccccccc
Confidence 99999999877654
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=298.87 Aligned_cols=204 Identities=29% Similarity=0.422 Sum_probs=169.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++.+|++..++ .+.+++|+|+++.+|+.+||+|+||||||||||+|+|...+. +|+|...+. -+
T Consensus 3 ~i~~~~ls~~~g------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~~ 67 (530)
T COG0488 3 MITLENLSLAYG------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------LR 67 (530)
T ss_pred eEEEeeeEEeeC------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------ce
Confidence 578899999884 478999999999999999999999999999999999999874 899987532 35
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcC-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCcc
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLR-------------LPSN--------------MNNEEITDVIEEAITEMGLEDC 134 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~ 134 (661)
++|++|++.+.+..||.+.+.-+..-. ++.. ...-+.+.++..++..+|+.+.
T Consensus 68 v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 999999999999999999887543200 0000 0001123577888899999877
Q ss_pred ccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 045930 135 ADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF 214 (661)
Q Consensus 135 ~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~ 214 (661)
++.++ .||||||.||++|++|+.+|++|+|||||+.||..+..-+-+.|++. +| |||++||| +..+-+.|
T Consensus 148 -~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 148 -DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred -cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 88876 49999999999999999999999999999999999999999998854 46 99999999 78899999
Q ss_pred CeEEEEeCCeEE-EecC
Q 045930 215 DDLFLLSGGETV-YFGE 230 (661)
Q Consensus 215 D~v~lL~~G~~v-~~G~ 230 (661)
++|+-++.|++. |.|.
T Consensus 218 t~I~~ld~g~l~~y~Gn 234 (530)
T COG0488 218 THILELDRGKLTPYKGN 234 (530)
T ss_pred hheEEecCCceeEecCC
Confidence 999999999865 4443
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=333.86 Aligned_cols=193 Identities=23% Similarity=0.393 Sum_probs=155.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+|+|+|+++++||+++|+|||||||||||++|+|.+++ .+|+|.++| .++||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~---~~G~i~~~g--------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP---SEGKIKHSG--------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECC--------EEEEEeCCCccCCc-cHHHH
Confidence 4689999999999999999999999999999999999987 489999987 38999999998875 99999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHH--HHHHHcC-CCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIE--EAITEMG-LEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGL 177 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~--~~l~~lg-L~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGL 177 (661)
+.|+... ..+..++.++ .+.+.+. +.+..+|.+|+. ...||||||||++||||++.+|++++|||||+||
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9987421 1111111111 1112221 122234566653 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 178 DSAAAFFVVKI-LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 178 D~~~~~~i~~~-L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
|+.++..+.+. ++++. +|+|+|++||++. .+ ..||++++|++|+++..|+.++..
T Consensus 580 D~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999974 66665 4899999999974 34 569999999999999999876653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=264.69 Aligned_cols=196 Identities=23% Similarity=0.275 Sum_probs=136.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCC--------CC-CceeeEEEECCeecccccCeEEEEecCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL-DALAGRLS--------GN-VVMTGNVLLNGKKRRLDYGGVAYVTQEN 89 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL-~~LaG~~~--------~~-~~~~G~i~~~g~~~~~~~~~i~yv~Q~~ 89 (661)
+..+|+|||+++++||+++|+||||||||||+ ..+...-+ +. ....|.+... +.........++..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKP-DVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcc-ccccccCCCceEEecCC
Confidence 46799999999999999999999999999995 44432000 00 0000100000 00001112234444443
Q ss_pred C--CCCCCCHH---HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhh
Q 045930 90 I--MLGTLTVR---ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILT 163 (661)
Q Consensus 90 ~--l~~~lTV~---E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~ 163 (661)
. +.+..+|. |...+...+. ..++..++ .+.++.+||.+ ..++.+. .||||||||++||++|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAP-----TLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccC-----cCCHHHHHHHHHHHHHHh
Confidence 2 23444554 3222221111 12222333 56899999976 4677664 599999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEec
Q 045930 164 RP--QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFG 229 (661)
Q Consensus 164 ~P--~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G 229 (661)
+| ++++|||||+|||+.++..+.+.|++++++|.|||+++|++. ++ ..||++++| ++|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 98 599999999999999999999999999888999999999973 44 689999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=326.39 Aligned_cols=189 Identities=29% Similarity=0.431 Sum_probs=149.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++ +.++|++|++.+++ .||+||
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~~~l~~-~Tv~en 740 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQAWIMN-ATVRGN 740 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCCCccCC-CcHHHH
Confidence 56999999999999999999999999999999999999873 8999863 46999999998775 699999
Q ss_pred HHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 101 IAYSAHLRLPSNMNNEEITD-----VIEEAITEM--GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
+.|... ...+..++ .+++.++.+ |+. +.+|. ....||||||||++|||||+.+|++++||||
T Consensus 741 I~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~~----t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP 809 (1560)
T PTZ00243 741 ILFFDE------EDAARLADAVRVSQLEADLAQLGGGLE----TEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDP 809 (1560)
T ss_pred HHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccch----HHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 998521 11111111 123334444 443 33332 2357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 174 TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|++||+.++..+++.+.....+|+|+|++||++. ..+.+|+|++|++|++++.|+.++.
T Consensus 810 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 810 LSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999988754322235899999999973 4467999999999999999987653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=306.23 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=147.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-----c
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-----R 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-----~ 76 (661)
.|+++|+++.+.. +.+|+|+|+++++||.+||+|||||||||||++|+|+...+...+|+|.+.++.. .
T Consensus 177 ~I~i~nls~~y~~------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 177 DIHMENFSISVGG------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eEEEceEEEEeCC------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 4788999998842 4599999999999999999999999999999999997411112245554322210 0
Q ss_pred c--------------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHH-------------------HHHHHHH
Q 045930 77 L--------------DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNE-------------------EITDVIE 123 (661)
Q Consensus 77 ~--------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~-------------------~~~~~v~ 123 (661)
. ..+.++|++|++.+... ++.++.... . ....+.+ +.++++.
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~-~---~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGA-N---KDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc-c---ccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 0 00112333332211110 111110000 0 0011111 2344566
Q ss_pred HHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Q 045930 124 EAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202 (661)
Q Consensus 124 ~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s 202 (661)
++++.+|+. +..++.++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++
T Consensus 326 ~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 326 SILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 777788885 45666664 59999999999999999999999999999999999999999999887 6899999
Q ss_pred ecCCchHHHhhcCeEEEEeCCeEE-EecCC
Q 045930 203 IHQPSSEVFALFDDLFLLSGGETV-YFGEA 231 (661)
Q Consensus 203 ~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~ 231 (661)
+|+. ..+..+||++++|++|+++ |.|+.
T Consensus 398 sHd~-~~l~~~~d~i~~l~~g~i~~~~g~~ 426 (718)
T PLN03073 398 SHAR-EFLNTVVTDILHLHGQKLVTYKGDY 426 (718)
T ss_pred ECCH-HHHHHhCCEEEEEECCEEEEeCCCH
Confidence 9995 6788999999999999996 56653
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=239.38 Aligned_cols=132 Identities=46% Similarity=0.706 Sum_probs=118.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCCCCCCCCHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
|+|||+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999877 49999999987643 256799999999999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
|+ ...++++++++.+++.+..++.++.. ...||||||||++||+||+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 23456889999999999888888643 36899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=257.99 Aligned_cols=195 Identities=23% Similarity=0.304 Sum_probs=151.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCC-----CC--Ccee------eEEEECCeecccc-c--
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-----GRLS-----GN--VVMT------GNVLLNGKKRRLD-Y-- 79 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-----G~~~-----~~--~~~~------G~i~~~g~~~~~~-~-- 79 (661)
..-|+|||..++.|++++|.|+||||||||++.+. .... +. .... --|.++..+.... +
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 1110 00 0011 1355665442100 0
Q ss_pred ----------------------------CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC
Q 045930 80 ----------------------------GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL 131 (661)
Q Consensus 80 ----------------------------~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 131 (661)
..+.|..++...+..+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 01456666666678899999999876542 12456789999999
Q ss_pred Cc-cccccccCccccccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 132 ED-CADRLIGNWHWRGISGGEKKRLSIALEILTR---PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 132 ~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~---P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+ ..++.+ +.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++.
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 87 466665 46999999999999999996 7999999999999999999999999999988999999999973
Q ss_pred hHHHhhcCeEEEE------eCCeEEEecCC
Q 045930 208 SEVFALFDDLFLL------SGGETVYFGEA 231 (661)
Q Consensus 208 ~~i~~~~D~v~lL------~~G~~v~~G~~ 231 (661)
.+ +.+|+++.| ++|++++.|++
T Consensus 234 -~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 -VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 44 679999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=236.85 Aligned_cols=210 Identities=24% Similarity=0.323 Sum_probs=171.0
Q ss_pred eEEEEEEEEEeecC-CcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee--c---
Q 045930 2 YLVWEEVTVVVPNF-GSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK--R--- 75 (661)
Q Consensus 2 ~l~~~~l~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~--~--- 75 (661)
-|..+|++.++.-- ..|-.-++++|+||+++.||++++=|||||||||||++|-|.+.++ +|+|++.-.. .
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhh
Confidence 35677776654321 1233457999999999999999999999999999999999998874 8999885321 1
Q ss_pred --------ccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 76 --------RLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 76 --------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
..+++.+|||.|--...|.....|-++-.+--+ +.+.+..+.++.+++..+++.+..-.+. +...
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La----PaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA----PATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC----Cccc
Confidence 123567999999888888877777776655432 5778888899999999999976554443 2469
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
||||+|||.|||.++.+-+||+|||||+.||..++.-++++|++-+..|..+|=+-|| .+.-...+||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999998889999999999 3445568999998763
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=297.71 Aligned_cols=206 Identities=26% Similarity=0.402 Sum_probs=170.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|.++.-.. ......|+|||+++++|+++||+||-|||||+||.+|.|.++. .+|++.++|.
T Consensus 518 ~i~i~~~sfsW~~---~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDS---ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS-------- 583 (1381)
T ss_pred eEEEeeeeEecCC---CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe--------
Confidence 4567777776543 1234489999999999999999999999999999999999886 5999999885
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSgGerqR 154 (661)
++||+|++-+++. ||||||.|+..+ . +++.+++++...|++- -.|-+|+.+ -.||||||||
T Consensus 584 iaYv~Q~pWI~ng-TvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQKqR 651 (1381)
T KOG0054|consen 584 VAYVPQQPWIQNG-TVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQKQR 651 (1381)
T ss_pred EEEeccccHhhCC-cHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhHHHH
Confidence 8999999988876 999999997432 2 3456677776666543 345566532 3699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+++|||+-+|.+|++||.|.|.+|+.....+.+..-+-.-+++|+|.+|||. +..+.+|.|++|++|+++..|+.+|.
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHH
Confidence 9999999999999999999999999999998865444334589999999984 68889999999999999999998876
Q ss_pred h
Q 045930 235 P 235 (661)
Q Consensus 235 ~ 235 (661)
.
T Consensus 730 ~ 730 (1381)
T KOG0054|consen 730 L 730 (1381)
T ss_pred H
Confidence 5
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=296.45 Aligned_cols=213 Identities=22% Similarity=0.356 Sum_probs=176.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|.. ....+|+|||++|+|||.+||+|..|||||||+++|-++..+ .+|+|.+||.+...
T Consensus 1138 ~I~f~~~~~RYrp----~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~---~~G~I~IDgvdI~~igL~ 1210 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRP----NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP---AEGEILIDGVDISKIGLH 1210 (1381)
T ss_pred eEEEEEeEEEeCC----CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc---cCCeEEEcCeecccccHH
Confidence 5799999999864 235799999999999999999999999999999999999887 48999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.|++++.+||||.+|.. |||.||.=.. ..++++ +-++|+..+|.+ ..|+.+.+ ....+|-
T Consensus 1211 dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~Sv 1278 (1381)
T KOG0054|consen 1211 DLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDDE----IWEALERCQLKDVVSSLPGGLDSEVSE-GGENFSV 1278 (1381)
T ss_pred HHHhcCeeeCCCCceecC-ccccccCccc------ccCHHH----HHHHHHHhChHHHHhhCCcCCCceecC-CCccCCh
Confidence 26789999999999988 9999997221 233443 445555554433 35555543 2357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||.+++||||+++++||+|||.|++.|+.+-..|.++||+-=+ ++|||.+-|.... +.+ +|||+||++|+++++|
T Consensus 1279 GQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-Vmd-~DrVlVld~G~v~Efd 1355 (1381)
T KOG0054|consen 1279 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-VMD-SDRVLVLDAGRVVEFD 1355 (1381)
T ss_pred HHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-hhh-cCeEEEeeCCeEeecC
Confidence 999999999999999999999999999999999999999998543 6999999999753 443 8999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
+|.+..+
T Consensus 1356 sP~~Ll~ 1362 (1381)
T KOG0054|consen 1356 SPAELLS 1362 (1381)
T ss_pred ChHHHHh
Confidence 9876543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=244.83 Aligned_cols=164 Identities=24% Similarity=0.338 Sum_probs=130.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC------CceeeEEEECCeecc--cccCeEEEEecCCCCCCCCC
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN------VVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLT 96 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~------~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lT 96 (661)
+++++++++| +++|+||||||||||+++|+|...+. ....|++.++|+... ...+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6799999999 99999999999999999999987432 112356777776532 1246799999998665
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL----TRPQLLFLDE 172 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~----~~P~lllLDE 172 (661)
|. . . .+++++++++. .+..++.+ +.||||||||++||++++ .+|++++|||
T Consensus 89 ------~~--~-----~----~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--I-----I----SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--E-----E----ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 0 0 02356677766 44556655 469999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
||+|||+.++..+.+.|+++++ +.|||++||++. . .+.+|+++.+.
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~ 189 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVT 189 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEE
Confidence 9999999999999999999976 689999999973 3 47899999996
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=270.39 Aligned_cols=196 Identities=29% Similarity=0.390 Sum_probs=162.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.+.. .+.+++++|+.+.+|+.+||+||||+|||||||+|+|...+. +|+|.+.-. -.
T Consensus 321 vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------v~ 386 (530)
T COG0488 321 VLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------VK 386 (530)
T ss_pred eEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------eE
Confidence 3678888887642 368999999999999999999999999999999999988773 898887532 34
Q ss_pred EEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHH
Q 045930 82 VAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 82 i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+||..|+. .+.+..|+.|++.-.. | .. .+..+...|..+++.. ...++++ .||||||.||.+|+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~----~e~~~r~~L~~f~F~~~~~~~~v~-----~LSGGEk~Rl~La~ 452 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGF----P-DG----DEQEVRAYLGRFGFTGEDQEKPVG-----VLSGGEKARLLLAK 452 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhC----c-cc----cHHHHHHHHHHcCCChHHHhCchh-----hcCHhHHHHHHHHH
Confidence 89999986 4458889999987432 1 11 1567889999999953 4566665 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe-cC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF-GE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~-G~ 230 (661)
.++.+|.+|+|||||+.||..+...+.+.|.+. .-|||++||| ...+...+++++.+.+ ++..+ |.
T Consensus 453 ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 453 LLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCC
Confidence 999999999999999999999999999998876 3599999999 4789999999999998 54433 54
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-29 Score=236.99 Aligned_cols=194 Identities=28% Similarity=0.427 Sum_probs=168.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCCCCCCCCHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
|-.+|+++..||++-++|||||||||||-.++|+++. +|+|.++|++... ..+.-+|..|+..-...|.|.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 5679999999999999999999999999999999886 8999999998532 124568998887666678899
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh-----C--CCEEEEe
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT-----R--PQLLFLD 171 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~-----~--P~lllLD 171 (661)
..+... . +.++....++++-+.++|++...+.+ ..|||||-|||-+|...+. | .++|+||
T Consensus 91 ~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 91 HYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 888753 2 23566677889999999999888876 4699999999999987765 3 4799999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 172 EPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 172 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||.++||.+....+-+.|.++++.|.+||++.||.+ ...+.+|++++|+.|++...|.++++.
T Consensus 158 EP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 158 EPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999999999999999999975 688899999999999999999998865
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=256.82 Aligned_cols=201 Identities=24% Similarity=0.459 Sum_probs=171.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc------cCeEEEEecC---CCCCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD------YGGVAYVTQE---NIMLG 93 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~------~~~i~yv~Q~---~~l~~ 93 (661)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.+||++.... +..++|||.| +-++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 57899999999999999999999999999999997655 489999999975422 3579999997 46889
Q ss_pred CCCHHHHHHHHHhcCCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhCCCEEEE
Q 045930 94 TLTVRETIAYSAHLRLP-S-NMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFL 170 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllL 170 (661)
.++|.||+.++..-+.. . -.+....++.+++..+.+++.- -.+..++ .||||.+|||.||+.|..+|++|||
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEE
Confidence 99999999988322211 1 2455556678899999999853 4556665 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||||.|.|.-+..+|.++++++|++|++||++|.+. +|+..+||||++|++|+++..=+.+
T Consensus 426 DEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999995 6999999999999999998754444
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=241.50 Aligned_cols=186 Identities=17% Similarity=0.285 Sum_probs=130.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC----------------CCCC---ceee--EEEECCeec---
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----------------SGNV---VMTG--NVLLNGKKR--- 75 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~----------------~~~~---~~~G--~i~~~g~~~--- 75 (661)
++.++++++ |++++|+||||||||||+++|++.+ .++. ...+ +|.+++...
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 456888887 7899999999999999999998432 1110 0112 444544211
Q ss_pred ---c--cccCeEEEEecCCCCCC-CCCHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCccccccC
Q 045930 76 ---R--LDYGGVAYVTQENIMLG-TLTVRETIAYSAHLRLPSNMNN-EEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148 (661)
Q Consensus 76 ---~--~~~~~i~yv~Q~~~l~~-~lTV~E~l~~~~~l~~~~~~~~-~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 148 (661)
. ..++.++|++|+..+++ ..|..|...+...+.+...... ...+.++ .+.+++.+..+..+ +.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~~~-----~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQEM-----QQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccccc-----cccC
Confidence 0 11356899988877776 4677776666554433211000 0001122 23344554455554 4699
Q ss_pred HHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 149 GGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 149 gGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +++||+++|++ ++.++||++++|.
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999999974 5899999999999999999999999999966 78888888884 6889999999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-28 Score=242.03 Aligned_cols=177 Identities=19% Similarity=0.193 Sum_probs=135.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-cccCeEEEEecCCCCCCCCCHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-LDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
.+.+++++++ ++++|+||||||||||+++|.-. +|.+.. ...+++++++|+..+++.+|+.
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCCceE
Confidence 4678999987 89999999999999999999722 122111 1224688999998888999999
Q ss_pred HHHHHHHhcCCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh----CCCE
Q 045930 99 ETIAYSAHLRLP-----SNMNNEEITD--VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT----RPQL 167 (661)
Q Consensus 99 E~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~----~P~l 167 (661)
|.+.+....... .+...++... ..+++++.++|.+..++.++ .+|+|||||++||++++. +|++
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 987766543200 0111111111 12566677888887887764 599999999999999974 5799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
+++||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.+.||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999864 57888888995 68899999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=239.69 Aligned_cols=177 Identities=19% Similarity=0.247 Sum_probs=135.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe-ec-------ccccCeEEEEecCC---------CCCCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-KR-------RLDYGGVAYVTQEN---------IMLGTLT 96 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~-~~-------~~~~~~i~yv~Q~~---------~l~~~lT 96 (661)
..+++|+||||||||||+++|++.+.+. ..|++...|. +. ......+++++|++ .+.+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999997642 2355655554 11 11234799999985 3457889
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC--------------------ccccccccCccccccCHHHHHHHH
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--------------------DCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
|.+++......+...+ .++...+++.++++.+||. +..++.+ +.||||||||++
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~-----~~lS~G~~qr~~ 176 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL-----TELSGGQRSLVA 176 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc-----cccCHHHHHHHH
Confidence 9998865432211000 1223457788999999986 2233443 569999999999
Q ss_pred HHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 157 IALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 157 Ia~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
||++|+ .+|+++++||||+|||+.++..+.+.|+++++ |.|||++||++ ++.+.+|+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999998 57899999999999999999999999999964 89999999994 6888899999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-26 Score=230.82 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=126.8
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe----ecccccCeEEEEecCCCCCCCCCHHH
Q 045930 25 NGLTGYAE-PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK----KRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 25 ~~vs~~i~-~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~----~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++++|... +|++++|+|||||||||||++|++.+.+. ..+....+.. ........+++++|++.... ++.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r 93 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVER 93 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEE
Confidence 56666544 58999999999999999999999654221 1222222210 01122456899999863211 1211
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh----------CCCEEE
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT----------RPQLLF 169 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~----------~P~lll 169 (661)
. + +.+.++..+.+ .++..++.+..++.++ .||||||||++||++|+. +|++++
T Consensus 94 ~---------~-gl~~~~~~~~~--~l~~g~l~~~l~~~~~-----~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 94 S---------R-GLDYDQFTRIV--LLPQGEFDRFLARPVS-----TLSGGETFLASLSLALALSEVLQNRGGARLEALF 156 (213)
T ss_pred e---------c-CCCHHHHHHhh--hhhhcchHHHhcCCcc-----ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE
Confidence 1 1 23333322222 2344456666666654 599999999999999985 578999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|||||+|||+.+...+.+.|++++++|+|||++||++ +.+...+|+++++++|.
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 9999999999999999999999987799999999997 57888999999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=249.26 Aligned_cols=195 Identities=29% Similarity=0.440 Sum_probs=160.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++..+. .+..|++.|+.+++||-+.|.||||||||||+++|+|+.+-+ +|+|..- ....
T Consensus 392 ~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~~~ 457 (604)
T COG4178 392 GITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------ADSA 457 (604)
T ss_pred eeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CCCc
Confidence 5789999998764 357999999999999999999999999999999999999864 6777653 1245
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-ccccccCHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN-WHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~-~~~~~LSgGerqRvsIa~a 160 (661)
+-|+||.|.+... |.||.+.|..... ..+ .+.+.++|.++||.+..++.-+. ..-+.||+||||||++||.
T Consensus 458 ~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 458 LLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred eEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence 8999999998777 9999998753221 122 34588899999999888876442 1236799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
|+++|++++|||.|++||..+...+.+.|++-- .+.|||-+.|.| .+..+.++.+-+.
T Consensus 530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 530 LLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 999999999999999999999999999998743 269999999997 4677777766664
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=269.65 Aligned_cols=137 Identities=26% Similarity=0.396 Sum_probs=113.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHh---hCCC
Q 045930 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEIL---TRPQ 166 (661)
Q Consensus 91 l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~---~~P~ 166 (661)
.+...||.|+|.+...-........++..+++ ++++.+||.+. .++.+. .||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887542111112234556667 58899999876 677764 59999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEecCCCChh
Q 045930 167 LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS------GGETVYFGEAKSAP 235 (661)
Q Consensus 167 lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~------~G~~v~~G~~~~~~ 235 (661)
+++|||||+|||+.+...+++.|++++++|.|||+++|++ +.+ +.+|++++|. +|+++..|++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999998899999999997 455 8999999996 78999999987643
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=233.36 Aligned_cols=219 Identities=26% Similarity=0.406 Sum_probs=185.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-c----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-R---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~---- 76 (661)
.|+.+||++.-.. ....++||||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. .
T Consensus 257 vL~V~~L~v~~~~-----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~ 328 (501)
T COG3845 257 VLEVEDLSVKDRR-----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSP 328 (501)
T ss_pred EEEEeeeEeecCC-----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCH
Confidence 4778888875431 246799999999999999999999999999999999998763 69999999874 1
Q ss_pred --cccCeEEEEecCC---CCCCCCCHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccc
Q 045930 77 --LDYGGVAYVTQEN---IMLGTLTVRETIAYSAHLRLP----SNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRG 146 (661)
Q Consensus 77 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~ 146 (661)
.....++|||.|. .+.+.+|+.||+.+...-+-| .-....+.++...+++++++.... .+..+ +.
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a-----~~ 403 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPA-----RS 403 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcch-----hh
Confidence 1235799999986 478899999999887543211 124567788889999999998632 33333 56
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
||||.+||+-+||+|..+|++|++.+||.|||..++..+.+.|.++++.|+.|++++.+. +|++.++|||.+|.+|+++
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGRIV 482 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCcee
Confidence 999999999999999999999999999999999999999999999999999999999995 7999999999999999999
Q ss_pred EecCCCCh
Q 045930 227 YFGEAKSA 234 (661)
Q Consensus 227 ~~G~~~~~ 234 (661)
...+++++
T Consensus 483 ~~~~~~~~ 490 (501)
T COG3845 483 GIVPPEEA 490 (501)
T ss_pred cccccccC
Confidence 88877653
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-25 Score=222.22 Aligned_cols=165 Identities=21% Similarity=0.264 Sum_probs=123.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCceeeEEEECCeec--ccccCeEEEEecCC-----CCCCC
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALA----GRLSGNVVMTGNVLLNGKKR--RLDYGGVAYVTQEN-----IMLGT 94 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La----G~~~~~~~~~G~i~~~g~~~--~~~~~~i~yv~Q~~-----~l~~~ 94 (661)
..++++.+| +++|+|||||||||||++|. |...++ .|.+..+.... ......+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 776542 34443111111 12245699999987 34455
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH------HHHHHHHhhCCCEE
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR------LSIALEILTRPQLL 168 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR------vsIa~aL~~~P~ll 168 (661)
+||.|++.+. ... .+++.+ +..+ +.||+||+|| ++||++++.+|+++
T Consensus 91 ~~~~~~~~~~---------~~~----~~~~~~---------~~~~-----~~LS~G~~~~~~la~rlala~al~~~p~il 143 (204)
T cd03240 91 LAILENVIFC---------HQG----ESNWPL---------LDMR-----GRCSGGEKVLASLIIRLALAETFGSNCGIL 143 (204)
T ss_pred hhHhhceeee---------chH----HHHHHH---------hcCc-----cccCccHHHHHHHHHHHHHHHHhccCCCEE
Confidence 6888888642 112 223333 3333 4699999996 78999999999999
Q ss_pred EEeCCCCCCCHHHHH-HHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe-CC
Q 045930 169 FLDEPTSGLDSAAAF-FVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS-GG 223 (661)
Q Consensus 169 lLDEPtsGLD~~~~~-~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G 223 (661)
++||||++||+.++. .+.+.|++++++ |.|||+++|++ +....+|+++.|. +|
T Consensus 144 llDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~--~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 144 ALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE--ELVDAADHIYRVEKDG 199 (204)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH--HHHhhCCEEEEEeeCC
Confidence 999999999999999 999999999876 89999999996 3457899999996 44
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-25 Score=212.08 Aligned_cols=229 Identities=19% Similarity=0.201 Sum_probs=176.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcee-eEEEECCeec-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMT-GNVLLNGKKR-----R 76 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~-G~i~~~g~~~-----~ 76 (661)
|.++||+.++.+. . ...+++++||+++..||+-+++|.||||||-..|+|+|..+.+..++ ....+++.+. +
T Consensus 4 LDIrnL~IE~~Ts-q-G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 4 LDIRNLTIEFKTS-Q-GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred ccccceEEEEecC-C-CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 5678999998762 2 23579999999999999999999999999999999999877543222 2233444321 1
Q ss_pred c----ccCeEEEEecCCC--CCCCCCHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 77 L----DYGGVAYVTQENI--MLGTLTVRETIAYSAHLRLPSNMN---NEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 77 ~----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~l~~~~~~~---~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
. ..+.|++++|++. +-|.-+|...+.-..-...-.+.- -.-++.+.-++|..+|+.+..|-.-. ++.+|
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~S--YP~El 159 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRS--YPYEL 159 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHh--Ccchh
Confidence 1 1356899999974 566666655544332111101100 11245677889999999887776543 45689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v 226 (661)
.-||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||+.++||. ..+.+.||++-+|.-|+.+
T Consensus 160 TeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~ 238 (330)
T COG4170 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQTV 238 (330)
T ss_pred ccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEecccc
Confidence 99999999999999999999999999999999999999999999987 489999999996 5799999999999999999
Q ss_pred EecCCCChhH
Q 045930 227 YFGEAKSAPT 236 (661)
Q Consensus 227 ~~G~~~~~~~ 236 (661)
+.++.++.++
T Consensus 239 ESa~~e~l~~ 248 (330)
T COG4170 239 ESAPSEELVT 248 (330)
T ss_pred cccchhHHhc
Confidence 9998876553
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=252.35 Aligned_cols=124 Identities=26% Similarity=0.402 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhCC---CEEEE
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRP---QLLFL 170 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P---~lllL 170 (661)
+||.|++.|...++ . ..+..+.++.+||.+ ..++.++ .||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~--------~-i~~~l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP--------K-IARKLQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch--------h-hhHHHHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 79999999876542 1 123467899999986 4677664 59999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
||||+|||+.+...+++.|+++.++|.|||+++|++ ..+ ..+|+++.| ++|++++.|++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el 925 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEV 925 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHH
Confidence 999999999999999999999988899999999997 344 679999999 79999999986543
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=225.84 Aligned_cols=203 Identities=23% Similarity=0.287 Sum_probs=159.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|++|.+.. ..-=+..||+++++||++-|+|.||||||||++.|.|+.+|+ +|+|.+||++.+.
T Consensus 322 ~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~le 393 (546)
T COG4615 322 TLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLE 393 (546)
T ss_pred ceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHH
Confidence 5788888887753 223477899999999999999999999999999999999984 9999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++-.+-|+-|-.+|+.+- .+.+. ...+.++..++.+.|.+...-+=|+-..-.||.|||||++
T Consensus 394 dYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlA 458 (546)
T COG4615 394 DYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLA 458 (546)
T ss_pred HHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHH
Confidence 1333455555555554421 11111 1235688888888887644333333334579999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK-NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~-~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
+-.|++-+-+|+++||=.+.-||.-+..+.+.+- .+.+.|+||+.+||| +.-|..+||++.+.+|++++.-
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD--d~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD--DHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecC--chhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999887654 456679999999999 3689999999999999998654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=244.45 Aligned_cols=124 Identities=24% Similarity=0.374 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhh---CCCEEE
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILT---RPQLLF 169 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~---~P~lll 169 (661)
.+||.|.+.|...+. . ..+..++++.+||.. ..++.+ +.|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 468888888765432 1 123457889999976 356665 4699999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCC
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKS 233 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~ 233 (661)
|||||+|||+.++..+.+.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence 99999999999999999999999888999999999973 44 679999999 7999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=207.54 Aligned_cols=168 Identities=21% Similarity=0.246 Sum_probs=123.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--eeeE----EEECCeecccccCeEEEEecCCCCCCCCCH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV--MTGN----VLLNGKKRRLDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~----i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV 97 (661)
++++++.+.+| +.+|+|||||||||||++|.....+... ..|. +.-+| .....+.+.+|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~----~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDG----ESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCC----CCeEEEEEEEEcCCccCC---
Confidence 46788888888 8899999999999999999854332210 0121 00011 113457788887655441
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH----hhCCCEEEEeCC
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI----LTRPQLLFLDEP 173 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL----~~~P~lllLDEP 173 (661)
+ . ....+++++++++. .+..++.++ .||+|||||++||+++ +.+|++++||||
T Consensus 84 ------------~--~-~~~~~~~~~~~l~~---~~~~~~~~~-----~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 ------------P--L-CVLSQDMARSFLTS---NKAAVRDVK-----TLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred ------------c--C-CHHHHHHHHHHhcc---ccccCCccc-----ccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 0 1 11123567777776 566677664 5999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc---CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 174 TSGLDSAAAFFVVKILKNIAHD---GRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~---g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|+|||..++..+.+.|++++++ +.|||+++|++ .++.++ |+|-+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 9999999999999999998653 36899999997 456664 9999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=225.08 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=141.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~ 81 (661)
+.+++++.++. .+.+++|+++++.+||-++|+|+|||||||+|++|+|+..|. ..+=.+..-.+.... ..+.
T Consensus 76 vk~~sls~s~~------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 76 VKIESLSLSFH------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEPSEKQA 148 (614)
T ss_pred ceeeeeeeccC------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCCchHHH
Confidence 56777777764 367999999999999999999999999999999999998652 111111111111000 0000
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHh-cC----------------CCCCCCHHHHHHHHHHHHHHcCC-CccccccccCcc
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAH-LR----------------LPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWH 143 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~-l~----------------~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~ 143 (661)
+-++.+ +.-..+.-+.+-+. +. ....+..+..+.++-++|..+|. ++..++.+
T Consensus 149 v~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~---- 219 (614)
T KOG0927|consen 149 VQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV---- 219 (614)
T ss_pred HHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh----
Confidence 111110 00001111111000 00 00112333445567777777775 56777776
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+ .++++++|. .+.+-..|.+|+-|.++
T Consensus 220 -~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~-QDfln~vCT~Ii~l~~k 295 (614)
T KOG0927|consen 220 -KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS-QDFLNGVCTNIIHLDNK 295 (614)
T ss_pred -hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc-hhhhhhHhhhhheeccc
Confidence 46999999999999999999999999999999999999888888876532 288999998 46888999999999999
Q ss_pred eE-EEecCC
Q 045930 224 ET-VYFGEA 231 (661)
Q Consensus 224 ~~-v~~G~~ 231 (661)
+. .|.|+-
T Consensus 296 kl~~y~Gny 304 (614)
T KOG0927|consen 296 KLIYYEGNY 304 (614)
T ss_pred ceeeecCCH
Confidence 94 555653
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-23 Score=215.78 Aligned_cols=173 Identities=25% Similarity=0.353 Sum_probs=141.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAY 103 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 103 (661)
|+-=.+++..||+++++||||-||||+.++|||.++|+ +|+ .. .-.++|-||--.--...||++.+.-
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-----~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-----DLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-----cceEeecceeecCCCCCcHHHHHHH
Confidence 44455678889999999999999999999999999984 665 11 1347888886443456799998875
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 104 SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
...-+... .....++++-|.|++..|+.+. +|||||.|||+||.+|..++++++||||++-||+..+.
T Consensus 425 ~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 425 AIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred hhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 54322111 1234678888999999999885 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 184 FVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 184 ~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
.+.+.+++.+++ ++|.+++-||. ..+--+.||+++..
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 999999999875 79999999996 46667799998775
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-23 Score=222.86 Aligned_cols=197 Identities=20% Similarity=0.297 Sum_probs=152.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
+.++|+++.+.. +..++++++|-+..++-+|++||||+|||||||++.|.+.|. .|.|.-.-. ..+
T Consensus 390 i~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H------~~~ 455 (614)
T KOG0927|consen 390 IMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSH------NKL 455 (614)
T ss_pred EEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---ccccccccc------ccc
Confidence 456666665542 236899999999999999999999999999999999999884 787653321 224
Q ss_pred EEEecC--CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHH
Q 045930 83 AYVTQE--NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 83 ~yv~Q~--~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
++-.|. +.+.-..++-|++.-.. +++...+.+..++.++||. +..+..+ +.||+|||+||..|+
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~Gqr~rVlFa~ 522 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSDGQRRRVLFAR 522 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhcccccchhHHHHH
Confidence 444554 33444567777765321 1123345688999999998 4555555 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE-EEecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET-VYFGE 230 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~-v~~G~ 230 (661)
.++..|.+|+|||||+|||..+...+.+.|.+. .-+||.++||- -.|.+.++++.+..+|.+ .+.|+
T Consensus 523 l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 523 LAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred HHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCcc
Confidence 999999999999999999999999888888775 35899999996 478899999999987765 45554
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-23 Score=211.65 Aligned_cols=181 Identities=20% Similarity=0.237 Sum_probs=118.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC--------eecc--cccC--eEEEEecCCCC-CCCCCHH
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG--------KKRR--LDYG--GVAYVTQENIM-LGTLTVR 98 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g--------~~~~--~~~~--~i~yv~Q~~~l-~~~lTV~ 98 (661)
.++ +++|+|||||||||||++|++.+.+. .|++..++ .... .... .+.|..|++.. .-.-+++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 344 99999999999999999999987542 34433222 1100 0011 23444443221 1111111
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc---------ccC--------ccccccCHHHHHHHHHHHHH
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL---------IGN--------WHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~---------vg~--------~~~~~LSgGerqRvsIa~aL 161 (661)
+... ..+.. + +....+.++++++.+|++...... +.+ ..+..||||||||++||+++
T Consensus 97 ~~~~---~~~in-g--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 97 GGSS---SYRIN-G--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred CCce---EEEEC-C--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHH
Confidence 1110 00110 1 111234467888889985322111 111 12267999999999999999
Q ss_pred hhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCe
Q 045930 162 LTR----PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS-GGE 224 (661)
Q Consensus 162 ~~~----P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~-~G~ 224 (661)
+.+ |+++++||||+|||+.++..+.+.|++++++|.+||+++|++ ++.+.+|++++|. ++.
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~~~~ 236 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYRDQE 236 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEecCC
Confidence 975 899999999999999999999999999987799999999995 5678999999996 443
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=212.82 Aligned_cols=203 Identities=23% Similarity=0.304 Sum_probs=160.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.+++++++...|+. +..+++|+|++|+.|+-+.|+||||||||+||++|+|+.+. .+|++..-.+.- .+.
T Consensus 433 ~i~~e~v~l~tPt~----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~---~~~ 502 (659)
T KOG0060|consen 433 AIEFEEVSLSTPTN----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG---PKD 502 (659)
T ss_pred eEEeeeeeecCCCC----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC---CCc
Confidence 47889999887752 35688999999999999999999999999999999999875 478877543321 256
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc------cccccCHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW------HWRGISGGEKKRL 155 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~------~~~~LSgGerqRv 155 (661)
+-|+||.|.+.-. |.||.+.|...---+ ..+....+++.+.|+.++|.|..++.-|-. ....||+||+||+
T Consensus 503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 8999999987655 999999987432111 111122456788888888888776653311 2257999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
+.||-+.++|++-||||.||++|......+.+.++++ |.|.|-+.|.++ +.+.=|.++-|++
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 9999999999999999999999999988888777664 899999999964 6676688888874
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=210.53 Aligned_cols=191 Identities=21% Similarity=0.297 Sum_probs=134.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|..++++..+. .+.+|++-++++..|.-++|+|+||+||||||++|+. |+|..-..+... +-
T Consensus 81 i~~~~fdLa~G------~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~---~g 142 (582)
T KOG0062|consen 81 IHIDNFDLAYG------GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV---RG 142 (582)
T ss_pred eeeeeeeeeec------chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe---ec
Confidence 45556666554 4789999999999999999999999999999999996 222111111000 01
Q ss_pred EEEecC-CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHH
Q 045930 83 AYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 83 ~yv~Q~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
-+++-. +.+....++.+.+.--..+. ... +.++..+++|..+|.++- ....+ +.+|||-|-|+++|||
T Consensus 143 ~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~~---~l~ei~~~~L~glGFt~emq~~pt-----~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 143 DDTEALQSVLESDTERLDFLAEEKELL--AGL---TLEEIYDKILAGLGFTPEMQLQPT-----KSLSGGWRMRLALARA 212 (582)
T ss_pred cchHHHhhhhhccHHHHHHHHhhhhhh--ccc---hHHHHHHHHHHhCCCCHHHHhccc-----cccCcchhhHHHHHHH
Confidence 122222 12333333333332221111 011 334445558999999754 33334 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
|..+|+||+|||||+.||..+..-+.+.|+... .|+|+++|| +..+-..|..|+.+.+-++
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999988763 799999999 6788889999998877554
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-23 Score=202.74 Aligned_cols=208 Identities=23% Similarity=0.267 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Q 045930 338 KQLSILTQRSSLNMSRDFGYY-WLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSIGG-FPSFIEEM 415 (661)
Q Consensus 338 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~~~-~~~~~~er 415 (661)
+|++.|++|+++..+||+.+. ..+++..++.++++|.+|.+++++.+++ ++.+++++...+..+..... .....+|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998544555 67777666666555444433 36788999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045930 416 RVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPN 495 (661)
Q Consensus 416 ~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~ 495 (661)
..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|++.|++.+ +++.+++.++++..+..++|.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999987 77777788888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhh
Q 045930 496 YLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDL 550 (661)
Q Consensus 496 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef 550 (661)
...+..+.+.+..+++++||.+.+.+.+|++ ++| +.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~-~~~-i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSW-LRW-ISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHH-HHH-HHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999964 888 9999999999999998875
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=178.47 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=156.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-c----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-R---- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~---- 76 (661)
.++..++++.++. ..+++-|+|++++.|.-+.++|.||||||||||+|+|..-- ..|.|.++|... .
T Consensus 13 aievsgl~f~y~~-----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv---~~~~v~VlgrsaFhDt~l 84 (291)
T KOG2355|consen 13 AIEVSGLQFKYKV-----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV---GGGVVQVLGRSAFHDTSL 84 (291)
T ss_pred eEEEeccEEeccc-----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc---cCCeEEEcCcCccccccc
Confidence 3677788888764 34799999999999999999999999999999999997533 248889998752 1
Q ss_pred cccCeEEEEec----------CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccc
Q 045930 77 LDYGGVAYVTQ----------ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 77 ~~~~~i~yv~Q----------~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
.......|.-- +-.+...+++.+.| |+.. +. +. ++-+++++.+.++- + |..+.
T Consensus 85 ~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~-dp---~Rre~LI~iLDIdl-~------WRmHk 147 (291)
T KOG2355|consen 85 ESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GD-DP---ERREKLIDILDIDL-R------WRMHK 147 (291)
T ss_pred cccCceeEecccccccccccccccccccccHHHHH-hhcc-----CC-Ch---hHhhhhhhheeccc-e------EEEee
Confidence 11122333322 22334466765543 4321 11 12 33455666665532 1 22346
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
+|-||||||.|++-|+..=++|+|||-|-.||.-++.++++.|++-.++ |.||+..||-- +-+.....+++.+++|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCee
Confidence 9999999999999999999999999999999999999999999998874 99999999985 568899999999999999
Q ss_pred EEecCCCChhH
Q 045930 226 VYFGEAKSAPT 236 (661)
Q Consensus 226 v~~G~~~~~~~ 236 (661)
+-.-+.++..+
T Consensus 227 ~~~l~~~~i~e 237 (291)
T KOG2355|consen 227 VDNLKYQKIKE 237 (291)
T ss_pred eeccccchhhh
Confidence 87655554444
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=189.49 Aligned_cols=169 Identities=20% Similarity=0.289 Sum_probs=108.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc----------------eeeEE--EECCeecccccCe-EEE
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV----------------MTGNV--LLNGKKRRLDYGG-VAY 84 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~----------------~~G~i--~~~g~~~~~~~~~-i~y 84 (661)
++++.+.+.+| +.+|+|||||||||||++|.-.+.+... ..+.| .+++.......+. +-+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 35667777676 8899999999999999999765422100 01111 1111111111122 224
Q ss_pred EecCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccccccCHHHHHHHHHHHHH-
Q 045930 85 VTQENI-MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIALEI- 161 (661)
Q Consensus 85 v~Q~~~-l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~LSgGerqRvsIa~aL- 161 (661)
++|+.. -+..+++.|.+ ..+.- .+..+.. +.+||||||||+.++.++
T Consensus 93 ~~q~~~~~~~~~~~~e~l-------------------------~~~~~~~~~~~~~-----~~~LS~G~~q~~~i~~~la 142 (213)
T cd03277 93 LPQDRVGEFAKLSPIELL-------------------------VKFREGEQLQELD-----PHHQSGGERSVSTMLYLLS 142 (213)
T ss_pred EchHHHHHHHhCChHhHh-------------------------eeeecCCCccccc-----hhhccccHHHHHHHHHHHH
Confidence 455431 22333333332 11110 1112222 346999999998877554
Q ss_pred ---hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C-CEEEEEecCCchHHHhhcC--eEEEEeCCe
Q 045930 162 ---LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-G-RTIISSIHQPSSEVFALFD--DLFLLSGGE 224 (661)
Q Consensus 162 ---~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g-~tvi~s~Hq~~~~i~~~~D--~v~lL~~G~ 224 (661)
+.+|+++++||||+|||+.++..+++.|++++++ | .++|++||+.. ++.+.+| ++++|.+|+
T Consensus 143 ~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 143 LQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCceEEEEEecCc
Confidence 5899999999999999999999999999999876 6 57999999964 5666666 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-21 Score=191.20 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=110.6
Q ss_pred eeeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH-cCCCCCCceee-EEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 23 LLNGLTGYAEPAR-ILAVMGPSGSGKSTLLDALA-GRLSGNVVMTG-NVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 23 iL~~vs~~i~~Ge-~~aI~GpsGsGKSTLL~~La-G~~~~~~~~~G-~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
-..++|+++.+|+ +++|.|||||||||||++|+ +...+. .| .+-.. ....++|..|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~---~G~~vp~~------~~~~~~~~~~~~~--------- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQ---SGLPIPAA------EGSSLPVFENIFA--------- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHH---cCCCcccc------ccccCcCccEEEE---------
Confidence 3458999999994 89999999999999999998 211110 11 00000 0012333333211
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
.++.++..+..+ ..+|+||||++.|+++ +.+|+++++||||+|||+
T Consensus 78 ----------------------------~lg~~~~l~~~~-----s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 78 ----------------------------DIGDEQSIEQSL-----STFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ----------------------------ecCchhhhhcCc-----chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 111111122222 3499999999999987 589999999999999999
Q ss_pred HHHHHHH-HHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 180 AAAFFVV-KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 180 ~~~~~i~-~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
..+..+. ..++++.+.|.++|++||++ ++.+++|+++.|.+|++++.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 47888887799999999983 688999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-20 Score=195.13 Aligned_cols=187 Identities=26% Similarity=0.369 Sum_probs=142.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|-++|+++-++ ..++++++++|-|.=..-+||+||||.||||||++|.|.+.|+ .|+..-| .+-+|
T Consensus 587 LGlH~VtFgy~-----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKn------hrL~i 652 (807)
T KOG0066|consen 587 LGLHDVTFGYP-----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKN------HRLRI 652 (807)
T ss_pred eecccccccCC-----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhcc------ceeee
Confidence 44556666554 3578999999999999999999999999999999999999884 6654332 33468
Q ss_pred EEEecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 83 AYVTQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 83 ~yv~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
|+..|.. .+-..-|.-|.|.-.. +.+.+ .....|-.+||...++|.- ++.||||||-||++|.-
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F------Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLSGGQKaRValaeL 718 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF------NLPYQ----EARKQLGTFGLASHAHTIK----IKDLSGGQKARVALAEL 718 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc------CCChH----HHHHHhhhhhhhhccceEe----eeecCCcchHHHHHHHH
Confidence 9888863 4556667777765332 22333 3556788899988888852 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
-+..|+||||||||++||..+...+.+.|++. ...||+++||-+ .+.+---.++++.
T Consensus 719 al~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE 775 (807)
T KOG0066|consen 719 ALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVE 775 (807)
T ss_pred hcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEc
Confidence 99999999999999999999999998888876 358999999953 3333333444443
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=197.83 Aligned_cols=173 Identities=28% Similarity=0.445 Sum_probs=129.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-eeeEE-------EECCeecc-----c--ccCeEEEEec----CCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVV-MTGNV-------LLNGKKRR-----L--DYGGVAYVTQ----ENIM 91 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~-~~G~i-------~~~g~~~~-----~--~~~~i~yv~Q----~~~l 91 (661)
.+||++++|+||||-||||-+|+|+|.+.|+.- .++.- .+.|.... . ..-++..-+| -|..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 579999999999999999999999999988621 11100 01111100 0 0011222233 2222
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEe
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLD 171 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLD 171 (661)
+.. ||.|-|.-. +-+.+.+++++.++|++..|+-+. +|||||-||++||.+++++.+++++|
T Consensus 177 ~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 177 VKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred hcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEc
Confidence 333 677665421 112367899999999999999885 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 172 EPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 172 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
||||-||...+....+.+++|++.+++||++.||. ..+--++|-|.++.+
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 99999999999999999999999899999999996 445556888877763
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=174.04 Aligned_cols=74 Identities=27% Similarity=0.308 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 147 ISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 147 LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
||||||||++||++++ .+|+++++|||++|||+..+..+.+.|++++++|.++|+++|++ +....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987789999999996 45678999999963
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=194.04 Aligned_cols=195 Identities=27% Similarity=0.352 Sum_probs=150.9
Q ss_pred EEEEEEEEEeecCCccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 3 LVWEEVTVVVPNFGSGPTR-RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
+.+.++++.+ .++. .++.+++..++.-+-.+++|+||+||||+++++.|-..| ..|.+..++ +.+
T Consensus 363 l~i~~V~f~y-----~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~---~rgi~~~~~------r~r 428 (582)
T KOG0062|consen 363 LRISYVAFEY-----TPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP---TRGIVGRHP------RLR 428 (582)
T ss_pred eEEEeeeccC-----CCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc---ccceeeecc------cce
Confidence 4455555433 3334 689999999999999999999999999999999998776 367665543 356
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
++|-.|...=+-.+.|.+ +.+..+++ | +.+++ .+++-+..+||+. .+...+ .+||||||-||++|..
T Consensus 429 i~~f~Qhhvd~l~~~v~~-vd~~~~~~-p-G~~~e----e~r~hl~~~Gl~g~la~~si-----~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNA-VDFMEKSF-P-GKTEE----EIRRHLGSFGLSGELALQSI-----ASLSGGQKSRVAFAAC 496 (582)
T ss_pred ecchhHhhhhHHHHHhHH-HHHHHHhC-C-CCCHH----HHHHHHHhcCCCchhhhccc-----cccCCcchhHHHHHHH
Confidence 899999754333445543 33433333 2 33444 4667788999964 444444 4699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
...+|.+|+|||||+.||..+-..+.+.|+.. +-.||+++|| .+.+..+|+.+++.++|++.-
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999888876 4589999999 468889999999999999864
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-20 Score=195.87 Aligned_cols=192 Identities=28% Similarity=0.385 Sum_probs=141.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.+.++|+-+..+. ...++..+||+++||-.+.|+||||||||+|.++|+|+.+- ++|.-......+
T Consensus 481 gI~lenIpvItP~-----~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---------y~g~L~~P~~~~ 546 (728)
T KOG0064|consen 481 GIILENIPVITPA-----GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---------YNGLLSIPRPNN 546 (728)
T ss_pred ceEEecCceeccC-----cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---------cCCeeecCCCcc
Confidence 3566777666553 35688999999999999999999999999999999999873 344332223456
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHh---cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc----cccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAH---LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNW----HWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~----~~~~LSgGerqR 154 (661)
+-|+||.|..- .-|.||.+.|.-. ++ .++.++ +..+.+|+.+.|++.+.+-.|-. ...-||||||||
T Consensus 547 mFYIPQRPYms-~gtlRDQIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR 620 (728)
T KOG0064|consen 547 IFYIPQRPYMS-GGTLRDQIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQR 620 (728)
T ss_pred eEeccCCCccC-cCcccceeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHH
Confidence 99999998765 4477887765311 10 012222 34667777777777766655421 124599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
+.+||.+-++|+.-+|||.||+..+.....+.+..++ -|.+.|-++|+|+ +.++-..++
T Consensus 621 ~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~h~~ll 679 (728)
T KOG0064|consen 621 MGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKYHTHLL 679 (728)
T ss_pred HHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHHHHHHH
Confidence 9999999999999999999999988877777766554 3899999999995 555444443
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=178.79 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=107.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.+... ..+++|.+.+++.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----SSFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----CccCcccceEEEeccchhc
Confidence 56788887764 79999999999999999999998542 0112322211 1356777789999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
+.+... ....+. +++.++++.+++ .+|+++++||||+|+|+.
T Consensus 80 l~~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 80 LRDGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred cccccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 976531 112333 557777777763 689999999999999999
Q ss_pred HHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhh--cCeEEEE
Q 045930 181 AAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFAL--FDDLFLL 220 (661)
Q Consensus 181 ~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~--~D~v~lL 220 (661)
.+..+.. .++++.+.|.++|++||++ +.+..+ .+++-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 9988754 7888887799999999997 344433 4444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.6e-19 Score=183.91 Aligned_cols=186 Identities=28% Similarity=0.408 Sum_probs=139.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----CceeeEEEECCeecccccCeEEEEecCC-CCCC
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-----VVMTGNVLLNGKKRRLDYGGVAYVTQEN-IMLG 93 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~i~~~g~~~~~~~~~i~yv~Q~~-~l~~ 93 (661)
.+.+|+|||++++||++++|+|+|||||||||++|.|..... -..+|.|.+--.. ..+.+|-+. .-+.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 357999999999999999999999999999999999975321 1135655543211 234555542 2234
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP 173 (661)
.-|+.|.+.- . +.+ -....++|...||.+..-... ..++||-|||.|+.||.++..+|.+++.||-
T Consensus 469 ~~tilehl~s----~-tGD------~~~AveILnraGlsDAvlyRr---~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 469 EVTILEHLRS----K-TGD------LNAAVEILNRAGLSDAVLYRR---KFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred chhHHHHHhh----c-cCc------hhHHHHHHHhhccchhhhhhc---cHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 5566665531 1 111 123568899999976322221 2357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhh-cCeEEEEeCCeEE
Q 045930 174 TSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFAL-FDDLFLLSGGETV 226 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v 226 (661)
.+.||..++..+.+-|.+++++ |.|++++||.| +.+-++ -|+++++.-|++.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 9999999999999999999986 99999999997 456666 7898888766543
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-19 Score=181.80 Aligned_cols=153 Identities=21% Similarity=0.247 Sum_probs=116.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEE-EEecCCCCCCCCCHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA-YVTQENIMLGTLTVR 98 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 98 (661)
.+.+.+|++++..+|++++|.||||+||||||++++-.. ...++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-------------------LMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-------------------HHHHhCCCcCcccEEEe-----
Confidence 356899999999999999999999999999999998210 001122 4444322111
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI--LTRPQLLFLDEP--- 173 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL--~~~P~lllLDEP--- 173 (661)
.++++++.+|+++.. . +++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 134455666665433 2 46999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 174 TSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|++||..+... ..++.+.+ .|.++|++||+ .++.+++|++..+++|++...+.
T Consensus 122 T~~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 99999988854 33355554 48999999997 47899999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=178.61 Aligned_cols=76 Identities=32% Similarity=0.427 Sum_probs=68.6
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 146 GISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
.|||||+||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|+|. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999987654 9999999999999999999999999999865 789999999973 568999999998
Q ss_pred CCe
Q 045930 222 GGE 224 (661)
Q Consensus 222 ~G~ 224 (661)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-18 Score=190.64 Aligned_cols=128 Identities=27% Similarity=0.423 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCC---CEEEE
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRP---QLLFL 170 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P---~lllL 170 (661)
.|||.|...|.... + .-.+.-+.|.++||.-.. .|. ....|||||.||+-+|.+|..+. .+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888888887532 1 123445677888986432 222 12369999999999999999987 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChhH
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAPT 236 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 236 (661)
||||+||......++++.|.+|.+.|.|||++.|+. ++.+.+|.|+-| .+|++|+.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999996 688999999998 4789999999987654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-18 Score=206.89 Aligned_cols=127 Identities=22% Similarity=0.303 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhC---CCEEE
Q 045930 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTR---PQLLF 169 (661)
Q Consensus 94 ~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~---P~lll 169 (661)
.|||.|.+.|.... .+-.+.-+.|.++||... ..+.. ..|||||.||+-+|.+|..+ +.+++
T Consensus 1660 ~mtv~ea~~~F~~~---------~~i~~~L~~L~~vGLgYl~LGq~~-----~tLSGGE~qRikLa~~l~~~~~~~~lyi 1725 (1809)
T PRK00635 1660 QTPIEEVAETFPFL---------KKIQKPLQALIDNGLGYLPLGQNL-----SSLSLSEKIAIKIAKFLYLPPKHPTLFL 1725 (1809)
T ss_pred cCCHHHHHHHhhcc---------HHHHHHHHHHHHcCCCeeeCCCcC-----CccCchHHHHHHHHHHHhcCCCCCcEEE
Confidence 46788877775321 122345677889999753 22222 36999999999999999976 78999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChhH
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAPT 236 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 236 (661)
|||||+||++.....+++.|++|.+.|.|||++.|++ ++.+.+|.|+-| ++|++|+.|+++++..
T Consensus 1726 lDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1726 LDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 9999999999999999999999999999999999996 577779999999 3689999999887543
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=164.72 Aligned_cols=74 Identities=30% Similarity=0.399 Sum_probs=67.9
Q ss_pred cCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 147 ISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++ ++.+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEEE
Confidence 99999999999999997 7899999999999999999999999999876689999999996 46678999999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=198.45 Aligned_cols=135 Identities=27% Similarity=0.432 Sum_probs=110.7
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhC
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMN------NEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTR 164 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~ 164 (661)
+..+||.|.+.|.-.+.++.... -++..++++ .|+.+||.+. .|+.++ .|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhC
Confidence 34689999999965543221100 123445554 6888999876 788875 5999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 165 P--QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 165 P--~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
| ++++|||||+|||+..+..+.+.|++++++|.|||+++|++. ++ ..+|+|++| .+|++++.|++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 7 999999999999999999999999999888999999999974 55 469999999 99999999987664
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=196.23 Aligned_cols=134 Identities=28% Similarity=0.431 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCC
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNN------EEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRP 165 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P 165 (661)
-.|||.|.+.|...+.+...... ++..+++ +.+..+||... .++.++ +|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~-----tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAG-----TLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcC-----cCCHHHHHHHHHHHHHhhCC
Confidence 36899999998876543211000 1222233 23677888765 577664 59999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 166 --QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 166 --~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
++++|||||+|||+.++..+++.|++++++|.|||+++|++ +.+ ..||++++| ++|++++.|++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 89999999999999999999999999988899999999996 345 589999999 89999999987654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-18 Score=169.52 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=104.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYS 104 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 104 (661)
..++++.+|++++|+|||||||||||++|++.. .+ ..|... ......++|..|. +..+++.++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~---~~g~~~------~~~~~~i~~~dqi---~~~~~~~d~---- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA---QIGCFV------PAESASIPLVDRI---FTRIGAEDS---- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH---HcCCCc------cccccccCCcCEE---EEEecCccc----
Confidence 345566689999999999999999999999542 11 122110 0011223332221 111111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 045930 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184 (661)
Q Consensus 105 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~ 184 (661)
.+..+ ..++++++ |++.+.+++.+|+++++||||+|+|+.....
T Consensus 85 ------------------------------i~~~~-----s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 85 ------------------------------ISDGR-----STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred ------------------------------ccCCc-----eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 11111 23555555 5777788899999999999999999999888
Q ss_pred HHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 185 VVK-ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 185 i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+.. .++.+.+.+.++|++||++ ++.+.+|++..+..|++...++..+
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 765 5677777789999999985 6778899999999999988887543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-18 Score=182.19 Aligned_cols=209 Identities=23% Similarity=0.324 Sum_probs=147.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCCc---eeeEEEECCeec
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVV---MTGNVLLNGKKR 75 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~---~~~~~---~~G~i~~~g~~~ 75 (661)
.+.++|.+.+.. .+.++.|.|++|--|.-++++||||-||||||+-|+.+. +|++. ..-+|..+..+.
T Consensus 264 DIKiEnF~ISA~------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQ------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeecc------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 456677766543 367899999999999999999999999999999999874 44431 223343333321
Q ss_pred -----ccccCeEEEEecCCC-----CCCCCCHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccc
Q 045930 76 -----RLDYGGVAYVTQENI-----MLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144 (661)
Q Consensus 76 -----~~~~~~i~yv~Q~~~-----l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~ 144 (661)
....++...+..++. --...|+.|-+.-.+ .+|- ......+.+..++|.-+|.+.-...+.-
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rPt---- 410 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQERPT---- 410 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCCc----
Confidence 001111222211111 123457776665332 3331 1122234567788999998764433332
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
...|||-|-|||+||||...|-+|.|||||+.||-....-+-+.|+.+. +|.++++||- ..+-..|..|+.|++-+
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQ-gFLD~VCtdIIHLD~qk 486 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQ-GFLDSVCTDIIHLDNQK 486 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEeccc-chHHHHHHHHhhhhhhh
Confidence 3699999999999999999999999999999999999988888998885 5999999995 57889999999999877
Q ss_pred EEE
Q 045930 225 TVY 227 (661)
Q Consensus 225 ~v~ 227 (661)
+-|
T Consensus 487 Lhy 489 (807)
T KOG0066|consen 487 LHY 489 (807)
T ss_pred hhh
Confidence 644
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=162.38 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=62.9
Q ss_pred cccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc-
Q 045930 145 RGISGGEKKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF- 214 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~- 214 (661)
+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+. ..+..++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchhc
Confidence 348999999999999985 7999999999999999999999999998753 345555553 3566777
Q ss_pred --CeEEEEeCCeE
Q 045930 215 --DDLFLLSGGET 225 (661)
Q Consensus 215 --D~v~lL~~G~~ 225 (661)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-16 Score=157.79 Aligned_cols=142 Identities=21% Similarity=0.310 Sum_probs=101.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++.+.+|+++..++|++++|+||||+|||||++++++..- -+++ | .|| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-----la~~---G----------~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-----MAQI---G----------CFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-----HHHc---C----------CCc---chhhcCccChh
Confidence 3579999999999999999999999999999999998631 0100 0 122 23344556666
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
++... ++..+..++.. ..+|+|++|+ +.+.+++++|+++++|||++|+|+
T Consensus 74 ~I~~~------------------------~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 74 RLLSR------------------------LSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred heeEe------------------------cCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 66322 22222222222 3489888865 566778999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 045930 180 AAAFFV-VKILKNIAHDGRTIISSIHQPSSEVFALF 214 (661)
Q Consensus 180 ~~~~~i-~~~L~~la~~g~tvi~s~Hq~~~~i~~~~ 214 (661)
.....+ ...++.+.+.|.++|++||+. ++.+.+
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFR--DIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence 876665 456788887899999999995 344443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=154.06 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=110.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++.+.+|++++.++ ++++|.|||||||||||++|++..- -|+ .|.........++++.| +++.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~-----l~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL-----LAQ---IGSFVPASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH-----Hhc---cCCeeccccceecceee---EeccCCchh
Confidence 34689999999887 9999999999999999999987531 111 12122112345677754 566777777
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC--HHHHHHHHHHHHHhhCCCEEEEeCC---C
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS--GGEKKRLSIALEILTRPQLLFLDEP---T 174 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--gGerqRvsIa~aL~~~P~lllLDEP---t 174 (661)
++..+ .| ..|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 66432 11 1233444444445679999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 175 SGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 175 sGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
+++|.... ....++.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..++..
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88887552 23455556665 89999999994 688899998888889988777665543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=152.61 Aligned_cols=178 Identities=23% Similarity=0.359 Sum_probs=137.5
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCC
Q 045930 20 TRRLLNGLTGYAEPA-----RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGT 94 (661)
Q Consensus 20 ~~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~ 94 (661)
.+.-+-+..+.|+.| |++..+|.||-|||||+++++|+++++ ..|+|- .-.++|=||.-.-=.+
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p---------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIP---------VLNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCccc---------ccceeccccccCcccc
Confidence 445667777777776 578999999999999999999999875 233332 1247788886544445
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPt 174 (661)
-|||+.+.--.+- .-...+.+.++++-|.+++..|.-+. +|||||.|||++|..|-..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqevq-----~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEVQ-----GLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHhh-----cCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 6899887532210 11123568889999999998888774 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 175 SGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 175 sGLD~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
+-||+..+...-+.+++.- +.++|-.++.||- ...--++||+++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEEe
Confidence 9999999999988888864 4578999999994 23445789987654
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-14 Score=146.54 Aligned_cols=137 Identities=26% Similarity=0.296 Sum_probs=92.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------DYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
.-++|+||||||||||+++|+|.++++ +|+|.++|++... ..+.+++++|.+. .+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch------
Confidence 578999999999999999999999874 8999999987531 1233567777542 23444443311
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~ 188 (661)
+. .| ........+|+++++|||++ ...+...
T Consensus 182 ------k~--------------------------------~~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 182 ------KA--------------------------------EG-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ------HH--------------------------------HH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 00 01 12223336999999999974 2334444
Q ss_pred HHHHHhcCCEEEEEecCCchH-H-----------HhhcCeEEEEeCCeEEEecCCCC
Q 045930 189 LKNIAHDGRTIISSIHQPSSE-V-----------FALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 189 L~~la~~g~tvi~s~Hq~~~~-i-----------~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
++.+ ++|.+||+++|++..+ + ..+|||+++|++|+ ..|.+++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 5554 4699999999986432 2 26799999999887 5555543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-15 Score=144.76 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=58.1
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV-KILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~-~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 48887776433333 34599999999999999999888775 556777774 89999999996 578888864444444
Q ss_pred eEEE
Q 045930 224 ETVY 227 (661)
Q Consensus 224 ~~v~ 227 (661)
+...
T Consensus 138 ~~~~ 141 (185)
T smart00534 138 HMSA 141 (185)
T ss_pred EEEE
Confidence 4433
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-14 Score=142.90 Aligned_cols=88 Identities=30% Similarity=0.451 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 045930 120 DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195 (661)
Q Consensus 120 ~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~ 195 (661)
+.+.+.+...++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 445666666666542 49999999999997664 46899999999999999999999999999875
Q ss_pred CCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 196 GRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 196 g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
+.-+|++||++ ..++.+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999995 6899999998774
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=137.76 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=65.3
Q ss_pred cccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc-
Q 045930 145 RGISGGEKKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF- 214 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~- 214 (661)
..+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence 468999999999999886 799999999999999999999999988764 458889999863 455553
Q ss_pred -CeEEEEeCCeE
Q 045930 215 -DDLFLLSGGET 225 (661)
Q Consensus 215 -D~v~lL~~G~~ 225 (661)
++++.+.+|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 47899999986
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.1e-13 Score=133.05 Aligned_cols=129 Identities=23% Similarity=0.257 Sum_probs=87.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCceeeEEEECCeecccccCeEEEEecCCCCC-CCCCHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR--LSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML-GTLTVR 98 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~-~~lTV~ 98 (661)
.+=+|+++.=..+..++|.||||+||||||+.++.. +. ..|..... ..-.++|..|....+ ...++.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la----~~G~~v~a------~~~~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA----HIGSFVPA------DSATIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH----hCCCeeEc------CCcEEeeeeeeeeeeCCccChh
Confidence 344555553222389999999999999999999842 21 13443321 123467777753211 111111
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS--GGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--gGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
+ ++| .-|.||++++++++.+|+++++|||++|
T Consensus 87 ~----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~g 120 (213)
T cd03281 87 S----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKG 120 (213)
T ss_pred h----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 1 122 3567999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhc---CCEEEEEecCC
Q 045930 177 LDSAAAFFV-VKILKNIAHD---GRTIISSIHQP 206 (661)
Q Consensus 177 LD~~~~~~i-~~~L~~la~~---g~tvi~s~Hq~ 206 (661)
+|+.....+ ...++++.+. +.++|++||++
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 999865555 5688888764 35899999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-13 Score=155.93 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=89.9
Q ss_pred eEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCC-CCCCCCHHHHHHH
Q 045930 27 LTGYAEPA-RILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI-MLGTLTVRETIAY 103 (661)
Q Consensus 27 vs~~i~~G-e~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~-l~~~lTV~E~l~~ 103 (661)
+|+.+.+| ++++|.||||+||||||++|+|.. .+ ..| .+||.... .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G----------------~~Vpa~~~~~~~---~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSG----------------IPIPANEHSEIP---YFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhC----------------CCccCCcccccc---chhhee-
Confidence 78888887 999999999999999999999872 21 122 12333211 111 111110
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 104 SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
.. ...+ +.+. . ....+|+|+++++.|++.+ .+|+++++|||++|+|+....
T Consensus 371 -~~------i~~~---~si~-------------~-----~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 -AD------IGDE---QSIE-------------Q-----NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred -ee------cChH---hHHh-------------h-----hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00 0000 0000 0 1235999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHhcCCEEEEEecCC
Q 045930 184 FV-VKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 184 ~i-~~~L~~la~~g~tvi~s~Hq~ 206 (661)
.+ ..+|+.+.+.|.++|++||+.
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~ 445 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChH
Confidence 98 578888888899999999995
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-12 Score=115.77 Aligned_cols=72 Identities=19% Similarity=0.101 Sum_probs=58.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----cccCeEEEEecCCCCCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~~l~~~l 95 (661)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.+.. ...+.++|++|+ ++ .-
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 46899999999999999999999999999999986 577889987642 123456777776 44 34
Q ss_pred CHHHHHHHH
Q 045930 96 TVRETIAYS 104 (661)
Q Consensus 96 TV~E~l~~~ 104 (661)
|++|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 899999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=117.45 Aligned_cols=225 Identities=17% Similarity=0.103 Sum_probs=153.1
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CCC--hHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-H
Q 045930 346 RSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDV-GTN--YTAIY----ARGSCAAFISGFMTFMSIGGFPSFIEEMR-V 417 (661)
Q Consensus 346 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~-~~~--~~~i~----~r~~~~~f~~~~~~~~s~~~~~~~~~er~-v 417 (661)
|+++...|||..+..-+++-+++.+++|.+|-+. +.+ ..+.. --.|.+.+........ .+.. ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhH-HHHHHHhC
Confidence 6778889999988888888888888888887542 111 11111 1112222111111111 1121 222332 2
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 045930 418 FSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYL 497 (661)
Q Consensus 418 f~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~ 497 (661)
+.++....=-+...|+++|.+.+++..++..+++..+.|++.+++.. .++.+++..++...+..++|.++++.+++..
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS--GVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 33333333447889999999999999999999999999888776543 3444444455556677899999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHHHHHhhhCC
Q 045930 498 TGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGM 577 (661)
Q Consensus 498 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~ 577 (661)
.+..+.+.+..+++++||.+.|.+.+|++ ++| +.|++|.+|+.|++-.. ..|.
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~-~~~-i~~~~P~~~~~~~~r~~-~~~~------------------------ 208 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAW-MQG-LAKINPLTYAVDGARYY-LAGV------------------------ 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHH-HHH-HHHHCcHHHHHHHHHHH-HhCC------------------------
Confidence 88888888888899999999999999985 888 99999999999985432 2110
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q 045930 578 NLDRSKWWDLAVVVAILISYRVIFF 602 (661)
Q Consensus 578 ~~~~~~w~~~~il~~~~~~~~~l~~ 602 (661)
..-.+.|.++++++++.+++.+++.
T Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 209 SPTFPLEQDLLVLTLLAVIFVGIAA 233 (236)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHH
Confidence 0001256788888888887776654
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-12 Score=137.94 Aligned_cols=172 Identities=27% Similarity=0.359 Sum_probs=122.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--eeeEEEEC------Ceeccccc--------C---eEEEEecCCCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVV--MTGNVLLN------GKKRRLDY--------G---GVAYVTQENIML 92 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~--~~G~i~~~------g~~~~~~~--------~---~i~yv~Q~~~l~ 92 (661)
+||++.+++|.||-||||-|++++|..+|+.. ..+-.+-+ |....... + .--||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999987520 11111100 10000000 0 001111111111
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
..+|.+++. ..+.++..+++++.+.|.+..|+-+. .|||||-||.+||++-+.+.++.++||
T Consensus 178 -k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 178 -KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred -HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence 113333332 12223356788888999988888775 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
|.+-||...+..-...++.+....+=||++.||. +.+.-+.|-+..|.+
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 9999999999999999999998889999999996 456667888888864
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=124.97 Aligned_cols=138 Identities=19% Similarity=0.219 Sum_probs=91.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-LSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
+.+.+|+++.+++|++++|+||||+||||+|+++++. ..+ ..|...... . -.++|..|- +..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a~-~-----~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPAS-S-----ATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEcC-c-----eEEeccceE---EEEecCcc
Confidence 5689999999999999999999999999999999994 333 245433221 1 113332221 11100111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS--GGEKKRLSIALEILTRPQLLFLDEPTSGL 177 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--gGerqRvsIa~aL~~~P~lllLDEPtsGL 177 (661)
.+. .++| ..|-+|++-...-+++|+++|+|||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0122 24555666666667789999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhc-CCEEEEEecCCchHHHhhc
Q 045930 178 DSAAAFFV-VKILKNIAHD-GRTIISSIHQPSSEVFALF 214 (661)
Q Consensus 178 D~~~~~~i-~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~ 214 (661)
|+.....+ ...++.+.+. +.++|++||++ ++.++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 98777775 5677888776 89999999996 344444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.4e-12 Score=143.13 Aligned_cols=77 Identities=26% Similarity=0.382 Sum_probs=70.2
Q ss_pred cccCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 145 RGISGGEKKRLSIALEILTR----PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~----P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||+| .+...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~--~~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLP--QVAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999985 89999999997 355789999999
Q ss_pred eCCe
Q 045930 221 SGGE 224 (661)
Q Consensus 221 ~~G~ 224 (661)
.+|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-12 Score=148.40 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=64.1
Q ss_pred cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
..+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+.|.++|++||++ ......+|+..+. ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-EE
Confidence 35999999999999988 8999999999999999999988864 6777877799999999995 3333345544443 45
Q ss_pred eEEEe
Q 045930 224 ETVYF 228 (661)
Q Consensus 224 ~~v~~ 228 (661)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
|
|
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=116.34 Aligned_cols=150 Identities=13% Similarity=0.065 Sum_probs=119.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045930 428 GVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGIIIGAGYL 507 (661)
Q Consensus 428 ~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p~~~~a~~~~~~~~ 507 (661)
+.+.++++|.+..++..++.+++...+.|++.|++++ +++.+++.+++...+..+++.++++++++...+ ++...+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 5567899999999999999999999999999999875 566677777777788889999999999876443 334445
Q ss_pred HHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHHHHHhhhCCCCCchhHHHH
Q 045930 508 GIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWWDL 587 (661)
Q Consensus 508 ~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~ 587 (661)
.+.++++|.+.|.+.+|++ ++| +.|++|.+|+.+++-.+.+.| . ..+.|.++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~-~~~-i~~~~P~t~~~~~~r~~~~~~-------------------------~-~~~~~~~~ 185 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAF-FQA-IHPFLPMTYSVNGLRQLISGG-------------------------N-DGTLWQAV 185 (208)
T ss_pred HHHHccCCCccchhhCHHH-HHH-hhhhCcHHHHHHHHHHHHhCC-------------------------c-HHHHHHHH
Confidence 5666788988999999985 898 999999999999986554321 0 12368889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 045930 588 AVVVAILISYRVIFFAILKFRE 609 (661)
Q Consensus 588 ~il~~~~~~~~~l~~~~L~~~~ 609 (661)
++++++.+++.+++....|.++
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999989888887666543
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.5e-12 Score=125.12 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPT-----SGLDSAAAFFVVKILKNIAH 194 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPt-----sGLD~~~~~~i~~~L~~la~ 194 (661)
-|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-11 Score=120.97 Aligned_cols=152 Identities=21% Similarity=0.218 Sum_probs=94.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHh
Q 045930 28 TGYAEPARILAVMGPSGSGKSTL-LDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAH 106 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTL-L~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 106 (661)
.+-+++|++++|.|+|||||||| ++.+++..+. | ..+.|+..+ .|..+.+.....
T Consensus 18 ~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----g-------------~~~~yi~~e------~~~~~~~~~~~~ 73 (230)
T PRK08533 18 GGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-----G-------------YSVSYVSTQ------LTTTEFIKQMMS 73 (230)
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----C-------------CcEEEEeCC------CCHHHHHHHHHH
Confidence 34589999999999999999999 7888886542 1 124555532 355666655443
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----C
Q 045930 107 LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGL----D 178 (661)
Q Consensus 107 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGL----D 178 (661)
+.. . +++.... |.-...+.. ..+|+++.++..+.+.+- .+|+++++||||+++ |
T Consensus 74 ~g~----~-------~~~~~~~-~~l~~~~~~------~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d 135 (230)
T PRK08533 74 LGY----D-------INKKLIS-GKLLYIPVY------PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS 135 (230)
T ss_pred hCC----c-------hHHHhhc-CcEEEEEec------ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc
Confidence 321 1 1111111 100011111 125666655544433332 369999999999999 8
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCch------HHHhhcCeEEEEe
Q 045930 179 SAAAFFVVKILKNIAHDGRTIISSIHQPSS------EVFALFDDLFLLS 221 (661)
Q Consensus 179 ~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~------~i~~~~D~v~lL~ 221 (661)
+.....+.+.++.+++.|.|+++++|+... .+..++|-|+.|+
T Consensus 136 ~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 136 EVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 888888999999998888888776664310 1234567777776
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=139.05 Aligned_cols=77 Identities=26% Similarity=0.459 Sum_probs=69.9
Q ss_pred cccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 145 RGISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+| .+..++|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 69999999998 366899999999
Q ss_pred eCCe
Q 045930 221 SGGE 224 (661)
Q Consensus 221 ~~G~ 224 (661)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8653
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-11 Score=147.98 Aligned_cols=79 Identities=23% Similarity=0.216 Sum_probs=73.1
Q ss_pred ccccCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 045930 144 WRGISGGEKKRLSIALEILT----------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~----------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~ 213 (661)
++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++...|++|+++||++ .....+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~~~ 1026 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRERI 1026 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHhh
Confidence 46799999999999999986 7999999999999999999999999999988899999999997 578889
Q ss_pred cCeEEEEeCC
Q 045930 214 FDDLFLLSGG 223 (661)
Q Consensus 214 ~D~v~lL~~G 223 (661)
+|+|.|++.|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999743
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=126.05 Aligned_cols=171 Identities=23% Similarity=0.297 Sum_probs=111.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec---c----------cccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR---R----------LDYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~---~----------~~~~~i~yv~Q 87 (661)
.++++++ +.+.+|+.++|+|+||+|||||+++|+|..++. .|.|.+.|+.. . ..++.+.++.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4689999 999999999999999999999999999998774 68888865432 1 11356888876
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH-HHHhhCCC
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA-LEILTRPQ 166 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa-~aL~~~P~ 166 (661)
.+.-. -.+....+.+ -.+.+.+.+-|- |.++= ...++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChH-----HHHHHHHHHH----
Confidence 44211 0111111111 011222222231 11110 00111 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--cCC-----EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 167 LLFLDEP--TSGLDSAAAFFVVKILKNIAH--DGR-----TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 167 lllLDEP--tsGLD~~~~~~i~~~L~~la~--~g~-----tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+.+.|| |+|+|+.....+.+.++++.+ +|. ||++.+||.. + .+||++..+.+|+++.+++..
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHH
Confidence 123564 789999999999999999984 575 9999999975 3 789999999999999999854
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-11 Score=121.01 Aligned_cols=63 Identities=27% Similarity=0.474 Sum_probs=54.4
Q ss_pred cccCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 145 RGISGGEKKRLSIALEILTRP---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~~~P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-||+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999998877 899999999999999999999999888777889999999973
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-11 Score=120.72 Aligned_cols=133 Identities=23% Similarity=0.219 Sum_probs=89.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+-+|+++..++|++++|.||||+||||+++++++..--. ..|- ........++++ |.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G~------~vpa~~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMGM------DVPAKSMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcCC------ccCccccEeccc---cEEEEecCcccc
Confidence 56889999999999999999999999999999999863100 0111 110001111111 122222222222
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS--GGEKKRLSIALEILTRPQLLFLDEPTSGLD 178 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS--gGerqRvsIa~aL~~~P~lllLDEPtsGLD 178 (661)
+.. ++| ..|-+|++-....+++|+++++|||.+|+|
T Consensus 86 ~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 86 IMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred ccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 210 111 135566665666667899999999999999
Q ss_pred HHHHHHHHHH-HHHHHhc-CCEEEEEecCC
Q 045930 179 SAAAFFVVKI-LKNIAHD-GRTIISSIHQP 206 (661)
Q Consensus 179 ~~~~~~i~~~-L~~la~~-g~tvi~s~Hq~ 206 (661)
+.....+... ++.+.+. +.++|++||++
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 9999998887 7888876 89999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=139.37 Aligned_cols=78 Identities=26% Similarity=0.376 Sum_probs=69.2
Q ss_pred ccccCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh
Q 045930 144 WRGISGGEKKRLSIALEIL----------TRPQLLFLDEPT-SGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA 212 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~----------~~P~lllLDEPt-sGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~ 212 (661)
...||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ +|.|||++||++ ....
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hchh
Confidence 4679999999999999887 599999999998 789999999999999998 589999999996 4567
Q ss_pred hcCeEEEEeC-CeE
Q 045930 213 LFDDLFLLSG-GET 225 (661)
Q Consensus 213 ~~D~v~lL~~-G~~ 225 (661)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999985 553
|
|
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-09 Score=109.59 Aligned_cols=232 Identities=13% Similarity=0.073 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Q 045930 340 LSILTQRSSLNMSRD-FGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTFMSI-GGFPSFIEEMRV 417 (661)
Q Consensus 340 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~r~~~~~f~~~~~~~~s~-~~~~~~~~er~v 417 (661)
...+++|+++..+|+ |.....-+++-++.-+++|..|-....+..+. + ..-|.+-+.+.+..+ +++- -.--.+
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~--y~~f~~pg~l~~~~~~~~~~--~~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-S--YAAFLAAGMVATSAMTASTF--ETIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-C--HHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 456779999999999 99888888888888888888875431111111 1 111222222222111 0100 000123
Q ss_pred HHHHhcCCCC--------cHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 418 FSRERLNGHY--------GVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMI 489 (661)
Q Consensus 418 f~rE~~~g~Y--------~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i 489 (661)
+.|||.+|.+ ++..+.+|+.+.+.-..++..++...+.+ ..|..+. ...+.....+++...+..++|+++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444442 78899999999887766666665554443 3344443 334444444455556667899999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHH
Q 045930 490 ASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDV 569 (661)
Q Consensus 490 ~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~ 569 (661)
+++.++.+....+...++.+++..||.+.+.+.+|++ +++ +.+++|+.|+.|++-.. +.|
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~-lq~-i~~~nPlt~~v~~~R~~-~~g----------------- 219 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDV-IQG-MTHFLPLAHSIDDIRPV-MLG----------------- 219 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHH-HHH-HHHHCcHHHHHHHHHHH-HhC-----------------
Confidence 9999999988888888899999999999999999985 787 99999999999985322 211
Q ss_pred HHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 570 ILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILK 606 (661)
Q Consensus 570 ~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~ 606 (661)
-+ ..+.|.++++++++.+++..++....|
T Consensus 220 -------~~-~~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 220 -------GP-GTQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred -------CC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 112456778888888877777665443
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-11 Score=122.40 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred cccCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 045930 145 RGISGGE--------KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF-VVKILKNIAHDGRTIISSIHQPSSEVFALFD 215 (661)
Q Consensus 145 ~~LSgGe--------rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~-i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D 215 (661)
+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+. .....+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHH--hhCCCCC
Confidence 4589999 9999999999999999999 999999655443 54 555554678999999995 3567899
Q ss_pred eEEEEeCCeE
Q 045930 216 DLFLLSGGET 225 (661)
Q Consensus 216 ~v~lL~~G~~ 225 (661)
.|.+|+.|+.
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999986
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=111.97 Aligned_cols=145 Identities=21% Similarity=0.164 Sum_probs=97.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHH
Q 045930 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNE 116 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~ 116 (661)
+.|.||+|+|||||.--++-..-. +| ..+.|+.=+ .|..+.+.....+. ...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g-------~~v~~~s~e------~~~~~~~~~~~~~g----~~~~ 54 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RG-------EPGLYVTLE------ESPEELIENAESLG----WDLE 54 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CC-------CcEEEEECC------CCHHHHHHHHHHcC----CChH
Confidence 679999999999998655432110 11 124454322 24555554443331 1111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccccccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHH
Q 045930 117 EITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK------RLSIALEILTRPQLLFLDEPTSGLD---SAAAFFVVK 187 (661)
Q Consensus 117 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq------RvsIa~aL~~~P~lllLDEPtsGLD---~~~~~~i~~ 187 (661)
+ +...|+....|... ..+|+||+| +.........+|+++++|||++.+| ......+.+
T Consensus 55 -------~-l~~~g~l~~~d~~~-----~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 55 -------R-LEDEGLLAIVDADP-----DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred -------H-HHhcCCeEEEecCc-----cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 1 22334444444433 358999998 4555555667999999999999999 888888889
Q ss_pred HHHHHHhcCCEEEEEecCCch--------HHHhhcCeEEEEe
Q 045930 188 ILKNIAHDGRTIISSIHQPSS--------EVFALFDDLFLLS 221 (661)
Q Consensus 188 ~L~~la~~g~tvi~s~Hq~~~--------~i~~~~D~v~lL~ 221 (661)
.++.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999998889999999998643 2678899999887
|
A related protein is found in archaea. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=131.02 Aligned_cols=137 Identities=24% Similarity=0.420 Sum_probs=105.2
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH------HHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhC
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA------ITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTR 164 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~ 164 (661)
+..|++.|.+.|...+.+.. ....-.+..+.++ |..+||.-. .++..+ .|||||.||+-+|..|-++
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~-----TLSGGEaQRIRLAtqiGS~ 499 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAG-----TLSGGEAQRIRLATQIGSG 499 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCC-----CcChhHHHHHHHHHHhccc
Confidence 34678889988887765321 1111112222222 344677643 455444 5999999999999999887
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChhH
Q 045930 165 --PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAPT 236 (661)
Q Consensus 165 --P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~~ 236 (661)
-=+++||||+-||-+....++++.|++|.+.|-|+|++.||+ +....+|+|+-+ .+|+|++.|++++++.
T Consensus 500 LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 500 LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 346799999999999999999999999999999999999995 688899999998 4799999999987654
|
|
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-09 Score=106.69 Aligned_cols=219 Identities=11% Similarity=-0.019 Sum_probs=135.3
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHhcCCCCc
Q 045930 352 SRDFGYYWLRIAIYIILSVCVGSIFYDVGTNYTAIYA-RGSCAAFISGFMTFMSIGGFPSFIEEMR--VFSRERLNGHYG 428 (661)
Q Consensus 352 ~Rd~~~~~~r~~~~~~~~l~~G~lf~~~~~~~~~i~~-r~~~~~f~~~~~~~~s~~~~~~~~~er~--vf~rE~~~g~Y~ 428 (661)
+|||.....-+.+.+++-++.+.+|-+-. +.+..+. -.+.+.+...+ +..+..--...+||. .+.|=+.... +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAIS--TAFTGQAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCHHHHHhcCCC-c
Confidence 68999888888888888777777776521 1111111 11111111111 111111112333433 3444443333 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 045930 429 VAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVP---NYLTGIIIGAG 505 (661)
Q Consensus 429 ~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~~~~p---~~~~a~~~~~~ 505 (661)
+..|+++|.+..++..++..+++. +++++.|++.....+ ..++.+......+.+++.+++++++ +.+.+..++..
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888777655554 556778988654332 2233333333444566666777664 44444677778
Q ss_pred HHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHHHHHhhhCCCCCchhHH
Q 045930 506 YLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTMLGMNLDRSKWW 585 (661)
Q Consensus 506 ~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~ 585 (661)
+..+++++||.+.|.+.+|+| ++| +++++|++|+.+++-.- +.| +-+ ....|.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~-lq~-i~~~~P~t~~~~~~r~~-~~~-----------------------~~~-~~~~~~ 208 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTW-IKW-FVRVQPSSYATEALRQA-ATV-----------------------SVD-TFGAVR 208 (232)
T ss_pred HHHHHHHHhheeeecccccHH-HHH-HHHhCcHHHHHHHHHHH-HcC-----------------------CCC-hhhHHH
Confidence 888899999999999999985 899 99999999999976432 211 001 113577
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045930 586 DLAVVVAILISYRVIFFA 603 (661)
Q Consensus 586 ~~~il~~~~~~~~~l~~~ 603 (661)
++++++++.+++..++..
T Consensus 209 ~~~~l~~~~~v~~~la~~ 226 (232)
T TIGR00025 209 DLVVVLAFWVALAALAAI 226 (232)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777666654
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-11 Score=118.30 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=64.2
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEP--TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEP--tsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
.+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 5999999999999999999999999995 43444 445677777766799999999983 577889999999999
Q ss_pred eEEEe
Q 045930 224 ETVYF 228 (661)
Q Consensus 224 ~~v~~ 228 (661)
++++.
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 98665
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=104.15 Aligned_cols=67 Identities=25% Similarity=0.415 Sum_probs=54.9
Q ss_pred ccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 139 vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
+|.......|.||-=---+.+. ..+.-+++||||-++|.+.-+..+...|+++++.|.-+|+.||.|
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSP 188 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP 188 (233)
T ss_pred cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence 3333345689999654444443 456789999999999999999999999999999999999999998
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-08 Score=104.00 Aligned_cols=202 Identities=10% Similarity=0.067 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC-CC-------ChHHH--HHHHHHHHHHHHHHHHHHHhH
Q 045930 338 KQLSILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDV-GT-------NYTAI--YARGSCAAFISGFMTFMSIGG 407 (661)
Q Consensus 338 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~-~~-------~~~~i--~~r~~~~~f~~~~~~~~s~~~ 407 (661)
+++..+++|.++...|||..+..-+++-+++-+++|.+|-.+ +. +..+. +--.|++.+...+..+. ++
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~~ 79 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--SS 79 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--hh
Confidence 678999999999999999999999999999999999988542 11 10011 11112222211111111 11
Q ss_pred HHHHHHHH--HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 045930 408 FPSFIEEM--RVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESC 485 (661)
Q Consensus 408 ~~~~~~er--~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~ 485 (661)
. ....|| ..+.+=+... .+...+.+++++..+-..++..++...+.+ ..|.+.+...++.....+++...+..++
T Consensus 80 ~-~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~-~~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 80 L-SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAA-LVGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred h-HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 122222 2333333333 378889999999998777776655544443 2366655444443344444455667789
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCC---cccccccccccccHHHHHHHHHH
Q 045930 486 MMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDI---PKVFWRYPIAYINYGAWALQGAY 546 (661)
Q Consensus 486 ~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~w~w~i~yis~~~ya~e~l~ 546 (661)
|+++++++++......+.+.++.+++..||.+.+.+.+ |++ ++| +.++||+.|..|++=
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~-l~~-i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTW-LYW-ICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHH-HHH-HHHhCcHHHHHHHHH
Confidence 99999999998877777778888888999999888666 653 677 999999999998763
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-10 Score=141.12 Aligned_cols=78 Identities=28% Similarity=0.244 Sum_probs=69.1
Q ss_pred ccccCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 045930 144 WRGISGGEKKRLSIALEILT--------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFD 215 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~--------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D 215 (661)
++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++.|+||+++||.+ .....+-.
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~~ 1025 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIPV 1025 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhccc
Confidence 45799999999999999996 8999999999999999999999999999998899999999984 34556667
Q ss_pred eEEEEeC
Q 045930 216 DLFLLSG 222 (661)
Q Consensus 216 ~v~lL~~ 222 (661)
+|.|-+.
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 7777754
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-10 Score=134.79 Aligned_cols=76 Identities=29% Similarity=0.323 Sum_probs=67.9
Q ss_pred ccccCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 144 WRGISGGEKKR------LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 144 ~~~LSgGerqR------vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.+||++||++ ++...||++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~~ 863 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADYV 863 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCeE
Confidence 46799999994 5556678899999999999999999999999999999887788999999996 477899999
Q ss_pred EEEe
Q 045930 218 FLLS 221 (661)
Q Consensus 218 ~lL~ 221 (661)
++|.
T Consensus 864 ~~l~ 867 (880)
T PRK03918 864 IRVS 867 (880)
T ss_pred EEEE
Confidence 9997
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.8e-10 Score=117.62 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=92.6
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-ccc-cCeEEEEecCCC-CCCCCCHHHHHHH
Q 045930 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RLD-YGGVAYVTQENI-MLGTLTVRETIAY 103 (661)
Q Consensus 27 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~~-~~~i~yv~Q~~~-l~~~lTV~E~l~~ 103 (661)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.+.+..... ... ...+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCCCcC----------
Confidence 45678899999999999999999999999998763 45556543211 110 111222111100 000
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 104 SAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 104 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
+++- .-.+..+|-.+|+++++|||.+ .
T Consensus 204 ------------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 204 ------------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred ------------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0111 1134456777999999999996 3
Q ss_pred HHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 184 FVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 184 ~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
++.+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 456667776643456799999974 66679999999998888777665443
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-09 Score=123.70 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=64.4
Q ss_pred HhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH---------hhcCeEEEEeCCeEEEecC
Q 045930 161 ILTRPQLLFLDEPTSGL-DSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVF---------ALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 161 L~~~P~lllLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~---------~~~D~v~lL~~G~~v~~G~ 230 (661)
+..+|+++++|||+.+| |+..+..+.+.++++.+.|.+++++||+|. ++. +.||..++|.+|++...|.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 799999999999999888999999999985 443 6899999999998766553
Q ss_pred CCChhHHHHhcCC
Q 045930 231 AKSAPTFFAEAGF 243 (661)
Q Consensus 231 ~~~~~~~f~~~g~ 243 (661)
.++++..|+
T Consensus 728 ----~~~~~~~gl 736 (818)
T PRK13830 728 ----REFYERIGF 736 (818)
T ss_pred ----HHHHHHcCC
Confidence 344555553
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=99.91 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTS----------GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPts----------GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~ 209 (661)
.+.++.++...+.+...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666677888889999999999999994 5555556666666656555699999999997543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-09 Score=108.15 Aligned_cols=136 Identities=33% Similarity=0.490 Sum_probs=90.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC-eecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG-KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g-~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
|++..|+||+|+|||||.-.++--.. .|.-...+ ... .....+-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~-~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV-TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc-CCCceEEEEECCC-----------------------
Confidence 67889999999999999887764322 23222221 111 1123466655432
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL----------------EILTRPQLLFLDEPTS- 175 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~----------------aL~~~P~lllLDEPts- 175 (661)
+.++..+++..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 23445566777777777665555443 2345555555443 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCc
Q 045930 176 -----GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPS 207 (661)
Q Consensus 176 -----GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~ 207 (661)
.+|+.....+++.|++++++ |.+||++.|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999875 999999999863
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.6e-07 Score=93.20 Aligned_cols=240 Identities=15% Similarity=0.190 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHH----HHh-HHH
Q 045930 337 WKQLSILTQRSSLNMSRDFGY-YWLRIAIYIILSVCVGSIFYD-VGTNYTAIYARGSCAAFISGFMTFM----SIG-GFP 409 (661)
Q Consensus 337 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~lf~~-~~~~~~~i~~r~~~~~f~~~~~~~~----s~~-~~~ 409 (661)
++-++.+.+|+.+...||+.. ...-+++.++..+++|.++-. .+.. .++ + -..|++.+...+. ++. +..
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~-~--y~~fl~pGll~~~~~~~~~~~~~~ 82 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGF-S--YMQFIVPGLIMMSVITNSYSNVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCC-c--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999854 333344555566666665532 1110 111 0 1122222222111 111 112
Q ss_pred HHHHHHHH-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 410 SFIEEMRV-FSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMM 488 (661)
Q Consensus 410 ~~~~er~v-f~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~ 488 (661)
.+.+++.. ..++-..---+...+.+++++...-..++..++...+.+...|.++. ....+...+++...+....+++
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 23333311 01111222347888999999987766565555554444444466543 2222222222222323345788
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHH
Q 045930 489 IASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGD 568 (661)
Q Consensus 489 i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~ 568 (661)
++.+.++..-...+.+.++.+++..||.+.+.+++|++ ++| +.++||+.|..|++=.. +.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~-l~~-i~~~nPlt~~v~~~R~~-~~----------------- 220 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPF-WQG-VSKLNPIVYMVNAFRYG-FL----------------- 220 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHH-HHH-HHHHCcHHHHHHHHHHH-Hc-----------------
Confidence 88888888777778888888999999999999999984 677 99999999999977321 11
Q ss_pred HHHHhhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 569 VILKTMLGMNLDRSKWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 569 ~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
|.+ +.+.|.++++++++.+++..++....|.+++
T Consensus 221 -------g~~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 221 -------GIS-DVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred -------CCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111 1235778889999888888888776655544
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-09 Score=126.81 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=66.1
Q ss_pred ccccCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hc-C-CEEEEEecCCchHHHhhc
Q 045930 144 WRGISGGEKKRLSI------ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HD-G-RTIISSIHQPSSEVFALF 214 (661)
Q Consensus 144 ~~~LSgGerqRvsI------a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la-~~-g-~tvi~s~Hq~~~~i~~~~ 214 (661)
+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .+||++||++ +....|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHhc
Confidence 46799999999975 589999999999999999999999999999998654 33 3 4899999996 356899
Q ss_pred CeEEEEe
Q 045930 215 DDLFLLS 221 (661)
Q Consensus 215 D~v~lL~ 221 (661)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-09 Score=115.71 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=107.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.|.+.|+. ..+|+|.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer-------------------g~ev~e~ 200 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER-------------------GREVKDF 200 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC-------------------cccHHHH
Confidence 3577875 999999999999999999999999999988763 5655554432 1366666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh-------hCCCEEEEeCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL-------TRPQLLFLDEP 173 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~-------~~P~lllLDEP 173 (661)
+.... ..-|+.+. ..+ ....+-|.|+|+|+..+.+.+ .++-++++|||
T Consensus 201 ~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 201 IRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 54321 11122211 111 112468999999999998888 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 174 TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|+..|+. .++-..+.+....|.+..+.+|.+ .+.+ |.-...+|.+...+.
T Consensus 256 Tr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~E---Rag~~~~GSiT~~~t 305 (432)
T PRK06793 256 TRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLE---RSGKTQKGSITGIYT 305 (432)
T ss_pred HHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHH---HhccCCCcceEEEEE
Confidence 9999996 445455556554588888888853 3444 444457888766654
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=103.84 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=99.5
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 23 LLNGL-TGYAEPARILAVMGPSGSGKSTLLDALAG-RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 23 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG-~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
-|+.+ .+=+++|.++.|.|++|||||||...++- ..+ .| ..+.|+..+. +..+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g-------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-----QG-------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-----CC-------------CEEEEEEcCC------CHHHH
Confidence 35554 55699999999999999999999988752 111 11 2355665532 33443
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT--RPQLLFLDEPTSG-- 176 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~--~P~lllLDEPtsG-- 176 (661)
+.-...+. ..-. +.+. -|.-...+..+.. ....|.++++.+....+++. +|+++++||||+.
T Consensus 69 ~~~~~~~g----~~~~-------~~~~-~g~l~i~~~~~~~--~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVK----IDIS-------DFFL-WGYLRIFPLNTEG--FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCC----CChh-------HHHh-CCCceEEeccccc--cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 33222221 1111 1100 0111111111110 12356788999999999998 9999999999965
Q ss_pred -CCHHHHHHHHHHHHHHHhcCCEEEEEecCCch------HHHhhcCeEEEEeC
Q 045930 177 -LDSAAAFFVVKILKNIAHDGRTIISSIHQPSS------EVFALFDDLFLLSG 222 (661)
Q Consensus 177 -LD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~------~i~~~~D~v~lL~~ 222 (661)
.|......+++.++.++++|.|+++++|++.. .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 44555555556677777789999999998642 14567787777763
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-09 Score=133.37 Aligned_cols=69 Identities=26% Similarity=0.253 Sum_probs=61.4
Q ss_pred cccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEEEecCCchHHHhh
Q 045930 145 RGISGGEKK------RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-----DGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 145 ~~LSgGerq------RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~s~Hq~~~~i~~~ 213 (661)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||++ ..+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHH
Confidence 369999999 99999999999999999999999999999999999988742 378999999996 466665
Q ss_pred c
Q 045930 214 F 214 (661)
Q Consensus 214 ~ 214 (661)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=99.92 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
.++++|..+|+++++|||. |..+.. .+.+.+..|..++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~----~~l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR----LALTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH----HHHHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778898999999999996 555433 33345667999999999974 456788887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.3e-09 Score=129.12 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=66.8
Q ss_pred cccccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 045930 143 HWRGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 143 ~~~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.+.|+.+++ +.+||++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 34579999999999999985 67799999999999999999999999999975 478999999974 457899998
Q ss_pred EEe
Q 045930 219 LLS 221 (661)
Q Consensus 219 lL~ 221 (661)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=112.00 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=95.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.++++.+..+++|++++++||||+||||++..|++.+... .|. +.|+++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC------------CeEEEEeCCc---cchhHHHHH
Confidence 3566777778899999999999999999999999976321 221 2478888876 347899999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK-RLSIALEILTRP-----QLLFLDEPTS 175 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq-RvsIa~aL~~~P-----~lllLDEPts 175 (661)
.+.++... .+........+...+..+|.+..+.++.+ ...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98776531 11111122334444556777766666653 2222222 234455555555 6899999998
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 045930 176 GLDSAAAFFVVKILKNIAHDGRTIISSIH 204 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~g~tvi~s~H 204 (661)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344455555444544333333
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-08 Score=120.11 Aligned_cols=77 Identities=31% Similarity=0.397 Sum_probs=66.6
Q ss_pred ccccCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEecCCchHH
Q 045930 144 WRGISGGEKK------RLSIALEILTR-----P-QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR-TIISSIHQPSSEV 210 (661)
Q Consensus 144 ~~~LSgGerq------RvsIa~aL~~~-----P-~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~s~Hq~~~~i 210 (661)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.+.|+.++..|. +||++||++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 4589999999 89999998864 3 67999999999999999999999999987664 899999997 34
Q ss_pred HhhcCeEEEEeC
Q 045930 211 FALFDDLFLLSG 222 (661)
Q Consensus 211 ~~~~D~v~lL~~ 222 (661)
...+|+++.+..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 567999999964
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.2e-08 Score=124.48 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=67.6
Q ss_pred ccccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 045930 144 WRGISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL 219 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l 219 (661)
+..||||||++++||++++. +|++++||||++|||+.....+.+.|+++++ +..+|++||++ .....||+++.
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAIG 1148 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeEe
Confidence 45899999999999999985 6899999999999999999999999999865 47899999996 46689999998
Q ss_pred Ee
Q 045930 220 LS 221 (661)
Q Consensus 220 L~ 221 (661)
+.
T Consensus 1149 ~~ 1150 (1164)
T TIGR02169 1149 VT 1150 (1164)
T ss_pred EE
Confidence 75
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-08 Score=111.86 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=44.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee-EEEECCeec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG-NVLLNGKKR 75 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~i~~~g~~~ 75 (661)
+.+|++||+++++||+++|+|||||||||||+ +|+..+. +| +|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEEC
Confidence 46899999999999999999999999999999 6776653 55 899999865
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-08 Score=108.15 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=111.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----------cccCeEEEEecCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----------LDYGGVAYVTQEN 89 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----------~~~~~i~yv~Q~~ 89 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..++++..-|.|-.+|.+.. ..+..+++++|++
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 999999999999999999999999999998776444466655554321 1244699999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEE
Q 045930 90 IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLF 169 (661)
Q Consensus 90 ~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lll 169 (661)
..+..+++.|++.+.+......+ +.|--+++ .+...++.. |+ +++ .
T Consensus 222 s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a~A~------RE--------isl-----------~ 267 (434)
T PRK07196 222 SPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYAMAQ------RE--------IAL-----------S 267 (434)
T ss_pred ChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHHhhh------hH--------HHH-----------h
Confidence 99999999999988776421100 00000000 011111110 11 111 1
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHh-c--C-CEEEEEecCCchHHH-hhcCeEEEEeCCeEEEec
Q 045930 170 LDEP--TSGLDSAAAFFVVKILKNIAH-D--G-RTIISSIHQPSSEVF-ALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 170 LDEP--tsGLD~~~~~~i~~~L~~la~-~--g-~tvi~s~Hq~~~~i~-~~~D~v~lL~~G~~v~~G 229 (661)
+.|| +.|-.+.-...+-+++.+..+ + | .|.+.+..-+.+++. -.+|.+.-+-||+++-+-
T Consensus 268 ~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 268 LGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred cCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 2344 336666666667777777632 2 3 466777666555443 357888888899998653
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=79.80 Aligned_cols=118 Identities=28% Similarity=0.347 Sum_probs=76.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
+++.+.|.||+|+||||+++.|+....... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 467899999999999999999999876421 1233343322110 0000000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK----- 187 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~----- 187 (661)
......+ .....+++..+..++.+--.+|+++++||+..-.+.........
T Consensus 51 -----------------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -----------------LIIVGGK-------KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -----------------hhhhhcc-------CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 0000000 12367778888888888877899999999999999998887665
Q ss_pred -HHHHHHhcCCEEEEEec
Q 045930 188 -ILKNIAHDGRTIISSIH 204 (661)
Q Consensus 188 -~L~~la~~g~tvi~s~H 204 (661)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22333345788999988
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-08 Score=112.76 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=98.4
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCCceeeEEEECCeecc--c--ccCeEEEEecCCCCCCCC
Q 045930 23 LLNGL-TGYAEPARILAVMGPSGSGKSTLLDAL--AGRLSGNVVMTGNVLLNGKKRR--L--DYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 23 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~L--aG~~~~~~~~~G~i~~~g~~~~--~--~~~~i~yv~Q~~~l~~~l 95 (661)
-|+.+ .+=+.+|..+.|.||+|||||||..-. .|....+ +.-+.+...... . ..+..|+-.++..--..
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~- 84 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGK- 84 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCc-
Confidence 35664 567999999999999999999998766 3433311 222333222110 0 01122332221100000
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA--LEILTRPQLLFLDEP 173 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa--~aL~~~P~lllLDEP 173 (661)
+.+ + ..... .....+++.+++++..+.... .+|+|++|||.|+ .++..+|+..
T Consensus 85 -----l~~---~----~~~~~---~~~~~~~~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 85 -----LFI---L----DASPD---PEGQDVVGGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred -----eEE---E----ecCch---hccccccccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 000 0 00000 011123455666666666553 5999999999999 6666665443
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH-------H-HhhcCeEEEEe
Q 045930 174 TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE-------V-FALFDDLFLLS 221 (661)
Q Consensus 174 tsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~-------i-~~~~D~v~lL~ 221 (661)
...+..+.+.++.+++.|+|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999999988899999999986421 2 55789999997
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.8e-07 Score=98.17 Aligned_cols=173 Identities=20% Similarity=0.232 Sum_probs=104.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-------------ccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-------------DYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-------------~~~~i~yv~Q 87 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..++. .|.+...|...+. ..+.+.++.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 4689999 999999999999999999999999999998764 4554444432110 0122333333
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
.+. ++.+-. + ....--.+.+-+.+.|- |.++= ...++- -..-.|++.
T Consensus 227 ~d~-----~p~~r~------~------~~~~a~t~AE~frd~G~----~Vll~---~DslTr----~A~A~REis----- 273 (440)
T TIGR01026 227 SDQ-----SPLLRL------K------GAYVATAIAEYFRDQGK----DVLLL---MDSVTR----FAMAQREIG----- 273 (440)
T ss_pred CCC-----CHHHHH------H------HHHHHHHHHHHHHHCCC----CEEEE---EeChHH----HHHHHHHHH-----
Confidence 221 111110 0 00011112233333342 22110 011221 111111111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHhcCC-------EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 168 LFLDEP--TSGLDSAAAFFVVKILKNIAHDGR-------TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 168 llLDEP--tsGLD~~~~~~i~~~L~~la~~g~-------tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||.. ..++|++.-+.+|+++.+...++
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhh
Confidence 234775 559999999999999999887666 8888888853 35789999999999999887543
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=105.30 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=55.3
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh--hcCeEEEEeCCeEE
Q 045930 157 IALEILTRPQLLFLDEPTSGL-DSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFA--LFDDLFLLSGGETV 226 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGL-D~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~--~~D~v~lL~~G~~v 226 (661)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+|. ++.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677888999999999999999 799999999999999888999999999985 4543 34444444444444
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-08 Score=99.44 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=27.7
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 045930 23 LLNGL-TGYAEPARILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 23 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~La 55 (661)
-|+.+ .+=+++|++++|.||+|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 35553 5679999999999999999999988665
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-07 Score=101.46 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=54.7
Q ss_pred ccCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 146 GISGGEKKRLSIALEILT---------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~---------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. |..|++|+|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 589999999999999999 99999999999999999999999999764 779999999963
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-07 Score=93.38 Aligned_cols=112 Identities=15% Similarity=0.279 Sum_probs=66.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHh-cCCCCCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAH-LRLPSNMN 114 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~~~~~~~ 114 (661)
+++|.||||||||||.++|++.+.. |. +.++++|+.. ..++..+....... ...|....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~-----~~--------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN-----PK--------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAFD 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-----CC--------------eEEEEecccc-cccccccHHHhccCCCCCCCccc
Confidence 5799999999999999999998621 21 3344444322 22333333221111 11111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 115 NEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 115 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
.+...+.++.+...+..+..+ ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 61 ----~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 61 ----FDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ----HHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 223445666665544444433 2477777766554 5688999999999999876
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.4e-07 Score=95.51 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
.++.+|-.+|+++++||+. |..++...++ .+..|.+|+.|+|-.+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3566788899999999997 8888765444 4567999999999864 44667777654
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-05 Score=81.57 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=111.4
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Q 045930 417 VFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGISHFIYAGLDLTSSIAVIESCMMMIA-SMVPN 495 (661)
Q Consensus 417 vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~~f~~f~l~l~~~~~~~~s~~~~i~-~~~p~ 495 (661)
.+.|=..+..-+ ..+++++.+...-...+...+...++.+..|... ...+..+...+.+......++|.+++ ....+
T Consensus 119 ~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 196 (286)
T COG0842 119 TLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPF-LGSLLLLLLLLLLLLLATVALGLLLSTFAKSQ 196 (286)
T ss_pred cHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333334444432 5667777666666665555555555556666322 23444444455555555667777555 36677
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHHHhhhCCCccccCCCCCCCcCHHHHHHhhh
Q 045930 496 YLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFDAIDRDGPKLKGDVILKTML 575 (661)
Q Consensus 496 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~ 575 (661)
...+..++..+..++..++|.+.|.+.+|.+ .+| +.+++|..|+.+++-.....+
T Consensus 197 ~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~-~~~-i~~~~P~t~~~~~~~~~~~~~----------------------- 251 (286)
T COG0842 197 LQCASAVGNLLILPLGFLSGVFFPLELLPAW-LQG-ISYINPLTYAIDALRYVYLGG----------------------- 251 (286)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhhhHHH-HHH-HHHHccHHHHHHHHHHHHhCC-----------------------
Confidence 8888888888889999999999999999984 788 999999999999875432211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045930 576 GMNLDRSKWWDLAVVVAILISYRVIFFAILKFREK 610 (661)
Q Consensus 576 ~~~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 610 (661)
.. ..+.|.++++++++.+++.+++...+|.+++
T Consensus 252 -~~-~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 252 -WR-NDGIWISLLILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred -Cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 11 1126778889999999999998887776654
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-07 Score=98.99 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=61.6
Q ss_pred ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 146 GISGGEKKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... .++|.+++.| ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence 47999999999999999 8999999999999999999999998886532 3555555443 57899
Q ss_pred EEEEeCCeEE
Q 045930 217 LFLLSGGETV 226 (661)
Q Consensus 217 v~lL~~G~~v 226 (661)
++.+.+|++.
T Consensus 335 ~~~~~~~~~~ 344 (349)
T PRK14079 335 TLRIEAGVFT 344 (349)
T ss_pred EEEEeccEec
Confidence 9999998864
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-07 Score=109.90 Aligned_cols=87 Identities=32% Similarity=0.357 Sum_probs=73.6
Q ss_pred cccccccCc--cccccCHHHHHHHHHHHHHhh------C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 045930 134 CADRLIGNW--HWRGISGGEKKRLSIALEILT------R--PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203 (661)
Q Consensus 134 ~~d~~vg~~--~~~~LSgGerqRvsIa~aL~~------~--P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~ 203 (661)
..+...|+. .+..|||||+-.++||.+|+. + -+.+||||||..||+.....++++|..+...|++|+++|
T Consensus 801 ~~~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIIS 880 (908)
T COG0419 801 VVVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIIS 880 (908)
T ss_pred EEEEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 334444443 457899999998888877653 5 699999999999999999999999999998899999999
Q ss_pred cCCchHHHhhcCeEEEEeC
Q 045930 204 HQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 204 Hq~~~~i~~~~D~v~lL~~ 222 (661)
|++ ++.+.+|.++.+..
T Consensus 881 H~e--el~e~~~~~i~V~k 897 (908)
T COG0419 881 HVE--ELKERADVRIRVKK 897 (908)
T ss_pred ChH--HHHHhCCeEEEEEe
Confidence 995 78899999999863
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.1e-07 Score=107.48 Aligned_cols=136 Identities=24% Similarity=0.291 Sum_probs=84.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
.|=+|+++. ..+.++.|.|||++||||+|+.++-.. -. ..| .|||-+..- +.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilA---q~G----------------~~VPa~~a~---i~~--- 649 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLA---QIG----------------SFVPAESAR---IGI--- 649 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHH---hcC----------------CceeccceE---ecc---
Confidence 466777777 677899999999999999999987542 00 011 122222110 011
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCC---CC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEP---TS 175 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEP---ts 175 (661)
+++++.++|- .|... +|.|-=+.....++..|- ++++++++||| |+
T Consensus 650 ---------------------~d~I~triga---~d~i~-----~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 650 ---------------------VDRIFTRIGA---SDDLA-----SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ---------------------cCeeeeccCc---ccccc-----cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1111111221 11111 346665555555555544 48999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCe
Q 045930 176 GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.+|..+ ....+++.+.+. |.+++++||.. ++.+++|+
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 888443 345567777765 58999999993 67788775
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.5e-07 Score=88.25 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=60.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-cc-ccCeEEEEecCC--CCCCCCCHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RL-DYGGVAYVTQEN--IMLGTLTVR 98 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~-~~~~i~yv~Q~~--~l~~~lTV~ 98 (661)
..+=+.+.+++|+.++|+||||||||||+++|+|.+++. .|.|.+.+... .. ....++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344456678999999999999999999999999998763 78888877532 11 234466666544 346678888
Q ss_pred HHHHHHHhc
Q 045930 99 ETIAYSAHL 107 (661)
Q Consensus 99 E~l~~~~~l 107 (661)
+.+....+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 888776553
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-06 Score=94.79 Aligned_cols=170 Identities=22% Similarity=0.197 Sum_probs=98.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC---eecc---------cccCeEEEEecC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---KKRR---------LDYGGVAYVTQE 88 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g---~~~~---------~~~~~i~yv~Q~ 88 (661)
..+++.++ .+.+||.++|+|||||||||||++|++..++. .|.|.+.| ++.. ..++.+++|+|.
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs 228 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLKKAVAVVATS 228 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC
Confidence 56888886 89999999999999999999999999998764 68887765 3211 123579999997
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH-HHHHH-HHHHHHHhhCCC
Q 045930 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG-GEKKR-LSIALEILTRPQ 166 (661)
Q Consensus 89 ~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg-GerqR-vsIa~aL~~~P~ 166 (661)
+.-.. .+-...+.+ -.+.+.+.+-|- |.++= ...++- -+-+| +++
T Consensus 229 d~~~~---~r~~~~~~a--------------~~iAEyfrd~G~----~Vll~---~DslTr~A~A~rEisl--------- 275 (450)
T PRK06002 229 DESPM---MRRLAPLTA--------------TAIAEYFRDRGE----NVLLI---VDSVTRFAHAAREVAL--------- 275 (450)
T ss_pred CCCHH---HHHHHHHHH--------------HHHHHHHHHcCC----CEEEe---ccchHHHHHHHHHHHH---------
Confidence 64110 111111111 001111211121 11110 011110 11111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--c--C-CEEEEEecCCchHHHh-hcCeEEEEeCCeEEEec
Q 045930 167 LLFLDEP--TSGLDSAAAFFVVKILKNIAH--D--G-RTIISSIHQPSSEVFA-LFDDLFLLSGGETVYFG 229 (661)
Q Consensus 167 lllLDEP--tsGLD~~~~~~i~~~L~~la~--~--g-~tvi~s~Hq~~~~i~~-~~D~v~lL~~G~~v~~G 229 (661)
.++|| +.|-.+.--..+-+++.+..+ + | .|.+.+..-+.+++.+ .+|.+.-+-||+++-+-
T Consensus 276 --~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr 344 (450)
T PRK06002 276 --AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDR 344 (450)
T ss_pred --hcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEcH
Confidence 23454 336666666667777777664 2 3 4777777666555433 57777778889988653
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-05 Score=93.20 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=43.5
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 160 EILTRPQLLFLDEPTSGLD-SAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD-~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||+|.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3556899999999999999 88899999999999888999999999984
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-05 Score=81.12 Aligned_cols=155 Identities=20% Similarity=0.121 Sum_probs=84.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
-..|+++.+-+.+|+++.|.|++|+|||||+..++...... .| ..+.|+.-+. +..+.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g-------------~~vl~iS~E~------~~~~~ 74 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HG-------------VRVGTISLEE------PVVRT 74 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cC-------------ceEEEEEccc------CHHHH
Confidence 45789998899999999999999999999998887543210 01 1244443332 12222
Q ss_pred HHHHH----hcCCCCC-CCHHHHHHHHHHHHHHcC---CCccccccccCccccccCHHHHHHHHHHHHHhh--CCCEEEE
Q 045930 101 IAYSA----HLRLPSN-MNNEEITDVIEEAITEMG---LEDCADRLIGNWHWRGISGGEKKRLSIALEILT--RPQLLFL 170 (661)
Q Consensus 101 l~~~~----~l~~~~~-~~~~~~~~~v~~~l~~lg---L~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~--~P~lllL 170 (661)
..... ....... .......+.++++++.+. .-...|.. ...+ -.+-+..++.++. +|+++++
T Consensus 75 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~------~~~~--~~~i~~~i~~~~~~~~~~~vvI 146 (271)
T cd01122 75 ARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSF------GEYS--MDSVLEKVRYMAVSHGIQHIII 146 (271)
T ss_pred HHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCC------CccC--HHHHHHHHHHHHhcCCceEEEE
Confidence 21111 1110000 000111223334443331 11111110 0111 2344455555553 7999999
Q ss_pred eCCCCCCCH-------H-HHHHHHHHHHHHHhc-CCEEEEEecC
Q 045930 171 DEPTSGLDS-------A-AAFFVVKILKNIAHD-GRTIISSIHQ 205 (661)
Q Consensus 171 DEPtsGLD~-------~-~~~~i~~~L~~la~~-g~tvi~s~Hq 205 (661)
|..+.-.+. . ....++..|++++++ |.||++++|-
T Consensus 147 D~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 147 DNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred CCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 998764432 1 234677778888775 8999999875
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.7e-06 Score=104.58 Aligned_cols=163 Identities=22% Similarity=0.299 Sum_probs=89.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSA 105 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 105 (661)
=+++..+++++++|+|++|+|||||++++++..... ..|.+.+++........ .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~--~~~~~~~~~-------~~~~~-- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSME--IYSSANPDD-------YNMKL-- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchh--hcccccccc-------cchhH--
Confidence 346677889999999999999999999998876542 47888876532111000 000000000 00000
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 045930 106 HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185 (661)
Q Consensus 106 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i 185 (661)
...++.+.++++..++. +. .+ ++.|+|+ ..++-+++||+- |... .
T Consensus 266 ----------~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~L------~~krvLLVLDdv----~~~~---~ 310 (1153)
T PLN03210 266 ----------HLQRAFLSEILDKKDIK------IY-----HL-GAMEERL------KHRKVLIFIDDL----DDQD---V 310 (1153)
T ss_pred ----------HHHHHHHHHHhCCCCcc------cC-----CH-HHHHHHH------hCCeEEEEEeCC----CCHH---H
Confidence 01122344444444331 11 12 5666663 355667788984 4333 3
Q ss_pred HHHHHHHH---hcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEecCCCChhHHHHhcCC
Q 045930 186 VKILKNIA---HDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVYFGEAKSAPTFFAEAGF 243 (661)
Q Consensus 186 ~~~L~~la---~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~~G~~~~~~~~f~~~g~ 243 (661)
++.|.... ..|.+||+|||+. ..+... +|+++.+.. -+.+++.+.|...-+
T Consensus 311 l~~L~~~~~~~~~GsrIIiTTrd~-~vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 311 LDALAGQTQWFGSGSRIIVITKDK-HFLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHhhCccCCCCcEEEEEeCcH-HHHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 44444432 3588999999995 333333 566654431 123467777776544
|
syringae 6; Provisional |
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=75.48 Aligned_cols=129 Identities=11% Similarity=-0.099 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccCCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 045930 413 EEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSFATTSITYYMVKFRPGIS--HFIYAGLDLTSSIAVIESCMMMIA 490 (661)
Q Consensus 413 ~er~vf~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~I~Y~m~gl~~~~~--~f~~f~l~l~~~~~~~~s~~~~i~ 490 (661)
.|+.++.|-+..-. +.+.|+++|.+...-..++..++...+.+. .|.+.... ..+.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777776666 799999999999998888888877777754 48876532 122222222333334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCcccccccccccccHHHHHHHHHH
Q 045930 491 SMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAY 546 (661)
Q Consensus 491 ~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~i~yis~~~ya~e~l~ 546 (661)
...++.+... ....++.++++.+|.+.|.+++|+| .+| +.+++|++|+.+++-
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~w-lq~-ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDW-AQP-LIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHH-HHH-HHhhCCccHHHHHHH
Confidence 5555544333 3466677888888999999999984 777 999999999999873
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.9e-06 Score=106.35 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=52.3
Q ss_pred ccccCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 045930 144 WRGISGGEKKRLS----IALE--------ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205 (661)
Q Consensus 144 ~~~LSgGerqRvs----Ia~a--------L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq 205 (661)
..+||||||||+. +|++ +..+|++++|||||+|||+.+...+++.+.++ |.++|+++|.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 3689999999996 5644 55899999999999999999999999999888 7889999887
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-06 Score=85.33 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=42.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----ccCeEEEEecCCCCCCCCCHHHHHHH
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----DYGGVAYVTQENIMLGTLTVRETIAY 103 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----~~~~i~yv~Q~~~l~~~lTV~E~l~~ 103 (661)
+||+++|+|+||||||||+++|+|++.+ +.++|.+... .+...++.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998764 3455544211 11124555665444455555555544
|
|
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00057 Score=70.26 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045930 341 SILTQRSSLNMSRDFGYYWLRIAIYIILSVCVGSIFYDV----GTNYTAIYARGSCAAFISGFMTFMSIGGFPSFIEEMR 416 (661)
Q Consensus 341 ~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~lf~~~----~~~~~~i~~r~~~~~f~~~~~~~~s~~~~~~~~~er~ 416 (661)
+.+.||.++...|.|..+..-.+..++.|+.. ..|.+. ..+.++.. +.+.+......+ .+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~---~~f~~~~~~~~~----~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLT---PFFSLAPWVFLF----LIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHH---HHHHHHHHHHHH----HHHHH--HHH
Confidence 56889999999999999887777777666442 222111 11111111 111111101111 12221 335
Q ss_pred HHHHHhcCCCC--------cHHHHHHHHHHHHHHHHHHHHh---hhhhhhccccccc---CCHHHHHHHHHHHHHHHHHH
Q 045930 417 VFSRERLNGHY--------GVAVYILSNFLSSLPFLTAMSF---ATTSITYYMVKFR---PGISHFIYAGLDLTSSIAVI 482 (661)
Q Consensus 417 vf~rE~~~g~Y--------~~~ay~la~~l~~lP~~~~~~~---if~~I~Y~m~gl~---~~~~~f~~f~l~l~~~~~~~ 482 (661)
.+.+||++|.. +.+.+.++|.++-+-+.++..+ ++....++ .|.+ .+.+.++...+..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHHH
Confidence 56777777764 5688999999988655443332 12112211 1221 23444443334444444566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCC--cccccccccccccHHHHH
Q 045930 483 ESCMMMIASMVPNYLTGIIIGAGYLGIMMMTSGYFRLIPDI--PKVFWRYPIAYINYGAWA 541 (661)
Q Consensus 483 ~s~~~~i~~~~p~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~w~w~i~yis~~~ya 541 (661)
.++|.++++++.|...|..++..+... ++.|+-. ..++ |++ ..| +.|+||..|-
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~-~~~-l~~~sp~~~~ 206 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGS-AYT-ISELGLSYHY 206 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhH-HHH-HHHcCHHHHH
Confidence 799999999999988886655433222 2222211 2233 542 455 9999997664
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-06 Score=67.94 Aligned_cols=37 Identities=46% Similarity=0.687 Sum_probs=30.0
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 24 LNGLTGYAEP-ARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 24 L~~vs~~i~~-Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
.++.++.+.+ |++++|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456777776 569999999999999999999866543
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=69.65 Aligned_cols=47 Identities=38% Similarity=0.552 Sum_probs=36.5
Q ss_pred cccCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 045930 145 RGISGGEK-KRLSIALEIL------T------RPQLLFLDEPTSGLDSAAAFFVVKILKN 191 (661)
Q Consensus 145 ~~LSgGer-qRvsIa~aL~------~------~P~lllLDEPtsGLD~~~~~~i~~~L~~ 191 (661)
.++||||| ..+.++.+++ . .|++++||||+++||......+++.|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 46999999 4444444332 2 3799999999999999999999999875
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.01 E-value=4e-05 Score=70.24 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEEEecCCc
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-----DGRTIISSIHQPS 207 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~s~Hq~~ 207 (661)
++..........++.++++||.-.. +......+.+.+..... .+..+|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3445555666778999999998765 56666777888877753 4678888888653
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=88.60 Aligned_cols=47 Identities=28% Similarity=0.275 Sum_probs=42.3
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 161 ILTRPQLLFLDEPTSGLD-SAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD-~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||+|.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888999999999974
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-05 Score=75.73 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=32.7
Q ss_pred cccCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 045930 145 RGISGGEKKRLSIALEI-----LTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL-----~~~P~lllLDEPtsGLD~~~~~~i~~~L~~l 192 (661)
..++++++++.....+. ...|+++ |+|++|.....++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34788888877666553 2345555 99999999999999888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0001 Score=72.31 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCC-ccccccccCccccccCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 045930 121 VIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLS--IALEILT-RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195 (661)
Q Consensus 121 ~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvs--Ia~aL~~-~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~ 195 (661)
.+.+.++..++. -..-+++ ..+++||++++. +++.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~-----Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKA-----DKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECc-----ccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 345556665553 2222233 358999999977 4444433 2333 399999999999999999988764
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-05 Score=88.64 Aligned_cols=177 Identities=17% Similarity=0.184 Sum_probs=100.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------cccCeEEEEecCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------LDYGGVAYVTQENIM 91 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~~~~~i~yv~Q~~~l 91 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|++...+++.+.|.|-.+|++.. ...+++++|.....-
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~ 217 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDF 217 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCC
Confidence 4699999 999999999999999999999999999998776555699999987632 123567777665332
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEe
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLD 171 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLD 171 (661)
.+.+ +....+.+ ..+.+.+.+.|- |.++= ...|+ |.+-|.--+. +.++
T Consensus 218 p~~~--r~~a~~~a--------------~tiAE~fr~~G~----~Vll~---~DslT-----r~A~A~rEi~----l~~g 265 (428)
T PRK08149 218 SSVD--RCNAALVA--------------TTVAEYFRDQGK----RVVLF---IDSMT-----RYARALRDVA----LAAG 265 (428)
T ss_pred CHHH--HHhHHHHH--------------HHHHHHHHHcCC----CEEEE---ccchH-----HHHHHHHHhH----hhcC
Confidence 2210 00111111 011122222231 11100 00011 0010000000 2345
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHh--cC-CEEEEEecCCchHHHh-hcCeEEEEeCCeEEEecC
Q 045930 172 EPTS--GLDSAAAFFVVKILKNIAH--DG-RTIISSIHQPSSEVFA-LFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 172 EPts--GLD~~~~~~i~~~L~~la~--~g-~tvi~s~Hq~~~~i~~-~~D~v~lL~~G~~v~~G~ 230 (661)
||-+ |-.+.--..+-+++.+..+ .| .|.+.+..-+.+++.+ .+|.+.-+-||+++.+-.
T Consensus 266 e~P~~~Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~ 330 (428)
T PRK08149 266 ELPARRGYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRK 330 (428)
T ss_pred CCCcccccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCCCCCchhhhheeccEEEEEcHH
Confidence 6544 6666655566666666543 34 5777776655544433 578888888999987543
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=91.06 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=70.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----ceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH--HHHHHH
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNV-----VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE--TIAYSA 105 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~-----~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E--~l~~~~ 105 (661)
..+.++|+||||+|||||+++|.+..+... ...+-+.+||..... ..++ +-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~------------------d~~~i~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW------------------DPREVTNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC------------------CHHHHhHHhcC-
Confidence 356799999999999999999998764310 011224444432110 0111 11111
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 045930 106 HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185 (661)
Q Consensus 106 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i 185 (661)
.. .+...+...+.++.+|+.+..+..+. .+||| +||||| +..||...+..+
T Consensus 235 ------~~-~~~~~~~a~~~l~~~gl~~~~~g~v~-----~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 235 ------SV-HDPIYQGARRDLAETGVPEPKTGLVT-----DAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred ------Cc-cHHHHHHHHHHHHHcCCCchhcCchh-----hcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 01 11222345566788898877776653 58888 999999 899999999988
Q ss_pred HHHHHH
Q 045930 186 VKILKN 191 (661)
Q Consensus 186 ~~~L~~ 191 (661)
.+.|++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888865
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00019 Score=80.25 Aligned_cols=103 Identities=9% Similarity=0.174 Sum_probs=70.2
Q ss_pred hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCEEEEEe-cCCchHHHhhcCeEE-EEeCCeEEEecCCCCh-----
Q 045930 163 TRPQLLFLDEPTSGLDSA-AAFFVVKILKNIAHDGRTIISSI-HQPSSEVFALFDDLF-LLSGGETVYFGEAKSA----- 234 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~-~~~~i~~~L~~la~~g~tvi~s~-Hq~~~~i~~~~D~v~-lL~~G~~v~~G~~~~~----- 234 (661)
.+|++|++|||...+|.. +...+...+..+.+.|+.+|+++ |+| .++..+.|++. -+..|-++...+++..
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p-~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP-QKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCH-HHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 379999999999988765 45678888988888788888877 555 56666667665 3567888888888742
Q ss_pred h-HHHHhcCCCCCCCCCchhHHHHhhccCchhHHH
Q 045930 235 P-TFFAEAGFPCPTRRNPSDHFLRCINSDFDVVTE 268 (661)
Q Consensus 235 ~-~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~ 268 (661)
+ ...+..|...|+ +..+|+.+.+..+.+.+..
T Consensus 272 L~~~~~~~~~~l~~--ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 272 ARKMLEIEHGELPE--EVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHhcCCCCCH--HHHHHHHhccccCHHHHHH
Confidence 1 233344555543 4566666666666554443
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.9e-06 Score=79.86 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch-HHHhhcCeEEEEeCC
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS-EVFALFDDLFLLSGG 223 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~-~i~~~~D~v~lL~~G 223 (661)
.|+-.|..||..+..+|+.+..+| +.+||.....+.+.+++..++|.+|++.+|.... ....+||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999988887 8999999999999998887667899999998632 366789999887654
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.1e-05 Score=85.76 Aligned_cols=63 Identities=25% Similarity=0.429 Sum_probs=49.5
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------------CCchHHHhhcCeEEEEeCCeE
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH---------------QPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~H---------------q~~~~i~~~~D~v~lL~~G~~ 225 (661)
|..+|+++++||.-..-| ++.+..++..|..++.|.| +. ..+...+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCEE
Confidence 678999999999985332 4444555556888999999 64 467789999999999999
Q ss_pred --EEecCC
Q 045930 226 --VYFGEA 231 (661)
Q Consensus 226 --v~~G~~ 231 (661)
+|++..
T Consensus 393 ~~v~~~~~ 400 (602)
T PRK13764 393 SKVYDLEF 400 (602)
T ss_pred EEEEeeee
Confidence 787763
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.9e-05 Score=77.25 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-cCCEEEEEecCCchHHHhhcC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV-KILKNIAH-DGRTIISSIHQPSSEVFALFD 215 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~-~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D 215 (661)
|-+|++=...-+++.+++++||+-.|=++.....+. ..++.+.+ .+..++++||.. ++.++.+
T Consensus 109 E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~~ 173 (235)
T PF00488_consen 109 EMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELLE 173 (235)
T ss_dssp HHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHHH
T ss_pred hHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHhh
Confidence 333443333344567899999999999999988875 45677777 488999999995 4544433
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-05 Score=87.55 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=44.2
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHh-cCCEEEEEecCCch-------HHHhhcCeEEEEeCCe
Q 045930 163 TRPQLLFLDEPTSG----LD-----SAAAFFVVKILKNIAH-DGRTIISSIHQPSS-------EVFALFDDLFLLSGGE 224 (661)
Q Consensus 163 ~~P~lllLDEPtsG----LD-----~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~-------~i~~~~D~v~lL~~G~ 224 (661)
.+|+++++|.-++= ++ .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|++++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987642 11 2334566677888776 49999999997432 2567899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.89 E-value=2e-05 Score=85.57 Aligned_cols=75 Identities=23% Similarity=0.165 Sum_probs=46.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc----cCeEEEEecCCCCCCCCCHHHHHHHHHh
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD----YGGVAYVTQENIMLGTLTVRETIAYSAH 106 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 106 (661)
++|.+++|.||+||||||+|++|++.+.......+.|.....+.... ....+.+.|...--...+..+.+.-+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48899999999999999999999998642111123554444443221 2235777886432222355566554443
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.8e-05 Score=86.09 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=70.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC---eecc------c--ccCeEEEE----
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---KKRR------L--DYGGVAYV---- 85 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g---~~~~------~--~~~~i~yv---- 85 (661)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.| +... . .....+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4688998 999999999999999999999999999987431 236666655 2211 0 11234445
Q ss_pred -ecCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC
Q 045930 86 -TQEN--IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE 132 (661)
Q Consensus 86 -~Q~~--~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 132 (661)
+|++ .+.+.+ +..++.-..+.+........+...++.+++++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 7875 244444 555554444333111123356677888999999984
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 661 | ||||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-16 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-15 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-15 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-14 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-13 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-13 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-13 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-12 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-12 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-11 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-11 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-11 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-11 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-11 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-10 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-10 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-10 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-09 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-09 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-09 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-08 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-08 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-08 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-08 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 4e-08 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 4e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-08 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-07 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-07 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 6e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 1e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 3e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-04 |
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-34
Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 22/222 (9%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73
F L L ILAV+G +G GKSTLLD L G + G + +
Sbjct: 11 GFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEVYQS 67
Query: 74 KRRLDYGGVAYVTQENIMLGTLTVRETIAY--SAHLRLPSNMNNEEITDVIEEAITEMGL 131
+ +V Q +V + + S H+ + + + V +A+ + L
Sbjct: 68 --------IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY-QVAMQALDYLNL 118
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
A R + +SGG+++ + IA I + +L+ LDEPTS LD A V+ +L +
Sbjct: 119 THLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173
Query: 192 IAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+A T++ + HQP+ V A+ + LL+ FGE +
Sbjct: 174 LAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ-NFKFGETR 213
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-32
Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 42/229 (18%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK------ 74
L L+G IL ++GP+G+GKSTLL +AG SG G++ G+
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSA 68
Query: 75 ----RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
AY++Q+ V + + + T+++ + +
Sbjct: 69 TKLALHR-----AYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLNDVAGALA 115
Query: 131 LEDCADRLIGNWHWRGISGGEKKRLSIA-------LEILTRPQLLFLDEPTSGLDSAAAF 183
L+D R +SGGE +R+ +A + QLL LDEP + LD A
Sbjct: 116 LDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170
Query: 184 FVVKILKNIAHDGRTIISSIHQPSSEVFALF-DDLFLLSGGETVYFGEA 231
+ KIL ++ G I+ S H + +LL GG+ + G
Sbjct: 171 ALDKILSALSQQGLAIVMSSHDLN--HTLRHAHRAWLLKGGKMLASGRR 217
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-30
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 22/209 (10%)
Query: 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-- 58
M V V + G + +L G++ E I ++GP+G+GK+T L ++ +
Sbjct: 13 MGAV--VVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 67
Query: 59 -SGNVVMTG-NVLLNGKK-RRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN 115
SG V + G NV+ + R+L ++Y+ +E + E + + A ++
Sbjct: 68 SSGIVTVFGKNVVEEPHEVRKL----ISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSS 120
Query: 116 EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175
EI +++E A GL + + + S G ++L IA ++ P+L LDEPTS
Sbjct: 121 SEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 176 GLDSAAAFFVVKILKNIAHDGRTIISSIH 204
GLD A V KILK + +G TI+ S H
Sbjct: 176 GLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 27/210 (12%)
Query: 38 AVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGK------KRRLDYGGVAYVTQE 88
+ G +G+GK+TLL+ L SG V + G + ++ + +V+
Sbjct: 51 ILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI-----GFVSHS 105
Query: 89 NIM--LGTLTVRETI--AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
+ V + + + + ++++E + + + +G+ A + IG
Sbjct: 106 LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLLKLVGMSAKAQQYIGY--- 161
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR--TIISS 202
+S GEK+R+ IA ++ +PQ+L LDEP +GLD A ++ IL +++ +I
Sbjct: 162 --LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYV 219
Query: 203 IHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
H E+ A F + LL G+++ G +
Sbjct: 220 THFI-EEITANFSKILLLKDGQSIQQGAVE 248
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 8e-27
Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 24/206 (11%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
L +T E ++ GP+G GK+TLL ++ L G ++ G + K +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGK----- 79
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG 140
+ ++ +E I+ ++V + + A L + + + I +A+ + + D +L
Sbjct: 80 -IFFLPEEIIVPRKISVEDYLKAVASLY---GVKVNK--NEIMDALESVEVLDLKKKL-- 131
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+S G +R+ +A +L ++ LD+P +D + V+K + I + +I
Sbjct: 132 ----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 201 SSIHQPSSEVFALFDDLFLLSGGETV 226
S S E + D L T
Sbjct: 188 IS----SREELSYCDVNENLHKYSTK 209
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 24/189 (12%)
Query: 13 PNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG 72
P+ +LN G + IL +MG +G+GK+TL+ LAG L + G +
Sbjct: 357 PSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQDIPKL 413
Query: 73 KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE 132
V+ Q+ TVR+ + +N + TDV++ + ++
Sbjct: 414 N--------VSMKPQKIAPKFPGTVRQLFFKKIRGQF---LNPQFQTDVVKP----LRID 458
Query: 133 DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN- 191
D D+ + + +SGGE +R++I L + + +DEP++ LDS K+++
Sbjct: 459 DIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 192 IAHDGRTII 200
I H+ +T
Sbjct: 514 ILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-20
Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 22/179 (12%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL-----SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI 90
+L ++G +G GKST L LAG+ + ++ + + +++I
Sbjct: 105 VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDI 164
Query: 91 MLG---------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
++ + L + E+ + ++ I + LE+ R I
Sbjct: 165 KAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKRDIEK 221
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+SGGE +R +I + + + DEP+S LD +I++++ + +I
Sbjct: 222 -----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 4e-25
Identities = 46/199 (23%), Positives = 83/199 (41%), Gaps = 30/199 (15%)
Query: 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNV 62
E V P L G ++ ++GP+G GK+T + LAG G V
Sbjct: 354 RETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Query: 63 VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
V + + +Y G TV E ++ +L SN T+++
Sbjct: 414 EWDLTVAYKPQYIKAEYEG--------------TVYELLSKIDSSKLNSN---FYKTELL 456
Query: 123 EEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182
+ +G+ D DR + + +SGGE +R++IA +L + LDEP++ LD
Sbjct: 457 KP----LGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 507
Query: 183 FFVVKILKNIA-HDGRTII 200
V + ++++ + +T +
Sbjct: 508 LAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 2e-21
Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 25/177 (14%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKK--------RRLDYGGVAY 84
++ ++GP+G+GK+T + LAG+L + + ++ + RL G +
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178
Query: 85 VTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
V + + L V+ + + + EE + E+ LE+ DR +
Sbjct: 179 VVKPQYVDLLPKAVKGKVRE--------LLKKVDEVGKFEEVVKELELENVLDRELHQ-- 228
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+SGGE +R++IA +L + F DEP+S LD V ++++ +A++G+ ++
Sbjct: 229 ---LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 6e-25
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 29/222 (13%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKK-----R 75
L G+ + + A++G +G GKSTL G L SG ++ + +K R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 76 RLDYGGVAYVTQ--ENIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGL 131
+ V Q +N + +V + +++ NM +EI ++ A+ G+
Sbjct: 84 ES----IGIVFQDPDNQLFSA-SVYQDVSFG-----AVNMKLPEDEIRKRVDNALKRTGI 133
Query: 132 EDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
E D+ +S G+KKR++IA ++ P++L LDEPT+GLD ++K+L
Sbjct: 134 EHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 192 IAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ + G TII + H V D++F++ G + G K
Sbjct: 189 MQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPK 229
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 38/232 (16%)
Query: 16 GSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK- 74
G+ ++ L ++ L V G +GSGKSTLL +AG + +G+VL +G++
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERK 71
Query: 75 -----RRLDYGGVAYVTQ--ENIMLGTLTVRETIAYSAHLRLPSNMN-NEEITDVIEEAI 126
RR + Q E+ V + +A++ N + + ++++A+
Sbjct: 72 KGYEIRRN----IGIAFQYPEDQFFAE-RVFDEVAFA-----VKNFYPDRDPVPLVKKAM 121
Query: 127 TEMGL--EDCADR----LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+GL + DR L SGGEK+R++IA I+ P +L LDEP GLD
Sbjct: 122 EFVGLDFDSFKDRVPFFL---------SGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+++I++ G+T+I H V D + +L G+ V+ G
Sbjct: 173 GKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRM 223
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-24
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 30/202 (14%)
Query: 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---S 59
+ E V P L G + ++ ++GP+G GK+T + LAG
Sbjct: 281 EIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 340
Query: 60 GNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT 119
G + V + + DY G TV E ++ + +N T
Sbjct: 341 GKIEWDLTVAYKPQYIKADYEG--------------TVYELLS---KIDASKLNSNFYKT 383
Query: 120 DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179
++++ +G+ D DR + +SGGE +R++IA +L + LDEP++ LD
Sbjct: 384 ELLKP----LGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434
Query: 180 AAAFFVVKILKNIA-HDGRTII 200
V + ++++ + +T +
Sbjct: 435 EQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-19
Identities = 40/181 (22%), Positives = 85/181 (46%), Gaps = 25/181 (13%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNV---VMTGNVLLNGKK--------RRLDYG 80
+ ++ ++GP+G+GKST + LAG+L N+ + + ++ + +L G
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 81 GVAYVTQE-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLI 139
+ V + + L V+ + + + T +EE + + LE+ +R I
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIE--------LLKKADETGKLEEVVKALELENVLEREI 156
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
+ +SGGE +R++IA +L F DEP+S LD + ++ ++ +G+++
Sbjct: 157 QH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV 211
Query: 200 I 200
+
Sbjct: 212 L 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-24
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 22/189 (11%)
Query: 13 PNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG 72
L G A+ I+ ++GP+G GK+T L G ++ + G+V
Sbjct: 273 TKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK 329
Query: 73 KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE 132
+ ++Y Q TV++ + + + ++ +V + + L
Sbjct: 330 QI-------LSYKPQRIFPNYDGTVQQYL--ENASKDALSTSSWFFEEVTKR----LNLH 376
Query: 133 DCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192
+ + + +SGGE ++L IA + L LD+P+S LD + V K +K +
Sbjct: 377 RLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431
Query: 193 A-HDGRTII 200
Sbjct: 432 TRERKAVTF 440
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 4e-21
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 14/176 (7%)
Query: 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVV-MTGNVLLNGKKRRLDYGGVAYVTQENI 90
+ IL V+G +G GK+T+L LAG + N V + +R + +E +
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE-L 81
Query: 91 MLGTLTVRETIAY----SAHLRLPSN--MNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
L + I Y S L+ N + + +E + + + ++
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI--- 138
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+SGG +RL +A +L + D+P+S LD + K ++ + + +I
Sbjct: 139 --LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-20
Identities = 41/199 (20%), Positives = 84/199 (42%), Gaps = 27/199 (13%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRRLDYGGVAYVTQENIML 92
+ ++GP+GSGK+TLL A++G L +GN+ +NG K R + +
Sbjct: 32 KVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGMEVRKIRNYIRYSTNLPE--AYE 85
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRGISGGE 151
+TV + + L+ ++ + E + + L E+ R + +S G+
Sbjct: 86 IGVTVNDIVYLYEELK---GLDRDLF----LEMLKALKLGEEILRRKLYK-----LSAGQ 133
Query: 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVF 211
+ +L + ++P+++ LDEP +D+A + + +K G+ I H+ +
Sbjct: 134 SVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHE-LDMLN 189
Query: 212 ALFD-DLFLLSGGETVYFG 229
+ + L G
Sbjct: 190 LYKEYKAYFLVGNRLQGPI 208
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 90.6 bits (226), Expect = 2e-20
Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 27/189 (14%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDY--- 79
L+ + + ++ ++G SGSGKSTL L R + G VL++G D
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQRF--YIPENGQVLIDGHDLALADPNWL 81
Query: 80 -GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-----ITEMGLED 133
V V Q+N++L ++ + I+ + M+ E++ + A I L +
Sbjct: 82 RRQVGVVLQDNVLLNR-SIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFI--SELRE 133
Query: 134 CADRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191
+ ++G +G SGG+++R++IA ++ P++L DE TS LD + +++ +
Sbjct: 134 GYNTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190
Query: 192 IAHDGRTII 200
I GRT+I
Sbjct: 191 ICK-GRTVI 198
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 29/198 (14%)
Query: 19 PTR---RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK- 74
P ++L GLT P ++ A++GP+GSGKST+ AL L G VLL+G+
Sbjct: 27 PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQ--PTGGKVLLDGEPL 83
Query: 75 RRLDY----GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA----- 125
+ D+ VA V QE ++ G + RE IAY L EEIT V E+
Sbjct: 84 VQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYG----LTRTPTMEEITAVAMESGAHDF 138
Query: 126 ITEMGLEDCADRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
I G D +G G SGG+++ +++A ++ +P+LL LD TS LD+
Sbjct: 139 I--SGFPQGYDTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 184 FVVKILKNIA-HDGRTII 200
V ++L RT++
Sbjct: 194 RVQRLLYESPEWASRTVL 211
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 3e-20
Identities = 55/200 (27%), Positives = 100/200 (50%), Gaps = 28/200 (14%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73
+F + ++L ++ A+P I+A GPSG GKST+ L R G + ++G+
Sbjct: 8 DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQ--PTAGEITIDGQ 64
Query: 74 KRRLDY------GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-- 125
+ + +V+Q++ ++ T+RE + Y L + +E++ V++ A
Sbjct: 65 PID-NISLENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFA 118
Query: 126 ---ITEMGLEDCADRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+ + D + +G RG+ SGG+++RL+IA L P++L LDE T+ LDS
Sbjct: 119 RSFV--ENMPDQLNTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 181 AAFFVVKILKNIAHDGRTII 200
+ V K L ++ GRT +
Sbjct: 174 SESMVQKALDSLMK-GRTTL 192
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 6e-20
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 26/218 (11%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG---KKR 75
R L + + A++G +GSGKST+ L R + G++ + G K
Sbjct: 31 TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFY-DA--EGDIKIGGKNVNKY 86
Query: 76 RLDY--GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MG 130
+ + V Q+ I+ T++ I Y +L + +EE+ + A + +
Sbjct: 87 NRNSIRSIIGIVPQDTILFNE-TIKYNILYG---KL--DATDEEVIKATKSAQLYDFIEA 140
Query: 131 LEDCADRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
L D ++GN +G+ SGGE++R++IA +L P+++ DE TS LDS + K
Sbjct: 141 LPKKWDTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197
Query: 189 LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
++++ RT+I H+ S+ A + + LL+ G+ V
Sbjct: 198 VEDLRK-NRTLIIIAHRLSTISSA--ESIILLNKGKIV 232
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 8e-19
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73
+F R L ++ P + LA++GPSG+GKST+L L R + +G + ++G+
Sbjct: 60 HFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFRFYD--ISSGCIRIDGQ 116
Query: 74 KRRLDY------GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDV-----I 122
+ V Q+ ++ T+ + I Y R+ N+E+ I
Sbjct: 117 DIS-QVTQASLRSHIGVVPQDTVLFND-TIADNIRYG---RV--TAGNDEVEAAAQAAGI 169
Query: 123 EEAITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+AI M + +G RG +SGGEK+R++IA IL P ++ LDE TS LD++
Sbjct: 170 HDAI--MAFPEGYRTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 181 AAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV 226
+ L + RT I H+ S+ V A D + ++ G V
Sbjct: 225 NERAIQASLAKVCA-NRTTIVVAHRLSTVVNA--DQILVIKDGCIV 267
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 29/225 (12%)
Query: 17 SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-R 75
S ++L GL + + +A++G SG GKST + L RL + G V ++G+ R
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYD--PLDGMVSIDGQDIR 455
Query: 76 RLDY----GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-----I 126
++ + V+QE ++ T T+ E I Y ++ +EI ++EA I
Sbjct: 456 TINVRYLREIIGVVSQEPVLFAT-TIAENIRYGR-----EDVTMDEIEKAVKEANAYDFI 509
Query: 127 TEMGLEDCADRLIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184
M L D L+G RG SGG+K+R++IA ++ P++L LDE TS LD+ +
Sbjct: 510 --MKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 185 VVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
V L GRT I H+ S+ A D + GG V G
Sbjct: 565 VQAALDKARE-GRTTIVIAHRLSTVRNA--DVIAGFDGGVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 4e-18
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 24/195 (12%)
Query: 19 PTR---RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK- 74
PTR +L GL+ + + LA++G SG GKST++ L R M G+V L+GK+
Sbjct: 1041 PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLERFYD--PMAGSVFLDGKEI 1097
Query: 75 RRLDYGG----VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE- 128
++L+ + V+QE I+ ++ E IAY + R+ S EEI +EA I +
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDC-SIAENIAYGDNSRVVSY---EEIVRAAKEANIHQF 1153
Query: 129 -MGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFV 185
L D + +G+ +G +SGG+K+R++IA ++ +P +L LDE TS LD+ + V
Sbjct: 1154 IDSLPDKYNTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210
Query: 186 VKILKNIAHDGRTII 200
+ L GRT I
Sbjct: 1211 QEALDKARE-GRTCI 1224
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 2e-18
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 26/177 (14%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDYGGVAYVTQENI---- 90
++++G SGSGKSTLL L G L + G V L GK+ + ++ + +
Sbjct: 32 FVSIIGASGSGKSTLLYIL-GLL--DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVF 88
Query: 91 ----MLGTLTVRETIAYSAHLRLP---SNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
++ LT E + +P +E + E ++E+GL D R
Sbjct: 89 QFHYLIPELTALENVI------VPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYE-- 140
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
+SGGE++R++IA + P LLF DEPT LDSA V+ I I G +I+
Sbjct: 141 ---LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 3e-18
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
L+G++ + ++GP+GSGKSTL++ + G L G V + N + L +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 81 GVAYVTQENIML-GTLTVRETIAYSAHLRLPSNMNN----------EEITDVIEEAITEM 129
G+ Q +TV E + S +N+ EE+ + + + +
Sbjct: 83 GIVRTFQ-TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
L DR G +SGG+ K + I ++T P+++ +DEP +G+ A + +
Sbjct: 142 KLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 190 KNIAHDGRTII 200
+ G T +
Sbjct: 197 LELKAKGITFL 207
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 8e-18
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRLDYGGVAYVTQENI----- 90
+++MGPSGSGKST+L+ + G L + G V ++ K LD + + ++ I
Sbjct: 34 VSIMGPSGSGKSTMLNII-GCL--DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90
Query: 91 ---MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG- 146
++ LT E + + M+ EE E + LE+ R H
Sbjct: 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE---RFAN--HKPNQ 145
Query: 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIHQ 205
+SGG+++R++IA + P ++ D+PT LDS ++++LK + DG+T++ H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 206 P 206
Sbjct: 206 I 206
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 6e-16
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 24/149 (16%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-------KRRLDYGGVAYVTQEN 89
++GP+G+GKS L+ +AG + G V LNG +RR G+ +V Q+
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR----GIGFVPQDY 79
Query: 90 IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149
+ L+V IAY LR N+ E + E ++G+ DR +SG
Sbjct: 80 ALFPHLSVYRNIAYG--LR---NVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSG 129
Query: 150 GEKKRLSIALEILTRPQLLFLDEPTSGLD 178
GE++R+++A ++ +P+LL LDEP S +D
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 2e-15
Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 36/184 (19%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
+ LLN + AR + GP+G GKSTL+ A+A
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR----------- 496
Query: 81 GVAYVTQENIMLGT-LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRL 138
YV + + +V + + + + I++ + E G ++
Sbjct: 497 -TVYVEHDIDGTHSDTSVLDFV----------FESGVGTKEAIKDKLIEFGFTDEMIAMP 545
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN------- 191
I +SGG K +L++A +L +L LDEPT+ LD+ ++V L
Sbjct: 546 ISA-----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIT 600
Query: 192 IAHD 195
I+HD
Sbjct: 601 ISHD 604
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 105 AHLRLPSNMNNEEITDVIEEAITEMGL--EDCADRLIGNWHWRGISGGEKKRLSIALEIL 162
L S IEE + +GL E + I +SGG+K +L +A
Sbjct: 863 MKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG-----LSGGQKVKLVLAAGTW 917
Query: 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKN-------IAHD 195
RP L+ LDEPT+ LD + + K LK I H
Sbjct: 918 QRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 17 SGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR 76
G ++ + + + +AV+GP+G+GKSTL++ L G L +G V + R
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENCR- 737
Query: 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT 119
+AY+ Q + +T + R + + E +
Sbjct: 738 -----IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMD 775
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 32/157 (20%)
Query: 36 ILAVMGPSGSGKSTLLDALAG---------RLSGNVVMTGNVLLNGKKRRLDYGGVAYVT 86
IL ++G SG GK+TLL LAG LSG + + N L ++R + Y+
Sbjct: 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER-----RLGYLV 86
Query: 87 QE-----NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
QE + LTV IAY + IE + G+ + A R
Sbjct: 87 QEGVLFPH-----LTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-- 136
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+SGG+++R ++A + P+L+ LDEP S LD
Sbjct: 137 ---HELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 4e-14
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY---- 79
L + + +A++G SGSGKST+ + R + G++L++G R +Y
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYD--IDEGHILMDGHDLR-EYTLAS 414
Query: 80 --GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-----ITEMGLE 132
VA V+Q + TV IAY+ + E+I + A I ++
Sbjct: 415 LRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQIEEAARMAYAMDFI--NKMD 467
Query: 133 DCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK 190
+ D +IG G +SGG+++R++IA +L +L LDE TS LD+ + + L
Sbjct: 468 NGLDTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 191 NIAHDGRTII 200
+ RT +
Sbjct: 525 ELQK-NRTSL 533
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 24/150 (16%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK--------KRRLDYGGVAYVTQE 88
+ ++GPSGSGK+T+L +AG G+V + GK KR V V Q
Sbjct: 44 VGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPPQKR-----NVGLVFQN 95
Query: 89 NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
+ +TV + +++ LR + +E+ + E + M LE A+R +S
Sbjct: 96 YALFQHMTVYDNVSFG--LRE-KRVPKDEMDARVRELLRFMRLESYANRFPHE-----LS 147
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
GG+++R+++A + RPQ+L DEP + +D
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 18 GPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL 77
G + L+ ++ + +A++G SGSGKST+ + R V +G++ L+G R
Sbjct: 353 GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYD--VDSGSICLDGHDVR- 408
Query: 78 DY------GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-----I 126
DY A V+Q + T+ IAY+A E+I +A I
Sbjct: 409 DYKLTNLRRHFALVSQNVHLFND-TIANNIAYAA----EGEYTREQIEQAARQAHAMEFI 463
Query: 127 TEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184
+ D +IG G +SGG+++R++IA +L +L LDE TS LD+ +
Sbjct: 464 --ENMPQGLDTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 185 VVKILKNIAHDGRTII 200
+ L + +T++
Sbjct: 519 IQAALDELQK-NKTVL 533
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 24/181 (13%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL--------SGNVVMTGNVL--LNGKKRRLDYGGVAYV 85
I V+G SG+GKSTL+ R G+V++ G L L+ + + +
Sbjct: 56 IYGVIGASGAGKSTLI-----RCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMI 110
Query: 86 TQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
Q +L + TV +A L L N +E+ + E ++ +GL D D N
Sbjct: 111 FQHFNLLSSRTVFGNVALP--LEL-DNTPKDEVKRRVTELLSLVGLGDKHDSYPSN---- 163
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIH 204
+SGG+K+R++IA + + P++L D+ TS LD A ++++LK+I G TI+ H
Sbjct: 164 -LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
Query: 205 Q 205
+
Sbjct: 223 E 223
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 9e-13
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 37/194 (19%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL----SGNVVMTGNVLLNGKKRRLDY 79
L G+ + ++ V+GPSGSGKST L L L G +++ G + L K L+
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDG-INLKAKDTNLNK 97
Query: 80 --GGVAYVTQ-----------ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI 126
V V Q NI L + VR E+ E +
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVR-------------KWPREKAEAKAMELL 144
Query: 127 TEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV 186
++GL+D A + +SGG+ +R++IA + P+++ DEPTS LD V+
Sbjct: 145 DKVGLKDKAHAYPDS-----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL 199
Query: 187 KILKNIAHDGRTII 200
++K +A++G T++
Sbjct: 200 SVMKQLANEGMTMV 213
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 53/208 (25%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLL-------DALAGRLS-GNVVMTGNVLLNGKKR 75
L G++ A +++++G SGSGKST L G + + +G+ +
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 76 RLDYGGVAYVTQ------------------ENIMLGTLTVRETIAYSAHLRLPSNMNNEE 117
D + + EN+M + V ++ +
Sbjct: 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-------------GLSKHD 128
Query: 118 ITDVIEEAITEMGLEDCAD-----RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172
+ + + ++G+++ A L SGG+++R+SIA + P +L DE
Sbjct: 129 ARERALKYLAKVGIDERAQGKYPVHL---------SGGQQQRVSIARALAMEPDVLLFDE 179
Query: 173 PTSGLDSAAAFFVVKILKNIAHDGRTII 200
PTS LD V++I++ +A +G+T++
Sbjct: 180 PTSALDPELVGEVLRIMQQLAEEGKTMV 207
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 59/246 (23%)
Query: 4 VWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVV 63
+ + S +L + E ++LAV G +G+GK++LL + G L
Sbjct: 34 TSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---P 90
Query: 64 MTGNVLLNGKKRRLDYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI 122
G + +G+ +++ +Q + IM G T++E I + + + VI
Sbjct: 91 SEGKIKHSGR--------ISFCSQNSWIMPG--TIKENI-------IGVSYDEYRYRSVI 133
Query: 123 EEAITEMGLEDCA-----------DR-LIGNWHWRGI--SGGEKKRLSIALEILTRPQLL 168
+ C D ++G GI SGG++ R+S+A + L
Sbjct: 134 ---------KACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLY 181
Query: 169 FLDEPTSGLDS--AAAFF---VVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223
LD P LD F V K++ N +T I + E D + +L G
Sbjct: 182 LLDSPFGYLDVLTEKEIFESCVCKLMAN-----KTRILVTSK--MEHLKKADKILILHEG 234
Query: 224 ETVYFG 229
+ ++G
Sbjct: 235 SSYFYG 240
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-12
Identities = 58/204 (28%), Positives = 87/204 (42%), Gaps = 51/204 (25%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVM------TGNVLLNGKK 74
+L + E +A +G SG GKSTL+ N++ +G +L++G
Sbjct: 354 APILKDINLSIEKGETVAFVGMSGGGKSTLI---------NLIPRFYDVTSGQILIDGHN 404
Query: 75 RRLDY------GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD--VIEEA- 125
+ D+ + V Q+NI+ TV+E I TD V+E A
Sbjct: 405 IK-DFLTGSLRNQIGLVQQDNILFSD-TVKENILL----------GRPTATDEEVVEAAK 452
Query: 126 -------ITEMGLEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSG 176
I M L D +G RG +SGG+K+RLSIA L P +L LDE TS
Sbjct: 453 MANAHDFI--MNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSA 507
Query: 177 LDSAAAFFVVKILKNIAHDGRTII 200
LD + + + L ++ RT +
Sbjct: 508 LDLESESIIQEALDVLSK-DRTTL 530
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 29/151 (19%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK--------KRRLDYGGVAYVTQE 88
++GP+G+GK+ L+ +AG +V +G +LL+GK K +A+V Q
Sbjct: 29 FVILGPTGAGKTLFLELIAGF---HVPDSGRILLDGKDVTDLSPEKH-----DIAFVYQ- 79
Query: 89 NIML-GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147
N L + V++ + + +R M + + + ++ +E DR +
Sbjct: 80 NYSLFPHMNVKKNLEFG--MR----MKKIKDPKRVLDTARDLKIEHLLDRNPLT-----L 128
Query: 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
SGGE++R+++A ++T P++L LDEP S LD
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-12
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 50/223 (22%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA 83
LNG+T ++AV+G G GKS+LL AL + + G+V + G VA
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS--------VA 69
Query: 84 YVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA------- 135
YV Q+ I ++RE I + + VI + CA
Sbjct: 70 YVPQQAWIQND--SLRENILFG------CQLEEPYYRSVI---------QACALLPDLEI 112
Query: 136 ----DR-LIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDS--AAAFFVV 186
DR IG +G+ SGG+K+R+S+A + + + D+P S +D+ F
Sbjct: 113 LPSGDRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 187 KILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
I +T I H D + ++SGG+ G
Sbjct: 170 VIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGGKISEMG 210
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 6e-12
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 58/226 (25%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA 83
L + E ++LAV G +G+GK++LL + G L G + +G+ ++
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGR--------IS 72
Query: 84 YVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA------- 135
+ +Q + IM G T++E I + + + VI + C
Sbjct: 73 FCSQFSWIMPG--TIKENIIFG------VSYDEYRYRSVI---------KACQLEEDISK 115
Query: 136 ----DR-LIGNWHWRGI--SGGEKKRLSIALEILTRPQLLFLDEPTSGLDS--AAAFF-- 184
D ++G GI SGG++ R+S+A + L LD P LD F
Sbjct: 116 FAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 185 -VVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
V K++ +T I + E D + +L G + ++G
Sbjct: 173 CVCKLMA-----NKTRILVTSK--MEHLKKADKILILHEGSSYFYG 211
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 37 LAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNG--------KKRRLDYGGVAYVT 86
++GPSG+GK+T + +AG S + + L+ + R + V
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR-----KIGMVF 88
Query: 87 QENIML-GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145
Q L LT E IA+ M+ EEI +EE + + + R
Sbjct: 89 Q-TWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----R 139
Query: 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
+SG +++R+++A ++ P LL LDEP S LD
Sbjct: 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 3e-11
Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
+ G+ +I+ ++G +G+GK+T L A+AG + G ++ G + N ++
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM--GLEDCADRL 138
G+A V + + LTV E + A+ R + E I +E I + L++ +L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEW-IFSLFPRLKERLKQL 136
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK----ILKNIAH 194
G +SGGE++ L+I +++RP+LL +DEP+ GL A +V +++ I
Sbjct: 137 GGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL----APILVSEVFEVIQKINQ 187
Query: 195 DGRTI 199
+G TI
Sbjct: 188 EGTTI 192
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 7e-11
Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 24/161 (14%)
Query: 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDY------GGVAY 84
+P ++AV+G +GSGKSTL++ L RL G V ++ R G ++
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMN-LIPRLID--PERGRVEVDELDVR-TVKLKDLRGHISA 421
Query: 85 VTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEA-ITE--MGLEDCADRLIGN 141
V QE + L + T++E + + + ++EI + + A I + + L + D +
Sbjct: 422 VPQETV-LFSGTIKENLKWGR-----EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER 475
Query: 142 WHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
G SGG+K+RLSIA ++ +P++L LD+ TS +D
Sbjct: 476 ---GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 52/176 (29%), Positives = 69/176 (39%), Gaps = 40/176 (22%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-------KRR 76
L G+ + A+MGP+G+GKSTL LAG V G +LL+G+ R
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD-PEYTVERGEILLDGENILELSPDER 77
Query: 77 LDYG------------GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE 124
G GV L A A +L + E +++
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIAN----FLRL-------ALQA--KLGREVGVAEFWTKVKK 124
Query: 125 AITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIA-LEILTRPQLLFLDEPTSGLD 178
A+ + E R + N G SGGEKKR I L +L P LDE SGLD
Sbjct: 125 ALELLDWDESYLSRYL-N---EGFSGGEKKRNEILQLLVL-EPTYAVLDETDSGLD 175
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 20/148 (13%)
Query: 37 LAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNG---KKRRLDYGGVAYVTQENIM 91
+A++GPSGSGKSTLL +AG + + + + K R V V Q N
Sbjct: 32 MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDR-----NVGLVFQ-NWA 85
Query: 92 L-GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150
L +TV + IA+ LR EEI + E + ++ +R +SGG
Sbjct: 86 LYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQ-----LSGG 137
Query: 151 EKKRLSIALEILTRPQLLFLDEPTSGLD 178
+++R++IA ++ P++L LDEP S LD
Sbjct: 138 QQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 60/178 (33%), Positives = 78/178 (43%), Gaps = 40/178 (22%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK-------KRR 76
L GL+ P + A+MGP+GSGKSTL LAGR V G V GK + R
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR-EDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 77 LDYG------------GVAYVTQENIMLGTLTVRETIAYSAH--LRLPSNMNNEEITDVI 122
G GV+ L T A +A R ++ + D++
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQF----FLQT-------ALNAVRSYRGQETLDRFDFQDLM 143
Query: 123 EEAITEMGL-EDCADRLIGNWHWRGISGGEKKRLSIA-LEILTRPQLLFLDEPTSGLD 178
EE I + + ED R + N G SGGEKKR I + +L P+L LDE SGLD
Sbjct: 144 EEKIALLKMPEDLLTRSV-N---VGFSGGEKKRNDILQMAVL-EPELCILDESDSGLD 196
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 41 GPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNG---KKRRLDYGGVAYVTQENIML-GT 94
GPSG GK+T L +AG + + G+ + K R ++ V Q + +
Sbjct: 44 GPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR-----NISMVFQ-SYAVWPH 97
Query: 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154
+TV E IA+ ++ +EI + A + +E+ +R +SGG+++R
Sbjct: 98 MTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQR 149
Query: 155 LSIALEILTRPQLLFLDEPTSGLD 178
+++A I+ P +L +DEP S LD
Sbjct: 150 VAVARAIVVEPDVLLMDEPLSNLD 173
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 20/144 (13%)
Query: 41 GPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNG---KKRRLDYGGVAYVTQENIML-GT 94
GPSG GK+T L LAG + + + +VL+N K R V V Q N L
Sbjct: 36 GPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYR-----EVGMVFQ-NYALYPH 89
Query: 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154
+TV E IA+ R ++ +E+ + E ++ +++ DR +SGG+++R
Sbjct: 90 MTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQR 141
Query: 155 LSIALEILTRPQLLFLDEPTSGLD 178
+++A ++ +P++L DEP S LD
Sbjct: 142 VALARALVKQPKVLLFDEPLSNLD 165
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 2e-09
Identities = 41/264 (15%), Positives = 74/264 (28%), Gaps = 80/264 (30%)
Query: 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD 78
P +L L PA+ + + G GSGK+ + +V L+ K +
Sbjct: 136 PYLKLRQALLE-LRPAKNVLIDGVLGSGKTWV--------------ALDVCLSYKVQCKM 180
Query: 79 YGGVAYVT--QEN------IMLGTLTVRETIAYSAHLRLPSN--MNNEEITDVIEEAITE 128
+ ++ N ML L + +++ SN + I + +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 129 MGLEDCADRLI------GNWHWRG-------------------ISGGEKKRLSI--ALEI 161
E+C L+ W +S +S+
Sbjct: 241 KPYENC---LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 162 LTRPQLL-----FLDEPTSGLDSAAAF---FVVKILKNIAHDG----------------R 197
LT ++ +LD L + I+ DG
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 198 TIISSI-HQPSSEVFALFDDLFLL 220
I SS+ +E +FD L +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 74/518 (14%), Positives = 147/518 (28%), Gaps = 164/518 (31%)
Query: 190 KNIAHDGRTIISS------IHQPSSE--VFALFDDLFLLSGGETVYFGEAKSAPTFFAEA 241
K++ ++I+S I + LF L E V F E
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-TLLSKQEEMVQ--------KFVEEV 86
Query: 242 GFPCPTRRNPSDHFLRCINSDFDVVTEVLMESQRICETQNPLGPIRNLPTSEIKGILIKK 301
LR IN F LM + E + P ++ T +
Sbjct: 87 --------------LR-INYKF------LMSPIKT-EQRQP-----SMMTRMYIEQRDRL 119
Query: 302 YRCSE-YATRARSRIQGISSI-EGLEFKRKN---------GSQAKWWKQLSILTQRS-SL 349
Y ++ +A SR+Q + + L R GS K W +++ S +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTW--VALDVCLSYKV 176
Query: 350 NMSRDFGYYWLRI-------AIYIILSVCVGSIFYDVGTNYTAIYARGSCAAFISGFMTF 402
DF +WL + + +L + Y + N+T+ + S +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQIDPNWTS-RSDHSSNIKLR----- 226
Query: 403 MSIGGFPSFIEEMRVFSRERLNGHYGVAVYILSNFLSSLPFLTAMSF-----ATT---SI 454
S E+R + + Y + +L N + + A + TT +
Sbjct: 227 -----IHSIQAELRRLLKSKP---YENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 455 TYYM---VKFRPGISHFIYAGLDLTSSIAVIESCMMMIASMVPNYLTGI------IIGAG 505
T ++ + H L +++ + +P + II
Sbjct: 278 TDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE- 335
Query: 506 YLGIMMMTSGYFRLIPDIPKVFWRYPIAYINYGAWALQGAYKNDLIGLEFD--------- 556
I D W + + L ++ L LE
Sbjct: 336 -------------SIRDGLAT-WDN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 557 AIDRDGPKLKGDVILKTMLGMNLDRSKWWDLA-----VVVAILISYRVIFFAILKFREKA 611
++ + ++ +++ W+D+ VVV L Y ++ EK
Sbjct: 379 SVFPPSAHIPTILL--SLI--------WFDVIKSDVMVVVNKLHKYSLV--------EK- 419
Query: 612 SPVFHSVYAKRTLHHLQKRPSFRKMPPFPSKR--HQVL 647
+ ++ + ++ H+ +
Sbjct: 420 ----QPKESTISIPSIY----LELKVKLENEYALHRSI 449
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 26/150 (17%)
Query: 41 GPSGSGKSTLLDALAG---------RLSGNVV--MTGNVLLNGKKRRLDYGGVAYVTQEN 89
GPSG GK+T L +AG + +V + + K R +A V Q +
Sbjct: 36 GPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR-----DIAMVFQ-S 89
Query: 90 IML-GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGIS 148
L +TV + IA+ LR + +EI + E +GL + +R +S
Sbjct: 90 YALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRE-----LS 141
Query: 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
GG+++R+++ I+ +PQ+ +DEP S LD
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 4e-09
Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 17/131 (12%)
Query: 111 SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI---SGGEKKRLSIALEI------ 161
S + E E + ++ R + SGGE+ L +A +
Sbjct: 210 SEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL 269
Query: 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL- 220
LL LDEPT LD ++ I++ +I H E+ D + +
Sbjct: 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRIS 327
Query: 221 -----SGGETV 226
S E V
Sbjct: 328 LENGSSKVEVV 338
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 56/192 (29%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVM------TGN 67
F + +L +T + +P + +A++GP+GSGK+T++ N++M G
Sbjct: 361 WFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIV---------NLLMRFYDVDRGQ 411
Query: 68 VLLNG----KKRRLDY-GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD-- 120
+L++G K +R + V Q+ +L + TV+E + Y N TD
Sbjct: 412 ILVDGIDIRKIKRSSLRSSIGIVLQDT-ILFSTTVKENLKY----------GNPGATDEE 460
Query: 121 VIEEAITEMGLEDCADRLI--------------GNWHWRGISGGEKKRLSIALEILTRPQ 166
+ E A +D I G +S G+++ L+I L P+
Sbjct: 461 IKEAAKLT-----HSDHFIKHLPEGYETVLTDNGE----DLSQGQRQLLAITRAFLANPK 511
Query: 167 LLFLDEPTSGLD 178
+L LDE TS +D
Sbjct: 512 ILILDEATSNVD 523
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 8e-08
Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 53/208 (25%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVM----TGNVLLNGKKRR 76
L ++ P + + ++G +GSGKSTLL A RL G + + ++ L ++
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRKA 95
Query: 77 LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM--NNEEITDVIEEAITEMGLEDC 134
+ Q+ + +S R N+ N I + E+GL
Sbjct: 96 F-----GVIPQKVFI-----------FSGTFR--KNLDPNAAHSDQEIWKVADEVGLRSV 137
Query: 135 ADRLIG-----------NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
++ G S G K+ + +A +L++ ++L LDEP++ LD
Sbjct: 138 IEQFPGKLDFVLVDGGCVL-----SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 184 FVVKILKN---------IAHDGRTIISS 202
+ + LK ++
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLEC 220
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 19/128 (14%)
Query: 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH--------WRGI- 147
VR + I + EA +E L L ++ I
Sbjct: 220 VRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTID 279
Query: 148 --SGGEKKRLSIAL-------EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
SGGE+ ++++L I R + + LDEPT LD + +I + + +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 199 IISSIHQP 206
II + H
Sbjct: 340 IIIT-HHR 346
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 148 SGGEKKRLSIALEI------LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTII 200
SGGE+ L +A + LL LDEPT LD ++ I++ +I
Sbjct: 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 28/150 (18%)
Query: 41 GPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNG---KKRRLDYGGVAYVTQENI----- 90
GPSG GKSTLL +AG ++ + G +N +R GV V Q +
Sbjct: 36 GPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAER-----GVGMVFQ-SYALYPH 89
Query: 91 MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG 150
+ +V E +++ L+L + E I + + + L DR + +SGG
Sbjct: 90 L----SVAENMSFG--LKL-AGAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGG 137
Query: 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+++R++I ++ P + LDEP S LD+A
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 148 SGGEKKRLSIAL------EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI-- 199
SGGE+ +SI+L R F+DE S LD+ + +LK + + I
Sbjct: 281 SGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVF 340
Query: 200 IS 201
I+
Sbjct: 341 IT 342
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-05
Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 19/185 (10%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL------------LNGKKRRLDYGGV 82
++ + GP+G GKST LA +L + + G+++ + + L + +
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAIT-EMGLEDCADRLIGN 141
+T ++ V + IA+ + ++ DV I E+ R
Sbjct: 63 TDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR 122
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIIS 201
+ + + E + F + TS L + I+KN+ + R I
Sbjct: 123 KKDEQMGERCLELVE-EFESKGIDERYFYN--TSHLQPTN---LNDIVKNLKTNPRFIFC 176
Query: 202 SIHQP 206
P
Sbjct: 177 MAGDP 181
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 7e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRL 58
I +MG SGSGKS + +A +L
Sbjct: 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 9e-05
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 33 PARILAVMGPSGSGKSTLLDALAGRL 58
+ VMG SGSGKS++ +A+A
Sbjct: 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 24/188 (12%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVV---------------MTGNVLLNGKKRRLD 78
IL + G GSGKST+ +ALA V + + + ++ R+
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI 68
Query: 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL 138
A V G + + + L + + + ++ + +R
Sbjct: 69 MQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALAR-PLHYIVLRT----TAAEAIERC 123
Query: 139 IGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198
+ L L + L SG D+ A + + +
Sbjct: 124 LDRGGDSLSDPLVVADLHSQFADLGAFEHHVLP--VSGKDTDQA--LQSAINALQSGRFR 179
Query: 199 IISSIHQP 206
I +S+
Sbjct: 180 IDASLEHH 187
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVV 63
+ I+ + GP G GK+ L RL G+ V
Sbjct: 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL 58
++ + GP KST+ L+ L
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKEL 25
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59
EP R + VMG SGSGK+T+ +A
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVADETG 54
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 39 VMGPSGSGKSTLLDALAGRLSGN---VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95
+G +GSGK+TL L N + + + +VT E IM
Sbjct: 19 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGY 78
Query: 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITE 128
I S + E + I E
Sbjct: 79 GPNGAIVESYDRLM---EKFNEYLNKILRLEKE 108
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 661 | |||
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.98 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.88 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.86 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.83 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.83 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.83 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.83 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.83 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.82 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.8 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.8 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.8 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.8 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.79 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.78 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.77 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.76 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.75 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.75 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.74 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.73 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.73 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.71 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.71 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.71 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.7 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.68 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.67 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.67 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.66 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.66 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.64 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.6 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.6 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.58 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.56 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.55 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.54 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.52 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.52 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.5 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.47 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.46 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.45 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.45 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.44 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.44 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.42 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.41 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.4 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.37 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.37 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.36 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.36 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.35 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.35 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.33 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.32 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.3 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.3 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.29 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.23 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.22 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.2 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.19 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.17 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.17 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.1 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.07 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.05 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.01 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.98 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.96 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.95 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.95 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.86 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.84 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.83 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.83 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.81 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.8 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.78 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.73 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.71 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.67 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.64 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.45 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.43 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.43 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.42 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.38 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.37 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.37 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.35 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.33 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.32 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.32 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.26 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.17 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.16 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.07 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.04 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.03 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.03 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.03 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.98 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.97 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.96 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.95 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.93 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.93 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.92 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.92 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.91 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.91 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.9 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.88 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.82 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.8 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.77 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.77 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.72 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.56 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.54 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.53 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.51 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.5 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.5 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.49 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.45 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.42 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.4 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.38 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.37 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.35 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.34 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.26 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.18 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.12 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.12 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.12 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.1 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.09 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.09 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.08 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.08 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.03 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.0 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.0 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.96 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.93 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.92 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.91 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.85 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.84 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.84 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.84 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.73 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.72 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.68 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.66 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.66 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.66 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.65 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.54 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.5 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.49 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.48 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.48 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.46 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.44 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.42 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.36 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.33 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.33 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.3 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.3 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.29 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 96.29 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.29 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.22 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.22 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.21 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.19 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.13 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.11 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.08 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.07 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.05 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.03 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.02 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.97 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.95 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.93 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.88 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.86 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.85 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.84 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.84 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.84 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.84 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.84 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.78 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.76 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.74 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.73 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.65 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.64 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.6 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.57 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.57 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.56 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.54 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.54 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.53 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.53 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.5 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.48 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.43 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.39 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.36 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.35 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.3 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.3 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.3 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.29 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.25 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.24 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.24 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.22 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.21 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.2 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.19 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.18 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.18 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.17 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.17 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.16 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.15 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.12 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.11 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.11 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.1 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.1 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.1 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.09 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.07 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.05 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.04 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.03 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.03 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.02 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.01 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.01 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.0 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.99 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 94.94 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.93 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.92 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.91 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.89 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.88 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.86 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.86 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.86 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.85 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.84 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.84 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.82 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.81 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.79 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.78 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.76 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.76 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.76 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.75 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.72 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.72 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.66 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.65 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.65 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.65 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.64 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.63 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.63 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.62 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.62 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.61 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.61 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.58 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.58 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.57 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.57 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.56 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.53 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.49 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.49 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.48 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.46 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.46 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.45 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.44 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.42 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.42 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.41 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.37 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.37 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.35 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.33 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.32 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.31 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.28 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.28 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.28 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.27 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.27 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.26 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.25 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.23 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.22 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.22 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 94.21 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.2 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.2 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.17 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.14 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.12 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.11 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.1 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.1 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.1 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.1 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.1 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.09 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.07 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.07 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.07 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.06 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.06 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.04 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.04 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.03 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.03 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.02 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.01 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.0 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.0 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.99 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.99 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.98 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.97 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 93.93 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.93 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.92 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.91 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.91 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.86 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.83 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.83 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.81 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.78 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.75 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.73 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.69 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.68 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.67 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.66 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.66 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.66 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.61 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.56 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.53 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.53 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.53 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.49 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.49 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 93.43 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.42 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 93.39 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.34 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 93.32 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.25 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.23 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.21 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.16 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.15 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.11 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.09 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 93.09 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 93.09 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 93.08 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.08 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.06 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.03 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 93.03 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 92.97 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 92.89 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.87 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.75 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 92.69 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 92.61 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 92.51 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.27 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.23 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.19 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.1 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 91.85 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 91.85 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.81 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 91.76 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 91.74 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 91.73 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 91.58 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 91.55 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.54 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 90.83 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.49 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 91.4 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 91.27 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 91.19 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 91.13 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 91.11 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 91.03 |
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=394.50 Aligned_cols=219 Identities=23% Similarity=0.344 Sum_probs=190.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++||++.++. ....+.+|+|||+++++||+++|+|||||||||||++|+|++++ .+|+|.++|++...
T Consensus 2 l~~~~l~~~y~~--~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 2 VKLKNVTKTYKM--GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEEE--TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHH
T ss_pred EEEEEEEEEeCC--CCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHH
Confidence 789999999863 11235699999999999999999999999999999999999988 49999999987531
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGer 152 (661)
.++.+|||+|++.+++.+||+||+.++...+.......++..+++.++++.+||.+. .++.++ +||||||
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~ 151 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----QLSGGQQ 151 (235)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----GSCHHHH
T ss_pred HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChh-----hCCHHHH
Confidence 123599999999999999999999998765422234566777889999999999875 477764 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. +.++||++++|++|+++..+++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcCh
Confidence 9999999999999999999999999999999999999999875 999999999973 5689999999999999999987
Q ss_pred CC
Q 045930 232 KS 233 (661)
Q Consensus 232 ~~ 233 (661)
++
T Consensus 230 ~~ 231 (235)
T 3tif_A 230 RG 231 (235)
T ss_dssp C-
T ss_pred hh
Confidence 65
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=415.49 Aligned_cols=219 Identities=27% Similarity=0.384 Sum_probs=196.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.++. .+..+.+|+||||++++||++||+||||||||||+|+|+|+.++. +|+|.++|++...
T Consensus 24 mi~v~~ls~~y~~--~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 24 MIKLSNITKVFHQ--GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CEEEEEEEEEEEC--SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred eEEEEeEEEEeCC--CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 4789999999864 112357999999999999999999999999999999999999884 9999999987531
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.+|||+|++.+++.+||+||+.+++..+ ..++++.+++++++++.+||.+.+|++++ +|||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqkQ 170 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQ 170 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TSCHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHH
Confidence 1467999999999999999999999987754 35677788899999999999999998875 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++ .++.++||+|++|++|++++.|+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 99999999996 5788999999999999999999876
Q ss_pred Ch
Q 045930 233 SA 234 (661)
Q Consensus 233 ~~ 234 (661)
++
T Consensus 250 ev 251 (366)
T 3tui_C 250 EV 251 (366)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=402.25 Aligned_cols=217 Identities=27% Similarity=0.407 Sum_probs=192.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. .+.+|+|||+++++||+++|+||||||||||+|+|+|++++ .+|+|.++|++...
T Consensus 7 ~l~i~~ls~~y~~-----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 7 ILKVEELNYNYSD-----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEECTT-----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCCSHHH
T ss_pred EEEEEEEEEEECC-----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEECCccccc
Confidence 3899999998852 24599999999999999999999999999999999999988 49999999987521
Q ss_pred ---ccCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ---DYGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ---~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.+|||+|++ ..+..+||+||+.++.... ..+.++.+++++++++.+||.+..++.++ +|||||||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQ 150 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKK 150 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHH
Confidence 245799999996 3444789999999987653 35677778899999999999999998875 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||+||+||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++ .++.++||+|++|++|++++.|+++
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~ 229 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPK 229 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998 5699999999997 4788999999999999999999987
Q ss_pred Chh
Q 045930 233 SAP 235 (661)
Q Consensus 233 ~~~ 235 (661)
++.
T Consensus 230 ~~~ 232 (275)
T 3gfo_A 230 EVF 232 (275)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-48 Score=413.89 Aligned_cols=215 Identities=25% Similarity=0.388 Sum_probs=193.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec----c-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR----R- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~----~- 76 (661)
.|+++||++.+. ++.+|+|||+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++. .
T Consensus 4 ~l~i~~ls~~y~------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQ------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 489999999884 257999999999999999999999999999999999999884 99999999864 1
Q ss_pred --cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 77 --LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 77 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
..++.+|||+|+..++|.+||+||+.|+...+ ...+++.+++++++++.+||++.+|++++ +||||||||
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QR 146 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELSGGQQQR 146 (359)
T ss_dssp CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHHHHHH
T ss_pred cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 12467999999999999999999999986543 34456677889999999999999999875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|++|||||||+|||+..+.++.+.|+++.+ .|+|||++|||. .++..+||||++|++|+++..|++++
T Consensus 147 ValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~e 225 (359)
T 3fvq_A 147 AALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHE 225 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999998888754 599999999996 68999999999999999999999865
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
+
T Consensus 226 l 226 (359)
T 3fvq_A 226 L 226 (359)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-48 Score=413.99 Aligned_cols=215 Identities=25% Similarity=0.394 Sum_probs=196.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++||++.+. .+.+|+|||+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 3 ~l~~~~l~~~yg------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEEC------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHH
Confidence 589999999884 257999999999999999999999999999999999999884 999999999753 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
.+.+|||+|++.++|.+||+||+.|+.+.+ ..++++.+++++++++.+||.+..|++++ +|||||||||+||
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQRVaiA 145 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIG 145 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHHHHHH
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHHHHHH
Confidence 467999999999999999999999998764 35677888899999999999999998875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+..+.++.+.|+++.++ |+|+|++|||+ .++..+||+|++|++|+++..|+++++
T Consensus 146 rAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l 221 (381)
T 3rlf_A 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLEL 221 (381)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence 9999999999999999999999999999999999775 99999999996 689999999999999999999998764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-48 Score=396.80 Aligned_cols=214 Identities=25% Similarity=0.393 Sum_probs=189.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---c-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---L- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~- 77 (661)
.|+++|+++.++ ++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++.. .
T Consensus 24 ~l~i~~l~~~y~------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSFG------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCC
T ss_pred eEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCcccc
Confidence 388999999884 256999999999999999999999999999999999999884 899999998752 1
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++||+|++.+++.+||+||+.+.. ..+ ..+.++.+++++++++.+||.+..|+.++ +|||||||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQ 166 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLSGGQAQ 166 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHH
Confidence 1346999999999999999999999964 332 23455566789999999999998888875 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++..+||++++|++|++++.|++++
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPED 245 (263)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999987899999999996 57888999999999999999998654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=385.64 Aligned_cols=211 Identities=29% Similarity=0.369 Sum_probs=187.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD--- 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~--- 78 (661)
.|+++|+++.++. +.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y~~------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVIRG------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHH
T ss_pred EEEEEeEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 3789999998742 56999999999999999999999999999999999999884 89999999875321
Q ss_pred ------cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 79 ------YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 79 ------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
++.++||+|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ +||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~ 146 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQ 146 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHH
T ss_pred HHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 256999999999999999999999976543 23445566789999999999998888875 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+ +.+ ++||++++|++|++++.|+.
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 147 QRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999999999999999999987799999999996 455 89999999999999999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=396.75 Aligned_cols=214 Identities=22% Similarity=0.364 Sum_probs=189.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+. ++.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y~------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 6 KLHVIDLHKRYG------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDK 76 (262)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECT
T ss_pred eEEEeeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccc
Confidence 489999999884 256999999999999999999999999999999999999884 8999999987530
Q ss_pred --------------ccCeEEEEecCCCCCCCCCHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccC
Q 045930 78 --------------DYGGVAYVTQENIMLGTLTVRETIAYSA-HLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGN 141 (661)
Q Consensus 78 --------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~ 141 (661)
.++.+|||+|++.+++.+||+||+.+.. ..+ ..+.++.+++++++++.+||.+. .++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~- 152 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPV- 152 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGG-
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcc-
Confidence 1346999999999999999999999864 332 23455567789999999999998 888875
Q ss_pred ccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 142 ~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ +++..+||++++|+
T Consensus 153 ----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~ 227 (262)
T 1b0u_A 153 ----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLH 227 (262)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEE
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999987899999999996 57888999999999
Q ss_pred CCeEEEecCCCC
Q 045930 222 GGETVYFGEAKS 233 (661)
Q Consensus 222 ~G~~v~~G~~~~ 233 (661)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (262)
T 1b0u_A 228 QGKIEEEGDPEQ 239 (262)
T ss_dssp TTEEEEEECHHH
T ss_pred CCEEEEeCCHHH
Confidence 999999998654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=391.63 Aligned_cols=215 Identities=28% Similarity=0.386 Sum_probs=190.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 15 ~l~i~~l~~~y~------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 15 AVVVKDLRKRIG------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHE 85 (256)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHH
T ss_pred eEEEEEEEEEEC------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHH
Confidence 478999999874 256999999999999999999999999999999999999884 8999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.++ +|||||||||+|
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~l 157 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLI 157 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHH
Confidence 2457999999999999999999999976542 23445556788999999999999888875 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++++.|++++.
T Consensus 158 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 158 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999987899999999996 578889999999999999999986554
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=392.91 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=189.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++ ++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 7 ~l~i~~l~~~y~------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 7 ILRTENIVKYFG------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77 (257)
T ss_dssp EEEEEEEEEEET------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred EEEEeeeEEEEC------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 378999999884 256999999999999999999999999999999999999884 8999999987532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhc-CCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCcccc
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHL-RLPS---------NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 145 (661)
.++.++||+|++.+++.+||+||+.+.... +... ....++.+++++++++.+||++..++.++
T Consensus 78 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 152 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG----- 152 (257)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred HHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch-----
Confidence 134699999999999999999999987543 1110 02234456788999999999999998875
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ +++..+||++++|++|++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 5999999999999999999999999999999999999999999999988899999999997 478889999999999999
Q ss_pred EEecCCCC
Q 045930 226 VYFGEAKS 233 (661)
Q Consensus 226 v~~G~~~~ 233 (661)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99998765
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-47 Score=405.00 Aligned_cols=216 Identities=25% Similarity=0.462 Sum_probs=194.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.++ + ++.+|+|||+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 14 ~l~~~~l~~~y~--g---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 14 TIEFVGVEKIYP--G---GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEECCT--T---STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred eEEEEEEEEEEc--C---CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChh
Confidence 578999998772 1 256999999999999999999999999999999999999884 999999998753 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|++++ +|||||||||+||
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRvalA 157 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQQRVALA 157 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHH
Confidence 467999999999999999999999987653 34566777889999999999999999875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|||++|||+ .++..+||++++|++|+++..|+++++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999765 99999999996 688999999999999999999987654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-47 Score=386.07 Aligned_cols=213 Identities=26% Similarity=0.419 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. +.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 6 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 6 VLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred eEEEEeEEEEECC------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHH
Confidence 4789999998842 56999999999999999999999999999999999999884 9999999987532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-LEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.++|++|++.+++.+||+||+.+..... ...++.+++++++++.++ |.+..++.++ +||||||||
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LSgGq~qr 147 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQM 147 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChh-----hCCHHHHHH
Confidence 1345999999999999999999999864211 123445677889999995 9888888775 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++.++||++++|++|++++.|++++
T Consensus 148 v~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999987899999999996 57889999999999999999987654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=404.23 Aligned_cols=215 Identities=24% Similarity=0.375 Sum_probs=194.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++..
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGT
T ss_pred EEEEEeEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECcccccc
Confidence 489999999884 256999999999999999999999999999999999999884 999999997642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
..++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.+||++..+++++ +||||||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~ 145 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQR 145 (372)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHH
T ss_pred ccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cCCHHHH
Confidence 12467999999999999999999999987654 34566777889999999999999998875 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||+ .++..+||++++|++|+++..|++
T Consensus 146 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~ 224 (372)
T 1g29_1 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSP 224 (372)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 99999999996 688999999999999999999998
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
+++
T Consensus 225 ~~l 227 (372)
T 1g29_1 225 DEV 227 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=404.04 Aligned_cols=215 Identities=28% Similarity=0.424 Sum_probs=194.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFG------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEESS------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEEEC------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHh
Confidence 489999999874 256999999999999999999999999999999999999884 999999998753 22
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.+||++..+++++ +|||||||||+||
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalA 145 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQRVAIA 145 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHH
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987653 34566777889999999999999998875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 146 RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEV 221 (362)
T ss_dssp HHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999765 99999999996 688999999999999999999998664
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=404.28 Aligned_cols=215 Identities=23% Similarity=0.410 Sum_probs=192.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFG------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChh
Confidence 489999999884 256999999999999999999999999999999999999884 999999998753 22
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+++++||+||+.|..+.+ ..++++.+++++++++.+||++..+++++ +|||||||||+||
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QRvalA 145 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQRVALA 145 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999986543 23445556789999999999999999875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999765 99999999996 678899999999999999999998765
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=403.87 Aligned_cols=215 Identities=25% Similarity=0.413 Sum_probs=193.3
Q ss_pred eEEEEEEEEEeecCCcccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRR--LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--- 76 (661)
.|+++|+++.++. +. +|+|||+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++..
T Consensus 3 ~l~i~~l~~~y~~------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEGG------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETT
T ss_pred EEEEEeEEEEECC------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccc
Confidence 4899999998842 45 999999999999999999999999999999999999884 999999998642
Q ss_pred -----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 77 -----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 77 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
..++.+|||+|+..+++.+||+||+.|+.+.+ ..++++.+++++++++.+||++..|++++ +|||||
T Consensus 74 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~LSGGq 145 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQ 145 (353)
T ss_dssp EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHH
T ss_pred cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHH
Confidence 12467999999999999999999999986543 34566777889999999999999999875 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|||++|||+ .++..+||++++|++|+++..|+
T Consensus 146 ~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGK 224 (353)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999765 99999999996 68899999999999999999998
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
++++
T Consensus 225 ~~~l 228 (353)
T 1oxx_K 225 PEDL 228 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=388.44 Aligned_cols=213 Identities=25% Similarity=0.345 Sum_probs=188.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.+. ++.+|+|||+++++||+++|+||||||||||+|+|+|++++. +|+|.++|++...
T Consensus 11 ~l~~~~l~~~~~------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 11 LLEASHLHYHVQ------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPK 81 (266)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHH
T ss_pred eEEEEeEEEEeC------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHH
Confidence 488999999874 267999999999999999999999999999999999999884 8999999997532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.++.++|++|++.+++.+||+||+.++.... ..++.+++++++++.+||.+..++.++ +|||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QRv~ 151 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQRVQ 151 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHH
Confidence 1356999999999888999999999876432 123345678999999999999988875 59999999999
Q ss_pred HHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 157 IALEILT------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 157 Ia~aL~~------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||+ +++.++||++++|++|++++.|
T Consensus 152 iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 9999999 99999999999999999999999999999876 57999999996 5788999999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
++++.
T Consensus 231 ~~~~~ 235 (266)
T 4g1u_C 231 TPEEV 235 (266)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 97654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=403.72 Aligned_cols=215 Identities=23% Similarity=0.373 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.|+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++.. ..
T Consensus 11 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRFG------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEEC------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChh
Confidence 389999999884 256999999999999999999999999999999999999884 999999998753 22
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|+..+++++||+||+.|+.+.+ ..++++.+++++++++.+||++..+++++ +|||||||||+||
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalA 153 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVA 153 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999975432 34566777889999999999999999875 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|||||||+|||+..+..+.+.|+++.++ |.|+|++|||+ .++..+||++++|++|+++..|+++++
T Consensus 154 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l 229 (372)
T 1v43_A 154 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999775 99999999996 688899999999999999999998765
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-46 Score=379.12 Aligned_cols=209 Identities=25% Similarity=0.396 Sum_probs=184.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
++++|+++.++. +|+|+|+++++ |+++|+||||||||||||+|+|++++. +|+|.++|++.. ..+
T Consensus 2 l~~~~l~~~y~~--------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLGN--------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEETT--------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEeCC--------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhh
Confidence 688999998731 49999999999 999999999999999999999999884 899999998753 224
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.+|||+|++.+++.+||+||+.+....+ .....+++++++++.+||.+..++.++ +|||||||||+||+
T Consensus 70 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAr 139 (240)
T 2onk_A 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALAR 139 (240)
T ss_dssp SCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHH
T ss_pred CcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHH
Confidence 67999999999999999999999864321 122235778999999999998888875 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++ .++..+||++++|++|++++.|++++.
T Consensus 140 al~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999765 99999999996 578899999999999999999986543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-46 Score=383.84 Aligned_cols=220 Identities=26% Similarity=0.390 Sum_probs=187.4
Q ss_pred CeEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cc
Q 045930 1 MYLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LD 78 (661)
Q Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~ 78 (661)
|.++++|+++.++. +....+.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++.. ..
T Consensus 1 ~~l~~~~l~~~y~~-~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~ 76 (266)
T 2yz2_A 1 MRIEVVNVSHIFHR-GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEI 76 (266)
T ss_dssp CCEEEEEEEEEEST-TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHH
T ss_pred CEEEEEEEEEEecC-CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHh
Confidence 45899999998851 0000156999999999999999999999999999999999999884 999999998753 12
Q ss_pred cCeEEEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccccccCHHHHHHH
Q 045930 79 YGGVAYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE--DCADRLIGNWHWRGISGGEKKRL 155 (661)
Q Consensus 79 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSgGerqRv 155 (661)
++.+|||+|++ ..++.+||+||+.+..... .+.++.+++++++++.+||. +..++.++ +|||||||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq~qRv 147 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGEKRRV 147 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHHHHHH
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHHHHHH
Confidence 45799999995 5667899999999865321 12223346789999999999 88888875 5999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++ .++..+||++++|++|++++.|++++.
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 225 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987799999999997 467889999999999999999986554
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-46 Score=396.23 Aligned_cols=210 Identities=22% Similarity=0.416 Sum_probs=187.7
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
|+++|+++.++ ++ +|+|+|+++++||+++|+||||||||||||+|+|+.++. +|+|.++|++... .+
T Consensus 2 l~~~~l~~~y~------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRKWK------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEECS------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEEEC------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhh
Confidence 78999998874 25 999999999999999999999999999999999999884 9999999987531 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.+|||+|+..+++.+||+||+.|+...+. .+++ ++++++++.+||++..|++++ +|||||||||+|||
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalAr 140 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALAR 140 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHH
Confidence 579999999999999999999999876431 1122 678999999999999999875 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++|||+ .++..++|++++|++|+++..|++++.
T Consensus 141 aL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEI 215 (348)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999765 99999999996 678999999999999999999987654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=378.46 Aligned_cols=216 Identities=24% Similarity=0.314 Sum_probs=180.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCCceeeEEEECCeeccc--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR--LSGNVVMTGNVLLNGKKRRL-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~--~~~~~~~~G~i~~~g~~~~~-- 77 (661)
.++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+|+|+|+ +++ .+|+|.++|++...
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASID------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEEC------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCC
Confidence 388999999884 25699999999999999999999999999999999998 555 58999999987531
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-CccccccccCccccc-cCHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-EDCADRLIGNWHWRG-ISGGE 151 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~d~~vg~~~~~~-LSgGe 151 (661)
.+..++|++|++.+++.+||+||+.+............++..++++++++.+|| .+..|+.++ . |||||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 148 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGFSGGE 148 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC----H
T ss_pred HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCCHHH
Confidence 124589999999999999999999986532101112334556778999999999 578888774 5 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~~G~ 230 (661)
||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+ ||++++|++|++++.|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeC
Confidence 9999999999999999999999999999999999999999977799999999997 467777 59999999999999998
Q ss_pred CC
Q 045930 231 AK 232 (661)
Q Consensus 231 ~~ 232 (661)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=384.64 Aligned_cols=217 Identities=24% Similarity=0.352 Sum_probs=183.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--c--
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--L-- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~-- 77 (661)
.|+++|+++.++ ++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++.. .
T Consensus 21 ~l~~~~l~~~y~------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 21 LIQLDQIGRMKQ------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CC
T ss_pred eEEEEeEEEEEC------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCC
Confidence 478999999874 256999999999999999999999999999999999999884 899999997643 1
Q ss_pred ---ccCeEEEEecCCCC--CCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 ---DYGGVAYVTQENIM--LGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l--~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++||+|++.+ .+.+||+||+.++...... .....++.+++++++++.+||++..++.++ +|||||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq 166 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGE 166 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHH
Confidence 14579999999754 3457999999875321100 011123445778999999999999888875 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE--EEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI--ISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tv--i~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++ .++.++||++++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998779999 9999996 5778899999999999999999
Q ss_pred CCCC
Q 045930 230 EAKS 233 (661)
Q Consensus 230 ~~~~ 233 (661)
++++
T Consensus 246 ~~~~ 249 (279)
T 2ihy_A 246 AVED 249 (279)
T ss_dssp EHHH
T ss_pred CHHH
Confidence 7654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=371.64 Aligned_cols=209 Identities=28% Similarity=0.375 Sum_probs=181.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++. ++.+|+|+|+++++||+++|+|||||||||||++|+|++++. +|+|.+ ++.
T Consensus 4 ~l~i~~l~~~y~~-----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~ 67 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQS 67 (253)
T ss_dssp EEEEEEEEEEETT-----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSC
T ss_pred eEEEeeEEEEeCC-----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------ecc
Confidence 3889999998741 256999999999999999999999999999999999999884 899982 356
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
++||+|++.+++.+||+||+.+....... .....++.+++++++++.+||.+..++.++ +|||||||||+||+|
T Consensus 68 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARA 142 (253)
T ss_dssp EEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHH
T ss_pred EEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHH
Confidence 99999999999999999999987532110 001123445778999999999998888775 599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ +++..+||++++|++|+ ++.|++++
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHH
Confidence 99999999999999999999999999999999877 99999999996 57889999999999999 99887654
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=373.23 Aligned_cols=220 Identities=29% Similarity=0.363 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCCceeeEEEECCeecccc-
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRLD- 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~~~~G~i~~~g~~~~~~- 78 (661)
.|+++|+++.++ ++.+|+|||+++++||+++|+||||||||||||+|+|+. ++ .+|+|.++|++....
T Consensus 20 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 20 MLSIKDLHVSVE------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLALS 90 (267)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGSC
T ss_pred eEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcCC
Confidence 378999999874 257999999999999999999999999999999999984 34 589999999875311
Q ss_pred -----cCeEEEEecCCCCCCCCCHHHHHHHHHh-cC---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccC
Q 045930 79 -----YGGVAYVTQENIMLGTLTVRETIAYSAH-LR---LPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGIS 148 (661)
Q Consensus 79 -----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-l~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LS 148 (661)
++.++|++|++.+++.+||.|++.+... .+ .....+.++.+++++++++.+||. +..++.++ .+||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LS 166 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFS 166 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCC
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCC
Confidence 2349999999999999999999987542 11 011234455567899999999996 57777764 1499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEE
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL-FDDLFLLSGGETVY 227 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~-~D~v~lL~~G~~v~ 227 (661)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++ .++..+ ||++++|++|++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999977799999999996 456665 89999999999999
Q ss_pred ecCCCChh
Q 045930 228 FGEAKSAP 235 (661)
Q Consensus 228 ~G~~~~~~ 235 (661)
.|++++..
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99987654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=369.52 Aligned_cols=203 Identities=29% Similarity=0.424 Sum_probs=179.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++|+++. .+|+|+|+++++||+++|+||||||||||||+|+|++++ . |+|.++|++...
T Consensus 5 l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 5 MQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 788888863 489999999999999999999999999999999999987 5 999999987531
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.++|++|++.+++.+||+||+.+... + ... +++++++++.+||++..++.++ +|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~l 137 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRL 137 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHH
Confidence 13569999999999999999999987521 1 111 4568899999999998888775 599999999999
Q ss_pred HHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 158 ALEILTRPQ-------LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 158 a~aL~~~P~-------lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|+||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++ ..+..+||++++|++|++++.|+
T Consensus 138 AraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 138 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999 9999999999999999999999999987799999999996 57789999999999999999987
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 217 ~~~ 219 (249)
T 2qi9_C 217 REE 219 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=366.53 Aligned_cols=212 Identities=25% Similarity=0.411 Sum_probs=177.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|||+++++||+++|+|||||||||||++|+|++++. +|+|.++|++...
T Consensus 7 ~~~~~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKP----DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESST----TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCC----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 4789999998731 1356999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG------NWHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSgG 150 (661)
.++.++||+|++.+++ .||+||+.+... ..+ +++++++++.+++.+..++.+. +.....||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 149 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG 149 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence 1356999999998886 599999987521 112 2356778888888776655431 1124579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++. .+ +.||++++|++|++++.|+
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGK 226 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999995 5999999999974 44 4599999999999999998
Q ss_pred CCC
Q 045930 231 AKS 233 (661)
Q Consensus 231 ~~~ 233 (661)
+++
T Consensus 227 ~~~ 229 (247)
T 2ff7_A 227 HKE 229 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=374.83 Aligned_cols=215 Identities=28% Similarity=0.415 Sum_probs=177.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.++. +..+.+|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++|++...
T Consensus 16 ~l~~~~l~~~y~~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 16 LVKFQDVSFAYPN---HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CEEEEEEEECCTT---CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEeCC---CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHH
Confidence 3789999987742 11256999999999999999999999999999999999999884 8999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEE-----ITDVIEEAITEM--GLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++ .||+||+.+..... ...++ ....++++++.+ ||.+..++.++ +|||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~-----~LSg 159 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGN-----QLSG 159 (271)
T ss_dssp HHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGT-----TSCH
T ss_pred HHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcC-----CCCH
Confidence 1356999999998887 59999999863211 11111 122356778887 78777777664 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++ ..+. .||++++|++|++++.
T Consensus 160 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQ 237 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999975 489999999996 3454 5999999999999999
Q ss_pred cCCCCh
Q 045930 229 GEAKSA 234 (661)
Q Consensus 229 G~~~~~ 234 (661)
|++++.
T Consensus 238 g~~~~l 243 (271)
T 2ixe_A 238 GTHLQL 243 (271)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 986543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-44 Score=375.37 Aligned_cols=212 Identities=28% Similarity=0.421 Sum_probs=176.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++|+++.++. .+.+|+||||++++||++||+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 53 ~i~~~~vs~~y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~ 124 (306)
T 3nh6_A 53 RIEFENVHFSYAD-----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124 (306)
T ss_dssp CEEEEEEEEESST-----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHH
T ss_pred eEEEEEEEEEcCC-----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHH
Confidence 4899999998852 356999999999999999999999999999999999999884 9999999997542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSg 149 (661)
.++.+|||+|++.+|+ .||+||+.++... .+. +.++++++..++.+. .++.+|. ...+|||
T Consensus 125 ~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSG 193 (306)
T 3nh6_A 125 SLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSG 193 (306)
T ss_dssp HHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCH
T ss_pred HHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCH
Confidence 2457999999999885 5999999986321 222 235556666666543 3445543 3457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+|||||+.+|+||||||||+|||+.+...+++.|+++.+ ++|||+++|+++ .+.. ||+|++|++|++++.|
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 799999999964 5554 9999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 271 ~~~el~ 276 (306)
T 3nh6_A 271 RHEALL 276 (306)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 876543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=359.92 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=172.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++ + ++|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|++....++.
T Consensus 10 ~l~~~~ls~~y~------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 79 (214)
T 1sgw_A 10 KLEIRDLSVGYD------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79 (214)
T ss_dssp EEEEEEEEEESS------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGGG
T ss_pred eEEEEEEEEEeC------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcCc
Confidence 478999998773 2 6999999999999999999999999999999999999884 89999999875323467
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++||+|++.+++.+||+||+.+....+. . ..+ +++++++++.+||++. ++.++ +|||||||||+||+||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~---~-~~~-~~~~~~~l~~~gl~~~-~~~~~-----~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYG---V-KVN-KNEIMDALESVEVLDL-KKKLG-----ELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTT---C-CCC-HHHHHHHHHHTTCCCT-TSBGG-----GSCHHHHHHHHHHHHT
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcC---C-chH-HHHHHHHHHHcCCCcC-CCChh-----hCCHHHHHHHHHHHHH
Confidence 9999999999999999999998765431 1 112 4568899999999887 77664 6999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++..++|++++++
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS 207 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC
Confidence 9999999999999999999999999999999877999999999974 6788888877554
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=366.53 Aligned_cols=212 Identities=25% Similarity=0.405 Sum_probs=177.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----L 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~ 77 (661)
++++|+++.++. ++.+|+|||+++++||+++|+|||||||||||++|+|++++. +|+|.++|++.. .
T Consensus 2 l~~~~l~~~y~~-----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEEeCC-----CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHH
Confidence 789999987731 356999999999999999999999999999999999999874 899999998752 1
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccccccCHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG------NWHWRGISGGE 151 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg------~~~~~~LSgGe 151 (661)
.++.++||+|++.+++ .||+||+.+... + ... +++++++++.+++.+..++... +.....|||||
T Consensus 74 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 74 WRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 2457999999998887 499999987521 1 122 2357788999999887765431 12346799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||++ ..+ ..||++++|++|++++.|++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~ 221 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKH 221 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999997 699999999996 345 56999999999999988876
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
++.
T Consensus 222 ~~~ 224 (243)
T 1mv5_A 222 NEL 224 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=362.06 Aligned_cols=207 Identities=21% Similarity=0.334 Sum_probs=179.2
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccC
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYG 80 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~ 80 (661)
|+++|+++.++.. +..+.+|+|+|++++ ||+++|+||||||||||||+|+|++ |. +|+|.++|++.. ..++
T Consensus 2 l~~~~l~~~y~~~--~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGK--GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEEE--TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEeCCC--CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhh
Confidence 7899999988520 012569999999999 9999999999999999999999999 74 999999998742 1245
Q ss_pred eEE-EEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHH
Q 045930 81 GVA-YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 81 ~i~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
.++ |++|++.+ .+||+||+.+...+. .. .+++++++++.+||. +..++.++ +|||||||||+||
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkqRv~lA 140 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQSVLVRTS 140 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHHHHHHH
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHHHHHHHH
Confidence 799 99999877 889999999876542 11 135688999999998 88888775 5999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC-eEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFD-DLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D-~v~lL~~G~~v~~G~~~~~ 234 (661)
+||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||++ .++.++|| ++++|++|++++.|++++.
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp HHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999854 999999996 56788999 9999999999999987654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-43 Score=359.10 Aligned_cols=212 Identities=26% Similarity=0.426 Sum_probs=173.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ...+.+|+|||+++++||+++|+|||||||||||++|+|++++ +|+|.++|++...
T Consensus 17 ~l~i~~l~~~y~~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 17 NIEFSDVNFSYPK---QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CEEEEEEEECCTT---CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEeCC---CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHH
Confidence 4789999998742 1124699999999999999999999999999999999999864 7999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++ .||+||+.++.. ... ++++.++++.+++.+. .|+.++. .+..|||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSg 158 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSG 158 (260)
T ss_dssp HHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCH
T ss_pred HHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCH
Confidence 2467999999998886 599999987421 112 2345667777776543 3333332 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |+|||++||++. .+ ..||++++|++|++++.|
T Consensus 159 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKG 235 (260)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999965 899999999974 44 469999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
++++.
T Consensus 236 ~~~~l 240 (260)
T 2ghi_A 236 THKDL 240 (260)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 86543
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=348.99 Aligned_cols=202 Identities=22% Similarity=0.375 Sum_probs=165.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.++. .++++|+|||+++++||+++|+||||||||||||+|+|++++. +|+|.++| .
T Consensus 6 ~l~~~~l~~~y~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~ 70 (229)
T 2pze_A 6 EVVMENVTAFWEE----GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------R 70 (229)
T ss_dssp EEEEEEEEECSST----TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------C
T ss_pred eEEEEEEEEEeCC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------E
Confidence 4789999987742 1357999999999999999999999999999999999999884 99999998 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCccccccCHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR-------LIGNWHWRGISGGEKKR 154 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~-------~vg~~~~~~LSgGerqR 154 (661)
++|++|++.+++. ||+||+.+... ... .++++.++.+++.+..+. .++. ....||||||||
T Consensus 71 i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqr 138 (229)
T 2pze_A 71 ISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRAR 138 (229)
T ss_dssp EEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHH
T ss_pred EEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHH
Confidence 8999999988886 99999987521 111 123445555565543332 2221 246799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI-LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~-L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|++|+|||||+|||+.++..+++. +++++ +|+|||++||++ ..+ ..||++++|++|++++.|++++
T Consensus 139 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~ 215 (229)
T 2pze_A 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSE 215 (229)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999997 45664 489999999996 345 4699999999999999998654
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-42 Score=347.99 Aligned_cols=205 Identities=24% Similarity=0.388 Sum_probs=161.8
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.++++|+++.++. .++.+|+|+|+++++||+++|+|||||||||||++|+|++++ .+|+|.++| .
T Consensus 3 ~l~~~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g--------~ 67 (237)
T 2cbz_A 3 SITVRNATFTWAR----SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG--------S 67 (237)
T ss_dssp CEEEEEEEEESCT----TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS--------C
T ss_pred eEEEEEEEEEeCC----CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC--------E
Confidence 4899999998742 135799999999999999999999999999999999999987 489999998 3
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH---HHHHcCCCc-cccccccCccccccCHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE---AITEMGLED-CADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
++||+|++.+ +.+||+||+.+.... ..+. .+++.+ +.+.+++.+ ..++.++ ..+.+|||||||||+|
T Consensus 68 i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~l 138 (237)
T 2cbz_A 68 VAYVPQQAWI-QNDSLRENILFGCQL------EEPY-YRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSL 138 (237)
T ss_dssp EEEECSSCCC-CSEEHHHHHHTTSCC------CTTH-HHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHH
T ss_pred EEEEcCCCcC-CCcCHHHHhhCcccc------CHHH-HHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHH
Confidence 8999999864 578999999875321 1111 111111 122333321 1122222 2345799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILK---NIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~---~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||||+.+|++|||||||+|||+.++..+++.|+ +++ +|+|||++||++. .+ ..||++++|++|++++.|++++
T Consensus 139 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 139 ARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHH
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999999995 443 4899999999974 44 5799999999999999998654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=372.98 Aligned_cols=211 Identities=20% Similarity=0.299 Sum_probs=179.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.++. ..+.+|+|||+++++||+++|+|||||||||||++|+|+++ .+|+|.++|++...
T Consensus 19 ~i~~~~l~~~y~~----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 19 QMTVKDLTAKYTE----GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CEEEEEEEEESSS----SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCHH
T ss_pred eEEEEEEEEEecC----CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCChH
Confidence 4889999998852 13579999999999999999999999999999999999975 38999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccccccCHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN------WHWRGISGG 150 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSgG 150 (661)
.++.+|||+|++.+++ +||+||+.+.. ... +++++++++.++|.+..+++++. .....||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 1367999999999987 69999996321 112 34678899999999888887642 112349999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 151 EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 151 erqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|+++||. +....||+|++|++|+++..|+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~ 236 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDS 236 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 479999999996 3556799999999999999999
Q ss_pred CCCh
Q 045930 231 AKSA 234 (661)
Q Consensus 231 ~~~~ 234 (661)
+++.
T Consensus 237 ~~el 240 (390)
T 3gd7_A 237 ILEL 240 (390)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=379.16 Aligned_cols=213 Identities=25% Similarity=0.379 Sum_probs=179.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.+++ .++.+|+|+|+++++||++||+||||||||||+|+|+|+++|. +|+|.+||++...
T Consensus 341 ~i~~~~v~~~y~~----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 341 EVDVKDVTFTYQG----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLT 413 (582)
T ss_pred eEEEEEEEEEcCC----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHH
Confidence 4789999998852 1256999999999999999999999999999999999999884 8999999987531
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA-------DRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+|+.+.. |+.+|+ ...+|||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSg 483 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSG 483 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCH
Confidence 24679999999999875 99999998531 1 122 24577888888876554 444543 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||++++|++|++++.|
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 899999999974 44 579999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 561 ~~~~l 565 (582)
T 3b5x_A 561 RHADL 565 (582)
T ss_pred CHHHH
Confidence 87654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=379.15 Aligned_cols=213 Identities=28% Similarity=0.380 Sum_probs=179.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++.+|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.+||++...
T Consensus 341 ~i~~~~v~~~y~~----~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 341 DLEFRNVTFTYPG----REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 413 (582)
T ss_dssp CEEEEEEEECSSS----SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHH
T ss_pred cEEEEEEEEEcCC----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHH
Confidence 3789999998752 1256999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA-------DRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+.. |+.+|+ ...+|||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSg 483 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFND-TVANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSG 483 (582)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCH
T ss_pred HHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCH
Confidence 24579999999999875 99999998531 1 122 24577788888886543 455554 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||++++|++|++++.|
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERG 560 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999975 899999999974 44 579999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+.++.
T Consensus 561 ~~~~l 565 (582)
T 3b60_A 561 THSEL 565 (582)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.71 Aligned_cols=213 Identities=27% Similarity=0.396 Sum_probs=177.4
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. .++++|+|+|+++++||++||+||||||||||+++|+|.++|. +|+|.+||++...
T Consensus 339 ~i~~~~v~~~y~~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 339 RIDIDHVSFQYND----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CEEEEEEEECSCS----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCC----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 4789999998753 2357999999999999999999999999999999999999884 9999999987542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-------CADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSg 149 (661)
.++.+|||+|++.+++. ||+||+.++. + ..+. +++.+.++..++.+ -.|+.+|+ ...+|||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSg 480 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSG 480 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCH
Confidence 24579999999999877 9999998752 1 1222 33555566655543 45566654 3457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|+++ .+ +.||+|++|++|++++.|
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-TI-THADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999854 799999999974 44 569999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 558 ~~~el~ 563 (578)
T 4a82_A 558 THRELI 563 (578)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 976543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-41 Score=381.65 Aligned_cols=213 Identities=27% Similarity=0.409 Sum_probs=176.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ..+.+|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.+||++...
T Consensus 341 ~i~~~~v~~~y~~----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 341 SVSFENVEFRYFE----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CEEEEEEEECSSS----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHH
T ss_pred cEEEEEEEEEcCC----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHH
Confidence 4889999998853 2357999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.+++++||+|++.+++. ||+||+.++.. ..+.++ +.+.++..++ .+-.|+.+|+ ...+|||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSg 482 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSG 482 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCH
Confidence 24679999999999876 99999987521 123332 3334444443 3345566654 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+|||||++||+.++..+.+.|+++. +|+|+|+++|+++ . ...||+|++|++|++++.|
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~-~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-T-ALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-H-HTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-H-HHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999985 4899999999974 3 4689999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 560 ~~~el~ 565 (587)
T 3qf4_A 560 THKELL 565 (587)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 976654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=377.83 Aligned_cols=212 Identities=25% Similarity=0.410 Sum_probs=175.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++++|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.+||.+...
T Consensus 354 ~i~~~~v~~~y~~-----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 354 EIEFKNVWFSYDK-----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CEEEEEEECCSSS-----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEECCC-----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHH
Confidence 4789999987742 356999999999999999999999999999999999999884 9999999988542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-------ADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. ||+||+.++. + ..+++ .+.++++..++.+. .|+.+|+ ...+|||
T Consensus 426 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSg 494 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFST-TVKENLKYGN----P-GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQ 494 (598)
T ss_dssp HHHHHEEEECTTCCCCSS-BHHHHHHSSS----T-TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCH
T ss_pred HHHhceEEEeCCCccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCH
Confidence 24579999999998865 9999998752 1 12222 34555555555443 3444442 2357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+||||||+||+.+...+.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|++++.|
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECS
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999986 5899999999985 45 459999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 572 ~~~~l~ 577 (598)
T 3qf4_B 572 KHDELI 577 (598)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 876543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=340.69 Aligned_cols=197 Identities=21% Similarity=0.380 Sum_probs=153.5
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++. .+.+|+|+|+++++||+++|+||||||||||||+|+|++++ .+|+|.++| .+
T Consensus 41 l~~~~l~~~--------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g--------~i 101 (290)
T 2bbs_A 41 LSFSNFSLL--------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS--------CE
T ss_pred EEEEEEEEc--------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC--------EE
Confidence 566777652 14699999999999999999999999999999999999987 489999987 38
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcccccc-------ccCccccccCHHHHHHH
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRL-------IGNWHWRGISGGEKKRL 155 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~-------vg~~~~~~LSgGerqRv 155 (661)
+|++|++.+++. ||+||+. .. . ... ..+++.++.+++.+..+.. ++. ....||||||||+
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv 168 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARI 168 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHH
Confidence 999999988885 9999997 32 1 111 1234455666665443322 221 2357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 156 SIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL-KNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 156 sIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L-~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+|||||+.+|++|||||||+|||+.++..+++.+ ++++ +|+|||+++|++ ..+ ..||++++|++|++++.|++++.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l 245 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSEL 245 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999974 5554 489999999996 345 56999999999999999987654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=395.02 Aligned_cols=217 Identities=28% Similarity=0.463 Sum_probs=183.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|++ +++.++|+|||++|+|||.+||+||||||||||+++|.|++++. +|+|.+||.+.+.
T Consensus 1076 ~I~f~nVsf~Y~~---~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPE---RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CEEEEEEEECCTT---SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHH
T ss_pred eEEEEEEEEeCCC---CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHH
Confidence 4899999999864 23457999999999999999999999999999999999999884 8999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.+++++|||||+.+|+. |++|||.|+.. |.+.+.++ +.++++..++ .+-.||.+|+. ...|||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~-G~~LSg 1220 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDR-GTQLSG 1220 (1321)
T ss_dssp HHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTT-SCSSCH
T ss_pred HHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCC-CcccCH
Confidence 26789999999999987 99999987632 22344444 5555655554 45678888863 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+||||||+||+.+...|.+.|+++.+ |+|+|+++|.++ ....||+|++|++|+++++|
T Consensus 1221 GQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEEECSSSS--TTTTCSEEEEESSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC-CCEEEEeccCHH--HHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988754 799999999975 45679999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
++++.++
T Consensus 1298 th~eLl~ 1304 (1321)
T 4f4c_A 1298 THTQLMS 1304 (1321)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9876553
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=381.90 Aligned_cols=214 Identities=29% Similarity=0.426 Sum_probs=182.7
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.|++ .+++++|+|+|+++++||.+||+||||||||||+++|.|.+++ .+|+|.+||.+.+.
T Consensus 415 ~I~~~nvsF~Y~~---~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 415 DITVENVHFTYPS---RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CEEEEEEEECCSS---STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHH
T ss_pred cEEEEEeeeeCCC---CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccHH
Confidence 4899999999864 2356899999999999999999999999999999999999998 49999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-------LEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSg 149 (661)
.++.+|||+|++.+++. ||+|||.|+. + ..+.++ +.++++..+ |.+-.||.+|+.+ ..|||
T Consensus 489 ~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~----~-~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~G-~~LSG 557 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALFNC-TIEENISLGK----E-GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDRG-TQLSG 557 (1321)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHHTTC----T-TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSSS-CCCCH
T ss_pred HHhhcccccCCcceeeCC-chhHHHhhhc----c-cchHHH----HHHHHHHccchhHHHcCCCCCccEecCCC-CCCCH
Confidence 25679999999999876 9999999863 1 234443 445555444 4566788998743 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++||||++++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|++|++++.|
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~G 634 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVG 634 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccC
Confidence 999999999999999999999999999999999999999999865 899999999974 56789999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 635 th~eL~ 640 (1321)
T 4f4c_A 635 DHRALM 640 (1321)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 976654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=372.61 Aligned_cols=214 Identities=30% Similarity=0.436 Sum_probs=177.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++.+++|+|||+++++||++||+||||||||||+++|+|.+++. +|+|.++|.+...
T Consensus 387 ~i~~~~v~~~y~~---~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 387 NLEFKNIHFSYPS---RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CEEEEEEEECCSS---TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCC---CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHH
Confidence 4789999998863 12357999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-------LEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSg 149 (661)
.++.+|||+|++.+++. ||+||+.++.. ..+.++. .+.++..+ +.+..|+.+|+ ...+|||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSg 529 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEI----EKAVKEANAYDFIMKLPHQFDTLVGE-RGAQLSG 529 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHH----HHHHHHTTCHHHHHHSTTGGGCCCSS-SSCSSCH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHH----HHHHHHhCcHHHHHhccccccccccC-CCCccCH
Confidence 24579999999999876 99999998732 2334433 33333332 34456777775 3457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +|+|+|+++|++ +.+ ..||+|++|++|++++.|
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998875 489999999996 345 459999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
+.++..
T Consensus 607 ~~~~l~ 612 (1284)
T 3g5u_A 607 NHDELM 612 (1284)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 987654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=375.79 Aligned_cols=216 Identities=30% Similarity=0.442 Sum_probs=177.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.++. ++++++|+|+|+++++||++||+||||||||||+++|+|++++. +|+|.+||.+.+.
T Consensus 1030 ~i~~~~v~~~y~~---~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPT---RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CEEEEEEEBCCSC---GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHH
T ss_pred cEEEEEEEEECCC---CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHH
Confidence 4789999998863 22356999999999999999999999999999999999999884 9999999987532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG-------LEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++ .||+||+.++... ...+.++. .+.++..+ +.+..||.+|+ ....|||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSg 1174 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSG 1174 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHHH----HHHHHHhCcHHHHHhCccccccccCC-CCCccCH
Confidence 2567999999998775 5999999875321 12334433 33333333 44556777775 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+++|+||+|||||+|||+.+...+.+.|+++. +|+|||+++|++. .+ ..||+|++|++|++++.|
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998854 5899999999975 45 559999999999999999
Q ss_pred CCCChh
Q 045930 230 EAKSAP 235 (661)
Q Consensus 230 ~~~~~~ 235 (661)
++++..
T Consensus 1252 ~~~~l~ 1257 (1284)
T 3g5u_A 1252 THQQLL 1257 (1284)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 876543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=343.38 Aligned_cols=203 Identities=23% Similarity=0.268 Sum_probs=174.3
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.+. ...|+++|+++++||+++|+|||||||||||++|+|++++. +|+|.+ ...+
T Consensus 358 l~~~~l~~~~~-------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~--------~~~i 419 (607)
T 3bk7_A 358 VEYPRLVKDYG-------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW--------DLTV 419 (607)
T ss_dssp EEECCEEEECS-------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC--------CCCE
T ss_pred EEEeceEEEec-------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE--------eeEE
Confidence 67778877653 13689999999999999999999999999999999999874 788875 2459
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|+....+.+||.|++....... ....++++++++.+||.+..++.++ .|||||||||+||++|+
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLL 487 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHT
T ss_pred EEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHH
Confidence 99999988778899999887641100 0113568899999999988888875 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC--CeEEEecCCCChhH
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKSAPT 236 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 236 (661)
.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++||+ .++..+||++++|++ |+++..|+++++.+
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999999975 599999999996 678899999999986 88888999988664
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=339.78 Aligned_cols=203 Identities=23% Similarity=0.285 Sum_probs=173.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|+++.+. ...|+++|+++++||++||+||||||||||+++|+|+.++. +|+|.+ ...+
T Consensus 288 l~~~~l~~~~~-------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~--------~~~i 349 (538)
T 1yqt_A 288 VTYPRLVKDYG-------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW--------DLTV 349 (538)
T ss_dssp EEECCEEEEET-------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC--------CCCE
T ss_pred EEEeeEEEEEC-------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE--------CceE
Confidence 67778877653 13689999999999999999999999999999999999874 788875 2359
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|+....+.+||.|++........ . .+++++++++.+|+.+..++.++ .|||||||||+||++|+
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~ 417 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLL 417 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHT
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHH
Confidence 999999877788999998875411110 0 13467889999999988888875 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC--CeEEEecCCCChhH
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKSAPT 236 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 236 (661)
.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||. .++..+||++++|++ |+++..|+++++..
T Consensus 418 ~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999999975 599999999995 688899999999986 88889999987665
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=334.12 Aligned_cols=204 Identities=21% Similarity=0.299 Sum_probs=170.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
++++|++..+. ...|+++|+++++||+++|+||||||||||+++|+|++++. +|+|.+++ +.+
T Consensus 270 l~~~~l~~~~~-------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~-------~~i 332 (538)
T 3ozx_A 270 MKWTKIIKKLG-------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------QIL 332 (538)
T ss_dssp EEECCEEEEET-------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC-------CCE
T ss_pred EEEcceEEEEC-------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC-------eee
Confidence 56667776553 23578889999999999999999999999999999999884 89998764 358
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|++|+......+||+|++.+..... ... ....++++++.+||.+..++.++ .|||||||||+||++|+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHH
Confidence 99999877667899999998742111 101 12457889999999998888875 59999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC--CeEEEecCCCChh
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKSAP 235 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~ 235 (661)
.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++||. .++..+||+|++|++ |.....+++.+..
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999999986 489999999996 688899999999986 5566666665543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=328.24 Aligned_cols=192 Identities=23% Similarity=0.326 Sum_probs=163.7
Q ss_pred cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCC
Q 045930 21 RRLLNGLTGYAEPA-----RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 21 ~~iL~~vs~~i~~G-----e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~l 95 (661)
+.+++|+|+++++| |+++|+||||||||||+++|+|++++. +|+. .....++|++|+.......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~--------~~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD--------IPKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC--------CCSCCEEEECSSCCCCCCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC--------ccCCcEEEecccccccCCc
Confidence 45789999999999 789999999999999999999999884 6752 1234699999997766677
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 045930 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS 175 (661)
Q Consensus 96 TV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts 175 (661)
||+|++.... + ..... .+.++++++.+||.+.+|+.++ .|||||||||+||++|+.+|++|||||||+
T Consensus 429 tv~e~~~~~~--~--~~~~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--R--GQFLN---PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--S--STTTS---HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--h--ccccc---HHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875432 1 11111 2457789999999999998875 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeC--CeEEEecCCCChhH
Q 045930 176 GLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSG--GETVYFGEAKSAPT 236 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~--G~~v~~G~~~~~~~ 236 (661)
|||+.++..+++.|+++++ .|+|||++|||. .++..+||||++|++ |+++..|+++++..
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999999975 599999999996 688999999999986 99999999988764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=334.49 Aligned_cols=207 Identities=27% Similarity=0.345 Sum_probs=139.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCc----eeeEEEECCee
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLL---------------------DALAGRLSGNVV----MTGNVLLNGKK 74 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------------------~~LaG~~~~~~~----~~G~i~~~g~~ 74 (661)
.+.+|+|||++|++||++||+||||||||||+ ++++|+..++.. ..|.|.++|..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45789999999999999999999999999998 777777665311 14667777764
Q ss_pred ccc-ccCeEEEEecCCC-------------------CCCCCCHHHHHHHHHhcCCCCCCCH------HHHHHHHHHHHHH
Q 045930 75 RRL-DYGGVAYVTQENI-------------------MLGTLTVRETIAYSAHLRLPSNMNN------EEITDVIEEAITE 128 (661)
Q Consensus 75 ~~~-~~~~i~yv~Q~~~-------------------l~~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~ 128 (661)
... .++.+++|+|... .++.+||+||+.+...+........ ++..++ .++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHH-HHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHH
Confidence 321 2334555555432 2467899999987543221110000 011111 245888
Q ss_pred cCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 045930 129 MGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ 205 (661)
Q Consensus 129 lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq 205 (661)
+||.+. .|+.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+++||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 677775 599999999999999999998 999999999999999999999999998889999999999
Q ss_pred CchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 206 PSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 206 ~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
+ .. ...||++++| ++|++++.|++++.
T Consensus 264 ~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 264 E-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp H-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred H-HH-HhhCCEEEEecccccccCCEEEEecCHHHH
Confidence 6 34 4569999999 89999999987654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=330.58 Aligned_cols=192 Identities=26% Similarity=0.372 Sum_probs=156.2
Q ss_pred EEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEE---------EECCeecc
Q 045930 6 EEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV---------LLNGKKRR 76 (661)
Q Consensus 6 ~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i---------~~~g~~~~ 76 (661)
+|+++.+. ....+|+|+| ++++||+++|+||||||||||||+|+|+++++ +|++ .++|.+..
T Consensus 95 ~~ls~~yg-----~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~ 165 (607)
T 3bk7_A 95 EDCVHRYG-----VNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQ 165 (607)
T ss_dssp GSEEEECS-----TTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHH
T ss_pred CCeEEEEC-----CCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehh
Confidence 45566553 1224899999 99999999999999999999999999999874 6764 34564321
Q ss_pred -------cccCeEEEEecCCCCCC---CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccc
Q 045930 77 -------LDYGGVAYVTQENIMLG---TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRG 146 (661)
Q Consensus 77 -------~~~~~i~yv~Q~~~l~~---~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~ 146 (661)
.....+++++|.....+ ..||.|++... .. +++++++++.+||++..|+.++ +
T Consensus 166 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------~~-----~~~~~~~L~~lgL~~~~~~~~~-----~ 228 (607)
T 3bk7_A 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------DE-----VGKFEEVVKELELENVLDRELH-----Q 228 (607)
T ss_dssp HHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------CC-----SSCHHHHHHHTTCTTGGGSBGG-----G
T ss_pred hhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-------HH-----HHHHHHHHHHcCCCchhCCChh-----h
Confidence 11245789998743322 23999998631 10 2357889999999999999875 5
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||+++||+ ..+..++|+|++|+++.
T Consensus 229 LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 999999999999999999999999999999999999999999999988899999999995 57888999999998654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=326.78 Aligned_cols=191 Identities=24% Similarity=0.329 Sum_probs=155.9
Q ss_pred EEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEE---------EECCeecc-
Q 045930 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV---------LLNGKKRR- 76 (661)
Q Consensus 7 ~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i---------~~~g~~~~- 76 (661)
||++.++. ...+|+|+| ++++||+++|+||||||||||||+|+|.+++. +|++ .++|.+..
T Consensus 26 ~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~ 96 (538)
T 1yqt_A 26 DCVHRYGV-----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQN 96 (538)
T ss_dssp CEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHH
T ss_pred CcEEEECC-----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHH
Confidence 56665531 224899999 99999999999999999999999999998774 6764 34564321
Q ss_pred ------cccCeEEEEecCCCCCCC---CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCcccccc
Q 045930 77 ------LDYGGVAYVTQENIMLGT---LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGI 147 (661)
Q Consensus 77 ------~~~~~i~yv~Q~~~l~~~---lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L 147 (661)
.....+++++|+....+. .||.|++.... ..++++++++.+||++..++.++ +|
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~-----~L 159 (538)
T 1yqt_A 97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQ-----HL 159 (538)
T ss_dssp HHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGG-----GC
T ss_pred HHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChh-----hC
Confidence 112458899997544332 38999875310 12357889999999988888875 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
||||||||+||+||+.+|++|||||||++||+.++..+++.|++++++|.|||+++|+. .++..+||+|++|++|.
T Consensus 160 SgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 99999999999999999999999999999999999999999999988899999999995 58889999999998653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=331.07 Aligned_cols=195 Identities=26% Similarity=0.341 Sum_probs=161.8
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|...|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+| |+| +|.+... ...+
T Consensus 436 L~~~~ls~~yg------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~~~ 497 (986)
T 2iw3_A 436 LCNCEFSLAYG------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-ECRT 497 (986)
T ss_dssp EEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TSCE
T ss_pred eEEeeEEEEEC------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ceeE
Confidence 55567777763 2579999999999999999999999999999999995 111 3332211 1247
Q ss_pred EEEecCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccccccCHHHHHHHHHHHH
Q 045930 83 AYVTQEN-IMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 83 ~yv~Q~~-~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
+|++|+. .+++.+||.|++.+ ... .. +++++++++.+||. +..++.++ +|||||||||+||++
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArA 562 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARA 562 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHH
Confidence 8999984 67889999999975 111 11 46788999999995 67888875 599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE-EecCCCCh
Q 045930 161 ILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETV-YFGEAKSA 234 (661)
Q Consensus 161 L~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v-~~G~~~~~ 234 (661)
|+.+|++|||||||+|||+.++..+.+.|++ .|+|||+++|+. .++.++||++++|++|+++ +.|+.++.
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 9999999999999999999999999999988 589999999995 6788999999999999997 68887554
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=330.66 Aligned_cols=207 Identities=26% Similarity=0.372 Sum_probs=163.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++|+++.+++ ..+.+|+|+|+++++||+++|+||||||||||||+|+|++++. +|+|.++|. ..
T Consensus 671 mL~v~nLs~~Y~g----~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 671 IVKVTNMEFQYPG----TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEECCTT----CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred eEEEEeeEEEeCC----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 3789999987642 1256999999999999999999999999999999999999884 899999863 24
Q ss_pred EEEEecCCCC----CCCCCHHHHHHHHHhcC------------CC-----------------------------------
Q 045930 82 VAYVTQENIM----LGTLTVRETIAYSAHLR------------LP----------------------------------- 110 (661)
Q Consensus 82 i~yv~Q~~~l----~~~lTV~E~l~~~~~l~------------~~----------------------------------- 110 (661)
++|++|++.. ....|++|++.+..... +.
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8999997531 23468888876532100 00
Q ss_pred -----------------CCCC----------------------------------HHHHHHHHHHHHHHcCCCc-c-ccc
Q 045930 111 -----------------SNMN----------------------------------NEEITDVIEEAITEMGLED-C-ADR 137 (661)
Q Consensus 111 -----------------~~~~----------------------------------~~~~~~~v~~~l~~lgL~~-~-~d~ 137 (661)
..++ +...+++++++++.+||.+ . .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 0000 0001356888999999975 3 566
Q ss_pred cccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 138 ~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
.++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||++ +++..+||++
T Consensus 898 ~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrV 968 (986)
T 2iw3_A 898 RIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEV 968 (986)
T ss_dssp CGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEE
T ss_pred Ccc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEE
Confidence 664 59999999999999999999999999999999999999998888765 67999999995 5788899999
Q ss_pred EEEeCCeEEEecC
Q 045930 218 FLLSGGETVYFGE 230 (661)
Q Consensus 218 ~lL~~G~~v~~G~ 230 (661)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999987775
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-32 Score=319.46 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=147.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-----CC-------------CCCCceeeEEEECCeecccc----
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG-----RL-------------SGNVVMTGNVLLNGKKRRLD---- 78 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG-----~~-------------~~~~~~~G~i~~~g~~~~~~---- 78 (661)
+.+|+|||++|++||++||+||||||||||+++|.+ .+ .+-....|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 458999999999999999999999999999987641 00 00011245677776543110
Q ss_pred ------------------------------------------cCeEEEEecCCCCCC-----------------------
Q 045930 79 ------------------------------------------YGGVAYVTQENIMLG----------------------- 93 (661)
Q Consensus 79 ------------------------------------------~~~i~yv~Q~~~l~~----------------------- 93 (661)
....|++.|+..+++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 011244444433322
Q ss_pred ---------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhh
Q 045930 94 ---------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILT 163 (661)
Q Consensus 94 ---------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~ 163 (661)
.+||.||+.+.... . ..+++.+.++.+||.+ ..++.++ +|||||||||+|||||+.
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCch-----hCCHHHHHHHHHHHHHhh
Confidence 47999999875321 1 2345677888999964 4566654 699999999999999999
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 164 RP---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 164 ~P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
+| ++|||||||+|||+.++..+++.|++++++|+|||+++||+. . ...||+|++| ++|++++.|+++++
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~ 638 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHH
Confidence 87 599999999999999999999999999988999999999963 4 4679999999 89999999997654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=304.19 Aligned_cols=188 Identities=24% Similarity=0.304 Sum_probs=146.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE-----------ECCeeccc-----ccC--eE
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL-----------LNGKKRRL-----DYG--GV 82 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~-----------~~g~~~~~-----~~~--~i 82 (661)
...|++++ .+++||++||+||||||||||||+|+|+++|+ +|+|. +.|..... ..+ ..
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKA 166 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCC
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHHHhhhh
Confidence 45677777 58999999999999999999999999999884 67762 23322100 001 12
Q ss_pred EEEecCCCC------CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 83 AYVTQENIM------LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 83 ~yv~Q~~~l------~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
.+.+|.... -+..++.+++.... . +.+++++++++.+||.+..|+.++ +|||||||||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~ 231 (608)
T 3j16_B 167 IIKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFA 231 (608)
T ss_dssp EEECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHH
T ss_pred hhchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHH
Confidence 334443211 12235666554321 1 113568899999999999999886 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+. .++..++|+|++|++|..++.
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence 99999999999999999999999999999999999988899999999996 689999999999998775553
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=299.76 Aligned_cols=182 Identities=24% Similarity=0.298 Sum_probs=143.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEE-----------EECCeeccc-------ccCeEEE
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV-----------LLNGKKRRL-------DYGGVAY 84 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i-----------~~~g~~~~~-------~~~~i~y 84 (661)
-|.++.. .++||++||+||||||||||||+|+|.++|+ +|+| .++|++... ....+..
T Consensus 15 ~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 90 (538)
T 3ozx_A 15 KLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVH 90 (538)
T ss_dssp EEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEE
T ss_pred eecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhh
Confidence 3444443 6799999999999999999999999999884 7877 466654310 1123444
Q ss_pred EecCCCC---CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 85 VTQENIM---LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 85 v~Q~~~l---~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
..|.... +...||+|++.... .+++++++++.+|+.+..|+.++ +|||||||||+||+||
T Consensus 91 ~~~~~~~~~~~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 91 KIQYVEYASKFLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASL 153 (538)
T ss_dssp ECSCTTGGGTTCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 5554322 12348888664210 12357789999999999998875 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|+. .++..+||+|++|++|..++
T Consensus 154 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 999999999999999999999999999999976 99999999996 68999999999998765443
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=296.19 Aligned_cols=199 Identities=25% Similarity=0.334 Sum_probs=151.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCC---Ccee------eEEEECCeeccc-----
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLL---------DALAGRLSGN---VVMT------GNVLLNGKKRRL----- 77 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL---------~~LaG~~~~~---~~~~------G~i~~~g~~~~~----- 77 (661)
...|+|||+++++|++++|+||||||||||+ +.+.+..... .... +.+.+++.+...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 4444432110 0112 334444432100
Q ss_pred -----------------------------------------ccCeEEEEecCCCCCC-----------------------
Q 045930 78 -----------------------------------------DYGGVAYVTQENIMLG----------------------- 93 (661)
Q Consensus 78 -----------------------------------------~~~~i~yv~Q~~~l~~----------------------- 93 (661)
..+..|++.++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0123578888776665
Q ss_pred ---------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhh
Q 045930 94 ---------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILT 163 (661)
Q Consensus 94 ---------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~ 163 (661)
.+||.|++.|.... ....++.++|+.+||... .++.+ ..|||||||||.||+||+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhh
Confidence 36888888875321 123567889999999753 34444 4699999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 164 RP---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 164 ~P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
+| ++|||||||+|||+.+...+++.|++++++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 75 79999999999999999999999999998899999999996 444 569999999 89999999998764
Q ss_pred h
Q 045930 235 P 235 (661)
Q Consensus 235 ~ 235 (661)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-30 Score=298.30 Aligned_cols=197 Identities=24% Similarity=0.340 Sum_probs=151.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cC----C------CCCC-ceee------EEEECCeecccc-----
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-GR----L------SGNV-VMTG------NVLLNGKKRRLD----- 78 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~----~------~~~~-~~~G------~i~~~g~~~~~~----- 78 (661)
..|+|||++|++||++||+|+||||||||+++|. |. + ++.. ...| .|.++|.+....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999853 21 1 1111 2234 478887653100
Q ss_pred -------------------cCeEEEEecCCCCC----------------------C------------------------
Q 045930 79 -------------------YGGVAYVTQENIML----------------------G------------------------ 93 (661)
Q Consensus 79 -------------------~~~i~yv~Q~~~l~----------------------~------------------------ 93 (661)
.+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 12246666643221 1
Q ss_pred --------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHHHhhC
Q 045930 94 --------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTR 164 (661)
Q Consensus 94 --------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~ 164 (661)
.+||.|++.|... . .. .+++.++++.+||.. ..++.++ .|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcC
Confidence 4688888876432 1 11 234578999999987 6677664 5999999999999999986
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 165 P---QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 165 P---~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
| ++|||||||+|||+.++..+++.|++++++|.|||+++|++ +++ ..||+|++| ++|++++.|+++++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el 940 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEV 940 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECSSSTTSCCSEEEEESHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHH
Confidence 5 99999999999999999999999999998899999999996 444 689999999 78999999987643
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=296.10 Aligned_cols=195 Identities=29% Similarity=0.350 Sum_probs=147.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC-------C---C------------Cceee-------EEEECC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDA-LAGRLS-------G---N------------VVMTG-------NVLLNG 72 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~-LaG~~~-------~---~------------~~~~G-------~i~~~g 72 (661)
+|+|||++|++||++||+|+||||||||++. |+|.+. + . ....| .|.++|
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 775431 1 0 01356 688888
Q ss_pred eecccc-c---------------------------------------------CeEEEEecCCCCCC-------------
Q 045930 73 KKRRLD-Y---------------------------------------------GGVAYVTQENIMLG------------- 93 (661)
Q Consensus 73 ~~~~~~-~---------------------------------------------~~i~yv~Q~~~l~~------------- 93 (661)
.+.... + +..|++..+..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 653210 0 01122222222222
Q ss_pred -------------------CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHH
Q 045930 94 -------------------TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 94 -------------------~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerq 153 (661)
.+||.|++.|... ....+++.++++.+||... .++.++ .|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~---------~~~~~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFAD---------ESAIFRALDTLREVGLGYLRLGQPAT-----ELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT---------SHHHHHHHHHHHHTTCTTSBTTCCGG-----GCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhhc---------chHHHHHHHHHHHcCCCcccccCCcc-----cCCHHHHH
Confidence 2455555544211 1123468899999999873 466654 69999999
Q ss_pred HHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCe
Q 045930 154 RLSIALEILTR---PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGE 224 (661)
Q Consensus 154 RvsIa~aL~~~---P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~ 224 (661)
||.||++|+.+ |++|||||||+|||+.+...+.+.|++++++|.|||+++|++ +++ +.||+|++| ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 799999999999999999999999999998899999999996 466 889999999 7999
Q ss_pred EEEecCCCC
Q 045930 225 TVYFGEAKS 233 (661)
Q Consensus 225 ~v~~G~~~~ 233 (661)
+++.|++++
T Consensus 816 Iv~~g~~~e 824 (842)
T 2vf7_A 816 LVAQGTPAE 824 (842)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 999998754
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-28 Score=263.37 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=146.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------Ccee
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-----------------------------------VVMT 65 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 65 (661)
..+++++|+++.+| +++|+|||||||||||++|+++..+. ..-.
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35799999999999 99999999999999999998766421 0126
Q ss_pred eEEEECCeeccc------ccCeEEEEecCCCCCCCCCHHHHHHHHHhcC-----------------------CCCCC---
Q 045930 66 GNVLLNGKKRRL------DYGGVAYVTQENIMLGTLTVRETIAYSAHLR-----------------------LPSNM--- 113 (661)
Q Consensus 66 G~i~~~g~~~~~------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~-----------------------~~~~~--- 113 (661)
|++.+||++... ....+++++|++.++.. +..+...|.-... +....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999987542 12348999998766543 4544444322110 00000
Q ss_pred -------------------------------CHHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 045930 114 -------------------------------NNEEITDVIEEAITEMGLEDCA----------------DR---LIGN-- 141 (661)
Q Consensus 114 -------------------------------~~~~~~~~v~~~l~~lgL~~~~----------------d~---~vg~-- 141 (661)
..+...+.+++.++.+++.+.. ++ .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0011223455666777764310 00 1110
Q ss_pred ----ccccc-cCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 045930 142 ----WHWRG-ISGGEKKRLSIALEILTRP--QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALF 214 (661)
Q Consensus 142 ----~~~~~-LSgGerqRvsIa~aL~~~P--~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~ 214 (661)
..++. +|||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++.+.|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhc
Confidence 01122 6999999999999999999 9999999999999999999999999998 589999999996 466889
Q ss_pred CeEEEE----eCCeEEEec
Q 045930 215 DDLFLL----SGGETVYFG 229 (661)
Q Consensus 215 D~v~lL----~~G~~v~~G 229 (661)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-30 Score=288.54 Aligned_cols=186 Identities=13% Similarity=0.116 Sum_probs=147.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee-E-EEECCeecccccCeEEEEecCCC---CCCCCCHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG-N-VLLNGKKRRLDYGGVAYVTQENI---MLGTLTVR 98 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~-i~~~g~~~~~~~~~i~yv~Q~~~---l~~~lTV~ 98 (661)
+.++|+++++||+++|+||||||||||+|+|+|+..+ .+| + |.++|.. ++.++|++|+.. +.+.+||+
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~~----~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLDP----QQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECCT----TSCSSSCSSCCEEEECCSCCCTT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCCc----cCCeeeeccchhhcccccccchh
Confidence 3578999999999999999999999999999999876 489 8 9999832 466899999974 45668999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH--HhhCCCE----EEEeC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE--ILTRPQL----LFLDE 172 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a--L~~~P~l----llLDE 172 (661)
||+ |....... .. .++++.++++.+||++..+ . .+|||||||||+||++ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~--~~---~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSG--AT---LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSS--CC---SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccC--cc---hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 65432111 10 1234566788889987765 2 4699999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch-----HHHhhcCe-----EEEEe-CCeEEEecCCCCh
Q 045930 173 -PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS-----EVFALFDD-----LFLLS-GGETVYFGEAKSA 234 (661)
Q Consensus 173 -PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~-----~i~~~~D~-----v~lL~-~G~~v~~G~~~~~ 234 (661)
||+|||+. ...+.+.+++ .|.|+|+++|+..+ ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 4444444433 37899999999741 56689999 99999 99999 8887543
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=238.53 Aligned_cols=82 Identities=32% Similarity=0.479 Sum_probs=75.8
Q ss_pred ccccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 144 WRGISGGEKKRLSIALEIL------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ +..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~--~~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR--EFSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH--HHHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch--HHHHhCCEE
Confidence 4579999999999999999 69999999999999999999999999999988899999999996 347889999
Q ss_pred EEEeCCeEEE
Q 045930 218 FLLSGGETVY 227 (661)
Q Consensus 218 ~lL~~G~~v~ 227 (661)
++|++|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=229.51 Aligned_cols=86 Identities=27% Similarity=0.263 Sum_probs=72.9
Q ss_pred cccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE--E
Q 045930 145 RGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL--F 218 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v--~ 218 (661)
..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|++++ +|.+||+++|++ ++.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEEE
Confidence 579999999999999997 5789999999999999999999999999985 489999999995 477899987 7
Q ss_pred EEeCCe-EEEecCCCC
Q 045930 219 LLSGGE-TVYFGEAKS 233 (661)
Q Consensus 219 lL~~G~-~v~~G~~~~ 233 (661)
+|.+|+ .+.....++
T Consensus 295 ~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 295 TMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EESSSCEEEEECCC--
T ss_pred EEeCCEEEEEEEEcch
Confidence 787775 444455444
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-28 Score=240.70 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=99.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC--eecccccCeEEEEecCCCCCCCCCH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG--KKRRLDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g--~~~~~~~~~i~yv~Q~~~l~~~lTV 97 (661)
.+.+|+|+ ++||+++|+|||||||||||++|+|+ ++ .+|+|.... .+....++.+||++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC---cCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35799996 89999999999999999999999999 76 366663210 11112346799999975
Q ss_pred HHHH-HHHH----hcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 98 RETI-AYSA----HLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 98 ~E~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
+||+ .+.. .+. .... .++++++++. |+ ||||||+||++|+.+|++|||||
T Consensus 76 ~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeC
Confidence 4444 2211 111 0001 1235555554 32 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 173 PTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 173 PtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888899999998 6689999 999963
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-25 Score=213.17 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=102.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCC-CCCCCHHHHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM-LGTLTVRETIAYS 104 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l-~~~lTV~E~l~~~ 104 (661)
|||+++++||+++|+||||||||||++++.+-. ..+++.. ..++++|++.- ...-++.+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~---------~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~--- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT---------EVISSDF------CRGLMSDDENDQTVTGAAFDVL--- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG---------GEEEHHH------HHHHHCSSTTCGGGHHHHHHHH---
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC---------eEEccHH------HHHHhcCcccchhhHHHHHHHH---
Confidence 689999999999999999999999999965311 1111110 12556665321 0000111111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 045930 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA---- 180 (661)
Q Consensus 105 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~---- 180 (661)
.... +.....|.....|.. ...|||||||++||++++.+|++|+|||||+|||+.
T Consensus 63 --------------~~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 63 --------------HYIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp --------------HHHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred --------------HHHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 122234555444433 236999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 045930 181 ------------AAFFVVKILKNIAHDGRTIISSIHQPSSEVF 211 (661)
Q Consensus 181 ------------~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~ 211 (661)
.+..+.+.|++++++|.|+|+++|++ +++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEVE 163 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHhh
Confidence 66889999999988899999999996 3443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-26 Score=252.71 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=138.0
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccC
Q 045930 21 RRLLNGLTGYAEPAR--------------------ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge--------------------~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~ 80 (661)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|+.++. +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--~- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--M- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC------C-
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc--e-
Confidence 468999999999999 99999999999999999999998874 899999886542 1
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH--HHHHHHHH
Q 045930 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG--EKKRLSIA 158 (661)
Q Consensus 81 ~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG--erqRvsIa 158 (661)
.+|++|++ .++.+|+.|++.+.. + +.++++.++.+++.+... .+ .+||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~-~~------~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDF-FI------IISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSE-EE------EEESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCC-eE------EeCCCCccHHHHHHH
Confidence 27899985 577889998875431 0 124788899999876532 22 29999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hcC----CEEEEEecCCch-HHHhhcCeEE
Q 045930 159 LEILT----------RPQLLFLDEPTSGLDSAAAFFVVKILKNIA-----HDG----RTIISSIHQPSS-EVFALFDDLF 218 (661)
Q Consensus 159 ~aL~~----------~P~lllLDEPtsGLD~~~~~~i~~~L~~la-----~~g----~tvi~s~Hq~~~-~i~~~~D~v~ 218 (661)
++|+. +|++++|||||+|||+.++.++.+.|+++. +.| .+|++++|+... .+.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999985 223 678899998642 2777777764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=204.07 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=103.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM 113 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 113 (661)
.++|+||||||||||+++|+|.+. +...|... .... ..++.+||++|+. ++.+++ + +.+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETT----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhhc----C
Confidence 589999999999999999999874 33445322 1111 2345789999975 222332 1 1110 0
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 045930 114 NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE-----ILTRPQLLFLDE--PTSGLDSAAAFFVV 186 (661)
Q Consensus 114 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a-----L~~~P~lllLDE--PtsGLD~~~~~~i~ 186 (661)
. -++..++.+ ..||||||||++||++ ++.+|++++||| ||++||+.....+.
T Consensus 65 ~----------------~~~~~~~~~-----~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 T----------------SKKLVGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp C----------------CSSEETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred C----------------ccccccccc-----cCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0 002334444 4699999999999996 999999999999 99999999999888
Q ss_pred HHHHHHHhcCCEEEEEec--CCchHHHhhcCeEEEEeCCeEEE
Q 045930 187 KILKNIAHDGRTIISSIH--QPSSEVFALFDDLFLLSGGETVY 227 (661)
Q Consensus 187 ~~L~~la~~g~tvi~s~H--q~~~~i~~~~D~v~lL~~G~~v~ 227 (661)
+.+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88865 4677888886 234678888888 5566654
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-26 Score=230.29 Aligned_cols=180 Identities=16% Similarity=0.143 Sum_probs=124.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-ccccCeEEEEecCCCCCCCCCHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
.+.+++| .++++||+++|+||||||||||+|+|+|+++ .+...+ .+.+.+. ...++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~--~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSV--SATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECC--CEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcc--cccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 3568888 6999999999999999999999999999985 222222 2222221 12245689999998888888888
Q ss_pred HHHHHHHhcCC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEE
Q 045930 99 ETIAYSAHLRL---PSNMNNEEITDVIEEA------ITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLF 169 (661)
Q Consensus 99 E~l~~~~~l~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lll 169 (661)
|++........ ..+.++++.++++++. ++.+|+.+.+++.++ .|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----AVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----SEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----cEE-----------EEEECCCHHH
Confidence 77642211100 0123345556666665 666677666666653 477 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 170 LDEPTSGL----DSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 170 LDEPtsGL----D~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
|||||+|+ |+..+.++.+.++++++ .|.|+|+++||+ +++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999985 489999999996 68999999999985
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-25 Score=236.07 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=120.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH-
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE- 99 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E- 99 (661)
+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|+| ++|++|++.++.. |++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I-------------~~~v~q~~~lf~~-ti~~~ 172 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV-------------LSFANHKSHFWLA-SLADT 172 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE-------------ECGGGTTSGGGGG-GGTTC
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE-------------EEEecCccccccc-cHHHH
Confidence 45899999999999999999999999999999999986 4766 3567888877764 7776
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
|+.+.. ..+. .+.+.++.+ |.+..| | ..|||||||| ||||+.+|+||| |++||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 776531 1111 344555554 444444 3 4699999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHHHh
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAE 240 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f~~ 240 (661)
.+...+.. .+|++. ..+.+|+| +|++|++++.|+.++...+|..
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 99888752 178863 46789999 9999999999998776555554
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-23 Score=218.68 Aligned_cols=172 Identities=19% Similarity=0.160 Sum_probs=133.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---------c--cCeEEEEecCCC-C
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---------D--YGGVAYVTQENI-M 91 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---------~--~~~i~yv~Q~~~-l 91 (661)
++++|+.+++|++++|+||||||||||++.|+|++++. .|+|.++|.+... . +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 35789999999999999999999999999999998763 7999999876421 1 236999999988 8
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC--EEE
Q 045930 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLF 169 (661)
Q Consensus 92 ~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lll 169 (661)
++.+||+|++.++.... .. ..+++.+|+.+..+++++ +|| |||++||++|+.+|+ +|+
T Consensus 167 ~~~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp CHHHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEE
T ss_pred CHHHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEE
Confidence 89999999998864211 10 134567788777777664 599 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc--------hHHHhhcCeEEEEeCCeE
Q 045930 170 LDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPS--------SEVFALFDDLFLLSGGET 225 (661)
Q Consensus 170 LDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~--------~~i~~~~D~v~lL~~G~~ 225 (661)
|| ||+|||+.+. ++++.+ .|.|+|++||... +.+....+.|..+..|+.
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99 9999998754 355654 4899999999421 233455678888888864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-23 Score=214.86 Aligned_cols=145 Identities=22% Similarity=0.245 Sum_probs=97.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc--cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM 113 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 113 (661)
.++|+||||||||||+|+|+|...+ .+|+|.++|++.. ...+.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~---~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS---RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 4799999999999999999999877 3899999998643 234679999999999999999999988754321 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 045930 114 NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193 (661)
Q Consensus 114 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la 193 (661)
. .+.+.+.++ .+..+.+.+ +||||||||++|||+++. ++++||||.|||+.. .+.++.+.
T Consensus 79 ~----~~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 C----WEPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp C----SHHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred H----HHHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 1 122333333 344555553 599999999999999875 999999999999987 56667776
Q ss_pred hcCCEEEEEecCC
Q 045930 194 HDGRTIISSIHQP 206 (661)
Q Consensus 194 ~~g~tvi~s~Hq~ 206 (661)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999983
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=195.37 Aligned_cols=79 Identities=29% Similarity=0.383 Sum_probs=70.9
Q ss_pred ccccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 144 WRGISGGEKK------RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 144 ~~~LSgGerq------RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++ ++.+.||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4579999999 67778888889999999999999999999999999999988889999999994 578999999
Q ss_pred EEEe--CCe
Q 045930 218 FLLS--GGE 224 (661)
Q Consensus 218 ~lL~--~G~ 224 (661)
++|. +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9996 554
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-22 Score=215.70 Aligned_cols=171 Identities=19% Similarity=0.177 Sum_probs=134.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----------ccCeEEEEecCCC-CC
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----------DYGGVAYVTQENI-ML 92 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----------~~~~i~yv~Q~~~-l~ 92 (661)
+++|+++++|++++|+||||||||||++.|+|++++. .|+|.++|.+... .+..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999998763 7999999876421 1246999999988 88
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC--EEEE
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLFL 170 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lllL 170 (661)
+.+||+|++.++.... .. ..+++.+|+.+..+++++ +|| |||+.||++++.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEE
Confidence 9999999999864311 10 134566788777776664 599 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCC--------chHHHhhcCeEEEEeCCeE
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQP--------SSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~--------~~~i~~~~D~v~lL~~G~~ 225 (661)
| ||+|||+.+. ++++.+ .|.|+|++||.. .+......+.|..+..|+.
T Consensus 285 D-pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 9999998765 345554 489999999942 1234456678888888764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=198.58 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=75.3
Q ss_pred cc-ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 045930 144 WR-GISGGEKKRLSIALEIL---------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 144 ~~-~LSgGerqRvsIa~aL~---------~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~ 213 (661)
++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|+++|. . . .
T Consensus 262 ~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~ 333 (359)
T 2o5v_A 262 ASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---G 333 (359)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---T
T ss_pred hhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---c
Confidence 45 69999999999999999 8999999999999999999999999998874 699999994 3 3 8
Q ss_pred cCeEEEEeCCeEEEecCCCCh
Q 045930 214 FDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 214 ~D~v~lL~~G~~v~~G~~~~~ 234 (661)
+|++++|++|+++..|+++++
T Consensus 334 ~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 334 AALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp CSEEEEEETTEEEECCCTTTS
T ss_pred CCEEEEEECCEEEecCCHHHH
Confidence 999999999999999998764
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-24 Score=236.52 Aligned_cols=173 Identities=16% Similarity=0.110 Sum_probs=139.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe---ecc----------cccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK---KRR----------LDYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~---~~~----------~~~~~i~yv~Q 87 (661)
.++|+++ +.+.+||+++|+|||||||||||++|+|..+++ .|.|.++|+ +.. ..++.++|++|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 5699999 999999999999999999999999999998874 899999997 321 12467999999
Q ss_pred C-CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC
Q 045930 88 E-NIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ 166 (661)
Q Consensus 88 ~-~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ 166 (661)
+ +..++.+||.+|+.+.+...... .+ ......|. ...+|+|| ||++|| +.+|+
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~~-------~~---------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRDR-------GQ---------HVLLIMDS------LTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTT-------TC---------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC-------CC---------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCc
Confidence 5 56778889999998865431000 00 01111222 24599999 999999 88898
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh---c-CC-----EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 167 LLFLDEPTSGLDSAAAFFVVKILKNIAH---D-GR-----TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 167 lllLDEPtsGLD~~~~~~i~~~L~~la~---~-g~-----tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
+ |+|||+.....+.+.++++.+ + |+ ||++++||.+ ..++|++++|.+|+++..|+.+
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~ 340 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLA 340 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHH
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHH
Confidence 8 999999999999999999976 3 64 9999999975 5789999999999999998754
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-22 Score=209.41 Aligned_cols=129 Identities=15% Similarity=0.183 Sum_probs=106.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-c--ccCeEEEEecCCCCCCCCCHHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-L--DYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-~--~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
+++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|.++|.+.. . .++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-------------
Confidence 789999999999999999999999999999999999874 899999886411 0 112233321
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
.++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|+
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2356777777654568999999974 778899999998875
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-21 Score=200.65 Aligned_cols=183 Identities=16% Similarity=0.135 Sum_probs=119.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee-EEEECCeecc--cccCeEEEEecCCCCCCCCCH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG-NVLLNGKKRR--LDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV 97 (661)
..+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.... ...+++.++.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 46899999999999999999999999999999999987542 35 5544322111 01112222222211 122
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE-KKRLSIALEILTRPQLLFLDEPTS- 175 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe-rqRvsIa~aL~~~P~lllLDEPts- 175 (661)
.+++.... .+.++.++.++++++..++. ..+. . ..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~~-~-----~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-------IENGKFDQWFDELFGNDTFH-LYDS-F-----AEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EECC-C-----CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-------CCHHHHHHHHHHHhccCCEE-EECC-C-----CCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 23333211 11233444555555433331 1111 1 2478888 67777 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhc-CCEEEEEecCCc-h--------------------HHHhhcCeEEEEeCCeE
Q 045930 176 --G---LDS-AAAFFVVKILKNIAHD-GRTIISSIHQPS-S--------------------EVFALFDDLFLLSGGET 225 (661)
Q Consensus 176 --G---LD~-~~~~~i~~~L~~la~~-g~tvi~s~Hq~~-~--------------------~i~~~~D~v~lL~~G~~ 225 (661)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+.++||+|++|.+|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999875 999999999951 3 67889999999998874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-24 Score=212.86 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=109.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc------cccCeEEEEecCCCCCCCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR------LDYGGVAYVTQENIMLGTL 95 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~------~~~~~i~yv~Q~~~l~~~l 95 (661)
.-|+|||+++++|++++|+||||||||||+++|+|++ + |+|.+ |.+.. ..++.++|++|++.+++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4689999999999999999999999999999999987 3 66777 54321 1235689999987666543
Q ss_pred CH-HHHHH---HHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH-----HHHHhhCCC
Q 045930 96 TV-RETIA---YSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI-----ALEILTRPQ 166 (661)
Q Consensus 96 TV-~E~l~---~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI-----a~aL~~~P~ 166 (661)
+. .+++. +..... +.+ ...++++++...+. ..+ ..+|||||||++| +++++.+|+
T Consensus 84 ~~~~~~l~~~~~~~~~~---g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFY---GTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp HHTTCEEEEEEETTEEE---EEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred hhccchhhhhhcccccC---CCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 31 11111 111100 111 13466666654321 112 3599999999999 899999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-------cCCEEEEEecCCchHHHhhcCeEE
Q 045930 167 LLFLDEPTSGLDSAAAFFVVKILKNIAH-------DGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 167 lllLDEPtsGLD~~~~~~i~~~L~~la~-------~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
+++|||||+++|..+...+.+.|+++.+ .+...|+++|++ ++.....|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii 205 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHH
Confidence 9999999999999999999988887654 234455555553 34555554443
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-20 Score=218.86 Aligned_cols=158 Identities=27% Similarity=0.376 Sum_probs=122.5
Q ss_pred HHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCH------HHHHHHHHHH
Q 045930 52 DALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN------EEITDVIEEA 125 (661)
Q Consensus 52 ~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~------~~~~~~v~~~ 125 (661)
.|..+++++ ..++|.++|++... +..+||.|++.|...+.++..... ++. +...+.
T Consensus 386 ~C~g~rl~~---~~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 447 (916)
T 3pih_A 386 VCGGRRLNR---EALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEI-EKRLEF 447 (916)
T ss_dssp TTCSCCBCT---TGGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH-HHHHHH
T ss_pred hcccccCCh---HhcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH-HHHHHH
Confidence 444445555 36888888876421 345789999988655443221110 111 234567
Q ss_pred HHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Q 045930 126 ITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISS 202 (661)
Q Consensus 126 l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s 202 (661)
+..+||.+. .|+.++ +|||||||||.||++|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||++
T Consensus 448 L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 448 LVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 888999864 677775 599999999999999999887 999999999999999999999999998889999999
Q ss_pred ecCCchHHHhhcCeEEEE------eCCeEEEecCCCCh
Q 045930 203 IHQPSSEVFALFDDLFLL------SGGETVYFGEAKSA 234 (661)
Q Consensus 203 ~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~ 234 (661)
+||+ +.+ ..+|+|++| ++|++++.|++++.
T Consensus 523 tHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~ 558 (916)
T 3pih_A 523 EHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDEL 558 (916)
T ss_dssp CCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHH
T ss_pred eCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhh
Confidence 9996 344 569999999 89999999997654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-22 Score=211.70 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=98.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP 110 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 110 (661)
+++|+++||+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 7999999999999999999999999998762 231 458999999999888 99999864221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 111 SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 111 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
.+.+.....+.+.+.++.++ .+..++.+ ..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 12222223456778888887 55555555 36999999999999999999999999999999986
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=208.19 Aligned_cols=135 Identities=30% Similarity=0.429 Sum_probs=112.5
Q ss_pred CCCCHHHHHHHHHhcCCCCC---CC---HHHHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCC
Q 045930 93 GTLTVRETIAYSAHLRLPSN---MN---NEEITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRP 165 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P 165 (661)
..+||.|++.|...+.++.. .. .+++.+++ +.|+.+||... .|+.++ .|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCC
Confidence 35899999999877654321 00 03455566 45899999865 688775 59999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChh
Q 045930 166 --QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAP 235 (661)
Q Consensus 166 --~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 235 (661)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++ ++ ...+|+|++| .+|++++.|++++..
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HH-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HH-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999988899999999996 44 4679999999 799999999988753
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=203.04 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=70.8
Q ss_pred cccc-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 144 WRGI-SGGEKKRLSIALEILTRP--QLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 144 ~~~L-SgGerqRvsIa~aL~~~P--~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |+|||++||+| ++...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~--~~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA--QIAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH--HHHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3457 999999999999999999 99999999999999999999999999987 89999999996 355679999999
Q ss_pred eCC
Q 045930 221 SGG 223 (661)
Q Consensus 221 ~~G 223 (661)
.+|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 665
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=204.90 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=121.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhc
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHL 107 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l 107 (661)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.+++|++. .++.++. .++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~------------~vi~~~~ee~~----~~l~~~~---~~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE------------RAILFAYEESR----AQLLRNA---YSW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC------------CEEEEESSSCH----HHHHHHH---HTT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC------------CEEEEEEeCCH----HHHHHHH---HHc
Confidence 568999999999999999999999999998654 232 12456677642 1223322 111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 045930 108 RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA-----AA 182 (661)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~-----~~ 182 (661)
+.+. ++ +...|+.+..+..+ ..|||||+||+.+|+++..+|+++++| ||+|||.. .+
T Consensus 332 ----g~~~-------~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 332 ----GMDF-------EE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ----SCCH-------HH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ----CCCH-------HH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 1221 12 23467766666554 469999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCc---------hHHHhhcCeEEEEeCCe
Q 045930 183 FFVVKILKNIAHDGRTIISSIHQPS---------SEVFALFDDLFLLSGGE 224 (661)
Q Consensus 183 ~~i~~~L~~la~~g~tvi~s~Hq~~---------~~i~~~~D~v~lL~~G~ 224 (661)
..+.+.++.+++.|.|||+++|+.. ..+..++|+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999961 45678999999999886
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-21 Score=194.77 Aligned_cols=169 Identities=11% Similarity=0.098 Sum_probs=105.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
.+.+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.|
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~~ 77 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAEQ 77 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHhH
Confidence 467999999999999999999999999999999999975 222222 1245699999985 778899999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
++.+....... ..+.....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|+++++|||....|.
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 98875432210 101111123344455443 34445544 3699999999988 578889999999999888876
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHH-hhcCeEEEEeCCe
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVF-ALFDDLFLLSGGE 224 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~-~~~D~v~lL~~G~ 224 (661)
. +.++ .+.+|++++|+.. .+. .+++++ .+|+
T Consensus 149 ~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 149 E--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR 180 (245)
T ss_dssp H--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C---
T ss_pred H--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC
Confidence 3 2222 3789999999732 343 344444 5553
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-20 Score=222.89 Aligned_cols=170 Identities=22% Similarity=0.157 Sum_probs=118.3
Q ss_pred EEEEE-----EEEEeecCCcccccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE
Q 045930 3 LVWEE-----VTVVVPNFGSGPTRRLLNGLTGYAEP-------ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70 (661)
Q Consensus 3 l~~~~-----l~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~ 70 (661)
|+++| |+..+. .++.+++|+++.+++ |++++|+|||||||||||++| |++..
T Consensus 751 l~i~~~rHP~l~~~~~-----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~---------- 814 (1022)
T 2o8b_B 751 LELKGSRHPCITKTFF-----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV---------- 814 (1022)
T ss_dssp EEEEEECCCC-----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----------
T ss_pred EEEEeccccEEEEEec-----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----------
Confidence 66777 666542 135799999999987 999999999999999999999 87642
Q ss_pred CCeecccccCeEE-EEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCH
Q 045930 71 NGKKRRLDYGGVA-YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISG 149 (661)
Q Consensus 71 ~g~~~~~~~~~i~-yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSg 149 (661)
..++| ||||+.. .+||.|++. ..+|+.+..+... ..+|+
T Consensus 815 --------~aqiG~~Vpq~~~---~l~v~d~I~------------------------~rig~~d~~~~~~-----stf~~ 854 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC---RLTPIDRVF------------------------TRLGASDRIMSGE-----STFFV 854 (1022)
T ss_dssp --------HHTTTCCEESSEE---EECCCSBEE------------------------EECC--------------CHHHH
T ss_pred --------HhheeEEeccCcC---CCCHHHHHH------------------------HHcCCHHHHhhch-----hhhHH
Confidence 01244 8999753 455555441 1122222211111 24677
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEE-
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA-FFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETV- 226 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~-~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v- 226 (661)
+++ ++++|++++++|+++||||||+|+|+... ..+.+.|+.++++ |.++|++||++ +.+..++|++.+++ |++.
T Consensus 855 em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~~-g~~~~ 931 (1022)
T 2o8b_B 855 ELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVRL-GHMAC 931 (1022)
T ss_dssp HHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEEE-EEEEE
T ss_pred HHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceeec-CeEEE
Confidence 665 49999999999999999999999999985 5578899999876 99999999995 56777899988874 7877
Q ss_pred -EecCC
Q 045930 227 -YFGEA 231 (661)
Q Consensus 227 -~~G~~ 231 (661)
+.|++
T Consensus 932 ~~~~~~ 937 (1022)
T 2o8b_B 932 MVENEC 937 (1022)
T ss_dssp C-----
T ss_pred EEecCc
Confidence 45554
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-21 Score=221.27 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=121.3
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCceeeEEEECCeecc----cccCeEEEEecCCCCC
Q 045930 20 TRRLLNGLTG-YAEPARILAVMGPSGSGKSTLLDA--LAGRLSGNVVMTGNVLLNGKKRR----LDYGGVAYVTQENIML 92 (661)
Q Consensus 20 ~~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~--LaG~~~~~~~~~G~i~~~g~~~~----~~~~~i~yv~Q~~~l~ 92 (661)
..++|+|||+ .+++||+++|+||||||||||+++ ++|..+++ +|.|.++|++.. ...+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 3679999999 999999999999999999999999 78988753 799999997632 1235689999975422
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDE 172 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDE 172 (661)
++ +.+ .... . .+ ...++++.++|.+..++.+ +.|||| +|+++++||
T Consensus 101 ~~------l~~---~~~~-~-~~-----~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 101 GK------LFI---LDAS-P-DP-----EGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp TS------EEE---EECC-C-CS-----SCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEEC
T ss_pred Cc------EEE---EecC-c-cc-----chhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECC
Confidence 11 100 1000 0 00 0112334444444444444 246666 478999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH--------HHhhcCeEEEEeCCe
Q 045930 173 PTS-----GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE--------VFALFDDLFLLSGGE 224 (661)
Q Consensus 173 Pts-----GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~--------i~~~~D~v~lL~~G~ 224 (661)
||+ +||+..+..+.+.++++++.|+|||+++|++... ...+||+|++|++|+
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 998 5699999999999999988899999999997532 345699999999844
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-19 Score=209.35 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=113.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
.+.+++|+|+.+++|++++|+||||||||||||++++..-- ...| +|||++....+.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G----------------~~vpa~~~~~~~----- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIG----------------CFVPCESAEVSI----- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHT----------------CCBSEEEEEEEC-----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcC----------------CccccccccchH-----
Confidence 35789999999999999999999999999999999432100 0011 011110000000
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCC
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI--LTRPQLLFLDEPTSGL 177 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL--~~~P~lllLDEPtsGL 177 (661)
+++++..+|+.+. . .+++|+|++++..+|+++ +++|+++||||||+||
T Consensus 705 ----------------------~d~i~~~ig~~d~---l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 705 ----------------------VDCILARVGAGDS---Q-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp ----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred ----------------------HHHHHHhcCchhh---H-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 0011112222211 1 135888888888888888 9999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 178 DSAAAFFV-VKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 178 D~~~~~~i-~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
|+.....+ ..+++.++++ |+++|++||+. ++.+++|++..+.+|++...++.++..
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcEE
Confidence 99999888 6777888864 99999999994 678899999999999999988876644
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-20 Score=201.65 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=126.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc------------ccCeEEEEec
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL------------DYGGVAYVTQ 87 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~------------~~~~i~yv~Q 87 (661)
+.++|+++ +.+.+||+++|+||||||||||+++|+|..+++ .|.|.+.|++... ..+.+.++.|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 35699999 999999999999999999999999999998874 7999988864210 1245777777
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
.+. ...+.+..... ...+.+.....+ .+... .. ..+..+|+|| ||+++| +.+|++
T Consensus 134 ~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~-~l--d~~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 134 SDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL-MM--DSVTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp TTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE-EE--ETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH-HH--hhHHHHHHHH-HHHHHH---cCCCCc
Confidence 532 22222221100 000111111111 11110 00 1234699999 899999 688877
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh--cCC-----EEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAH--DGR-----TIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~--~g~-----tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||+.....+.+.++++.+ +|. ||++++||.. ..+||+++++.+|+++.+|+.++
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHH
Confidence 999999999999999999975 477 8999999975 56799999999999999987544
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=158.93 Aligned_cols=80 Identities=28% Similarity=0.358 Sum_probs=72.4
Q ss_pred ccccCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 045930 144 WRGISGGEKKRLSIA------LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 144 ~~~LSgGerqRvsIa------~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++ ++.+.||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 467999999999886 899999999999999999999999999999999987799999999996 467899999
Q ss_pred EEE--eCCeE
Q 045930 218 FLL--SGGET 225 (661)
Q Consensus 218 ~lL--~~G~~ 225 (661)
++| .+|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 46643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-19 Score=181.21 Aligned_cols=133 Identities=17% Similarity=0.306 Sum_probs=98.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.+|+|+| +++|++++|+||||||||||+++|+|.+++. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 5899999 8999999999999999999999999988651 2799999886542 233321100
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
. .. +.+|++. ..+ |++||++|..+|+++++|||| |+.+
T Consensus 75 -----v------~q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~ 112 (261)
T 2eyu_A 75 -----V------NQ-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 112 (261)
T ss_dssp -----E------EE-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHH
T ss_pred -----e------eH-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHH
Confidence 0 00 0223321 113 899999999999999999999 9888
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 182 ~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
...++ +. ++.|.+|++++|++. ....+|+++.|..
T Consensus 113 ~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 113 VETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 66543 33 456999999999964 6788999887753
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-19 Score=178.19 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=93.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----ceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHH
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNV----VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYS 104 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~----~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 104 (661)
+-+++||+++|+||||||||||+++|+|...+.. ...|.+.+++... ...+.+++++|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~-- 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHIY-- 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTEE--
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcEE--
Confidence 5799999999999999999999999999543210 0123444444321 000112222222211111 1222111
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCCC
Q 045930 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE-KKRLSIALEILT-------RPQLLFLDEPTSG 176 (661)
Q Consensus 105 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe-rqRvsIa~aL~~-------~P~lllLDEPtsG 176 (661)
+ .+..++++ ++++..+.+++. +|+++++||||++
T Consensus 96 --------------------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 96 --------------------------V------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp --------------------------E------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred --------------------------E------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1 01234443 334666666666 9999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHhc-CCEEEEEecCCc---hHHHhhcCeEEEEeCCe
Q 045930 177 LDSA-------A-----AFFVVKILKNIAHD-GRTIISSIHQPS---SEVFALFDDLFLLSGGE 224 (661)
Q Consensus 177 LD~~-------~-----~~~i~~~L~~la~~-g~tvi~s~Hq~~---~~i~~~~D~v~lL~~G~ 224 (661)
+|+. . ..++++.|++++++ |.|||+++|... ..+...+|+++.|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 2 23788888888765 999999999532 23778899999998753
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-20 Score=186.62 Aligned_cols=145 Identities=19% Similarity=0.191 Sum_probs=114.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCC--CCCCHHHHHHHHHhcC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML--GTLTVRETIAYSAHLR 108 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~l~ 108 (661)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|++++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 578999999999999999999999997542 479999998776 56899998765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE----KKRLSIALEILTRPQLLFLDEPTSG-------L 177 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe----rqRvsIa~aL~~~P~lllLDEPtsG-------L 177 (661)
.+ .....+++.+.++.+++.+..+..+ ..+|+|| +||+++|++++.+|+++++||||++ |
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 1112345677788888877666543 3589996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HhcCCEEEEEecCC
Q 045930 178 DSAAAFFVVKILKNI-AHDGRTIISSIHQP 206 (661)
Q Consensus 178 D~~~~~~i~~~L~~l-a~~g~tvi~s~Hq~ 206 (661)
|+.....+.+.+++. .++|+|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999886 45699999999974
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.6e-18 Score=198.89 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=100.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++.|++|||+.+++|++++|+||||||||||||++++..-.. ..|. ..... -+.+..-+.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~------~vpa~---~~~i~~~d~i~~~i---- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS------YVPAE---EATIGIVDGIFTRM---- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC------CBSSS---EEEEECCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc------cccch---hhhhhHHHHHHHhC----
Confidence 467999999999999999999999999999999998642100 0110 00000 01111112222222
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
|+.+..+... ..+|+|++|++.|+++ +++|+++||||||+|||+
T Consensus 724 ------------------------------g~~d~l~~~~-----stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 724 ------------------------------GAADNIYKGR-----STFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred ------------------------------ChHHHHHHhH-----HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 2222112211 3589999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHh-cCCEEEEEecCCchHHHhhcCeE
Q 045930 180 AAAFFVV-KILKNIAH-DGRTIISSIHQPSSEVFALFDDL 217 (661)
Q Consensus 180 ~~~~~i~-~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v 217 (661)
.....+. .+++.+++ .|.|||++||++ ++.+++|+.
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 9999997 77888876 599999999995 466677654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=193.35 Aligned_cols=111 Identities=26% Similarity=0.423 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCCcc-ccccccCccccccCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 045930 117 EITDVIEEAITEMGLEDC-ADRLIGNWHWRGISGGEKKRLSIALEILTRP--QLLFLDEPTSGLDSAAAFFVVKILKNIA 193 (661)
Q Consensus 117 ~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P--~lllLDEPtsGLD~~~~~~i~~~L~~la 193 (661)
++.++++ .++.+||.+. .++.++ .|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3455665 5889999865 687775 59999999999999999999 5999999999999999999999999998
Q ss_pred hcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEecCCCChh
Q 045930 194 HDGRTIISSIHQPSSEVFALFDDLFLL------SGGETVYFGEAKSAP 235 (661)
Q Consensus 194 ~~g~tvi~s~Hq~~~~i~~~~D~v~lL------~~G~~v~~G~~~~~~ 235 (661)
+.|.|||+++|++ + +.+.+|+|++| .+|++++.|++++..
T Consensus 429 ~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8899999999996 3 56789999999 799999999987653
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-18 Score=198.93 Aligned_cols=147 Identities=24% Similarity=0.204 Sum_probs=105.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS-GNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
++.+++|+|++ |++++|+||||||||||||+|+|... +. .|.+. ......+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------ehhccceeeHHH---hhccCCHH
Confidence 36799999998 99999999999999999999999752 21 34321 112235677766 45556666
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI--LTRPQLLFLDEP--- 173 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL--~~~P~lllLDEP--- 173 (661)
|++. .++|+|+++++.+++++ +++|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 5542 13789999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 174 TSGLDSAAA-FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 174 tsGLD~~~~-~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|++||..+. ..+++.|++ .|.++|++||++ ++.+++ .--+.++++.....
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEECC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEEc
Confidence 999998875 567777766 589999999995 455555 22234455444433
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-18 Score=198.34 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=109.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
++.+++|+|+. ++|++++|+||||||||||||+|+|..... ..| .........++++.| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccchhcccceeHHH---HHhhCCHHH
Confidence 35799999999 999999999999999999999999964210 012 111111223555544 455556665
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
++... + ..+|+|++ +++.+...+++|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 54321 0 12566655 45555667999999999999999999
Q ss_pred HHHHHH-HHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 180 AAAFFV-VKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 180 ~~~~~i-~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
.....+ .+.++.++++ |.++|++||++ ++..++|++..+.+|++.+....
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 887776 7888999874 99999999996 45678998877888887665543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-19 Score=185.77 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=87.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCceeeEEEECCeecc--cccCeEEEEecCCCCCCCCCH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR-LSGNVVMTGNVLLNGKKRR--LDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~-~~~~~~~~G~i~~~g~~~~--~~~~~i~yv~Q~~~l~~~lTV 97 (661)
+.+++|+++++ +|+||||||||||+|+|+|. ..+ .+| +.++|.+.. ...+.+++++|++.....+||
T Consensus 11 ~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv 80 (301)
T 2qnr_A 11 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80 (301)
T ss_dssp -------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEE
T ss_pred EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEeeEEEEecCCCcccCcch
Confidence 67999999998 99999999999999999997 544 367 777776532 123458999999888888999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-C
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS-G 176 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts-G 176 (661)
.|+..+..... ..+..+..++.+ .+..+..+ +++|||||||+.+|++++ ++++||||+ |
T Consensus 81 ~Dt~g~~~~~~-----~~e~~~~l~~~l------~~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 81 VDTPGYGDAIN-----CRDCFKTIISYI------DEQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEC----------------CTTHHHHH------HHHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred hhhhhhhhhcC-----cHHHHHHHHHHH------HHHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 99987754321 001111122221 12234444 469999999999888875 999999998 5
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCc
Q 045930 177 LDSAAAFFVVKILKNIAHD-GRTIISSIHQPS 207 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~ 207 (661)
||+... +.++++.++ +.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 566666654 788999999953
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-18 Score=184.68 Aligned_cols=166 Identities=20% Similarity=0.163 Sum_probs=100.9
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCC-ceeeE-EEECCeecccccCeEEEEecCCCCCCCCCH
Q 045930 23 LLNGL-TGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNV-VMTGN-VLLNGKKRRLDYGGVAYVTQENIMLGTLTV 97 (661)
Q Consensus 23 iL~~v-s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~--~~~~-~~~G~-i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV 97 (661)
.|+++ ++.+++|++++|+||||||||||++.|++.. ++.. ...|+ |.+++... ..++++++++|+..+++. ++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~-~~~~~i~~i~q~~~~~~~-~v 196 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EV 196 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC-CCHHHHHHHHHTTTCCHH-HH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC-CCHHHHHHHHHHcCCCHH-HH
Confidence 45665 6899999999999999999999999999986 3310 01256 66666432 112234445554433222 33
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh-------hCCCEEEE
Q 045930 98 RETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL-------TRPQLLFL 170 (661)
Q Consensus 98 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~-------~~P~lllL 170 (661)
.||+.+.. . --|.+++|++.++++++ .+|+++++
T Consensus 197 ~~ni~~~~-------------------------------~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 197 LKHIYVAR-------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp GGGEEEEE-------------------------------C--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred hhCEEEEe-------------------------------c--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 33322110 0 01456677777777777 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 171 DEPTSGLDSAA------------AFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 171 DEPtsGLD~~~------------~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||+++|+.. ..++++.|++++++ |+|||+++|... .....++......+|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 99999999852 35677777887764 899999999853 4544566666777787765554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-18 Score=178.20 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=106.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----------ccCeEEEEecCCCCCCCCCHHHHH
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----------DYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
+|++++|+||||||||||+++|+|++++. .|+|.++|.+... .+..++|++|++.+.|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999998774 7999999876421 123589999999888999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
.++.... .. ..+++..|+.+..+.. ++..++||++|||+++.+|+.++| +||+.+
T Consensus 178 ~~~~~~~----~d--------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARG----YD--------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHT----CS--------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCC----CC--------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 8653210 00 0122333443322222 455669999999999999994444 455555
Q ss_pred HHHHHHHHHHHHhc-CCEEEEEecCC
Q 045930 182 AFFVVKILKNIAHD-GRTIISSIHQP 206 (661)
Q Consensus 182 ~~~i~~~L~~la~~-g~tvi~s~Hq~ 206 (661)
..++++.++++.++ |.|+|++||+.
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 55677777887765 89999999984
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=165.88 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=105.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRL 109 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~ 109 (661)
-+++|++++|+||||||||||++.+++... .|++. .|.+.. ....+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~-~~~~v~~~~~e~~~---~~~~~r~~---~~g- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDL-LEVGEL-PTGPVIYLPAEDPP---TAIHHRLH---ALG- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCT-TCCCCC-CCCCEEEEESSSCH---HHHHHHHH---HHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCc-CCCccC-CCccEEEEECCCCH---HHHHHHHH---HHH-
Confidence 489999999999999999999999998543 34442 243321 12458888877532 01112221 111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q 045930 110 PSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS--GLDSAAA---FF 184 (661)
Q Consensus 110 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts--GLD~~~~---~~ 184 (661)
..... ...+++++.+++.+..+..+ ..+|+||++++ ++++.+|+++++||||+ ++|.... .+
T Consensus 92 -~~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 92 -AHLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp -TTSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -hhcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 11122 23566788888877766554 45999998875 68889999999999999 9997544 88
Q ss_pred HHHHHHHHHh-cCCEEEEEecCC
Q 045930 185 VVKILKNIAH-DGRTIISSIHQP 206 (661)
Q Consensus 185 i~~~L~~la~-~g~tvi~s~Hq~ 206 (661)
+++.|+++++ .|+|||+++|+.
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 8899999975 599999999995
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-18 Score=197.31 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=112.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec--------ccccCeEEEEecCCCCCCCCCHHHH
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR--------RLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~--------~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.++. +||+|||||||||||++|+|+..|. .+|.|+++|.+. ...++.++|++|+..+++.+||+|+
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~ 117 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKE 117 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTT
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHH
Confidence 44443 9999999999999999999998662 389999999763 1234679999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC------C
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP------T 174 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP------t 174 (661)
+.+......... -++++ +++.++.+...+|+++++||| |
T Consensus 118 i~~~~~~~~~~~----------------~~~s~-------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 118 INKAQNAIAGEG----------------MGISH-------------------ELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp HHHHHHHHHCSS----------------SCCCS-------------------CCEEEEEEESSSCCEEEEECCC------
T ss_pred HHHHHHHhcCCc----------------cccch-------------------HHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 987643210000 01111 111111222348999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCc------hHHHhh-----cCeEEEEeCCeEEEecCCCChhHHH
Q 045930 175 SGLDSAAAFFVVKILKNIAHD--GRTIISSIHQPS------SEVFAL-----FDDLFLLSGGETVYFGEAKSAPTFF 238 (661)
Q Consensus 175 sGLD~~~~~~i~~~L~~la~~--g~tvi~s~Hq~~------~~i~~~-----~D~v~lL~~G~~v~~G~~~~~~~~f 238 (661)
+|||+..+.++.+.++++.++ +.++++++|+.. ..+... ...|.++.++..+..|+.+++.+..
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 999999999999999997543 678888999853 112222 2457888999988888766555433
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-17 Score=164.65 Aligned_cols=169 Identities=15% Similarity=0.090 Sum_probs=107.8
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 21 RRLLNGLTG-YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 21 ~~iL~~vs~-~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+ +..+. +..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~--------------~~~~~------~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIY--------------VTTEE------SRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEE--------------EESSS------CHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEE--------------EEccc------CHHH
Confidence 457888885 8999999999999999999999999987543 1344433 22211 1111
Q ss_pred HHHHHHhcCCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC--EEEEeCCCC
Q 045930 100 TIAYSAHLRLPSNMNNEEIT--DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ--LLFLDEPTS 175 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~--lllLDEPts 175 (661)
.......... ........ ..++.....++ ... .....|.+|.++...+.....+|+ ++++||||+
T Consensus 66 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 66 IIRQAKQFNW--DFEEYIEKKLIIIDALMKEKE-----DQW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp HHHHHHHTTC--CCGGGBTTTEEEEECCC---------CTT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred HHHHHHHhcc--hHHHHhhCCEEEEeccccccC-----cee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 1111111110 00000000 00000000000 000 012358999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHhc-CCEEEEEecCCc-------hHHHhhcCeEEEEeCC
Q 045930 176 GL--DSAAAFFVVKILKNIAHD-GRTIISSIHQPS-------SEVFALFDDLFLLSGG 223 (661)
Q Consensus 176 GL--D~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~-------~~i~~~~D~v~lL~~G 223 (661)
++ |+.....+++.|++++++ |.|||+++|+.. ..+.++||++++|+..
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 87 999999999999999764 899999999962 3488899999999754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-16 Score=170.28 Aligned_cols=127 Identities=21% Similarity=0.306 Sum_probs=88.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc-cCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD-YGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
...+|++++|+|||||||||||++|+|.+++. ..|.|...+.+.... ....++++|.......+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~------------- 183 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDTL------------- 183 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBS-------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeeccccC-------------
Confidence 67899999999999999999999999988652 145655433332211 12234444433211111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~ 188 (661)
+-.+ +||++|..+|++|++|||| |..+ ++.
T Consensus 184 ---------------------------------------~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~ 213 (356)
T 3jvv_A 184 ---------------------------------------GFSE----ALRSALREDPDIILVGEMR---DLET----IRL 213 (356)
T ss_dssp ---------------------------------------CHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHH
T ss_pred ---------------------------------------CHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHH
Confidence 1111 8999999999999999999 6555 444
Q ss_pred HHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 045930 189 LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGG 223 (661)
Q Consensus 189 L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G 223 (661)
+.++++.|.+|++|+|+.+ .+ +.+||++.|..|
T Consensus 214 ~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 214 ALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 5556777999999999974 34 889999988654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-18 Score=165.73 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=101.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP 110 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 110 (661)
|++++|+||||||||||+++|+|.++ . +| |.++|.... ...+.+||++|+. .... +++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc-
Confidence 78999999999999999999999875 3 57 777765432 2357799999974 1111 111 11110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHH
Q 045930 111 SNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRL-SIAL---EILTRPQLLFLDE--PTSGLDSAAAF 183 (661)
Q Consensus 111 ~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRv-sIa~---aL~~~P~lllLDE--PtsGLD~~~~~ 183 (661)
+..+ ..+..+|. ....+|+|||+++ ++++ |++.+|+++|+|| |+..+|...
T Consensus 67 -------------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~-- 124 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF-- 124 (189)
T ss_dssp -------------------CCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH--
T ss_pred -------------------cCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH--
Confidence 1111 01123332 2245999999988 4444 5789999999999 899998865
Q ss_pred HHHHHHHHHHhcCCEEEE----EecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 184 FVVKILKNIAHDGRTIIS----SIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 184 ~i~~~L~~la~~g~tvi~----s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
++.|+++.++..++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 125 --~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 125 --IQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred --HHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4555555444445553 238852 3567888888889887643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-17 Score=162.46 Aligned_cols=176 Identities=14% Similarity=0.063 Sum_probs=98.4
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCCceeeEEEECCeeccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL-----SGNVVMTGNVLLNGKKRRL 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-----~~~~~~~G~i~~~g~~~~~ 77 (661)
|+++|+++.+. ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .+ ..|.+...+... .
T Consensus 4 l~~~~~~~~~~-------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~~-~ 70 (210)
T 1pui_A 4 LNYQQTHFVMS-------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLFE-V 70 (210)
T ss_dssp -------CEEE-------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-E
T ss_pred hhhhhhhheee-------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEEE-e
Confidence 67889988774 247787 889999999999999999999999999986 32 245443211100 0
Q ss_pred ccCeEEEEecCCCC----CCCCC---HHHHHHHHHhc-CCC--------CCCCHHHHHHHHHHHHHHcCCCcc-cccccc
Q 045930 78 DYGGVAYVTQENIM----LGTLT---VRETIAYSAHL-RLP--------SNMNNEEITDVIEEAITEMGLEDC-ADRLIG 140 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l----~~~lT---V~E~l~~~~~l-~~~--------~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg 140 (661)
. ..+-.+ +.+.+ .+.-. .+..+....+. +.. .........+.+.++++..++... ..+++
T Consensus 71 ~-~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~- 147 (210)
T 1pui_A 71 A-DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA- 147 (210)
T ss_dssp E-TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG-
T ss_pred c-CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc-
Confidence 0 001111 11110 00000 11222221110 000 000011222345566677776543 23444
Q ss_pred CccccccCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 045930 141 NWHWRGISGGEKKR-LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRT 198 (661)
Q Consensus 141 ~~~~~~LSgGerqR-vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~t 198 (661)
..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.+
T Consensus 148 ----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 148 ----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 3589999999 89999999999999999999999999999999999998766644
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.5e-17 Score=175.74 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=94.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeE
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGV 82 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i 82 (661)
|.++||++.+. .+.+++|+|++| +|+||||||||||+|+|+|...+... .|.+.+++.+ ....+.+
T Consensus 12 l~~~~l~~~y~------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 12 VGFANLPNQVY------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ---CCCCCCTT------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred EEEEecceeEC------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 45556555442 357999999998 99999999999999999998753211 2222222211 1123458
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 83 AYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 83 ~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
++++|++.+++.+||.||+.+..... ..+....+.+.++ ..++.+++||+.||++++
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 99999988888999999988764321 1111111111111 135667788999999999
Q ss_pred hCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 163 TRPQ---LLFLDEPT-SGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 163 ~~P~---lllLDEPt-sGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
.+|+ +|++|||| .|||+... +.++.+.. +.+||+++|..
T Consensus 135 ~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 135 PDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred cCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 9999 99999999 69998873 44555544 77888888874
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-15 Score=147.84 Aligned_cols=154 Identities=21% Similarity=0.171 Sum_probs=101.8
Q ss_pred ceeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 22 RLLNGLT-GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 22 ~iL~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
..|+++. +-+++|++++|+||||||||||++.|++ .. .+ .+.|+..++.+ +.. .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~----~~--------------~v~~i~~~~~~----~~~-~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS----GK--------------KVAYVDTEGGF----SPE-R 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH----CS--------------EEEEEESSCCC----CHH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc----CC--------------cEEEEECCCCC----CHH-H
Confidence 4577776 4799999999999999999999999998 21 12 23444443311 221 1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE--KKRLSIALEILTR-PQLLFLDEPTSGL 177 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe--rqRvsIa~aL~~~-P~lllLDEPtsGL 177 (661)
+.-... .. .... +++++.+. + ...++++ ++++..+++++.+ |+++++||||+++
T Consensus 62 ~~~~~~-~~--~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQMAE-TR--GLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHH-TT--TCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHH-hc--CCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 111111 00 1111 11222211 1 1245554 5788888999986 9999999999999
Q ss_pred CHH--------HHHHHHHHHHHHHhc-CCEEEEEecCCch------------HHHhhcCeEEEEeCC
Q 045930 178 DSA--------AAFFVVKILKNIAHD-GRTIISSIHQPSS------------EVFALFDDLFLLSGG 223 (661)
Q Consensus 178 D~~--------~~~~i~~~L~~la~~-g~tvi~s~Hq~~~------------~i~~~~D~v~lL~~G 223 (661)
|.. ...++++.|++++++ |.|||+++|.... .+...+|.+++|+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 973 235567778888775 8999999998541 477899999999754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-18 Score=170.04 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=113.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM 113 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 113 (661)
|++++|+||||||||||+++|++. ..|.+.++|...... ...++++|.....+.+|+++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFL---- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHH----
Confidence 789999999999999999999973 257888888653221 234667776544455678888776543210
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---cccccc--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 045930 114 NNEEITDVIEEAITEMGLEDCADRLIGN---WHWRGI--SGGEKKRLSIAL------EILTRPQLLFLDEPTSGLDSAAA 182 (661)
Q Consensus 114 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~---~~~~~L--SgGerqRvsIa~------aL~~~P~lllLDEPtsGLD~~~~ 182 (661)
. -+-....+...+. ...+.+ |+|++|++.++. +++.+|+...+|| |||+...
T Consensus 71 -------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 71 -------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0 0111111111000 001235 888888888888 9999999988884 8999888
Q ss_pred HHHHHHHHHHHhcCCEEEEEecC-CchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 183 FFVVKILKNIAHDGRTIISSIHQ-PSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 183 ~~i~~~L~~la~~g~tvi~s~Hq-~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
.. .+.++.+.+.+.+||.++|+ + +++.+.||+|+ ++|+++..|+++.
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC-----
T ss_pred HH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCc
Confidence 88 88888886668899999998 6 47889999999 9999999998754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-16 Score=158.62 Aligned_cols=148 Identities=20% Similarity=0.200 Sum_probs=97.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCeEEEEecCCCCCCCCCH----HHHHH
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGGVAYVTQENIMLGTLTV----RETIA 102 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTV----~E~l~ 102 (661)
.-..++|++++|+||||||||||+++|+|..++. ...|.|.+++.+... .++.++|++|++..++.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 3457899999999999999999999999998752 258889888865432 23568999997655544443 22211
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 045930 103 YSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182 (661)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~ 182 (661)
+. |+ ..+.| +++ +.+++..++++||| ||+.++
T Consensus 89 ~~-----------------------------------~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VF-----------------------------------GN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ET-----------------------------------TE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HH-----------------------------------hc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 10 10 01122 121 34556668999999 999999
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHHH
Q 045930 183 FFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFF 238 (661)
Q Consensus 183 ~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~f 238 (661)
.++.+.+. ++.||++++|++ .++.+ |+ +.+| .++++++..-+
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 99998876 589999999996 34444 42 5666 35554444433
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=136.52 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=68.0
Q ss_pred ccccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 045930 144 WRGISGGEKKRLSIALEILT----RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL 219 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~----~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l 219 (661)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++ .....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999975 4699999999999999999999999999875 46899999994 57789999997
Q ss_pred Ee--CCe
Q 045930 220 LS--GGE 224 (661)
Q Consensus 220 L~--~G~ 224 (661)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 564
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-17 Score=157.03 Aligned_cols=150 Identities=15% Similarity=0.029 Sum_probs=95.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cccCeEEEEecCCCCCCCCCHHHHHHHHHh
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDYGGVAYVTQENIMLGTLTVRETIAYSAH 106 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 106 (661)
.+++|++++|+||||||||||+++|+|.. ..|.|.++|.+.. ...+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 37899999999999999999999999982 2689999986531 11234577777543 45788998876543
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccc--cccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 045930 107 LRLPSNMNNEEITDVIEEAITEMGLEDCA--DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFF 184 (661)
Q Consensus 107 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~ 184 (661)
.....+. ...++.+++..++.... +.. +..+|+|++||+.++|++..+|+++ +|+.....
T Consensus 78 ~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~ 139 (191)
T 1zp6_A 78 RYAKEGY-----FVILDGVVRPDWLPAFTALARP-----LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVAD 139 (191)
T ss_dssp HHHHTSC-----EEEECSCCCTTTTHHHHTTCSC-----EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHH
T ss_pred HHhccCC-----eEEEeccCcHHHHHHHHhcCCC-----eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHH
Confidence 2100000 00011111112222222 111 2359999999999999999999876 68887777
Q ss_pred HHHHHHHHHhcCCEEEEEec
Q 045930 185 VVKILKNIAHDGRTIISSIH 204 (661)
Q Consensus 185 i~~~L~~la~~g~tvi~s~H 204 (661)
+.+.++.+...+..+|.+++
T Consensus 140 ~~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 140 LHSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHHHTTCCGGGGGGEEECTT
T ss_pred HHHHHhccCcccccEEECCC
Confidence 77776665433334444443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-15 Score=161.37 Aligned_cols=169 Identities=15% Similarity=0.146 Sum_probs=112.3
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH
Q 045930 21 RRLLNGLTGYAEPARI--LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|....... .....+.++|++|++.+++.+||.
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~-~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQ-PGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCC-ccceEeeEEEEeecCccccccchh
Confidence 34 9999999999999 99999999999999999999841 232111101 111234699999999888899999
Q ss_pred HHHHHHHhcCCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccccc------CccccccCHHHHHHHHHHH
Q 045930 99 ETIAYSAHLRLPSNMNNE--------EITDVIEEAITEM-GLED----CADRLIG------NWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~d~~vg------~~~~~~LSgGerqRvsIa~ 159 (661)
||+.++.. .... ..++..++.++.. ++.. ..|+.+. .+..++++-.+ +.|++
T Consensus 101 D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk 171 (427)
T 2qag_B 101 STVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMK 171 (427)
T ss_dssp EEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHH
T ss_pred hhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHH
Confidence 99876532 1111 1234455566654 5432 2233211 00113577666 78999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCEEEEEecC
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKN-IAHDGRTIISSIHQ 205 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~-la~~g~tvi~s~Hq 205 (661)
+|..+++++++||||..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 172 ~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 172 KLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999999986 87789988887754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.3e-17 Score=174.83 Aligned_cols=176 Identities=15% Similarity=0.045 Sum_probs=106.2
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCcee----eEEEECCeecccccCeEEEEecCCCCCCCCC
Q 045930 23 LLNGLTGYAEP--ARILAVMGPSGSGKSTLLDALAGRLSGNVVMT----GNVLLNGKKRRLDYGGVAYVTQENIMLGTLT 96 (661)
Q Consensus 23 iL~~vs~~i~~--Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~----G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lT 96 (661)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++. + |++.+++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-----------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-----------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-----------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-----------CCcccCChhH
Confidence 45779999999 9999999999999999999999998763 5 5554421100 0011111112
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc--CCCccccccccCccccccCHHHHHHHHHHHHHh-hCCCEEEEeC-
Q 045930 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEM--GLEDCADRLIGNWHWRGISGGEKKRLSIALEIL-TRPQLLFLDE- 172 (661)
Q Consensus 97 V~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~-~~P~lllLDE- 172 (661)
. +++.+... +....-..+.+.+ +..+..++.+ ..+|+|++||..+++++. .+|++++|||
T Consensus 223 ~-~~I~~~~q----------~~~~~~~t~~~nl~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQ----------RYIDYAVRHSHKIAFIDTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHH----------HHHHHHHHHCSSEEEESSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHH----------HHHHHHHhccCCEEEEeCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 2 33433211 0000000000111 0011112211 246777788888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 173 --PT------SGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 173 --Pt------sGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
|+ .++|...+..+.+.|+++.+ .|.+|++++|. ++..+++|++.++++ ++..|..+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~~~i~~i~~--~l~~~~~~ 351 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYNQVKAVIEK--VLNEEEIS 351 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHHHHHHHHHH--HTSCCCCS
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHH--Hhcccchh
Confidence 65 58999999999999999865 48999999875 366777887777653 33344443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-17 Score=162.96 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=99.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCceeeEEEECCeeccc-ccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALA---GRLSGNVVMTGNVLLNGKKRRL-DYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~i~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
++++++|+||||||||||+++|+ |...+ ..|+|..+|.+... ....+.+++|+..+++..|+.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999 98765 36877776543211 1123455677777888889999998754210
Q ss_pred C-----CCCCCHHHHHHHHHHHHH--HcC------------CCccccccccCccccccCHHHHHHHHHHHHH-hhCCCEE
Q 045930 109 L-----PSNMNNEEITDVIEEAIT--EMG------------LEDCADRLIGNWHWRGISGGEKKRLSIALEI-LTRPQLL 168 (661)
Q Consensus 109 ~-----~~~~~~~~~~~~v~~~l~--~lg------------L~~~~d~~vg~~~~~~LSgGerqRvsIa~aL-~~~P~ll 168 (661)
. -.+.+... ..++.+.+ ..+ ++...++.+ ..+|| |+ +++ +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCccc
Confidence 0 00111111 12222221 222 223334444 35898 66 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhcC
Q 045930 169 FLD----EPTSGLDSAAAFFVVKILKNIAHDG 196 (661)
Q Consensus 169 lLD----EPtsGLD~~~~~~i~~~L~~la~~g 196 (661)
+|| |||+|||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999987653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.9e-15 Score=157.55 Aligned_cols=130 Identities=16% Similarity=0.258 Sum_probs=95.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-ccCeEEEEecCCCCCCCCCHHHHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-DYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.+... .+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 7899999999999999999999999988651 16899776655432 234567787741
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
+|++. ..+ +.+|+.+|..+|+++++|||+ |..+
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 22211 124 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 045930 182 AFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLS 221 (661)
Q Consensus 182 ~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~ 221 (661)
... .++. +..|.+|+.|+|+. ++.+.+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 443 3443 45689999999995 3777888886653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-14 Score=153.41 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=99.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-cc--ccCeEEEEe-cCCCCCCCCCHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RL--DYGGVAYVT-QENIMLGTLTVRE 99 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~--~~~~i~yv~-Q~~~l~~~lTV~E 99 (661)
++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|.++|... .. .++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 39999999999999999999999999999999999874 89999998531 11 346688988 65431
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
+++++...|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222355566666777899999999986
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 045930 180 AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGE 224 (661)
Q Consensus 180 ~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~ 224 (661)
.++.+.|+.+...+.|++.++|..+ ....+||+..+..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455667777554568899999953 778899999887664
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-14 Score=150.49 Aligned_cols=139 Identities=24% Similarity=0.190 Sum_probs=99.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCCceeeEEEEC-Ceecc-cccCeEEEEecCCCCCCCCCHHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS-GNVVMTGNVLLN-GKKRR-LDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~-~~~~~~G~i~~~-g~~~~-~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
-+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|.++ |.... .....+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35666664 4899999999999999999999999987 6 48999887 65432 23467999999999999999998
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
+ . + ...+.++..+.+.++++.+|+.+..|.... ++| ||+||++||+++ ++.
T Consensus 281 ~---~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl---------------i~~ 331 (358)
T 2rcn_A 281 F---G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA---------------IAE 331 (358)
T ss_dssp C---C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS---------------SCH
T ss_pred h---h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC---------------CCH
Confidence 4 1 1 135566777788899999999988888775 599 999999999764 344
Q ss_pred HHHHHHHHHHHHHHh
Q 045930 180 AAAFFVVKILKNIAH 194 (661)
Q Consensus 180 ~~~~~i~~~L~~la~ 194 (661)
.-.....++++++++
T Consensus 332 ~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 332 TRFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 444445566666643
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.4e-14 Score=139.44 Aligned_cols=158 Identities=16% Similarity=0.242 Sum_probs=88.2
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCC--ceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH
Q 045930 24 LNGLT-GYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNV--VMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 24 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~~--~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
|+.+- +-+++|++++|+||||||||||++.|++ ..++.. ...|.+.++ -++.+ ...
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~---------------~~~~~----~~~ 73 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID---------------TEGTF----RPE 73 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE---------------SSSCC----CHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE---------------CCCCc----CHH
Confidence 44433 5799999999999999999999999999 343210 012333333 33211 111
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 045930 99 ETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR-LSIALEIL--TRPQLLFLDEPTS 175 (661)
Q Consensus 99 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR-vsIa~aL~--~~P~lllLDEPts 175 (661)
+......++. ...+ ++++.+.+ .+..+..+... +.-+.+++ .+|+++++|||++
T Consensus 74 ~~~~~~~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 74 RLLAVAERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1111111111 1111 11221110 11245555432 33344444 4799999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHhc-CCEEEEEecCCchH------------------HHhhcCeEEEEeCC
Q 045930 176 GLDSA-------A-----AFFVVKILKNIAHD-GRTIISSIHQPSSE------------------VFALFDDLFLLSGG 223 (661)
Q Consensus 176 GLD~~-------~-----~~~i~~~L~~la~~-g~tvi~s~Hq~~~~------------------i~~~~D~v~lL~~G 223 (661)
.+|+. . ...+++.|++++++ |.|||+++|..... +..++|.+++|+.|
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 34566777777765 99999999964311 22379999999865
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-17 Score=172.22 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=101.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC-----CceeeEEEECCeecccc--------------------cCeEEEE---
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGN-----VVMTGNVLLNGKKRRLD--------------------YGGVAYV--- 85 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~-----~~~~G~i~~~g~~~~~~--------------------~~~i~yv--- 85 (661)
=++++|+|+||||||||||.|.|..++. ....|+|.++|.+.... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999986210 11368888888764211 1224555
Q ss_pred ecCCCCCCCCCHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh
Q 045930 86 TQENIMLGTLTVRETIAYSAHLRLPSNM---NNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL 162 (661)
Q Consensus 86 ~Q~~~l~~~lTV~E~l~~~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~ 162 (661)
+|+..+++..+|.||..++......... .......+++.++..+++.+..++.. ++|+||+||+..+++++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 4655555566666665432000000000 00000011222333445555444433 58999999999989999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFD 215 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D 215 (661)
.+|+++ ||| ..+.+.|++++ .+.+|++++|++. +...++|
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 999987 998 67888888875 5899999999864 3444443
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.1e-13 Score=142.46 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=66.9
Q ss_pred ccccCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 144 WRGISGGEKKRL------SIALEILTR-PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 144 ~~~LSgGerqRv------sIa~aL~~~-P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
+..+|||||||+ ++|++++.+ |++|+|||||+|||+..+..+.+.|+++.+ +.+||++||++ ++...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCCE
Confidence 457999999988 567888999 999999999999999999999999999753 56899999996 36789999
Q ss_pred EEEEe
Q 045930 217 LFLLS 221 (661)
Q Consensus 217 v~lL~ 221 (661)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-14 Score=156.75 Aligned_cols=169 Identities=16% Similarity=0.106 Sum_probs=100.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAY 103 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 103 (661)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.......++++.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccceecceeeEEEecCc--ceEEEEecccc
Confidence 379999999999999999999999999999999742 1222222111233555555430 01111111100
Q ss_pred H--HhcCCCCCCCHHHHH--HHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 045930 104 S--AHLRLPSNMNNEEIT--DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDS 179 (661)
Q Consensus 104 ~--~~l~~~~~~~~~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~ 179 (661)
. +.. .........+ ++++.++..++++ +.. ...+|+|++||+.+|++|+.+|.++++ +++|.
T Consensus 216 i~~a~~--~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 216 IEGASE--GKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCGGG--SCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccchhh--hhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 0 000 0011111111 1122233333443 222 346999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeEE
Q 045930 180 AAAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 180 ~~~~~i~~~L~~la-~~g~tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
..+ ..++.+++.. +.|.+++.+|..-...+.++++.+.
T Consensus 282 ~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 282 LEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp SCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 877 4555555544 4576766555443456777776654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-14 Score=137.49 Aligned_cols=78 Identities=21% Similarity=0.165 Sum_probs=64.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
+.+++++|+++++|++++|+||||||||||+++|+|.+ + .+|+|.++|.+....+....+++|+..++ .+||.|+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~---~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G---HQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T---CCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C---CCCeEEECCEeeeeeccCCCcceeccccc-cCCcHHH
Confidence 56899999999999999999999999999999999998 6 38999999876421111012799998888 8999999
Q ss_pred HHH
Q 045930 101 IAY 103 (661)
Q Consensus 101 l~~ 103 (661)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 965
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-13 Score=127.72 Aligned_cols=99 Identities=19% Similarity=0.337 Sum_probs=73.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g-------------~~~~~~~~~~~~~~-------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE----AG-------------KNAAYIDAASMPLT-------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT----TT-------------CCEEEEETTTSCCC--------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh----cC-------------CcEEEEcHHHhhHH--------
Confidence 456676 8999999999999999999999997653 23 11344443321100
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHhcCCE-EEEEecCCchH
Q 045930 182 AFFVVKILKNIAHDGRT-IISSIHQPSSE 209 (661)
Q Consensus 182 ~~~i~~~L~~la~~g~t-vi~s~Hq~~~~ 209 (661)
+..+.+.+.++.++|++ +|+++|.+..+
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQQ 128 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHHH
Confidence 88899999999888888 89999975443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-13 Score=130.79 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=43.4
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 045930 161 ILTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE 209 (661)
Q Consensus 161 L~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~ 209 (661)
.+.+|++|+||||++ ++|+..+..+.+.+.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 345999999999985 9999999999999999888899999999998654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-14 Score=158.03 Aligned_cols=152 Identities=15% Similarity=0.191 Sum_probs=103.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-cc----------ccCeEEEEecCCCCC
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RL----------DYGGVAYVTQENIML 92 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~----------~~~~i~yv~Q~~~l~ 92 (661)
-+++|+++++|++++|+|+||||||||+++|+|++++. .|+|.++|.+. +. .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998753 79999976542 11 134689999998888
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh-hCC-CEEEE
Q 045930 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL-TRP-QLLFL 170 (661)
Q Consensus 93 ~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~-~~P-~lllL 170 (661)
+.+||++++.++..-. .. .+ +++..|+.+.... +-..-+|++.+++++. ..| .+||.
T Consensus 360 p~~tV~e~l~~a~~~~----~D------vV--LIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARN----ID------VL--IADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTT----CS------EE--EECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcC----CC------EE--EEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 8899999998874311 10 00 1222233221111 1122357888888664 457 45666
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecC
Q 045930 171 DEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQ 205 (661)
Q Consensus 171 DEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq 205 (661)
.++|+|.|.. +.++.+.+ -|.|.++.||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 6688886544 33455554 38899999994
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-15 Score=143.78 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=88.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-cc-------cc-CeEE----EEecCCCCCCCCCHHHHH
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-RL-------DY-GGVA----YVTQENIMLGTLTVRETI 101 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-~~-------~~-~~i~----yv~Q~~~l~~~lTV~E~l 101 (661)
++++|+|+||||||||++.|+|.+++.....|.|.++|.+. .. .+ +.++ +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 58999999999999999999999865322379999998762 11 11 2455 888876654 110
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITE-MGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLL-------FLDEP 173 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ll-------lLDEP 173 (661)
..++....++++++. +. -.|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 ------------~~~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 ------------VSEEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------------CCHHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------------CChhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 001111135556655 43 36888875 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhcC
Q 045930 174 TSG---LDSAAAFFVVKILKNIAHDG 196 (661)
Q Consensus 174 tsG---LD~~~~~~i~~~L~~la~~g 196 (661)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34455667777776666654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-13 Score=146.40 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=98.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----------ccCeEEEEecCCCCCCCCCHHHH
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----------DYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----------~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
++|++++|+||||||||||++.|+|.+++. .|+|.++|.+... .+..+.+++|+..+.|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998763 7999999876421 12346799999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~ 180 (661)
+.++..... . . .+++..|+.+..+..+ ++|| .+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d--------~--vliDtaG~~~~~~~l~-----~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--D--------V--VLIDTAGRSETNRNLM-----DEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--S--------E--EEEEECCSCCTTTCHH-----HHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--h--------h--hHHhhccchhHHHHHH-----HHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 987642110 0 0 0122233333222222 2243 38888888888888885553
Q ss_pred HHHHHHHHHHHHHh-cCCEEEEEecCC
Q 045930 181 AAFFVVKILKNIAH-DGRTIISSIHQP 206 (661)
Q Consensus 181 ~~~~i~~~L~~la~-~g~tvi~s~Hq~ 206 (661)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 456666777765 489999999963
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-15 Score=157.23 Aligned_cols=160 Identities=23% Similarity=0.224 Sum_probs=106.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------cccCeEEEEecCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------LDYGGVAYVTQENIM 91 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~~~~~i~yv~Q~~~l 91 (661)
+.+|+++|+++++|++++|+||||||||||+|+|+|.+.+. .|+|.+.|.+.. ..+++++|++|++.+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 46899999999999999999999999999999999988653 789988886542 123568999999877
Q ss_pred CCCC------------CHHHHHHHH-----------------------------HhcCCCCCCCHHHHH---HHHHHHHH
Q 045930 92 LGTL------------TVRETIAYS-----------------------------AHLRLPSNMNNEEIT---DVIEEAIT 127 (661)
Q Consensus 92 ~~~l------------TV~E~l~~~-----------------------------~~l~~~~~~~~~~~~---~~v~~~l~ 127 (661)
+... +++|.+... ..+.-+. ..++.+ +.+.+..+
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhcccc
Confidence 6532 233332110 0000000 001100 01111111
Q ss_pred HcCCCccccccccCccccccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 045930 128 EMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILT------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194 (661)
Q Consensus 128 ~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~ 194 (661)
.+.+ +..|.. ..+.+|+|++|++..+++++. +|++++ ||++|......+.+.|.++..
T Consensus 197 ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1222 122211 113579999999999999987 688887 999999999999999988754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.4e-14 Score=145.20 Aligned_cols=128 Identities=15% Similarity=0.189 Sum_probs=87.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHh----c
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAH----L 107 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~----l 107 (661)
+++.+++|.||||||||||.+.|++.+.+ .| . ..+.+.+|+||+.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C----CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 57899999999999999999999998754 22 0 12346667999988865 88899887521 1
Q ss_pred C---CCCCCCHHHHHHHHHHHHHHcCCC--cc--ccccccCccccccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCC
Q 045930 108 R---LPSNMNNEEITDVIEEAITEMGLE--DC--ADRLIGNWHWRGISGGEKKRLSIA--LEILTRPQLLFLDEPTSGLD 178 (661)
Q Consensus 108 ~---~~~~~~~~~~~~~v~~~l~~lgL~--~~--~d~~vg~~~~~~LSgGerqRvsIa--~aL~~~P~lllLDEPtsGLD 178 (661)
. .|.... .+...+.++.+.-. .. ....+. .....+||||+||+.+| +++ +|+|+|+|||++++|
T Consensus 94 ~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 94 QGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp SSSCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 1 122222 23455566665332 10 111111 12257999999999987 555 999999999999999
Q ss_pred HHH
Q 045930 179 SAA 181 (661)
Q Consensus 179 ~~~ 181 (661)
+..
T Consensus 167 ~~~ 169 (290)
T 1odf_A 167 PIL 169 (290)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.4e-12 Score=140.18 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=68.8
Q ss_pred cccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 145 RGISGGEKKRLSIALEIL----TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL~----~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876688999999994 567889999999
Q ss_pred e
Q 045930 221 S 221 (661)
Q Consensus 221 ~ 221 (661)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-13 Score=143.97 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=82.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE---CCeeccc-----ccCeEEEEecCCCCC-----CCCCH
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL---NGKKRRL-----DYGGVAYVTQENIML-----GTLTV 97 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~---~g~~~~~-----~~~~i~yv~Q~~~l~-----~~lTV 97 (661)
+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|+.... ..+.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 8776 3899998 8865321 113589999998553 78999
Q ss_pred HHHH--HHH----HhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHHHHHHHHHH
Q 045930 98 RETI--AYS----AHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALE 160 (661)
Q Consensus 98 ~E~l--~~~----~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGerqRvsIa~a 160 (661)
|++ .|. ..++........+...+++++++.++|.+ ..+++++ .|||.++|++.||++
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----IIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----HTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhcc
Confidence 887 443 11111111122233457899999999986 6777664 599988999999874
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-12 Score=133.14 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=82.2
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCceeeEEEECCeecc---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC
Q 045930 37 LAVMGPSGSGKSTLLDALAG-RLSGNVVMTGNVLLNGKKRR---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG-~~~~~~~~~G~i~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
+.|.||||+|||||+++|++ +..+. .|++.++|.+.. .....+++++|.+.+.-..+ + .. .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---N 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---C
Confidence 89999999999999999999 55553 688888876532 12356788888764321100 0 00 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~l 192 (661)
......++.++++.+..++.+.. .+|| +..+|+++++|||++ ||..++..+.+.|++.
T Consensus 104 ~~~~~~~~~i~~~~~~~~~~~~~----------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRIVIQELLKEVAQMEQVDFQD----------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHHHHHHHHHHHTTTTC---------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHhccccccc----------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 11112222333332222222111 2566 788999999999999 9999999999999886
Q ss_pred HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 193 AHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 193 a~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
. .+.++|+++|++......+.+|+ ..+.+.+++
T Consensus 162 ~-~~~~~Il~t~~~~~l~~~l~sR~------~~~~~~~~~ 194 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSPIIAPIKSQC------LLIRCPAPS 194 (354)
T ss_dssp T-TTEEEEEEESCSCSSCHHHHTTS------EEEECCCCC
T ss_pred c-CCCEEEEEeCCHHHHHHHHHhhc------eEEecCCcC
Confidence 4 36899999999854333333333 445555543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-14 Score=159.97 Aligned_cols=175 Identities=17% Similarity=0.174 Sum_probs=106.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee-ccc-ccCeEEEEecCCCCCCCCCHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK-RRL-DYGGVAYVTQENIMLGTLTVR 98 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~-~~~-~~~~i~yv~Q~~~l~~~lTV~ 98 (661)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|+++|.. ... ....++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45788999999999999999999999999999999999874 7999998864 221 234566666654322223444
Q ss_pred HHHHHHHhcCCC-----CCCCHHHHHH------------------HHHHHHHHcC-----CCc----cccccccCccccc
Q 045930 99 ETIAYSAHLRLP-----SNMNNEEITD------------------VIEEAITEMG-----LED----CADRLIGNWHWRG 146 (661)
Q Consensus 99 E~l~~~~~l~~~-----~~~~~~~~~~------------------~v~~~l~~lg-----L~~----~~d~~vg~~~~~~ 146 (661)
+.+..+.+.+ | ......+... .+.++++.+. +.. ..+..+ .....
T Consensus 324 ~~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMW 400 (511)
T ss_dssp HHHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEE
T ss_pred HHHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEE
Confidence 4443322211 1 0111111111 1222333322 211 111110 01235
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE--EecCCchHHHhhc
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIIS--SIHQPSSEVFALF 214 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~--s~Hq~~~~i~~~~ 214 (661)
+|||||||+.++. + | |+|||+.....+++.|.++.++|+|+++ ++|+. .++...+
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 7999999877652 2 7 9999998777666777666666788875 78884 4555544
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.1e-11 Score=128.79 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=51.5
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhc-CCEEEEEecCCc----------
Q 045930 153 KRLSIALEIL--TRPQLLFLDEPTSGLDSAAA------------FFVVKILKNIAHD-GRTIISSIHQPS---------- 207 (661)
Q Consensus 153 qRvsIa~aL~--~~P~lllLDEPtsGLD~~~~------------~~i~~~L~~la~~-g~tvi~s~Hq~~---------- 207 (661)
+.+.-+.+++ .+|+++++||||+.+|+... .++++.|++++++ |.|||+++|...
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g 339 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNP 339 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccC
Confidence 3444444443 46999999999999997533 6688889999876 999999999821
Q ss_pred --------hHHHhhcCeEEEEeCCe
Q 045930 208 --------SEVFALFDDLFLLSGGE 224 (661)
Q Consensus 208 --------~~i~~~~D~v~lL~~G~ 224 (661)
..+...+|.++.|.+++
T Consensus 340 ~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 340 DPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --------CHHHHHCSEEEEEEECS
T ss_pred CCccCCchhHHHHhcceEEEEEecC
Confidence 23467789999998664
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-14 Score=154.43 Aligned_cols=133 Identities=23% Similarity=0.271 Sum_probs=90.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc---------cCeEEEEe------
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD---------YGGVAYVT------ 86 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~---------~~~i~yv~------ 86 (661)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.+.+.... .+.+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 366666 4 3799999999999999999999999998763 79999887664311 12345544
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 87 ---QENIM--LGT----LTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 87 ---Q~~~l--~~~----lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
|++.. ++. .|+.+++.++..-++. .........+.++ .|..+|+.+.. .. ..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~--~~-----~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL--IS-----SSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH--HH-----HHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH--HH-----HHHHHHHHHH--
Confidence 88754 344 6899998876421100 0000111122233 46778887643 22 3699999999
Q ss_pred HHHHHhhCCCEEE
Q 045930 157 IALEILTRPQLLF 169 (661)
Q Consensus 157 Ia~aL~~~P~lll 169 (661)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-13 Score=135.97 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=83.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLP 110 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~ 110 (661)
.++|++++|+||||||||||+++|+|.+++. | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 5799999999999999999999999987641 2 135677776654432 222221100000111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 045930 111 SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA-LEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189 (661)
Q Consensus 111 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa-~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L 189 (661)
....... ..+.+..+...+..+....+ +..+.|+||+||++++ ++++.++.++++|||.-
T Consensus 81 ~~~~~~~----~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDFEG----FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCHHH----HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhHHH----HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 1112222 22333332111112222222 1235799999999988 77788888888888741
Q ss_pred HHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 190 KNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 190 ~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.++.+.--.++++.++....+..+..|
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 111222235666766643335556666
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-14 Score=153.94 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=119.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC------C--C-CceeeEEEECCeecc------cccCe---EEEEecCCCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLS------G--N-VVMTGNVLLNGKKRR------LDYGG---VAYVTQENIM 91 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~------~--~-~~~~G~i~~~g~~~~------~~~~~---i~yv~Q~~~l 91 (661)
.+++|+.++|+|+||||||||+|+|+|... | . ....|.+.++|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567999999999999999999999999321 0 0 124799999884321 11122 3477888888
Q ss_pred CCCCCHHHHH--HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCC--CE
Q 045930 92 LGTLTVRETI--AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRP--QL 167 (661)
Q Consensus 92 ~~~lTV~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P--~l 167 (661)
.+..+..|++ .|...++. ++.++..+...+ |.. +..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 8887776655 44433321 111111122211 121 12356553 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCCchHHHhhcCeEE-EEeCC-eEEEecCCCC
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNI-AHDGRTIISSIHQPSSEVFALFDDLF-LLSGG-ETVYFGEAKS 233 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~l-a~~g~tvi~s~Hq~~~~i~~~~D~v~-lL~~G-~~v~~G~~~~ 233 (661)
+++|||+.++|+.......+.++.+ ++.|.||+ +|+. .++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 77787864 8984 68899999999 99999 9988887654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.6e-13 Score=141.64 Aligned_cols=166 Identities=21% Similarity=0.204 Sum_probs=106.5
Q ss_pred cceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCCC-ceeeEEEECCeecc-----cccCeEEEEec
Q 045930 21 RRLLNGLTGYAEPA-------RILAVMGPSGSGKSTLLDALAGRLSGNV-VMTGNVLLNGKKRR-----LDYGGVAYVTQ 87 (661)
Q Consensus 21 ~~iL~~vs~~i~~G-------e~~aI~GpsGsGKSTLL~~LaG~~~~~~-~~~G~i~~~g~~~~-----~~~~~i~yv~Q 87 (661)
+.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.+.. .....+.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 46889999999887 8999999999999999999999863221 24566555544321 12457999999
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCC
Q 045930 88 ENIMLGTLTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQ 166 (661)
Q Consensus 88 ~~~l~~~lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~ 166 (661)
.+.+.+ ++.|++.......... -.......+.++..+..++|.. +++.++ .||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~-----~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSG-----LLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGG-----GSCHHHHTTCSEE--------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcc-----cCCHHHHHhcCce--------
Confidence 887765 7888885543321100 0011222344555666667655 555554 5999999998655
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCe
Q 045930 167 LLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 167 lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.+||+.+..++.++|++.++. | +.|++ +.+..++++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred --------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 788888999999999998764 4 24663 344455543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.07 E-value=7.1e-12 Score=131.27 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=68.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE---CCeeccc-----ccCeEEEEecCCC-----------
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL---NGKKRRL-----DYGGVAYVTQENI----------- 90 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~---~g~~~~~-----~~~~i~yv~Q~~~----------- 90 (661)
.+.+|++++|+||||||||||||+|+|+.++. +|+|.+ +|+.... ..+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999998874 899999 7865421 1235899999874
Q ss_pred -----CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 045930 91 -----MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-DCADRLIG 140 (661)
Q Consensus 91 -----l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg 140 (661)
++|.+|| ||+.|.. +. ...+...+++++++.+||. +..++++.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 5889999 9888752 21 1123345789999999995 66777653
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-11 Score=128.03 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=68.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE---CCeecccc---cC-eEEEEecCCCCCC----CCCH
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL---NGKKRRLD---YG-GVAYVTQENIMLG----TLTV 97 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~---~g~~~~~~---~~-~i~yv~Q~~~l~~----~lTV 97 (661)
+++.+|++++|+||||||||||+|+|+|...+ .+|+|.+ +|+..... .+ .++|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 45678999999999999999999999999876 4899988 67643211 11 1799999987655 6899
Q ss_pred HHHHH--HH------HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 98 RETIA--YS------AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 98 ~E~l~--~~------~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
|++. |. ..|+........+....++++++.++|.+.+.... ..++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 32 11232211122233456899999999987443332 2477777763
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.5e-14 Score=138.89 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 157 IAL-EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 157 Ia~-aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
.++ +++.+|++++|||+|+++|..+...+.+.|.+..++ +...|.+ ..+|.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 445 677788888889999999999999999998887654 2234521 56899887653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=107.90 Aligned_cols=60 Identities=22% Similarity=0.130 Sum_probs=45.6
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHh-cCCEEEEEecCCchH-------HHhhcCeEEEEeC
Q 045930 163 TRPQLLFLDEPTSGL--DSAAAFFVVKILKNIAH-DGRTIISSIHQPSSE-------VFALFDDLFLLSG 222 (661)
Q Consensus 163 ~~P~lllLDEPtsGL--D~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~-------i~~~~D~v~lL~~ 222 (661)
.+|+++++|||++.+ |.....+.+..|.++++ .|.|||+++|..... +.+.+|.++.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 65555666666776654 589999999986431 4678899999964
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-13 Score=141.24 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=86.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCC-CCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQEN-IMLGT 94 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~-~l~~~ 94 (661)
..+++++++.+++| ++|.||||||||||+++|+|...+ |.+.++|.+... ..+.+++++|+. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45889999999999 999999999999999999998653 688888865321 123466777764 44555
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 045930 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPt 174 (661)
+++.|++...+..+ .. ...+ .+.+..++.+ ..|||||+||+.|++++..+|++| ||++
T Consensus 106 i~~~Deid~~~~~r-------~~--~~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SD--RETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CC--Ccch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 66666665322111 00 0000 1223344444 469999999999999999999986 8886
Q ss_pred C
Q 045930 175 S 175 (661)
Q Consensus 175 s 175 (661)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=119.94 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=112.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
..|+++.+-+++|+++.|.|+||+|||||+..+++..... .| ..+.|+.-+ ++..+..
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g-------------~~Vl~~s~E------~s~~~l~ 248 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN-------------ENVAIFSLE------MSAQQLV 248 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS-------------CCEEEEESS------SCHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC-------------CcEEEEECC------CCHHHHH
Confidence 5688888889999999999999999999999999864320 12 123444332 2222221
Q ss_pred HH--HHh-------cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEE
Q 045930 102 AY--SAH-------LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFL 170 (661)
Q Consensus 102 ~~--~~~-------l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllL 170 (661)
.- +.. ++. ...+.++ .+++.+.++.++..+..-... .++|.+|.+ +.++.++ .+|+++++
T Consensus 249 ~r~~~~~~~~~~~~l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d~-----~~~s~~~i~--~~~~~l~~~~~~~livI 319 (454)
T 2r6a_A 249 MRMLCAEGNINAQNLRT-GKLTPED-WGKLTMAMGSLSNAGIYIDDT-----PSIRVSDIR--AKCRRLKQESGLGMIVI 319 (454)
T ss_dssp HHHHHHHHTCCHHHHHT-SCCCHHH-HHHHHHHHHHHHSSCEEEECC-----TTCCHHHHH--HHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHcCCCHHHHhc-CCCCHHH-HHHHHHHHHHHhcCCEEEECC-----CCCCHHHHH--HHHHHHHHHcCCCEEEE
Confidence 11 000 111 1233333 335556666654433221111 258999987 5667776 68999999
Q ss_pred eCCCCCCCH--------HHHHHHHHHHHHHHhc-CCEEEEEec---------C--Cc-------hHHHhhcCeEEEEeCC
Q 045930 171 DEPTSGLDS--------AAAFFVVKILKNIAHD-GRTIISSIH---------Q--PS-------SEVFALFDDLFLLSGG 223 (661)
Q Consensus 171 DEPtsGLD~--------~~~~~i~~~L~~la~~-g~tvi~s~H---------q--~~-------~~i~~~~D~v~lL~~G 223 (661)
|+++...+. .....+.+.|+.+|++ |.+||+++| + |. ..+...+|.|++|..+
T Consensus 320 D~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 320 DYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp ECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 999987742 3446788889999876 999999999 2 42 1477889999999877
Q ss_pred eE
Q 045930 224 ET 225 (661)
Q Consensus 224 ~~ 225 (661)
+.
T Consensus 400 ~~ 401 (454)
T 2r6a_A 400 DY 401 (454)
T ss_dssp TC
T ss_pred cc
Confidence 64
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.4e-12 Score=131.57 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=67.1
Q ss_pred ceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCCceeeEEEE---CCeeccc
Q 045930 22 RLLNGLTGYA-------------------EPARILAVMGPSGSGKSTLLDALAGRLS--GNVVMTGNVLL---NGKKRRL 77 (661)
Q Consensus 22 ~iL~~vs~~i-------------------~~Ge~~aI~GpsGsGKSTLL~~LaG~~~--~~~~~~G~i~~---~g~~~~~ 77 (661)
++++++|+.+ ++|+++||+||||||||||+++|+|++. + .+|+|.+ +|.....
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~---~~G~i~vi~~d~~~~~~ 125 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP---EHRRVELITTDGFLHPN 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST---TCCCEEEEEGGGGBCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEecCCccCcH
Confidence 5788899887 8999999999999999999999999876 5 3799998 8765321
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
.++.++++ |+..+++.+|+.+++.+...++
T Consensus 126 ~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 126 QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 12346788 8777788899999998876654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.86 E-value=8.5e-10 Score=115.68 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=78.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHh
Q 045930 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAH 106 (661)
Q Consensus 27 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 106 (661)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+... . ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r----~-------------~a~-------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR----A-------------AAI-------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC----H-------------HHH--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccccc----H-------------HHH--------
Confidence 45567899999999999999999999999987642 4566654432110 0 001
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 045930 107 LRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL---SIALEILTRPQLLFLDEPTSGLDSAAAF 183 (661)
Q Consensus 107 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRv---sIa~aL~~~P~lllLDEPtsGLD~~~~~ 183 (661)
+.+..+.+.+|+... ...|||+.+++ ++++++..+|+++|+|||.. .....
T Consensus 149 -------------eqL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 149 -------------EQLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp -------------HHHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred -------------HHHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 112334455565421 23689999999 89999999999999999974 34455
Q ss_pred HHHHHHHHHHh
Q 045930 184 FVVKILKNIAH 194 (661)
Q Consensus 184 ~i~~~L~~la~ 194 (661)
.+++.|+++.+
T Consensus 203 ~l~~eL~~l~~ 213 (306)
T 1vma_A 203 NLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.4e-11 Score=116.24 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=45.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec-----ccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR-----RLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~-----~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
|+++++|++++|+||||||||||+++|+|+.+ . +.+++... ......++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-E------IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-S------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-C------eEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999864 2 33333321 11234688999987666555554443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.1e-09 Score=109.24 Aligned_cols=118 Identities=17% Similarity=0.098 Sum_probs=81.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHH
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYS 104 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 104 (661)
+++++. +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH----------------hHH-HHH---
Confidence 678888 99999999999999999999999987542 56676655432100 000 000
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 045930 105 AHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP-TSGLDSAAAF 183 (661)
Q Consensus 105 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEP-tsGLD~~~~~ 183 (661)
..+.+..|+.-..... +-.-.+.+|..|+.+...+++++|+||| +.|+|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~~~-------~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVMD-------GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEECCT-------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEcCC-------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 1122344554321110 1234456788999988899999999999 9999988888
Q ss_pred HHHHHHHHH
Q 045930 184 FVVKILKNI 192 (661)
Q Consensus 184 ~i~~~L~~l 192 (661)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 877776665
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-10 Score=129.70 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=102.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCC--CHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL--TVRETI 101 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG--~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~l--TV~E~l 101 (661)
.+++.+.++..++|.|++||||||+|++|.. +... ..|++.+.+.+.+.. . .+....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~----e--l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKML----E--LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSS----G--GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchh----h--hhhhccCCcccceeecCH
Confidence 4778888999999999999999999999875 2222 134444433322110 0 0000011111 121222
Q ss_pred HHHHh-cCCCCCCCHHHHHHHHHHHHHHcCCCccccc--cccCccccccCHHHHHHH----------HHHHHHhhCCC-E
Q 045930 102 AYSAH-LRLPSNMNNEEITDVIEEAITEMGLEDCADR--LIGNWHWRGISGGEKKRL----------SIALEILTRPQ-L 167 (661)
Q Consensus 102 ~~~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~--~vg~~~~~~LSgGerqRv----------sIa~aL~~~P~-l 167 (661)
..+.. ++ ...++.++|. ++++..|+.+..+. ++. ..+|+||+||. .+++++...|. +
T Consensus 230 ~~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 230 KDAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 21111 11 1134555554 77888998775443 121 24788887752 34556677898 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhc----CCEEEEEecCCchH-----HH-hhcCeEEE
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAHD----GRTIISSIHQPSSE-----VF-ALFDDLFL 219 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~~----g~tvi~s~Hq~~~~-----i~-~~~D~v~l 219 (661)
+++||++.-+|.. ...+.+.|.++++. |.++|+++|.|+.+ +. ++.+||.+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 8999999988843 34566666666543 67999999999732 33 44455554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-09 Score=109.42 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=88.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPS 111 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~ 111 (661)
++|++++++|||||||||+++.|++.+.+. +| +.+.++.+|.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 579999999999999999999999987531 34 24677777652 3355665554321
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 045930 112 NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191 (661)
Q Consensus 112 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~ 191 (661)
..|+.... ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 0122 22344444 45999999999 999998766544443333
Q ss_pred HH---hcCCEEEE-EecCCchHHHhhcCeEEEEeCCeEEEe
Q 045930 192 IA---HDGRTIIS-SIHQPSSEVFALFDDLFLLSGGETVYF 228 (661)
Q Consensus 192 la---~~g~tvi~-s~Hq~~~~i~~~~D~v~lL~~G~~v~~ 228 (661)
+. .++.++++ ++|+. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 22334555 47874 567788887766666777654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=4.9e-09 Score=111.92 Aligned_cols=148 Identities=20% Similarity=0.287 Sum_probs=89.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
+-+++|+++.|.||||||||||+..++..... .| ..+.|+.-+...-+ . .+.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~----~g-------------~~vlyi~~E~~~~~------~--~a~--- 107 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQA----AG-------------GIAAFIDAEHALDP------E--YAK--- 107 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----TT-------------CCEEEEESSCCCCH------H--HHH---
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHh----CC-------------CeEEEEECCCCcCH------H--HHH---
Confidence 36899999999999999999998888754321 11 23556655432111 0 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC---------
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTR--PQLLFLDEPTSGL--------- 177 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~--P~lllLDEPtsGL--------- 177 (661)
.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 108 -------------------~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 108 -------------------KLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp -------------------HTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred -------------------HcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 122210 000111 11233 2345678888765 9999999999998
Q ss_pred -CH---HHHHHHHHHHHHH---Hh-cCCEEEEEecCCch---------------HHHhhcCeEEEEeCCeEEEecC
Q 045930 178 -DS---AAAFFVVKILKNI---AH-DGRTIISSIHQPSS---------------EVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 178 -D~---~~~~~i~~~L~~l---a~-~g~tvi~s~Hq~~~---------------~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
|+ ..+..+.+.+++| ++ .|.|||++.|.... .+..++|.++.+..++++..|+
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2233445555555 33 59999999996421 2567899999998887665554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-10 Score=133.82 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=99.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCC----------
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI---------- 90 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~---------- 90 (661)
..+++++++.+++|+.++|+||||+|||||+++|++..++. ..|.+.+++.+.......++++++...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~ 124 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREK 124 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHh
Confidence 46889999999999999999999999999999999998763 248888888765544566889887531
Q ss_pred ------------CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 91 ------------MLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 91 ------------l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
.+..+++.+|+.....-..+...- .+...... +.+|.-+...... .++|+|++|++..+
T Consensus 125 ~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v-~~~~~~~~---~L~G~~~~~~~~~-----g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 125 AKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI-DATGAHAG---ALLGDVRHDPFQS-----GGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHTCC-----------CCCEEEECCTTCSSCCEE-ECTTCCHH---HHHCEECCCCC---------CCCCGGGGEECC
T ss_pred hccchhhhhhcccccccccccceeeccccCCCCCEE-EcCCCCHH---hcCceEEechhhc-----CCccccccccccCc
Confidence 111111111111000000000000 00000011 1112111111111 36999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKN 191 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~ 191 (661)
.....++.+||+||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 898888877777764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-09 Score=117.22 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=46.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR 75 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~ 75 (661)
..+|+|+|+++++ |+++|+|||||||||||++|+|++++. +|+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 4589999999999 999999999999999999999998874 89999999754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.71 E-value=7.4e-12 Score=129.19 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=81.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----cccCeEEEEecCCC-CCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQENI-MLGT 94 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~~-l~~~ 94 (661)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+.. ...+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35788999999999 89999999999999999999764 578888875421 11234566777643 4566
Q ss_pred CCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 95 LTVRETIAYSAHLRLPS-NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
+++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 77777775433211000 001122233333332 24899999999999999999876
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-11 Score=125.91 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=79.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----cccCeEEEEecCC-CCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----LDYGGVAYVTQEN-IMLGT 94 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~~~~~i~yv~Q~~-~l~~~ 94 (661)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.. ...+.+++++|+. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 35788999999999 89999999999999999999764 577888775421 1123355667753 24566
Q ss_pred CCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCE
Q 045930 95 LTVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQL 167 (661)
Q Consensus 95 lTV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~l 167 (661)
+++.|++......+.. .....++..+.+++++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 6777777433221110 0011122233333332 24889999999999999999976
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-08 Score=96.46 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~l 192 (661)
.+.+.+|++++.+|+++++| ||++|..+..++++.|.+.
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999 9999999999999888653
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-08 Score=97.85 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=23.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA-GRLSG 60 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La-G~~~~ 60 (661)
.+..+++|+++++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45788999999999999999999999999999999 98753
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-10 Score=122.61 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=81.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCC-CCCCCCHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENI-MLGTLTVRE 99 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~-l~~~lTV~E 99 (661)
..+|+++|+.+++|++++|.||||||||||+++|+|.. .|++..-..+.......+++++|... ++..++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHH
Confidence 46899999999999999999999999999999999863 46655411111110113556666653 233333221
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc--cc--CccccccCHHHHHHHHHHHHHhhCCCEE
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEEAITE---MGLED-CA---DRL--IG--NWHWRGISGGEKKRLSIALEILTRPQLL 168 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---d~~--vg--~~~~~~LSgGerqRvsIa~aL~~~P~ll 168 (661)
.+ .-++... ........+.+.++. +.+.. .. +.+ .| +.....+++|+++|+..+++++.+|+++
T Consensus 230 ~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 11 0000000 010011223333331 11110 00 100 01 1122458999999999888888999998
Q ss_pred E-EeCCCC
Q 045930 169 F-LDEPTS 175 (661)
Q Consensus 169 l-LDEPts 175 (661)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999997
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-07 Score=103.45 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCCc
Q 045930 149 GGEKKRLSIALEILTRPQLLFLDEP----------TSGLDSAAAFFVVKILKNIA----HDGRTIISSIHQPS 207 (661)
Q Consensus 149 gGerqRvsIa~aL~~~P~lllLDEP----------tsGLD~~~~~~i~~~L~~la----~~g~tvi~s~Hq~~ 207 (661)
|++++|..++++....|.+||+||+ ++|.|......+.++|..+- +.+..||.++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677776666777777663 24678999999973
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-08 Score=106.97 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=87.9
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC--------CceeeEEEECCeecccccCeEEEEecCCCCCCCCCHH---HH
Q 045930 33 PARI-LAVMGPSGSGKSTLLDALAGRLSGN--------VVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVR---ET 100 (661)
Q Consensus 33 ~Ge~-~aI~GpsGsGKSTLL~~LaG~~~~~--------~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~---E~ 100 (661)
.|-. ++|+|++|||||||+|.|+|..... -...|.+.++|.+... ....|++.+.+. ..|. .+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHH
Confidence 3444 9999999999999999999975310 0246889998865321 122454444221 1121 12
Q ss_pred HHHHHh--c--CC-CCCCCH---HHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH----HHH-hhCCCE
Q 045930 101 IAYSAH--L--RL-PSNMNN---EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA----LEI-LTRPQL 167 (661)
Q Consensus 101 l~~~~~--l--~~-~~~~~~---~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa----~aL-~~~P~l 167 (661)
+..... + .. ...... .+..+.+.++++.+++.+..--.++| ....+|+|+++|+.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 211110 0 00 001111 22334467788888876544222232 2234788888988887 444 334444
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 045930 168 LFLDEPTSGLDSAAAFFVVKILKNIAH 194 (661)
Q Consensus 168 llLDEPtsGLD~~~~~~i~~~L~~la~ 194 (661)
+|+|++|......+.+.|.++..
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988754
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-07 Score=100.54 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=30.5
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 23 LLNGLT--GYAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 23 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-|+.+- +=+++|+++.|.||||||||||+..+++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344443 3699999999999999999999999998653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=92.34 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=31.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.-|+++.+-+++|+++.|.|++|+|||||+..++..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777777999999999999999999998888753
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-07 Score=106.84 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=59.7
Q ss_pred ccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEE-ecCCchHHHhhcCeEEEE
Q 045930 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISS-IHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s-~Hq~~~~i~~~~D~v~lL 220 (661)
+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|++| ||++ ..+.+++++.-++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~vi 265 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPLL 265 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCEE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCcc
Confidence 34589999999999999999999999999996 999887777776666554456778775 8875 5677788754333
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.9e-07 Score=96.61 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=87.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.=+ ++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g-------~~Vl~fSlE------ms----- 85 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD-------RGVAVFSLE------MS----- 85 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT-------CEEEEEESS------SC-----
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC-------CeEEEEeCC------CC-----
Confidence 457777777999999999999999999999888764321 11 224453322 23
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 045930 102 AYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAA 181 (661)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~ 181 (661)
.++...++......+.+.+..+ | .||.+|.+|+..|...+.++++++.|+|...
T Consensus 86 -------------~~ql~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s----- 139 (338)
T 4a1f_A 86 -------------AEQLALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR----- 139 (338)
T ss_dssp -------------HHHHHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----
T ss_pred -------------HHHHHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----
Confidence 3333333333333334433332 2 4999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHhc--CCEEEEEec
Q 045930 182 AFFVVKILKNIAHD--GRTIISSIH 204 (661)
Q Consensus 182 ~~~i~~~L~~la~~--g~tvi~s~H 204 (661)
..++...++++.++ |..+|++-|
T Consensus 140 i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33666777777654 567776643
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3e-07 Score=89.15 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA 193 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la 193 (661)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-08 Score=98.73 Aligned_cols=46 Identities=33% Similarity=0.382 Sum_probs=31.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeec
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR 75 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~ 75 (661)
+..+-....++|++++|+||||||||||+++|++.+ |.+.++|...
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 333344667899999999999999999999999864 6677777543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-08 Score=101.23 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=40.0
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-------------cccCeEEEEecC
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-------------LDYGGVAYVTQE 88 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-------------~~~~~i~yv~Q~ 88 (661)
++++.+ ++++|+|||||||||||++|+|.+.+. +|+|.++|.+.. ..+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999998874 788988886531 013568888884
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-06 Score=94.05 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=47.2
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe--cCC
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLD-EPTSGLDSAAAFFVVKILKNIAHDGRTIISSI--HQP 206 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLD-EPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~--Hq~ 206 (661)
.+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... +..+|++. ||.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 58999998876 55556778889999 99999999998888877776654 67777777 774
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-07 Score=96.07 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=36.1
Q ss_pred eEEEEEE-EEEeecCCcccccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 2 YLVWEEV-TVVVPNFGSGPTRRLLNGLTGYAEP---ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 2 ~l~~~~l-~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.|+++|+ ++.+. ..+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3678888 87662 135799999999999 9999999999999999999999865
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-06 Score=95.94 Aligned_cols=103 Identities=8% Similarity=0.153 Sum_probs=67.8
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE-EeCCeEEEecCCCC--hhH--
Q 045930 163 TRPQLLFLDEPTSGLDS-AAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL-LSGGETVYFGEAKS--APT-- 236 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~-~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l-L~~G~~v~~G~~~~--~~~-- 236 (661)
.+|++|++||+..-.+. .++..+...+..+.+.|+.||+++|.|..++..+.+++.- +..|.++..++++. ..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887664 6777888999988888999999999975544334444433 45688888787764 222
Q ss_pred --HHHhcCCCCCCCCCchhHHHHhhccCchhHH
Q 045930 237 --FFAEAGFPCPTRRNPSDHFLRCINSDFDVVT 267 (661)
Q Consensus 237 --~f~~~g~~~~~~~npad~~~~~~~~~~~~~~ 267 (661)
.....|...++ ...+++......+.+.+.
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhcCCCHHHHH
Confidence 23334555443 345666655555544433
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.07 E-value=9e-06 Score=86.56 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=35.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH---DGRTIISSIHQP 206 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~---~g~tvi~s~Hq~ 206 (661)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 577899999997
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-06 Score=84.09 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=24.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 19 PTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 19 ~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+...+++|||+++++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999999865
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-08 Score=112.11 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=79.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCC-CCCCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENI-MLGTL 95 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~-l~~~l 95 (661)
.+++++++.+++| ++|.||||+|||||+++|++... .+.+.++|.+... ..+.+..++|+.. ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 4678899999999 89999999999999999999764 4677787754311 0122444555432 33444
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 045930 96 TVRETIAYSAHLRLP-SNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT 174 (661)
Q Consensus 96 TV~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPt 174 (661)
.+.|++......+.. .....++..+.+++++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 444444322111100 00112333444444443 3778888888888888888887 78775
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-06 Score=82.10 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=32.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7899999999 9999999999999999999987654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.03 E-value=7.7e-07 Score=93.75 Aligned_cols=76 Identities=18% Similarity=0.107 Sum_probs=53.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---------cc-----cCeEEEE-ecC
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---------LD-----YGGVAYV-TQE 88 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---------~~-----~~~i~yv-~Q~ 88 (661)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+.. .. +..+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 46899999999999999999999999999999987642 577877654421 01 3457888 665
Q ss_pred CCCCCCCCHHHHHH
Q 045930 89 NIMLGTLTVRETIA 102 (661)
Q Consensus 89 ~~l~~~lTV~E~l~ 102 (661)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444334444443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.1e-06 Score=82.12 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=27.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
++++|++++|+||||||||||+++|++...+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998844
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.97 E-value=5.8e-05 Score=80.08 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=79.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHL 107 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l 107 (661)
+-+++|+++.|.||+|+|||||+..++... .+. ...| ....+.|+.-+..+ ...+-.....++
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~-~~gg-----------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPG-AGGY-----------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB-TTTB-----------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccc-ccCC-----------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 568999999999999999999999988742 110 0001 01346677665432 222222222222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCCCHH--
Q 045930 108 RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGE-KKRLSIALEIL----TRPQLLFLDEPTSGLDSA-- 180 (661)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGe-rqRvsIa~aL~----~~P~lllLDEPtsGLD~~-- 180 (661)
. ... +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 181 g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 181 N----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp T----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred C----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 1 111 1223322111 1123332 34555566666 569999999999865432
Q ss_pred ----------HHHHHHHHHHHHHhc-CCEEEEEecCC
Q 045930 181 ----------AAFFVVKILKNIAHD-GRTIISSIHQP 206 (661)
Q Consensus 181 ----------~~~~i~~~L~~la~~-g~tvi~s~Hq~ 206 (661)
...++++.|++++++ |.+||++.|-.
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 134566667777765 88988887753
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.2e-05 Score=83.77 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=39.6
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEec
Q 045930 147 ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG-RTIISSIH 204 (661)
Q Consensus 147 LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g-~tvi~s~H 204 (661)
-++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| ++|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999887774334445443 44566677776655 45555544
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.95 E-value=6.8e-06 Score=85.64 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=83.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNM 113 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~ 113 (661)
+..++|+|++|+|||||+|.|.|.... + ..+.+.....+..+++.+++..+ ++.| .| +.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~-------i-~s~~~~tTr~~~~gi~~~~~~~i---~~iD---------Tp-G~ 66 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS-------I-TSRKAQTTRHRIVGIHTEGAYQA---IYVD---------TP-GL 66 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE-------E-CCCCSSCCSSCEEEEEEETTEEE---EEES---------SS-SC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc-------c-cCCCCCcceeeEEEEEEECCeeE---EEEE---------Cc-CC
Confidence 348999999999999999999996311 0 11112111234467777654211 0000 11 11
Q ss_pred CHHHHHHHHHHHHHHc---CCCccccccc--cCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHH
Q 045930 114 NNEEITDVIEEAITEM---GLEDCADRLI--GNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEPTSGLDSAA-AFFV 185 (661)
Q Consensus 114 ~~~~~~~~v~~~l~~l---gL~~~~d~~v--g~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEPtsGLD~~~-~~~i 185 (661)
.. +......+.+... .+. ..|-.+ -+ . ..+|+|++ .+++.+. ..|.++++ +.+|... ...+
T Consensus 67 ~~-~~~~~l~~~~~~~~~~~l~-~~D~vl~Vvd-~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 67 HM-EEKRAINRLMNKAASSSIG-DVELVIFVVE-G-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp CH-HHHHHHHHHHTCCTTSCCC-CEEEEEEEEE-T-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred Cc-cchhhHHHHHHHHHHHHHh-cCCEEEEEEe-C-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 10 0011111111110 111 111111 01 1 12888886 4566666 67999999 7899876 6677
Q ss_pred HHHHHHHHhc-CC--EEEEEecCCchHHHhhcCeEE
Q 045930 186 VKILKNIAHD-GR--TIISSIHQPSSEVFALFDDLF 218 (661)
Q Consensus 186 ~~~L~~la~~-g~--tvi~s~Hq~~~~i~~~~D~v~ 218 (661)
.+.++++++. |. .+.++.|+- ..+..++|.+.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 8888888764 43 566777774 45777777654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4e-07 Score=88.80 Aligned_cols=50 Identities=32% Similarity=0.384 Sum_probs=40.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEE--EECCee
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNV--LLNGKK 74 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i--~~~g~~ 74 (661)
....+.++...++|++++|+||||||||||+++|++.+.. .|.+ .++|..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~ 63 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDN 63 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCch
Confidence 3456677777899999999999999999999999998742 4655 676654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.92 E-value=7.5e-07 Score=90.44 Aligned_cols=62 Identities=24% Similarity=0.157 Sum_probs=42.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCceeeEEE--------ECCeecc------cccCeEEE
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALA---GRLSGNVVMTGNVL--------LNGKKRR------LDYGGVAY 84 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La---G~~~~~~~~~G~i~--------~~g~~~~------~~~~~i~y 84 (661)
.++++.+ ++|++++|+|||||||||++++|+ |...+ .+|.+. .+|.+.. ...+.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3455544 789999999999999999999999 87654 478887 6776542 11345778
Q ss_pred EecCC
Q 045930 85 VTQEN 89 (661)
Q Consensus 85 v~Q~~ 89 (661)
++|++
T Consensus 92 ~~~~~ 96 (252)
T 4e22_A 92 RFVSQ 96 (252)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 87753
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.9e-05 Score=78.24 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----cCCEEEEEecCCc---hHH
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA----------AAFFVVKILKNIAH----DGRTIISSIHQPS---SEV 210 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~----------~~~~i~~~L~~la~----~g~tvi~s~Hq~~---~~i 210 (661)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998766532 22233444443321 2346778888753 233
Q ss_pred HhhcCeEE
Q 045930 211 FALFDDLF 218 (661)
Q Consensus 211 ~~~~D~v~ 218 (661)
..-||+.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 44455543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-07 Score=99.57 Aligned_cols=39 Identities=31% Similarity=0.261 Sum_probs=33.2
Q ss_pred cceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 21 RRLLNGLTGYAEPAR------ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge------~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+..|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456777777777766 999999999999999999999875
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-06 Score=85.49 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH-HHhhcCeEEEEe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSE-VFALFDDLFLLS 221 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~-i~~~~D~v~lL~ 221 (661)
+.|+.+|..++.....+|+.+.++ ++.+++.....+.+.++.. .+.+||+.+|...+. ....||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 578888888888888877654332 2344555444444433322 356888888875321 256788888775
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=4.3e-06 Score=80.15 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~ 70 (661)
.+|++++|+||||||||||++.|++..++. ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 379999999999999999999999987532 3455443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=9.5e-05 Score=77.70 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRL-SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHL 107 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~-~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l 107 (661)
+-+++|+++.|.||+|+|||||+..++... .+. ..| |. ...+.|+.-+..+ ...+-.....++
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~--~~g-----g~-----~~~vlyi~~e~~~----~~~~l~~~~~~~ 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP--EKG-----GL-----SGKAVYIDTEGTF----RWERIENMAKAL 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG--GGT-----CC-----SCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc--ccC-----CC-----CCeEEEEECCCCC----CHHHHHHHHHHh
Confidence 568999999999999999999999888643 210 011 10 1345676655432 122222222222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCCCH----
Q 045930 108 RLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG-EKKRLSIALEIL---TRPQLLFLDEPTSGLDS---- 179 (661)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgG-erqRvsIa~aL~---~~P~lllLDEPtsGLD~---- 179 (661)
. ...+ ++++.+- +. +..+.. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 166 g----~~~~-------~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 166 G----LDID-------NVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp T----CCHH-------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred C----CCHH-------HHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 1 1111 1222111 10 112333 235677778888 57999999999875432
Q ss_pred ----HH----HHHHHHHHHHHHhc-CCEEEEEecC
Q 045930 180 ----AA----AFFVVKILKNIAHD-GRTIISSIHQ 205 (661)
Q Consensus 180 ----~~----~~~i~~~L~~la~~-g~tvi~s~Hq 205 (661)
.. ..++++.|++++++ |.+||++.|-
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 24556667777665 8899988774
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.5e-06 Score=83.33 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=33.9
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee
Q 045930 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74 (661)
Q Consensus 27 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~ 74 (661)
-++..++|++++|.|+||||||||+++|+|. .|+|.+.+.+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 3445579999999999999999999999997 3667777665
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.80 E-value=7e-05 Score=82.25 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=97.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHH
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETI 101 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 101 (661)
.-|+.+.+-+++|+++.|.|++|+|||||...++...... .| ..+.|+.=+ ++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g-------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG-------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC-------------CCEEEEESS------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC-------------CeEEEEECC------CCHHHHH
Confidence 3567777779999999999999999999998887643210 11 124444332 2333222
Q ss_pred HH--HHhcCCCC------CCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEe
Q 045930 102 AY--SAHLRLPS------NMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLD 171 (661)
Q Consensus 102 ~~--~~~l~~~~------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLD 171 (661)
.- +.....+. ..+.++. +++.+.++.+.-.+. .+-+ ..++|..|- .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~-~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDF-SRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHH-HHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHH-HHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 11 11111110 1233332 334444444321111 1110 124676665 34455555 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHhc-CCEEEEEecCCc------------------hHHHhhcCeEEEEeC
Q 045930 172 EPTSGLDS----------AAAFFVVKILKNIAHD-GRTIISSIHQPS------------------SEVFALFDDLFLLSG 222 (661)
Q Consensus 172 EPtsGLD~----------~~~~~i~~~L~~la~~-g~tvi~s~Hq~~------------------~~i~~~~D~v~lL~~ 222 (661)
..+.-.+. .....+.+.|+.++++ |.+||+++|-.. ..+.+.+|.|+.|..
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98754322 1234677888888876 899999988321 024667888888853
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=9.1e-06 Score=93.88 Aligned_cols=130 Identities=18% Similarity=0.115 Sum_probs=71.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----ccCeEEEEecCCCCCCCCCHHHHHH
Q 045930 28 TGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL-----DYGGVAYVTQENIMLGTLTVRETIA 102 (661)
Q Consensus 28 s~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~l~ 102 (661)
|+.+++|+.++|+|++|+|||||++.|++.... ....|+| .+|..... ..+.+.+..|...+... +++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~---- 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHR---- 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEE----
Confidence 346788999999999999999999999976432 1135655 34432210 01233333332221110 000
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 045930 103 YSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182 (661)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~ 182 (661)
....|+. |. ...+ .......-..+.-++++| |+.|+|..+.
T Consensus 76 -----------------------------~nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 76 -----------------------------VFLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp -----------------------------EEEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred -----------------------------EEEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 0122321 11 1111 112222335678889999 9999998766
Q ss_pred HHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 183 FFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 183 ~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+.++.+.+.+..+|+++|...
T Consensus 117 ----~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 ----RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ----HHHHHHHHTTCCEEEEEECGG
T ss_pred ----HHHHHHHHccCCEEEEecCCc
Confidence 334444456888888898853
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=78.96 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=27.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.7e-05 Score=77.41 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=27.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-++++|++++|+|+||||||||.+.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999999999753
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=79.59 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=68.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
++.+++++||+||||||++..|++.+... .++|. ++.-|.. . ....|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVl--------------lv~~D~~--r-~~a~eqL~---------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVG--------------LVAADVY--R-PAAYDQLL---------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEE--------------EEEECCS--C-HHHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEE--------------EEecCcc--c-hhHHHHHH----------
Confidence 58899999999999999999999876531 23333 3332210 0 01122222
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPT-SG--LDSAAAFFVVKIL 189 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPt-sG--LD~~~~~~i~~~L 189 (661)
..-+..|+.-.... .+..--+--+-+++.+...+++++|+|+|- .+ .|.....++.+.+
T Consensus 146 -----------~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 146 -----------QLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp -----------HHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred -----------HHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 22233343211100 011111222234555555689999999997 34 7877777766665
Q ss_pred HHHHhcCCEEEEEecC
Q 045930 190 KNIAHDGRTIISSIHQ 205 (661)
Q Consensus 190 ~~la~~g~tvi~s~Hq 205 (661)
+.+..+...+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 5554344445555554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.54 E-value=1.3e-05 Score=78.15 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=31.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG 72 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g 72 (661)
.++|++++|+|+||||||||++.|++.+++. .|.|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEec
Confidence 5789999999999999999999999987531 45555543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.53 E-value=9.4e-05 Score=76.79 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46789999999999999999999999865
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.51 E-value=3.3e-05 Score=75.48 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=26.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998765
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.4e-05 Score=70.48 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=25.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
++.++.+.+| +.+|+|||||||||+|++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455566666 999999999999999999973
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.50 E-value=3.6e-05 Score=72.51 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.3e-05 Score=72.23 Aligned_cols=35 Identities=37% Similarity=0.583 Sum_probs=28.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~ 73 (661)
.+|++++|+||||||||||+++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 479999999999999999999999863 44555543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=2.6e-05 Score=77.83 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 148 SGGEKKRLSIALEILTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 148 SgGerqRvsIa~aL~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-+++++|.--+...+.+++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456555542 33578999999999966 68777665555544443333356666654444555556654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.42 E-value=2.7e-05 Score=82.42 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++.+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.40 E-value=2.7e-05 Score=87.71 Aligned_cols=42 Identities=40% Similarity=0.445 Sum_probs=34.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee-EEE-ECCee
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG-NVL-LNGKK 74 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G-~i~-~~g~~ 74 (661)
.+++|++++|+|+||||||||+++|+|++.+. .| ++. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47799999999999999999999999998652 44 564 77654
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00027 Score=77.58 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=29.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-|+.+.+-+++|+++.|.|++|+|||||.--++..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 46666666899999999999999999998777753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00017 Score=75.23 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=35.7
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 162 LTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 162 ~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
..+|++|++||+-. ..|..+...+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35799999999865 234477888888888887778778888776543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.34 E-value=7.6e-05 Score=81.51 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=28.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
+.+.+|++++|+|||||||||||++|++...+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999998755
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=69.93 Aligned_cols=24 Identities=42% Similarity=0.553 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.-+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999764
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.18 E-value=3.9e-05 Score=82.07 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=31.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00048 Score=70.20 Aligned_cols=28 Identities=36% Similarity=0.628 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.++.-+.|.||+|+|||||+++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567779999999999999999999864
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00025 Score=69.40 Aligned_cols=30 Identities=37% Similarity=0.447 Sum_probs=25.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 455566665 999999999999999999864
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00079 Score=66.99 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH---------QPSSEVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~H---------q~~~~i~~~~D~v~lL~ 221 (661)
+|+++++||--. |+. .+++.++.+++.|..||++-| .++..+..++|.|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 653 356677778778999999999 66778899999999875
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00057 Score=64.32 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0048 Score=61.18 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=28.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecC
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD--GRTIISSIHQ 205 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~s~Hq 205 (661)
.+|+++++..+.+.++......+...++.+..+ ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998888886655554444443321 2577888874
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0068 Score=64.48 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=27.9
Q ss_pred eeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 24 LNGLT--GYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 24 L~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
|+.+- +=+++|+++.|.||+|+|||||...++..
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44443 35899999999999999999999887754
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00022 Score=71.18 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=27.1
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 23 LLNGLTGYAE---PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 23 iL~~vs~~i~---~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
=|.++|+++. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3677888777 999999999999999999999998765
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=68.18 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=27.7
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 24 LNGLT-GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 24 L~~vs-~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 5689999999999999999999988875
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.03 E-value=9.3e-05 Score=78.40 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=36.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
+.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999997643
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=66.36 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++|++++|+|++||||||+.+.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999763
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00032 Score=68.94 Aligned_cols=38 Identities=34% Similarity=0.546 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEE
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLL 70 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~ 70 (661)
.+.+++|+|||||||||+.+.|++.+.-.....|++..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 35689999999999999999999865321123455443
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00071 Score=66.38 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=30.9
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCE-EEEEecCC
Q 045930 163 TRPQLLFLDEPTSGL-DSAAAFFVVKILKNIAHDGRT-IISSIHQP 206 (661)
Q Consensus 163 ~~P~lllLDEPtsGL-D~~~~~~i~~~L~~la~~g~t-vi~s~Hq~ 206 (661)
.+|.++++||.-.-- +......+.+.+....+.++. +|++++.+
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965422 233367788888888776665 77777764
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00018 Score=76.48 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=29.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEEC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLN 71 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~ 71 (661)
+++.+++|+|++|||||||+|.|+|...+. .|+|.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~ 108 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVL 108 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEE
Confidence 458899999999999999999999976442 3555443
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00079 Score=72.01 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=27.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~La 55 (661)
+++..+.+.+| +++|.|||||||||+|++|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46677787776 99999999999999999987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00038 Score=67.66 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=26.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998663
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00096 Score=72.99 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC------CC---CceeeEEEECCeec
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS------GN---VVMTGNVLLNGKKR 75 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~------~~---~~~~G~i~~~g~~~ 75 (661)
.++|+|+||+|||||+|.|+|... ++ -...|.+.++|.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 789999999999999999999742 00 02468888998753
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0041 Score=66.00 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00046 Score=66.01 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=26.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999975
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0002 Score=80.74 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=38.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG 72 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g 72 (661)
.+++++++.+ +|+.++|+||||+|||||+++|++...+ ..|.|..+|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEecc
Confidence 3667778777 8999999999999999999999998754 356665544
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.014 Score=64.84 Aligned_cols=171 Identities=18% Similarity=0.146 Sum_probs=87.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHH
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIA 102 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 102 (661)
-|+.+.+-+.+|+++.|.|++|+|||||+--++-..... .| ..+.|+.=+ ++..+.+.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g-------------~~vl~~s~E------~s~~~l~~ 288 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MG-------------KKVGLAMLE------ESVEETAE 288 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SC-------------CCEEEEESS------SCHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cC-------------CcEEEEecc------CCHHHHHH
Confidence 455555558999999999999999999987776432210 11 124454332 34444332
Q ss_pred H--HHhcCCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCC
Q 045930 103 Y--SAHLRLPSNMNNEEIT-----DVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEP 173 (661)
Q Consensus 103 ~--~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEP 173 (661)
= +.....+....+.... +..+++.+.+ +.+ .+-.+-+ ...+++-. +-+..++.++ .+|+++++|=-
T Consensus 289 r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~-~~l~i~~-~~~~~~~~--~i~~~i~~~~~~~~~~lvVID~l 363 (503)
T 1q57_A 289 DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL-FGN-DTFHLYD-SFAEAETD--RLLAKLAYMRSGLGCDVIILDHI 363 (503)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHH-HTT-TCEEEEC-CC---CHH--HHHHHHHHHHHTTCCSEEEEECT
T ss_pred HHHHHHcCCChhhccccccCCCCHHHHHHHHHHH-hcc-CCEEEEC-CCCCCCHH--HHHHHHHHHHHhcCCCEEEEccc
Confidence 1 1112211110000000 0111222222 110 0111100 00113333 3344445554 36999999954
Q ss_pred CCCC-------CH-HHHHHHHHHHHHHHhc-CCEEEEEecCCc---------------------hHHHhhcCeEEEEe
Q 045930 174 TSGL-------DS-AAAFFVVKILKNIAHD-GRTIISSIHQPS---------------------SEVFALFDDLFLLS 221 (661)
Q Consensus 174 tsGL-------D~-~~~~~i~~~L~~la~~-g~tvi~s~Hq~~---------------------~~i~~~~D~v~lL~ 221 (661)
+. + +. .....+++.|+.+|++ |.+||+++|-.. ..+.+.+|-|+.|.
T Consensus 364 ~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 364 SI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp TC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred hh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence 43 2 21 2334577888888876 999999988542 13567799999986
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0006 Score=65.15 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=27.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNG 72 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g 72 (661)
.+++|+|+||||||||++.|.+.+......-|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 58899999999999999999987532111235555544
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.013 Score=61.29 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..|..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566788999999999999999999865
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00073 Score=64.58 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=20.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
..+++++|+..++. .++|+|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999998888 5689999999999999999974
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00071 Score=65.37 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 045930 36 ILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG 56 (661)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00043 Score=67.67 Aligned_cols=40 Identities=30% Similarity=0.264 Sum_probs=32.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceee--EEEECC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG--NVLLNG 72 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G--~i~~~g 72 (661)
.+++|.+++|+|++||||||+.+.|++.+.+ ..| .+.++|
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVR---DRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHH---HHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---ccCCcEEEECC
Confidence 3578999999999999999999999998653 145 555654
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0026 Score=62.93 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=40.7
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchH---------HHhhcCeEEEEe
Q 045930 162 LTRPQLLFLDEPTS----GLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSE---------VFALFDDLFLLS 221 (661)
Q Consensus 162 ~~~P~lllLDEPts----GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~---------i~~~~D~v~lL~ 221 (661)
-.+|+++++|--+. .-|.....+++..|+.++++ |.+++++.|..... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34789999986432 11445566778888888875 99999998864221 345788888875
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00026 Score=68.32 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=31.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 468899999888886 689999999999999999874
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=61.06 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0003 Score=74.68 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=34.0
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 045930 22 RLLNGLTGYAEPARI--LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578889999999998 9999999999999999999865
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=62.58 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=26.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+|.+++|+|++||||||+.+.|++.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0081 Score=59.94 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++..-+.|.||+|+|||||.++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455568899999999999999999754
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0022 Score=67.64 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 466789999999999999999999765
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=61.91 Aligned_cols=26 Identities=31% Similarity=0.564 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0012 Score=63.77 Aligned_cols=25 Identities=44% Similarity=0.563 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999864
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00078 Score=73.37 Aligned_cols=44 Identities=25% Similarity=0.178 Sum_probs=36.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCe
Q 045930 25 NGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGK 73 (661)
Q Consensus 25 ~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~ 73 (661)
+++++. +|++++++|+|||||||++..|++.+... .|+|.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 577887 89999999999999999999999987652 466666543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0015 Score=70.33 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.6
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 27 LTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 27 vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+-+.+..|..++|+|+||+|||||+|+|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456778899999999999999999999997
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0032 Score=65.52 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=30.7
Q ss_pred hhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhh
Q 045930 162 LTRPQLLFLDEPT-SGLDSAAAFFVVK-ILKNIAHDGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 162 ~~~P~lllLDEPt-sGLD~~~~~~i~~-~L~~la~~g~tvi~s~Hq~~~~i~~~ 213 (661)
+.++++|++||.- ..+|...+..++. ++.....+++.+|+|++.+..++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444544 55554345678888888876665554
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.00084 Score=67.73 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=34.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCee
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKK 74 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~ 74 (661)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.. +.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 445554 5678899999999999999999999987642 345566543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0021 Score=60.38 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.|.++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=59.97 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999764
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0054 Score=59.38 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH---------QPSSEVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~H---------q~~~~i~~~~D~v~lL~ 221 (661)
+.+++++||--- +|+. .++.+++++.+|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6543 36678888878999999998 66678999999998875
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.048 Score=58.12 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=60.94 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999863
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0022 Score=60.50 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0005 Score=72.36 Aligned_cols=40 Identities=25% Similarity=0.593 Sum_probs=35.5
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 045930 21 RRLLNGLTGYAEPARI--LAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~--~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4578888889999998 999999999999999999997643
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=63.63 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35688999999999999999999999753
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0018 Score=65.10 Aligned_cols=34 Identities=32% Similarity=0.598 Sum_probs=24.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 24 L~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++++++..++| +.|.||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555555 88999999999999999998653
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.003 Score=59.84 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.01 Score=56.85 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
++.++++||. ..++......+.+.+.+.. .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6789999995 4567766666666665532 245667777665
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=63.25 Aligned_cols=25 Identities=44% Similarity=0.696 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.042 Score=68.96 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999999988753
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0021 Score=63.84 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=28.0
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 045930 161 ILTRPQLLFLDEPTS-GLDSAAAFFVVKILKNIAHDGRTIISSIH 204 (661)
Q Consensus 161 L~~~P~lllLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~s~H 204 (661)
+..+|+++++||+-. ..+........+.+..+-..|..|+.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 446899999999763 23322223333444445556889999988
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.02 E-value=0.00083 Score=69.73 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=30.2
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 25 NG-LTGYAEPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 25 ~~-vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
++ +++..+ |++++++|++|+||||++..|++.+..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45 777765 999999999999999999999998753
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=59.60 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.015 Score=60.88 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6688999999999999999999999875
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0035 Score=63.25 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998643
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0023 Score=68.24 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=28.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+++++++.| +|+|++|+|||||+|.|.|..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 45788888877 999999999999999998864
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.021 Score=56.14 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=44.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH---------QPSSEVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~H---------q~~~~i~~~~D~v~lL~ 221 (661)
+.+++++||--- +|.. .++.+++++.+|..||++-+ .++..+.+++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6543 34778888878999999999 78889999999999886
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0046 Score=59.33 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0045 Score=58.56 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.004 Score=60.04 Aligned_cols=24 Identities=46% Similarity=0.724 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999976543
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.031 Score=58.36 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLL-DALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL-~~LaG 56 (661)
+=+.+| ++.|-||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457899 9999999999999995 44443
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0043 Score=57.41 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 045930 36 ILAVMGPSGSGKSTLLDAL 54 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~L 54 (661)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0044 Score=60.49 Aligned_cols=24 Identities=46% Similarity=0.569 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 045930 33 PARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0043 Score=58.60 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++..+.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999854
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0054 Score=59.00 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999998654
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.037 Score=55.07 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=45.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC---------CchHHHhhcCeEEEEe
Q 045930 163 TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQ---------PSSEVFALFDDLFLLS 221 (661)
Q Consensus 163 ~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq---------~~~~i~~~~D~v~lL~ 221 (661)
.+.+++++||----.| +.+.++.+++.|+.||++-++ ++.++.+++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876644 666677777789999999999 8889999999999885
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0051 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999864
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0061 Score=57.03 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 045930 35 RILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG 56 (661)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0058 Score=59.00 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0057 Score=62.98 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-..|.++.|.|||||||||+.+.|+...
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999998754
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0059 Score=58.09 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0052 Score=62.38 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0063 Score=58.22 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0032 Score=61.00 Aligned_cols=24 Identities=38% Similarity=0.767 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0063 Score=57.19 Aligned_cols=23 Identities=52% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0047 Score=58.65 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|+|++|||||||++.|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998653
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.036 Score=58.62 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999754
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0067 Score=58.62 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.019 Score=63.02 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPT-SGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPt-sGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
.+++....+...+.+++++++.... .|+.... ..+.+.|+ +.++.+|++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 3666667777788888887665544 4555543 34444443 3577888887763
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0083 Score=56.78 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0074 Score=57.05 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999764
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.07 Score=58.16 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=43.6
Q ss_pred HHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----cCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 157 IALEILTRPQLLFLDEPTS----------GLDSAAAFFVVKILKNIAH----DGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPts----------GLD~~~~~~i~~~L~~la~----~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
...|--..|.|+|+||--+ +-|......+.+.|..+-. .+..||.+|+.|.. .|.- ++..
T Consensus 267 F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA-llRp 340 (437)
T 4b4t_L 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA-LLRP 340 (437)
T ss_dssp HHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-TTST
T ss_pred HHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-HhCC
Confidence 3444556899999999743 2244445556667777642 35689999999842 2332 2345
Q ss_pred Ce---EEEecCCCC
Q 045930 223 GE---TVYFGEAKS 233 (661)
Q Consensus 223 G~---~v~~G~~~~ 233 (661)
|+ .++.+.|+.
T Consensus 341 GRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 341 GRLDRKVEIPLPNE 354 (437)
T ss_dssp TSEEEEECCCCCCH
T ss_pred CccceeeecCCcCH
Confidence 54 467777654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0073 Score=57.12 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++|+|++|+|||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0078 Score=55.09 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0088 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999864
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.021 Score=63.30 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=23.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4555668999999999999999998754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0089 Score=54.81 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999984
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0074 Score=55.32 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998864
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.056 Score=58.87 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++..=+.+-||+|+|||+|.+++|+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3444557899999999999999999864
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.099 Score=55.78 Aligned_cols=27 Identities=44% Similarity=0.715 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0075 Score=57.48 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467799999999999999999998753
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0088 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.18 Score=63.37 Aligned_cols=152 Identities=17% Similarity=0.182 Sum_probs=86.0
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 23 LLNGLT--GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 23 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
-|+.+- +=+++|+++.|.||+|+|||||.-.++..... .| ..+.|+.-+...-+
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~----~G-------------~~vlyis~E~s~~~------- 425 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP------- 425 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TT-------------CCEEEECTTSCCCH-------
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----hC-------------CCeEEEEccCchHH-------
Confidence 355554 35899999999999999999998777643211 11 23566655543211
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEPTSGLD 178 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEPtsGLD 178 (661)
+ .+.+ +|++. .+-.+-. .-++.| -+.+++.++ .+|+++++|..++=..
T Consensus 426 ~-~a~~----------------------lGvd~-~~L~i~~----~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~ 475 (1706)
T 3cmw_A 426 I-YARK----------------------LGVDI-DNLLCSQ----PDTGEQ--ALEICDALARSGAVDVIVVDSVAALTP 475 (1706)
T ss_dssp H-HHHH----------------------TTCCG-GGCEEEC----CSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred H-HHHH----------------------cCCCH-HHeEEcC----CCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhc
Confidence 0 1111 22210 0000100 012332 234555554 4799999999987654
Q ss_pred H-------------HHHHHHHHHHHHH---Hh-cCCEEEEEecCCc---------------hHHHhhcCeEEEEeCCeEE
Q 045930 179 S-------------AAAFFVVKILKNI---AH-DGRTIISSIHQPS---------------SEVFALFDDLFLLSGGETV 226 (661)
Q Consensus 179 ~-------------~~~~~i~~~L~~l---a~-~g~tvi~s~Hq~~---------------~~i~~~~D~v~lL~~G~~v 226 (661)
. ..+..+.+.+++| ++ .|.+||++.|.-. ..+...+|-++.+...+.+
T Consensus 476 ~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~ 555 (1706)
T 3cmw_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 555 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEE
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecccc
Confidence 1 1223344555555 44 4899999987521 2466789998888755443
Q ss_pred Ee
Q 045930 227 YF 228 (661)
Q Consensus 227 ~~ 228 (661)
..
T Consensus 556 ~~ 557 (1706)
T 3cmw_A 556 KE 557 (1706)
T ss_dssp EE
T ss_pred cc
Confidence 33
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.009 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.015 Score=60.64 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=31.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45788888777 8899999999999999999999875
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0099 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=57.77 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0091 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999753
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.031 Score=50.84 Aligned_cols=42 Identities=10% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP 206 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~ 206 (661)
+..++++||.- .|+...+..+.+.+.+-.+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35789999965 5788888888887776543456677777664
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0084 Score=54.43 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0094 Score=55.26 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0078 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=18.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998654
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.083 Score=57.42 Aligned_cols=28 Identities=36% Similarity=0.684 Sum_probs=23.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++..=+.+-||+|+|||+|.++||+..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444458899999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0099 Score=54.48 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999865
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.01 Score=54.56 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.01 Score=60.60 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=54.34 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=56.83 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.01 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0095 Score=54.62 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.014 Score=54.11 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999999853
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=57.98 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0094 Score=56.18 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.01 Score=56.16 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.026 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999877664
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.12 Score=65.97 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=84.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 23 LLNGLT--GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 23 iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
-|+.+- +=+++|+++.|.||+|+|||||...++..... .| ..+.|+.-+...-+ +
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~----~G-------------~~vlyis~E~s~~~---~--- 426 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EG-------------KTCAFIDAEHALDP---I--- 426 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT----TT-------------CCEEEECTTSCCCH---H---
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh----cC-------------CeEEEEEcCCCHHH---H---
Confidence 345443 35999999999999999999998777653321 11 12455544432211 0
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEIL--TRPQLLFLDEPTSGLD 178 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~--~~P~lllLDEPtsGLD 178 (661)
.+.++ |++. .+-.+-+ .-+.. +-+.+++.++ .+|+++++|.-++=..
T Consensus 427 --~a~~l----------------------Gvd~-~~L~I~~----~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 427 --YARKL----------------------GVDI-DNLLCSQ----PDTGE--QALEICDALARSGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp --HHHHT----------------------TCCT-TTCEEEC----CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred --HHHHc----------------------CCCH-HHeEEeC----CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhc
Confidence 01111 2110 0001111 12332 3345666665 4799999999876552
Q ss_pred -H------------HHHHHHHHHHHHH---Hh-cCCEEEEEecCCch---------------HHHhhcCeEEEEeCCeE
Q 045930 179 -S------------AAAFFVVKILKNI---AH-DGRTIISSIHQPSS---------------EVFALFDDLFLLSGGET 225 (661)
Q Consensus 179 -~------------~~~~~i~~~L~~l---a~-~g~tvi~s~Hq~~~---------------~i~~~~D~v~lL~~G~~ 225 (661)
. ..+..+.+.|++| ++ .|.+||++.|--.. .+...+|-++.|...+.
T Consensus 476 ~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 476 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 1 1233455666666 45 48899998774211 35677899998875543
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.011 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999863
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.011 Score=55.63 Aligned_cols=23 Identities=48% Similarity=0.599 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.015 Score=55.89 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.097 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
|-.=+.+-||+|+|||+|.+++|+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 33347889999999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=55.29 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999863
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=54.90 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.21 Score=54.50 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++.+++++|++|+||||+...|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997654
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=54.98 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.016 Score=53.84 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++++|.|+.||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.013 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.016 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998643
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=53.32 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.013 Score=57.36 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998653
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0095 Score=55.61 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 045930 33 PARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+.--++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999975
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.023 Score=60.45 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
|-.++|+|.+|+|||||+|+|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999984
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.017 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.015 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999999753
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.018 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998743
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.015 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.017 Score=59.88 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 345 58999999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.017 Score=54.40 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.019 Score=57.93 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999753
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.014 Score=59.42 Aligned_cols=23 Identities=48% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=54.62 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999764
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.015 Score=54.92 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.029 Score=54.59 Aligned_cols=37 Identities=30% Similarity=0.252 Sum_probs=30.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...+++.-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34677765554 68899999999999999999999763
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.016 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999764
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.016 Score=58.59 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|||||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.021 Score=57.08 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6678999999999999999999854
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.019 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999999764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.019 Score=59.60 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=55.83 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.018 Score=53.98 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.=-++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999999754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.017 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.016 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.018 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.018 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.015 Score=55.69 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.019 Score=54.21 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.018 Score=57.65 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.017 Score=54.55 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.018 Score=61.54 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.02 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999999753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.018 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.022 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.021 Score=57.63 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.018 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999853
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=59.05 Aligned_cols=23 Identities=39% Similarity=0.692 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|+.|||||||+|.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.023 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.024 Score=54.79 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.02 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.021 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.027 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.11 Score=56.69 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=23.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++-.=+.+.||+|+|||+|.++||+..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3455557899999999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.021 Score=58.22 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|.+|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.021 Score=54.44 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.012 Score=57.01 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.02 Score=54.69 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
=-++|+|++|+|||||++.+.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 358999999999999999999864
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.023 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.022 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.10 E-value=0.023 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.025 Score=57.91 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
...+.|.||+|+|||||.++|++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 36899999999999999999999764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.023 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999964
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.023 Score=55.64 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-.++|+|++|+|||||++.+.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.021 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999954
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.023 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.021 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.022 Score=61.01 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=34.2
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 164 RPQLLFLDEPTSGLD---SAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 164 ~P~lllLDEPtsGLD---~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
+|.++++||-=.=++ +..+..+.+.+++..+.|..++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 478888888876663 566677777777777778888888888753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.018 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.024 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.024 Score=53.62 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
--++|+|++|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999999854
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.028 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.024 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999999864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.022 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.024 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.024 Score=54.30 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999999753
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.026 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.021 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999975
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.028 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.025 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999999854
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.014 Score=60.04 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.025 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-=-++|+|++|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3467999999999999999998754
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.024 Score=56.36 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=22.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+..+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999999997653
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.036 Score=58.32 Aligned_cols=28 Identities=36% Similarity=0.614 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+++.++.|+||+|||||||-..|+..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567999999999999999999998753
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.026 Score=57.70 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 045930 34 ARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.023 Score=57.87 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.024 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988753
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.033 Score=54.66 Aligned_cols=28 Identities=43% Similarity=0.567 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999987654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.021 Score=52.97 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.033 Score=54.91 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=24.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..++..++.|+||+||||+|.-+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567789999999999999999999654
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.025 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.031 Score=53.12 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.=-++|+|++|+|||||++.+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 33458999999999999999999753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.029 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57999999999999999998753
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.033 Score=56.94 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999963
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.031 Score=54.25 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998643
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=0.033 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 479999999999999999998653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.03 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.021 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.038 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+..+.|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.028 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999863
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.028 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.034 Score=60.21 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.+.+++.|+|++||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467899999999999999999998643
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.037 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999988653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.53 E-value=0.03 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999853
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.033 Score=56.14 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.04 Score=60.42 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=29.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++.+ ..+-+|+..+|+||||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 456689999999999999999999998754
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.034 Score=51.68 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998765
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.034 Score=56.23 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.42 E-value=0.045 Score=57.03 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999765
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.04 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.04 Score=58.00 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.035 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999753
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.045 Score=53.72 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998664
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.019 Score=55.41 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.045 Score=53.91 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
.+|.++.+-|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.051 Score=52.38 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7877776666655432 13567788887753
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.052 Score=53.72 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+|.++++.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987653
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.049 Score=53.93 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.044 Score=53.19 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999754
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.042 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.043 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.028 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.08 E-value=0.035 Score=55.88 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++.+++|.|+.||||||+.+.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999987653
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.044 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.041 Score=52.68 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998753
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=93.03 E-value=0.021 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999875
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.077 Score=50.44 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=28.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+..++..-.. -.|.-++|.|+||+|||||.-.|..+
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4456665554 46889999999999999999888763
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.055 Score=52.81 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999654
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=92.87 E-value=0.053 Score=56.69 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|+||+|||||||-+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.046 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36799999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.052 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.05 Score=52.20 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.071 Score=55.37 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4588999999999999999999764
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.019 Score=57.76 Aligned_cols=22 Identities=41% Similarity=0.794 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.|.||+|+|||||.++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999854
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.33 Score=61.95 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=31.0
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 22 RLLNGLT--GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 22 ~iL~~vs--~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
..|+++. +-+++|+.+.|.||+|+|||||...+.-
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678888 5799999999999999999999988773
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.072 Score=57.31 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999754
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.08 Score=50.52 Aligned_cols=53 Identities=13% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC---------chHHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQP---------SSEVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~---------~~~i~~~~D~v~lL~ 221 (661)
+++++++||--. +|+ .+++.|+.++++|..|+++.++. ...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 36677888888899999988832 244667789887665
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=91.85 E-value=0.052 Score=57.26 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.81 E-value=0.089 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++++|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999865
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.23 Score=54.79 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=52.4
Q ss_pred cccCHHHHHHHHHHHHH--hh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 145 RGISGGEKKRLSIALEI--LT---------------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL--~~---------------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+.||||+|-.-+|++. +. .-+++++||. +-+|...+...++.++++ |.=+|+++=.
T Consensus 378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~-- 451 (483)
T 3euj_A 378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE-- 451 (483)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS--
T ss_pred CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc--
Confidence 57999999965444433 22 1257999999 999999999999999976 6666666644
Q ss_pred hHHHhhcCeEEEEe
Q 045930 208 SEVFALFDDLFLLS 221 (661)
Q Consensus 208 ~~i~~~~D~v~lL~ 221 (661)
.+....|.++.+-
T Consensus 452 -~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 -NISPERGTTYKLV 464 (483)
T ss_dssp -SCCCSSSEEEECC
T ss_pred -hhhhccCceEEEE
Confidence 4666788888775
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=91.74 E-value=0.076 Score=57.18 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEE
Q 045930 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFL 170 (661)
Q Consensus 121 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllL 170 (661)
.++++++.++.... . ..+|.+|.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666777766443 1 24889998888777777778988887
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.09 Score=55.53 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.076 Score=57.73 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.087 Score=47.87 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSS 208 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~ 208 (661)
+..+|++||.- .|+...+..+.+.|+.. ..+..+|+++..+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 44689999984 68888888888877322 124567777776543
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.1 Score=53.97 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999988763
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.034 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 35899999999999999988753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.096 Score=53.46 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++.-+.|.||+|+|||||.++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999998765
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=91.40 E-value=0.086 Score=54.77 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+++++++|| ...|+......+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888887776543 344666676654
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.1 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+||+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998654
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.023 Score=54.17 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.087 Score=59.59 Aligned_cols=33 Identities=36% Similarity=0.680 Sum_probs=26.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 30 ~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 555542 244578999999999999999999974
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=91.11 E-value=0.067 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.741 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 045930 36 ILAVMGPSGSGKSTLLDA-LAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~-LaG~ 57 (661)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=91.03 E-value=0.084 Score=58.01 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+|=-++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445899999999999999999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 661 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-32 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-30 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-29 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-28 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-27 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-27 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-26 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-26 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-24 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-24 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-24 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-20 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-19 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-05 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 6e-05 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 1e-04 | |
| d1f5na2 | 277 | c.37.1.8 (A:7-283) Interferon-induced guanylate-bi | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 2e-04 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 2e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 6e-04 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 7e-04 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 8e-04 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 0.001 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.001 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 0.002 | |
| d1kgda_ | 178 | c.37.1.1 (A:) Guanylate kinase-like domain of Cask | 0.003 | |
| d1nksa_ | 194 | c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu | 0.003 | |
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 0.004 | |
| d3adka_ | 194 | c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [ | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 123 bits (310), Expect = 2e-32
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 16/213 (7%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKR---RLDYG 80
+N L + L ++GPSG GK+T L +AG G + +
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDR 78
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG 140
++ V Q + +TV E IA+ ++ +EI + A + +E+ +R
Sbjct: 79 NISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA 135
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTI 199
+SGG+++R+++A I+ P +L +DEP S LD+ + +K + T
Sbjct: 136 Q-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
I H E + D + +++ G+ + G
Sbjct: 191 IYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPT 222
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 122 bits (308), Expect = 3e-32
Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 16/235 (6%)
Query: 7 EVTVVVPNFGSGPTR-RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNV 62
++ V + G L + + +++MGPSGSGKST+L+ + G V
Sbjct: 3 KLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV 62
Query: 63 VMTGNVLLNGKKRRLD---YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEIT 119
+ + L + +V Q+ ++ LT E + + M+ EE
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 120 DVIEEAITEMGLED-CADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLD 178
E + LE+ A+ +SGG+++R++IA + P ++ D+PT LD
Sbjct: 123 KRALECLKMAELEERFANHKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 179 SAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
S ++++LK + + G+T++ H V + + L GE + +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKLR 230
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 122 bits (306), Expect = 7e-32
Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 22/236 (9%)
Query: 7 EVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVV 63
+V FG + L+G++ + ++GP+GSGKSTL++ + G L G V
Sbjct: 6 RTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 64 MTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNN-------- 115
+ N + L + G+ Q L +TV E + S +N+
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 116 --EEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEP 173
EE+ + + + + L DR G +SGG+ K + I ++T P+++ +DEP
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEP 177
Query: 174 TSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
+G+ A + + + G T + H+ V D L+++ G+ + G
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEG 232
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 117 bits (295), Expect = 2e-30
Identities = 61/233 (26%), Positives = 111/233 (47%), Gaps = 16/233 (6%)
Query: 7 EVTVVVPNFGSGPTR-RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNV 62
+++ + F G + LN ++ + +I V+G SG+GKSTL+ + G+V
Sbjct: 3 KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV 62
Query: 63 VMTGNVL--LNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITD 120
++ G L L+ + + + Q +L + TV +A L N +E+
Sbjct: 63 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKR 119
Query: 121 VIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSA 180
+ E ++ +GL D D N +SGG+K+R++IA + + P++L DE TS LD A
Sbjct: 120 RVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 181 AAFFVVKILKNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
++++LK+I G TI+ H+ V + D + ++S GE +
Sbjct: 175 TTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 226
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 117 bits (295), Expect = 4e-30
Identities = 41/206 (19%), Positives = 81/206 (39%), Gaps = 18/206 (8%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVA 83
L + E +LA+ G +GSGK++LL + G L G + +G+ V+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSGR--------VS 100
Query: 84 YVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWH 143
+ +Q + ++ T++E I + + + + + + ++G
Sbjct: 101 FCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 156
Query: 144 WRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSI 203
+SGG++ R+S+A + L LD P LD V + +T I
Sbjct: 157 VT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 215
Query: 204 HQPSSEVFALFDDLFLLSGGETVYFG 229
+ E D + +L G + ++G
Sbjct: 216 SKM--EHLRKADKILILHQGSSYFYG 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (284), Expect = 6e-29
Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
+ G+ +I+ ++G +G+GK+T L A+AG + G ++ G + N ++
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLI 139
G+A V + + LTV E + A+ R + E I +E + L++ +L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 140 GNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTI 199
G +SGGE++ L+I +++RP+LL +DEP+ GL V ++++ I +G TI
Sbjct: 138 GT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ + ++L G+ V G+A
Sbjct: 193 LLVEQNA-LGALKVAHYGYVLETGQIVLEGKAS 224
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 110 bits (276), Expect = 2e-28
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 15/185 (8%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYG 80
+ +L +T E ++ GP+G GK+TLL ++ L + G ++ NG G
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKG 70
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG 140
+ ++ +E I+ ++V + + A L NE I +A+ + + D +
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IMDALESVEVLDLKKK--- 122
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTI 199
+S G +R+ +A +L ++ LD+P +D + V+K + I + G I
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 200 ISSIH 204
ISS
Sbjct: 180 ISSRE 184
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 110 bits (277), Expect = 4e-28
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD- 78
+ +L G++ E I ++GP+G+GK+T L ++ + +G V + GK +
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 70
Query: 79 ---YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCA 135
++Y+ +E + E + + A ++ EI +++E A GL +
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 136 DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
+ + S G ++L IA ++ P+L LDEPTSGLD A V KILK + +
Sbjct: 128 KDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
G TI+ S H EV L D + L+ G V G +
Sbjct: 183 GLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVE 218
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 109 bits (274), Expect = 1e-27
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 24/218 (11%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRLDYGG 81
L L+G IL ++GP+G+GKSTLL +AG G++ G L +L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 74
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
AY++Q+ V + + +++ T+++ + + L+D R
Sbjct: 75 -AYLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRSTNQ 125
Query: 142 WHWRGISGGEKKRLSIALEIL-------TRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH 194
+SGGE +R+ +A +L QLL LDEP + LD A + KIL +
Sbjct: 126 -----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ 180
Query: 195 DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
G I+ S H + +LL GG+ + G +
Sbjct: 181 QGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRRE 217
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 108 bits (271), Expect = 4e-27
Identities = 48/229 (20%), Positives = 101/229 (44%), Gaps = 24/229 (10%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVL------- 69
+L G++ A +++++G SGSGKST L + G +++ G +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 73
Query: 70 -----LNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE 124
+ + RL + V Q + +TV E + ++ + + +
Sbjct: 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALK 131
Query: 125 AITEMGLEDCA-DRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAF 183
+ ++G+++ A + + SGG+++R+SIA + P +L DEPTS LD
Sbjct: 132 YLAKVGIDERAQGKYPVHL-----SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 186
Query: 184 FVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
V++I++ +A +G+T++ H+ + + L G+ G+ +
Sbjct: 187 EVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPE 234
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 106 bits (267), Expect = 1e-26
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 21/214 (9%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRLDYGG 81
L + E +A +G SG GKSTL++ + ++ ++ +
Sbjct: 34 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
+ V Q++ +L + TV+E I + + EA D L
Sbjct: 94 IGLV-QQDNILFSDTVKENILL---------GRPTATDEEVVEAAKMANAHDFIMNLPQG 143
Query: 142 WHWR------GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
+ +SGG+K+RLSIA L P +L LDE TS LD + + + L +
Sbjct: 144 YDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SK 202
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
RT + H+ S D + ++ G V G
Sbjct: 203 DRTTLIVAHRLS--TITHADKIVVIENGHIVETG 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (264), Expect = 4e-26
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 14/221 (6%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNG 72
+ + P +L GLT P + A++GP+GSGKST+ L + +G ++ L
Sbjct: 21 YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQ 80
Query: 73 KKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITE---M 129
+ R + VA V QE + +++E IAY L EEIT ++
Sbjct: 81 YEHRYLHRQVAAVGQE-PQVFGRSLQENIAYG----LTQKPTMEEITAAAVKSGAHSFIS 135
Query: 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
GL D + +SGG+++ +++A ++ +P +L LD+ TS LD+ + V ++L
Sbjct: 136 GLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 194
Query: 190 KNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
R+++ S + D + L GG G
Sbjct: 195 YESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGG 233
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 101 bits (252), Expect = 1e-24
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 16/216 (7%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLN----GKKRRL 77
+ ++ + + ++GPSG GK+T L +AG S + G+ L+ G
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
+A V Q + +TV + IA+ LR + +EI + E +GL + +R
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR 135
Query: 138 LIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDG 196
+SGG+++R+++ I+ +PQ+ +DEP S LD+ + LK + G
Sbjct: 136 KPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
T I H E + D + +++ G G
Sbjct: 191 VTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 100 bits (251), Expect = 1e-24
Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 14/221 (6%)
Query: 14 NFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLL 70
+F + ++L ++ A+P I+A GPSG GKST+ L +G + + G +
Sbjct: 8 DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67
Query: 71 NGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMG 130
N + +V ++ + T+RE + Y L + +E++ V++ A
Sbjct: 68 NISLENW-RSQIGFV-SQDSAIMAGTIRENLTY----GLEGDYTDEDLWQVLDLAFARSF 121
Query: 131 LEDCADRLIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKI 188
+E+ D+L RG ISGG+++RL+IA L P++L LDE T+ LDS + V K
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 189 LKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
L ++ GRT + H+ S+ V A D ++ + G+ G
Sbjct: 182 LDSL-MKGRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSG 219
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 100 bits (250), Expect = 2e-24
Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 13/214 (6%)
Query: 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRL 77
+ +L+ + + ++ ++G SGSGKSTL + V+ L
Sbjct: 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNW 74
Query: 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADR 137
V V Q+N++L ++ + I+ + M+ E++ + A + + +
Sbjct: 75 LRRQVGVVLQDNVLLN-RSIIDNISLA-----NPGMSVEKVIYAAKLAGAHDFISELREG 128
Query: 138 LIGNWHWRG--ISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
+G +SGG+++R++IA ++ P++L DE TS LD + +++ + I
Sbjct: 129 YNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK- 187
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
GRT+I H+ S D + ++ G+ V G
Sbjct: 188 GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQG 219
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 98.9 bits (246), Expect = 6e-24
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 14/212 (6%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRLDYGG 81
+ + +GPSG GKSTLL +AG ++ + G +N
Sbjct: 16 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG-- 73
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
V V Q + L+V E +++ L E I + + + L DR
Sbjct: 74 VGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKA 130
Query: 142 WHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRTII 200
+SGG+++R++I ++ P + LDEP S LD+A + + + GRT+I
Sbjct: 131 -----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 185
Query: 201 SSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
H E L D + +L G G+
Sbjct: 186 YVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPL 216
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 98.0 bits (244), Expect = 2e-23
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 20/214 (9%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAG--RLSGNVVMTGNVLLNGKKRRLDYGG 81
L + + +A++G SGSGKST+ + + ++ L
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90
Query: 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGN 141
VA V+Q N+ L TV IAY+ + E+I EEA D +++
Sbjct: 91 VALVSQ-NVHLFNDTVANNIAYA----RTEEYSREQI----EEAARMAYAMDFINKMDNG 141
Query: 142 WHWR------GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD 195
+SGG+++R++IA +L +L LDE TS LD+ + + L +
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 200
Query: 196 GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229
RT + H+ S D++ ++ G V G
Sbjct: 201 NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERG 232
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 92.5 bits (229), Expect = 1e-21
Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 16/224 (7%)
Query: 15 FGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVL-- 69
F G L+ + E ++GPSG+GK+T + +AG +G + ++
Sbjct: 13 FKKGKVV-ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71
Query: 70 LNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM 129
+ + V Q + LT E IA+ M+ EEI +EE +
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKIL 128
Query: 130 GLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKIL 189
+ + R +SG +++R+++A ++ P LL LDEP S LD+ ++
Sbjct: 129 DIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 190 KNIA-HDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
K + G T++ H P +++FA+ D + +L G+ V G+ +
Sbjct: 184 KEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 88.2 bits (218), Expect = 3e-20
Identities = 45/213 (21%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYG 80
L+ L+ E ++GP+G+GK+ L+ +AG SG +++ G + + + D
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 81 GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIG 140
+V Q + + V++ + + +R+ + + + + ++ +E DR
Sbjct: 76 ---FVYQNYSLFPHMNVKKNLEF--GMRMKKIKDPKRV----LDTARDLKIEHLLDR--- 123
Query: 141 NWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRTI 199
+ +SGGE++R+++A ++T P++L LDEP S LD ++L + + T+
Sbjct: 124 --NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 200 ISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232
+ H +E + D + ++ G+ + G+ +
Sbjct: 182 LHITHDQ-TEARIMADRIAVVMDGKLIQVGKPE 213
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 85.8 bits (212), Expect = 2e-19
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRL---SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIML 92
++GP+G+GKS L+ +AG + G V + G + R G+ +V Q+ +
Sbjct: 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR---GIGFVPQDYALF 82
Query: 93 GTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152
L+V IAY N+ E + E ++G+ DR SGGE+
Sbjct: 83 PHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPARL-----SGGER 132
Query: 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIA-HDGRTIISSIHQPSSEVF 211
+R+++A ++ +P+LL LDEP S +D +++ L+ + I+ H E
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAA 191
Query: 212 ALFDDLFLLSGGETVYFGEAK 232
L D++ ++ G V G+ K
Sbjct: 192 MLADEVAVMLNGRIVEKGKLK 212
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 52.7 bits (125), Expect = 2e-08
Identities = 21/194 (10%), Positives = 49/194 (25%), Gaps = 34/194 (17%)
Query: 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLT 96
+ + G G GK+TL+ + RL
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRA------------------------------IGFW 32
Query: 97 VRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156
E R + E I + + + ++ +
Sbjct: 33 TEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE-ELAIPILERA 91
Query: 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216
R +++ +DE + F + + + ++++I +V L +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKE 148
Query: 217 LFLLSGGETVYFGE 230
+ L G +
Sbjct: 149 IRRLPGAVLIELTP 162
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 24/178 (13%), Positives = 49/178 (27%), Gaps = 13/178 (7%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRL--SGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM 91
AR + + GP G GK+TL+ + L SG V + R V ++
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 92 LGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGG- 150
L + + ++ + + G G
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGP----GQRVCVIDEIGK 116
Query: 151 ----EKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIH 204
+ + + L+ P + L A V+ ++N ++ +
Sbjct: 117 MELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLAL--VEEIRNRKDVKVFNVTKEN 172
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 41.9 bits (97), Expect = 6e-05
Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 15/173 (8%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVV----------MTGNVLLNGKKRRLDYGGVAY 84
IL + G GSGKST+ +ALA V + + + +
Sbjct: 5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIM 64
Query: 85 VTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
++ + +R + + + + +R +
Sbjct: 65 QIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGD 124
Query: 145 RGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGR 197
L L + L SG D+ ++ N GR
Sbjct: 125 SLSDPLVVADLHSQFADLGAFEHHVLP--VSGKDTDQ---ALQSAINALQSGR 172
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL 69
++ + GP+G GKST LA +L + + G+++
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 1e-04
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 24 LNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66
L L+ +P ++A++G +GKS L++ LAG+ G + +
Sbjct: 22 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGST 64
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 7/137 (5%)
Query: 87 QENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW-R 145
+ + + + + + + N +T E+ G++ A + +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 146 GISGGEKKRLSIALEI----LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIIS 201
+SGGEK ++AL LDE + LD + ++ + I
Sbjct: 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIV 391
Query: 202 SIHQPSSEVFALFDDLF 218
+ +F D L
Sbjct: 392 ISLKN--TMFEKSDALV 406
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTG 66
R++ + G S +GKS ++ L L + G
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMT 65
I +MG SGSGKS + +A +L +
Sbjct: 7 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 37
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 33/243 (13%), Positives = 67/243 (27%), Gaps = 24/243 (9%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGN-VVMTGNVLLNGKKRRLDY 79
L+ G P L + G GSGK++L A+ GN +V+ + +
Sbjct: 20 EELIQGKKAVESPTAFL-LGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDEL 78
Query: 80 G---GVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCAD 136
V +T S TDV + T + +
Sbjct: 79 VKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYET 138
Query: 137 RLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDG 196
++ + L + R + ++ D A + + +
Sbjct: 139 KMYVMAVPKIN---------SYLGTIERYETMYAD-----DPMTARATPKQAHDIVVKNL 184
Query: 197 RTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTFFAEAGFPCPTRRNPSDHFL 256
T + ++H+ LF D+ L + + ++ E R+
Sbjct: 185 PTNLETLHKT-----GLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKEIQ 239
Query: 257 RCI 259
+
Sbjct: 240 PTL 242
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.7 bits (89), Expect = 8e-04
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSG 60
+ V+G SGK+TL++
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (90), Expect = 0.001
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58
+LL+ + Y L V G G+GKST L+A L
Sbjct: 41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 78
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (87), Expect = 0.001
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRLSGNV 62
+R + + GPSG+GKSTLL L +
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSF 29
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 38.0 bits (87), Expect = 0.002
Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 6/143 (4%)
Query: 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTL 95
I+ +G +GSGK+TL L N + +N + + +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKV---AYVNLDTGVKELPYEPSIDVREFVTVEE 58
Query: 96 TVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRL 155
+RE + + + E+ + + + + D + +
Sbjct: 59 IMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFL---FHEFG 115
Query: 156 SIALEILTRPQLLFLDEPTSGLD 178
+E L P ++++ +P
Sbjct: 116 VRLMENLPYPLVVYISDPEILKK 138
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (84), Expect = 0.003
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGN 61
+ L ++G G G+ + + L +
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDR 30
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 36.9 bits (84), Expect = 0.003
Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 9/110 (8%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGT 94
+I V G G GKST+L + L + ++YG T +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ---------GINNKIINYGDFMLATALKLGYAK 52
Query: 95 LTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHW 144
+ + I + D + +
Sbjct: 53 DRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGY 102
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.8 bits (84), Expect = 0.004
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 35 RILAVMGPSGSGKSTLLDALAGRLSGNV 62
R + + GPSG+GKSTLL L S
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIF 28
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 36.5 bits (83), Expect = 0.004
Identities = 24/133 (18%), Positives = 39/133 (29%)
Query: 34 ARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLG 93
++I+ V+G GSGK T + + + + TG++L G + E L
Sbjct: 8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLV 67
Query: 94 TLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153
L + A + I E E + + K
Sbjct: 68 PLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTK 127
Query: 154 RLSIALEILTRPQ 166
RL E R
Sbjct: 128 RLLKRGETSGRVD 140
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 661 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.57 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.2 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.11 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.8 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.77 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.23 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.01 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.68 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.31 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.29 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.16 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.14 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.09 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.08 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.06 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.04 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.03 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.85 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.85 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.72 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.7 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.64 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.61 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.52 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.51 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.48 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.47 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.46 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.46 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.43 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.35 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.3 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.28 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.2 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.17 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.11 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.09 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.08 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.04 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.02 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.99 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.94 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.94 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.93 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.89 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.86 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.83 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.8 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.8 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.76 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.72 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.67 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.64 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.62 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.55 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.54 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.42 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.41 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.41 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.34 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.34 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.34 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.32 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.31 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.27 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.19 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.14 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.14 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.13 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.13 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.05 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.05 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.03 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.01 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.99 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.97 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.79 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.78 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.77 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.77 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.73 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.72 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.69 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.69 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.66 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.57 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.52 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.45 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.44 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.36 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.36 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.31 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.28 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.2 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.18 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.11 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.1 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.1 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.1 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.03 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.01 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.97 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.95 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.89 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.74 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.74 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.72 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.71 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.7 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.66 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.65 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.63 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.62 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.54 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.54 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.51 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.46 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.43 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.4 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.36 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.34 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.28 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.25 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.25 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.23 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.22 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.16 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.13 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.1 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.08 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.99 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.93 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.87 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.84 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.75 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.7 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.68 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.62 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.52 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.49 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.43 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.41 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.31 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.26 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.21 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.18 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.17 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.15 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.08 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.05 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.04 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.97 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.87 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.83 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.74 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.74 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.68 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.56 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.51 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.5 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.46 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.43 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.43 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.33 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.29 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.26 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.26 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.13 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.0 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.97 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.82 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.66 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.54 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.45 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.29 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.76 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.42 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.19 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.19 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.16 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.95 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.52 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.4 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.01 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.79 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.61 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.49 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.9 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.82 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.61 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.29 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.75 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.25 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.44 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.34 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.49 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.9 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.86 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 80.77 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.36 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7e-54 Score=430.55 Aligned_cols=215 Identities=23% Similarity=0.373 Sum_probs=191.2
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cc
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LD 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~ 78 (661)
.++++||++.++ ++++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||++.. ..
T Consensus 6 ~I~v~nlsk~yg------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 6 EVKLENLTKRFG------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 76 (239)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEEC------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcc
Confidence 588999999885 367999999999999999999999999999999999999984 999999999853 23
Q ss_pred cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHH
Q 045930 79 YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIA 158 (661)
Q Consensus 79 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa 158 (661)
++.+|||+|++.+++.+||+||+.|.+.++ +.++++.+++++++++.+||++.+|+.+. +|||||||||+||
T Consensus 77 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRvaiA 148 (239)
T d1v43a3 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVA 148 (239)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHH
T ss_pred cceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHH
Confidence 467999999999999999999999987654 57788999999999999999999999875 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 159 LEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 159 ~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|||+.+|++|+|||||+|||+.++.++.+.|++++++ |+|||++|||+ .++.++||||++|++|++++.|+++++
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el 224 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEV 224 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred hhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999775 99999999996 689999999999999999999998764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1e-53 Score=429.76 Aligned_cols=217 Identities=25% Similarity=0.398 Sum_probs=198.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.++++||++.|+. ....+|+||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++..
T Consensus 3 ~i~v~nlsk~y~~----g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~ 75 (242)
T d1oxxk2 3 RIIVKNVSKVFKK----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75 (242)
T ss_dssp CEEEEEEEEEEGG----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEE
T ss_pred EEEEEeEEEEECC----CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchh
Confidence 5899999999863 1367999999999999999999999999999999999999884 999999998642
Q ss_pred ---cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHH
Q 045930 77 ---LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 77 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerq 153 (661)
..++.+|||+|++.++|.+||+||+.|+++.+ +.++++.+++++++++.+||++.+|++++ +|||||||
T Consensus 76 ~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQ 147 (242)
T d1oxxk2 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQ 147 (242)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHH
T ss_pred hcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChh-----hCCHHHHh
Confidence 12467999999999999999999999987654 56788899999999999999999999885 59999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAK 232 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~ 232 (661)
||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||++|||+ .++.++|||+++|++|++++.|+++
T Consensus 148 RvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~ 226 (242)
T d1oxxk2 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226 (242)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999765 99999999996 6899999999999999999999987
Q ss_pred Ch
Q 045930 233 SA 234 (661)
Q Consensus 233 ~~ 234 (661)
++
T Consensus 227 el 228 (242)
T d1oxxk2 227 DL 228 (242)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.4e-54 Score=429.94 Aligned_cols=215 Identities=25% Similarity=0.387 Sum_probs=159.6
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---ccc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~ 79 (661)
++++||++.|+ ++++|+||||++++||+++|+||||||||||||+|+|+.+++ +|+|.+||++.. ..+
T Consensus 1 Iev~nv~k~yg------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~ 71 (232)
T d2awna2 1 VQLQNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 71 (232)
T ss_dssp EEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGG
T ss_pred CEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhh
Confidence 57899999884 367999999999999999999999999999999999999884 999999998753 235
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.+|||+|++.+++.+||+||+.|++.++ +.++++.+++++++++.++|.+.+|++++ +|||||||||+|||
T Consensus 72 r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAr 143 (232)
T d2awna2 72 RGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGR 143 (232)
T ss_dssp TCEEEECSSCCC------------------------CHHHHHHHHHHHHC--------------------------CHHH
T ss_pred ceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChh-----hCCHHHHHHHHHHH
Confidence 67999999999999999999999987764 45677888999999999999999999885 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||+.+|++|+|||||+|||+.++.++++.|+++.+ .|+|||++|||+ .++.++|||+++|++|++++.|+++++.
T Consensus 144 aL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 144 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 99999999999999999999999999999999976 499999999996 6899999999999999999999987653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.1e-53 Score=424.88 Aligned_cols=215 Identities=24% Similarity=0.375 Sum_probs=197.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++||++.+. ++++|+||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++..
T Consensus 3 ~i~v~nl~k~yg------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~ 73 (240)
T d1g2912 3 GVRLVDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKG 73 (240)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGT
T ss_pred cEEEEeEEEEEC------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchh
Confidence 578999999985 367999999999999999999999999999999999999984 999999998642
Q ss_pred ----cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHH
Q 045930 77 ----LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 77 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGer 152 (661)
..++.+|||+|++.++|.+||+||+.+...++ +.++++.+++++++++.+||++.+|++++ +||||||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~LSGGqk 145 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQR 145 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHH
T ss_pred hhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHH
Confidence 12467999999999999999999999998875 46788999999999999999999998875 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++|||+ +++.++||||++|++|++++.|++
T Consensus 146 QRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~ 224 (240)
T d1g2912 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSP 224 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999876 99999999996 689999999999999999999998
Q ss_pred CCh
Q 045930 232 KSA 234 (661)
Q Consensus 232 ~~~ 234 (661)
+++
T Consensus 225 ~el 227 (240)
T d1g2912 225 DEV 227 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-52 Score=422.71 Aligned_cols=218 Identities=28% Similarity=0.389 Sum_probs=197.9
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++||++++.. ++...++|+||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++...
T Consensus 2 i~v~nlsk~y~~--~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~ 76 (240)
T d3dhwc1 2 IKLSNITKVFHQ--GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESE 76 (240)
T ss_dssp EEEEEEEEEEEC--SSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHH
T ss_pred EEEEeEEEEeCC--CCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhh
Confidence 789999999874 122346899999999999999999999999999999999999884 9999999997521
Q ss_pred ---ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHH
Q 045930 78 ---DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.+|||+|++.+++.+||+||+.++++++ +.++++.+++++++|+.+||++.+|++++ +||||||||
T Consensus 77 ~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QR 148 (240)
T d3dhwc1 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQR 148 (240)
T ss_dssp HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHH
T ss_pred hhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHH
Confidence 1356999999999999999999999998764 45677888999999999999999998875 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
|+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||++|||+ .++..+|||+++|++|++++.|++++
T Consensus 149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~e 227 (240)
T d3dhwc1 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 227 (240)
T ss_dssp HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTT
T ss_pred HHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999876 99999999996 68999999999999999999999987
Q ss_pred h
Q 045930 234 A 234 (661)
Q Consensus 234 ~ 234 (661)
+
T Consensus 228 i 228 (240)
T d3dhwc1 228 V 228 (240)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-52 Score=416.74 Aligned_cols=217 Identities=23% Similarity=0.336 Sum_probs=193.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc-----
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL----- 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~----- 77 (661)
|+++||++.|+.. .....+|+||||++++||++||+|||||||||||++|+|+.+|+ +|+|.++|++...
T Consensus 2 I~i~nlsk~y~~~--~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~ 76 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG--EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDE 76 (230)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeEEEEeCCC--CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhh
Confidence 7899999998741 22346899999999999999999999999999999999999884 9999999987531
Q ss_pred ----ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccccccCHHHH
Q 045930 78 ----DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLED-CADRLIGNWHWRGISGGEK 152 (661)
Q Consensus 78 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSgGer 152 (661)
.++.+|||+|++.++|.+||+||+.++...+.....+.++..+++.++++.+||.+ .+|+++. +||||||
T Consensus 77 ~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~-----~LSGGqk 151 (230)
T d1l2ta_ 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----QLSGGQQ 151 (230)
T ss_dssp HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----GSCHHHH
T ss_pred cchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChh-----hCCHHHH
Confidence 12469999999999999999999999988765445678888899999999999976 5787764 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCC
Q 045930 153 KRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEA 231 (661)
Q Consensus 153 qRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~ 231 (661)
|||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |+|||++|||+ ++ .++||||++|++|++++.|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HH-HTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HH-HHhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999999999999999999999999875 99999999996 44 489999999999999999975
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-52 Score=419.14 Aligned_cols=210 Identities=23% Similarity=0.422 Sum_probs=190.1
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc---cc
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---DY 79 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---~~ 79 (661)
|+++||++.+++ .+|+||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++... .+
T Consensus 2 i~v~nlsk~y~~-------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~ 71 (229)
T d3d31a2 2 IEIESLSRKWKN-------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEK 71 (229)
T ss_dssp EEEEEEEEECSS-------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEEeCC-------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhH
Confidence 789999998742 3899999999999999999999999999999999999884 9999999998642 24
Q ss_pred CeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHH
Q 045930 80 GGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIAL 159 (661)
Q Consensus 80 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~ 159 (661)
+.+|||+|++.++|.+||+||+.|++.++. ... +++++++++.++|++.+|+.++ +|||||||||+|||
T Consensus 72 r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAr 140 (229)
T d3d31a2 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKD---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALAR 140 (229)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCC---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHH
T ss_pred hcceeeccccccCccccHHHHHHHHHhhcc---ccH---HHHHHHHHHHhcchhhHhCChh-----hCCHHHhcchhhhh
Confidence 579999999999999999999999987652 222 3578999999999999999875 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 160 EILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 160 aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|||++|||+ .++.++||||++|++|++++.|+++++
T Consensus 141 aL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el 215 (229)
T d3d31a2 141 ALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEI 215 (229)
T ss_dssp HTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHH
T ss_pred hhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999765 99999999996 689999999999999999999998764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.2e-51 Score=409.74 Aligned_cols=218 Identities=28% Similarity=0.374 Sum_probs=200.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++||++.+. +++||+||||++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 2 aI~v~nl~k~yg------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~ 72 (238)
T d1vpla_ 2 AVVVKDLRKRIG------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHE 72 (238)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHH
T ss_pred CEEEEeEEEEEC------CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHH
Confidence 378999999885 377999999999999999999999999999999999999984 9999999997532
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSI 157 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsI 157 (661)
.++.+||+||++.+++++||.||+.|.+.++ ..+.++.+++++++++.++|.+..+++++ +||||||||++|
T Consensus 73 ~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~i 144 (238)
T d1vpla_ 73 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLI 144 (238)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHH
T ss_pred HHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHH
Confidence 2467999999999999999999999988775 35678888899999999999999999886 599999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChhHH
Q 045930 158 ALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAPTF 237 (661)
Q Consensus 158 a~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~~~ 237 (661)
|+||+++|++|||||||+|||+.++.++.+.|++++++|+|||++||++ +++..+||||++|++|++++.|+++++.+.
T Consensus 145 A~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 145 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999999999999999999999999996 689999999999999999999998876553
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.1e-50 Score=411.58 Aligned_cols=216 Identities=22% Similarity=0.347 Sum_probs=193.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR----- 76 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~----- 76 (661)
.|+++||++.+. ++++|+||||++++||++||+||||||||||+++|+|+.++. +|+|.++|++..
T Consensus 2 ~Lev~nl~k~yg------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~ 72 (258)
T d1b0ua_ 2 KLHVIDLHKRYG------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDK 72 (258)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECT
T ss_pred eEEEEEEEEEEC------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCcc
Confidence 488999999884 357999999999999999999999999999999999999884 999999998742
Q ss_pred -------------cccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCc
Q 045930 77 -------------LDYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDC-ADRLIGNW 142 (661)
Q Consensus 77 -------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~ 142 (661)
..++++|||+|++.+++.+||.||+.+..... ...++++.++++.++++.+||.+. .++.++
T Consensus 73 ~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~-- 148 (258)
T d1b0ua_ 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGKYPV-- 148 (258)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG--
T ss_pred chhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhccCcc--
Confidence 11356999999999999999999999875322 245678888999999999999774 566664
Q ss_pred cccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 143 HWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 143 ~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++|||+ .++..+||||++|++
T Consensus 149 ---~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl-~~~~~~adri~vm~~ 224 (258)
T d1b0ua_ 149 ---HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQ 224 (258)
T ss_dssp ---GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEET
T ss_pred ---cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCH-HHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999999999999999996 689999999999999
Q ss_pred CeEEEecCCCCh
Q 045930 223 GETVYFGEAKSA 234 (661)
Q Consensus 223 G~~v~~G~~~~~ 234 (661)
|++++.|+++++
T Consensus 225 G~iv~~g~~~ev 236 (258)
T d1b0ua_ 225 GKIEEEGDPEQV 236 (258)
T ss_dssp TEEEEEECHHHH
T ss_pred CEEEEEcCHHHH
Confidence 999999998765
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.2e-50 Score=407.74 Aligned_cols=214 Identities=26% Similarity=0.417 Sum_probs=190.6
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
-|+.+||++.+. ++++|+||||++++||+++|+||||||||||+|+|+|+++++ +|+|.++|++...
T Consensus 6 ~Lev~~l~k~yg------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 6 VLEVQSLHVYYG------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred EEEEeeEEEEEC------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHH
Confidence 579999999884 367999999999999999999999999999999999999884 9999999997532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccccccCHHHHHH
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEM-GLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.+..++|+||+..+++.+||+||+.+.+..+ ..++..++.++++++.+ +|++.+|+.++ +||||||||
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qr 147 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQM 147 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHH
T ss_pred HHHHhcccccCcccccCCcccHHHHHHHHHHhc----CCHHHHHHHHHHHHHHhhChHHHHhCchh-----hCCHHHHHH
Confidence 1345999999999999999999998876543 22344556677888877 78888998886 499999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+|||||+.+|++|||||||+|||+.++.++.+.|++++++|+|||+++|+. +++.++||||++|++|++++.|+++++
T Consensus 148 v~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el 226 (240)
T d1ji0a_ 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999999999999999996 689999999999999999999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.4e-50 Score=407.14 Aligned_cols=218 Identities=23% Similarity=0.339 Sum_probs=192.9
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
-|+.+||++.+. .+++|+||||++++||++||+||||||||||+|+|+|+++++ +|+|.++|++...
T Consensus 4 iL~v~nlsk~yg------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 4 ILRTENIVKYFG------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 74 (254)
T ss_dssp EEEEEEEEEEET------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred eEEEEEEEEEEC------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHH
Confidence 478999999875 367999999999999999999999999999999999999884 9999999997532
Q ss_pred --ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCcccc
Q 045930 78 --DYGGVAYVTQENIMLGTLTVRETIAYSAHLRL----------PSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWR 145 (661)
Q Consensus 78 --~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~ 145 (661)
.+..++|+||++.+++.+||.||+.++...+. .....+++..++++++++.+++.+.+|+.++
T Consensus 75 ~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 149 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG----- 149 (254)
T ss_dssp HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred HHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh-----
Confidence 13459999999999999999999998754321 1112345566789999999999999999886
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 045930 146 GISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGET 225 (661)
Q Consensus 146 ~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~ 225 (661)
.|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++|+|||+++||. +++.++||||++|++|++
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl-~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhCCEEEEEeCCEE
Confidence 4999999999999999999999999999999999999999999999998899999999997 589999999999999999
Q ss_pred EEecCCCCh
Q 045930 226 VYFGEAKSA 234 (661)
Q Consensus 226 v~~G~~~~~ 234 (661)
++.|++++.
T Consensus 229 v~~g~~~e~ 237 (254)
T d1g6ha_ 229 IAEGRGEEE 237 (254)
T ss_dssp EEEEESHHH
T ss_pred EEEecHHHH
Confidence 999987654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-49 Score=398.40 Aligned_cols=194 Identities=27% Similarity=0.452 Sum_probs=178.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc---cccCeEEEEecCCCCCCCCCHHHHHH
Q 045930 26 GLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR---LDYGGVAYVTQENIMLGTLTVRETIA 102 (661)
Q Consensus 26 ~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~ 102 (661)
||||++. ||+++|+||||||||||+++|+|+++|. +|+|.+||++.. ..++.+|||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 8999995 6899999999999999999999999984 999999999753 23567999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 045930 103 YSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAA 182 (661)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~ 182 (661)
|+++ ..++.+.+++++++++.+||++.+|+++. +|||||||||+|||||+.+|++|+|||||+|||+.++
T Consensus 93 ~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~ 162 (240)
T d2onka1 93 YGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162 (240)
T ss_dssp TTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred hhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCChh-----hCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHH
Confidence 8742 35678888999999999999999999875 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 183 FFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 183 ~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
..+.+.|++++++ |.|||++|||+ .++.++|||+++|++|++++.|+++++
T Consensus 163 ~~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el 214 (240)
T d2onka1 163 GVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHH
Confidence 9999999999875 99999999996 689999999999999999999998765
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-47 Score=382.96 Aligned_cols=217 Identities=24% Similarity=0.411 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++|+|+++.|+. ..+.+|+||||++++||.+||+||||||||||+++|+|++++. +|+|.+||++...
T Consensus 1 eI~~~nvsf~Y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 73 (241)
T d2pmka1 1 DITFRNIRFRYKP----DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 73 (241)
T ss_dssp EEEEEEEEEESST----TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CeEEEEEEEEeCC----CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchh
Confidence 4789999999863 2467999999999999999999999999999999999999884 9999999998642
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HHHHc-CCCccccccccCccccccCHHHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEE--AITEM-GLEDCADRLIGNWHWRGISGGEKK 153 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~--~l~~l-gL~~~~d~~vg~~~~~~LSgGerq 153 (661)
.++.++||+|++.+|+ .||+||+.+... ..+.++..+..+. +.+.+ .+....++.+|. ....|||||||
T Consensus 74 ~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LSGGq~Q 146 (241)
T d2pmka1 74 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQ 146 (241)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCCHHHHH
T ss_pred hhhceEEEEecccccCC-ccccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccCHHHHH
Confidence 2467999999998876 599999987521 2333333222211 12222 234556777764 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCC
Q 045930 154 RLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKS 233 (661)
Q Consensus 154 RvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~ 233 (661)
||+|||||+.+|+||+||||||+||+.++..+++.|+++.+ |+|||++||++. ..+.||+|++|++|++++.|++++
T Consensus 147 RvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~G~Iv~~G~~~e 223 (241)
T d2pmka1 147 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKE 223 (241)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEETTEEEEEECHHH
T ss_pred HHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999975 899999999973 447899999999999999999765
Q ss_pred hh
Q 045930 234 AP 235 (661)
Q Consensus 234 ~~ 235 (661)
+.
T Consensus 224 ll 225 (241)
T d2pmka1 224 LL 225 (241)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-47 Score=390.21 Aligned_cols=219 Identities=29% Similarity=0.425 Sum_probs=180.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++||++.|++ .+++.+|+||||++++||++||+||||||||||+++|+|+++|. +|+|.+||++...
T Consensus 11 ~I~~~nvsf~Y~~---~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~ 84 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN---RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHR 84 (251)
T ss_dssp CEEEEEEEECCTT---STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEECCC---CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhH
Confidence 4899999998864 23467999999999999999999999999999999999999984 9999999998532
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccccccCHHH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVI-----EEAITEMGLEDCADRLIGNWHWRGISGGE 151 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSgGe 151 (661)
.++.++||+|++.+|+ .||+||+.++... .....+..+.. .+.++ +|.+..++.++. ....|||||
T Consensus 85 ~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~~LSGGq 156 (251)
T d1jj7a_ 85 YLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGSQLSGGQ 156 (251)
T ss_dssp HHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCSSSCHHH
T ss_pred HHHHHhhhccccccccC-cchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCccCChhH
Confidence 2467999999999886 4999999986432 12222222211 12222 455566777764 346799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 152 KKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHD-GRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 152 rqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
||||+|||||+.+|+||+||||||+||+.+...+++.|+++.++ |+|||++||++ + ..+.||+|++|++|++++.|+
T Consensus 157 kQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~-~~~~aDrI~vl~~G~iv~~Gt 234 (251)
T d1jj7a_ 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-S-LVEQADHILFLEGGAIREGGT 234 (251)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-H-HHHTCSEEEEEETTEEEEEEC
T ss_pred ceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-H-HHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999765 89999999996 3 457799999999999999999
Q ss_pred CCChhH
Q 045930 231 AKSAPT 236 (661)
Q Consensus 231 ~~~~~~ 236 (661)
+++..+
T Consensus 235 ~~eLl~ 240 (251)
T d1jj7a_ 235 HQQLME 240 (251)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.8e-48 Score=391.70 Aligned_cols=217 Identities=27% Similarity=0.448 Sum_probs=178.0
Q ss_pred EEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecc-----c
Q 045930 3 LVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRR-----L 77 (661)
Q Consensus 3 l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~-----~ 77 (661)
|+++||++.|++ .+.+|+||||++++||++||+||||||||||+++|+|+++|. +|+|.+||++.. .
T Consensus 2 le~knvsf~Y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 73 (242)
T d1mv5a_ 2 LSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73 (242)
T ss_dssp EEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEECCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHH
Confidence 789999998853 357999999999999999999999999999999999999984 999999999753 2
Q ss_pred ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--HH-cCCCccccccccCccccccCHHHHHH
Q 045930 78 DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAI--TE-MGLEDCADRLIGNWHWRGISGGEKKR 154 (661)
Q Consensus 78 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l--~~-lgL~~~~d~~vg~~~~~~LSgGerqR 154 (661)
.++.+|||+|++.+|+. ||+||+.+.... ..+.++..+..+... +. ..+.+..++.+|+ ....||||||||
T Consensus 74 ~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~LSGGqkQR 147 (242)
T d1mv5a_ 74 WRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQR 147 (242)
T ss_dssp CTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHH
T ss_pred HHhheEEEccccccCCc-chhhheeccccc----ccchhhHHHHHHHHHhhhhhccCcccccccccC-CCCCCCHHHHHH
Confidence 35679999999999887 999999765321 233333322222211 11 1334566777765 345799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCCh
Q 045930 155 LSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSA 234 (661)
Q Consensus 155 vsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~ 234 (661)
|+|||||+.+|+||+||||||+||+.++..+++.|+++++ |+|||++||++ +.+ ..||+|++|++|++++.|++++.
T Consensus 148 v~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~-~~~D~i~vl~~G~iv~~G~~~eL 224 (242)
T d1mv5a_ 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNEL 224 (242)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCH-HHH-HhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999974 89999999996 344 56999999999999999998775
Q ss_pred hH
Q 045930 235 PT 236 (661)
Q Consensus 235 ~~ 236 (661)
.+
T Consensus 225 l~ 226 (242)
T d1mv5a_ 225 VA 226 (242)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.4e-47 Score=383.86 Aligned_cols=215 Identities=27% Similarity=0.373 Sum_probs=179.1
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.|+++||++.|+. ..+.+|+||||+|++||++||+||||||||||+++|+|+++|. +|+|.+||.+...
T Consensus 13 ~I~~~nvsf~Y~~----~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 13 DLEFRNVTFTYPG----REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 85 (253)
T ss_dssp CEEEEEEEECSSS----SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHH
T ss_pred EEEEEEEEEEeCC----CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhh
Confidence 4899999998863 2357999999999999999999999999999999999999984 8999999998542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLE-------DCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+++. |+++|+.++. +...+.++ ++++++..++. +-.|+.+|. ....|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSG 155 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSG 155 (253)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCH
T ss_pred hhhheEEEEeeccccCCc-chhhhhhhcC----cccCCHHH----HHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCH
Confidence 24579999999988865 9999998752 12234433 44444444433 345666764 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||||||+|||||+.+|+||+||||||+||+.++..+++.|+++.+ ++|||++||++. ..+.||+|++|++|++++.|
T Consensus 156 GqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~G~Iv~~G 232 (253)
T d3b60a1 156 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERG 232 (253)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999975 899999999973 44789999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
+++++.+
T Consensus 233 ~~~eLl~ 239 (253)
T d3b60a1 233 THSELLA 239 (253)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9876543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.3e-46 Score=382.42 Aligned_cols=214 Identities=27% Similarity=0.395 Sum_probs=180.3
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeeccc----
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRL---- 77 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~---- 77 (661)
.++++|+++.|+. ..+.+|+|||++|++||++||+||||||||||+++|+|++++. +|+|.++|.+...
T Consensus 16 ~I~~~nvsf~Y~~----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 16 RIDIDHVSFQYND----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CEEEEEEEECSCS----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred EEEEEEEEEEeCC----CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHH
Confidence 4899999998864 2357999999999999999999999999999999999999984 9999999998542
Q ss_pred -ccCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccccccCH
Q 045930 78 -DYGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGL-------EDCADRLIGNWHWRGISG 149 (661)
Q Consensus 78 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSg 149 (661)
.++.++||+|++.+|+. ||+|||.++. + ..+.++ +.++++..++ .+..|+.+|+ ....|||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~----~-~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSg 157 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSG 157 (255)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCH
T ss_pred HhhheeeeeeccccCCCC-CHHHHHhccC----c-CCCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCcCH
Confidence 24679999999988864 9999998762 1 223333 4455555554 3456777765 3467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
|||||++|||||+.+|++|+||||||+||+.+...+++.|+++.+ ++|||++||++. ....||+|++|++|++++.|
T Consensus 158 Gq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~G~iv~~G 234 (255)
T d2hyda1 158 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIENGHIVETG 234 (255)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 799999999974 45789999999999999999
Q ss_pred CCCChhH
Q 045930 230 EAKSAPT 236 (661)
Q Consensus 230 ~~~~~~~ 236 (661)
++++..+
T Consensus 235 ~~~eLl~ 241 (255)
T d2hyda1 235 THRELIA 241 (255)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9876543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.2e-44 Score=358.33 Aligned_cols=205 Identities=28% Similarity=0.399 Sum_probs=177.0
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccc---
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLD--- 78 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~--- 78 (661)
-|+.+|++. ..+|+||||+|++||++||+||||||||||+++|+|+.+ .+|+|.++|++....
T Consensus 3 il~~~dv~~----------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~----~~G~I~~~g~~i~~~~~~ 68 (231)
T d1l7vc_ 3 VMQLQDVAE----------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSAT 68 (231)
T ss_dssp EEEEEEECC----------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC----CSSEEEESSSBGGGSCHH
T ss_pred EEEEECccc----------CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC----CceEEEECCEECCcCCHH
Confidence 467778642 246999999999999999999999999999999999764 279999999875321
Q ss_pred --cCeEEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHH
Q 045930 79 --YGGVAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLS 156 (661)
Q Consensus 79 --~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvs 156 (661)
....+|++|+.......++.+++.+...- +...++++++++.++|.+..++.++ .|||||||||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~ 135 (231)
T d1l7vc_ 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVR 135 (231)
T ss_dssp HHHHHEEEECSCCCCCSSCBHHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHH
T ss_pred HHHhhceeeeccccCCccccHHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcChh-----hcCHHHHHHHH
Confidence 23589999998776778999999875321 1234568899999999999988875 59999999999
Q ss_pred HHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEec
Q 045930 157 IALEILT-------RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFG 229 (661)
Q Consensus 157 Ia~aL~~-------~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G 229 (661)
||++|+. +|++|+|||||+|||+.++..+.+.|++++++|+|||+++||+ +++.++|||+++|++|++++.|
T Consensus 136 iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G 214 (231)
T d1l7vc_ 136 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASG 214 (231)
T ss_dssp HHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCS
T ss_pred HHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEC
Confidence 9999997 7799999999999999999999999999999999999999996 6899999999999999999999
Q ss_pred CCCCh
Q 045930 230 EAKSA 234 (661)
Q Consensus 230 ~~~~~ 234 (661)
+++++
T Consensus 215 ~~~ev 219 (231)
T d1l7vc_ 215 RREEV 219 (231)
T ss_dssp BHHHH
T ss_pred CHHHH
Confidence 87664
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.3e-43 Score=360.79 Aligned_cols=195 Identities=22% Similarity=0.346 Sum_probs=159.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHH
Q 045930 20 TRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRE 99 (661)
Q Consensus 20 ~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E 99 (661)
.++||+|||++|++||++||+||||||||||+++|+|++++. +|+|.++| +++|++|++.+++. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g--------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG--------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS--------CEEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC--------EEEEEeccccccCc-eeec
Confidence 367999999999999999999999999999999999999984 99999987 38999999988876 9999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHH---HHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 045930 100 TIAYSAHLRLPSNMNNEEITDVIEE---AITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSG 176 (661)
Q Consensus 100 ~l~~~~~l~~~~~~~~~~~~~~v~~---~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsG 176 (661)
|+.++.. ......++.++. ......+.+..++.++. ....|||||||||+|||||+.+|+||+|||||+|
T Consensus 116 ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred ccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 9987532 223222222221 11223455566666654 3357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecCCCChh
Q 045930 177 LDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAP 235 (661)
Q Consensus 177 LD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~~~~~~ 235 (661)
||+.+...+++.+.....+|+|+|+++|++ +..+.||||++|++|++++.|++++..
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~ 245 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQ 245 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999876544444689999999996 456789999999999999999987754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.4e-41 Score=332.73 Aligned_cols=196 Identities=22% Similarity=0.340 Sum_probs=165.5
Q ss_pred eEEEEEEEEEeecCCcccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCe
Q 045930 2 YLVWEEVTVVVPNFGSGPTRRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGG 81 (661)
Q Consensus 2 ~l~~~~l~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (661)
.|+++||++.+. ++||+|||+++++||+++|+||||||||||+++|+|+++| .+|+|.+||++....+..
T Consensus 2 ~lev~~ls~~y~-------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p---~~G~I~~~g~~i~~~~~~ 71 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITKVKGK 71 (200)
T ss_dssp EEEEEEEEEESS-------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGGGGG
T ss_pred eEEEEEEEEEeC-------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc---CCCEEEECCEehhHhcCc
Confidence 589999999773 4699999999999999999999999999999999999998 499999999997766678
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHH
Q 045930 82 VAYVTQENIMLGTLTVRETIAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEI 161 (661)
Q Consensus 82 i~yv~Q~~~l~~~lTV~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL 161 (661)
++|++|+..++..+|++|++.+.+.++.. ...+ +.+.+.++.+++.+.. ++++ +||||||||++||++|
T Consensus 72 i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~-~~~~-----~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 72 IFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLK-KKLG-----ELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTT-SBGG-----GSCHHHHHHHHHHHHT
T ss_pred EEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCcccc-cccC-----cCCCcHHHHHHHHHHH
Confidence 99999999999999999999998876522 2222 3466778888876543 4454 5999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 045930 162 LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLLSG 222 (661)
Q Consensus 162 ~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL~~ 222 (661)
+.+|+++||||||+|||+.++..+++.|+++.+++.++|+++|+.. ++||.+.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 9999999999999999999999999999999876445555555422 57999988853
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.57 E-value=9.4e-17 Score=151.51 Aligned_cols=155 Identities=12% Similarity=0.120 Sum_probs=99.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecC--C--CCCCCCCHHHHHHHHHhcCCCCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQE--N--IMLGTLTVRETIAYSAHLRLPSN 112 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~--~--~l~~~lTV~E~l~~~~~l~~~~~ 112 (661)
++|+||||||||||+++|+|.+++. .|.+...+.......++.++..+. + ......+..+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 67 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTS------------K 67 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCC------------S
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC---cceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhh------------h
Confidence 7999999999999999999998763 788887765432221222222111 0 0000000000 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 045930 113 MNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNI 192 (661)
Q Consensus 113 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~l 192 (661)
. ..++.--+.....+|+|+++|.++++++..+|+++++|||+.. ........+.|.++
T Consensus 68 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~ 125 (178)
T d1ye8a1 68 K--------------------LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQI 125 (178)
T ss_dssp S--------------------EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHH
T ss_pred h--------------------hhhhhhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHH
Confidence 0 0000000001124799999999999999999999999998543 33445566666666
Q ss_pred Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEecC
Q 045930 193 AH-DGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGE 230 (661)
Q Consensus 193 a~-~g~tvi~s~Hq~~~~i~~~~D~v~lL~~G~~v~~G~ 230 (661)
.+ .+.++|+++|+. ....++|++..+.+|+++.-++
T Consensus 126 l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 126 MHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred hccCCCEEEEEEccH--HHHHhhceEEEEeCCEEEEECC
Confidence 55 489999999995 4677899999999999876543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1.7e-09 Score=109.95 Aligned_cols=77 Identities=29% Similarity=0.295 Sum_probs=65.2
Q ss_pred ccccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 045930 144 WRGISGGEKKRLSIALEI----LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFL 219 (661)
Q Consensus 144 ~~~LSgGerqRvsIa~aL----~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~l 219 (661)
...+|+|||+...++..+ ..+|+++++|||-++||+.....+++.|++.++ +.-||+|||.| .+.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEE
Confidence 357999999998877764 345799999999999999999999999999975 57899999998 47789999976
Q ss_pred E--eCC
Q 045930 220 L--SGG 223 (661)
Q Consensus 220 L--~~G 223 (661)
+ .+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4 456
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=5.3e-09 Score=110.31 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=64.0
Q ss_pred cccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 045930 145 RGISGGEKKRLSIALEI----LTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDDLFLL 220 (661)
Q Consensus 145 ~~LSgGerqRvsIa~aL----~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~v~lL 220 (661)
+.+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|++||+| .+.+.+|+.+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 56899999998877544 356789999999999999999999999999876666799999997 689999998765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.23 E-value=3.8e-06 Score=81.49 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEecCCchHHHhh
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVV-KILKNIAHDGRTIISSIHQPSSEVFAL 213 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~-~~L~~la~~g~tvi~s~Hq~~~~i~~~ 213 (661)
.|-+|++-....+++..++++||+.+|=|+.....+. ..++.|.+.+..++++||.. ++.++
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 3444444444445667899999999999999888775 45677787788999999984 56554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=1.2e-05 Score=78.37 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhc-CCEEEEEecCC
Q 045930 150 GEKKRLSIALEILTRPQLLFLDEPTSGLDSAAAFFVVK-ILKNIAHD-GRTIISSIHQP 206 (661)
Q Consensus 150 GerqRvsIa~aL~~~P~lllLDEPtsGLD~~~~~~i~~-~L~~la~~-g~tvi~s~Hq~ 206 (661)
.|-+|++-...-+++..++++||+.+|=|+.....+.. .++.+..+ +..++++||..
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 33444444444455667999999999999999988865 47778665 56888898874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.68 E-value=0.00029 Score=69.23 Aligned_cols=34 Identities=32% Similarity=0.245 Sum_probs=28.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
-|+++.+=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4555554489999999999999999999887774
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00042 Score=67.76 Aligned_cols=154 Identities=22% Similarity=0.240 Sum_probs=78.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRET 100 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 100 (661)
..++.+ +.||+++.|.|++|+|||||+-.|+-.+.. |.-.+ +... .....+-|+.-++.. -.+.+-
T Consensus 20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~-----g~~~~-~~~~-~~~~~vl~~~~E~~~---~~~~~R 85 (274)
T d1nlfa_ 20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDLL-EVGE-LPTGPVIYLPAEDPP---TAIHHR 85 (274)
T ss_dssp CEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCTT-CCCC-CCCCCEEEEESSSCH---HHHHHH
T ss_pred HHHhCC----ccCCcEEEEEeCCCCCHHHHHHHHHHHHHc-----CCCcc-cccc-cCCCceEEEeccchH---HHHHHH
Confidence 346555 347999999999999999999777643211 10001 1111 112346666655421 012222
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-----
Q 045930 101 IAYSAHLRLPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALEILTRPQLLFLDEPTS----- 175 (661)
Q Consensus 101 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~aL~~~P~lllLDEPts----- 175 (661)
+. +.. ...+..+. ....+.+.+.+..+... ..-..+.+.-..+-..+|+++++|--++
T Consensus 86 l~--~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 86 LH--ALG---AHLSAEER----QAVADGLLIQPLIGSLP--------NIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp HH--HHH---TTSCHHHH----HHHHHHEEECCCTTSCC--------CTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSC
T ss_pred HH--HHh---hccChhhh----hcccccceeccccCccc--------hhHHHHHHHHHHHhccCccEEecCchhhhcccc
Confidence 11 100 11222221 12222222222222211 1111122222233457999999996542
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecC
Q 045930 176 GLDSAAAFFVVKILKNIAHD-GRTIISSIHQ 205 (661)
Q Consensus 176 GLD~~~~~~i~~~L~~la~~-g~tvi~s~Hq 205 (661)
--|......+++.|+.++++ |.+||++.|.
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 12666677888889888875 8888888775
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.16 E-value=0.0069 Score=56.58 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=37.2
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHH-HHHHHhcCCEEEEEecCCch--------HHHhhcCeEEEEe
Q 045930 164 RPQLLFLDEPTSGL----DSAAAFFVVKI-LKNIAHDGRTIISSIHQPSS--------EVFALFDDLFLLS 221 (661)
Q Consensus 164 ~P~lllLDEPtsGL----D~~~~~~i~~~-L~~la~~g~tvi~s~Hq~~~--------~i~~~~D~v~lL~ 221 (661)
+|+++++|--+.=. +.......+.. ++.+++.|.|++++.|.... .....+|.++.+.
T Consensus 125 ~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 125 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred ccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 79999999765432 33333334444 44444569999999987532 3445788888774
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=1.1e-05 Score=74.62 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=29.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+++.++.+.+| +++|+|||||||||+|++|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 356788888887 99999999999999999997543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=9.6e-05 Score=66.54 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+++|+|++|||||||++.|+..++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.00014 Score=70.02 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL 69 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~ 69 (661)
+|+.++++|+||+|||||+|.|.|...- .+|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh---hccCcc
Confidence 5899999999999999999999986542 256654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.06 E-value=0.00015 Score=65.65 Aligned_cols=27 Identities=44% Similarity=0.556 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.|++++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998753
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.04 E-value=0.00012 Score=67.72 Aligned_cols=26 Identities=38% Similarity=0.709 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
|.++.|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.03 E-value=0.0046 Score=58.69 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=82.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCCCCCHHHHHHHHHhcC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLGTLTVRETIAYSAHLR 108 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~l~ 108 (661)
+=+++|+++.|.||+|||||||..-++-.... .| ..+.|+.-+ .+..+.......+.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~----~~-------------~~~~~is~e------~~~~~~~~~~~~~~ 77 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACA----NK-------------ERAILFAYE------ESRAQLLRNAYSWG 77 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TT-------------CCEEEEESS------SCHHHHHHHHHTTS
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH----hc-------------cccceeecc------CCHHHHHHHHHHcC
Confidence 35899999999999999999998777643211 01 124444432 34555444443322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccccccCHHHHHHHHHHHH-HhhCCCEEEEeCCCC---CCCHHHHHH
Q 045930 109 LPSNMNNEEITDVIEEAITEMGLEDCADRLIGNWHWRGISGGEKKRLSIALE-ILTRPQLLFLDEPTS---GLDSAAAFF 184 (661)
Q Consensus 109 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSgGerqRvsIa~a-L~~~P~lllLDEPts---GLD~~~~~~ 184 (661)
....+ +...+.....+... ......+. .-.|..+ --.+|++++.|--+. +.+......
T Consensus 78 ----~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~ 139 (242)
T d1tf7a2 78 ----MDFEE--------MERQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQ 139 (242)
T ss_dssp ----CCHHH--------HHHTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHH
T ss_pred ----CChHH--------HhhcCceEEEEeec-----chhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHH
Confidence 11111 11122222221111 11222221 1112221 223699999997543 456666666
Q ss_pred HHHHHHHHHh-cCCEEEEEecCC---------chHHHhhcCeEEEEe
Q 045930 185 VVKILKNIAH-DGRTIISSIHQP---------SSEVFALFDDLFLLS 221 (661)
Q Consensus 185 i~~~L~~la~-~g~tvi~s~Hq~---------~~~i~~~~D~v~lL~ 221 (661)
.+..|.++++ .+.+++++.|.. ...+..++|-++.|.
T Consensus 140 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 140 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 6666666665 588988888742 123567899998885
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00025 Score=63.89 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999865
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.85 E-value=0.00017 Score=65.40 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|+|++|||||||++.|...++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999998887664
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.72 E-value=0.00036 Score=62.84 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++|.++.|+|++||||||+-+.|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999997653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.70 E-value=0.0013 Score=64.01 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+.+.||+|+|||+|.++|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.64 E-value=0.00017 Score=69.52 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEE
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVL 69 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~ 69 (661)
+|+.++++|+||+|||||+|.|.|...- .+|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHh---hhcccc
Confidence 5788999999999999999999986532 256554
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.61 E-value=0.00044 Score=62.42 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..++|.||+|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998653
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00051 Score=65.01 Aligned_cols=27 Identities=37% Similarity=0.569 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999987644
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0033 Score=61.38 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=22.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+++..-+.+.||+|+|||+|.++||..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 3344557899999999999999999754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.51 E-value=0.00043 Score=61.88 Aligned_cols=25 Identities=40% Similarity=0.701 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.++.|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.48 E-value=0.00069 Score=60.93 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++|-.++|.||+||||||+.+.|+-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3567889999999999999999997653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.47 E-value=0.00069 Score=59.71 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 045930 35 RILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG 56 (661)
+++.|.||+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.00052 Score=61.88 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+.|.||+|+|||||++.++..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999998764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.00066 Score=70.06 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=22.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~La 55 (661)
+.+.++.+++|+|||||||||+|++|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 334545699999999999999999995
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.43 E-value=0.00078 Score=60.43 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+++.|.|++||||||+.+.|+..+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998864
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.35 E-value=0.00075 Score=62.53 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 38999999999999999999863
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.30 E-value=0.00098 Score=60.22 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+.+++|.|++||||||+.+.|+-++.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999987653
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.28 E-value=0.0009 Score=59.90 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.005 Score=60.20 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+..-+.|-||+|+|||+|.++||+..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3445557899999999999999999875
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.17 E-value=0.0011 Score=60.77 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++||-||+|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.00076 Score=61.84 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 699999999999999999875
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.00088 Score=61.40 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|-++.|+|++||||||+-+.|+-++
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999765
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0013 Score=57.79 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999997653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.08 E-value=0.0012 Score=60.19 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||+|.|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.04 E-value=0.0014 Score=62.22 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.02 E-value=0.0015 Score=60.30 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+..+++|+||+||||||+.+.|+-.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.0016 Score=58.78 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.002 Score=59.17 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=26.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+=+.+|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999877754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0016 Score=60.12 Aligned_cols=23 Identities=48% Similarity=0.793 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0019 Score=58.46 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0019 Score=59.45 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+.|+||||+|||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0017 Score=60.30 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.0018 Score=59.12 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+||+|++|+|||||+|.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999853
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.0017 Score=56.98 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999854
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.83 E-value=0.0018 Score=56.97 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.81 E-value=0.0014 Score=59.77 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+||+|.+|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.80 E-value=0.0023 Score=58.21 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|.+|+|||||+|.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.80 E-value=0.0014 Score=59.05 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.76 E-value=0.12 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+..+++|.|..|.|||||.+.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999988653
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.0023 Score=59.36 Aligned_cols=22 Identities=50% Similarity=0.730 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+||||||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999998654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.71 E-value=0.0022 Score=56.83 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0028 Score=56.22 Aligned_cols=23 Identities=48% Similarity=0.736 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||+|.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.64 E-value=0.0028 Score=58.60 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.++.|+||+||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999765
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.62 E-value=0.0025 Score=58.91 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.55 E-value=0.0029 Score=56.85 Aligned_cols=22 Identities=55% Similarity=0.668 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.|+|++||||||+.+.||..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999765
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.003 Score=59.12 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=30.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIM 91 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l 91 (661)
++||-|++|||||||-+.|+-.+... + .......+..+++|+.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----~--------~~~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----E--------VDYRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----G--------SCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh----c--------cccCCCceEEEeccccc
Confidence 68999999999999999998765321 0 01112346778887764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0017 Score=58.76 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0037 Score=57.48 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67999999999999999999654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.41 E-value=0.0031 Score=57.96 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.34 E-value=0.0037 Score=56.64 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.34 E-value=0.0036 Score=55.90 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998854
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.34 E-value=0.0039 Score=56.34 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999998764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.32 E-value=0.0044 Score=56.82 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|=-+.|+||+||||||+-+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 35667789999999999999999954
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.31 E-value=0.004 Score=56.27 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.|+|++||||||+-+.||-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.27 E-value=0.0044 Score=56.52 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
++-+++.++|++||||||+.+.++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999988853
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.19 E-value=0.0041 Score=59.82 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
....+.+.||+|||||||.++|++.+.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999999764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.14 E-value=0.0044 Score=56.56 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+||+|...||||||+|.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.14 E-value=0.0014 Score=58.15 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||+|.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999999853
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.13 E-value=0.005 Score=56.79 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+++++|.+|||||||.+.|+..+
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.13 E-value=0.0047 Score=55.42 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+.++|++||||||+-+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999997653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.05 E-value=0.0048 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.05 E-value=0.0046 Score=57.47 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.03 E-value=0.04 Score=56.80 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 157 IALEILTRPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 157 Ia~aL~~~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
+..+|=.+|++++.+|.. |..++...+ +.|..|..|+.|.|-.+ .....+|
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~R 270 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTR 270 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhh
Confidence 445566799999999998 566554433 56778999999999853 3344444
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.01 E-value=0.0055 Score=57.34 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+++|.||+||||||+-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999997653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.99 E-value=0.005 Score=59.92 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999974
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.97 E-value=0.006 Score=55.56 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999754
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.007 Score=56.28 Aligned_cols=24 Identities=46% Similarity=0.789 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+++|.||+||||||+-+.|+..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999998753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.78 E-value=0.0042 Score=62.66 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
.|.-+.|.||.||||||||++|.+..++
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred hCCCEEEEeeccccchHHHHHHhhhccc
Confidence 3455899999999999999999998765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.77 E-value=0.0077 Score=56.64 Aligned_cols=27 Identities=37% Similarity=0.379 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|-++.+.|.||||||||.+.|+-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 688899999999999999999998654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.77 E-value=0.0069 Score=55.02 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.|+||+||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.73 E-value=0.0066 Score=54.21 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.0052 Score=62.07 Aligned_cols=27 Identities=41% Similarity=0.529 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...-.+||.||+|||||||++.|+..+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999998654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.0079 Score=56.49 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=24.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+=+++|+++.|.||+|||||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999999977764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.0066 Score=55.04 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.66 E-value=0.007 Score=55.45 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 045930 36 ILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG 56 (661)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.57 E-value=0.0069 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.-+++|-|+.||||||+++.|+..+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999999999987653
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.0085 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.45 E-value=0.0089 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+||+||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.0067 Score=57.32 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
++.+++|-|+-||||||+++.|+..+..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999999987753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.36 E-value=0.0079 Score=54.06 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.36 E-value=0.0086 Score=62.10 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+||+|.+|+|||||+|+|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.0095 Score=53.52 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999998764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.28 E-value=0.0095 Score=53.44 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.20 E-value=0.09 Score=51.04 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=26.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+=++.|.++-|-||+|||||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 67899999999999999999998777764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.0094 Score=53.24 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.11 E-value=0.012 Score=59.28 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...-.++|.||+|||||||++.|...+
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998643
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.10 E-value=0.012 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.10 E-value=0.014 Score=54.63 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+=+++|+++.|.|++|+|||||..-++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999999876664
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.012 Score=55.20 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.03 E-value=0.012 Score=55.88 Aligned_cols=22 Identities=45% Similarity=0.785 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++||+|...||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4899999999999999999874
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.01 E-value=0.014 Score=55.63 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
..+.|.||+|+||||+.++||....
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998643
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.00 E-value=0.015 Score=54.95 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=22.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHH
Q 045930 30 YAEPARILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 30 ~i~~Ge~~aI~GpsGsGKSTLL~~La 55 (661)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999976443
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.97 E-value=0.012 Score=52.38 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 045930 37 LAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG 56 (661)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998774
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.012 Score=53.04 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987663
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.014 Score=54.37 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+|.+++|=|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999997653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.89 E-value=0.013 Score=55.15 Aligned_cols=23 Identities=48% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+.|.||+|+|||||.++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999999754
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.013 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.016 Score=51.81 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|.+|+|||||++.+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.016 Score=52.62 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.71 E-value=0.015 Score=54.03 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 045930 36 ILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG 56 (661)
++||.|+.||||||+.+.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.013 Score=52.16 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|++|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.018 Score=51.78 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+-
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.65 E-value=0.019 Score=53.98 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
+|.+++|=|+.||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6999999999999999999999987653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.015 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999987753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.62 E-value=0.016 Score=54.85 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
-+.+.||+|+||||+.++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 367999999999999999997654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.018 Score=54.25 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+=+.+|+++.|.||+|||||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999999877763
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.54 E-value=0.019 Score=53.84 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.+++++||+|+||||.+-=||.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999986677554
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.018 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.015 Score=52.09 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999987653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.017 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998874
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.43 E-value=0.015 Score=57.88 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
|+.-+.+.||+|+|||+|.++||..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 34455789999999999999999864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.016 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.36 E-value=0.017 Score=54.67 Aligned_cols=22 Identities=45% Similarity=0.767 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+.||+|+|||||.+++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999854
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.34 E-value=0.018 Score=52.21 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 045930 37 LAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG 56 (661)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.019 Score=53.91 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+-||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.25 E-value=0.019 Score=50.81 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|+.|+|||||++.+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.25 E-value=0.042 Score=50.12 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=27.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
..++.....+ .|.=+.|.|+||+|||||.-.|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3466655555 7888999999999999999877643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.23 E-value=0.019 Score=57.23 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=32.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceeeEEEECCeecccccCeEEEEecCCCCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLSGNVVMTGNVLLNGKKRRLDYGGVAYVTQENIMLG 93 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~~~~~~~G~i~~~g~~~~~~~~~i~yv~Q~~~l~~ 93 (661)
++||-|++||||||+-+.|..++... .....+..+++|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~---------------~~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW---------------PEHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS---------------TTCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh---------------cCCCceEEEeeeeeECC
Confidence 89999999999999999998766421 00134778888887765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.019 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.16 E-value=0.013 Score=53.13 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 045930 37 LAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG 56 (661)
++++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999998865
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.018 Score=51.01 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|.+|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.13 E-value=0.012 Score=58.19 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++||-|+|||||||+.+.|....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 89999999999999999998754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.023 Score=52.89 Aligned_cols=21 Identities=52% Similarity=0.724 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 045930 36 ILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG 56 (661)
++||.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999974
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.023 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998864
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.021 Score=51.51 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.99 E-value=0.022 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|.+|+|||||++.+.+-
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.93 E-value=0.021 Score=54.91 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.-+.+.||+|+|||+|.++||...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 347899999999999999999753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.87 E-value=0.021 Score=52.43 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.84 E-value=0.028 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
..+.|.||+|+||||+++.|+..+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 47889999999999999999987643
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.025 Score=50.38 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 045930 37 LAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG 56 (661)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.022 Score=51.21 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.70 E-value=0.017 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-+.++|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999998754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.023 Score=50.87 Aligned_cols=20 Identities=40% Similarity=0.695 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 045930 37 LAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG 56 (661)
++++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.62 E-value=0.034 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...+++++||+|+||||.+-=||.++
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999988787654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.52 E-value=0.018 Score=51.70 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.028 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.029 Score=50.03 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998864
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.029 Score=49.99 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999977653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.027 Score=50.54 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|.+|+|||||++.+.+-
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.31 E-value=0.026 Score=53.17 Aligned_cols=27 Identities=37% Similarity=0.591 Sum_probs=21.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++..+++++||+|+||||.+-=||-++
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455689999999999999987777554
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.26 E-value=0.035 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.767 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
+++|-|.-||||||+++.|+..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.02 Score=51.39 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|++|+|||||++.+++-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.18 E-value=0.042 Score=49.15 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=25.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+||.++++-|+=|||||||.+.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4799999999999999999999998654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.032 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|.+|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988853
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.15 E-value=0.061 Score=48.96 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=26.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
..|+..-. .-.|.=++|.|+||+|||||.-.|..+
T Consensus 3 ~~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 3 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ceEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 34554444 446778999999999999998777654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.08 E-value=0.035 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+.+-||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.034 Score=49.56 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 045930 37 LAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG 56 (661)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.04 E-value=0.035 Score=49.61 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++++|.+|+|||||++.+.+-
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 578999999999999987763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.97 E-value=0.035 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 045930 36 ILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG 56 (661)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.87 E-value=0.038 Score=51.88 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=17.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...+++++||+|+||||.+-=||-++
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999987777543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.83 E-value=0.04 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.033 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 34 ARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 34 Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-.+++++||+|+||||.+-=||-++
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999987777654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.039 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-++++|++|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977664
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.035 Score=54.35 Aligned_cols=34 Identities=35% Similarity=0.660 Sum_probs=27.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 22 RLLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 22 ~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.+|+.++- |=-+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHcCCC---CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 35666644 33489999999999999999999965
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.56 E-value=0.042 Score=49.87 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 045930 37 LAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~La 55 (661)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999984
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.51 E-value=0.042 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
=+.+.||+|+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 36889999999999999999864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.50 E-value=0.047 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++||-|+.|||||||-+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 88999999999999998886543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.46 E-value=0.041 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 045930 37 LAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+||+|-+-+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999853
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.43 E-value=0.032 Score=53.19 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45567999999999999999765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.43 E-value=0.044 Score=51.12 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 165 PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 165 P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
.+++++||. ..+.......+.+.|.+..+ ...++++++++.
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence 469999996 46777777777777765533 344555565543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.33 E-value=0.043 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.692 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|.-+||||||+|+|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.045 Score=49.58 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|.+|+|||||++.+..-
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 799999999999999887753
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.047 Score=48.45 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.26 E-value=0.04 Score=52.05 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=28.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 045930 164 RPQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPS 207 (661)
Q Consensus 164 ~P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~ 207 (661)
+.+++++||.-. |.......+.+.+.+-. ....+|++++++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 567999999864 77777666666655432 2345788888874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.13 E-value=0.044 Score=53.64 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
.++|+|.-.||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.00 E-value=0.085 Score=47.62 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=26.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 23 LLNGLTGYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 23 iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-|+. ++-.-.|.=+.|.|+||+|||||.-.+..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4555 344567888999999999999998766644
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.97 E-value=0.051 Score=53.36 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=26.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+.+-.|+-.+|+|++|+|||||+..|+.-
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.82 E-value=0.046 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
-+||+|-+.+|||||+|+|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.05 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++|+|++|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.66 E-value=0.031 Score=55.84 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLSG 60 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~~ 60 (661)
.-+.|.||.|+|||||++.+++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999998864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.54 E-value=0.059 Score=50.50 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 045930 36 ILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~La 55 (661)
-+.|+|++|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999874
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.45 E-value=0.081 Score=51.26 Aligned_cols=29 Identities=34% Similarity=0.490 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+=+++|.++-|.||+|||||||.-.++.-
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 67999999999999999999998666643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.29 E-value=0.063 Score=48.40 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 045930 37 LAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG 56 (661)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986665
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.76 E-value=0.06 Score=56.23 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
=+.++||+|+|||-|.+.||+.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999999763
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=0.095 Score=52.01 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
|...+.++||+|+|||.|.+.||-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44478899999999999999999754
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.19 E-value=0.1 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 045930 35 RILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG 56 (661)
.++||.|+-||||||..+.|+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999975
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.19 E-value=0.086 Score=48.90 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 045930 37 LAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG 56 (661)
+||+|..+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.16 E-value=0.1 Score=50.89 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 045930 36 ILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~La 55 (661)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999983
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.95 E-value=0.087 Score=47.37 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+.++|.+|+|||||++.+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.89 E-value=0.09 Score=51.06 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+||+|-+-+|||||+++|++-.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999753
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.52 E-value=0.13 Score=47.37 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 33 PARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 33 ~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
|.=-+||+|.-.+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333489999999999999999998653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.40 E-value=0.11 Score=46.46 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+.++|..|+|||||++-+..-
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 689999999999999987643
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.01 E-value=0.12 Score=50.04 Aligned_cols=20 Identities=50% Similarity=0.780 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 045930 36 ILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~La 55 (661)
-+||+|+.|||||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999994
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.13 Score=48.07 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 35 RILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
.+++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.61 E-value=0.11 Score=52.54 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=25.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 045930 31 AEPARILAVMGPSGSGKSTLLDALAGRLS 59 (661)
Q Consensus 31 i~~Ge~~aI~GpsGsGKSTLL~~LaG~~~ 59 (661)
++++..+.+.||+|+||||+.++|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36778999999999999999999998754
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.49 E-value=0.11 Score=48.73 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~ 57 (661)
++.|-|.=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999988764
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.90 E-value=0.15 Score=47.45 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=38.4
Q ss_pred hhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHH
Q 045930 162 LTRPQLLFLDEPTSG-LDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEV 210 (661)
Q Consensus 162 ~~~P~lllLDEPtsG-LD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i 210 (661)
+.+.++|++|+--.= =+......+..++..+.+.|+.+|+++..+..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhc
Confidence 557899999987432 2467788899999998888999999998876543
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.82 E-value=0.16 Score=50.45 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=23.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
...++| ++.+.||+|+|||.|.++|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 445555 66778999999999999999864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.61 E-value=0.17 Score=49.05 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+=++.|.++-|.||+|+|||||.-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 5689999999999999999999655553
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.29 E-value=0.21 Score=48.47 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 045930 29 GYAEPARILAVMGPSGSGKSTLLDALAG 56 (661)
Q Consensus 29 ~~i~~Ge~~aI~GpsGsGKSTLL~~LaG 56 (661)
+.+-+||-.+|.|++|+|||||+.-++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 4688999999999999999999877764
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=0.2 Score=51.21 Aligned_cols=21 Identities=57% Similarity=0.779 Sum_probs=17.8
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 045930 35 RILAVMGPSGSGKSTLLDALA 55 (661)
Q Consensus 35 e~~aI~GpsGsGKSTLL~~La 55 (661)
+.+.|+|++|||||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 458999999999999997554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.25 E-value=0.25 Score=47.78 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-..|+||+|.|||+++.-++.++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999875
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.44 E-value=0.3 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-..|+||+|.|||++..-|+.++
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 46899999999999999999875
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.34 E-value=0.29 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 045930 36 ILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 36 ~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
-+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 47889999999999999999854
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.49 E-value=0.32 Score=45.65 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=32.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 045930 165 PQLLFLDEPTSGLDSAAAFFVVKILKNIAHDGRTIISSIHQPSSEVFALFDD 216 (661)
Q Consensus 165 P~lllLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~s~Hq~~~~i~~~~D~ 216 (661)
.+++++||.= .|+..++..+.+.+.+-. .+..+|++++++...+..+-.|
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i~~~i~SR 165 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSR 165 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGSCHHHHTT
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCccccChhHhhh
Confidence 4699999985 477777766666665322 2467788888865433344333
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.90 E-value=0.35 Score=47.70 Aligned_cols=27 Identities=37% Similarity=0.682 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 045930 32 EPARILAVMGPSGSGKSTLLDALAGRL 58 (661)
Q Consensus 32 ~~Ge~~aI~GpsGsGKSTLL~~LaG~~ 58 (661)
+|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHHHHh
Confidence 344467899999999999999999865
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| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.86 E-value=0.42 Score=43.76 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 045930 37 LAVMGPSGSGKSTLLDALAGR 57 (661)
Q Consensus 37 ~aI~GpsGsGKSTLL~~LaG~ 57 (661)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
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| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=80.77 E-value=0.33 Score=46.57 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=15.6
Q ss_pred EEEEECCCCCcHHHH-HHHHHc
Q 045930 36 ILAVMGPSGSGKSTL-LDALAG 56 (661)
Q Consensus 36 ~~aI~GpsGsGKSTL-L~~LaG 56 (661)
-+.|.|+.||||||. +..++-
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ 37 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAH 37 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHH
Confidence 367999999999975 454443
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| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.36 E-value=0.3 Score=47.41 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=18.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH
Q 045930 21 RRLLNGLTGYAEPARILAVMGPSGSGKSTLL 51 (661)
Q Consensus 21 ~~iL~~vs~~i~~Ge~~aI~GpsGsGKSTLL 51 (661)
+.|+++. .|- +.|.|+.||||||.|
T Consensus 17 ~~~v~~~-----~g~-~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EGP-LLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SSC-EEEEECTTSCHHHHH
T ss_pred HHHHhCC-----CCC-EEEEecCCccHHHHH
Confidence 4566653 344 678999999999755
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