Citrus Sinensis ID: 045938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-
Protein Sequence
MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVFDY
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccccHHccccccccEEEEEEEccccccccccccccccccEEEEEcccccEEEcccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEccccccccccccccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccccEEEEcccccccccccccHHHHcccccccEEEEccccccccccHHHHHHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEccccEEEccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHcccccccccccEEEEEcccccccHHccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEcccHHHHHHHcccccccccccccccEEEEccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccEEccHHHcccccccccHHHcEEEEccHHHHHHHccccccccccccccccEEEEcccHHHHHccHHHcHHHHHcccccccHHcccccccccccEEEEEcccccEccccccccccccEEEEEccccccccccccccccHHccEEEEcccccHHccHHHHHccccccccccEEEcccccHHHccccccccccccccccccccccEEEEcccccHccccccccccccccEEEEcccccccccccccccccccEEEEcccccHccccHHHcccccccccEEEEccccccccccccccccHHHHHHHHHHHcHccccccccccHHHHHcEccccccHcccccHccccccHHHcccccccccccEEEEccccccccccccccccccccEEEEcccccHccccccccccccccEEEEccccccccccccccccccccEEEEcccHHHHcccccccccccccEEEEcccccHccccccccccccccEEEEcccccccccccccEEEccccHHHHEccccccccccccccccccccEEEEcccccHHHccHHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHccccccccccccccccEEEEccccEEcc
Coil and Loop (DISEMBL)
mlephknleqfcisgyggakfptwfgdssflKLVTLKFeycgmcptlpsvgqlpslkhlaVCGMTSvkrlgsefygndtpipfpcletlhfedmqgwedwiphgfsqgverfpklRELHILRCSklkgtfpehlpALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWEsatghlgsqnsvvcrdtsnqvflagplkpripkleeleindMKEQTYIWKSHNELLQDICSlkrltitscpklqsLVAEEEKDQQQQLCQLSCILEYidlrdcqdlvklpqsplslsslrEIEIYGcsslvsfpevalpsklkkIEIRECDalkslpeawmcdtnsslEILEIWICNSLtyiagvqlppslkwtLTVEEGIQSSSSSRRYTSSLleglhisrcpsltcifsknelpatleslevgnlppslksldvwSCSELESIAERldnntsletisisecenlkilpsGLHNLRQLQEIgiwecenlvsfpqgglpcakltrLEISYCKRlqvlpkglhnltslqqltigeggelpsleeddglptnlhrleiidnkkiwkfSSLRQltisgcdddmvsfppedirlrttlplpACLASlmignfpnlerlsssivdlqnlthleledcpklkyfpekglpssLLQLYIGGCPLIAEKCRKDGGQYWDLLthipkvkidfKWVFDY
Flexible Loop (DISEMBL)
MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVflagplkpripklEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEgiqsssssrrYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLthipkvkiDFKWVFDY
Low Complexity Region (SEG)
MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEEllvsvsslpslCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDqqqqlcqlscILEYIDLRDCQDLVKlpqsplslsslREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQsssssrrytssLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVFDY
Disordered region (IsUnstruct)
*******LEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVA*******QQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEE************SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE************LPTNLHRLEIIDNKKIWKFSS********************IRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVF**
Disordered Region (DISOPRED)
MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVW********SQNSVVCRDTSNQVFLAG*LKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEA****TNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEE*************SLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVFDY
Disordered Region (DISEMBL)
MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLV*********QLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVE**************SLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVFDY
Disordered Region (DISPRO)
*LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVFDY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVFDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	681	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.898	0.429	0.287	8e-52
Q9LRR4	1054	Putative disease resistan	no	no	0.209	0.135	0.393	1e-26
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.503	0.263	0.274	3e-15
Q7XA39	988	Putative disease resistan	N/A	no	0.372	0.257	0.271	6e-11
Q7XA42	979	Putative disease resistan	N/A	no	0.342	0.237	0.234	2e-10
Q7XA40	992	Putative disease resistan	N/A	no	0.348	0.238	0.241	5e-08
Q9LVT1	623	Putative disease resistan	no	no	0.148	0.162	0.280	8e-08
Q9FKZ0	815	Probable disease resistan	no	no	0.176	0.147	0.295	1e-07
Q9FKZ1	809	Probable disease resistan	no	no	0.224	0.189	0.283	2e-07
Q7XBQ9	970	Disease resistance protei	N/A	no	0.368	0.258	0.275	2e-07

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  205 bits (522), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 209/728 (28%), Positives = 327/728 (44%), Gaps = 116/728 (15%)

Query: 1    MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            MLEPH +L+ FCI  Y G  FP W GDSSF  + ++    C +C +LP VGQLPSLK+L+
Sbjct: 754  MLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLS 813

Query: 61   VCGMTSVKRLGSEFY---GNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRE 117
            +     ++++G +F+    N   +PF  L+ L F  M  W++WI      G+  FP L++
Sbjct: 814  IEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQK 871

Query: 118  LHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSV----------------SSLPSLCKF 161
            L I RC  L+  FPE LP+   + I  C    VS                 +S+PS+ + 
Sbjct: 872  LIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVSGGENSFRRSLTNIPESPASIPSMSRR 931

Query: 162  II----GGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIND---- 213
             +    G  K     SA     S +S    D       +    P+  + E+ +  +    
Sbjct: 932  ELSSPTGNPKSDASTSAQPGFAS-SSQSNDDNEVTSTSSLSSLPKDRQTEDFDQYETQLG 990

Query: 214  -----MKEQTYIWKSHNELLQDICS-----LKRLTITSCPKLQ-SLVAEEEKDQQQQLCQ 262
                  +E   I   ++  + DI S     + R ++   PK + S++      Q  Q   
Sbjct: 991  SLPQQFEEPAVISARYSGYISDIPSTLSPYMSRTSLVPDPKNEGSILPGSSSYQYHQY-- 1048

Query: 263  LSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIREC 322
               I   +      + +K  Q     + +  +++   S L+  P+      L+ + I  C
Sbjct: 1049 --GIKSSVPSPRSSEAIKPSQYDDDETDMEYLKVTDISHLMELPQ-----NLQSLHIDSC 1101

Query: 323  DALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRY 382
            D L SLPE  + ++  +L  L I  C+SL    G   P +LK                  
Sbjct: 1102 DGLTSLPEN-LTESYPNLHELLIIACHSLESFPGSHPPTTLK------------------ 1142

Query: 383  TSSLLEGLHISRCPSLTCIFSKNELP----ATLESLEVGNLPPSLKSLDVWSCSELESIA 438
                   L+I  C  L   F+++  P    + LE L +G+           SCS L +  
Sbjct: 1143 ------TLYIRDCKKLN--FTESLQPTRSYSQLEYLFIGS-----------SCSNLVNFP 1183

Query: 439  ERLDNNTSLETISISECENLKILP--SGLHNLR-QLQEIGIWECENLVSFPQGGLPCAKL 495
              L     L ++SI +CE+ K     +GL + R  L+ + I +C NL +FPQGGLP  KL
Sbjct: 1184 --LSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKL 1241

Query: 496  TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKI- 554
            + + +S CK+LQ LP+ L  LTSL  L I +  E+ ++    G P+NL  L I    K+ 
Sbjct: 1242 SSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETI-PGGGFPSNLRTLCISLCDKLT 1300

Query: 555  ----W---KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLS 607
                W      +LR L I G ++D+ SFP E +       LP  + SL I  F NL+ L+
Sbjct: 1301 PRIEWGLRDLENLRNLEIDGGNEDIESFPEEGL-------LPKSVFSLRISRFENLKTLN 1353

Query: 608  -SSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLT 666
                 D + +  +E+  C KL+   ++ LP  L  L I  C L+ E   +   +++ +L 
Sbjct: 1354 RKGFHDTKAIETMEISGCDKLQISIDEDLP-PLSCLRISSCSLLTETFAEVETEFFKVL- 1411

Query: 667  HIPKVKID 674
            +IP V+ID
Sbjct: 1412 NIPYVEID 1419

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  122 bits (305), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 7/150 (4%)

Query: 2   LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
           L PH+++E+  I  Y G +FP W  D SF ++V ++   C  C +LPS+GQLP LK L +
Sbjct: 761 LRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHI 820

Query: 62  CGMTSVKRLGSEFYGN------DTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKL 115
            GM  ++ +G +FY +          PF  LETL F+++  W++W+    ++G + FP L
Sbjct: 821 SGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSL 879

Query: 116 RELHILRCSKLKGTFPEHLPALEMLVIEGC 145
           ++L ILRC +L GT P  LP+L  L I  C
Sbjct: 880 KKLFILRCPELTGTLPTFLPSLISLHIYKC 909

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 190/434 (43%), Gaps = 91/434 (20%)

Query: 267  LEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDAL 325
            L+ ++LR   +L ++P   L+++ L E+++ GC SLV+ P  +   +KL  +++ +C  L
Sbjct: 615  LKEMNLRYSNNLKEIPDLSLAIN-LEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKL 673

Query: 326  KSLPEAWMCDTN-SSLEILEIWICNSLTYIAGVQLP------PSLKWTLTVEEGIQSSSS 378
            +S P     D N  SLE L +  C +L     +++       P  +  + VE+       
Sbjct: 674  ESFP----TDLNLESLEYLNLTGCPNLRNFPAIKMGCSDVDFPEGRNEIVVED------- 722

Query: 379  SRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNL-------PPSLKSLDVWSC 431
                                 C ++KN LPA L+ L+           P  L  L+V   
Sbjct: 723  ---------------------CFWNKN-LPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGY 760

Query: 432  SELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLP 491
               E + E + +  SLE + +SE ENL  +P  L    +L+ + +  C++LV+ P     
Sbjct: 761  KH-EKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLVTLPSTIGN 818

Query: 492  CAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS-----------------LE 534
              +L RLE+  C  L+VLP  + NL+SL+ L +     L S                 +E
Sbjct: 819  LHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIE 877

Query: 535  EDDGLPTNLHRLEIIDNKKIW---------KFSSLRQLTISGCDDDMVSFP--PEDIR-- 581
            E      NLHRL  ++ KK             SSL  L +SGC   + SFP   E I+  
Sbjct: 878  EIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSS-LRSFPLISESIKWL 936

Query: 582  -LRTT-------LPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK 633
             L  T       L     L +L + N  +L  L ++I +LQ L   E+++C  L+  P  
Sbjct: 937  YLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPID 996

Query: 634  GLPSSLLQLYIGGC 647
               SSL+ L + GC
Sbjct: 997  VNLSSLMILDLSGC 1010

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 133/306 (43%), Gaps = 52/306 (16%)

Query: 2   LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
           L+PH NL+   I  +GG +FP+W   S   K+++++ + C  C  LP  G+LP L++L +
Sbjct: 700 LKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLEL 759

Query: 62  -CGMTSVKRLGSEFYGN--DTPIPFPCLETLH---FEDMQGWEDWIPHGFSQGVERFPKL 115
             G   V+ +  +   +   T   FP L+ L    F  ++G          +G E+FP L
Sbjct: 760 QNGSAEVEYVEEDDVHSRFSTRRSFPSLKKLRIWFFRSLKGLMK------EEGEEKFPML 813

Query: 116 RELHILRCSKLKGTFPEHLPALEMLVIEGCEEL--LVSVSSLPSLCKFIIGGCKKIVWES 173
            E+ IL C      FP  L +++ L + G      L S+S+L +L    IG         
Sbjct: 814 EEMAILYCPLF--VFPT-LSSVKKLEVHGNTNTRGLSSISNLSTLTSLRIGAN------- 863

Query: 174 ATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICS 233
                        R TS    L   +   +  LE L   D K    +  S    L  + +
Sbjct: 864 ------------YRATS----LPEEMFTSLTNLEFLSFFDFKNLKDLPTS----LTSLNA 903

Query: 234 LKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLRE 293
           LKRL I SC  L+S         +Q L  L+ + +   ++ C+ L  LP+    L++L  
Sbjct: 904 LKRLQIESCDSLESF-------PEQGLEGLTSLTQLF-VKYCKMLKCLPEGLQHLTALTN 955

Query: 294 IEIYGC 299
           + + GC
Sbjct: 956 LGVSGC 961

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 128/337 (37%), Gaps = 104/337 (30%)

Query: 2   LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
           L+PH NL+   I+G+GG + P W   S    +V+++   C  C  LP  G+L        
Sbjct: 697 LKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGEL-------- 748

Query: 62  CGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHIL 121
                                 PCLE+L         +++      G  RFP LR+L I 
Sbjct: 749 ----------------------PCLESLELHTGSADVEYVEDNVHPG--RFPSLRKLVIW 784

Query: 122 RCSKLKGTFP----EHLPALEMLVIEGCEELLV-SVSSLPSLCKFIIGGCKKIVWESATG 176
             S LKG       +  P LE +    C   ++ ++SS+ +L         K++   AT 
Sbjct: 785 DFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKTL---------KVIVTDAT- 834

Query: 177 HLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKR 236
                   V R  SN           +  L  L+I+D  E T +     E+ + + +LK 
Sbjct: 835 --------VLRSISN-----------LRALTSLDISDNVEATSL---PEEMFKSLANLK- 871

Query: 237 LTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEI 296
                                           Y+ +   ++L +LP S  SL++L+ ++ 
Sbjct: 872 --------------------------------YLKISFFRNLKELPTSLASLNALKSLKF 899

Query: 297 YGCSSLVSFPEVALP--SKLKKIEIRECDALKSLPEA 331
             C +L S PE  +   + L ++ +  C  LK LPE 
Sbjct: 900 EFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEG 936

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 122/336 (36%), Gaps = 99/336 (29%)

Query: 2   LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
           L+PH NL+   I  + G   P W   S    +V++    C  C  LP  G+L        
Sbjct: 707 LKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGEL-------- 758

Query: 62  CGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHIL 121
                                 PCLE+L  +D     +++         RFP LR+LHI 
Sbjct: 759 ----------------------PCLESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIG 796

Query: 122 RCSKLKG----TFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGH 177
               LKG       E  P LE + I  C   +    +L S+ K  I G      E+  G 
Sbjct: 797 GFCNLKGLQRMKGAEQFPVLEEMKISDCP--MFVFPTLSSVKKLEIWG------EADAGG 848

Query: 178 LGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRL 237
           L S                                               + ++ +L  L
Sbjct: 849 LSS-----------------------------------------------ISNLSTLTSL 861

Query: 238 TITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIY 297
            I S   + SL+ E  K+ +         L Y+ +   ++L +LP S  SL++L+ ++I 
Sbjct: 862 KIFSNHTVTSLLEEMFKNLEN--------LIYLSVSFLENLKELPTSLASLNNLKCLDIR 913

Query: 298 GCSSLVSFPEVALP--SKLKKIEIRECDALKSLPEA 331
            C +L S PE  L   S L ++ +  C+ LK LPE 
Sbjct: 914 YCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEG 949

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 62/114 (54%)

Query: 413 SLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQ 472
           ++++  + P L  + +  C +L  +   +   TSL +ISI+ C N+K LP  +  L+ LQ
Sbjct: 455 AIDIAQIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQ 514

Query: 473 EIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE 526
            + ++ C  L S P       +L  ++IS+C  L  LP+ + N+ +L+++ + E
Sbjct: 515 LLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDMRE 568

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 412 ESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQL 471
           E ++V     +L+ +D+  C +L+ +   +    SL+T+SI+ C  L  LP  + NL +L
Sbjct: 646 EDIDVSKALSNLQEIDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRL 705

Query: 472 QEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE--GGE 529
           + + +  C NL   P+     + L  L+IS+C  L+ LP+ +  L  L+ +++ +  G E
Sbjct: 706 EVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKCSGCE 765

Query: 530 LP 531
           LP
Sbjct: 766 LP 767

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 390 LHISRCPSLTCIF-SKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLE 448
           L +S    L+ +  S  E+    E + V N    L+ +D+  C +L+ +   +    SL+
Sbjct: 617 LQLSSLKKLSLVMCSFGEVFYDTEDIVVSNALSKLQEIDIDYCYDLDELPYWISEIVSLK 676

Query: 449 TISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQV 508
           T+SI+ C  L  LP  + NL +L+ + +    NL   P+     + L  L+IS+C  L+ 
Sbjct: 677 TLSITNCNKLSQLPEAIGNLSRLEVLRLCSSMNLSELPEATEGLSNLRFLDISHCLGLRK 736

Query: 509 LPKGLHNLTSLQQLTIGE--GGELPSLEEDDGLPTNLHRLEI 548
           LP+ +  L +L+++++ +  G ELP         TNL  LE+
Sbjct: 737 LPQEIGKLQNLKKISMRKCSGCELPE------SVTNLENLEV 772

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 128/301 (42%), Gaps = 50/301 (16%)

Query: 279 VKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKI------EIRECDALKSLPEAW 332
           VK+ ++    S+L  ++IYG    +  PE    S LK I        R C  L    +  
Sbjct: 695 VKVLEALKPHSNLTSLKIYGFRG-IHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDL- 752

Query: 333 MCDTNSSLEILEI-WICNSLTYIAGVQLP-----------PSLK----WTLTVEEGIQSS 376
                  LE LE+ W    + Y+  V +            PSL+    W     +G+   
Sbjct: 753 -----PCLESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKK 807

Query: 377 SSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELES 436
               ++   +LE + I  CP LT       L + L +L          SL +       S
Sbjct: 808 EGEEQF--PVLEEMIIHECPFLT-------LSSNLRAL---------TSLRICYNKVATS 849

Query: 437 IAERLDNN-TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLP-CAK 494
             E +  N  +L+ ++IS C NLK LP+ L +L  L+ + I  C  L S P+ GL   + 
Sbjct: 850 FPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSS 909

Query: 495 LTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKI 554
           LT L + +C  L+ LP+GL +LT+L  L I    +L    E  G+  + H++  I N  I
Sbjct: 910 LTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCE-KGIGEDWHKISHIPNVNI 968

Query: 555 W 555
           +
Sbjct: 969 Y 969

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	681
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.922	0.441	0.388	1e-103
356554923	1399	PREDICTED: putative disease resistance R	0.898	0.437	0.365	1e-102
45826061	739	resistance protein [Quercus suber]	0.904	0.833	0.382	4e-99
400131587	1388	FB_MR5 [Malus x robusta]	0.900	0.441	0.372	8e-95
225449649	1418	PREDICTED: putative disease resistance p	0.926	0.444	0.372	4e-89
296085123	1278	unnamed protein product [Vitis vinifera]	0.894	0.476	0.338	6e-86
359487253	1390	PREDICTED: putative disease resistance p	0.900	0.441	0.334	5e-84
224059584	1418	cc-nbs-lrr resistance protein [Populus t	0.913	0.438	0.362	4e-83
359487255	1336	PREDICTED: putative disease resistance p	0.810	0.413	0.363	1e-80
147766392	1471	hypothetical protein VITISV_007674 [Viti	0.876	0.405	0.348	1e-80

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 275/707 (38%), Positives = 370/707 (52%), Gaps = 79/707 (11%)

Query: 1    MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            ML+P+  L++  +  YGG KFPTW GD SF  LV L+FE C  C +LP VGQLP LK L 
Sbjct: 757  MLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLL 816

Query: 61   VCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHI 120
            + GM  VK +G EFYG     PF  LETLHFEDM  W +WIP G +   E F  L +L I
Sbjct: 817  IKGMAGVKSVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPLGVN---EAFACLHKLSI 873

Query: 121  LRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGS 180
            +RC  L    P+HLP+L+ LVI GC  ++VSVS+LP LC  +I GCK++  ES+ G  GS
Sbjct: 874  IRCHNLVRKLPDHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESSVG-FGS 932

Query: 181  QNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIT 240
              S+     S        L   + K+E L+I D ++ T +W+   E L  +  L+ L+I 
Sbjct: 933  PYSMAFSKISEFGNATAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIE 992

Query: 241  SCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCS 300
             CP                                  LV  P S    S L+ I+I  CS
Sbjct: 993  DCPT---------------------------------LVSFPASGFP-SMLKVIQIKSCS 1018

Query: 301  SLVS-FPEVALPSK----LKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIA 355
             L S  PE  L S+    L+++ +  CD++KS+    +  T   L+ LEI  C +L  + 
Sbjct: 1019 GLKSLLPEGTLHSRENACLERLCVVRCDSMKSIARGQLPTT---LKKLEISHCMNLQCVL 1075

Query: 356  GVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESL- 414
                  S    +  +E I + S +       L+ L I  CPSLT + S  +LPATL  L 
Sbjct: 1076 DEGEGSSSSSGMH-DEDINNRSKTH------LQYLDIKSCPSLTTLTSSGKLPATLTHLL 1128

Query: 415  -----------EVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPS 463
                         G LP +L+ L++ S S+L+ IAERL  NTSLE I I  C  LK LP 
Sbjct: 1129 LRECPKLMCLSSTGKLPAALQYLEIQSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPE 1188

Query: 464  GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLT 523
             LHNL +L++  I+ C++  SFP  GLP + L  L I  CK L+ LP G+ NLTSLQ+L 
Sbjct: 1189 DLHNLSKLRQFLIFWCQSFSSFPAAGLP-SNLRVLGIKNCKNLKALPNGMRNLTSLQKLD 1247

Query: 524  IGEG-GELPSLEEDDGLPTNLHRLEIIDNKKI-----WKF---SSLRQLTISGCDDDMVS 574
            I      LPS +E  GLPTNL  L + D K       W     +SL +L+I G   D+ S
Sbjct: 1248 ISHRLDSLPSPQE--GLPTNLIELNMHDLKFYKPMFEWGLQQPTSLIKLSIHGECLDVDS 1305

Query: 575  FPPEDIRLRTTLPLPACLASLMIGNFPNLERLS-SSIVDLQNLTHLELEDCPKLKYFPEK 633
            +P E       + LP  L+ L I  F NLE LS     +L +L  L++ +C KL   P++
Sbjct: 1306 YPGEREN-GVMMLLPNSLSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKE 1364

Query: 634  GLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVFD 680
            GLP SL QL I  CPL+++ C  + GQ W  + HIP V ID K++ +
Sbjct: 1365 GLPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAHIPCVLIDNKFIHE 1411

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 258/705 (36%), Positives = 372/705 (52%), Gaps = 93/705 (13%)

Query: 1    MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            ML+PHKNL +  I  YGG  FP W GD S+  LV LK + C  C +LP++G L +LK L 
Sbjct: 758  MLQPHKNLAKLTIKCYGGTSFPKWIGDPSYKSLVFLKLKDCAHCTSLPALGNLHALKELY 817

Query: 61   VCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHI 120
            + GM  V  +  EF GN    PFP LE L+F DM+ WE+W     ++  + F  L++L I
Sbjct: 818  IIGMKEVCCIDGEFCGNACLRPFPSLERLYFMDMEKWENWFLSDNNEQNDMFSSLQQLFI 877

Query: 121  LRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGS 180
            ++C KL G  PE+LP+L+ ++++ CE+LLV++SSLP L K  I GCK +V   A      
Sbjct: 878  VKCPKLLGKLPENLPSLKHVIVKECEQLLVTISSLPVLYKLEIEGCKGLVLNCAN----- 932

Query: 181  QNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIT 240
                                     L  + ++ + E T++ +    L+Q   +++ L I 
Sbjct: 933  ---------------------EFNSLNSMSVSRILEFTFLME---RLVQAFKTVEELKIV 968

Query: 241  SCPKLQSLVAE---EEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSS-LREIEI 296
            SC   ++++ +    E   ++    LS IL  I++R+C  +  +P+  +  S  L  + I
Sbjct: 969  SCALDETVLNDLWVNEVWLEKNPHGLSSILRLIEIRNCNIMKSIPKVLMVNSHFLERLYI 1028

Query: 297  YGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAG 356
              C S+V      LP  LK +EI  C  L+ L +   C ++S                  
Sbjct: 1029 CHCDSIVFVTMDQLPHSLKSLEISNCKNLRCLLDNGTCTSSS------------------ 1070

Query: 357  VQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEV 416
                      +  ++ +Q  S+      S LE ++I  CPSLTCI    ELP +++ L +
Sbjct: 1071 ---------IIMHDDNVQHGST----IISHLEYVYIGWCPSLTCISRSGELPESVKHLFI 1117

Query: 417  ------------GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSG 464
                        G LP S++ L++ SC +LESIA RL  NTSLE+I I  CENLK LP G
Sbjct: 1118 WNCSELSCLSMKGQLPKSIERLEIQSCPKLESIANRLHRNTSLESIQIWNCENLKSLPEG 1177

Query: 465  LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTI 524
            LH L  L+EI I  C NLVSFP+ GLP + L+ L I  C++L  LP  ++NL SL++L I
Sbjct: 1178 LHFLVNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEI 1237

Query: 525  GEGGELPSLEEDDGLPTNLHRLEIID--------NKKIWKFSSLRQLTISGCDDDMVSFP 576
            G    +    E +  P NL  L I D        N  ++K S LR LTI G +   +  P
Sbjct: 1238 GYCPSIQYFPEIN-FPDNLTSLWINDHNACEAMFNWGLYKLSFLRDLTIIGGN---LFMP 1293

Query: 577  PEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKGL 635
             E  +L T   LP+ L SL +  FP+LE LSS     L +L+ L + +CPKL   PEKGL
Sbjct: 1294 LE--KLGTM--LPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGL 1349

Query: 636  PSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWVFD 680
            PSSLL+LYI  CP + E+CRKD G+ W  +  +P V+ID K+++D
Sbjct: 1350 PSSLLELYIQDCPFLKEQCRKDKGRDWLKIADVPYVEIDGKFIYD 1394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber]

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 265/693 (38%), Positives = 354/693 (51%), Gaps = 77/693 (11%)

Query: 1   MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
           ML+P+  L++  +  YGG KFPTW GD SF  LV L+FE C  C +LP VGQLP LK L 
Sbjct: 98  MLQPNVKLKELTVKCYGGTKFPTWIGDPSFSNLVLLRFENCDKCNSLPPVGQLPFLKDLL 157

Query: 61  VCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHI 120
           + GM  VK +G EFYG     PF  LETLHFE+M  WE WIP G S   E F  LR+L I
Sbjct: 158 IKGMAGVKSVGREFYGESCSRPFQSLETLHFENMPRWEKWIPLGVS---EAFACLRKLSI 214

Query: 121 LRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGS 180
           +RC  L    P+HLP+L+ LVI GC  L+VSVS+LP LC   I G K++  ES+ G  GS
Sbjct: 215 IRCHNLVRKLPDHLPSLKKLVIHGCWNLVVSVSNLPMLCVLAIEGYKRVECESSVG-FGS 273

Query: 181 QNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIT 240
             S+V    S    +   L   + K+E L+I D ++ T +W+   E L  +  L+ L+I 
Sbjct: 274 PYSMVFSKISEFGHVTAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIE 333

Query: 241 SCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK-LPQSPLSL---SSLREIEI 296
            CP L S  A               +L+ I ++ C  L   LP+  L     + L  + +
Sbjct: 334 DCPTLVSFPAS----------GFPSMLKVIQIKSCSGLKSLLPEGTLHSRENACLVRLCV 383

Query: 297 YGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAG 356
             C S+ S     LP+ LK++EI  C  L+       C  +         + +       
Sbjct: 384 VRCDSMKSIARGQLPTTLKRLEISHCMNLQ-------CALDEGEGSSSSSVMH------- 429

Query: 357 VQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESL-- 414
                        +E I + S +       L+ L I  CPSLT + S  +LPATL  L  
Sbjct: 430 -------------DEDINNRSKTH------LQYLDIKSCPSLTTLTSSGKLPATLTHLLL 470

Query: 415 ----------EVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSG 464
                       G LP +L+ L++ S  +L+ IAERL  NT LE I I  C  LK LP  
Sbjct: 471 RECPKLMCLSSTGKLPAALQYLEIQSIPKLQKIAERLHQNTFLECIKIWNCHGLKSLPED 530

Query: 465 LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTI 524
           LHNL +L++  I  C +  SFP  GLP +    L I  CK L+ LP G+ NLTSLQ+L I
Sbjct: 531 LHNLSKLRQFQIVWCTSFSSFPAAGLP-SNPRVLGIKNCKNLKALPNGMRNLTSLQKLDI 589

Query: 525 GEG-GELPSLEEDDGLPTNLHRLEIIDNK--------KIWKFSSLRQLTISGCDDDMVSF 575
                 LPS +E  GLPTNL  L +ID K         + + +SL +L+I G   D+ SF
Sbjct: 590 SNRLDSLPSPQE--GLPTNLIELNMIDLKFYKPMFEWGLQQLTSLIKLSIHGECLDVDSF 647

Query: 576 PPEDIRLRTTLPLPACLASLMIGNFPNLERLS-SSIVDLQNLTHLELEDCPKLKYFPEKG 634
           P E       L LP  L+ L I  F NLE LS     +L +L  L++ +C KL   P++G
Sbjct: 648 PGERENGAMML-LPNSLSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEG 706

Query: 635 LPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTH 667
           LP SL QL I  CPL+++ C  + GQ W  + H
Sbjct: 707 LPPSLTQLEIRNCPLLSQHCNNEKGQEWSKIAH 739

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 260/698 (37%), Positives = 371/698 (53%), Gaps = 85/698 (12%)

Query: 1    MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            ML+PH  L++  I  Y G +F +W G   F  +V ++ E C  C +LP +G+LP LK L 
Sbjct: 756  MLQPHTKLKELTIKSYAGKEFSSWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHLKELY 815

Query: 61   VCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHI 120
            + GM +V+ +G+EFYG +  +PFP LETL F DMQ W+ W+P         FP L+ L +
Sbjct: 816  IRGMNAVESVGAEFYG-ECSLPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLV 874

Query: 121  LRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGS 180
             +CSKL+G  PE+L +L  L I  CEELLVS+++   L +  I GCK +V  +A      
Sbjct: 875  RKCSKLEGKLPENLDSLASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFEL 934

Query: 181  QNSVVCRDTSNQVFL-AGPL-KPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLT 238
              S+   + S    L  G L +  +  + +L+IN  +E T   K+   LLQ + SL RL 
Sbjct: 935  LESLYLSNISELTSLQTGELCRNGLNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLE 994

Query: 239  ITSCPKLQSLVAEE---EKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIE 295
            I       SL+ EE   E D+  QL  L C LE++ L+ C++L+KLP+    LSSL+E+ 
Sbjct: 995  IED----NSLLVEELGKEADELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELR 1050

Query: 296  IYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIA 355
            I+ CSSLVSFP+V LP  LK IEI EC +L    ++ +     +L  ++I  C SL    
Sbjct: 1051 IHECSSLVSFPDVGLPPSLKDIEITECHSLIYFAKSQI---PQNLRRIQIRDCRSLR--- 1104

Query: 356  GVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLE 415
                      +L   E + S SSS   + + LE L+I RC SLT +   ++L        
Sbjct: 1105 ----------SLVDNEAVGSCSSS---SHNCLEYLNIERCQSLTLLSLSDQLVR------ 1145

Query: 416  VGNLPPSLKSLDVWSCSELESIAER--LDNNTS--LETISISECENLKILPSGLHNLRQL 471
                  +L+ LD++ C +LE +A      NNT+  LE   I  C+NLK LP         
Sbjct: 1146 ------ALRELDIYDCEQLEFLAPDGLFCNNTNYFLENFRIRRCQNLKSLPR-------- 1191

Query: 472  QEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELP 531
                            GG+  + L  + I+ C RL+ LP+ +HN  SL++L I     L 
Sbjct: 1192 --------------LSGGIRGSNLREIRITDCDRLEALPEDMHNFNSLEKLIIDYREGLT 1237

Query: 532  SLEEDDGLPTNLHRL---EIIDNKKIW-------KFSSLRQLTISGCDDDMVSFPPEDIR 581
                    P NL  L   ++   K +W       + +SLR L I G D DMVSFPP+ +R
Sbjct: 1238 C-----SFPANLTSLMIWKVKSCKSLWELEWGLHRLTSLRYLWIGGEDPDMVSFPPDMVR 1292

Query: 582  LRTTLPLPACLASLMIGNFPNLERLSSSIVD-LQNLTHLELEDCPKLKYFPEKGLPSSLL 640
            + T   LP  L  L IG FPNL++LSS     L +L  LEL DCPKL   P++GLP SL 
Sbjct: 1293 METL--LPKSLTELSIGGFPNLKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLT 1350

Query: 641  QLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFKWV 678
            +L I GCP++ E+C+   G+YW  ++HIP + ID+K +
Sbjct: 1351 ELCIYGCPVLKERCQPGKGRYWHKISHIPYIDIDWKMI 1388

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 259/695 (37%), Positives = 363/695 (52%), Gaps = 64/695 (9%)

Query: 1    MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
             L+P+ NL++  I  YGG  FP W GD SF K+V L+  YC  C  LPS+G+L SLK L 
Sbjct: 767  FLQPNTNLKKLTIQSYGGLTFPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSLKKLC 826

Query: 61   VCGMTSVKRLGSEFYGNDT--PIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLREL 118
            V GM  VK +G EFYG  +    PFP LE L FEDM  WE+W         E +P+LREL
Sbjct: 827  VKGMQGVKSVGIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWC------SSESYPRLREL 880

Query: 119  HILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHL 178
             I  C KL    P HLP+L  L I  C +L+  + SLP L   I+  C + +  S  G L
Sbjct: 881  EIHHCPKLIQKLPSHLPSLVKLDIIDCPKLVAPLPSLPFLRDLIVAECNEAMLRSG-GDL 939

Query: 179  GSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLT 238
             S  ++   + SN  FL   L   +  LE LEI +  E  ++ +S     +++  ++ L 
Sbjct: 940  TSLITLRLENISNLTFLNEGLVRFLGALEVLEICNCSELKFLLQS-GVGFENLSCIRHLV 998

Query: 239  ITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYG 298
            I  CPKL  L+AE++         L C LEY+++  C  L KLP    SL+SLRE+ I  
Sbjct: 999  IVMCPKL-VLLAEDQP--------LPCNLEYLEINKCASLEKLPIGLQSLTSLRELSIQK 1049

Query: 299  CSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSS----LEILEIWICNSLTYI 354
            C  L S  E+  P  L  +E+ +C+ L+SLP+  M +  +     LE L+I  C SL   
Sbjct: 1050 CPKLCSLAEMDFPPMLISLELYDCEGLESLPDGMMINGENRNFCLLECLKIVHCPSLICF 1109

Query: 355  AGVQLPPSLKWTLTVE-EGIQSSSSSRRYTSSL--LEGLHISRCPSLTCIFSKNELPATL 411
               +LP  LK    ++   +QS             LE L I RCP L+  F +  LP+T+
Sbjct: 1110 PRGELPSKLKELEIIDCAKLQSLPEGLILGDHTCHLEFLRIHRCPLLSS-FPRGLLPSTM 1168

Query: 412  ESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSG-LHNLRQ 470
            + LE+ N            C +LESI+  L ++T+LE + I   + LKI  SG LH+L+ 
Sbjct: 1169 KRLEIRN------------CKQLESIS-LLSHSTTLEYLRI---DRLKINFSGCLHSLKH 1212

Query: 471  LQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGEL 530
            L E+ I+ C  L SFP+ G     L  L I  CK L+ LP  + + TSL+ L I +   L
Sbjct: 1213 LIELHIYSCSGLESFPERGFSSPNLKMLHIDDCKNLKSLPLQMQSFTSLRDLRIYDCPNL 1272

Query: 531  PSLEEDDGLPTNLHRLEIIDNKKI------WKFSSLRQLTISGCDDDMVSFPPEDIRLRT 584
             S  E +GL  NL    I + K +      W    L  L  +   +++  F   D     
Sbjct: 1273 VSFAE-EGLSLNLTSFWIRNCKNLKMPLYQWGLHGLTSLQ-TFVINNVAPFCDHD----- 1325

Query: 585  TLP-LPACLASLMIGNFPNLERLSSSIVDLQNLTHLELED---CPKLKYF-PEKGLPSSL 639
            +LP LP  L  L I  F NLE LSS  + LQNLT LE+ +   CPKL+ F P++GL ++L
Sbjct: 1326 SLPLLPRTLTYLSISKFHNLESLSS--MGLQNLTSLEILEIYSCPKLQTFLPKEGLSATL 1383

Query: 640  LQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKID 674
              L I  CP+I  +CRK+ G+ W +++HIP++ +D
Sbjct: 1384 SNLRIKFCPIIEARCRKNKGEDWPMISHIPRIDMD 1418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085123|emb|CBI28618.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 233/689 (33%), Positives = 347/689 (50%), Gaps = 80/689 (11%)

Query: 1    MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            ML+PH+NL+   I  YGG +FP+W GD SF K+  L  + C  C +LPS+GQLP LK L 
Sbjct: 653  MLQPHENLKNLSIEYYGGTEFPSWVGDPSFSKMEYLNLKGCKKCISLPSLGQLPLLKELI 712

Query: 61   VCGMTSVKRLGSEFYGND--TPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLREL 118
            + GM  +K +G +FYG+D  +  PF  LETL FE+++ WE+W   G   GVE FP LREL
Sbjct: 713  IEGMDGIKHVGPQFYGDDYSSIDPFQSLETLKFENIEEWEEWSSFG-DGGVEGFPCLREL 771

Query: 119  HILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHL 178
             I +C KL    P +LP+LE + I+ CE+L V    +  L   ++G   +I+       L
Sbjct: 772  SIFKCPKLTSKLPNYLPSLEGVWIDDCEKLAVLPKLVKLLNLDLLGSNVEIL--GTMVDL 829

Query: 179  GSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNEL-LQDICSLKRL 237
             S   +     S           +  KLEEL+I +  +   +  S+ +L L  + SL+RL
Sbjct: 830  RSLTFLQINQISTLKIFPEGFMQQSAKLEELKIVNCGDLVAL--SNQQLGLAHLASLRRL 887

Query: 238  TITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIY 297
            TI+ CPKL +L  E  K        +   LE +D++DC +L KLP     L SL E+ + 
Sbjct: 888  TISGCPKLVALPDEVNK--------MPPRLESLDIKDCHNLEKLPDELFKLESLSELRVE 939

Query: 298  GCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGV 357
            GC  L SFP++ LPSKLK++ I+ C A+K++ +  +  +N+SLE LEI  C+SL  +   
Sbjct: 940  GCQKLESFPDMGLPSKLKRLVIQNCGAMKAIQDGNL-RSNTSLEFLEIRSCSSLVSVLEG 998

Query: 358  QLPPSLKWT-LTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEV 416
             +P +LK+  ++  + ++S           LE L I  C SL   F   ELP +L+ LE+
Sbjct: 999  GIPTTLKYMRISYCKSLKSLPVEMMNNDMSLEYLEIEACASLLS-FPVGELPKSLKRLEI 1057

Query: 417  ---GNLPPS---------LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSG 464
               GN             L  L + +C  LE          +L  ++I+ C+ LK LP+ 
Sbjct: 1058 SICGNFLSLPSSLLNLVHLDFLHLENCPLLEYFPNTGLPTPNLRKLTIATCKKLKFLPNR 1117

Query: 465  LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTI 524
             HNL+ LQ++ +  C +LVS P+ GLP   L  LEI+ C++L                  
Sbjct: 1118 FHNLKSLQKLALSRCPSLVSLPKQGLP-TNLISLEITRCEKLNP---------------- 1160

Query: 525  GEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRT 584
                                    ID  K+ K ++LR     G         P  +    
Sbjct: 1161 ------------------------IDEWKLHKLTTLRTFLFEGI--------PGLVSFSN 1188

Query: 585  TLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYI 644
            T  LP  +  L I   P+L  +S  + +L +L  L++ DC KL+  P++GLP++L  L I
Sbjct: 1189 TYLLPDSITFLHIQELPDLLSISEGLQNLTSLETLKIRDCHKLQALPKEGLPATLSSLTI 1248

Query: 645  GGCPLIAEKCRKDGGQYWDLLTHIPKVKI 673
              CPLI  +C++D G+ W  +  IP V +
Sbjct: 1249 KNCPLIQSRCKQDTGEDWSKIMDIPNVDL 1277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487253|ref|XP_003633548.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 246/736 (33%), Positives = 359/736 (48%), Gaps = 123/736 (16%)

Query: 1    MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
            ML+PH+NL+   I  YGG +FP+W GD SF K+  L  + C  C +LPS+GQLP LK L 
Sbjct: 714  MLQPHENLKNLSIEYYGGTEFPSWVGDPSFSKMEYLNLKGCKKCISLPSLGQLPLLKELI 773

Query: 61   VCGMTSVKRLGSEFYGND--TPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLREL 118
            + GM  +K +G +FYG+D  +  PF  LETL FE+++ WE+W   G   GVE FP LREL
Sbjct: 774  IEGMDGIKHVGPQFYGDDYSSIDPFQSLETLKFENIEEWEEWSSFG-DGGVEGFPCLREL 832

Query: 119  HILRCSKLKGTFPEHLPALEMLVIEGCEELLVSV-------------------------- 152
             I +C KL   F     +LE L IE C+EL                              
Sbjct: 833  SIFKCPKLT-RFSHRFSSLEKLCIERCQELAAFSRLPSPENLESEDFPRLRVLRLVRCPK 891

Query: 153  -----SSLPSLCKFIIGGCKKIV-------------WESATGHLGSQNSV-------VCR 187
                 + LPSL    I  C+K+                S    LG+   +       + +
Sbjct: 892  LSKLPNYLPSLEGVWIDDCEKLAVLPKLVKLLNLDLLGSNVEILGTMVDLRSLTFLQINQ 951

Query: 188  DTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNEL-LQDICSLKRLTITSCPKLQ 246
             ++ ++F  G ++ +  KLEEL+I +  +   +  S+ +L L  + SL+RLTI+ CPKL 
Sbjct: 952  ISTLKIFPEGFMQ-QSAKLEELKIVNCGDLVAL--SNQQLGLAHLASLRRLTISGCPKLV 1008

Query: 247  SLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP 306
            +L  E  K        +   LE +D++DC +L KLP     L SL E+ + GC  L SFP
Sbjct: 1009 ALPDEVNK--------MPPRLESLDIKDCHNLEKLPDELFKLESLSELRVEGCQKLESFP 1060

Query: 307  EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWT 366
            ++ LPSKLK++ I+ C A+K++ +  +  +N+SLE LEI  C+SL  +    +P +LK+ 
Sbjct: 1061 DMGLPSKLKRLVIQNCGAMKAIQDGNL-RSNTSLEFLEIRSCSSLVSVLEGGIPTTLKYM 1119

Query: 367  -LTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKS 425
             ++  + ++S           LE L I  C             A+L S  VG LP SLK 
Sbjct: 1120 RISYCKSLKSLPVEMMNNDMSLEYLEIEAC-------------ASLLSFPVGELPKSLKR 1166

Query: 426  LDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSF 485
            L++  C    S+   L N   L+ + +  C  L+                         F
Sbjct: 1167 LEISICGNFLSLPSSLLNLVHLDFLHLENCPLLEY------------------------F 1202

Query: 486  PQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHR 545
            P  GLP   L +L I+ CK+L+ LP   HNL SLQ+L +     L SL +  GLPTNL  
Sbjct: 1203 PNTGLPTPNLRKLTIATCKKLKFLPNRFHNLKSLQKLALSRCPSLVSLPKQ-GLPTNLIS 1261

Query: 546  LEI--------IDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMI 597
            LEI        ID  K+ K ++LR     G         P  +    T  LP  +  L I
Sbjct: 1262 LEITRCEKLNPIDEWKLHKLTTLRTFLFEGI--------PGLVSFSNTYLLPDSITFLHI 1313

Query: 598  GNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKD 657
               P+L  +S  + +L +L  L++ DC KL+  P++GLP++L  L I  CPLI  +C++D
Sbjct: 1314 QELPDLLSISEGLQNLTSLETLKIRDCHKLQALPKEGLPATLSSLTIKNCPLIQSRCKQD 1373

Query: 658  GGQYWDLLTHIPKVKI 673
             G+ W  +  IP V +
Sbjct: 1374 TGEDWSKIMDIPNVDL 1389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 254/701 (36%), Positives = 352/701 (50%), Gaps = 79/701 (11%)

Query: 2    LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
            L+PH NL++  IS YGG +FP+W G  SF K+V LK   C  C  LP +G+LP L+ L +
Sbjct: 764  LQPHTNLKELKISFYGGTEFPSWVGHPSFSKIVHLKLSCCRKCTVLPPLGRLPLLRDLCI 823

Query: 62   CGMTSVKRLGSEFYGNDTPI-PFPCLETLHFEDMQGWEDWIPHGF-SQGVERFPKLRELH 119
             G+ +V+ +G EFYG+ + + PFP L+TL FEDMQ W+ W   G   +  E+FP L EL 
Sbjct: 824  QGLDAVETVGHEFYGDCSSVKPFPSLKTLTFEDMQEWKSWSAVGVDGEAEEQFPSLSELT 883

Query: 120  ILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLG 179
            +  C KL G FP  LP+   + I  C  L+ S   LP L +  +  C ++          
Sbjct: 884  LWNCPKLLGRFPSCLPSCVKITIAKCPMLVDSDEKLPVLGELKLEECDEV---------- 933

Query: 180  SQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTI 239
             +   +  ++S               L  L++  M   TY+     +LLQ + +LK L I
Sbjct: 934  -KPKCMFHNSS---------------LITLKLGSMSRLTYL---KGQLLQSLGALKVLMI 974

Query: 240  TSCPKLQSLVAEE---EKDQQQQLCQLSCI-----LEYIDLRDCQDLVKLP-QSPLSLSS 290
            +  PKL SL  +    E  +  Q   L+ I      +   L  C  L  LP  +   L S
Sbjct: 975  SDFPKLTSLWQKGTGLENFEHPQFVSLTEIGMPSTHKSSKLSGCDKLDLLPIHTVHMLLS 1034

Query: 291  LREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNS 350
            L ++ I  C +LVS PE  L S L+ + +R+C AL+SLP+     +N  LE LEI  C S
Sbjct: 1035 LEDLCIESCPNLVSIPEAGLLSSLRHLVLRDCKALRSLPDGM---SNCPLEDLEIEECPS 1091

Query: 351  LTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL----EGLHISRCPSLTCIFSKNE 406
            L    G  LP +LK       G++      RY + L     + +H    P   C F   E
Sbjct: 1092 LECFPGRMLPATLK-------GLKI-----RYCTELKSLPEDLMHNKNGPGTLCHFEHLE 1139

Query: 407  LPA--TLESLEVGNLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLKILPS 463
            +    +L+S   G LP  LK+L +W CS+L+ ++E  L ++ SLE ++IS+CE L   P 
Sbjct: 1140 IIGCPSLKSFPDGKLPTRLKTLKIWDCSQLKPLSEMMLHDDMSLEYLAISDCEALSSFPE 1199

Query: 464  GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLT 523
             L + + L E+ +  C  L  FP  G P A L  L I  CK L+ LP  +  LTSLQ+LT
Sbjct: 1200 CLSSFKHLSELNLSNCSALKLFPGVGFPPANLRTLTIYNCKNLKSLPNEMRKLTSLQELT 1259

Query: 524  IGEGGELPSLEEDDGLPTNLHRLEIIDNKKI------WKFSSL---RQLTISG-CDDDMV 573
            I     L S    D +P +L  LEI D   +      W   SL   R  +I+G C    V
Sbjct: 1260 ICSCPALKSFPNGD-MPPHLTSLEIWDCDNLDGCLSEWNLQSLTCLRDFSIAGGCFSHTV 1318

Query: 574  SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK 633
            SFP E   L      P  L S+ IG  PNLE LS  +  L  L  LE+ DCPKLK  P  
Sbjct: 1319 SFPDEKCLL------PTNLTSVWIGRLPNLESLSMQLQSLAYLEELEIVDCPKLKSLPRG 1372

Query: 634  GLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKID 674
             LP +L +  I  CPL+ ++C K  G YW L++HIP V+ID
Sbjct: 1373 CLPHALGRFSIRDCPLMTQRCSKLKGVYWPLISHIPCVEID 1413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487255|ref|XP_002269744.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 253/696 (36%), Positives = 341/696 (48%), Gaps = 144/696 (20%)

Query: 2    LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
            L+PH  +++  I  + G KFP W  D SF+ LV L+   C  C +LP +GQL SLK L +
Sbjct: 750  LQPHNKVKRLIIECFYGIKFPKWLEDPSFMNLVFLQLRDCKNCLSLPPLGQLQSLKDLCI 809

Query: 62   CGMTSVKRLGSEFYGND----TPI-PFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLR 116
              M  V+++G E YGN     T I PF  LE L FE+M  WE+W+     +GVE FP L+
Sbjct: 810  VKMDDVRKVGVELYGNSYCSSTSIKPFGSLEILRFEEMLEWEEWV----CRGVE-FPCLK 864

Query: 117  ELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATG 176
            EL+I +C  LK   PEHLP L  L I  CE+L+  +                        
Sbjct: 865  ELYIKKCPNLKKDLPEHLPKLTELEISKCEQLVCCL------------------------ 900

Query: 177  HLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKR 236
                                 P+ P I +LE  E +D+     + +S   L     SL  
Sbjct: 901  ---------------------PMAPSIRRLELKECDDV-----VVRSAGSL----TSLAY 930

Query: 237  LTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEI 296
            LTI +  K+      +E  Q   L QL C+        C +L ++P    SL+SL+ + I
Sbjct: 931  LTIRNVCKI-----PDELGQLNSLVQL-CVYR------CPELKEIPPILHSLTSLKNLNI 978

Query: 297  YGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAG 356
              C SL SFPE+ALP  L+ +EIR C  L+SLPE  M   N++L+ LEIW C SL     
Sbjct: 979  ENCESLASFPEMALPPMLESLEIRACPTLESLPEGMM-QNNTTLQCLEIWHCGSLR---- 1033

Query: 357  VQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEV 416
                       ++   I S           L+ L I  C          +L   L     
Sbjct: 1034 -----------SLPRDIDS-----------LKRLVICEC---------KKLELALHEDMT 1062

Query: 417  GNLPPSLKSLDVWSCSE-LESIAERLDNNTSLETISISECENLKIL--PSGLH--NLRQL 471
             N   SL   D+ SC + L S    L + T LET+    C NL+ L  P GLH  +L  L
Sbjct: 1063 HNHYASLTKFDITSCCDSLTSFP--LASFTKLETLDFFNCGNLESLYIPDGLHHVDLTSL 1120

Query: 472  QEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNL-TSLQQLTIGEGGEL 530
            Q + I  C NLVSFP+GGLP   L RL I  C++L+ LP+G+H L TSLQ L I    E+
Sbjct: 1121 QSLEIRNCPNLVSFPRGGLPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEI 1180

Query: 531  PSLEEDDGLPTNLHRLEI------IDNKKIWKFSSL---RQLTISGCDDDMVSFPPEDIR 581
             S  E  GLPTNL  L+I      + N+  W   +L   R LTI G +++   FP E   
Sbjct: 1181 DSFPEG-GLPTNLSELDIRNCNKLVANQMEWGLQTLPFLRTLTIEGYENE--RFPEERF- 1236

Query: 582  LRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLE---LEDCPKLKYFPEKGLPSS 638
                  LP+ L SL I  FPNL+ L +    LQ+LT LE   + +C  LK FP++GLPSS
Sbjct: 1237 ------LPSTLTSLEIRGFPNLKSLDNK--GLQHLTSLETLRIRECGNLKSFPKQGLPSS 1288

Query: 639  LLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKID 674
            L  LYI  CPL+ ++C++D G+ W  ++HIP +  D
Sbjct: 1289 LSSLYIEECPLLNKRCQRDKGKEWPKISHIPCIAFD 1324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766392|emb|CAN67818.1| hypothetical protein VITISV_007674 [Vitis vinifera]

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 244/700 (34%), Positives = 337/700 (48%), Gaps = 103/700 (14%)

Query: 2    LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
            L+PH NL +  I  YGG +FP W GD SF K+V +    C  C +LP +G LP LKH+ +
Sbjct: 771  LQPHFNLNKLKIGYYGGPEFPPWIGDVSFSKMVDINLVNCRNCTSLPCLGWLPMLKHVRI 830

Query: 62   CGMTSVKRLGSEFYGNDT--PIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELH 119
             G+  VK +G EFYG       PFP LE+L F  M  WEDW     S   E +P L  L 
Sbjct: 831  EGLNEVKIVGREFYGETCLPNKPFPSLESLSFSAMSQWEDWESPSLS---EPYPCLLHLE 887

Query: 120  ILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLG 179
            I+ C KL    P +LP+L  L I+ C + +  +  LPSL K  +G C + V  S    L 
Sbjct: 888  IINCPKLIKKLPTNLPSLVHLSIDTCPQWVSPLERLPSLSKLRVGDCNEAVLRSGL-ELP 946

Query: 180  SQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTI 239
            S   +          L       +  L+ L+I+   E T +W++  + +Q      +L  
Sbjct: 947  SLTELRIERIVGLTRLHEGCMQLLSGLQVLDIDRCDELTCLWENGFDGIQ------QLQT 1000

Query: 240  TSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGC 299
            +SCP+L SL  E+EK       +L   L+ + +  C +L KLP     L+ L E+EIY C
Sbjct: 1001 SSCPELVSL-GEKEKH------KLPSKLQSLKILRCNNLEKLPNGLHRLTCLGELEIYNC 1053

Query: 300  SSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSS--------LEILEIWICNSL 351
              LVSFPE+  P  L+++ I  C+ L+ LP+  M   + S        LE LEI  C SL
Sbjct: 1054 PKLVSFPELGFPPMLRRLVIVSCEGLRCLPDWMMVMKDGSNNGSDVCLLEYLEIDRCPSL 1113

Query: 352  TYIAGVQLPPSLK----WTLTVEEGI-----QSSSSSRRYTSSLLEGLHISRCPSLTCIF 402
                  +LP +LK    W     E +        S++   TS  L  L I  CPSLT   
Sbjct: 1114 IGFPEGELPTTLKQLRIWECEKLESLPGGMMHHDSNTTTATSGGLHVLEIWDCPSLTF-- 1171

Query: 403  SKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL--DNNTSLETISISECENLKI 460
                          G  P +LK L +W C++LESI++     NN+SLE +SI     LKI
Sbjct: 1172 -----------FPTGKFPSTLKKLQIWDCAQLESISKETFHSNNSSLEYLSIRSSPCLKI 1220

Query: 461  LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ 520
            +P  L+ LR+                           LEI+ C+ +++LP  L NLT+L 
Sbjct: 1221 VPDCLYKLRE---------------------------LEINNCENVELLPHQLQNLTALT 1253

Query: 521  QLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDI 580
             L I     + +     GL T                +SL++LTI G    + SF     
Sbjct: 1254 SLGIYRCENIKTPLSRWGLAT---------------LTSLKKLTIGGIFPRVASFSDG-- 1296

Query: 581  RLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLE---LEDCPKLKYF-PEKGLP 636
              +  L LP  L  L I +F NL+ LSS  + LQ LT LE   +EDCPKL+ F P +GLP
Sbjct: 1297 --QRPLILPTTLTFLFIQDFQNLKSLSS--LALQTLTSLEKLLIEDCPKLESFCPREGLP 1352

Query: 637  SSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFK 676
             +L +LYI  CPL+ ++C K  GQ W  + HIP V+ID K
Sbjct: 1353 DTLSRLYIKDCPLLKQRCSKRKGQDWPNIAHIPYVRIDDK 1392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	681
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.209	0.100	0.405	1.5e-48
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.209	0.135	0.4	8.3e-28
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.515	0.177	0.269	2.2e-18
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.518	0.195	0.277	7e-16
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.452	0.259	0.273	1.4e-13
TAIR|locus:2027528	1096	AT1G56540 [Arabidopsis thalian	0.309	0.192	0.331	7.5e-13
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.324	0.181	0.300	1.4e-12
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.562	0.294	0.248	6.2e-12
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.328	0.183	0.273	6.3e-12
TAIR|locus:2151506	1127	RPS6 "RESISTANT TO P. SYRINGAE	0.314	0.189	0.295	3.3e-11

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
 Identities = 60/148 (40%), Positives = 86/148 (58%)

Query:     1 MLEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLA 60
             MLEPH +L+ FCI  Y G  FP W GDSSF  + ++    C +C +LP VGQLPSLK+L+
Sbjct:   754 MLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLS 813

Query:    61 VCGMTSVKRLGSEFY---GNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRE 117
             +     ++++G +F+    N   +PF  L+ L F  M  W++WI      G+  FP L++
Sbjct:   814 IEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQK 871

Query:   118 LHILRCSKLKGTFPEHLPALEMLVIEGC 145
             L I RC  L+  FPE LP+   + I  C
Sbjct:   872 LIIQRCPSLRKKFPEGLPSSTEVTISDC 899

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 8.3e-28, Sum P(2) = 8.3e-28
 Identities = 60/150 (40%), Positives = 91/150 (60%)

Query:     2 LEPHKNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAV 61
             L PH+++E+  I  Y G +FP W  D SF ++V ++   C  C +LPS+GQLP LK L +
Sbjct:   761 LRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHI 820

Query:    62 CGMTSVKRLGSEFYGNDTPI------PFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKL 115
              GM  ++ +G +FY +D  +      PF  LETL F+++  W++W+    ++G + FP L
Sbjct:   821 SGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSL 879

Query:   116 RELHILRCSKLKGTFPEHLPALEMLVIEGC 145
             ++L ILRC +L GT P  LP+L  L I  C
Sbjct:   880 KKLFILRCPELTGTLPTFLPSLISLHIYKC 909

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 105/390 (26%), Positives = 175/390 (44%)

Query:   267 LEYIDLRDCQDLVKXXXXXXXXXXXREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDAL 325
             L+++DL     L K            E+ +  C SLV  P  V    KL+ + +  C ++
Sbjct:   666 LKWMDLSYSISL-KELPDLSTATNLEELILKYCVSLVKVPSCVGKLGKLQVLCLHGCTSI 724

Query:   326 KSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQXXXXXXXXXXX 385
               LP        + L+ L++  C+SL     V+LP S      +   I            
Sbjct:   725 LELPS--FTKNVTGLQSLDLNECSSL-----VELPSS------IGNAINLQNLDLGCLRL 771

Query:   386 LLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNT 445
             L   L I +  +L   F  N   + +E   +GN   +L++LD+ +CS L  +   + N  
Sbjct:   772 LKLPLSIVKFTNLKK-FILNGCSSLVELPFMGNAT-NLQNLDLGNCSSLVELPSSIGNAI 829

Query:   446 SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKR 505
             +L+ + +S C +L  LPS + N   L+ + + +C +LV  P        L RL++S C  
Sbjct:   830 NLQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSS 889

Query:   506 LQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEI------ID-NKKIWKFS 558
             L  LP  + N++ LQ L +     L  L    G  TNL RL++      ++    I   +
Sbjct:   890 LVELPSSVGNISELQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNIT 949

Query:   559 SLRQLTISGCDDDMVSFPPE--DIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNL 616
             +L++L +  C + +V  P    ++ L  TL L  C           LE L S+I +L++L
Sbjct:   950 NLQELNLCNCSN-LVKLPSSIGNLHLLFTLSLARC---------QKLEALPSNI-NLKSL 998

Query:   617 THLELEDCPKLKYFPEKGLPSSLLQLYIGG 646
               L+L DC + K FPE  + +++  LY+ G
Sbjct:   999 ERLDLTDCSQFKSFPE--ISTNIECLYLDG 1026

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 187 (70.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
 Identities = 107/386 (27%), Positives = 163/386 (42%)

Query:   292 REIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSL 351
             R++ + G S+LVS  ++   + L+++ I+ C++L SL    +     +L +L+   C S 
Sbjct:  1412 RKLHVLGNSNLVSL-QLHSCTALEELIIQSCESLSSLDGLQLL---GNLRLLQAHRCLSG 1467

Query:   352 TYIAG-VQLPPSLKWTLTVEEGIQXXXXXXXXXXXLLEGLHI---SRCPSL---TCIFSK 404
                 G   LP SL+     E   +           LL  LH+   S   SL   +C  S 
Sbjct:  1468 HGEDGRCILPQSLEELYIHEYSQETLQPCFSGNLTLLRKLHVLGNSNLVSLQLHSCT-SL 1526

Query:   405 NELPA----TLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKI 460
              EL      +L SL+   L  +L+ L    C        R     SLE + ISE     +
Sbjct:  1527 EELKIQSCESLSSLDGLQLLGNLRLLQAHRCLSGHGEDGRCILPQSLEELFISEYSLETL 1586

Query:   461 LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ 520
              P  L NL  L+++ +    +L S       C  L  L+I  C  L  L +GL  L +L+
Sbjct:  1587 QPCFLTNLTCLKQLEVSGTTSLKSLELQS--CTALEHLKIQGCASLATL-EGLQFLHALR 1643

Query:   521 QLTIGEGGELP-----SLEEDDGLPTNLHRLEIID----NKKIWK-FSSLRQLTISGCDD 570
              + +     LP     S E+   L   L RL+I D         K  +SL++L ++ C  
Sbjct:  1644 HMKVFRCPGLPPYLGSSSEQGYELCPRLERLDIDDPSILTTSFCKHLTSLQRLELNYCGS 1703

Query:   571 DMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYF 630
             ++     E  R    L L   L  L      NL  L + +  L +L  LE+  C  +   
Sbjct:  1704 EVARLTDEQER---ALQLLTSLQELRFKYCYNLIDLPAGLHSLPSLKRLEIRSCRSIARL 1760

Query:   631 PEKGLPSSLLQLYIGGCPL-IAEKCR 655
             PEKGLP S  +L I  C   +A++CR
Sbjct:  1761 PEKGLPPSFEELDIIACSNELAQQCR 1786

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 98/358 (27%), Positives = 162/358 (45%)

Query:   314 LKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSL-KWTLTVEEG 372
             LK +++  C  LK LP+     T ++L+ L +  C SL     V+LP S+   T  +E  
Sbjct:   659 LKWMDLSFCVNLKELPDF---STATNLQELRLINCLSL-----VELPSSIGNATNLLELD 710

Query:   373 IQXXXXXXXXXXXL-----LEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLD 427
             +            +     L+ L ++RC SL       +LP++      GN+  SLK L+
Sbjct:   711 LIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLV------KLPSSF-----GNVT-SLKELN 758

Query:   428 VWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ 487
             +  CS L  I   + N  +L+ +    C +L  LPS + N   L+E+ +  C +L+  P 
Sbjct:   759 LSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPS 818

Query:   488 GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE 547
               L   +L  L +S C  L  LP  + N+ +LQ L + +   L  L       TNL  L 
Sbjct:   819 SMLNLTRLEDLNLSGCLSLVKLPS-IGNVINLQSLYLSDCSSLMELPFTIENATNLDTLY 877

Query:   548 I--IDN-----KKIWKFSSLRQLTISGCDD--DMVSFPPEDIRLRTTLPLPACLASLMIG 598
             +    N       IW  ++L+ L ++GC    ++ S     I L++ L L  C +SL+  
Sbjct:   878 LDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQS-LSLMKC-SSLV-- 933

Query:   599 NFPNLERLSSSIVDLQNLTHLELEDCP---KLKYFPEKGLPSSLLQLYIGGCPLIAEK 653
                    L SSI  + NL++L++ +C    +L       +P SL+ L  G C  + ++
Sbjct:   934 ------ELPSSIWRISNLSYLDVSNCSSLLELNLVSHPVVPDSLI-LDAGDCESLVQR 984

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2027528 AT1G56540 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 7.5e-13, P = 7.5e-13
 Identities = 77/232 (33%), Positives = 117/232 (50%)

Query:   420 PPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWEC 479
             P +L  L++   S+LE + E      +L+T+ +S    LK LP+ L N + L+ + + EC
Sbjct:   602 PENLVELNMPD-SQLEKLWEGTQLLANLKTMKLSRSSRLKELPN-LSNAKNLERLDLHEC 659

Query:   480 ENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGL 539
               L+  P       KL  LE ++C+RLQV+P  L NL SL+ + +     L S  +   +
Sbjct:   660 VALLELPSSISNLHKLYFLETNHCRRLQVIPT-LTNLVSLEDIKMMGCLRLKSFPD---I 715

Query:   540 PTNLHRLEIIDNKKIWKF-SSLRQLT-ISGCDDDMVSFPPEDIRLRT--TLPLPACLASL 595
             P N+ RL +++   I +F +SLR  + I   D   +S     + L+T  TL LP  +  L
Sbjct:   716 PANIIRLSVMETT-IAEFPASLRHFSHIESFD---IS---GSVNLKTFSTL-LPTSVTEL 767

Query:   596 MIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGC 647
              I N   +E ++  I  L NL  L L +C KL   P+  LPSSL  L    C
Sbjct:   768 HIDN-SGIESITDCIKGLHNLRVLALSNCKKLTSLPK--LPSSLKWLRASHC 816

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 71/236 (30%), Positives = 104/236 (44%)

Query:   422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECEN 481
             +L+ L++  CS L  +   + N T L  + +S C +L  LPS + N   LQ I    CEN
Sbjct:   698 NLEVLNLNGCSSLVELPFSIGNATKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCEN 757

Query:   482 LVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPT 541
             LV  P        L  L++S C  L+ LP  + N T+L++L +     L  L    G  T
Sbjct:   758 LVELPSSIGNATNLKELDLSCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSSIGNCT 817

Query:   542 NLHRLEIIDNKKIWKFSS-------LRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLAS 594
             NL  L +     + K  S       L +L ++GC+  +V  P   I   T L +      
Sbjct:   818 NLKELHLTCCSSLIKLPSSIGNAINLEKLILAGCES-LVELP-SFIGKATNLKI------ 869

Query:   595 LMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI 650
             L +G    L  L S I +L  L+ L L  C KL+  P       L +L +  C L+
Sbjct:   870 LNLGYLSCLVELPSFIGNLHKLSELRLRGCKKLQVLPTNINLEFLNELDLTDCILL 925

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
 Identities = 110/442 (24%), Positives = 192/442 (43%)

Query:   267 LEYIDLRDCQDLVKXXXXXXXXXXXREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDAL 325
             LE +DL + ++L +             I +  C SLV+ P  +    +L ++E++EC  L
Sbjct:   775 LEGMDLSESENLTEIPDLSKATKLESLI-LNNCKSLVTLPSTIGNLHRLVRLEMKECTGL 833

Query:   326 KSLPEAWMCDTN-SSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQXXXXXXXXXX 384
             + LP     D N SSLE L++  C+SL     +    ++ W       I+          
Sbjct:   834 EVLPT----DVNLSSLETLDLSGCSSLRSFPLIST--NIVWLYLENTAIEEIPSTIGNLH 887

Query:   385 XLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDV------WSCSELESIA 438
              L+  L + +C  L  + +   L ++LE+L++     SL+S  +      W   E  +I 
Sbjct:   888 RLVR-LEMKKCTGLEVLPTDVNL-SSLETLDLSGCS-SLRSFPLISESIKWLYLENTAIE 944

Query:   439 E--RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT 496
             E   L   T+L+ + ++ C++L  LP+ + NL++L    + EC  L   P   +  + L 
Sbjct:   945 EIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPID-VNLSSLM 1003

Query:   497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIW- 555
              L++S C  L+  P    N+  L         E  ++EE      NLHRL  ++ K+   
Sbjct:  1004 ILDLSGCSSLRTFPLISTNIVWLYL-------ENTAIEEIPSTIGNLHRLVKLEMKECTG 1056

Query:   556 --------KFSSLRQLTISGCDD----DMVSFPPEDIRLRTTL--PLPAC------LASL 595
                       SSL  L +SGC       ++S   E + L+ T    +P C      L  L
Sbjct:  1057 LEVLPTDVNLSSLMILDLSGCSSLRTFPLISTRIECLYLQNTAIEEVPCCIEDFTRLTVL 1116

Query:   596 MIGNFPNLERLSSSIVDLQNLTHLELEDCPK-LKYFPEKGLPSSLLQLYIGGCPLIAEKC 654
             M+     L+ +S +I  L  L   +  DC   +K   +  + +++ + ++   PL     
Sbjct:  1117 MMYCCQRLKTISPNIFRLTRLELADFTDCRGVIKALSDATVVATM-EDHVSCVPL----- 1170

Query:   655 RKDGGQY-WDLLTHIPKVKIDF 675
               +  +Y WD L H+P  K++F
Sbjct:  1171 -SENIEYIWDKLYHLPS-KLNF 1190

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 67/245 (27%), Positives = 108/245 (44%)

Query:   415 EVGNLPPS--LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQ 472
             E+ NL  +  L+ L +  CS L  +   ++  TSL+ + +  C +L  LPS   N  +L+
Sbjct:   731 ELPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPS-FGNATKLE 789

Query:   473 EIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS 532
             E+ +  C +L   P   +    L +L +  C R+  LP  + N T+LQ+L +G    L  
Sbjct:   790 ELYLENCSSLEKLPPS-INANNLQQLSLINCSRVVELP-AIENATNLQKLDLGNCSSLIE 847

Query:   533 LEEDDGLPTNLHRLEIIDNKKIWKFSS-------LRQLTISGCDDDMVSFPPE-DIRLRT 584
             L    G  TNL  L I     + K  S       L++  +S C + +V  P   +++   
Sbjct:   848 LPLSIGTATNLKELNISGCSSLVKLPSSIGDITNLKEFDLSNCSN-LVELPININLKFLD 906

Query:   585 TLPLPACLASLMIGNFPNLER--LSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQL 642
             TL L  C     + +FP +     +     +  L  L + +C  L   P+  LP SL  L
Sbjct:   907 TLNLAGCS---QLKSFPEISTKIFTDCYQRMSRLRDLRINNCNNLVSLPQ--LPDSLAYL 961

Query:   643 YIGGC 647
             Y   C
Sbjct:   962 YADNC 966

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 68/230 (29%), Positives = 107/230 (46%)

Query:   420 PPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWEC 479
             P +L  L +   S+LE + + + +   L  + +    NLK +P  L     L+ + +  C
Sbjct:   609 PENLVKLQMQQ-SKLEKLWDGVHSLAGLRNMDLRGSRNLKEIPD-LSMATNLETLKLSSC 666

Query:   480 ENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGL 539
              +LV  P       KL  L++SYC  L+ +P G+ NL SL +L +     L S  +   +
Sbjct:   667 SSLVELPSSIQYLNKLNDLDMSYCDHLETIPSGV-NLKSLDRLNLSGCSRLKSFLD---I 722

Query:   540 PTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLP--LPACLASLMI 597
             PTN+  L+I     I   S+LR   +    D+++    E ++LRT L   L   L  L  
Sbjct:   723 PTNISWLDIGQTADIP--SNLRLQNL----DELILC--ERVQLRTPLMTMLSPTLTRLTF 774

Query:   598 GNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGC 647
              N P+   + SSI +L  L HLE+ +C  L   P      SL+ L +  C
Sbjct:   775 SNNPSFVEVPSSIQNLYQLEHLEIMNCRNLVTLPTGINLDSLISLDLSHC 824

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	681
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-16
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-10

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 82.2 bits (203), Expect = 5e-16
 Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 29/227 (12%)

Query: 423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENL 482
           L+++D+     L+ I + L   T+LET+ +S+C +L  LPS +  L +L+++ +  CENL
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694

Query: 483 VSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTN 542
              P  G+    L RL +S C RL+  P      T++  L + E     ++EE    P+N
Sbjct: 695 EILPT-GINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDE----TAIEE---FPSN 743

Query: 543 LHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTL--PLPACLASLMIGNF 600
           L  LE +D   + +  S +                E ++  T L   L   L  L + + 
Sbjct: 744 LR-LENLDELILCEMKSEKLW--------------ERVQPLTPLMTMLSPSLTRLFLSDI 788

Query: 601 PNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGC 647
           P+L  L SSI +L  L HLE+E+C  L+  P      SL  L + GC
Sbjct: 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 63.4 bits (154), Expect = 3e-10
 Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 45/257 (17%)

Query: 267 LEYIDLRDCQDLVKLPQSPLSL-SSLREIEIYGCSSLVSFP-EVALPSKLKKIEIRECDA 324
           L  IDLR  ++L ++P   LS+ ++L  +++  CSSLV  P  +   +KL+ +++  C+ 
Sbjct: 636 LRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693

Query: 325 LKSLPEAWMCDTN-SSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYT 383
           L+ LP       N  SL  L +  C+ L     +    ++ W    E  I+   S+ R  
Sbjct: 694 LEILPTG----INLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFPSNLR-- 745

Query: 384 SSLLEGL-HISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLD 442
              LE L  +  C   +    +   P T          P +  L                
Sbjct: 746 ---LENLDELILCEMKSEKLWERVQPLT----------PLMTML---------------- 776

Query: 443 NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502
            + SL  + +S+  +L  LPS + NL +L+ + I  C NL + P  G+    L  L++S 
Sbjct: 777 -SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GINLESLESLDLSG 834

Query: 503 CKRLQVLPKGLHNLTSL 519
           C RL+  P    N++ L
Sbjct: 835 CSRLRTFPDISTNISDL 851

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	681
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.85
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.49
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.4
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.32
KOG4341	483	consensus F-box protein containing LRR [General fu	99.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.26
KOG4341	483	consensus F-box protein containing LRR [General fu	99.24
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.22
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.21
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.2
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.19
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.7
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.41
PRK15386	426	type III secretion protein GogB; Provisional	98.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.31
PRK15386	426	type III secretion protein GogB; Provisional	98.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.28
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
PLN03150	623	hypothetical protein; Provisional	98.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.19
PLN03150	623	hypothetical protein; Provisional	98.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.14
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.65
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.84
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.94
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.31
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	80.58

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.7e-35  Score=346.05  Aligned_cols=522  Identities=16%  Similarity=0.169  Sum_probs=369.8

Q ss_pred             cceeEEEEeecCCCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccc
Q 045938           31 LKLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGV  109 (681)
Q Consensus        31 ~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  109 (681)
                      .+++.|++++++--..+++ +..+++|+.|+++++.--..++...+..     +.+|++|++++..- .....      .
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~-----l~~L~~L~Ls~n~l-~~~~p------~  136 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT-----SSSLRYLNLSNNNF-TGSIP------R  136 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhcc-----CCCCCEEECcCCcc-ccccC------c
Confidence            4788999988643233443 8889999999998886223566555433     78899999987532 22111      2


Q ss_pred             cccCCcceEeeccCccccccCCC---CCCCccEEEEccCCC---ceeecCCCCcccEEEECCCCCceee-ccccccCCCC
Q 045938          110 ERFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEE---LLVSVSSLPSLCKFIIGGCKKIVWE-SATGHLGSQN  182 (681)
Q Consensus       110 ~~~~~L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~  182 (681)
                      ..+++|++|++++| .+.+.+|.   .+++|++|++++|..   ....+..+++|++|++++|...... ..        
T Consensus       137 ~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--------  207 (968)
T PLN00113        137 GSIPNLETLDLSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE--------  207 (968)
T ss_pred             cccCCCCEEECcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH--------
Confidence            35889999999886 34445554   468899999988753   2335667889999999888643211 10        


Q ss_pred             cceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhh
Q 045938          183 SVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQ  262 (681)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~  262 (681)
                                       ...+.+|++|.+.++....    .....+..+++|++|++++|.....+|..     +.    
T Consensus       208 -----------------l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~----  257 (968)
T PLN00113        208 -----------------LGQMKSLKWIYLGYNNLSG----EIPYEIGGLTSLNHLDLVYNNLTGPIPSS-----LG----  257 (968)
T ss_pred             -----------------HcCcCCccEEECcCCccCC----cCChhHhcCCCCCEEECcCceeccccChh-----Hh----
Confidence                             0135677777777654322    22334578899999999987433333332     22    


Q ss_pred             ccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccc
Q 045938          263 LSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLE  341 (681)
Q Consensus       263 ~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  341 (681)
                      .+++|++|++++|...+.+|..+..+++|++|++++|.....+|. ...+++|++|++++|.....+|..+  ..+++|+
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~  335 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQ  335 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCC
Confidence            348899999999888777888888899999999998864444443 3457889999999988666666655  6788999


Q ss_pred             eeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938          342 ILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP  421 (681)
Q Consensus       342 ~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~  421 (681)
                      .|++++|.-...++..                       ....++|+.|+++++. +..     .++..     +..++.
T Consensus       336 ~L~L~~n~l~~~~p~~-----------------------l~~~~~L~~L~Ls~n~-l~~-----~~p~~-----~~~~~~  381 (968)
T PLN00113        336 VLQLWSNKFSGEIPKN-----------------------LGKHNNLTVLDLSTNN-LTG-----EIPEG-----LCSSGN  381 (968)
T ss_pred             EEECcCCCCcCcCChH-----------------------HhCCCCCcEEECCCCe-eEe-----eCChh-----HhCcCC
Confidence            9999886433222211                       0112357888877743 221     11111     223333


Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                       ++.|++++|...+.+|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.....++..+..+++|+.|+++
T Consensus       382 -L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  460 (968)
T PLN00113        382 -LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA  460 (968)
T ss_pred             -CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence             8888888888877788888888899999999988888888888888899999998888666666666678889999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCc-
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMV-  573 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~-  573 (681)
                      +|.....+|..+ ..++|+.|++++|...+.+|..++.+++|++|++++|..       +.++++|++|++++|  .+. 
T Consensus       461 ~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~  537 (968)
T PLN00113        461 RNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN--QLSG  537 (968)
T ss_pred             CceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC--cccc
Confidence            988777776654 457889999998888878887788888899999998876       347888999999986  343 


Q ss_pred             CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938          574 SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l  650 (681)
                      .+|...       ..+++|++|+++++.-...+|..+..+++|+.|++++|+....+|..+.+.++....+.+|+.+
T Consensus       538 ~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l  607 (968)
T PLN00113        538 QIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL  607 (968)
T ss_pred             cCChhH-------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence            344433       4667899999998755557888888999999999999987778887655555555556666644

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-34  Score=341.67  Aligned_cols=504  Identities=19%  Similarity=0.160  Sum_probs=382.8

Q ss_pred             CCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCC
Q 045938           53 LPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPE  132 (681)
Q Consensus        53 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  132 (681)
                      ..+++.|+++++. +.......+..     +++|+.|+++++. +........   ...+++|++|+++++ ++.+.+|.
T Consensus        68 ~~~v~~L~L~~~~-i~~~~~~~~~~-----l~~L~~L~Ls~n~-~~~~ip~~~---~~~l~~L~~L~Ls~n-~l~~~~p~  136 (968)
T PLN00113         68 SSRVVSIDLSGKN-ISGKISSAIFR-----LPYIQTINLSNNQ-LSGPIPDDI---FTTSSSLRYLNLSNN-NFTGSIPR  136 (968)
T ss_pred             CCcEEEEEecCCC-ccccCChHHhC-----CCCCCEEECCCCc-cCCcCChHH---hccCCCCCEEECcCC-ccccccCc
Confidence            3578999998875 54443333333     8999999998853 221111111   236899999999986 44446664


Q ss_pred             -CCCCccEEEEccCCCc---eeecCCCCcccEEEECCCCCcee-eccccccCCCCcceeecCCCcccccCCCCCCCCCcc
Q 045938          133 -HLPALEMLVIEGCEEL---LVSVSSLPSLCKFIIGGCKKIVW-ESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE  207 (681)
Q Consensus       133 -~l~~L~~L~i~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  207 (681)
                       .+++|++|++++|...   ...++.+++|++|++++|..... +..                         ...+++|+
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-------------------------~~~l~~L~  191 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-------------------------LTNLTSLE  191 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-------------------------hhhCcCCC
Confidence             5799999999998642   23567799999999999874321 111                         01367888


Q ss_pred             eEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCC
Q 045938          208 ELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLS  287 (681)
Q Consensus       208 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~  287 (681)
                      +|++.++.....    ....+..+++|+.|+++++.-...+|..     +.    .+++|++|++++|...+.+|..++.
T Consensus       192 ~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~----~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        192 FLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGEIPYE-----IG----GLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             eeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCcCChh-----Hh----cCCCCCEEECcCceeccccChhHhC
Confidence            888887754322    2344688999999999998544344433     22    3489999999999987789999999


Q ss_pred             CCCcceEEEeCCCCceeec-CCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeE
Q 045938          288 LSSLREIEIYGCSSLVSFP-EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWT  366 (681)
Q Consensus       288 l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~  366 (681)
                      +++|++|++++|.....+| ....+++|++|++++|.....+|..+  ..+++|+.|++++|.....++..         
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~---------  327 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVA---------  327 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChh---------
Confidence            9999999999887443444 34558999999999998655677665  78899999999886433222210         


Q ss_pred             EEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCC
Q 045938          367 LTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTS  446 (681)
Q Consensus       367 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~  446 (681)
                                    ....++|++|+++++.--..      +|..     ++.++. |+.|++++|...+.+|..+..+++
T Consensus       328 --------------~~~l~~L~~L~L~~n~l~~~------~p~~-----l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        328 --------------LTSLPRLQVLQLWSNKFSGE------IPKN-----LGKHNN-LTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             --------------HhcCCCCCEEECcCCCCcCc------CChH-----HhCCCC-CcEEECCCCeeEeeCChhHhCcCC
Confidence                          11234689999888542211      1211     445555 999999999888888888999999


Q ss_pred             ccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecc
Q 045938          447 LETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE  526 (681)
Q Consensus       447 L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~  526 (681)
                      |+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.....++..+..+++|+.|++++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            99999999999999999999999999999999987778888888899999999999998888888888899999999999


Q ss_pred             cCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecc
Q 045938          527 GGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN  599 (681)
Q Consensus       527 ~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~  599 (681)
                      |...+.+|..+ ..++|+.|++++|+.       +.++++|+.|++++|. ....+|...       ..+++|++|++++
T Consensus       462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~-------~~l~~L~~L~Ls~  532 (968)
T PLN00113        462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEIPDEL-------SSCKKLVSLDLSH  532 (968)
T ss_pred             ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCc-ceeeCChHH-------cCccCCCEEECCC
Confidence            99888777744 468999999999987       3478899999999972 233556554       4678999999999


Q ss_pred             cCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeCCchhHH
Q 045938          600 FPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLIA  651 (681)
Q Consensus       600 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~  651 (681)
                      +.-...+|..+..+++|+.|++++|.....+|.. ..+++|++|++++|+...
T Consensus       533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            8555577888999999999999999777778874 457899999999998553

>PLN03210 Resistant to P

Probab=99.91  E-value=1.5e-23  Score=247.34  Aligned_cols=311  Identities=24%  Similarity=0.324  Sum_probs=172.5

Q ss_pred             cCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccce
Q 045938          264 SCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEI  342 (681)
Q Consensus       264 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~  342 (681)
                      +++|+.|++.+++. +.+|..+ .+.+|++|++.++. +..++. ...+++|+.|+++++..+..+|..   ..+++|+.
T Consensus       588 p~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~  661 (1153)
T PLN03210        588 PPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLET  661 (1153)
T ss_pred             CcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccE
Confidence            34566666666554 5555544 35566666666543 444432 233566666666666555555543   45566666


Q ss_pred             eeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCC
Q 045938          343 LEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPS  422 (681)
Q Consensus       343 L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~  422 (681)
                      |++++|..+..+|..-  .                     ..++|+.|++++|.+++. ++.           ...++ +
T Consensus       662 L~L~~c~~L~~lp~si--~---------------------~L~~L~~L~L~~c~~L~~-Lp~-----------~i~l~-s  705 (1153)
T PLN03210        662 LKLSDCSSLVELPSSI--Q---------------------YLNKLEDLDMSRCENLEI-LPT-----------GINLK-S  705 (1153)
T ss_pred             EEecCCCCccccchhh--h---------------------ccCCCCEEeCCCCCCcCc-cCC-----------cCCCC-C
Confidence            6666666555544220  0                     011344444444444443 110           00111 2


Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCce------ec-CCCCCCCCCc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLV------SF-PQGGLPCAKL  495 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~------~l-~~~~~~~~~L  495 (681)
                      |+.|++++|..+..+|.   ..++|++|++++|.+. .+|..+ .+++|+.|.+.++....      .+ +.....+++|
T Consensus       706 L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            55555555544433331   1234455555554432 233332 24555555554432110      00 0111223566


Q ss_pred             ceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCccccc----CCcccEEEEeccCCC
Q 045938          496 TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWK----FSSLRQLTISGCDDD  571 (681)
Q Consensus       496 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----l~~L~~L~l~~~~~~  571 (681)
                      +.|++++|.....+|..++.+++|+.|++++|..++.+|..+ .+++|+.|++++|..+..    .++|+.|++++|  .
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n--~  857 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT--G  857 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC--C
Confidence            777777766666666666667777777777666666666533 566677777776665433    246777777776  5


Q ss_pred             CcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938          572 MVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP  631 (681)
Q Consensus       572 ~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~  631 (681)
                      ++.+|...       ..+++|+.|++.+|++++.+|..+..+++|+.+++++|+.++.++
T Consensus       858 i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        858 IEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             CccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence            66677654       466778888888888888888877788888888888888777543

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=2.5e-24  Score=216.20  Aligned_cols=361  Identities=16%  Similarity=0.197  Sum_probs=261.8

Q ss_pred             cccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec--CC
Q 045938          231 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EV  308 (681)
Q Consensus       231 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~  308 (681)
                      .+.-+.|++++. .+..+....    +..+    ++|+.+++..|.. ..+|...+...+|+.|+|..|- +..+.  .+
T Consensus        77 p~~t~~LdlsnN-kl~~id~~~----f~nl----~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N~-I~sv~se~L  145 (873)
T KOG4194|consen   77 PSQTQTLDLSNN-KLSHIDFEF----FYNL----PNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL  145 (873)
T ss_pred             ccceeeeecccc-ccccCcHHH----HhcC----Ccceeeeeccchh-hhcccccccccceeEEeeeccc-cccccHHHH
Confidence            456677888875 666544332    2333    8888888888765 7778766666678888888664 66554  34


Q ss_pred             CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938          309 ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE  388 (681)
Q Consensus       309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~  388 (681)
                      ..++.|++||++.|. +..++...+ ..-+++++|++++ +.++.+....+. +                     +.+|.
T Consensus       146 ~~l~alrslDLSrN~-is~i~~~sf-p~~~ni~~L~La~-N~It~l~~~~F~-~---------------------lnsL~  200 (873)
T KOG4194|consen  146 SALPALRSLDLSRNL-ISEIPKPSF-PAKVNIKKLNLAS-NRITTLETGHFD-S---------------------LNSLL  200 (873)
T ss_pred             HhHhhhhhhhhhhch-hhcccCCCC-CCCCCceEEeecc-cccccccccccc-c---------------------cchhe
Confidence            457888888888876 666665543 4456788888887 455554332211 1                     11366


Q ss_pred             eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCc
Q 045938          389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNL  468 (681)
Q Consensus       389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l  468 (681)
                      .|.+++ +.++. ++     ..    .+..+|. |+.|++.+|++-..-...|.++++|+.|.+..|.+...--+.|..+
T Consensus       201 tlkLsr-Nritt-Lp-----~r----~Fk~L~~-L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l  268 (873)
T KOG4194|consen  201 TLKLSR-NRITT-LP-----QR----SFKRLPK-LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL  268 (873)
T ss_pred             eeeccc-Ccccc-cC-----HH----Hhhhcch-hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence            666666 33333 11     10    1555777 9999999986544335678899999999999998876656667789


Q ss_pred             ccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938          469 RQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE  547 (681)
Q Consensus       469 ~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  547 (681)
                      .++++|++..|+. ..+.. +++.+.+|+.|++++|..-+.-+++++.+++|++|++++|....--+.++..+..|++|.
T Consensus       269 ~kme~l~L~~N~l-~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  269 EKMEHLNLETNRL-QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             cccceeecccchh-hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence            9999999998874 44444 567889999999999998777788899999999999999997777777788899999999


Q ss_pred             eecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEE
Q 045938          548 IIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHL  619 (681)
Q Consensus       548 l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L  619 (681)
                      |++|.+       +..+.+|++|+|++|  .+....++   .+..-..+++|++|++.++ +++.+++ .|..+++|++|
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N--~ls~~IED---aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~L  421 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSN--ELSWCIED---AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHL  421 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCC--eEEEEEec---chhhhccchhhhheeecCc-eeeecchhhhccCccccee
Confidence            999987       458999999999997  44332222   2333345789999999994 8999997 78889999999


Q ss_pred             eecCCCCCcccCCCCC-cccccEEEeCCc
Q 045938          620 ELEDCPKLKYFPEKGL-PSSLLQLYIGGC  647 (681)
Q Consensus       620 ~l~~c~~l~~l~~~~~-~~~L~~L~i~~c  647 (681)
                      ++.+| -+.++-.+++ ...|++|.+..-
T Consensus       422 dL~~N-aiaSIq~nAFe~m~Lk~Lv~nSs  449 (873)
T KOG4194|consen  422 DLGDN-AIASIQPNAFEPMELKELVMNSS  449 (873)
T ss_pred             cCCCC-cceeecccccccchhhhhhhccc
Confidence            99997 5666655444 338888887753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.9e-24  Score=217.04  Aligned_cols=358  Identities=18%  Similarity=0.224  Sum_probs=271.6

Q ss_pred             CCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCC
Q 045938          204 PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQ  283 (681)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~  283 (681)
                      +.-+.|++++..-..    ....++..+++|+.+++.+. .++.+|...         ..-.+|+.|++..|.+...-.+
T Consensus        78 ~~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~---------~~sghl~~L~L~~N~I~sv~se  143 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKN-ELTRIPRFG---------HESGHLEKLDLRHNLISSVTSE  143 (873)
T ss_pred             cceeeeecccccccc----CcHHHHhcCCcceeeeeccc-hhhhccccc---------ccccceeEEeeeccccccccHH
Confidence            344567777654222    34556789999999999985 777777663         1226799999999877444445


Q ss_pred             CCCCCCCcceEEEeCCCCceeecCCCCC--CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCC
Q 045938          284 SPLSLSSLREIEIYGCSSLVSFPEVALP--SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPP  361 (681)
Q Consensus       284 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  361 (681)
                      .+..++.|+.|||+.|. +..++...++  .++++|++++|. ++.+....+ ..+.+|-.|.++. +.++.+|...+. 
T Consensus       144 ~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsr-NrittLp~r~Fk-  218 (873)
T KOG4194|consen  144 ELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSR-NRITTLPQRSFK-  218 (873)
T ss_pred             HHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeeccc-CcccccCHHHhh-
Confidence            67778999999999865 7777655553  579999999987 666655544 6677888999987 566666543221 


Q ss_pred             CceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhc
Q 045938          362 SLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL  441 (681)
Q Consensus       362 ~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l  441 (681)
                      +                     .++|+.|++.. +.++.          ++.+.+..+|+ |+.|.+.+|.+..---..|
T Consensus       219 ~---------------------L~~L~~LdLnr-N~iri----------ve~ltFqgL~S-l~nlklqrN~I~kL~DG~F  265 (873)
T KOG4194|consen  219 R---------------------LPKLESLDLNR-NRIRI----------VEGLTFQGLPS-LQNLKLQRNDISKLDDGAF  265 (873)
T ss_pred             h---------------------cchhhhhhccc-cceee----------ehhhhhcCchh-hhhhhhhhcCcccccCcce
Confidence            1                     23577777665 22222          11112666777 9999999987655444568


Q ss_pred             ccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcce
Q 045938          442 DNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQ  521 (681)
Q Consensus       442 ~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~  521 (681)
                      -.+.++++|+++.|.+...-.+++.++..|+.|+++.|.....-+.++..+++|++|++++|...+.-+..+..+..|++
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~  345 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEE  345 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhh
Confidence            89999999999999998877888899999999999998865555668889999999999999976666668888999999


Q ss_pred             eeecccCCCCCccccCCCCCCCceeeeecCcc----------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccc
Q 045938          522 LTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK----------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPAC  591 (681)
Q Consensus       522 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~  591 (681)
                      |.++.|.....-...|..+++|++|||+.|.+          +..+++|+.|.+.||  .+..+|.-.+      ..++.
T Consensus       346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN--qlk~I~krAf------sgl~~  417 (873)
T KOG4194|consen  346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN--QLKSIPKRAF------SGLEA  417 (873)
T ss_pred             hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc--eeeecchhhh------ccCcc
Confidence            99999986555455688899999999999987          337999999999998  8888988776      68889


Q ss_pred             cceeEecccCCccccc-ccccCCCCCCEEeecC
Q 045938          592 LASLMIGNFPNLERLS-SSIVDLQNLTHLELED  623 (681)
Q Consensus       592 L~~l~l~~~~~l~~l~-~~~~~~~~L~~L~l~~  623 (681)
                      |+.|+++++ .+.++. ..|..+ +|++|.+..
T Consensus       418 LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  418 LEHLDLGDN-AIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cceecCCCC-cceeecccccccc-hhhhhhhcc
Confidence            999999996 566664 467777 899888865

>PLN03210 Resistant to P

Probab=99.88  E-value=1.5e-21  Score=230.65  Aligned_cols=331  Identities=22%  Similarity=0.316  Sum_probs=246.9

Q ss_pred             cCCccEEeeeCCc------CcccCCCCCCCCC-CcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCC
Q 045938          264 SCILEYIDLRDCQ------DLVKLPQSPLSLS-SLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDT  336 (681)
Q Consensus       264 ~~~L~~L~l~~~~------~~~~l~~~~~~l~-~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  336 (681)
                      +++|+.|.+..+.      ....+|..+..++ +|+.|++.+++ ++.+|....+.+|+.|++.++. +..++...  ..
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~~  632 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--HS  632 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcc-cccccccc--cc
Confidence            3677777775432      1123555555543 57888887765 6677766567778888887765 66666655  56


Q ss_pred             CCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhccc
Q 045938          337 NSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEV  416 (681)
Q Consensus       337 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~  416 (681)
                      +++|+.++++++..++.++...                        ..++|++|++++|..+.. ++     ..     +
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~ls------------------------~l~~Le~L~L~~c~~L~~-lp-----~s-----i  677 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPDLS------------------------MATNLETLKLSDCSSLVE-LP-----SS-----I  677 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCccc------------------------cCCcccEEEecCCCCccc-cc-----hh-----h
Confidence            7788888887776666555321                        234688999988887766 22     11     3


Q ss_pred             CCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcc
Q 045938          417 GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT  496 (681)
Q Consensus       417 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~  496 (681)
                      ..++. |+.|++++|..++.+|..+ ++++|+.|++++|.....+|..   ..+|+.|+++++. +..+|... .+++|+
T Consensus       678 ~~L~~-L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~  750 (1153)
T PLN03210        678 QYLNK-LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLD  750 (1153)
T ss_pred             hccCC-CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccc
Confidence            44555 9999999998888877544 7889999999999877766643   4678899998876 56777644 578899


Q ss_pred             eEeecccccccc-------ccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccc------cCCcccEE
Q 045938          497 RLEISYCKRLQV-------LPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIW------KFSSLRQL  563 (681)
Q Consensus       497 ~L~l~~~~~l~~-------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~l~~L~~L  563 (681)
                      +|++.++.....       .+......++|+.|++++|.....+|..++.+++|+.|++++|..+.      ++++|+.|
T Consensus       751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L  830 (1153)
T PLN03210        751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESL  830 (1153)
T ss_pred             cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEE
Confidence            888877542111       11122345789999999999999999999999999999999997633      57899999


Q ss_pred             EEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEE
Q 045938          564 TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQL  642 (681)
Q Consensus       564 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L  642 (681)
                      ++++| ..+..+|.          .+++|+.|++.+ ..++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+
T Consensus       831 ~Ls~c-~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L  898 (1153)
T PLN03210        831 DLSGC-SRLRTFPD----------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV  898 (1153)
T ss_pred             ECCCC-Cccccccc----------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence            99995 45666665          457899999998 489999999999999999999999999999874 457899999


Q ss_pred             EeCCchhHHh
Q 045938          643 YIGGCPLIAE  652 (681)
Q Consensus       643 ~i~~c~~l~~  652 (681)
                      ++++|+.++.
T Consensus       899 ~l~~C~~L~~  908 (1153)
T PLN03210        899 DFSDCGALTE  908 (1153)
T ss_pred             ecCCCccccc
Confidence            9999998875

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=7.3e-24  Score=214.22  Aligned_cols=342  Identities=19%  Similarity=0.247  Sum_probs=213.0

Q ss_pred             cccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCcee
Q 045938          225 NELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVS  304 (681)
Q Consensus       225 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~  304 (681)
                      +..+..+++++-|.+.. .++..+|..     +..+    .+|++|.++.|.. ..+...+..++.|+.+++..|. ++.
T Consensus        25 P~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~-LKn   92 (1255)
T KOG0444|consen   25 PHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNN-LKN   92 (1255)
T ss_pred             chhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccc-ccc
Confidence            34456677777777775 366666655     2222    6677777777655 5555566667777777777655 322


Q ss_pred             --ec-CCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccc
Q 045938          305 --FP-EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRR  381 (681)
Q Consensus       305 --~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  381 (681)
                        +| ++..+..|..||+++|+ +..+|...  ..-.++-.|++++ ++++.+|..-+                      
T Consensus        93 sGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~-N~IetIPn~lf----------------------  146 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSY-NNIETIPNSLF----------------------  146 (1255)
T ss_pred             CCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEccc-CccccCCchHH----------------------
Confidence              33 33346667777777765 66666655  4555666666665 34544442111                      


Q ss_pred             cCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccc
Q 045938          382 YTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKIL  461 (681)
Q Consensus       382 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~  461 (681)
                                    -++++                      |-.|++++| .++.+|+.+..+.+|++|++++|.+.-.-
T Consensus       147 --------------inLtD----------------------LLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ  189 (1255)
T KOG0444|consen  147 --------------INLTD----------------------LLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQ  189 (1255)
T ss_pred             --------------HhhHh----------------------Hhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence                          11111                      455666655 45556666666667777777766654322


Q ss_pred             cCcCcCcccccEEeeccCCC-ceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCC
Q 045938          462 PSGLHNLRQLQEIGIWECEN-LVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLP  540 (681)
Q Consensus       462 ~~~l~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  540 (681)
                      -.-+.++.+|++|.+++.+- +..+|..+..+.+|..+|++.|. +..+|..+..+++|+.|++++|...+ +....+..
T Consensus       190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W  267 (1255)
T KOG0444|consen  190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEW  267 (1255)
T ss_pred             HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceee-eeccHHHH
Confidence            22233455566666665332 23466666666667777776655 45566666666777777777665332 22234555


Q ss_pred             CCCceeeeecCcc------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCC
Q 045938          541 TNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQ  614 (681)
Q Consensus       541 ~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~  614 (681)
                      .+|++|+++.|+.      +.++++|+.|.+.+|...++.+|...       .-+..|+.++..+ ++|+-.|.++..|+
T Consensus       268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI-------GKL~~Levf~aan-N~LElVPEglcRC~  339 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI-------GKLIQLEVFHAAN-NKLELVPEGLCRCV  339 (1255)
T ss_pred             hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch-------hhhhhhHHHHhhc-cccccCchhhhhhH
Confidence            6677777777765      44677777777777777777888776       4666777777776 47777888888888


Q ss_pred             CCCEEeecCCCCCcccCCC-CCcccccEEEeCCchhHHh
Q 045938          615 NLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLIAE  652 (681)
Q Consensus       615 ~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~  652 (681)
                      .|+.|.+++| .+..+|+. .+++-|+.||++.||.+--
T Consensus       340 kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  340 KLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             HHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccC
Confidence            8888888775 67777763 6778888888888887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.85  E-value=4.5e-25  Score=212.17  Aligned_cols=357  Identities=22%  Similarity=0.261  Sum_probs=232.8

Q ss_pred             ccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC
Q 045938          228 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE  307 (681)
Q Consensus       228 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~  307 (681)
                      +..+.+|..+++.+. .++.+++...+         +..|++|+...|-. +.+|+.++.+.+|..|++..|. +..+|.
T Consensus       156 ~~~~~~l~~l~~~~n-~l~~l~~~~i~---------m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe  223 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGN-KLKALPENHIA---------MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNK-IRFLPE  223 (565)
T ss_pred             HHHHHHHHHhhcccc-chhhCCHHHHH---------HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcc-cccCCC
Confidence            356667777777764 56666655322         26677777766544 7888888899999999998765 888888


Q ss_pred             CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCc
Q 045938          308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL  387 (681)
Q Consensus       308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L  387 (681)
                      ...|+.|+++.+..|. ++.+|.... .+++++.+|++.+ ++++++|....                       -..+|
T Consensus       224 f~gcs~L~Elh~g~N~-i~~lpae~~-~~L~~l~vLDLRd-Nklke~Pde~c-----------------------lLrsL  277 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQ-IEMLPAEHL-KHLNSLLVLDLRD-NKLKEVPDEIC-----------------------LLRSL  277 (565)
T ss_pred             CCccHHHHHHHhcccH-HHhhHHHHh-cccccceeeeccc-cccccCchHHH-----------------------Hhhhh
Confidence            8888889999888876 777776653 5788888888887 57776664321                       11136


Q ss_pred             ceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCC---CccEEE-------eecccC
Q 045938          388 EGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNT---SLETIS-------ISECEN  457 (681)
Q Consensus       388 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~---~L~~L~-------ls~~~~  457 (681)
                      ++|++++. .++.      +|..     ++.+ + |+.|-+.||..-+ +...+.+..   -|++|.       ++....
T Consensus       278 ~rLDlSNN-~is~------Lp~s-----Lgnl-h-L~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~  342 (565)
T KOG0472|consen  278 ERLDLSNN-DISS------LPYS-----LGNL-H-LKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEG  342 (565)
T ss_pred             hhhcccCC-cccc------CCcc-----cccc-e-eeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence            66666652 2222      1111     3334 2 6666666664322 211111111   011110       000000


Q ss_pred             c----cccc----CcCcCcccccEEeeccCCCceecCCCCCCCCC---cceEeeccccccccccccCcccCCcceeeecc
Q 045938          458 L----KILP----SGLHNLRQLQEIGIWECENLVSFPQGGLPCAK---LTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE  526 (681)
Q Consensus       458 ~----~~~~----~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~---L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~  526 (681)
                      .    ...+    .........+.|++++-+ ++.+|...+....   .+..+++.|+ +..+|..+..+..+...-+..
T Consensus       343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~ls  420 (565)
T KOG0472|consen  343 GTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLS  420 (565)
T ss_pred             cccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhh
Confidence            0    0001    112335677788888644 5567765443333   7788888877 577888887777766666666


Q ss_pred             cCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEeccc
Q 045938          527 GGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNF  600 (681)
Q Consensus       527 ~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~  600 (681)
                      +...+.+|..++.+++|.-|++++|..      .+.+..|+.|+++.|  .+..+|.-.       -.+..++.+-.++ 
T Consensus       421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N--rFr~lP~~~-------y~lq~lEtllas~-  490 (565)
T KOG0472|consen  421 NNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN--RFRMLPECL-------YELQTLETLLASN-  490 (565)
T ss_pred             cCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccc--ccccchHHH-------hhHHHHHHHHhcc-
Confidence            666777888889999999999999876      567788999999998  777777643       1233444443443 


Q ss_pred             CCcccccc-cccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeCCchhH
Q 045938          601 PNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       601 ~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l  650 (681)
                      ..+..++. ++.++.+|++|++.+| .++.+|.. +.+.+|+.|++.|||.-
T Consensus       491 nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  491 NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCccC
Confidence            57788876 5889999999999886 78888874 88999999999999853

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.83  E-value=1.4e-22  Score=214.49  Aligned_cols=410  Identities=19%  Similarity=0.176  Sum_probs=244.7

Q ss_pred             CcccEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeeccccccccccccc
Q 045938          156 PSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLK  235 (681)
Q Consensus       156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  235 (681)
                      .+|+.|+++++.....+...                         -.+++|+.|.++....-.    . +....++.+|+
T Consensus        45 v~L~~l~lsnn~~~~fp~~i-------------------------t~l~~L~~ln~s~n~i~~----v-p~s~~~~~~l~   94 (1081)
T KOG0618|consen   45 VKLKSLDLSNNQISSFPIQI-------------------------TLLSHLRQLNLSRNYIRS----V-PSSCSNMRNLQ   94 (1081)
T ss_pred             eeeEEeeccccccccCCchh-------------------------hhHHHHhhcccchhhHhh----C-chhhhhhhcch
Confidence            34888888877754433221                         023455555554432111    2 24457788888


Q ss_pred             EEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCce
Q 045938          236 RLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLK  315 (681)
Q Consensus       236 ~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~  315 (681)
                      .+.|.+ ..+..+|++     +..    ..+|++|+++.|.. ..+|..+..+..+..+..++|..+..++...    .+
T Consensus        95 ~lnL~~-n~l~~lP~~-----~~~----lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik  159 (1081)
T KOG0618|consen   95 YLNLKN-NRLQSLPAS-----ISE----LKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IK  159 (1081)
T ss_pred             hheecc-chhhcCchh-----HHh----hhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc----ch
Confidence            888885 467777665     222    27788888888776 6777777777777777777764343333222    44


Q ss_pred             EEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccC
Q 045938          316 KIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRC  395 (681)
Q Consensus       316 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  395 (681)
                      .+++..+.....++...  ..+..  .+++.++. +... ......    .+..-.|....-..-....++++.|+.+++
T Consensus       160 ~~~l~~n~l~~~~~~~i--~~l~~--~ldLr~N~-~~~~-dls~~~----~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n  229 (1081)
T KOG0618|consen  160 KLDLRLNVLGGSFLIDI--YNLTH--QLDLRYNE-MEVL-DLSNLA----NLEVLHCERNQLSELEISGPSLTALYADHN  229 (1081)
T ss_pred             hhhhhhhhcccchhcch--hhhhe--eeecccch-hhhh-hhhhcc----chhhhhhhhcccceEEecCcchheeeeccC
Confidence            55554444333333222  22222  24444421 1100 000000    011111110000000112234556655554


Q ss_pred             CCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEe
Q 045938          396 PSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIG  475 (681)
Q Consensus       396 ~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~  475 (681)
                      +-.+. .             ....|.++++++++.+. ...+|.+++.+.+|+.+++.+|.+. .+|..+....+|+.+.
T Consensus       230 ~l~~~-~-------------~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~  293 (1081)
T KOG0618|consen  230 PLTTL-D-------------VHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS  293 (1081)
T ss_pred             cceee-c-------------cccccccceeeecchhh-hhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence            43321 0             33445667777777764 4445677777777777777777663 3344444445555555


Q ss_pred             eccCCCceecCCCCCCCCCcceEeeccccc------------------------cccccc-cCcccCCcceeeecccCCC
Q 045938          476 IWECENLVSFPQGGLPCAKLTRLEISYCKR------------------------LQVLPK-GLHNLTSLQQLTIGEGGEL  530 (681)
Q Consensus       476 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~------------------------l~~~~~-~l~~l~~L~~L~l~~~~~~  530 (681)
                      +..|. +..+|........|+.|++..|..                        +...|. +-..++.|+.|.+.+|...
T Consensus       294 ~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  294 AAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             hhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence            55444 334444444445555555555432                        122221 1223566889999999988


Q ss_pred             CCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCc
Q 045938          531 PSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNL  603 (681)
Q Consensus       531 ~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l  603 (681)
                      +...+.+.++.+|+.|++++|..       +.+++.|++|+++||  ++..+|...       .....|++|+..++ .|
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN--kL~~Lp~tv-------a~~~~L~tL~ahsN-~l  442 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN--KLTTLPDTV-------ANLGRLHTLRAHSN-QL  442 (1081)
T ss_pred             ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc--hhhhhhHHH-------HhhhhhHHHhhcCC-ce
Confidence            87767799999999999999975       458899999999998  888898766       57788999988884 88


Q ss_pred             ccccccccCCCCCCEEeecCCCCCcccCC-CCCc-ccccEEEeCCchh
Q 045938          604 ERLSSSIVDLQNLTHLELEDCPKLKYFPE-KGLP-SSLLQLYIGGCPL  649 (681)
Q Consensus       604 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~-~~L~~L~i~~c~~  649 (681)
                      ..+| .+.+++.|+.+|++.| .++.+.- ...+ ++|++||++||+.
T Consensus       443 ~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  443 LSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             eech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence            8999 7889999999999987 6666433 2344 8999999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=1.6e-22  Score=204.64  Aligned_cols=189  Identities=21%  Similarity=0.267  Sum_probs=148.4

Q ss_pred             CcEEEEcCCCCc-hhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSEL-ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      |+.|.+++.+.+ ..+|..+..+.+|+.+|+|.|.+. .+|+.+.++++|+.|++++|. ++.+......-.+|++|+++
T Consensus       199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlS  276 (1255)
T KOG0444|consen  199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLS  276 (1255)
T ss_pred             hhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccc
Confidence            777788876654 457888899999999999988765 457778889999999999887 55666655556789999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCC-CCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcC
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGEL-PSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVS  574 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~  574 (681)
                      .|+ +..+|..+..+++|+.|.+.+|... +.+|+.+|.+.+|+++..++|..      +..|++|+.|.+++|  .+..
T Consensus       277 rNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N--rLiT  353 (1255)
T KOG0444|consen  277 RNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN--RLIT  353 (1255)
T ss_pred             cch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc--ceee
Confidence            987 6778999999999999999888754 45788899999999999998886      568899999999887  7778


Q ss_pred             CCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecC
Q 045938          575 FPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELED  623 (681)
Q Consensus       575 l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~  623 (681)
                      +|+..       ..++.|+.|++..+|+|..-|+.-..=++|+.-+|.-
T Consensus       354 LPeaI-------HlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF  395 (1255)
T KOG0444|consen  354 LPEAI-------HLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF  395 (1255)
T ss_pred             chhhh-------hhcCCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence            88877       6788888888888888876665333334555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=6.5e-24  Score=204.29  Aligned_cols=475  Identities=20%  Similarity=0.252  Sum_probs=274.8

Q ss_pred             ccceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938            8 LEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL   86 (681)
Q Consensus         8 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L   86 (681)
                      ++.+.|+.++...+-..+-  .+..|.+|++.+ +.+.++|+ ++.+..++.|+++.+. +..+|...+.      .++|
T Consensus        47 l~~lils~N~l~~l~~dl~--nL~~l~vl~~~~-n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s------~~~l  116 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLK--NLACLTVLNVHD-NKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGS------LISL  116 (565)
T ss_pred             hhhhhhccCchhhccHhhh--cccceeEEEecc-chhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhh------hhhh
Confidence            4445555555443333322  355666666665 35566664 6666666666666654 5555554322      5555


Q ss_pred             ceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCCCC---CCccEEEEccCCCce--eecCCCCcccEE
Q 045938           87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHL---PALEMLVIEGCEELL--VSVSSLPSLCKF  161 (681)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l---~~L~~L~i~~~~~~~--~~~~~l~~L~~L  161 (681)
                      +.++.+.- .+.+...     ++..+-.|+.++..+ +.+. ..|..+   .++..+++.+.....  ...-.+..|+++
T Consensus       117 ~~l~~s~n-~~~el~~-----~i~~~~~l~dl~~~~-N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l  188 (565)
T KOG0472|consen  117 VKLDCSSN-ELKELPD-----SIGRLLDLEDLDATN-NQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL  188 (565)
T ss_pred             hhhhcccc-ceeecCc-----hHHHHhhhhhhhccc-cccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence            55555431 1111111     134455566665555 3333 444332   334444444432111  111125666666


Q ss_pred             EECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecC
Q 045938          162 IIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITS  241 (681)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  241 (681)
                      +...+..                            +++|+.+..++.|...+....+..+ . + -|.++..|+++.+..
T Consensus       189 d~~~N~L----------------------------~tlP~~lg~l~~L~~LyL~~Nki~~-l-P-ef~gcs~L~Elh~g~  237 (565)
T KOG0472|consen  189 DCNSNLL----------------------------ETLPPELGGLESLELLYLRRNKIRF-L-P-EFPGCSLLKELHVGE  237 (565)
T ss_pred             ccchhhh----------------------------hcCChhhcchhhhHHHHhhhccccc-C-C-CCCccHHHHHHHhcc
Confidence            6554432                            3456677888888887777666522 1 2 347788888888876


Q ss_pred             CCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec-CCCCCCCceEEEEe
Q 045938          242 CPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP-EVALPSKLKKIEIR  320 (681)
Q Consensus       242 c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~  320 (681)
                      . +++.+|+.    ....    .+++..|++++|.. +++|+.+..+.+|.+||+++|. +..+| ..+.+ .|+.|-+.
T Consensus       238 N-~i~~lpae----~~~~----L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~le  305 (565)
T KOG0472|consen  238 N-QIEMLPAE----HLKH----LNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALE  305 (565)
T ss_pred             c-HHHhhHHH----Hhcc----cccceeeecccccc-ccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhc
Confidence            4 67766654    2222    37888888888776 8888888888889999998665 77765 44555 78888888


Q ss_pred             cCCCCCcccccccc-CCCCccceeee-ccCCCccccccccCCCCceeEEEecccc-cccccccccCCCCcceeeeccCCC
Q 045938          321 ECDALKSLPEAWMC-DTNSSLEILEI-WICNSLTYIAGVQLPPSLKWTLTVEEGI-QSSSSSRRYTSSLLEGLHISRCPS  397 (681)
Q Consensus       321 ~~~~l~~~~~~~~~-~~~~~L~~L~l-~~c~~l~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~  397 (681)
                      +|+ +..+-..+.. ..-.-|++|.= .-|..+..-.+.          ...... .-..++...+.-+.+.|++++ .+
T Consensus       306 GNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~----------~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~q  373 (565)
T KOG0472|consen  306 GNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG----------TETAMTLPSESFPDIYAIITTKILDVSD-KQ  373 (565)
T ss_pred             CCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc----------ccccCCCCCCcccchhhhhhhhhhcccc-cc
Confidence            877 4433322210 01111222211 011111111000          000000 011112222333466666666 34


Q ss_pred             cccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeec
Q 045938          398 LTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIW  477 (681)
Q Consensus       398 l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~  477 (681)
                      ++. .|...|..+-.        .-+...++++|+ +.++|..+..+..+.+.-+..++..+.+|..+..+++|..|+++
T Consensus       374 lt~-VPdEVfea~~~--------~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~  443 (565)
T KOG0472|consen  374 LTL-VPDEVFEAAKS--------EIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS  443 (565)
T ss_pred             ccc-CCHHHHHHhhh--------cceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence            444 23222211111        126778888884 56677777777777776666677777778888888999999999


Q ss_pred             cCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccc-cCCCCCCCceeeeecCcc---
Q 045938          478 ECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKK---  553 (681)
Q Consensus       478 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~---  553 (681)
                      +|. +.++|..++.+-.|+.++++.|+ .+.+|..+..+..++.+-.++|+ ++.+++ .+.++.+|..||+.+|-+   
T Consensus       444 NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~nNdlq~I  520 (565)
T KOG0472|consen  444 NNL-LNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQNNDLQQI  520 (565)
T ss_pred             cch-hhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCCCchhhC
Confidence            766 67888888888889999999985 56777777666666666555555 444444 377888888888888765   


Q ss_pred             ---cccCCcccEEEEecc
Q 045938          554 ---IWKFSSLRQLTISGC  568 (681)
Q Consensus       554 ---~~~l~~L~~L~l~~~  568 (681)
                         +++|++|++|.+.||
T Consensus       521 Pp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  521 PPILGNMTNLRHLELDGN  538 (565)
T ss_pred             ChhhccccceeEEEecCC
Confidence               678888888888887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-22  Score=215.20  Aligned_cols=271  Identities=21%  Similarity=0.230  Sum_probs=187.7

Q ss_pred             cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec-C
Q 045938          229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP-E  307 (681)
Q Consensus       229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~-~  307 (681)
                      ..-++|+.|....|+..+..+.           -.+.+|++++++.+.. ..+|+++..+.+|+.+.+..|. +..+| .
T Consensus       216 ~~g~~l~~L~a~~n~l~~~~~~-----------p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~-l~~lp~r  282 (1081)
T KOG0618|consen  216 ISGPSLTALYADHNPLTTLDVH-----------PVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNR-LVALPLR  282 (1081)
T ss_pred             ecCcchheeeeccCcceeeccc-----------cccccceeeecchhhh-hcchHHHHhcccceEecccchh-HHhhHHH
Confidence            3456777777777754432221           2447788888888766 7788888888888888888765 55544 3


Q ss_pred             CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCc
Q 045938          308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL  387 (681)
Q Consensus       308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L  387 (681)
                      +....+|++|++..|. ++.+|...  ....+|++|++.. +++..+|...+....                     ..+
T Consensus       283 i~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tLdL~~-N~L~~lp~~~l~v~~---------------------~~l  337 (1081)
T KOG0618|consen  283 ISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTLDLQS-NNLPSLPDNFLAVLN---------------------ASL  337 (1081)
T ss_pred             HhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeeeeehh-ccccccchHHHhhhh---------------------HHH
Confidence            3446788888888877 77777765  5678888888876 566666542111000                     012


Q ss_pred             ceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcC
Q 045938          388 EGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHN  467 (681)
Q Consensus       388 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~  467 (681)
                      +.+..+. ..+.. .+         ..+-..++ .|+.|++.+|...+...+.+.++.+|++|++++|.+.......+.+
T Consensus       338 ~~ln~s~-n~l~~-lp---------~~~e~~~~-~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k  405 (1081)
T KOG0618|consen  338 NTLNVSS-NKLST-LP---------SYEENNHA-ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK  405 (1081)
T ss_pred             HHHhhhh-ccccc-cc---------cccchhhH-HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence            2222222 11111 00         00011222 3899999999888887788999999999999999877555555788


Q ss_pred             cccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCC-CCCcee
Q 045938          468 LRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLP-TNLHRL  546 (681)
Q Consensus       468 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L  546 (681)
                      ++.|+.|++++|. +..+|..+..++.|++|...+|. +..+| .+..++.|+.+|++.|.......+ .... ++|++|
T Consensus       406 le~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyL  481 (1081)
T KOG0618|consen  406 LEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYL  481 (1081)
T ss_pred             hHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhh-hhCCCccccee
Confidence            9999999999987 67888888889999999888877 56777 688899999999998876554333 2333 899999


Q ss_pred             eeecCcc
Q 045938          547 EIIDNKK  553 (681)
Q Consensus       547 ~l~~~~~  553 (681)
                      |+++|.-
T Consensus       482 dlSGN~~  488 (1081)
T KOG0618|consen  482 DLSGNTR  488 (1081)
T ss_pred             eccCCcc
Confidence            9999984

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=2.4e-14  Score=157.49  Aligned_cols=260  Identities=28%  Similarity=0.326  Sum_probs=139.6

Q ss_pred             CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceee
Q 045938          265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILE  344 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  344 (681)
                      ..-..|+++++.. ..+|..+.  ++|+.|++.+|. ++.+|.  .+++|++|++++|. +..+|..     .++|+.|+
T Consensus       201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N~-Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCCc-CCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence            4466788888755 57777664  478888888754 777764  36788888888874 6666642     25677777


Q ss_pred             eccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938          345 IWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK  424 (681)
Q Consensus       345 l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~  424 (681)
                      +.++ .++.++.  .+                        +.|+.|+++++ +++.               +...|++|+
T Consensus       269 Ls~N-~L~~Lp~--lp------------------------~~L~~L~Ls~N-~Lt~---------------LP~~p~~L~  305 (788)
T PRK15387        269 IFSN-PLTHLPA--LP------------------------SGLCKLWIFGN-QLTS---------------LPVLPPGLQ  305 (788)
T ss_pred             ccCC-chhhhhh--ch------------------------hhcCEEECcCC-cccc---------------ccccccccc
Confidence            7663 3433331  00                        12444444442 2222               111222355


Q ss_pred             EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938          425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK  504 (681)
Q Consensus       425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~  504 (681)
                      .|++++|.+.. +|.   -..+|+.|++++|.+.. +|..   ..+|+.|++++|. +..+|..   .++|+.|++++|.
T Consensus       306 ~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~  373 (788)
T PRK15387        306 ELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNR  373 (788)
T ss_pred             eeECCCCcccc-CCC---CcccccccccccCcccc-cccc---ccccceEecCCCc-cCCCCCC---Ccccceehhhccc
Confidence            55555553322 221   11234444454444432 2211   1244455554443 2233321   1234444444443


Q ss_pred             ccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccccc
Q 045938          505 RLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRT  584 (681)
Q Consensus       505 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~  584 (681)
                       +..+|..   ..+|+.|++++|... .+|.                    ..++|+.|++++|  .+..+|.       
T Consensus       374 -L~~LP~l---~~~L~~LdLs~N~Lt-~LP~--------------------l~s~L~~LdLS~N--~LssIP~-------  419 (788)
T PRK15387        374 -LTSLPAL---PSGLKELIVSGNRLT-SLPV--------------------LPSELKELMVSGN--RLTSLPM-------  419 (788)
T ss_pred             -cccCccc---ccccceEEecCCccc-CCCC--------------------cccCCCEEEccCC--cCCCCCc-------
Confidence             2223321   123444444444322 1221                    2346777777776  5666664       


Q ss_pred             CCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcc
Q 045938          585 TLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKY  629 (681)
Q Consensus       585 ~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~  629 (681)
                         .+.+|+.|++.++ .++.+|..+..+++|+.|++++|+.-..
T Consensus       420 ---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        420 ---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             ---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence               3456788888884 7889999888999999999999865433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.49  E-value=2.4e-13  Score=149.75  Aligned_cols=98  Identities=28%  Similarity=0.309  Sum_probs=61.9

Q ss_pred             ccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCC
Q 045938          232 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALP  311 (681)
Q Consensus       232 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~  311 (681)
                      .+-..|+++++ .++++|..           .+++|+.|++.+|.. ..+|.   .+++|++|++++| .++.+|.  .+
T Consensus       201 ~~~~~LdLs~~-~LtsLP~~-----------l~~~L~~L~L~~N~L-t~LP~---lp~~Lk~LdLs~N-~LtsLP~--lp  261 (788)
T PRK15387        201 NGNAVLNVGES-GLTTLPDC-----------LPAHITTLVIPDNNL-TSLPA---LPPELRTLEVSGN-QLTSLPV--LP  261 (788)
T ss_pred             CCCcEEEcCCC-CCCcCCcc-----------hhcCCCEEEccCCcC-CCCCC---CCCCCcEEEecCC-ccCcccC--cc
Confidence            34556777776 66666654           225677888877655 55665   3567788888766 4666664  35


Q ss_pred             CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccc
Q 045938          312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIA  355 (681)
Q Consensus       312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~  355 (681)
                      ++|++|++++|. +..+|..     ..+|+.|+++++ .++.++
T Consensus       262 ~sL~~L~Ls~N~-L~~Lp~l-----p~~L~~L~Ls~N-~Lt~LP  298 (788)
T PRK15387        262 PGLLELSIFSNP-LTHLPAL-----PSGLCKLWIFGN-QLTSLP  298 (788)
T ss_pred             cccceeeccCCc-hhhhhhc-----hhhcCEEECcCC-cccccc
Confidence            677888887775 5555542     245777777663 455544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.40  E-value=6.6e-13  Score=147.22  Aligned_cols=160  Identities=25%  Similarity=0.333  Sum_probs=82.2

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      +|+.|++++|... .+|..+.  ++|+.|++++|.+.. +|..+.  ++|+.|++++|. +..+|....  ++|+.|+++
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls  333 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLEAG  333 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCc-cccCCcccc--ccceecccc
Confidence            4777777766433 4444332  467777777776553 333332  356666666655 334443322  466666666


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIR  581 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~  581 (681)
                      +|.. ..+|..+  .++|+.|++++|... .+|..+  ++                 +|+.|+|++|  .+..+|..   
T Consensus       334 ~N~L-t~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~-----------------~L~~LdLs~N--~Lt~LP~~---  385 (754)
T PRK15370        334 ENAL-TSLPASL--PPELQVLDVSKNQIT-VLPETL--PP-----------------TITTLDVSRN--ALTNLPEN---  385 (754)
T ss_pred             CCcc-ccCChhh--cCcccEEECCCCCCC-cCChhh--cC-----------------CcCEEECCCC--cCCCCCHh---
Confidence            6653 3355433  246666666666432 333321  23                 4444444444  34444442   


Q ss_pred             cccCCCcccccceeEecccCCccccccccc----CCCCCCEEeecCCC
Q 045938          582 LRTTLPLPACLASLMIGNFPNLERLSSSIV----DLQNLTHLELEDCP  625 (681)
Q Consensus       582 ~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~----~~~~L~~L~l~~c~  625 (681)
                            .+..|+.|+++++ ++..+|..+.    .++++..|++.+|+
T Consensus       386 ------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        386 ------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence                  2234555556553 5555554332    34666677777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.32  E-value=3.1e-12  Score=141.97  Aligned_cols=238  Identities=20%  Similarity=0.269  Sum_probs=154.0

Q ss_pred             EEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCC
Q 045938          366 TLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNT  445 (681)
Q Consensus       366 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~  445 (681)
                      .+.+.+. .+..++... .++++.|+++++ +++. ++     .        .++.+|++|++++|.+ ..+|..+.  +
T Consensus       182 ~L~L~~~-~LtsLP~~I-p~~L~~L~Ls~N-~Lts-LP-----~--------~l~~nL~~L~Ls~N~L-tsLP~~l~--~  241 (754)
T PRK15370        182 ELRLKIL-GLTTIPACI-PEQITTLILDNN-ELKS-LP-----E--------NLQGNIKTLYANSNQL-TSIPATLP--D  241 (754)
T ss_pred             EEEeCCC-CcCcCCccc-ccCCcEEEecCC-CCCc-CC-----h--------hhccCCCEEECCCCcc-ccCChhhh--c
Confidence            4444443 333444322 246777877763 4444 22     1        1123588888887754 34554332  4


Q ss_pred             CccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeec
Q 045938          446 SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIG  525 (681)
Q Consensus       446 ~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~  525 (681)
                      +|+.|++++|.+. .+|..+.  .+|+.|++++|. +..+|..+.  ++|+.|++++|. +..+|..+.  ++|+.|+++
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQ  312 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhc
Confidence            6888888888766 4455543  478888888665 556766443  478888888876 445655432  468888888


Q ss_pred             ccCCCCCccccCCCCCCCceeeeecCcccc----cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccC
Q 045938          526 EGGELPSLEEDDGLPTNLHRLEIIDNKKIW----KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFP  601 (681)
Q Consensus       526 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~  601 (681)
                      +|... .+|..  .+++|+.|++++|..-.    -.++|+.|++++|  .+..+|..         .+++|+.|+++++ 
T Consensus       313 ~N~Lt-~LP~~--l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N--~L~~LP~~---------lp~~L~~LdLs~N-  377 (754)
T PRK15370        313 SNSLT-ALPET--LPPGLKTLEAGENALTSLPASLPPELQVLDVSKN--QITVLPET---------LPPTITTLDVSRN-  377 (754)
T ss_pred             CCccc-cCCcc--ccccceeccccCCccccCChhhcCcccEEECCCC--CCCcCChh---------hcCCcCEEECCCC-
Confidence            87644 34432  34688888888887511    2358888999887  56667752         4568889999886 


Q ss_pred             CcccccccccCCCCCCEEeecCCCCCcccCCC-----CCcccccEEEeCCchhH
Q 045938          602 NLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-----GLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       602 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~~l  650 (681)
                      .+..+|..+.  ++|+.|++++| ++..+|..     +..+.+..|++.+||.-
T Consensus       378 ~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        378 ALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            6778887654  47888899887 67777752     22477889999998853

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.30  E-value=4.3e-14  Score=138.13  Aligned_cols=283  Identities=19%  Similarity=0.245  Sum_probs=173.7

Q ss_pred             ceeEEEEeecCCCCCCC--C-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCcc
Q 045938           32 KLVTLKFEYCGMCPTLP--S-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQG  108 (681)
Q Consensus        32 ~L~~L~l~~c~~l~~l~--~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  108 (681)
                      .||.|.+.||....+-+  . ....|+.++|.+.+|..+++..-.-.    ...+++|++|.+..|+.+++......   
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl----a~~C~~l~~l~L~~c~~iT~~~Lk~l---  211 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL----ARYCRKLRHLNLHSCSSITDVSLKYL---  211 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH----HHhcchhhhhhhcccchhHHHHHHHH---
Confidence            68999999997766655  2 56689999999999986665432211    23489999999999998887655433   


Q ss_pred             ccccCCcceEeeccCccccc----cCCCCCCCccEEEEccCCCcee-----ecCCCCcccEEEECCCCCceeeccccccC
Q 045938          109 VERFPKLRELHILRCSKLKG----TFPEHLPALEMLVIEGCEELLV-----SVSSLPSLCKFIIGGCKKIVWESATGHLG  179 (681)
Q Consensus       109 ~~~~~~L~~L~l~~c~~l~~----~~~~~l~~L~~L~i~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  179 (681)
                      ...|++|++|+++.|+.+++    .+.++...++.+..+||.....     .-...+-+.++++..|..++.++....  
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i--  289 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI--  289 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHH--
Confidence            56799999999999998886    4445667788887778876542     222355566777777776665542111  


Q ss_pred             CCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHh
Q 045938          180 SQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQ  259 (681)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~  259 (681)
                                          ...+..|+.|...+|....+  ........+.++|+.+.++.|..++.       ..+..
T Consensus       290 --------------------~~~c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd-------~~ft~  340 (483)
T KOG4341|consen  290 --------------------ACGCHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSD-------RGFTM  340 (483)
T ss_pred             --------------------hhhhhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhh-------hhhhh
Confidence                                11245566666666665554  12223344566777777777665544       33444


Q ss_pred             hhhccCCccEEeeeCCcCccc--CCCCCCCCCCcceEEEeCCCCceeec-----C-CCCCCCceEEEEecCCCCCccccc
Q 045938          260 LCQLSCILEYIDLRDCQDLVK--LPQSPLSLSSLREIEIYGCSSLVSFP-----E-VALPSKLKKIEIRECDALKSLPEA  331 (681)
Q Consensus       260 l~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~L~~~~~l~~~~-----~-~~~~~~L~~L~l~~~~~l~~~~~~  331 (681)
                      +...++.|+.+++.+|....+  +...-.+++.|+.+.++.|..+++..     . ......|..+.+++|+.+.+....
T Consensus       341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence            445566666666666655332  22222356666666666666555431     1 112455666666666655442222


Q ss_pred             cccCCCCccceeeeccCCCccc
Q 045938          332 WMCDTNSSLEILEIWICNSLTY  353 (681)
Q Consensus       332 ~~~~~~~~L~~L~l~~c~~l~~  353 (681)
                      .. ..+++|+.+++.+|..++.
T Consensus       421 ~l-~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  421 HL-SICRNLERIELIDCQDVTK  441 (483)
T ss_pred             HH-hhCcccceeeeechhhhhh
Confidence            11 4556666666666665554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.26  E-value=2.5e-13  Score=131.80  Aligned_cols=89  Identities=17%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             HhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccC
Q 045938          439 ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLT  517 (681)
Q Consensus       439 ~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~  517 (681)
                      .++..+++|++|++++|.+...-+.+|..+..++.|.+..|+ +..+.. .+..+..|+.|++.+|+.+...|..+..+.
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            568888999999999988888778888888889999888877 444444 344567888899999888777787888888


Q ss_pred             CcceeeecccC
Q 045938          518 SLQQLTIGEGG  528 (681)
Q Consensus       518 ~L~~L~l~~~~  528 (681)
                      +|.+|++-+|+
T Consensus       347 ~l~~l~l~~Np  357 (498)
T KOG4237|consen  347 SLSTLNLLSNP  357 (498)
T ss_pred             eeeeeehccCc
Confidence            88888887765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.24  E-value=2.5e-13  Score=132.93  Aligned_cols=308  Identities=20%  Similarity=0.274  Sum_probs=204.1

Q ss_pred             CcccEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeeccccccccccccc
Q 045938          156 PSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLK  235 (681)
Q Consensus       156 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  235 (681)
                      ..||+|++.+|....+...                      .+....+|++++|.+.+|..+++  ....++..++++|+
T Consensus       138 g~lk~LSlrG~r~v~~ssl----------------------rt~~~~CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~  193 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSL----------------------RTFASNCPNIEHLALYGCKKITD--SSLLSLARYCRKLR  193 (483)
T ss_pred             cccccccccccccCCcchh----------------------hHHhhhCCchhhhhhhcceeccH--HHHHHHHHhcchhh
Confidence            3588999998887665432                      12234579999999999997776  23344567899999


Q ss_pred             EEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc--CCCCCCCCCCcceEEEeCCCCceeec---CCCC
Q 045938          236 RLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK--LPQSPLSLSSLREIEIYGCSSLVSFP---EVAL  310 (681)
Q Consensus       236 ~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--l~~~~~~l~~L~~L~L~~~~~l~~~~---~~~~  310 (681)
                      ++++..|..+++       ..++.+...+++|++|+++.|+.+..  +-.....+..++.+...||.....-.   ..+.
T Consensus       194 ~l~L~~c~~iT~-------~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~  266 (483)
T KOG4341|consen  194 HLNLHSCSSITD-------VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY  266 (483)
T ss_pred             hhhhcccchhHH-------HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence            999999999887       45666778899999999999987654  22234466778888888887554311   1223


Q ss_pred             CCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCccee
Q 045938          311 PSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGL  390 (681)
Q Consensus       311 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L  390 (681)
                      +.-+.++++..|..+++......+..+..|+.+..++|..+.+.+-..+.                     ..+++|+.+
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg---------------------~~~~~L~~l  325 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG---------------------QHCHNLQVL  325 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh---------------------cCCCceEEE
Confidence            55677778888887777654444466788899999888877664432211                     123468888


Q ss_pred             eeccCCCcccccccCCcchhhhhcccC-CCCCCCcEEEEcCCCCchh--HHHhcccCCCccEEEeecccCcccc-----c
Q 045938          391 HISRCPSLTCIFSKNELPATLESLEVG-NLPPSLKSLDVWSCSELES--IAERLDNNTSLETISISECENLKIL-----P  462 (681)
Q Consensus       391 ~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~p~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~ls~~~~~~~~-----~  462 (681)
                      .++.|..+++. .       +..  ++ ..++ |+.+++.+|....+  +...-.+++.|+++.+++|..+...     .
T Consensus       326 ~l~~c~~fsd~-~-------ft~--l~rn~~~-Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~  394 (483)
T KOG4341|consen  326 ELSGCQQFSDR-G-------FTM--LGRNCPH-LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS  394 (483)
T ss_pred             eccccchhhhh-h-------hhh--hhcCChh-hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence            88888877761 1       111  22 2334 88899888865444  3334467888999999888765432     2


Q ss_pred             CcCcCcccccEEeeccCCCceec-CCCCCCCCCcceEeeccccccccccc--cCcccCCcceeeecc
Q 045938          463 SGLHNLRQLQEIGIWECENLVSF-PQGGLPCAKLTRLEISYCKRLQVLPK--GLHNLTSLQQLTIGE  526 (681)
Q Consensus       463 ~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~l~~  526 (681)
                      ..-.++..|+.+.+++|+.+.+- -.-...|++|+.+++.+|.....-+.  .-.++|++++..+.+
T Consensus       395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA  461 (483)
T ss_pred             hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence            22234677888888888876432 12345577888888888775433222  234566666665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.22  E-value=3.1e-13  Score=115.95  Aligned_cols=142  Identities=25%  Similarity=0.373  Sum_probs=97.3

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      +++|.+++| .+..+|+.++.+.+|++|++++|.+. .+|..++++++|+.|+++-+. +..+|.+++++|.|+.||+.+
T Consensus        35 ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccc
Confidence            777888887 44556777888888888888877665 456677888888888888655 556788888888888888887


Q ss_pred             cccc-ccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEecc
Q 045938          503 CKRL-QVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGC  568 (681)
Q Consensus       503 ~~~l-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~  568 (681)
                      |+.. ..+|..+..++.|+.|.+++|. .+.+|+.++.+++|+.|.+.+|..      ++.++.|++|++++|
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence            7654 3467777778888888888775 344555566666666555555543      234444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.21  E-value=5.5e-13  Score=114.49  Aligned_cols=154  Identities=23%  Similarity=0.347  Sum_probs=115.8

Q ss_pred             CcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCc
Q 045938          465 LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLH  544 (681)
Q Consensus       465 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  544 (681)
                      +-.+.+...|.+++|. +..+|.++..+.+|+.|.+++|+ +..+|.+++.+++|+.|+++-|. +...|..||.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence            3456778888888877 56778788888889999998877 57788888899999999998776 456677788888888


Q ss_pred             eeeeecCcc--------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCC
Q 045938          545 RLEIIDNKK--------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNL  616 (681)
Q Consensus       545 ~L~l~~~~~--------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L  616 (681)
                      .||+..|+.        ++.++.|+-|++++|  .++.+|.+.       .-+++|+-|.+.+. .+-++|..+..++.|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dn--dfe~lp~dv-------g~lt~lqil~lrdn-dll~lpkeig~lt~l  175 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDN--DFEILPPDV-------GKLTNLQILSLRDN-DLLSLPKEIGDLTRL  175 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCC--CcccCChhh-------hhhcceeEEeeccC-chhhCcHHHHHHHHH
Confidence            888888765        345667777777776  566677665       45666666666663 666777777777788


Q ss_pred             CEEeecCCCCCcccCC
Q 045938          617 THLELEDCPKLKYFPE  632 (681)
Q Consensus       617 ~~L~l~~c~~l~~l~~  632 (681)
                      +.|+|-+| .++.+|.
T Consensus       176 relhiqgn-rl~vlpp  190 (264)
T KOG0617|consen  176 RELHIQGN-RLTVLPP  190 (264)
T ss_pred             HHHhcccc-eeeecCh
Confidence            88887775 6666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.20  E-value=2.5e-12  Score=132.25  Aligned_cols=146  Identities=21%  Similarity=0.159  Sum_probs=86.5

Q ss_pred             CcEEEEcCCCCc------hhHHHhcccCCCccEEEeecccCcccccCcCcCccc---ccEEeeccCCCce----ecCCCC
Q 045938          423 LKSLDVWSCSEL------ESIAERLDNNTSLETISISECENLKILPSGLHNLRQ---LQEIGIWECENLV----SFPQGG  489 (681)
Q Consensus       423 L~~L~l~~~~~~------~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~---L~~L~l~~~~~l~----~l~~~~  489 (681)
                      +++++++++...      ..++..+..+++|+.|++++|.+....+..+..+.+   |++|++++|....    .+...+
T Consensus        53 l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l  132 (319)
T cd00116          53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL  132 (319)
T ss_pred             ceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH
Confidence            777777776544      223445666778888888877776444444433333   7888887776331    112223


Q ss_pred             CCC-CCcceEeeccccccc----cccccCcccCCcceeeecccCCCCC----ccccCCCCCCCceeeeecCcc-------
Q 045938          490 LPC-AKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELPS----LEEDDGLPTNLHRLEIIDNKK-------  553 (681)
Q Consensus       490 ~~~-~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~-------  553 (681)
                      ..+ ++|++|++++|....    .++..+..+++|++|++++|...+.    ++..+...++|++|++++|..       
T Consensus       133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  212 (319)
T cd00116         133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA  212 (319)
T ss_pred             HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH
Confidence            334 677888888777542    2333445566777888877765432    222234456777777777764       


Q ss_pred             ----cccCCcccEEEEecc
Q 045938          554 ----IWKFSSLRQLTISGC  568 (681)
Q Consensus       554 ----~~~l~~L~~L~l~~~  568 (681)
                          +..+++|++|++++|
T Consensus       213 l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         213 LAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHhcccCCCCEEecCCC
Confidence                225666777777775

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.19  E-value=1.4e-12  Score=126.73  Aligned_cols=225  Identities=19%  Similarity=0.189  Sum_probs=152.2

Q ss_pred             cCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCC
Q 045938          416 VGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAK  494 (681)
Q Consensus       416 ~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~  494 (681)
                      ...+|....++++..|.+....+..|..+++|+.||+++|.+...-|.+|.++++|.+|.+.++..++++|.+ +..+..
T Consensus        62 P~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   62 PANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             cccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            4556777888999988776666678889999999999999888888888888888888888886667777663 234444


Q ss_pred             cceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc---------------------
Q 045938          495 LTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK---------------------  553 (681)
Q Consensus       495 L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------  553 (681)
                      ++.|.+.-|.........+..+++|..|.+.+|.....--..+..+.+++.+.+..|..                     
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            55554444443222233344444444444444432111111233334444444443330                     


Q ss_pred             ------------------------------------------------cccCCcccEEEEeccCCCCcCCCccccccccC
Q 045938          554 ------------------------------------------------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTT  585 (681)
Q Consensus       554 ------------------------------------------------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~  585 (681)
                                                                      +.++++|++|++++|  .+..+.+.+|     
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--~i~~i~~~aF-----  294 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--KITRIEDGAF-----  294 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC--ccchhhhhhh-----
Confidence                                                            347899999999998  7777777665     


Q ss_pred             CCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCCC--cccccEEEeCCchhH
Q 045938          586 LPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKGL--PSSLLQLYIGGCPLI  650 (681)
Q Consensus       586 ~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l  650 (681)
                       .....+++|++.++ +++.+.. -|..+..|+.|++.+| +++.+....+  +.+|.+|++-.||.-
T Consensus       295 -e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  295 -EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             -cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCccc
Confidence             46667888999984 7888876 4567999999999997 6777665443  678999999888753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.16  E-value=3.3e-12  Score=131.36  Aligned_cols=132  Identities=17%  Similarity=0.094  Sum_probs=68.6

Q ss_pred             CCcEEEEcCCCCch----hHHHhcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCce----ecCCCC
Q 045938          422 SLKSLDVWSCSELE----SIAERLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENLV----SFPQGG  489 (681)
Q Consensus       422 ~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~----~l~~~~  489 (681)
                      +|++|++++|....    .+...+..+++|++|++++|.+.+.    ++..+...++|++|++++|....    .+...+
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence            47777777776552    2334455666777777777766532    22233344577777777665321    122233


Q ss_pred             CCCCCcceEeeccccccccccccCc-----ccCCcceeeecccCCCC----CccccCCCCCCCceeeeecCcc
Q 045938          490 LPCAKLTRLEISYCKRLQVLPKGLH-----NLTSLQQLTIGEGGELP----SLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       490 ~~~~~L~~L~l~~~~~l~~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      ..+++|+.|++++|.........+.     ..+.|+.|++++|....    .+...+..+++|+++++++|..
T Consensus       218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            4456677777777654321111111     13566666666665431    1222233345555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1.9e-09  Score=121.85  Aligned_cols=107  Identities=22%  Similarity=0.302  Sum_probs=68.2

Q ss_pred             CCCcceEeecccCC-ceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC
Q 045938          203 IPKLEELEINDMKE-QTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL  281 (681)
Q Consensus       203 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l  281 (681)
                      .+.|++|-+.+... ...   .+.+++..++.|++|++++|..+..+|..     +..+    -+|++|++++... ..+
T Consensus       544 ~~~L~tLll~~n~~~l~~---is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~I-~~L  610 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLE---ISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTGI-SHL  610 (889)
T ss_pred             CCccceEEEeecchhhhh---cCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCCc-ccc
Confidence            34566666665432 222   44455677777777777777777776665     3333    6677777777655 677


Q ss_pred             CCCCCCCCCcceEEEeCCCCceeecCCCC-CCCceEEEEecC
Q 045938          282 PQSPLSLSSLREIEIYGCSSLVSFPEVAL-PSKLKKIEIREC  322 (681)
Q Consensus       282 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~-~~~L~~L~l~~~  322 (681)
                      |.+++++..|.+|++..+..+..++.... +++||+|.+...
T Consensus       611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             chHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            77777777777777776666655544444 677777777653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.83  E-value=1.8e-09  Score=122.13  Aligned_cols=108  Identities=22%  Similarity=0.253  Sum_probs=78.7

Q ss_pred             cccccccEEeecCCCC-ccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC
Q 045938          229 QDICSLKRLTITSCPK-LQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE  307 (681)
Q Consensus       229 ~~~~~L~~L~l~~c~~-l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~  307 (681)
                      ..++.|++|-+.+... +..++...|        ..+|.|++|++++|..+..+|..++.+-+|++|+++++. +..+|.
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff--------~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~  612 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFF--------RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPS  612 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHH--------hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccch
Confidence            3455788888877542 444433321        334889999999988888899999999999999998754 777763


Q ss_pred             -CCCCCCceEEEEecCCCCCccccccccCCCCccceeeecc
Q 045938          308 -VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI  347 (681)
Q Consensus       308 -~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~  347 (681)
                       +..+.+|.+|++..+..+..++...  ..+++|++|.+..
T Consensus       613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  613 GLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR  651 (889)
T ss_pred             HHHHHHhhheeccccccccccccchh--hhcccccEEEeec
Confidence             4557888888888888777775553  4588888888865

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2e-09  Score=106.53  Aligned_cols=183  Identities=16%  Similarity=0.130  Sum_probs=95.3

Q ss_pred             hcccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccc-cccccCcc
Q 045938          440 RLDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQ-VLPKGLHN  515 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~-~~~~~l~~  515 (681)
                      ....|++++.||++.|-+...  +......+|+|+.|+++.|....-... ....++.|+.|.+++|.... .+...+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            344555666666655544321  112233456666666665542211000 11234566666666665431 22223345


Q ss_pred             cCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEeccCCCCcCCCccccccccCCC
Q 045938          516 LTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLP  587 (681)
Q Consensus       516 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~  587 (681)
                      +|+|+.|++.+|............++.|++|||++|+.        ++.+|.|+.|+++.|  .+.++..-.+.+.....
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t--gi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST--GIASIAEPDVESLDKTH  298 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc--CcchhcCCCccchhhhc
Confidence            56666666666643322222244566667777776665        346777777777766  44443333333333445


Q ss_pred             cccccceeEecccCCcccccc--cccCCCCCCEEeecCCC
Q 045938          588 LPACLASLMIGNFPNLERLSS--SIVDLQNLTHLELEDCP  625 (681)
Q Consensus       588 ~~~~L~~l~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~  625 (681)
                      .+++|+.|.+..+ ++..++.  .+..+++|+.|.+..+.
T Consensus       299 ~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  299 TFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccceeeecccC-ccccccccchhhccchhhhhhccccc
Confidence            6677777777764 4444443  44556777777776653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=3.4e-09  Score=104.96  Aligned_cols=201  Identities=14%  Similarity=0.090  Sum_probs=105.7

Q ss_pred             hcccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCce--ecCCCCCCCCCcceEeeccccccccccc-cCcc
Q 045938          440 RLDNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLV--SFPQGGLPCAKLTRLEISYCKRLQVLPK-GLHN  515 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~  515 (681)
                      .-.++.+|+++.+.++......- +-...+++++.|+++.|-...  .+-.....+|+|+.|.++.|....-... .-..
T Consensus       116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            34566777777776665432111 234457777777777664221  2222344567777777777664322211 1124


Q ss_pred             cCCcceeeecccCCCC-CccccCCCCCCCceeeeecCcccc-------cCCcccEEEEeccCCCCcCCCccccccccCCC
Q 045938          516 LTSLQQLTIGEGGELP-SLEEDDGLPTNLHRLEIIDNKKIW-------KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLP  587 (681)
Q Consensus       516 l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~-------~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~  587 (681)
                      +++|+.|.+++|.... ++......+|+|+.|+++.|..+.       .+..|++|+|++|  .+.+++..     ....
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N--~li~~~~~-----~~~~  268 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN--NLIDFDQG-----YKVG  268 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC--cccccccc-----cccc
Confidence            5677777777776542 233334556777777777764311       3556777777766  33333321     1123


Q ss_pred             cccccceeEecccCCcccc--ccc-----ccCCCCCCEEeecCCCCCcccCC---CCCcccccEEEeCCchh
Q 045938          588 LPACLASLMIGNFPNLERL--SSS-----IVDLQNLTHLELEDCPKLKYFPE---KGLPSSLLQLYIGGCPL  649 (681)
Q Consensus       588 ~~~~L~~l~l~~~~~l~~l--~~~-----~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~~  649 (681)
                      .+++|+.|.+..+ .+.++  |+.     ...||+|+.|++..|+ +...+.   ...+++|+.|.+-.++.
T Consensus       269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhcccccc
Confidence            5556666655553 33322  221     3456667777776653 333332   23455566665555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.41  E-value=1.1e-07  Score=86.00  Aligned_cols=77  Identities=25%  Similarity=0.322  Sum_probs=14.9

Q ss_pred             CcEEEEcCCCCchhHHHhcc-cCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCC-CCCCCcceEee
Q 045938          423 LKSLDVWSCSELESIAERLD-NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGG-LPCAKLTRLEI  500 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l  500 (681)
                      +++|++.++.+.. + +.++ .+.+|++|++++|.+...  +.+..+++|++|++++|. +.++..++ ..+|+|++|++
T Consensus        21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEEC
Confidence            5555555554322 1 2233 344555555555554431  223444555555555444 22232211 12444555555


Q ss_pred             cccc
Q 045938          501 SYCK  504 (681)
Q Consensus       501 ~~~~  504 (681)
                      ++|.
T Consensus        96 ~~N~   99 (175)
T PF14580_consen   96 SNNK   99 (175)
T ss_dssp             TTS-
T ss_pred             cCCc
Confidence            4444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.41  E-value=1.5e-07  Score=88.85  Aligned_cols=124  Identities=22%  Similarity=0.191  Sum_probs=69.0

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |+++++++|.+ +.+-+...-.|+++.|++++|.+..  .+.+..+++|..|++++|. +..+...-..+.+++.|.+++
T Consensus       286 LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccch-hhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh
Confidence            77777777743 3343445556777777777776654  2335667777777777655 333332223455677777777


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCC-ccccCCCCCCCceeeeecCc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPS-LEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~  552 (681)
                      |. +..+ .+++.+-+|..|++++|+.... -...+|.+|-|+.+.+.+|.
T Consensus       362 N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  362 NK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            65 2222 3455666666777766653221 11224555555555554444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.41  E-value=1.5e-08  Score=103.70  Aligned_cols=189  Identities=24%  Similarity=0.279  Sum_probs=120.3

Q ss_pred             cEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccc
Q 045938          424 KSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYC  503 (681)
Q Consensus       424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  503 (681)
                      ...+++.|++ ..+|..+..+..|+.+.++.|.+. .+|..+.++..|..++++.|+ +..+|..++.+| |+.|-+++|
T Consensus        78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC
Confidence            3445555533 345555566666666666666554 235556666666666666655 445666666553 666666665


Q ss_pred             cccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccccc
Q 045938          504 KRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLR  583 (681)
Q Consensus       504 ~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~  583 (681)
                      + +..+|..++....|..|+.+.|... .+|+.++                 .+.+|+.|++..|  .+..+|.+.    
T Consensus       154 k-l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~-----------------~l~slr~l~vrRn--~l~~lp~El----  208 (722)
T KOG0532|consen  154 K-LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-----------------YLTSLRDLNVRRN--HLEDLPEEL----  208 (722)
T ss_pred             c-cccCCcccccchhHHHhhhhhhhhh-hchHHhh-----------------hHHHHHHHHHhhh--hhhhCCHHH----
Confidence            5 4556666666666666666666533 3333344                 4556666666665  566677665    


Q ss_pred             cCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC----CCCcccccEEEeCCc
Q 045938          584 TTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE----KGLPSSLLQLYIGGC  647 (681)
Q Consensus       584 ~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~i~~c  647 (681)
                          ..-.|.+|+++. +++..||..|.++..|++|-+++|| +++=|.    .+...--|+|+++-|
T Consensus       209 ----~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  209 ----CSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ----hCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence                233477777775 5899999999999999999999986 666554    244556688888888

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.34  E-value=2e-06  Score=87.45  Aligned_cols=75  Identities=28%  Similarity=0.504  Sum_probs=46.7

Q ss_pred             cccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcc
Q 045938          441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ  520 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~  520 (681)
                      +..+.+++.|++++|.+. .+|. +  -++|++|.+++|..+..+|..+  .++|+.|++++|..+..+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            445677888888887433 3442 1  2358888888777776666533  24778888887765555543      455


Q ss_pred             eeeeccc
Q 045938          521 QLTIGEG  527 (681)
Q Consensus       521 ~L~l~~~  527 (681)
                      .|++..+
T Consensus       116 ~L~L~~n  122 (426)
T PRK15386        116 SLEIKGS  122 (426)
T ss_pred             eEEeCCC
Confidence            5666543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.33  E-value=2.5e-08  Score=96.26  Aligned_cols=221  Identities=18%  Similarity=0.163  Sum_probs=114.5

Q ss_pred             CcEEEEcCCCCchh----HHHhcccCCCccEEEeecccC---ccccc-------CcCcCcccccEEeeccCCCceecC--
Q 045938          423 LKSLDVWSCSELES----IAERLDNNTSLETISISECEN---LKILP-------SGLHNLRQLQEIGIWECENLVSFP--  486 (681)
Q Consensus       423 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~ls~~~~---~~~~~-------~~l~~l~~L~~L~l~~~~~l~~l~--  486 (681)
                      ++.+++++|.+-..    +...+.+.++|+..++++--.   ...+|       ..+..+|+|+++++++|-.-...+  
T Consensus        32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~  111 (382)
T KOG1909|consen   32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG  111 (382)
T ss_pred             eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence            66666666654333    234455555666665554211   01111       122334566666666554222111  


Q ss_pred             --CCCCCCCCcceEeeccccccccc-------------cccCcccCCcceeeecccCCCCC----ccccCCCCCCCceee
Q 045938          487 --QGGLPCAKLTRLEISYCKRLQVL-------------PKGLHNLTSLQQLTIGEGGELPS----LEEDDGLPTNLHRLE  547 (681)
Q Consensus       487 --~~~~~~~~L~~L~l~~~~~l~~~-------------~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~  547 (681)
                        .-+.++..|+.|++.+|.....-             ..-...-+.||++...+|..-..    +...+...+.|+++.
T Consensus       112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr  191 (382)
T KOG1909|consen  112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR  191 (382)
T ss_pred             HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE
Confidence              12234556666666666432111             11122345677777776664322    222355566777777


Q ss_pred             eecCcc-----------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcc-----cccccc-
Q 045938          548 IIDNKK-----------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLE-----RLSSSI-  610 (681)
Q Consensus       548 l~~~~~-----------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-----~l~~~~-  610 (681)
                      +.+|.+           +..+++|+.|++++|  .+..  ......+..++..+.|+.+++++| .++     .+...+ 
T Consensus       192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~--egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~  266 (382)
T KOG1909|consen  192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTL--EGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALK  266 (382)
T ss_pred             EecccccCchhHHHHHHHHhCCcceeeecccc--hhhh--HHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHh
Confidence            777776           336777777777776  1111  011223444556667777777777 443     222222 


Q ss_pred             cCCCCCCEEeecCCCCCcccCC------CCCcccccEEEeCCchh
Q 045938          611 VDLQNLTHLELEDCPKLKYFPE------KGLPSSLLQLYIGGCPL  649 (681)
Q Consensus       611 ~~~~~L~~L~l~~c~~l~~l~~------~~~~~~L~~L~i~~c~~  649 (681)
                      ..+|+|+.|.+.+| .++.=..      ..-.+.|++|++.+|..
T Consensus       267 ~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  267 ESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            23688888888887 3433111      11257788888888765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.31  E-value=4.9e-07  Score=95.77  Aligned_cols=192  Identities=24%  Similarity=0.321  Sum_probs=112.7

Q ss_pred             EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcc-cccEEeeccCCCceecCCCCCCCCCcceEeeccc
Q 045938          425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLR-QLQEIGIWECENLVSFPQGGLPCAKLTRLEISYC  503 (681)
Q Consensus       425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  503 (681)
                      .++...+...... ..+..++.++.|++.++.+... +.....+. +|+.|+++++. +..++.....+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccC-ccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence            3555554432222 2334446677777776666543 33344443 67777777665 4455445566677777777777


Q ss_pred             cccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcCCCc
Q 045938          504 KRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSFPP  577 (681)
Q Consensus       504 ~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~  577 (681)
                      + +..+|...+..+.|+.|++++|. +..+|...+.+.+|+++.+++|..      +.++.++..+.+.+|  .+..++.
T Consensus       174 ~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n--~~~~~~~  249 (394)
T COG4886         174 D-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN--KLEDLPE  249 (394)
T ss_pred             h-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc--eeeeccc
Confidence            6 44555555566777777777765 444554345556677777777732      335666666666654  3333222


Q ss_pred             cccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938          578 EDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE  632 (681)
Q Consensus       578 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  632 (681)
                      ..       ..++++++|++.++ .+..++. +..+.+|+.|+++++......+.
T Consensus       250 ~~-------~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         250 SI-------GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             hh-------ccccccceeccccc-ccccccc-ccccCccCEEeccCccccccchh
Confidence            22       35555777777764 5666665 67777888888888755544444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.30  E-value=2.4e-06  Score=86.90  Aligned_cols=61  Identities=30%  Similarity=0.628  Sum_probs=35.9

Q ss_pred             cCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccc
Q 045938          264 SCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLP  329 (681)
Q Consensus       264 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~  329 (681)
                      ++++++|++++| .+..+|.   -..+|++|.+++|..++.+|.. .+++|++|++++|..+..+|
T Consensus        51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc
Confidence            366777777777 3466652   2235777777776666655532 24566666666665454443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.28  E-value=6.5e-07  Score=81.11  Aligned_cols=78  Identities=15%  Similarity=0.195  Sum_probs=22.2

Q ss_pred             CCccEEeeeCCcCcccCCCCCC-CCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCcccee
Q 045938          265 CILEYIDLRDCQDLVKLPQSPL-SLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEIL  343 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~-~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L  343 (681)
                      .++++|++++|.+ ..+. .++ .+.+|+.|++++|. ++.++.+..+++|++|++++|. +..+...+. ..+++|+.|
T Consensus        19 ~~~~~L~L~~n~I-~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~-~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQI-STIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD-KNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH-HH-TT--EE
T ss_pred             ccccccccccccc-cccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccchH-HhCCcCCEE
Confidence            4466666666655 3232 233 46777788887665 7777766677778888877776 555543321 346777777


Q ss_pred             eecc
Q 045938          344 EIWI  347 (681)
Q Consensus       344 ~l~~  347 (681)
                      ++++
T Consensus        94 ~L~~   97 (175)
T PF14580_consen   94 YLSN   97 (175)
T ss_dssp             E-TT
T ss_pred             ECcC
Confidence            7765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.27  E-value=1.8e-07  Score=88.28  Aligned_cols=118  Identities=19%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             CcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc----cc--cCCcccEEEEec
Q 045938          494 KLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK----IW--KFSSLRQLTISG  567 (681)
Q Consensus       494 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~--~l~~L~~L~l~~  567 (681)
                      .|+++|+++|. ...+..+..-.|.++.|+++.|..... .. +..+++|+.||+++|..    -|  ++-+.++|.+.+
T Consensus       285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV-QN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccc-hhhhhhhhhhccceeEEeccccceeee-hh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            45555555554 233444444555555555555543321 11 44455555555555544    11  344555555555


Q ss_pred             cCCCCcCCCccccccccCCCcccccceeEecccCCcccccc--cccCCCCCCEEeecCCC
Q 045938          568 CDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS--SIVDLQNLTHLELEDCP  625 (681)
Q Consensus       568 ~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~  625 (681)
                      |  .++++..-        .-+.+|..|++.++ +++.+..  +++++|-|+++.+.+||
T Consensus       362 N--~iE~LSGL--------~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  362 N--KIETLSGL--------RKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             h--hHhhhhhh--------Hhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence            4  33333332        13334444444442 3443332  44445555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=3.2e-08  Score=93.26  Aligned_cols=147  Identities=20%  Similarity=0.248  Sum_probs=93.4

Q ss_pred             CCcEEEEcCCCCchh-HHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC--CCCCCCCcceE
Q 045938          422 SLKSLDVWSCSELES-IAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ--GGLPCAKLTRL  498 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L  498 (681)
                      .++.||+++..+... +...+..+.+|+.|.+.++...+.+...+..-.+|+.++++.|.+++....  .+.+|..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477777777655433 334566777888888887777766666666667788888887776654322  33467778888


Q ss_pred             eeccccccccccccC--cccCCcceeeecccCCC---CCccccCCCCCCCceeeeecCcc--------cccCCcccEEEE
Q 045938          499 EISYCKRLQVLPKGL--HNLTSLQQLTIGEGGEL---PSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTI  565 (681)
Q Consensus       499 ~l~~~~~l~~~~~~l--~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l  565 (681)
                      +++-|.........+  +--++|..|+++|+...   ..+.--...+++|.+||+++|..        +.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            887776554332211  11256777788776421   12222245677777788777765        336777788777


Q ss_pred             ecc
Q 045938          566 SGC  568 (681)
Q Consensus       566 ~~~  568 (681)
                      +.|
T Consensus       346 sRC  348 (419)
T KOG2120|consen  346 SRC  348 (419)
T ss_pred             hhh
Confidence            775

>PLN03150 hypothetical protein; Provisional

Probab=98.21  E-value=1.5e-06  Score=96.59  Aligned_cols=107  Identities=20%  Similarity=0.229  Sum_probs=67.2

Q ss_pred             ccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecc
Q 045938          447 LETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE  526 (681)
Q Consensus       447 L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~  526 (681)
                      ++.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666666666666666677777766665555666566666677777777666666666666677777777777


Q ss_pred             cCCCCCccccCCC-CCCCceeeeecCcc
Q 045938          527 GGELPSLEEDDGL-PTNLHRLEIIDNKK  553 (681)
Q Consensus       527 ~~~~~~~~~~~~~-~~~L~~L~l~~~~~  553 (681)
                      |...+.+|..++. ..++..+++.+|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            6666666655443 23444555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.20  E-value=2.4e-07  Score=89.60  Aligned_cols=213  Identities=20%  Similarity=0.212  Sum_probs=148.8

Q ss_pred             chhHHHhcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCc---eecC-------CCCCCCCCcceEe
Q 045938          434 LESIAERLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENL---VSFP-------QGGLPCAKLTRLE  499 (681)
Q Consensus       434 ~~~~~~~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l---~~l~-------~~~~~~~~L~~L~  499 (681)
                      .+.+.+.+..+..++++++++|.+-..    +...+.+.++|+..++++--.-   ..+|       ..+..+|.|++++
T Consensus        19 ~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld   98 (382)
T KOG1909|consen   19 EKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD   98 (382)
T ss_pred             hhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence            344556778899999999999988532    3344566778888888864211   1222       2455678999999


Q ss_pred             eccccccccccc----cCcccCCcceeeecccCCCCC-------------ccccCCCCCCCceeeeecCcc---------
Q 045938          500 ISYCKRLQVLPK----GLHNLTSLQQLTIGEGGELPS-------------LEEDDGLPTNLHRLEIIDNKK---------  553 (681)
Q Consensus       500 l~~~~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~-------------~~~~~~~~~~L~~L~l~~~~~---------  553 (681)
                      ++.|..-...+.    .+..+..|+.|.+.+|..-..             ...-++..++|+++...+|+.         
T Consensus        99 LSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen   99 LSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             ccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence            999986544443    345689999999999974322             112256678999999999987         


Q ss_pred             --cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcc-----cccccccCCCCCCEEeecCCCC
Q 045938          554 --IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLE-----RLSSSIVDLQNLTHLELEDCPK  626 (681)
Q Consensus       554 --~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~  626 (681)
                        +...+.|+++.+..|.-.    |......+....+.+.|+.|++.++ .++     .+...+..+|+|+.|++++| .
T Consensus       179 ~~~~~~~~leevr~~qN~I~----~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-l  252 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIR----PEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-L  252 (382)
T ss_pred             HHHHhccccceEEEeccccc----CchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-c
Confidence              336789999999987322    2222233445568889999999985 333     23346778899999999999 5


Q ss_pred             CcccCC-------CCCcccccEEEeCCchhHHh
Q 045938          627 LKYFPE-------KGLPSSLLQLYIGGCPLIAE  652 (681)
Q Consensus       627 l~~l~~-------~~~~~~L~~L~i~~c~~l~~  652 (681)
                      ++.-..       ....|+|++|++.+|..-.+
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d  285 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRD  285 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence            655322       12378999999999975544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=5.9e-08  Score=91.49  Aligned_cols=63  Identities=17%  Similarity=0.263  Sum_probs=36.3

Q ss_pred             cccCCCccEEEeecccCcc-cccCcCcCcccccEEeeccCCCceecCC---CCCCCCCcceEeeccccc
Q 045938          441 LDNNTSLETISISECENLK-ILPSGLHNLRQLQEIGIWECENLVSFPQ---GGLPCAKLTRLEISYCKR  505 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~L~~L~l~~~~~  505 (681)
                      ...+++|.+||+++|.... .....+..++.|+++.++.|..+  .|.   .+...|+|.+|++.+|-.
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence            3456666666666665432 12233455677777777777644  222   344567777777777643

>PLN03150 hypothetical protein; Provisional

Probab=98.18  E-value=1.8e-06  Score=95.99  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=97.9

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      ++.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            78899999988888898999999999999999999999999999999999999999987778898889999999999999


Q ss_pred             ccccccccccCccc-CCcceeeecccCCCCCc
Q 045938          503 CKRLQVLPKGLHNL-TSLQQLTIGEGGELPSL  533 (681)
Q Consensus       503 ~~~l~~~~~~l~~l-~~L~~L~l~~~~~~~~~  533 (681)
                      |.....+|..++.. .++..+++.+|..+...
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCC
Confidence            99888888877653 46778899888755443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.14  E-value=1.1e-06  Score=92.99  Aligned_cols=163  Identities=24%  Similarity=0.272  Sum_probs=81.7

Q ss_pred             CcEEEEcCCCCchhHHHhcccCC-CccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNT-SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      ++.|++.++.. ..++...+.+. +|+.|++++|.+... |..++.+++|+.|++++|+ +.+++......++|+.|+++
T Consensus       118 l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         118 LTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             eeEEecCCccc-ccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCch-hhhhhhhhhhhhhhhheecc
Confidence            55555555432 23333344442 555555555554432 2334555556666666555 33444433344556666666


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcCC
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSF  575 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l  575 (681)
                      +|. +..+|........|+++.+++|....... .+..+.++..+.+.+|+.      +..+++++.|++++|  .+..+
T Consensus       195 ~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n--~i~~i  270 (394)
T COG4886         195 GNK-ISDLPPEIELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN--QISSI  270 (394)
T ss_pred             CCc-cccCchhhhhhhhhhhhhhcCCcceecch-hhhhcccccccccCCceeeeccchhccccccceeccccc--ccccc
Confidence            554 34444444444445566665554222222 245555555555555543      335556666666665  45444


Q ss_pred             CccccccccCCCcccccceeEeccc
Q 045938          576 PPEDIRLRTTLPLPACLASLMIGNF  600 (681)
Q Consensus       576 ~~~~~~~~~~~~~~~~L~~l~l~~~  600 (681)
                      +. .       ....+++.+++.+.
T Consensus       271 ~~-~-------~~~~~l~~L~~s~n  287 (394)
T COG4886         271 SS-L-------GSLTNLRELDLSGN  287 (394)
T ss_pred             cc-c-------cccCccCEEeccCc
Confidence            44 1       35556666666664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.04  E-value=6e-06  Score=61.05  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             CcceEeecccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938          494 KLTRLEISYCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       494 ~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      +|++|++++|.. ..+| ..+..+++|++|++++|......+..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            455555555542 3333 344555555555555555433333345555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.98  E-value=1.2e-05  Score=59.39  Aligned_cols=9  Identities=44%  Similarity=0.508  Sum_probs=3.4

Q ss_pred             CcEEEEcCC
Q 045938          423 LKSLDVWSC  431 (681)
Q Consensus       423 L~~L~l~~~  431 (681)
                      |++|++++|
T Consensus         3 L~~L~l~~n   11 (61)
T PF13855_consen    3 LESLDLSNN   11 (61)
T ss_dssp             ESEEEETSS
T ss_pred             CcEEECCCC
Confidence            333333333

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.84  E-value=1.2e-06  Score=90.08  Aligned_cols=139  Identities=28%  Similarity=0.330  Sum_probs=77.5

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |+.+.+..| ....+|..++++..|..++++.|.+.. +|..+..++ |+.|.+++|. ++.+|..++..+.|..|+.+.
T Consensus       100 Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  100 LESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhh
Confidence            444444443 234455556666666666666665542 344444333 6666666544 455666555556666666666


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEecc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGC  568 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~  568 (681)
                      |. +..+|..++++.+|+.|.+..|... .+|+.++ .-.|..||++.|++      +.+|..|++|-|.+|
T Consensus       176 ne-i~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  176 NE-IQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             hh-hhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence            65 4556666666666666666666533 3333344 33366666666665      345666666666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.65  E-value=7.2e-06  Score=87.05  Aligned_cols=107  Identities=22%  Similarity=0.177  Sum_probs=43.3

Q ss_pred             cccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcc
Q 045938          441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ  520 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~  520 (681)
                      +..+.+|+.+++.+|.+..... .+..+++|++|++++|. ++.+. ++..++.|+.|++.+|.. ..+ ..+..+++|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNLI-SDI-SGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhccc-chhhhhcchheeccccc-ccccc-chhhccchhhheeccCcc-hhc-cCCccchhhh
Confidence            3444445555555444443111 13344455555555444 22222 122333455555555442 222 1233344455


Q ss_pred             eeeecccCCCCCcc-ccCCCCCCCceeeeecCcc
Q 045938          521 QLTIGEGGELPSLE-EDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       521 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~  553 (681)
                      .+++++|.....-+ . ...+.+++.+++.+|.+
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            55554444322211 1 23444444455544443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=7.2e-05  Score=71.12  Aligned_cols=71  Identities=14%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc--cccCCCCCCEEeecCCCCCcccC
Q 045938          554 IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS--SIVDLQNLTHLELEDCPKLKYFP  631 (681)
Q Consensus       554 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~  631 (681)
                      ..-+|++..+-+..|  .+.+...+.  .+.   -++.+.-|.++. .++.++..  .+..||.|.-|.++++|....+.
T Consensus       195 ~r~Fpnv~sv~v~e~--PlK~~s~ek--~se---~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEG--PLKTESSEK--GSE---PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             HhhcccchheeeecC--cccchhhcc--cCC---CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            446788888888776  444433322  111   222233344444 24444432  56778999999999998888876


Q ss_pred             C
Q 045938          632 E  632 (681)
Q Consensus       632 ~  632 (681)
                      .
T Consensus       267 ~  267 (418)
T KOG2982|consen  267 G  267 (418)
T ss_pred             C
Confidence            5

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.53  E-value=3.5e-06  Score=92.07  Aligned_cols=110  Identities=22%  Similarity=0.343  Sum_probs=53.4

Q ss_pred             CCCcceeeecCCccceeeCccccCCCCCccCCCcceeecccc-CCccccc--ccCCCccccccCCcceEeeccCccccc-
Q 045938           53 LPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDM-QGWEDWI--PHGFSQGVERFPKLRELHILRCSKLKG-  128 (681)
Q Consensus        53 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~-  128 (681)
                      .++|+.|.+.+|..+.+......    ...+++|++|++.++ .......  ....   ...+++|++|++++|..+++ 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~~~~L~~l~l~~~~~isd~  259 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDAL----ALKCPNLEELDLSGCCLLITLSPLLLLLL---LSICRKLKSLDLSGCGLVTDI  259 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHH----HhhCchhheecccCcccccccchhHhhhh---hhhcCCcCccchhhhhccCch
Confidence            56666666666654544221110    112566666666552 1111110  0001   23356666666666654432 


Q ss_pred             ---cCCCCCCCccEEEEccCCCce-----eecCCCCcccEEEECCCCCc
Q 045938          129 ---TFPEHLPALEMLVIEGCEELL-----VSVSSLPSLCKFIIGGCKKI  169 (681)
Q Consensus       129 ---~~~~~l~~L~~L~i~~~~~~~-----~~~~~l~~L~~L~l~~~~~~  169 (681)
                         .+...+++|++|.+.+|..++     .....++.|++|++++|..+
T Consensus       260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence               111235566666666665432     13334666777777777665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.47  E-value=2e-05  Score=83.70  Aligned_cols=58  Identities=16%  Similarity=0.201  Sum_probs=29.7

Q ss_pred             CCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccceeeecc
Q 045938          285 PLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI  347 (681)
Q Consensus       285 ~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~  347 (681)
                      +..+++|+.|++.++. +..+.. ...+++|++|++++|. +..+...   ..++.|+.|++.+
T Consensus        91 l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l---~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLEGL---STLTLLKELNLSG  149 (414)
T ss_pred             cccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccccch---hhccchhhheecc
Confidence            4455666666666543 555444 4555566666666554 4333333   3344455555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.34  E-value=1.8e-05  Score=86.38  Aligned_cols=178  Identities=20%  Similarity=0.288  Sum_probs=93.6

Q ss_pred             CCCccEEEEccCCCcee-----ecCCCCcccEEEECCC-CCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcc
Q 045938          134 LPALEMLVIEGCEELLV-----SVSSLPSLCKFIIGGC-KKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE  207 (681)
Q Consensus       134 l~~L~~L~i~~~~~~~~-----~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  207 (681)
                      .+.|+.+.+.+|..+..     .....+.|++|+++++ ........                    ....+...+++|+
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------~~~~~~~~~~~L~  246 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL--------------------LLLLLLSICRKLK  246 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh--------------------HhhhhhhhcCCcC
Confidence            56666666666654432     3334667777777763 22111110                    0001223457777


Q ss_pred             eEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc--CCCCC
Q 045938          208 ELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK--LPQSP  285 (681)
Q Consensus       208 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--l~~~~  285 (681)
                      .|.+.++....+  .........+++|+.|.+.+|..+++       .++..+...+++|++|++++|..+.+  +....
T Consensus       247 ~l~l~~~~~isd--~~l~~l~~~c~~L~~L~l~~c~~lt~-------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~  317 (482)
T KOG1947|consen  247 SLDLSGCGLVTD--IGLSALASRCPNLETLSLSNCSNLTD-------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALL  317 (482)
T ss_pred             ccchhhhhccCc--hhHHHHHhhCCCcceEccCCCCccch-------hHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence            777777775444  11122233477888888887876554       55666667778888888888777532  22222


Q ss_pred             CCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCc-cccccccCCCCccceeeeccCC
Q 045938          286 LSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKS-LPEAWMCDTNSSLEILEIWICN  349 (681)
Q Consensus       286 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~c~  349 (681)
                      .++++|+.|.+..+..         ++.++.+.+.++..... .........+++++.+.+..|.
T Consensus       318 ~~c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  318 KNCPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhCcchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            3455555554443332         34455555544433321 1111112556666666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.32  E-value=7.9e-06  Score=86.49  Aligned_cols=195  Identities=21%  Similarity=0.228  Sum_probs=119.1

Q ss_pred             cccCCCccEEEeecccCcccc-cCcCcCcccccEEeeccCCCceecCCCCCCC-CCcceEeeccccccccccc-------
Q 045938          441 LDNNTSLETISISECENLKIL-PSGLHNLRQLQEIGIWECENLVSFPQGGLPC-AKLTRLEISYCKRLQVLPK-------  511 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~-------  511 (681)
                      +.-++++..|.+-.-...+-. |-.+..+.+|++|.+.+|+... .. ++..+ ..|+.|-- .+. +..+-.       
T Consensus        80 ~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC-~~S-l~Al~~v~ascgg  155 (1096)
T KOG1859|consen   80 LDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLIC-HNS-LDALRHVFASCGG  155 (1096)
T ss_pred             HHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhh-hcc-HHHHHHHHHHhcc
Confidence            445566666666554433221 4456668899999999987432 21 11111 13444321 111 111100       


Q ss_pred             cCc---ccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccc
Q 045938          512 GLH---NLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLR  583 (681)
Q Consensus       512 ~l~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~  583 (681)
                      .+.   .+-.|...+++.|... .+..++..++.|+.|+|++|+.     +..+++|++|+|+.|  .+..+|.-.    
T Consensus       156 d~~ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN--~L~~vp~l~----  228 (1096)
T KOG1859|consen  156 DISNSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYN--CLRHVPQLS----  228 (1096)
T ss_pred             ccccchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccc--hhccccccc----
Confidence            011   1234666666666543 3334477788899999999887     558899999999998  455555533    


Q ss_pred             cCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC---CCcccccEEEeCCchhHHh
Q 045938          584 TTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK---GLPSSLLQLYIGGCPLIAE  652 (681)
Q Consensus       584 ~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~~  652 (681)
                         ..-..|..|.+.++ .++++- ++.++.+|..|++++| -+....+.   ..+..|..|++.|||.--.
T Consensus       229 ---~~gc~L~~L~lrnN-~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  229 ---MVGCKLQLLNLRNN-ALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ---hhhhhheeeeeccc-HHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence               23334777777774 555553 6789999999999997 55554443   3368899999999986543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.17  E-value=0.00031  Score=47.49  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=27.1

Q ss_pred             CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC
Q 045938          265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE  307 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~  307 (681)
                      ++|++|++++|.+ .++|..++++++|+.|++++|. +++++.
T Consensus         1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N~-i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNNP-ISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred             CcceEEEccCCCC-cccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence            3577777777766 5666667778888888888775 665543

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.11  E-value=0.0001  Score=81.91  Aligned_cols=83  Identities=20%  Similarity=0.196  Sum_probs=45.6

Q ss_pred             CCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccc---cCCCCCCCccEEEEccCCCc-eeecCCCCccc
Q 045938           84 PCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKG---TFPEHLPALEMLVIEGCEEL-LVSVSSLPSLC  159 (681)
Q Consensus        84 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---~~~~~l~~L~~L~i~~~~~~-~~~~~~l~~L~  159 (681)
                      .+|++|++.+-..+..-+....   ...+|+|++|.+.+-.-..+   .+-.+||+|..|||+++.-. ...++.+.+|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~ki---g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKI---GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHH---hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHH
Confidence            4577777766443322221111   24577777777766211111   22245777777777775421 13666677777


Q ss_pred             EEEECCCCCc
Q 045938          160 KFIIGGCKKI  169 (681)
Q Consensus       160 ~L~l~~~~~~  169 (681)
                      .|.+.+-+..
T Consensus       199 ~L~mrnLe~e  208 (699)
T KOG3665|consen  199 VLSMRNLEFE  208 (699)
T ss_pred             HHhccCCCCC
Confidence            7777665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.06  E-value=8.1e-06  Score=86.41  Aligned_cols=123  Identities=24%  Similarity=0.224  Sum_probs=86.7

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~  501 (681)
                      |...+.++|. +..+-..+.-++.|+.|++++|++.+.  +.+..+++|++||+++|. +..+|. ....| .|..|.++
T Consensus       166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             Hhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccch-hccccccchhhh-hheeeeec
Confidence            5666666664 333445567788999999999988874  367788999999999877 555665 22234 49999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCC--ccccCCCCCCCceeeeecCcc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPS--LEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      +|.. ..+ .++.++.+|+-||+++|-..+.  +.+ +..+..|+.|.|.+|..
T Consensus       241 nN~l-~tL-~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNAL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCcc
Confidence            9874 333 3677889999999998865432  222 55566778888888875

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.03  E-value=0.00084  Score=45.36  Aligned_cols=40  Identities=23%  Similarity=0.339  Sum_probs=28.4

Q ss_pred             ccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938          591 CLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE  632 (681)
Q Consensus       591 ~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  632 (681)
                      +|++|+++++ +++.+|..+.++++|+.|++++| .++++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence            4566666664 77788877888889999999887 5666654

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.0002  Score=68.17  Aligned_cols=199  Identities=17%  Similarity=0.071  Sum_probs=109.3

Q ss_pred             cCCCCCCCcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCc-eecCCCCCCC
Q 045938          416 VGNLPPSLKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENL-VSFPQGGLPC  492 (681)
Q Consensus       416 ~~~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~l~~~~~~~  492 (681)
                      ++...+.++++++.+|.+.+  ++..-+.++|.|++|+++.|.....+...-....+|+++.+.+.... .........+
T Consensus        66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            33333458888998886543  23445678899999999988876543222123568888888764421 2233344567


Q ss_pred             CCcceEeeccccccccc---cccCc-ccCCcceeeecccCCCCC--ccccCCCCCCCceeeeecCcc--------cccCC
Q 045938          493 AKLTRLEISYCKRLQVL---PKGLH-NLTSLQQLTIGEGGELPS--LEEDDGLPTNLHRLEIIDNKK--------IWKFS  558 (681)
Q Consensus       493 ~~L~~L~l~~~~~l~~~---~~~l~-~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~--------~~~l~  558 (681)
                      |.+++|+++.|.. +.+   ..... .-+.+++|...+|.....  .-.....+|++..+-+..|.+        .-.+|
T Consensus       146 P~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p  224 (418)
T KOG2982|consen  146 PKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP  224 (418)
T ss_pred             hhhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence            7888888888742 211   11111 123555555555542211  001123456677777777754        22566


Q ss_pred             cccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc------cccCCCCCCEEeec
Q 045938          559 SLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS------SIVDLQNLTHLELE  622 (681)
Q Consensus       559 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~------~~~~~~~L~~L~l~  622 (681)
                      .+..|+++.+  .+.+...     ...+..++.|+.|++.+.|-+..+..      -+..+++++.|+=+
T Consensus       225 ~~~~LnL~~~--~idswas-----vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  225 SLSCLNLGAN--NIDSWAS-----VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             cchhhhhccc--ccccHHH-----HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            6666777665  3332221     12234566677777766655544321      34556666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.90  E-value=0.00031  Score=78.13  Aligned_cols=15  Identities=33%  Similarity=0.264  Sum_probs=8.4

Q ss_pred             CcEEEEcCCCCchhH
Q 045938          423 LKSLDVWSCSELESI  437 (681)
Q Consensus       423 L~~L~l~~~~~~~~~  437 (681)
                      |+.||.++....+.+
T Consensus       252 LrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  252 LRFLDCSGTDINEEI  266 (699)
T ss_pred             ccEEecCCcchhHHH
Confidence            666666665544443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.58  E-value=0.0035  Score=56.70  Aligned_cols=105  Identities=18%  Similarity=0.164  Sum_probs=56.6

Q ss_pred             CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCC-CCCCcceEeeccccccccccc--cCcccCCcce
Q 045938          445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGL-PCAKLTRLEISYCKRLQVLPK--GLHNLTSLQQ  521 (681)
Q Consensus       445 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~  521 (681)
                      .+...+|+++|.+..  -..+.++++|.+|.+.+|. +..+...+. .+|+|+.|.+.+|.. ..+.+  .+..||+|+.
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccce
Confidence            455667777777654  2345567777777777766 334433332 345677777777653 22211  2344556666


Q ss_pred             eeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEec
Q 045938          522 LTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISG  567 (681)
Q Consensus       522 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~  567 (681)
                      |.+-+|+....        ++=+      +..++.+|+|+.|+.++
T Consensus       118 Ltll~Npv~~k--------~~YR------~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHK--------KNYR------LYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcc--------cCce------eEEEEecCcceEeehhh
Confidence            65555543221        0000      00145777777777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.34  E-value=0.0054  Score=55.52  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=74.9

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC--CCCCCCCcceEe
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ--GGLPCAKLTRLE  499 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~  499 (681)
                      +...+++++|.....  ..+..+++|.+|.+.+|.++..-|..-.-+++|..|.+.+|. +..+.+  ....||+|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence            477888888755432  357788999999999999987766655557889999999876 333332  456788999999


Q ss_pred             ecccccccccc---ccCcccCCcceeeeccc
Q 045938          500 ISYCKRLQVLP---KGLHNLTSLQQLTIGEG  527 (681)
Q Consensus       500 l~~~~~l~~~~---~~l~~l~~L~~L~l~~~  527 (681)
                      +-+|+....--   ..+..+|+|+.||+.+-
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99988543221   14566788888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.10  E-value=0.0026  Score=60.01  Aligned_cols=37  Identities=19%  Similarity=0.064  Sum_probs=23.2

Q ss_pred             CCCCCCEEeecCCCCCcc------cCC--CCCcccccEEEeCCch
Q 045938          612 DLQNLTHLELEDCPKLKY------FPE--KGLPSSLLQLYIGGCP  648 (681)
Q Consensus       612 ~~~~L~~L~l~~c~~l~~------l~~--~~~~~~L~~L~i~~c~  648 (681)
                      .+|+|..|...++..-..      +++  ...+|-|..|.++||.
T Consensus       270 ~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr  314 (388)
T COG5238         270 FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR  314 (388)
T ss_pred             cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence            468999998888744322      122  1336677777777764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.89  E-value=0.00078  Score=56.79  Aligned_cols=103  Identities=17%  Similarity=0.117  Sum_probs=51.5

Q ss_pred             cceeeecccCCCC--CccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcc
Q 045938          519 LQQLTIGEGGELP--SLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLP  589 (681)
Q Consensus       519 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~  589 (681)
                      +-.++++.|+...  +.+..+.....|+..+|++|..       ...++.++.|++.+|  .+.++|++.       ...
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n--eisdvPeE~-------Aam   99 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN--EISDVPEEL-------AAM   99 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh--hhhhchHHH-------hhh
Confidence            3445666665331  1222234444555566666554       124455566666655  555555553       345


Q ss_pred             cccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938          590 ACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE  632 (681)
Q Consensus       590 ~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  632 (681)
                      +.|+++++..+ .+...|..+..+.+|..|+.-++ ....++.
T Consensus       100 ~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~  140 (177)
T KOG4579|consen  100 PALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPEN-ARAEIDV  140 (177)
T ss_pred             HHhhhcccccC-ccccchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence            55555555553 34445544444555555555553 4444444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.00057  Score=64.57  Aligned_cols=97  Identities=20%  Similarity=0.187  Sum_probs=69.9

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC--CCCCCCCcceEee
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ--GGLPCAKLTRLEI  500 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l  500 (681)
                      .+.|+.++|... ++ .....++.|++|.|+-|++...  ..+..+.+|++|++..|. +.++.+  .+.++|+|+.|++
T Consensus        21 vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   21 VKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             hhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence            788899998654 33 2346789999999999988763  346778999999999876 444443  3457889999999


Q ss_pred             ccccccccccc-----cCcccCCcceeee
Q 045938          501 SYCKRLQVLPK-----GLHNLTSLQQLTI  524 (681)
Q Consensus       501 ~~~~~l~~~~~-----~l~~l~~L~~L~l  524 (681)
                      ..|+-....+.     .+..+|+|++|+=
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhccC
Confidence            88876544433     4556788887753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.56  E-value=0.0011  Score=56.01  Aligned_cols=104  Identities=19%  Similarity=0.212  Sum_probs=57.5

Q ss_pred             CcEEEEcCCCCc--hhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938          423 LKSLDVWSCSEL--ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI  500 (681)
Q Consensus       423 L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  500 (681)
                      +..++++.|...  .+.+..+.....|...++++|.+.+..+..-..++..+.+++.+|. +.++|..+..+|.|+.+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence            455566666432  2223344455566666666666655444333445566666666655 4556666666666777766


Q ss_pred             ccccccccccccCcccCCcceeeecccC
Q 045938          501 SYCKRLQVLPKGLHNLTSLQQLTIGEGG  528 (681)
Q Consensus       501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~  528 (681)
                      +.|+. ...|..+..+.++-.|+..+|.
T Consensus       108 ~~N~l-~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  108 RFNPL-NAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ccCcc-ccchHHHHHHHhHHHhcCCCCc
Confidence            66663 3344444445555555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.42  E-value=0.00048  Score=65.06  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=25.0

Q ss_pred             CCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEecc
Q 045938          517 TSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGC  568 (681)
Q Consensus       517 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~  568 (681)
                      .+.++|+..||... ++. ....++.|++|.|+-|++     +..|++|++|+|..|
T Consensus        19 ~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN   73 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN   73 (388)
T ss_pred             HHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc
Confidence            34455555555422 221 134455555555555554     235556666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.37  E-value=0.012  Score=55.73  Aligned_cols=40  Identities=13%  Similarity=0.149  Sum_probs=21.2

Q ss_pred             CCCCCCCcEEEEcCCCCchhHH----HhcccCCCccEEEeecccC
Q 045938          417 GNLPPSLKSLDVWSCSELESIA----ERLDNNTSLETISISECEN  457 (681)
Q Consensus       417 ~~~p~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~ls~~~~  457 (681)
                      ..+|. |+..+++.|.+-...|    ..+.+.+.|++|.+++|..
T Consensus        89 lkcp~-l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          89 LKCPR-LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             hcCCc-ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            34444 6666666665433322    3345556666666666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.12  E-value=0.014  Score=55.29  Aligned_cols=58  Identities=16%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             CCccEEeeeCC--cCcccCCCCCCCCCCcceEEEeCCCCcee---ecCCCCCCCceEEEEecCC
Q 045938          265 CILEYIDLRDC--QDLVKLPQSPLSLSSLREIEIYGCSSLVS---FPEVALPSKLKKIEIRECD  323 (681)
Q Consensus       265 ~~L~~L~l~~~--~~~~~l~~~~~~l~~L~~L~L~~~~~l~~---~~~~~~~~~L~~L~l~~~~  323 (681)
                      |+|++|.+++|  .....++.....+++|+++++++|. ++.   +.....+.+|..|++.+|.
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence            56666666666  3333344334455666666666654 332   2333345555566665554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.94  E-value=0.23  Score=42.77  Aligned_cols=76  Identities=22%  Similarity=0.274  Sum_probs=28.6

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCC-CCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGL-PCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~  501 (681)
                      |+.+.+... ....-...+.++++|+.+.+.++ ........+.++++++.+.+..  ....++...+ .+++|+.+++.
T Consensus        14 l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   14 LESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             --EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccC
Confidence            666665531 11111233555555666665543 2222233344555556665543  2233333222 25556655554


Q ss_pred             c
Q 045938          502 Y  502 (681)
Q Consensus       502 ~  502 (681)
                      .
T Consensus        90 ~   90 (129)
T PF13306_consen   90 S   90 (129)
T ss_dssp             T
T ss_pred             c
Confidence            3

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.93  E-value=0.03  Score=53.03  Aligned_cols=60  Identities=15%  Similarity=0.104  Sum_probs=27.2

Q ss_pred             cCCCccEEEeecccCcccccCcCcCcccccEEeeccC--CCceecCCCCCCCCCcceEeecccc
Q 045938          443 NNTSLETISISECENLKILPSGLHNLRQLQEIGIWEC--ENLVSFPQGGLPCAKLTRLEISYCK  504 (681)
Q Consensus       443 ~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~L~~L~l~~~~  504 (681)
                      .+..|+.+++.++..+.  ...+..+++|+.|.++.|  .....++.-.-.+|+|+++.+++|.
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            33444444444443332  112334556666666655  2222333333344566666666655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.52  E-value=0.0074  Score=54.72  Aligned_cols=62  Identities=16%  Similarity=0.303  Sum_probs=39.9

Q ss_pred             CCCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCC---CCCCCccEEEEccCCC
Q 045938           83 FPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEE  147 (681)
Q Consensus        83 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~~  147 (681)
                      +++++.|.+.+|..+.+|+....   ..-.|+|+.|+|++|+++++.-.   ..+++|+.|.+.+-+.
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l---~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERL---GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             cchhhhheeccccchhhHHHHHh---cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            67777777777777777765444   33577788888888877773221   2356666666655443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.70  E-value=0.56  Score=40.34  Aligned_cols=103  Identities=20%  Similarity=0.268  Sum_probs=45.1

Q ss_pred             hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccc-cCcccC
Q 045938          440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPK-GLHNLT  517 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~  517 (681)
                      .+.++++|+.+.+.. .........+.++++|+.+.+...  +..++. .+..+++++.+.+.+ . ...++. .+..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-c-ccccccccccccc
Confidence            355666777777653 233333444666667777777653  444444 334555677777754 2 233333 444567


Q ss_pred             CcceeeecccCCCCCc-cccCCCCCCCceeeeec
Q 045938          518 SLQQLTIGEGGELPSL-EEDDGLPTNLHRLEIID  550 (681)
Q Consensus       518 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~  550 (681)
                      +|+.+.+..+  ...+ ...+..+ +|+.+.+..
T Consensus        82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            7777777543  2222 2235555 666666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.61  E-value=0.013  Score=53.09  Aligned_cols=96  Identities=19%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             CCCcccccccccceeEEEEeecCCCCC--CCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCc
Q 045938           20 KFPTWFGDSSFLKLVTLKFEYCGMCPT--LPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGW   97 (681)
Q Consensus        20 ~~p~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l   97 (681)
                      ..|.+-..  =..++.++-++|. +..  +-.+..++.++.|.+.+|..+.+...+..++    ..++|+.|++++|+..
T Consensus        92 ~lp~~~~~--~~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rI  164 (221)
T KOG3864|consen   92 SLPGPNAD--NVKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRI  164 (221)
T ss_pred             cCCCCCCC--cceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCee
Confidence            45665332  2357777777753 222  2247888999999999999888877665554    3899999999999988


Q ss_pred             ccccccCCCccccccCCcceEeeccCccc
Q 045938           98 EDWIPHGFSQGVERFPKLRELHILRCSKL  126 (681)
Q Consensus        98 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  126 (681)
                      ++...-.    +..+++|+.|.+.+-+..
T Consensus       165 T~~GL~~----L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  165 TDGGLAC----LLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             chhHHHH----HHHhhhhHHHHhcCchhh
Confidence            7743221    567999999999885443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.40  E-value=0.15  Score=26.32  Aligned_cols=17  Identities=35%  Similarity=0.575  Sum_probs=8.0

Q ss_pred             CCCCEEeecCCCCCcccC
Q 045938          614 QNLTHLELEDCPKLKYFP  631 (681)
Q Consensus       614 ~~L~~L~l~~c~~l~~l~  631 (681)
                      ++|+.|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            456666666663 55544

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.59  E-value=0.21  Score=27.82  Aligned_cols=18  Identities=39%  Similarity=0.571  Sum_probs=9.2

Q ss_pred             ccEEeeeCCcCcccCCCCC
Q 045938          267 LEYIDLRDCQDLVKLPQSP  285 (681)
Q Consensus       267 L~~L~l~~~~~~~~l~~~~  285 (681)
                      |++|++++|.. ..+|..+
T Consensus         2 L~~Ldls~n~l-~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNL-TSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEE-SEEGTTT
T ss_pred             ccEEECCCCcC-EeCChhh
Confidence            55555555533 3555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.31  E-value=0.21  Score=27.78  Aligned_cols=12  Identities=25%  Similarity=0.224  Sum_probs=5.1

Q ss_pred             ccEEEeecccCc
Q 045938          447 LETISISECENL  458 (681)
Q Consensus       447 L~~L~ls~~~~~  458 (681)
                      |++|++++|.+.
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=80.58  E-value=0.94  Score=26.36  Aligned_cols=17  Identities=35%  Similarity=0.800  Sum_probs=11.9

Q ss_pred             cCCcceEeeccCccccc
Q 045938          112 FPKLRELHILRCSKLKG  128 (681)
Q Consensus       112 ~~~L~~L~l~~c~~l~~  128 (681)
                      +++|++|++++|+++++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46777777777777663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	681
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 1e-23
 Identities = 67/384 (17%), Positives = 108/384 (28%), Gaps = 85/384 (22%)

Query: 267 LEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALK 326
            E +  +    L                +     S          S   +IE R   ALK
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69

Query: 327 SLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSL 386
           +  +     T      LE+     L      Q P    + L+                  
Sbjct: 70  ATADLLEDATQPGRVALELR-SVPLP-----QFPDQA-FRLS-----------------H 105

Query: 387 LEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTS 446
           L+ + I     L       ELP       +      L++L +     L ++   + +   
Sbjct: 106 LQHMTIDAA-GLM------ELPD-----TMQQFA-GLETLTLARNP-LRALPASIASLNR 151

Query: 447 LETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRL 506
           L  +SI  C  L  LP  L +     E                     L  L + +   +
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQ---------------GLVNLQSLRLEWTG-I 195

Query: 507 QVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTIS 566
           + LP  + NL +L+ L I        L     L   +H L             L +L + 
Sbjct: 196 RSLPASIANLQNLKSLKIRNS----PLSA---LGPAIHHL-----------PKLEELDLR 237

Query: 567 GCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPK 626
           GC   + ++PP              L  L++ +  NL  L   I  L  L  L+L  C  
Sbjct: 238 GCTA-LRNYPPIFGGRA-------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 627 LKYFPEK-GLPSSLLQLYIGGCPL 649
           L   P       +   + +     
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 66/395 (16%), Positives = 111/395 (28%), Gaps = 79/395 (20%)

Query: 130 FPEHLPALEMLVIEGC---EELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVC 186
              H    E L  +G          +S                       +  +      
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA---WRQANSNNPQIETR 63

Query: 187 RDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQ 246
              + +           P    LE+  +            L      L+ +TI +   L 
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLS----HLQHMTIDAA-GLM 117

Query: 247 SLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP 306
            L           + Q +  LE + L     L  LP S  SL+ LRE+ I  C  L   P
Sbjct: 118 ELPDT--------MQQFAG-LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELP 167

Query: 307 EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWT 366
           E           +   DA              +L+ L +     +       LP S+   
Sbjct: 168 E----------PLASTDASGEHQGL------VNLQSLRLE-WTGIR-----SLPASI--- 202

Query: 367 LTVEEGIQSSSSSRRYTSSL--LEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK 424
                            ++L  L+ L I     L+       L   +  L        L+
Sbjct: 203 -----------------ANLQNLKSLKIRNS-PLS------ALGPAIHHLP------KLE 232

Query: 425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVS 484
            LD+  C+ L +          L+ + + +C NL  LP  +H L QL+++ +  C NL  
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 485 FPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL 519
            P           + +    + Q+         + 
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 53/332 (15%), Positives = 99/332 (29%), Gaps = 77/332 (23%)

Query: 7   NLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP-SVGQLPSLKHLAVCGMT 65
           N +    +G           D++    V L+     + P  P    +L  L+H+ +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDA-A 114

Query: 66  SVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSK 125
            +  L            F  LETL           +P   +       +LREL I  C +
Sbjct: 115 GLMELPDTM-QQ-----FAGLETLTLARNPLRA--LPASIAS----LNRLRELSIRACPE 162

Query: 126 LKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVV 185
           L    PE L            +       L +L    +         ++  +L       
Sbjct: 163 LT-ELPEPL---------ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL------- 205

Query: 186 CRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNEL------LQDICSLKRLTI 239
                               L+ L+I            ++ L      +  +  L+ L +
Sbjct: 206 ------------------QNLKSLKI-----------RNSPLSALGPAIHHLPKLEELDL 236

Query: 240 TSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGC 299
             C  L++                +  L+ + L+DC +L+ LP     L+ L ++++ GC
Sbjct: 237 RGCTALRNYPPI--------FGGRAP-LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 300 SSLVSFP-EVALPSKLKKIEIRECDALKSLPE 330
            +L   P  +A       I +      +    
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 51/337 (15%), Positives = 97/337 (28%), Gaps = 86/337 (25%)

Query: 6   KNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMT 65
              ++   +            +S+  ++ T           L      P    L      
Sbjct: 33  SQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL------ 86

Query: 66  SVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSK 125
                  E            L               P    +       L+ +  +  + 
Sbjct: 87  -------ELRSVP-------LPQF------------PDQAFR----LSHLQHMT-IDAAG 115

Query: 126 LKGTFPE---HLPALEMLVIEGC--EELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGS 180
           L    P+       LE L +       L  S++SL  L +  I  C +         L  
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE---------LTE 165

Query: 181 QNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQ---DICSLKRL 237
               +    ++           +  L+ L +               +      I +L+ L
Sbjct: 166 LPEPLASTDASGEH------QGLVNLQSLRL-----------EWTGIRSLPASIANLQNL 208

Query: 238 T---ITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREI 294
               I +   L +L           +  L   LE +DLR C  L   P      + L+ +
Sbjct: 209 KSLKIRNS-PLSALGPA--------IHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 295 EIYGCSSLVSFP-EVALPSKLKKIEIRECDALKSLPE 330
            +  CS+L++ P ++   ++L+K+++R C  L  LP 
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 5e-12
 Identities = 75/584 (12%), Positives = 162/584 (27%), Gaps = 112/584 (19%)

Query: 114 KLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIV 170
           ++  L  L      G  P+    L  LE+L +    E +      P      +   +K  
Sbjct: 82  RVTGLS-LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 171 W--ESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELL 228
                    +         D       + P +  I K   + + D    T I +  N + 
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD----TQIGQLSNNIT 196

Query: 229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSL 288
             +       +    KL+           + +C+     E  +    Q          +L
Sbjct: 197 F-VSK----AVMRLTKLRQFYMGNSPFVAENICEA---WENENSEYAQQYKTEDLKWDNL 248

Query: 289 SSLREIEIYGCSSLVSFP-EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI 347
             L ++E+Y C +L   P  +    +++ I +       S  +      +    + +  +
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQ----LKDDWQALADAPV 303

Query: 348 CNSLTY-------IAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTC 400
              +         +    +  S                             + +   L  
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETS-----------------------------LQKMKKLGM 334

Query: 401 IF-SKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNN-TSLETISISECENL 458
           +    N+L   L +   G+    L SL++     +  I          +E +S +    L
Sbjct: 335 LECLYNQLEGKLPAF--GSEI-KLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN-KL 389

Query: 459 KILPS--GLHNLRQLQEIGIW-------ECENLVSFPQGGLPCAKLTRLEISYCKRLQVL 509
           K +P+     ++  +  I          + +N             ++ + +S  + +   
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF 448

Query: 510 PKG-LHNLTSLQQL--------TIGEGGELPSLEEDDGLPTNLHRL--------EIIDNK 552
           PK      + L  +         I +       E        L  +        ++ D+ 
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT-YLLTSIDLRFNKLTKLSDDF 507

Query: 553 KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLER------L 606
           +      L  + +S        FP + +   T       L    I N  + +        
Sbjct: 508 RATTLPYLVGIDLSYNS--FSKFPTQPLNSST-------LKGFGIRNQRDAQGNRTLREW 558

Query: 607 SSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI 650
              I    +LT L++     ++   E  +  ++  L I   P I
Sbjct: 559 PEGITLCPSLTQLQIGSN-DIRKVNE-KITPNISVLDIKDNPNI 600

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 25/223 (11%), Positives = 69/223 (30%), Gaps = 26/223 (11%)

Query: 441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGI----WECENLVSFPQGGLPCAKLT 496
           L++N  +  +S+        +P  +  L +L+ + +     +    +  P+G        
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 497 RLEISYCKRLQVLPKGLH--NLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDN--- 551
           + +       +         + + L +  I    +  S+++   +     ++  + N   
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 552 ---KKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS 608
              K + + + LRQ  +                      +     +         +    
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPF-------------VAENICEAWENENSEYAQQYKTEDL 243

Query: 609 SIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLI 650
              +L++LT +E+ +CP L   P        +  + +     I
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 64/511 (12%), Positives = 140/511 (27%), Gaps = 130/511 (25%)

Query: 48  PSVGQLPSLKHLAVCGMTSVKRLGSEFYGND--TPIPFPCLETLHFEDMQGWEDWIPHGF 105
            +V +L  L+   +               +           E  + E  Q ++      +
Sbjct: 200 KAVMRLTKLRQFYM-------------GNSPFVAENICEAWENENSEYAQQYK-TEDLKW 245

Query: 106 SQGVERFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVSSLPSLCKFI 162
                    L ++ +  C  L    P     LP ++++ +       +S   L    + +
Sbjct: 246 DN----LKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNR--GISGEQLKDDWQAL 298

Query: 163 --IGGCKKIVWESATGHLG-SQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTY 219
                 +KI        +    N+              P++  + K+++L + +      
Sbjct: 299 ADAPVGEKIQ------IIYIGYNN----------LKTFPVETSLQKMKKLGMLEC----- 337

Query: 220 IWKSHNEL---LQDICSLKRLT--------ITSCPKLQSLVAEEEKDQQQQLCQLSCILE 268
               +N+L   L    S  +L         IT  P                 C  +  +E
Sbjct: 338 ---LYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA--------------NFCGFTEQVE 380

Query: 269 YIDLRDCQDLVKLPQSPL--SLSSLREIEIYG-------CSSLVSFP-EVALPSKLKKIE 318
            +     + L  +P      S+S +  I+            +             +  I 
Sbjct: 381 NLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 319 IRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSS 378
           +     +   P+     T S L  + + + N LT     ++P +                
Sbjct: 440 LSNNQ-ISKFPKEL-FSTGSPLSSINL-MGNMLT-----EIPKNSLKDENEN-------- 483

Query: 379 SRRYTSSLLEGLHISRCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLDVWSCSELESI 437
                              LT I    N+L    +      L P L  +D+   S     
Sbjct: 484 -------------FKNTYLLTSIDLRFNKLTKLSDDFRATTL-PYLVGIDLSYNS-FSKF 528

Query: 438 AERLDNNTSLETISISECENL------KILPSGLHNLRQLQEIGIWECENLVSFPQGGLP 491
             +  N+++L+   I    +       +  P G+     L ++ I    ++    +   P
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKITP 587

Query: 492 CAKLTRLEISYCKRLQVLPKGLHNLTSLQQL 522
              ++ L+I     + +    +         
Sbjct: 588 --NISVLDIKDNPNISIDLSYVCPYIEAGMY 616

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 9e-11
 Identities = 91/412 (22%), Positives = 138/412 (33%), Gaps = 93/412 (22%)

Query: 272 LRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALP-SKLKKIEIRECDALKSLPE 330
           LR   +L ++P    ++ S  E          + P       ++    +R+C        
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-------- 68

Query: 331 AWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGL 390
                 +     LE+     L+      LP                          LE L
Sbjct: 69  -----LDRQAHELELN-NLGLS-----SLPELPPH---------------------LESL 96

Query: 391 HISRCPSLTCIFSKNELPATLESLEVGN--------LPPSLKSLDVWSCSELESIAERLD 442
             S   SLT +    ELP +L+SL V N        LPP L+ L V S ++LE + E L 
Sbjct: 97  VASCN-SLTEL---PELPQSLKSLLVDNNNLKALSDLPPLLEYLGV-SNNQLEKLPE-LQ 150

Query: 443 NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502
           N++ L+ I +    +LK LP    +L  +          L   P+       LT +    
Sbjct: 151 NSSFLKIIDVDNN-SLKKLPDLPPSLEFIA----AGNNQLEELPELQ-NLPFLTAIYADN 204

Query: 503 CKRLQVLPKGLHNLTSLQ----QLT-IGEGGELPSLEEDD----------GLPTNLHRLE 547
              L+ LP    +L S+      L  + E   LP L               LP +L  L 
Sbjct: 205 NS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALN 263

Query: 548 IIDNKKIW---KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLE 604
           + DN          SL  L +S      +S  P ++     L   +     +    P+LE
Sbjct: 264 VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL---YYLNASSNEIRSLCDLPPSLE 320

Query: 605 RLS------SSI-VDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL 649
            L+        +      L  L       L   PE  LP +L QL++   PL
Sbjct: 321 ELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 70/328 (21%), Positives = 117/328 (35%), Gaps = 59/328 (17%)

Query: 205 KLEEL-EINDMKEQTYIWKSHN---ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQL 260
           +LE+L E+ +      I   +N   +L     SL+ +   +  +L+ L          +L
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN-QLEEL---------PEL 191

Query: 261 CQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIR 320
             L   L  I   +      L + P    SL  I       L   PE+     L  I   
Sbjct: 192 QNLPF-LTAIYADNNS----LKKLPDLPLSLESIVAGNNI-LEELPELQNLPFLTTIYAD 245

Query: 321 ECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSR 380
               LK+LP+        SLE L +   N LT      LP   + +LT  +  ++  S  
Sbjct: 246 NNL-LKTLPDLP-----PSLEALNVR-DNYLT-----DLPELPQ-SLTFLDVSENIFSGL 292

Query: 381 RYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGN--------LPPSLKSLDVWSCS 432
                 L  L+ S    +  +    +LP +LE L V N        LPP L+ L   S +
Sbjct: 293 SELPPNLYYLNASSN-EIRSLC---DLPPSLEELNVSNNKLIELPALPPRLERLIA-SFN 347

Query: 433 ELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPC 492
            L  + E      +L+ + +     L+  P    ++  L+        +L   P+     
Sbjct: 348 HLAEVPELP---QNLKQLHVEYN-PLREFPDIPESVEDLRM-----NSHLAEVPEL---P 395

Query: 493 AKLTRLEISYCKRLQVLPKGLHNLTSLQ 520
             L +L +     L+  P    ++  L+
Sbjct: 396 QNLKQLHVETN-PLREFPDIPESVEDLR 422

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 52/268 (19%), Positives = 85/268 (31%), Gaps = 44/268 (16%)

Query: 387 LEGLHISRCPSLTCIF-SKNELPATLESLEVGNLP---------PSLKSLDVWSCSELES 436
           +  L +S+  +LT +    N+L     +L+V  L            L  LDV     L  
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKL----TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131

Query: 437 IAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT 496
           +      N +L  I +S    L  L    H  +++ ++ +     L +         K+T
Sbjct: 132 L--NCARN-TLTEIDVSHNTQLTEL--DCHLNKKITKLDVTPQTQLTTL---DCSFNKIT 183

Query: 497 RLEISYCKRLQVL--------PKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEI 548
            L++S  K L  L           L+    L  L      +L  +  D    T L   + 
Sbjct: 184 ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCS-SNKLTEI--DVTPLTQLTYFDC 240

Query: 549 IDNK----KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPAC--LASLMIGNFPN 602
             N      +   S L  L     D  ++                 C  +  L + +   
Sbjct: 241 SVNPLTELDVSTLSKLTTLHCIQTD--LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298

Query: 603 LERLSSSIVDLQNLTHLELEDCPKLKYF 630
           L  L         +T L+L   PKL Y 
Sbjct: 299 LYLLD---CQAAGITELDLSQNPKLVYL 323

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 3e-10
 Identities = 99/597 (16%), Positives = 178/597 (29%), Gaps = 203/597 (34%)

Query: 180 SQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDM-------KEQTYIWKSHNELLQDIC 232
            ++    +D    VF        +   +  ++ DM       +E  +I  S + +     
Sbjct: 12  GEHQYQYKDIL-SVFE----DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--- 63

Query: 233 SLKRLTITSCPKLQSLVAE--EEKDQ----------QQQLCQLSCILE-YIDLRD--CQD 277
              RL  T   K + +V +  EE  +          + +  Q S +   YI+ RD    D
Sbjct: 64  -TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 278 LVKLPQSPLS-----------LSSLRE---IEIYG---C--SSLVSFPEVALPSKLKK-- 316
                +  +S           L  LR    + I G      + +    +V L  K++   
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKM 180

Query: 317 ------IEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVE 370
                 + ++ C+              + LE+L       L Y    Q+ P+        
Sbjct: 181 DFKIFWLNLKNCN-----------SPETVLEML-----QKLLY----QIDPNW------T 214

Query: 371 EGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESL-EVGNLPPSLKSLDVW 429
                SS+ +    S+   L   R      +         L  L  V N   +  + ++ 
Sbjct: 215 SRSDHSSNIKLRIHSIQAEL--RR------LLKSKPYENCLLVLLNVQN-AKAWNAFNL- 264

Query: 430 SCSEL-----ESIAERLDNNT----SLETIS--ISECENLKIL-------PSGL------ 465
           SC  L     + + + L   T    SL+  S  ++  E   +L       P  L      
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 466 HNLRQLQEIG--------IWECENLVSFPQGGLPCAKLTR-LEISYCKRLQVL-PKGLHN 515
            N R+L  I          W+     ++    + C KLT  +E S    L VL P     
Sbjct: 325 TNPRRLSIIAESIRDGLATWD-----NWKH--VNCDKLTTIIESS----LNVLEPAEYRK 373

Query: 516 LTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSF 575
           +    +L++              +PT L  L +I     W               D++  
Sbjct: 374 M--FDRLSV--------FPPSAHIPTIL--LSLI-----W--------------FDVIKS 402

Query: 576 PPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKL-------- 627
               +       +       ++   P     + SI  +     ++LE+   L        
Sbjct: 403 DVMVV-------VNKLHKYSLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 628 ---KYFPEKGLPSSLLQLYIGGCPLIA---EKCRKDGGQYWDLLTHIPKVKIDFKWV 678
              K F    L    L  Y      I    +       +   L      V +DF+++
Sbjct: 454 NIPKTFDSDDLIPPYLDQYF--YSHIGHHLKNIEHP--ERMTLF---RMVFLDFRFL 503

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 7e-10
 Identities = 60/342 (17%), Positives = 109/342 (31%), Gaps = 88/342 (25%)

Query: 52  QLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL--ETLHFEDMQGWED----WIPHGF 105
           +L   K++ + G+     LGS   G         +  +      +Q   D    W+    
Sbjct: 146 ELRPAKNVLIDGV-----LGS---GKT------WVALDVCLSYKVQCKMDFKIFWL---- 187

Query: 106 SQGVERFPK--LRELHILRCSKLKGTF---PEHLPALEMLVIEGCEE------------- 147
           +      P+  L  L  L   ++   +    +H   +++ +     E             
Sbjct: 188 NLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 148 LLV--SVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPK 205
           LLV  +V +  +   F +  CK ++    T           R      FL+      I  
Sbjct: 247 LLVLLNVQNAKAWNAFNLS-CKILL---TT-----------RFKQVTDFLSAATTTHIS- 290

Query: 206 LEELEINDMKEQTYIWKSHNELL-----QDICSLKRLTITSCPKLQSLVAEEEKDQQQQL 260
           L+   +    ++         LL          L R  +T+ P+  S++AE  +D     
Sbjct: 291 LDHHSMTLTPDEV------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---- 340

Query: 261 CQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGC-SSLVSFPE-VALPSKLKKIE 318
                  +     +C  L  + +S  SL+ L   E       L  FP    +P+ L  + 
Sbjct: 341 ---LATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LS 393

Query: 319 IRECDALKSLPEAWMCD-TNSSLEILEIWICNSLTYIAGVQL 359
           +   D +KS     +      SL  +E     S   I  + L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYL 433

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 80/504 (15%), Positives = 144/504 (28%), Gaps = 157/504 (31%)

Query: 253 EKDQQQQLCQ--LSCILE-YIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVA 309
           E  + Q   +  LS   + ++D  DC+D+  +P+S LS   +  I             + 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-------------IM 56

Query: 310 LPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTV 369
               +     R    L S  E          E+++ ++           L  + K+ ++ 
Sbjct: 57  SKDAVSGTL-RLFWTLLSKQE----------EMVQKFV--------EEVLRINYKFLMSP 97

Query: 370 --EEGIQSSSSSRRYTS---------SLLEGLHISRCPSLTCIFSKNELPATLESLEVGN 418
              E  Q S  +R Y            +    ++SR           +L   L  L    
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL------KLRQALLELRPAK 151

Query: 419 ------LPPSLKS---LDV---------------W----SCSELESIAERLDN-NTSLET 449
                 +  S K+   LDV               W    +C+  E++ E L      ++ 
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 450 ISISECENLKILPSGLHN----LRQLQEI-----------GIWECENLVSFPQGGLPCAK 494
              S  ++   +   +H+    LR+L +             +   +   +F    L C  
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSCKI 268

Query: 495 L--TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552
           L  TR                        L+      +        L T      +    
Sbjct: 269 LLTTR-----------------FKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSL---- 306

Query: 553 KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFP---------NL 603
                          C       P E   + TT P    + +  I +           N 
Sbjct: 307 ----LLK-----YLDCRPQ--DLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 604 ERLSSSI-VDLQNLTHLELEDC-PKLKYFPEK-GLPSSLLQLYIGG-----CPLIAEKCR 655
           ++L++ I   L  L   E      +L  FP    +P+ LL L           ++  K  
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 656 KDG---GQYWDLLTHIPKVKIDFK 676
           K      Q  +    IP + ++ K
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELK 436

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 48/432 (11%), Positives = 118/432 (27%), Gaps = 83/432 (19%)

Query: 267 LEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALK 326
           +  + L       ++P +   L+ L+ +     S  VS            +       ++
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 327 SLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSL 386
              +    D +  L + ++ + +++     ++           +  I + ++        
Sbjct: 385 MHYKKMFLDYDQRLNLSDL-LQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-------R 436

Query: 387 LEGLH--ISRCPSLTCIF-SKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDN 443
           +  +   I R   L  I+ + +       ++         +  +     + E+      N
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAV-------DWEDANSDYAKQYENEELSWSN 489

Query: 444 NTSLETISISECENLKILPSGLHNLRQLQEIGIW---------ECENLVSFPQGGLPCAK 494
              L  + +  C N+  LP  L++L +LQ + I             +            K
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 495 LTRLEISYCKRLQVLPK--GLHNLTSLQQL--------TIGEGGELPSLEE--------- 535
           +    + Y   L+  P    L  +  L  L         +   G    L +         
Sbjct: 550 IQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE 608

Query: 536 --DDGLPTNLHRLEIID---NK-----KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTT 585
              +       ++E +    NK      I+   S+  +       + +     +I     
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI----- 663

Query: 586 LPLPACLASLMIGNFPNLERLS-----------SSIVDLQNLTHLELEDCPKLKYFPE-- 632
                   S+      N   ++                   ++ + L +   +   PE  
Sbjct: 664 ------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENS 716

Query: 633 -KGLPSSLLQLY 643
            K    +    Y
Sbjct: 717 LKPKDGNYKNTY 728

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 51/447 (11%), Positives = 129/447 (28%), Gaps = 94/447 (21%)

Query: 223 SHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQ------ 276
           S     +     K++ +    +L      ++   +    +       I L+D Q      
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 277 DLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDT 336
            +  + ++   L+ L+ I          F    +    +          ++   +W   +
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSP----FTYDNIAVDWEDANSDYAKQYENEELSW---S 488

Query: 337 N-SSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRC 395
           N   L  +E++ C ++T +     P  L         +             L+ L+I+  
Sbjct: 489 NLKDLTDVELYNCPNMTQL-----PDFLY-------DLPE-----------LQSLNIACN 525

Query: 396 P---SLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESI--AERLDNNTSLETI 450
               +         L    ++       P ++   +   + LE    +  L     L  +
Sbjct: 526 RGISAAQLKADWTRLADDEDTG------PKIQIFYMGYNN-LEEFPASASLQKMVKLGLL 578

Query: 451 SISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAK-LTRLEISYCKRLQVL 509
                  ++ L +      +L ++ +     +   P+        +  L  S+ K L+ +
Sbjct: 579 DCVHN-KVRHLEA-FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYI 634

Query: 510 PK--GLHNLTSLQQLTIGE---GGELPSLEEDDGL--PTNLHRLEIIDNK-------KIW 555
           P      ++  +  +       G E  ++          N   + +  N+          
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 556 KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQN 615
             S +  + +S               + T++P  +             +    +  +   
Sbjct: 695 TGSPISTIILSNN------------LM-TSIPENSL------------KPKDGNYKNTYL 729

Query: 616 LTHLELEDCPKLKYFPEKGLPSSLLQL 642
           LT ++L    KL    +    ++L  L
Sbjct: 730 LTTIDLRFN-KLTSLSDDFRATTLPYL 755

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 90/562 (16%), Positives = 169/562 (30%), Gaps = 88/562 (15%)

Query: 32  KLVTLKFEYCGMCPTLP-SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLH 90
           ++  L     G    +P ++GQL  LK L+  G  S    G  F   +            
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSF-GTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 91  FEDMQGWEDWIPHGFSQGVERFPKLRELH--ILRCSKLKGTFPEHLPALEMLVIEGCEEL 148
                         F    +R      L   I R  ++K    +   +L+   I      
Sbjct: 383 IRM------HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 149 LVSVSS----LPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIP 204
           +  +S     L  L            +++        NS   +   N+      LK    
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLK---- 491

Query: 205 KLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQ--QQLCQ 262
            L ++E+ +    T +     + L D+  L+ L I    +  S    +    +       
Sbjct: 492 DLTDVELYNCPNMTQL----PDFLYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDT 546

Query: 263 LSCILEYIDLRDCQDLVKLPQSPL--SLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIR 320
               ++   +     L + P S     +  L  ++      +          KL  +++ 
Sbjct: 547 GPK-IQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLD 603

Query: 321 ECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKW---------TLTVEE 371
               ++ +PE   C     +E L     N L YI  +    S+            +  E 
Sbjct: 604 YN-QIEEIPE-DFCAFTDQVEGLGFS-HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660

Query: 372 GIQSSSSSRRYTSSL---------LEGLH---ISRCPSLTCI-FSKNEL------PATLE 412
              S S       +          ++       +    ++ I  S N +          +
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 413 SLEVGNLPPSLKSLDVWSCSELESIAE--RLDNNTSLETISISECENLKILPSGLHNLRQ 470
                N    L ++D+   ++L S+++  R      L  + +S        P+   N  Q
Sbjct: 721 DGNYKNTY-LLTTIDL-RFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQ 777

Query: 471 LQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGEL 530
           L+  GI    +                      + L+  P G+    SL QL IG   ++
Sbjct: 778 LKAFGIRHQRDA------------------EGNRILRQWPTGITTCPSLIQLQIG-SNDI 818

Query: 531 PSLEEDDGLPTNLHRLEIIDNK 552
             +  D+ L   L+ L+I DN 
Sbjct: 819 RKV--DEKLTPQLYILDIADNP 838

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 30/229 (13%)

Query: 418 NLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLKILPSG-LHNLRQLQEIG 475
           +LP +   L       L  I +        LE I IS+ + L+++ +    NL +L EI 
Sbjct: 27  DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 476 IWECENLVSFPQG---GLPCAKLTRLEISYCKRLQVLPKGLH-NLTSLQQLTIGEGGELP 531
           I +  NL+         LP   L  L IS    ++ LP     +      L I +   + 
Sbjct: 86  IEKANNLLYINPEAFQNLP--NLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 532 SLEED--DGLPTNLHRLEIIDNKKIWK-----FSSLRQLTISGCDDDMVSFPPEDI--RL 582
           ++E +   GL      L +  N  I +     F+  +   ++  D++ +   P D+    
Sbjct: 143 TIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP 631
                       L I     +  L S    L+NL  L       LK  P
Sbjct: 202 S-------GPVILDISRTR-IHSLPSYG--LENLKKLRARSTYNLKKLP 240

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 49/472 (10%), Positives = 129/472 (27%), Gaps = 74/472 (15%)

Query: 96  GWEDWIPHGFSQGVERFPKLRELHILRC----SKLKGTFPEHLPALEMLVIEGCEE---- 147
            W  ++    ++      +L+ +H  R       L          LE L ++ C      
Sbjct: 95  NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154

Query: 148 -LLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVV----------CRDTSNQVFLA 196
            LL  V+    +   ++        +    H  +Q++                S +    
Sbjct: 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214

Query: 197 GPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQ 256
             +      L  +++ D +    +     +   ++      ++     +          +
Sbjct: 215 --IARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270

Query: 257 QQQLCQLSCI--------------LEYIDLRDCQDLV-KLPQSPLSLSSLREIEIYGCSS 301
           +     LS +              +  +DL                  +L  +E      
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330

Query: 302 LVSFPEVALP-SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLP 360
                 +A    +LK++ I      + + +     +   L  L    C  L Y+      
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ-GCQELEYM------ 383

Query: 361 PSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESL------ 414
            ++  +    E ++S  +  +        + + R   +T +   N + + L         
Sbjct: 384 -AVYVSDITNESLESIGTYLKNLCD-FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441

Query: 415 ---------------EVGNLPPSLKSLDVWSCSEL-ESIAERLDNNTSLETISISECENL 458
                           +G   P+++ + +    E  E + E      +L+ + +  C   
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 459 -KILPSGLHNLRQLQEIGIWECE---NLVSFPQGGLPCAKLTRLEISYCKRL 506
            + + + +  L  L+ + +             Q   P   +  +       +
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 61/275 (22%), Positives = 110/275 (40%), Gaps = 32/275 (11%)

Query: 391 HISRCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLET 449
            +     L  I  + N++ A +  L   NL  +L  L +++  ++  I + L N T+L  
Sbjct: 85  PLKNLTKLVDILMNNNQI-ADITPL--ANLT-NLTGLTLFNN-QITDI-DPLKNLTNLNR 138

Query: 450 ISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVL 509
           + +S    +  + + L  L  LQ++      N V+  +       L RL+IS  K +  +
Sbjct: 139 LELSSN-TISDISA-LSGLTSLQQL---SFGNQVTDLKPLANLTTLERLDISSNK-VSDI 192

Query: 510 PKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK--KIWKFSSLRQLTISG 567
              L  LT+L+ L      ++  +     L TNL  L +  N+   I   +SL  LT   
Sbjct: 193 S-VLAKLTNLESLIATNN-QISDITPLGIL-TNLDELSLNGNQLKDIGTLASLTNLTDLD 249

Query: 568 CDDDMVSFPPEDIRLR--TTLPLPAC-LASL-MIGNFPNLERLS---------SSIVDLQ 614
             ++ +S       L   T L L A  ++++  +     L  L          S I +L+
Sbjct: 250 LANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 309

Query: 615 NLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL 649
           NLT+L L     +         + L +L+     +
Sbjct: 310 NLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 61/277 (22%), Positives = 107/277 (38%), Gaps = 51/277 (18%)

Query: 411 LESLE-VGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLR 469
           ++S++ V  L  +L  ++  S ++L  I   L N T L  I ++  +   I  + L NL 
Sbjct: 58  IKSIDGVEYLN-NLTQINF-SNNQLTDITP-LKNLTKLVDILMNNNQIADI--TPLANLT 112

Query: 470 QLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK-----------RLQVL--------P 510
            L  + ++  +     P   L    L RLE+S               LQ L         
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 170

Query: 511 KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK-----KIWKFSSLRQLTI 565
           K L NLT+L++L I    ++  +     L TNL  L   +N+      +   ++L +L++
Sbjct: 171 KPLANLTTLERLDIS-SNKVSDISVLAKL-TNLESLIATNNQISDITPLGILTNLDELSL 228

Query: 566 SGCDDDMVSFPPEDIRLR--TTLPLPAC-LASL-MIGNFPNLERLS---------SSIVD 612
           +G     +        L   T L L    +++L  +     L  L          S +  
Sbjct: 229 NGN---QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285

Query: 613 LQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL 649
           L  LT+LEL +  +L+         +L  L +    +
Sbjct: 286 LTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 74/380 (19%), Positives = 117/380 (30%), Gaps = 73/380 (19%)

Query: 267 LEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALK 326
              +++ +   L  LP      + +  + I   + L S P   LP +L+ +E+     L 
Sbjct: 42  NAVLNVGESG-LTTLPDC--LPAHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LT 94

Query: 327 SLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSL 386
           SLP          L I    +   L       LP  L   L +  G Q +S         
Sbjct: 95  SLPVLPPGLLE--LSIFSNPL-THLP-----ALPSGLC-KLWIF-GNQLTSLPVLPPG-- 142

Query: 387 LEGLHISRCPSLTCIFSKNELPATLESLEVGN--------LPPSLKSLDVWSCSELESIA 438
           L+ L +S    L  +     LP+ L  L   N        LP  L+ L V S ++L S+ 
Sbjct: 143 LQELSVSDNQ-LASL---PALPSELCKLWAYNNQLTSLPMLPSGLQELSV-SDNQLASLP 197

Query: 439 E--------RLDNN---------TSLETISISECENLKILPSGLHNLRQLQEIGIWECEN 481
                       NN         + L+ + +S    L  LP     L++L          
Sbjct: 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKEL------MVSG 250

Query: 482 --LVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGL 539
             L S P      + L  L +    +L  LP+ L +L+S   + + EG  L         
Sbjct: 251 NRLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL-EGNPLSERTLQ--A 303

Query: 540 PTNLHRLEIIDNKKI---WKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLM 596
              +          I      +S  + T +          P                  M
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH-----M 358

Query: 597 IGNFPNLERLSSSIVDLQNL 616
            G   N +  S  +  L   
Sbjct: 359 FGQEDNADAFSLFLDRLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 55/250 (22%), Positives = 83/250 (33%), Gaps = 55/250 (22%)

Query: 428 VWSCSELESIAERLDNN-TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFP 486
           VWS     + AE        ++ +         +L     N+ +           L + P
Sbjct: 11  VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVL-----NVGESG---------LTTLP 56

Query: 487 QGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ----QLTI--GEGGELPSLEEDD--- 537
                   +T L I     L  LP     L +L+    QLT        L  L       
Sbjct: 57  DCLPA--HITTLVIPDN-NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL 113

Query: 538 ----GLPTNLHRLEIIDNKKIW---KFSSLRQLTISGCDDDMVSFPPEDIRLR------- 583
                LP+ L +L I  N+          L++L++S     + S P     L        
Sbjct: 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN--QLASLPALPSELCKLWAYNN 171

Query: 584 --TTLP-LPACLASLMIGNFPN-LERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSL 639
             T+LP LP+ L  L + +  N L  L +   +L  L         +L   P   LPS L
Sbjct: 172 QLTSLPMLPSGLQELSVSD--NQLASLPTLPSELYKLWAYNN----RLTSLPA--LPSGL 223

Query: 640 LQLYIGGCPL 649
            +L + G  L
Sbjct: 224 KELIVSGNRL 233

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 69/378 (18%), Positives = 101/378 (26%), Gaps = 102/378 (26%)

Query: 199 LKPRIPKLEEL------------EINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQ 246
           L    P+L  L                + E +        L      L +L I    +L 
Sbjct: 76  LPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLT 134

Query: 247 SLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP 306
           SL                  L+ + + D Q L  LP  P  L  L     Y    L S P
Sbjct: 135 SLPVLPPG------------LQELSVSDNQ-LASLPALPSELCKLW---AYNN-QLTSLP 177

Query: 307 EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWT 366
              LPS L+++ + +   L SLP        S L  L  +  N LT      LP      
Sbjct: 178 M--LPSGLQELSVSDNQ-LASLPT-----LPSELYKLWAY-NNRLT-----SLPALP--- 220

Query: 367 LTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 426
                             S L+ L +S                 L SL    LP  LK L
Sbjct: 221 ------------------SGLKELIVSGNR--------------LTSL--PVLPSELKEL 246

Query: 427 DVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFP 486
            V     L S+         L ++S+     L  LP  L +L     + +          
Sbjct: 247 MVSGNR-LTSLPMLPSG---LLSLSVYRN-QLTRLPESLIHLSSETTVNLEGN------- 294

Query: 487 QGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRL 546
                   L+   +   + +   P     +            E  +L         L   
Sbjct: 295 -------PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL--HLAAADWLVPA 345

Query: 547 EIIDNKKIWKFSSLRQLT 564
              +     ++    Q  
Sbjct: 346 REGEPAPADRWHMFGQED 363

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 55/259 (21%)

Query: 418 NLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLKILPSG-LHNLRQLQEIG 475
            +P + + L++   + ++ I      +   LE + +    +++ +  G  + L  L  + 
Sbjct: 72  GIPSNTRYLNL-MENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLE 129

Query: 476 IWECENLVSFPQG---GLPCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQLTIGEGGELP 531
           +++   L   P G    L   KL  L +     ++ +P    + + SL +L +GE  +L 
Sbjct: 130 LFDN-WLTVIPSGAFEYLS--KLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 532 SLEED--DGLPTNLHRLEIIDNK--KIWKFSSLRQLTISGCDDDMVSFPPEDIRLR---- 583
            + E   +GL  NL  L +       +   + L  L              E++ +     
Sbjct: 186 YISEGAFEGLF-NLKYLNLGMCNIKDMPNLTPLVGL--------------EELEMSGNHF 230

Query: 584 TTLPLPACLASLMIGNFPNLERLS------SSI-----VDLQNLTHLELEDCPKLKYFPE 632
             +               +L++L       S I       L +L  L L     L   P 
Sbjct: 231 PEIR------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH 283

Query: 633 KGLPS--SLLQLYIGGCPL 649
                   L++L++   P 
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 76/519 (14%), Positives = 142/519 (27%), Gaps = 123/519 (23%)

Query: 109 VERFPKLRELHILRCSKLK-----------------GTFPEHLPALEMLVIEGC----EE 147
           + RFPK+R + +                                 LE + ++      + 
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121

Query: 148 LLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE 207
           L +   S  +    ++  C+                      S     A  +      L+
Sbjct: 122 LELIAKSFKNFKVLVLSSCEGF--------------------STDGLAA--IAATCRNLK 159

Query: 208 ELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCIL 267
           EL++ +           +       SL  L I+      S  A E      +L      L
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE------RLVTRCPNL 213

Query: 268 EYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKS 327
           + + L     L KL         L E+   G ++ V     +  S      +  C  L+ 
Sbjct: 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA----LSGCKELRC 269

Query: 328 LPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL 387
           L   W         +    +C+ LT +       +L +       +              
Sbjct: 270 LSGFWDAVPAYLPAVYS--VCSRLTTL-------NLSYATVQSYDLVK------------ 308

Query: 388 EGLHISRCPSLTCIFSKNELPATLESLE-VGNLPPSLKSLDVWSCSELESIAERLDNNTS 446
               + +CP L  ++  + +      LE + +    L+ L V+                 
Sbjct: 309 ---LLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 447 LETISISECENLKILPSG------------LHNLRQLQEIGIWECENLVSFPQGGLP--- 491
           L ++S+  C  L+ +                 N   +    +   E          P   
Sbjct: 364 LVSVSMG-CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422

Query: 492 --------CAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLP--- 540
                   C  L RL +S     +V          ++ L++   G+      D G+    
Sbjct: 423 GFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDS-----DLGMHHVL 477

Query: 541 ---TNLHRLEIIDNKKI--------WKFSSLRQLTISGC 568
               +L +LEI D             K  ++R L +S C
Sbjct: 478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 72/471 (15%), Positives = 135/471 (28%), Gaps = 89/471 (18%)

Query: 202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLC 261
           R PK+  +E+             +     +        +S   L+ +             
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI------------- 110

Query: 262 QLSCILEYIDLRDCQ----DLVKLPQSPLSLSSLREIEIYGCSSL--VSFPEVALP-SKL 314
                     L+        L  + +   S  + + + +  C          +A     L
Sbjct: 111 ---------RLKRMVVTDDCLELIAK---SFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 315 KKIEIRECDALKSLPEAW--MCDTNSSLEILEIWICNSLTYIAGVQL----PPSLKWTLT 368
           K++++RE D             DT +SL  L I    S    + ++      P+LK +L 
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK-SLK 217

Query: 369 VE--EGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 426
           +     ++  ++  +    L E L      +       + L   L           L+ L
Sbjct: 218 LNRAVPLEKLATLLQRAPQLEE-LGTGGYTAEVRPDVYSGLSVALSGC------KELRCL 270

Query: 427 DVWSCSELESIAERLDNNTSLETISISEC----ENLKILPSGLHNLRQLQEIGIWECENL 482
             +  +    +       + L T+++S       +L  L      L++L  +   E   L
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

Query: 483 VSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE------- 535
                    C  L  L +   +   + P        L  +++G     P LE        
Sbjct: 331 EVLAST---CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG----CPKLESVLYFCRQ 383

Query: 536 --DDGL---PTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPA 590
             +  L     N   +       I +  +   LT+   D    +       LR  L L  
Sbjct: 384 MTNAALITIARNRPNMTRFRLCII-EPKAPDYLTLEPLDIGFGAIVEHCKDLR-RLSLSG 441

Query: 591 CL----ASLMIGNFPNLERLSSSIVDL------------QNLTHLELEDCP 625
            L       +      +E LS +                 +L  LE+ DCP
Sbjct: 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 38/272 (13%), Positives = 84/272 (30%), Gaps = 47/272 (17%)

Query: 270 IDLRDCQDLVKLPQSPLSLSSLREIEIYGC-----SSLVSFPEVALPSKLKKIEIRECDA 324
           + + +C  +            +R +E+ G       +LV            +        
Sbjct: 48  VFIGNCYAVS-PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106

Query: 325 LKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTV-EEGIQSSSSSRRYT 383
           L+ +    M  T+  LE++      +   +        L        +G+ + +++    
Sbjct: 107 LEEIRLKRMVVTDDCLELI-AKSFKNFKVL-------VLSSCEGFSTDGLAAIAAT---- 154

Query: 384 SSLLEGLHISRCPSLTCIFSKNELPATLESL-EVGNLPPSLKSLDVWSCSE------LES 436
              L+ L +            +    +   L    +   SL SL++   +       LE 
Sbjct: 155 CRNLKELDLRES---------DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205

Query: 437 IAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT 496
           +  R     +L+++ ++    L+ L + L    QL+E+G       V           L+
Sbjct: 206 LVTRC---PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

Query: 497 RLE----ISYCKR-----LQVLPKGLHNLTSL 519
             +    +S         L  +      LT+L
Sbjct: 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 37/277 (13%)

Query: 393 SRCPSL-TCIFSKNELPATLESLEV--GNLPPSLKSLDVWSCSELESIAER-LDNNTSLE 448
           + CP    C      +    +        +P   + LD    + ++++ +    +   LE
Sbjct: 1   TGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLD-LGKNRIKTLNQDEFASFPHLE 59

Query: 449 TISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG---GLPCAKLTRLEISYCKR 505
            + ++E     + P   +NL  L+ +G+     L   P G   GL    LT+L+IS   +
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLS--NLTKLDISEN-K 115

Query: 506 LQVLPKGL-HNLTSLQQLTIGEGGELPSLEED--DGLPTNLHRLEIIDNK--KI-----W 555
           + +L   +  +L +L+ L +G   +L  +      GL  +L +L +       I      
Sbjct: 116 IVILLDYMFQDLYNLKSLEVG-DNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALS 173

Query: 556 KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQN 615
               L  L +              IR  +   L   L  L I ++P L+ ++ + +   N
Sbjct: 174 HLHGLIVLRLRHL-------NINAIRDYSFKRLYR-LKVLEISHWPYLDTMTPNCLYGLN 225

Query: 616 LTHLELEDCPKLKYFPE---KGLPSSLLQLYIGGCPL 649
           LT L +  C  L   P    + L   L  L +   P+
Sbjct: 226 LTSLSITHC-NLTAVPYLAVRHLV-YLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 12/137 (8%)

Query: 421 PSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSG-LHNLRQLQEIGIWEC 479
             LK L++     L+++        +L ++SI+ C NL  +P   + +L  L+ + +   
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNL--S 256

Query: 480 ENLVSFPQGGL--PCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQLTIGEGGELPSLEED 536
            N +S  +G +     +L  +++   + L V+       L  L+ L +  G +L +LEE 
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNV-SGNQLTTLEES 314

Query: 537 --DGLPTNLHRLEIIDN 551
               +  NL  L +  N
Sbjct: 315 VFHSVG-NLETLILDSN 330

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 44/259 (16%), Positives = 98/259 (37%), Gaps = 55/259 (21%)

Query: 418 NLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLKILPSG-LHNLRQLQEIG 475
            +  + + L++   ++++ I      +   LE + +S   +++ +  G  + L  L  + 
Sbjct: 61  GISTNTRLLNL-HENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLE 118

Query: 476 IWECENLVSFPQG---GLPCAKLTRLEISYCKRLQVLPKGL-HNLTSLQQLTIGEGGELP 531
           +++   L + P G    L   KL  L +     ++ +P    + + SL++L +GE   L 
Sbjct: 119 LFDN-RLTTIPNGAFVYLS--KLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 532 SLEED--DGLPTNLHRLEIIDNK--KIWKFSSLRQLTISGCDDDMVSFPPEDIRLR---- 583
            + E   +GL  NL  L +      +I   + L +L              +++ L     
Sbjct: 175 YISEGAFEGLS-NLRYLNLAMCNLREIPNLTPLIKL--------------DELDLSGNHL 219

Query: 584 TTLPLPACLASLMIGNFPNLERLS-----------SSIVDLQNLTHLELEDCPKLKYFPE 632
           + +  P     L      +L++L            ++  +LQ+L  + L     L   P 
Sbjct: 220 SAIR-PGSFQGL-----MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH 272

Query: 633 KGLPS--SLLQLYIGGCPL 649
                   L ++++   P 
Sbjct: 273 DLFTPLHHLERIHLHHNPW 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 80/478 (16%), Positives = 144/478 (30%), Gaps = 105/478 (21%)

Query: 204 PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL 263
             L  L++        I+  H +  Q    L  L +T+   L  +        +  L   
Sbjct: 57  INLTFLDLTR----CQIYWIHEDTFQSQHRLDTLVLTAN-PLIFM-------AETALSGP 104

Query: 264 SCILEYIDLRDCQDLVKLPQSPLS-LSSLREIEIYGCSSLVSFPEVALP--SKLKKIEIR 320
              L+++       +  +   PL    +L  + +     + S          KLK ++ +
Sbjct: 105 K-ALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQ 161

Query: 321 ECDALKSLPEAWMCDTNSSLEILEIWI-CNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSS 379
              A+  L +  M         L + +  N +  I      P    +   +      + +
Sbjct: 162 NN-AIHYLSKEDMSSL-QQATNLSLNLNGNDIAGI-----EPGAFDSAVFQSLNFGGTQN 214

Query: 380 RRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAE 439
                  L+   I      T  F   +      ++  G    S++S+++       +I+ 
Sbjct: 215 LLVIFKGLKNSTIQSLWLGT--FEDMDDEDISPAVFEGLCEMSVESINL-QKHYFFNISS 271

Query: 440 R-LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRL 498
                 + L+ + ++   +L  LPSGL  L  L++                        L
Sbjct: 272 NTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKK------------------------L 306

Query: 499 EISYCKRLQVLPKG-LHNLTSLQQL---------TIGEG--GELPSLEEDDGLPTNLHRL 546
            +S   + + L +    N  SL  L          +G G    L +L E D L  +    
Sbjct: 307 VLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD-LSHDDIET 364

Query: 547 EIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL 606
               N ++   S L+ L +S    + +S   E                      P LE L
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYN--EPLSLKTE-----------------AFKECPQLELL 405

Query: 607 S------------SSIVDLQNLTHLELEDCPKLKYFPE---KGLPSSLLQLYIGGCPL 649
                        S   +L  L  L L     L    E    GLP +L  L + G   
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLP-ALQHLNLQGNHF 461

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 35/252 (13%), Positives = 77/252 (30%), Gaps = 33/252 (13%)

Query: 417 GNLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLKILPSGLHNLRQLQEIG 475
           G LP S + L+  S + L +I         +L  + ++ C+   I      +  +L  + 
Sbjct: 29  GTLPNSTECLEF-SFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 476 IWECENLVSFPQGGL-PCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQL----------T 523
           +     L+   +  L     L  L       +  +    LHN  +L+ L           
Sbjct: 88  LTAN-PLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 524 IGEGGELPSLEEDDGLPTNLH--RLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIR 581
           + +G     L+    L  +     +  +  + +        L+++   +D+    P    
Sbjct: 146 LPKGFPTEKLKV---L--DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 582 LRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPS---- 637
                 L       ++  F  L+  +     +Q+L     ED    +             
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNST-----IQSLWLGTFEDM-DDEDISPAVFEGLCEM 254

Query: 638 SLLQLYIGGCPL 649
           S+  + +     
Sbjct: 255 SVESINLQKHYF 266

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 41/276 (14%), Positives = 78/276 (28%), Gaps = 48/276 (17%)

Query: 436 SIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGL-PCAK 494
           +I E   N    +   +++    + L S   +   ++E+ +     L       L P  K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 495 LTRLEISYCKRLQVLPKGLHNLTSLQQLT-----IGEGGELPSLEE-----------DDG 538
           L  L +S    L      L +L++L+ L      + E    PS+E               
Sbjct: 60  LELLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 539 LPTNLHRLEIIDNK-------KIWKFSSLRQLTISGCDDDMVSFPPEDIRLR-------- 583
                  + + +NK            S ++ L +   + D V+F                
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 584 ----TTLPLPACLASLMI----GNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-G 634
                 +      A L       N   L  +         +T + L +  KL    +   
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALR 234

Query: 635 LPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPK 670
              +L    + G         +D       +  + K
Sbjct: 235 FSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAK 269

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 48/273 (17%), Positives = 97/273 (35%), Gaps = 50/273 (18%)

Query: 392 ISRCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETI 450
           I    +L  +  + N++   +  L   NL   L +L + +  ++  I+  L N T+L  +
Sbjct: 62  IEYLTNLEYLNLNGNQI-TDISPL--SNLV-KLTNLYIGTN-KITDISA-LQNLTNLREL 115

Query: 451 SISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLP 510
            ++E  N+  +   L NL ++  + +    + +S          L  L ++  K ++ + 
Sbjct: 116 YLNED-NISDISP-LANLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESK-VKDVT 171

Query: 511 KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK-----KIWKFSSLRQLTI 565
             + NLT L  L++    ++  +     L T+LH      N+      +   + L  L I
Sbjct: 172 -PIANLTDLYSLSLN-YNQIEDISPLASL-TSLHYFTAYVNQITDITPVANMTRLNSLKI 228

Query: 566 SGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLS---------SSIVDLQNL 616
                          ++    PL          N   L  L          +++ DL  L
Sbjct: 229 GNN------------KITDLSPL---------ANLSQLTWLEIGTNQISDINAVKDLTKL 267

Query: 617 THLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL 649
             L +    ++         S L  L++    L
Sbjct: 268 KMLNVGSN-QISDISVLNNLSQLNSLFLNNNQL 299

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 39/201 (19%), Positives = 70/201 (34%), Gaps = 48/201 (23%)

Query: 441 LDNNTSLETISISECENLKIL---------PSGLHNLRQLQEIGIWECENLVSFPQGGLP 491
           L   +  + ++  E E++  L           G+  L  L+ + +   +     P   L 
Sbjct: 29  LQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLV 88

Query: 492 CAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDN 551
             KLT L I   K +  +   L NLT+L++L +     +  +     L T ++ L +  N
Sbjct: 89  --KLTNLYIGTNK-ITDIS-ALQNLTNLRELYL-NEDNISDISPLANL-TKMYSLNLGAN 142

Query: 552 KKI------WKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLER 605
             +         + L  LT++              +++   P         I N  +L  
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTES------------KVKDVTP---------IANLTDLYS 181

Query: 606 LS------SSIVDLQNLTHLE 620
           LS        I  L +LT L 
Sbjct: 182 LSLNYNQIEDISPLASLTSLH 202

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 47/357 (13%), Positives = 121/357 (33%), Gaps = 67/357 (18%)

Query: 211 INDMKEQTYIWKSHNEL--LQDICSLKRLT--------ITSCPKLQSLVAEEEKDQQQQL 260
             +++  T +  +  ++  +Q I  L  L         IT    L +LV           
Sbjct: 40  QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK---------- 89

Query: 261 CQLSCILEYIDLRDCQDLVKLPQSPLS-LSSLREIEIYGCSSLVSFPEVALPSKLKKIEI 319
                 L  + +   + +  +    L  L++LRE+ +   + +     +A  +K+  + +
Sbjct: 90  ------LTNLYIGTNK-ITDIS--ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNL 139

Query: 320 RECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEE-GIQSSSS 378
                L  L         + L  L +   + +  +  +     L  +L++    I+  S 
Sbjct: 140 GANHNLSDLSPL---SNMTGLNYLTVT-ESKVKDVTPIANLTDLY-SLSLNYNQIEDISP 194

Query: 379 SRRYTSSLLEGLHISRCPSLTCIF-SKNELPATLESLEVGNLPPSLKSLDVWSCSELESI 437
                        ++   SL       N++   +  +   N+   L SL + +  ++  +
Sbjct: 195 -------------LASLTSLHYFTAYVNQI-TDITPV--ANMT-RLNSLKIGNN-KITDL 236

Query: 438 AERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWEC--ENLVSFPQGGLPCAKL 495
           +  L N + L  + I     +  +   + +L +L+ + +      ++       L   +L
Sbjct: 237 SP-LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSNQISDISVL--NNLS--QL 289

Query: 496 TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK 552
             L ++  +      + +  LT+L  L +     +  +     L + +   +  +  
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFL-SQNHITDIRPLASL-SKMDSADFANQV 344

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 63/345 (18%), Positives = 104/345 (30%), Gaps = 74/345 (21%)

Query: 333 MCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHI 392
           M   N++  + +    N+++                  E       +R    SLL+   I
Sbjct: 4   MLPINNNFSLSQNSFYNTIS-----GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI 58

Query: 393 SRCPSLTCIFSKN---ELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLET 449
           ++   L    ++     LP         NLPP +  L++ + + L S+ E      SLE 
Sbjct: 59  NQFSELQL--NRLNLSSLPD--------NLPPQITVLEI-TQNALISLPELP---ASLEY 104

Query: 450 ISISECENLKILPSGLHNLRQLQEIGIWECEN--LVSFPQGGLPCAKLTRLEISYCKRLQ 507
           +   +   L  LP    +L+ L        +N  L   P+     A L  +      +L 
Sbjct: 105 LDACDN-RLSTLPELPASLKHLD------VDNNQLTMLPEL---PALLEYINADNN-QLT 153

Query: 508 VLPKGLHNLTSLQ----QLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQL 563
           +LP+   +L  L     QLT      LP L      P +L  L++  N           L
Sbjct: 154 MLPELPTSLEVLSVRNNQLT-----FLPEL------PESLEALDVSTN----------LL 192

Query: 564 TISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELED 623
                     S P   +R                     +  +  +I+ L     + LED
Sbjct: 193 E---------SLPAVPVRN---HHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILED 239

Query: 624 CPKLKYFPEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHI 668
            P L     + L     Q    G  +               L   
Sbjct: 240 NP-LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 63/351 (17%), Positives = 107/351 (30%), Gaps = 81/351 (23%)

Query: 278 LVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTN 337
            V L +  L ++   E+++   + L S P+  LP ++  +EI +  AL SLPE       
Sbjct: 49  AVSLLKECL-INQFSELQLNRLN-LSSLPD-NLPPQITVLEITQN-ALISLPELP----- 99

Query: 338 SSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPS 397
           +SLE L+    N L+      LP                        + L+ L +     
Sbjct: 100 ASLEYLDAC-DNRLS-----TLPELP---------------------ASLKHLDVDNNQ- 131

Query: 398 LTCIFSKNELPATLESLEVGN-----LPPSLKSLDVWSCSE--LESIAERLDNNTSLETI 450
           LT +    ELPA LE +   N     LP    SL+V S     L  + E  ++   LE +
Sbjct: 132 LTML---PELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPES---LEAL 185

Query: 451 SISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLP 510
            +S    L+ LP+        +E                               R+  +P
Sbjct: 186 DVSTNL-LESLPAVPVRNHHSEET--------------------EIFFRCREN-RITHIP 223

Query: 511 KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKI-WKFSSLRQLTISGCD 569
           + + +L     + + E   L S   +                           L     D
Sbjct: 224 ENILSLDPTCTIIL-EDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLAD 282

Query: 570 DDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLE 620
                FP       + +            +  +    S+ +  L +     
Sbjct: 283 AVTAWFPENKQSDVSQIW-------HAFEHEEHANTFSAFLDRLSDTVSAR 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 42/308 (13%), Positives = 91/308 (29%), Gaps = 83/308 (26%)

Query: 392 ISRCPSLTCIFSKNELPATLESLEVGNLP------------PSLKSLDVWSCSELESI-A 438
             R P   CI S  +       + +                 + K +   + + +  + A
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPA 68

Query: 439 ERLDNNTSLETISISECENLKILPSG-LHNLRQLQEIGIWECENLVSFPQG---GLPCAK 494
             LD+   +E +++++   ++ + +        +Q++ +     +   P      +P   
Sbjct: 69  ALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVP--L 124

Query: 495 LTRLEISYCKRLQVLPKGL-HNLTSLQQL--------TIGEG--GELPSLEE-------- 535
           LT L +     L  LP+G+ HN   L  L         I +       SL+         
Sbjct: 125 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 536 ---DDGLPTNLHRLEIIDNK--KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPA 590
              D  L  +L    +  N    +    ++ +L  S                        
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS--------------------- 222

Query: 591 CLASLMIGNFPNLERLS---------SSIVDLQNLTHLELEDCPKLKYFPE---KGLPSS 638
            +  +       L  L          + +++   L  ++L    +L+         +   
Sbjct: 223 -INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQ-R 279

Query: 639 LLQLYIGG 646
           L +LYI  
Sbjct: 280 LERLYISN 287

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 57/378 (15%), Positives = 117/378 (30%), Gaps = 60/378 (15%)

Query: 267 LEYIDLRDCQDLVKLPQSPLS-LSSLREIEIYGCSSLVSFPEVALP--SKLKKIEIRECD 323
           ++ + +     +  LP      +  L  + +     L S P        KL  + +    
Sbjct: 101 IQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN- 157

Query: 324 ALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYT 383
            L+ + +     T +SL+ L++   N LT++  + L PSL         + + +      
Sbjct: 158 NLERIEDDTFQAT-TSLQNLQL-SSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIA-- 212

Query: 384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDN 443
              +E L  S                 +  +        L  L +   + L   A  L N
Sbjct: 213 ---VEELDASHNS--------------INVVRGPVNV-ELTILKL-QHNNLTDTAW-LLN 252

Query: 444 NTSLETISISECENLKILPSG-LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY 502
              L  + +S    L+ +       +++L+ + I     LV+    G P   L  L++S+
Sbjct: 253 YPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYI-SNNRLVALNLYGQPIPTLKVLDLSH 310

Query: 503 CKRLQVLPKGLHNLTSLQQLTIG-------EGGELPSLEE------------DDGLPTNL 543
              L  + +       L+ L +        +     +L+                L  N+
Sbjct: 311 N-HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNV 369

Query: 544 HRLEIIDNKKIWK--FSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFP 601
            R  + D  +  K  +     L     D   +    + I L + +           G   
Sbjct: 370 ARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV----EKVQRAQGRCS 425

Query: 602 NLERLSSSIVDLQNLTHL 619
             + ++S       +T  
Sbjct: 426 ATDTINSVQSLSHYITQQ 443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 32/205 (15%), Positives = 63/205 (30%), Gaps = 41/205 (20%)

Query: 479 CENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQLTIGEGGELPSLEED- 536
           C+++   P   LP      L++     L+ +P     NL ++ ++ +     L  LE   
Sbjct: 20  CKDIQRIP--SLP-PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75

Query: 537 -DGLPTNLHRLEIIDNKKI--------WKFSSLRQLTISGCD----DDMVSFPPEDIRLR 583
              L   +  +EI + + +         +   L+ L I         D+      DI   
Sbjct: 76  FYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI 134

Query: 584 ---------TTLP------LPACLASLMI-GNFPNLERLSSSIVDLQNLTHLELEDCPKL 627
                    T++P      L     +L +  N      +     +   L  + L     L
Sbjct: 135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNN--GFTSVQGYAFNGTKLDAVYLNKNKYL 192

Query: 628 KYFPE---KGLPSSLLQLYIGGCPL 649
               +    G+ S    L +    +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 6/139 (4%)

Query: 421 PSLKSLDVWSCSELESIAERL-DNNTSLETISISECENLKILPSG-LHNLRQLQEIGIWE 478
           P++  + V     L+ +      N + +  I I    NL  +    L  L  L+ +GI+ 
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 479 CENLVSFPQGGL--PCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQLTIGEGGELPSLEE 535
              L  FP             LEI+    +  +P      L +             S++ 
Sbjct: 115 T-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173

Query: 536 DDGLPTNLHRLEIIDNKKI 554
                T L  + +  NK +
Sbjct: 174 YAFNGTKLDAVYLNKNKYL 192

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 71/400 (17%), Positives = 119/400 (29%), Gaps = 65/400 (16%)

Query: 204 PKLEELEINDMKEQTYIWKSHNELLQ--DICSLKRLTITSCPKLQSLVAEEEKDQQQQLC 261
            KL EL +      + I K+  + L    +  L          L+      E    + LC
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF----EPSIMEGLC 259

Query: 262 QLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRE 321
            ++  ++   L    D          L+++  + + G S +    +V    K + + I  
Sbjct: 260 DVT--IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIR 316

Query: 322 CDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVE----EGIQSSS 377
           C  LK  P   +      L+ L +   N  +        PSL + L +           S
Sbjct: 317 CQ-LKQFPTLDL----PFLKSLTL-TMNKGSISFKKVALPSLSY-LDLSRNALSFSGCCS 369

Query: 378 SSRRYTSSLLEGLHISR------------CPSLTCI-FSKNELPATLESLEVGNLPPSLK 424
            S   T+SL   L +S                L  + F  + L    E     +L   L 
Sbjct: 370 YSDLGTNSLRH-LDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-KLL 427

Query: 425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSG-LHNLRQLQEIGIWECENLV 483
            LD+   +            TSL T+ ++         S    N   L  + + +C  L 
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLE 486

Query: 484 SFPQGGLP-CAKLTRLEISYCKRLQVLPKG-LHNLTSLQQLTIGEGGELPSLEEDDGLPT 541
               G      +L  L +S+   L  L     + L SL  L                   
Sbjct: 487 QISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTL------------------- 526

Query: 542 NLH--RLEIIDNKKIWKFSSLRQLTISG----CDDDMVSF 575
           +    R+E           SL    ++     C  +   F
Sbjct: 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKF 566

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 73/414 (17%), Positives = 135/414 (32%), Gaps = 79/414 (19%)

Query: 267 LEYIDLRDCQDLVKLPQSPLS-LSSLREIEIYGCSSLVSFPEVAL--PSKLKKIEIRECD 323
           L+++DL  C+ +  +       L  L  + + G   + SF   +    + L+ +   E  
Sbjct: 58  LQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK 115

Query: 324 ALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYT 383
            L SL    +     +L+ L +    +  +I   +LP              S+ ++    
Sbjct: 116 -LASLESFPIGQ-LITLKKLNV----AHNFIHSCKLPAYF-----------SNLTN---- 154

Query: 384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDN 443
              L  + +S    +  I         L+ L     P    SLD+ S + ++ I ++   
Sbjct: 155 ---LVHVDLSYN-YIQTI-----TVNDLQFLR--ENPQVNLSLDM-SLNPIDFIQDQAFQ 202

Query: 444 NTSLETISISECENL-KILPSGLHNLRQLQEIGIWECE-----NLVSFPQG---GLPCAK 494
              L  +++    N   I+ + L NL  L    +   E     NL  F      GL    
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 495 LTRLEISYCKRLQVLPKGLHNLTSLQQL--------TIGEGGELPSLEEDD-------GL 539
           +    ++Y           H L ++  +         + +  +    +            
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 540 P----TNLHRLEIIDNK-----KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPA 590
           P      L  L +  NK     K     SL  L +S      +SF               
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN---ALSFSGCCSYSDLGTNS-- 377

Query: 591 CLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYI 644
            L  L + +F     +S++ + L+ L HL+ +    LK   E     SL +L  
Sbjct: 378 -LRHLDL-SFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLY 428

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 43/262 (16%), Positives = 75/262 (28%), Gaps = 21/262 (8%)

Query: 403 SKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP 462
           S+ E+  T+E      L   L +L +                TSLE +   E   L  L 
Sbjct: 64  SRCEI-ETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLE 120

Query: 463 SG-LHNLRQLQEIGIWECENLVSFPQGGL--PCAKLTRLEISYCKRLQVLPKG-LHNLTS 518
           S  +  L  L+++ +     + S            L  +++SY   +Q +    L  L  
Sbjct: 121 SFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRE 178

Query: 519 LQQLTIG---EGGELPSLEEDDGLPTNLHRLEIIDNKKIWK-----FSSLRQLTISGCDD 570
             Q+ +        +  +++       LH L +  N            +L  L +     
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 571 DMVS--FPPEDIRLRTTLPLPACLASLMIGNFPNLERLS-SSIVDLQNLTHLELEDCPKL 627
                    E         L           + N           L N++ + L     +
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SI 297

Query: 628 KYFPEKGLPSSLLQLYIGGCPL 649
           KY  +         L I  C L
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQL 319

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 7e-07
 Identities = 78/502 (15%), Positives = 152/502 (30%), Gaps = 102/502 (20%)

Query: 204 PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL 263
           P L  L++   K    I+  H +  Q +  L  L +  C  L   V ++          L
Sbjct: 73  PNLRILDLGSSK----IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDG-----YFRNL 122

Query: 264 SCILEYIDLRDCQDLVKLPQSPL--SLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRE 321
              L  +DL   Q +  L   P    L+SL+ I+                    +I +  
Sbjct: 123 KA-LTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN----------------QIFLVC 164

Query: 322 CDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGV--QLPPSLKWTLTVEEGIQSSSSS 379
              L+ L          +L    +   +  + ++    +     +  +     +  +  +
Sbjct: 165 EHELEPL-------QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 380 RRYTSSLLEGLHISRCPSLTCI-------FSKNELPATLESLEVGNLPPSLKSLDVWSCS 432
              T +    +  S+  SL          F  + +    ++   G    S++ LD+ S  
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL-SHG 276

Query: 433 ELESIAER-LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG--- 488
            + S+  R  +    L+ ++++  +  KI     + L  LQ + +     L         
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFY 335

Query: 489 GLPCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQLT-----IGEGGELPSLEEDD----- 537
           GLP  K+  +++     + ++       L  LQ L      +     +PS+ +       
Sbjct: 336 GLP--KVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392

Query: 538 ----------GLPTNLHRLEIIDNKKIWKFSSLRQLT--------ISGCDDDMV-SFPPE 578
                         +L    + +   ++    +  L          S C  D   S  P 
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452

Query: 579 DIRL-----RTTLPLPACLASLMIGNFPNLERL-----------SSSIVDLQNLTHLELE 622
             +L        L     L   +     +L+ L                 L  L  L L 
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 623 DCPKLKYFPEKGLPSSLLQLYI 644
              +L       LP++L  L I
Sbjct: 513 SN-RLTVLSHNDLPANLEILDI 533

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 90/555 (16%), Positives = 171/555 (30%), Gaps = 85/555 (15%)

Query: 113 PKLRELHI----LRCSKLKGTFPEHLPALEMLVIEGCE----ELLVSVSSLPSLCKFIIG 164
             L EL +    L  + LK  +  +L AL  L +   +     L  S   L SL      
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 165 GCK-KIVWESATGHLGSQNSVVCRDTSNQ-------VFLAGPLKPRIPKLEELEINDMKE 216
             +  +V E     L  +        +N         +       R   LE L+++    
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 217 QTYIWKSHNELLQDICSLKRLTITSCPKLQSL------VAEEEKDQQQQLCQLSCILEYI 270
              I          I   +  ++     +         + + +++    L + S  + ++
Sbjct: 217 TVDI---TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRHL 271

Query: 271 DLRDCQDLVKLPQSPLS-LSSLREIEIYGCSSLVSFPEVALP--SKLKKIEIRECDALKS 327
           DL     +  L       L  L+ + +     +    + A      L+ + +     L  
Sbjct: 272 DLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL-LGE 328

Query: 328 LPEAWMCDTNSSLEILEIWICNSLTYIAGVQLP--PSLKWTLTVEEGIQSSSSSRRYTSS 385
           L  +        +  +++   N +  I          L+ TL +               +
Sbjct: 329 LYSSNFYG-LPKVAYIDL-QKNHIAIIQDQTFKFLEKLQ-TLDL-------------RDN 372

Query: 386 LLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAER--LDN 443
            L    I   PS+  IF       TL  +       +   + + S + LE++     L  
Sbjct: 373 ALT--TIHFIPSIPDIFLSGNKLVTLPKI-----NLTANLIHL-SENRLENLDILYFLLR 424

Query: 444 NTSLETISISECENLKILPSGL-HNLRQLQE-------IGIWECENLVSFPQGGLPCAKL 495
              L+ + +++                 L++       + +     L      GL    L
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS--HL 482

Query: 496 TRLEISYCKRLQVLPKG-LHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK-- 552
             L +++   L  LP G   +LT+L+ L++     L  L  +D LP NL  L+I  N+  
Sbjct: 483 QVLYLNHN-YLNSLPPGVFSHLTALRGLSL-NSNRLTVLSHND-LPANLEILDISRNQLL 539

Query: 553 --KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSI 610
                 F SL  L I+            +  L T +         + G   ++  +    
Sbjct: 540 APNPDVFVSLSVLDITHNKFI------CECELSTFINWLNHTNVTIAGPPADIYCVYPDS 593

Query: 611 VDLQNLTHLELEDCP 625
               +L  L  E C 
Sbjct: 594 FSGVSLFSLSTEGCD 608

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 75/477 (15%), Positives = 148/477 (31%), Gaps = 88/477 (18%)

Query: 267 LEYIDLRDCQDLVKLPQSPLS-LSSLREIEIYGCSSLVSFPEVALPS--KLKKIEIRECD 323
            E + L     +  +  S    L  L+ +E+    + ++  + A  +   L+ +++    
Sbjct: 26  TERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 324 ALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYT 383
            +  L           L  L ++ C     ++   L       L     +     S+   
Sbjct: 85  -IYFLHPDAFQG-LFHLFELRLYFCG----LSDAVLKDGYFRNLK---ALTRLDLSKNQI 135

Query: 384 SSLLEGLHISRCPSLTCI-FSKNEL----PATLESLEVGNLPPSLKSLDVWSCSELESIA 438
            SL       +  SL  I FS N++       LE L+      +L    + + S    ++
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG----KTLSFFSLAANSLYSRVS 191

Query: 439 ERLDN------NTSLETISISECENLKILPSGLHN-LRQLQEIGIWECE----------N 481
                      N  LE + +S       +     N + + Q   +              N
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 482 LVSFPQG---GLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQL--------TIGEG--G 528
           +    Q    GL  + +  L++S+     +  +    L  L+ L         I +    
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

Query: 529 ELPSLEE-----------DDGLPTNLHRLEIID----------NKKIWKFSSLRQLTISG 567
            L +L+                   L ++  ID          ++       L+ L +  
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 568 CDDDMVSFPP--EDIRLR----TTLPLPACLASLMIGNFPNLERLS--SSIVDLQNLTHL 619
                + F P   DI L      TLP     A+L+  +   LE L     ++ + +L  L
Sbjct: 372 NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 620 ELEDCPKLKYFPEKGL---PSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKI 673
            L    +              SL QL++G   L   +   +    WD+   +  +++
Sbjct: 432 ILNQN-RFSSCSGDQTPSENPSLEQLFLGENML---QLAWETELCWDVFEGLSHLQV 484

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 14/154 (9%)

Query: 421 PSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECE 480
            SL  + + +   +  +   ++   +++ ++I+         + +  L  L+ + I   +
Sbjct: 44  NSLTYITL-ANINVTDL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99

Query: 481 --NLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDG 538
             +       GL    LT L+IS+      +   ++ L  +  + +   G +  +     
Sbjct: 100 VTSDKIPNLSGLT--SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

Query: 539 LPTNLHRLEIIDNK-----KIWKFSSLRQLTISG 567
           L   L  L I  +       I  F  L QL    
Sbjct: 158 L-PELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 63/414 (15%), Positives = 133/414 (32%), Gaps = 58/414 (14%)

Query: 267 LEYIDLRDCQDLVKLPQSPLS-LSSLREIEIYGCSSLVSFPEVALPS--KLKKIEIRECD 323
           L+ + + + +   ++ +   + L+SL E+EI    SL ++   +L S   +  + +   +
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 324 ALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYT 383
               L E    D  SS+  LE+    +L       LP     +   +   + S  +    
Sbjct: 184 -SAFLLEI-FADILSSVRYLEL-RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 384 SSL---------LEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSEL 434
           + L         L  +    C               +  L       +++ L +      
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYLF 299

Query: 435 ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEI-----GIWECENLVSFPQGG 489
             ++        ++ I++   +   +  S   +L+ L+ +      + E     S  +G 
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 490 LPCAKLTRLEISYCK--RLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE 547
            P   L  L +S      +Q   + L  L +L  L I        + +    P  +  L 
Sbjct: 360 WP--SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS-RNTFHPMPDSCQWPEKMRFLN 416

Query: 548 IIDNK--KIWK--FSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMI----GN 599
           +       +      +L  L +S               L +       L  L       N
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSNN------------NLDS---FSLFLPRLQELYISRN 461

Query: 600 FPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE---KGLPSSLLQLYIGGCPLI 650
              L+ L  + +    L  +++    +LK  P+     L  SL ++++   P  
Sbjct: 462 --KLKTLPDASL-FPVLLVMKISRN-QLKSVPDGIFDRLT-SLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 50/247 (20%), Positives = 81/247 (32%), Gaps = 21/247 (8%)

Query: 418 NLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLKILPSGLHNLRQLQEIGI 476
            L  ++KSLD+ S +++  I    L    +L+ + +       I     ++L  L+ + +
Sbjct: 23  GLTAAMKSLDL-SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 477 WECENLVSFPQGGL-PCAKLTRLEISYCKRLQVLPKG--LHNLTSLQQLTIGEGGELPSL 533
            +  +L S       P + L  L +      Q L       NLT+LQ L IG       +
Sbjct: 82  SDN-HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 534 EEDD--GLPTNLHRLEIIDNK--KIWK--FSSLRQLTISGCDDDMVSFPPEDI-----RL 582
              D  GL T+L+ LEI              S+R +          +F  E        +
Sbjct: 140 RRIDFAGL-TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQL 642
           R        LA       P  E  S   +         L D    +          L ++
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSP--MKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 643 YIGGCPL 649
               C L
Sbjct: 257 EFDDCTL 263

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 51/368 (13%), Positives = 121/368 (32%), Gaps = 62/368 (16%)

Query: 267 LEYIDLRDCQDLVKLPQSPLS-LSSLREIEIYGCSSLVSFPEVALPS--KLKKIEIRECD 323
           ++ +DL   + +  +    L   ++L+ + +     + +    A  S   L+ +++ +  
Sbjct: 28  MKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN- 84

Query: 324 ALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYT 383
            L SL  +W     SSL+ L +   N    +    L P+L                    
Sbjct: 85  HLSSLSSSW-FGPLSSLKYLNLM-GNPYQTLGVTSLFPNL-------------------- 122

Query: 384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAER-LD 442
            + L+ L I    + + I            L       SL  L++     L +   + L 
Sbjct: 123 -TNLQTLRIGNVETFSEI-----RRIDFAGL------TSLNELEI-KALSLRNYQSQSLK 169

Query: 443 NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAK-LTRLEIS 501
           +   +  +++   E+  +L      L  ++ + + +  NL  F    LP  +  + ++  
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKL 228

Query: 502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLR 561
             +   +  +  + L  L +  +    EL  +E DD     L      ++  + +   + 
Sbjct: 229 AFRGSVLTDESFNELLKLLRYIL----ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 562 QLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLEL 621
            +TI                L   L         +      ++R++     +  +     
Sbjct: 285 TVTIRRLHI-------PQFYLFYDLS-------TVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 622 EDCPKLKY 629
           +    L++
Sbjct: 331 QHLKSLEF 338

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 53/312 (16%), Positives = 107/312 (34%), Gaps = 33/312 (10%)

Query: 233 SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLR 292
           +L+ L ++S  K+QS+         + L Q+  +   +DL     +  +         L 
Sbjct: 150 NLEHLDLSSN-KIQSI----YCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLH 203

Query: 293 EIEIYGCSSLVSFPEVALPS-------KLKKIEIRECDALKSLPEAWMCD-TNSSLEILE 344
           ++ +      ++  +  +         +L   E R    L+   ++ +    N ++E   
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 345 I--WICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCP--SLTC 400
           +          I       ++     V   I+             + L +  C       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPT 321

Query: 401 IFSKNELPATLESLEVGNLP-----PSLKSLDVWSC--SELESIAERLDNNTSLETISIS 453
           +  K+    T  S + GN       PSL+ LD+     S     ++     TSL+ + +S
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 454 ECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGL--PCAKLTRLEISYCKRLQVLPK 511
               +  + S    L QL+ +      NL    +  +      L  L+IS+    +V   
Sbjct: 382 FN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN 438

Query: 512 G-LHNLTSLQQL 522
           G  + L+SL+ L
Sbjct: 439 GIFNGLSSLEVL 450

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 51/267 (19%), Positives = 86/267 (32%), Gaps = 73/267 (27%)

Query: 391 HISRCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLDVWSCS---ELESIAERLDNNTS 446
            +  C  L  +  S N L    +      L  SL+ LD+ + S            D    
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN-SLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 447 LETISISECENLK-ILPSGLHNLRQLQEIGIWECENLVSFPQGGLP----CAKLTRLEIS 501
           L+ ++IS    +   +         L+ + +    N       G+P    C+ L  L+IS
Sbjct: 180 LKHLAISGN-KISGDVDVS--RCVNLEFLDVSSN-NF----STGIPFLGDCSALQHLDIS 231

Query: 502 YCKRLQ-VLPKGLHNLTSLQQLTIGE---GGELPSLEEDDGLPTNLHRLEIID---NK-- 552
             K L     + +   T L+ L I      G +P        P  L  L+ +    NK  
Sbjct: 232 GNK-LSGDFSRAISTCTELKLLNISSNQFVGPIP--------PLPLKSLQYLSLAENKFT 282

Query: 553 -KI-----WKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL 606
            +I         +L  L +SG       F            +P        G+   LE L
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGN-----HF---------YGAVPPF-----FGSCSLLESL 323

Query: 607 S------------SSIVDLQNLTHLEL 621
           +             +++ ++ L  L+L
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 5e-05
 Identities = 67/418 (16%), Positives = 120/418 (28%), Gaps = 109/418 (26%)

Query: 270 IDLRDCQ---DLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALK 326
           IDL           +  S LSL+ L  + +       S       + L  +++       
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 327 SLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSL 386
            +       + S L+ L +                 L +   V  G++ +S         
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNT-------------LDFPGKVSGGLKLNS--------- 152

Query: 387 LEGLHISRCPSLT-CIFSKNELPATLESLEV---------GNLP----PSLKSLDVWSCS 432
           LE L +S   S++        L      L+          G++      +L+ LDV S +
Sbjct: 153 LEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211

Query: 433 ---ELESIAERLDNNTSLETISISECENLK-ILPSGLHNLRQLQEIGIWECENLV-SFPQ 487
               +  +     + ++L+ + IS    L       +    +L+ + I      V   P 
Sbjct: 212 FSTGIPFLG----DCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN-QFVGPIPP 265

Query: 488 GGLPCAKLTRLEISYCKRLQ-VLPKGL-HNLTSLQQLTIGE---GGELP-SLEEDDGLPT 541
             L    L  L ++  K     +P  L     +L  L +      G +P       G  +
Sbjct: 266 LPLK--SLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF----GSCS 318

Query: 542 NLHRLEIIDNK--------KIWKFSSLRQL-----TISGCDDDMVSFPPEDIRLRTTL-- 586
            L  L +  N          + K   L+ L       SG        P     L  +L  
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG------ELPESLTNLSASLLT 372

Query: 587 ----------PLPACLASLMIGNFPNLERLS-----------SSIVDLQNLTHLELED 623
                     P+     +L       L+ L             ++ +   L  L L  
Sbjct: 373 LDLSSNNFSGPIL---PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 65/351 (18%), Positives = 127/351 (36%), Gaps = 78/351 (22%)

Query: 267 LEYIDLRDCQDLV-KLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDAL 325
           L+++D+   + L     ++  + + L+ + I     +   P + L S L+ + + E    
Sbjct: 225 LQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFT 282

Query: 326 KSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSS 385
             +P+ ++     +L  L++   N      G  +PP    + ++ E +  SS++      
Sbjct: 283 GEIPD-FLSGACDTLTGLDLSG-NHFY---G-AVPPFF-GSCSLLESLALSSNN------ 329

Query: 386 LLEG----LHISRCPSLTCIF-SKNEL----PATLESLEVGNLPPSLKSLDVWSCSELE- 435
              G      + +   L  +  S NE     P +L      NL  SL +LD+ S +    
Sbjct: 330 -FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-----TNLSASLLTLDLSSNN-FSG 382

Query: 436 SIAERLDNN--TSLETISISECENLK-ILPSGLHNLRQLQEI-------------GIWEC 479
            I   L  N   +L+ + +         +P  L N  +L  +              +   
Sbjct: 383 PILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 480 ENLV-------SFPQGGLP-----CAKLTRLEISYCKRLQ-VLPKGLHNLTSLQQLTIGE 526
             L           +G +P        L  L + +   L   +P GL N T+L  +++  
Sbjct: 442 SKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSN 499

Query: 527 ---GGELPSLEEDDGLPTNLHRLEIIDNK-------KIWKFSSLRQLTISG 567
               GE+P      G   NL  L++ +N        ++    SL  L ++ 
Sbjct: 500 NRLTGEIPK---WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 61/424 (14%), Positives = 136/424 (32%), Gaps = 47/424 (11%)

Query: 267 LEYIDLRDCQ--DLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPS--KLKKIEIREC 322
           L+ + L + +   L        + SSL+++E+     +  F      +  +L  + +   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNV 205

Query: 323 DALKSLPEAW-MCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTV----EEGIQSSS 377
               SL E   +   N+S+  L +   + L+  +           LT+       +    
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLS-NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 378 SSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESI 437
           +        LE   +    ++  +FS +     L ++   NL  S     +   S  +  
Sbjct: 265 NDSFAWLPQLEYFFLEYN-NIQHLFSHS--LHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 438 AERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGI----WECENLVSFPQGGLPCA 493
                    LE +++ + +   I  +    L  L+ + +         L +     L  +
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 494 KLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK 553
            L  L ++  K  ++       L  L+ L +G                 + +   +  ++
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGL--------------NEIGQ--ELTGQE 425

Query: 554 IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN--FPNLERLSSSIV 611
                ++ ++ +S      +              +P+ L  LM+      N++   S   
Sbjct: 426 WRGLENIFEIYLSYN--KYLQLTRNSFA-----LVPS-LQRLMLRRVALKNVDSSPSPFQ 477

Query: 612 DLQNLTHLELEDCPKLKYFPEKGLPS--SLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIP 669
            L+NLT L+L +   +    +  L     L  L +    L       + G     L  + 
Sbjct: 478 PLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 670 KVKI 673
            + I
Sbjct: 537 HLHI 540

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 33/243 (13%), Positives = 71/243 (29%), Gaps = 45/243 (18%)

Query: 418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIW 477
           +LP ++  L++         A      + L ++ +      K+ P     L  L+ + + 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 478 ECENLVSFPQGGL-PCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED 536
               L          C  LT L +      ++         +L  L              
Sbjct: 82  HN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL-------------- 126

Query: 537 DGLPTNLH--RLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLAS 594
                +L    L         +  +L++L +S     + +   E++ +          +S
Sbjct: 127 -----DLSHNGLSSTKLGTQVQLENLQELLLSNN--KIQALKSEELDIF-------ANSS 172

Query: 595 LMI----GNFPNLERLS-SSIVDLQNLTHLELEDCPKLKYFPEKGLP-----SSLLQLYI 644
           L       N   ++  S      +  L  L L +  +L     + L      +S+  L +
Sbjct: 173 LKKLELSSN--QIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSL 229

Query: 645 GGC 647
              
Sbjct: 230 SNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 47/283 (16%), Positives = 82/283 (28%), Gaps = 73/283 (25%)

Query: 392 ISRCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETI 450
            +R   LT +    N +   LE      LP  LK L++      +   +     T+L  +
Sbjct: 45  FTRYSQLTSLDVGFNTIS-KLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTEL 102

Query: 451 SISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGL-PCAKLTRLEISYCK----- 504
            +      KI  +     + L  + +     L S   G       L  L +S  K     
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 505 ----------RLQVL-----------PKGLHNLTSLQQLTIGE---GGELPSLEEDDGLP 540
                      L+ L           P   H +  L  L +     G  L      +   
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 541 TNLHRLEIIDNK---------KIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPAC 591
           T++  L + +++            K+++L  L +S               L         
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN------------NLNV------- 262

Query: 592 LASLMIGNFPNLERL-----------SSSIVDLQNLTHLELED 623
           + +      P LE             S S+  L N+ +L L+ 
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 45/298 (15%), Positives = 98/298 (32%), Gaps = 61/298 (20%)

Query: 239 ITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSP-LSLSSLREIEIY 297
           + S   L   +    K+    +         I  R  +  +  P +   S   ++ +++ 
Sbjct: 42  LASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS 101

Query: 298 GCSSLVSFPEVALPS--KLKKIEIREC----DALKSLPEAWMCDTNSSLEILEIWICNSL 351
                VS     L    KL+ + +         + +L +      NS+L  L +  C+  
Sbjct: 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK------NSNLVRLNLSGCSGF 155

Query: 352 TYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATL 411
           +                 E  +Q+  SS     S L+ L++S C   T           +
Sbjct: 156 S-----------------EFALQTLLSS----CSRLDELNLSWCFDFT--------EKHV 186

Query: 412 ESLEVGNLPPSLKSLDVWSCSEL---ESIAERLDNNTSLETISISECENL--KILPSGLH 466
           +   V ++  ++  L++    +      ++  +    +L  + +S+   L          
Sbjct: 187 QVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FF 244

Query: 467 NLRQLQEIGIWECEN-----LVSFPQGGLPCAKLTRLEISYC---KRLQVLPKGLHNL 516
            L  LQ + +  C +     L+   +       L  L++        LQ+L + L +L
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGE----IPTLKTLQVFGIVPDGTLQLLKEALPHL 298

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 56/224 (25%)

Query: 421 PSLKSLDVWSCSELESIAERLDNNTSLETISISECENL--KILPSGLHNLRQLQEIGIWE 478
             L++L +      + I   L  N++L  +++S C       L + L +  +L E+ +  
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

Query: 479 CENLVSFPQGGL---PCAKLTRLEISYCKR------LQVLPKGLHNLTSLQQLTIGEGGE 529
           C +                +T+L +S  ++      L  L +   NL  L          
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL---------- 227

Query: 530 LPSLEEDDGLPTNLHRLEIIDN---KKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTL 586
                       +L    ++ N   ++ ++ + L+ L++S C D  +             
Sbjct: 228 ------------DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD--II------------ 261

Query: 587 PLPACLASLMIGNFPNLERLS-SSIVDLQNLTHLELEDCPKLKY 629
             P  L  L  G  P L+ L    IV    L  L  E  P L+ 
Sbjct: 262 --PETLLEL--GEIPTLKTLQVFGIVPDGTLQLL-KEALPHLQI 300

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 32/190 (16%)

Query: 406 ELPATLESLEVGNLPPSLKSLDVWSCSELESIAER--LDNNTSLETISISECENLKILPS 463
            + +    L        L+ LD    + L+ ++E     +  +L  + IS   + ++  +
Sbjct: 92  TMSSNFLGL------EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN 143

Query: 464 G-LHNLRQLQEIGIWECENLVSFPQGGL-PCAKLTRLEISYCKRLQVLPKG-LHNLTSLQ 520
           G  + L  L+ + +       +F          LT L++S C +L+ L     ++L+SLQ
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 202

Query: 521 QLTIGEGGELPSLEED--DGLPTNLHRLEIIDNKKIWK---------FSSLRQLTISG-- 567
            L +       SL+      L  +L  L+   N  I            SSL  L ++   
Sbjct: 203 VLNMS-HNNFFSLDTFPYKCLN-SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 568 --CDDDMVSF 575
             C  +  SF
Sbjct: 260 FACTCEHQSF 269

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 39/255 (15%), Positives = 73/255 (28%), Gaps = 47/255 (18%)

Query: 436 SIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGL-PCAK 494
           +I E   N    +   +++    + L S   +   ++E+ +     L       L P  K
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 495 LTRLEISYCKRLQVLPKGLHNLTSLQQLT-----IGEGGELPSLEE-----------DDG 538
           L  L +S    L      L +L++L+ L      + E    PS+E               
Sbjct: 60  LELLNLSSN-VLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS 117

Query: 539 LPTNLHRLEIIDNK-------KIWKFSSLRQLTISGCDDDMVSFPPEDIRLR-------- 583
                  + + +NK            S ++ L +   + D V+F                
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 584 ----TTLPLPACLASLMI----GNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-G 634
                 +      A L       N   L  +         +T + L +  KL    +   
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALR 234

Query: 635 LPSSLLQLYIGGCPL 649
              +L    + G   
Sbjct: 235 FSQNLEHFDLRGNGF 249

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 48/314 (15%), Positives = 93/314 (29%), Gaps = 62/314 (19%)

Query: 383 TSSLLEGLHISRCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAER- 440
           T  +  G       +   + F  + +   L +  + +    ++ L++    ++E I    
Sbjct: 32  TQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFR-QVELLNLNDL-QIEEIDTYA 88

Query: 441 LDNNTSLETISISECENLKILPSG-LHNLRQLQEIGIWECENLVSFPQG---GLPCAKLT 496
                +++ + +     ++ LP     N+  L  + +    +L S P+G     P  KLT
Sbjct: 89  FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTP--KLT 144

Query: 497 RLEISYCKRLQVLPKG-LHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK--K 553
            L +S    L+ +        TSLQ L +     L  +  D  L  +L    +  N    
Sbjct: 145 TLSMSNN-NLERIEDDTFQATTSLQNLQL-SSNRLTHV--DLSLIPSLFHANVSYNLLST 200

Query: 554 IWKFSSLRQLTISGCDDDMVSFPPED-IRLR---------TTLPLPACLASL-------- 595
           +    ++ +L  S     +        + L          T          L        
Sbjct: 201 LAIPIAVEELDASHNS--INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

Query: 596 --------MIGNFPNLERL----------SSSIVDLQNLTHLELEDCPKLKYFPEK--GL 635
                          LERL          +     +  L  L+L     L +        
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF 317

Query: 636 PSSLLQLYIGGCPL 649
              L  LY+    +
Sbjct: 318 D-RLENLYLDHNSI 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 55/410 (13%), Positives = 129/410 (31%), Gaps = 40/410 (9%)

Query: 267 LEYIDLRDCQDLVKLPQSPL--SLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDA 324
           L+++DL        LP      ++S L+ + +     L     + +        +     
Sbjct: 92  LKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGE 149

Query: 325 LKSLPEAWMCDTNSSLEILEIW--ICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRY 382
                E      + + E L I         +I  V +       L+  + +   +    +
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 383 TSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLD 442
            S L +     +  +LT + +      +   +       ++    + +      +  R  
Sbjct: 210 LSILAKLQTNPKLSNLT-LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 443 N--NTSLETISISECEN--LKILPSGL-HNLRQLQEIGIWECENLVSFPQGGL-PCAKLT 496
           +   TSL+ +SI +  +       S +      +                      +   
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT-VSGTRMVHMLCPSKISPFL 327

Query: 497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGL---PTNLHRLEIIDNKK 553
            L+ S       + +   +LT L+ L + +  +L  L +   +     +L +L+I  N  
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLIL-QMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 554 IW-----KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS 608
            +       S  + L       ++++             LP  +  L + +   ++ +  
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-------LPPRIKVLDLHS-NKIKSIPK 438

Query: 609 SIVDLQNLTHLELEDCPKLKYFPEKGLPS--SLLQLYIGG------CPLI 650
            +V L+ L  L +    +LK  P+       SL ++++        CP I
Sbjct: 439 QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 44/255 (17%), Positives = 89/255 (34%), Gaps = 50/255 (19%)

Query: 411 LESLEVG---NLPPSLKSLDVWSCSELESIAERL-DNNTSLETISISECENLKILPSGL- 465
           + ++E     +L  SL+ LD+     L +++       +SL  +++       +  + L 
Sbjct: 88  INTIEEDSFSSLG-SLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 466 HNLRQLQEIGIWECENLVSFPQGGL-PCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQLT 523
            +L +LQ + +   +      +        L  LEI     LQ      L ++ ++  L 
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLI 204

Query: 524 IGEGGELPSLEED--DGLPTNLHRLEIIDNK---------------KIWKFSSLRQLTIS 566
           +    +   L E   D   +++  LE+ D                  + K  + R + I+
Sbjct: 205 L-HMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 567 GCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPN--LERLSSSIVD-LQNLTHLELE- 622
                       D  L   + L   ++ L+   F    L+ +   I D L +L  + L  
Sbjct: 263 ------------DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 623 -----DCPKLKYFPE 632
                 CP++ Y   
Sbjct: 311 NPWDCSCPRIDYLSR 325

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 34/196 (17%)

Query: 387 LEGLHISRCPSLTCIFSKNELPATLESLEVGN----------LPPSLKSLDVWSCSELES 436
               ++ +  S+T   ++NEL  +++ +   N            P++  L + + ++L  
Sbjct: 23  TIKDNLKK-KSVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFL-NGNKLTD 79

Query: 437 IAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWEC-----ENLVSFPQGGLP 491
           I + L N  +L  + + E +   +  S L +L++L+ + +          LV  P     
Sbjct: 80  I-KPLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDINGLVHLP----- 131

Query: 492 CAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDN 551
             +L  L +   K +  +   L  LT L  L++ E  ++  +    GL T L  L +  N
Sbjct: 132 --QLESLYLGNNK-ITDIT-VLSRLTKLDTLSL-EDNQISDIVPLAGL-TKLQNLYLSKN 185

Query: 552 K--KIWKFSSLRQLTI 565
               +   + L+ L +
Sbjct: 186 HISDLRALAGLKNLDV 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 38/275 (13%), Positives = 78/275 (28%), Gaps = 23/275 (8%)

Query: 392 ISRCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETI 450
               P L  +  S+ E+  T+E     +L   L +L +                +SL+ +
Sbjct: 48  FFSFPELQVLDLSRCEI-QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 451 SISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ----GGLPCAKLTRLEISYCKRL 506
              E     +    + +L+ L+E+ +     + SF        L    L  L++S  K  
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLT--NLEHLDLSSNKIQ 162

Query: 507 QVLPKGLHNLTSLQQLTIG---EGGELPSLEEDDGLPTNLHRLEIIDNKKIWK-----FS 558
            +    L  L  +  L +        +  ++        LH+L + +N            
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 559 SLRQLTISGCDDDMVSFPP--EDIRLRTTLPLPACLASLMIGNFPNL--ERLSSSIVDLQ 614
            L  L +              E         L           + +   + +      L 
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 615 NLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL 649
           N++   L     ++   +         L +  C  
Sbjct: 283 NVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKF 316

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 67/434 (15%), Positives = 139/434 (32%), Gaps = 67/434 (15%)

Query: 267 LEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEI------- 319
           LEY+D+   + L  +   P++  SLR +++   +     P       L K+         
Sbjct: 102 LEYLDVSHNR-LQNISCCPMA--SLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAAK 157

Query: 320 ---RECDALKSLPEAWMCDTNSSLEI----LEIWICNSLTYIAGVQLPPSLKWTLTVEEG 372
               +   +  L  + +     S  I     E     + T +  V  P SL         
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ--VNM 215

Query: 373 IQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNL------------P 420
             ++    + ++  L   +  R  +     ++      +    +               P
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 421 PSLKSLDVWSCSELESIAERL--DNNTSLETISISECENLKI--LPSGLHN-LRQLQEIG 475
             ++ L++++ +  E I       + T+L+++ I   +N         L++   ++    
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 476 IWECENLVSFPQG-GLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLE 534
           +    +            +  T L  +       + +G   L  LQ L + +   L +  
Sbjct: 336 LS-ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL-QRNGLKNFF 393

Query: 535 EDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL---RTTLP---- 587
           +   +  N+  LE +D        SL  L  S   D   ++    + L      L     
Sbjct: 394 KVALMTKNMSSLETLDV-------SLNSLN-SHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 588 --LPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPS--SLLQLY 643
             LP  +  L + N   +  +   +  LQ L  L +    +LK  P+       SL  ++
Sbjct: 446 RCLPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIW 503

Query: 644 IGG------CPLIA 651
           +        CP I 
Sbjct: 504 LHDNPWDCTCPGIR 517

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 48/239 (20%)

Query: 418 NLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLKILPSGLHNLRQLQEIGI 476
           +LPP    LD+   +++  I +    N  +L T+ +   +  KI P     L +L+ + +
Sbjct: 49  DLPPDTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 477 WECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQL----------TIG 525
                L   P+       L  L +   + +  + K   + L  +  +           I 
Sbjct: 108 -SKNQLKELPEKMPK--TLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 526 EG--GELPSLEE-----------DDGLPTNLHRLEIIDNK--KI-----WKFSSLRQLTI 565
            G    +  L               GLP +L  L +  NK  K+        ++L +L +
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223

Query: 566 SGCDDDMVSFPPEDIRLRTTLPLPACLASLMI-GNFPNLERLSSSIVDLQNLTHLELED 623
           S             +   +    P  L  L +  N   L ++   + D + +  + L +
Sbjct: 224 SFN-------SISAVDNGSLANTPH-LRELHLNNN--KLVKVPGGLADHKYIQVVYLHN 272

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 16/174 (9%)

Query: 392 ISRCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETI 450
            +    +T +      +  T+E ++   L  +L  L++    ++  +   L N T +  +
Sbjct: 37  QADLDGITTLSAFGTGV-TTIEGVQ--YLN-NLIGLELKDN-QITDL-APLKNLTKITEL 90

Query: 451 SISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLP 510
            +S      +  S +  L+ ++ + +   +     P  GL    L  L +   + +  + 
Sbjct: 91  ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLS--NLQVLYLDLNQ-ITNIS 145

Query: 511 KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLT 564
             L  LT+LQ L+IG   ++  L     L + L  L+  DN KI   S L  L 
Sbjct: 146 -PLAGLTNLQYLSIG-NAQVSDLTPLANL-SKLTTLKADDN-KISDISPLASLP 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	681
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.64
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.53
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.46
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.45
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.38
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.37
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.35
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.35
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.35
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.34
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.32
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.31
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.26
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.01
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.99
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.99
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.98
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.95
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.94
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.84
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.81
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.46
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.92
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	91.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	88.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	83.58

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.4e-44  Score=409.09  Aligned_cols=383  Identities=20%  Similarity=0.133  Sum_probs=209.1

Q ss_pred             CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCCCceEEEEecCCCCCccccccccCCCC-ccc
Q 045938          265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCDTNS-SLE  341 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~  341 (681)
                      ++|++|++++|...+.+|..++.+++|++|++++|.....+|.  ...+++|++|++++|.....+|..+  ..++ +|+
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~~L~  371 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL--TNLSASLL  371 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH--HHHTTTCS
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH--HhhhcCCc
Confidence            4455555555544444444455555555555554432223331  2334555555555544222333332  2222 455


Q ss_pred             eeeeccCCCcccccccc-C--CCCceeEEEeccccccccccc-ccCCCCcceeeeccCCCcccccccCCcchhhhhcccC
Q 045938          342 ILEIWICNSLTYIAGVQ-L--PPSLKWTLTVEEGIQSSSSSR-RYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVG  417 (681)
Q Consensus       342 ~L~l~~c~~l~~~~~~~-~--~~~l~~~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  417 (681)
                      .|++++|.-...++... .  .++++ .+.+.++.....++. ...+++|++|+++++. ++.     ..+..     ++
T Consensus       372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-----~~p~~-----l~  439 (768)
T 3rgz_A          372 TLDLSSNNFSGPILPNLCQNPKNTLQ-ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSG-----TIPSS-----LG  439 (768)
T ss_dssp             EEECCSSEEEEECCTTTTCSTTCCCC-EEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EES-----CCCGG-----GG
T ss_pred             EEEccCCCcCCCcChhhhhcccCCcc-EEECCCCccccccCHHHhcCCCCCEEECcCCc-ccC-----cccHH-----Hh
Confidence            55554432211111110 0  23344 444444433322222 2233455555555532 111     01111     22


Q ss_pred             CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938          418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR  497 (681)
Q Consensus       418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  497 (681)
                      .++. |++|++++|...+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|...+.+|..+..+++|++
T Consensus       440 ~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          440 SLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             GCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            3333 555666555555555555555556666666655555555555555555666666555544455555555555666


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCc--------------------------------------------
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSL--------------------------------------------  533 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~--------------------------------------------  533 (681)
                      |++++|.....+|..++.+++|+.|++++|...+.+                                            
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence            666665555555555555555666655555443333                                            


Q ss_pred             --------------------------cccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCc-CCCccc
Q 045938          534 --------------------------EEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMV-SFPPED  579 (681)
Q Consensus       534 --------------------------~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~-~l~~~~  579 (681)
                                                |..++.+++|++|++++|+.       ++++++|+.|++++|  .+. .+|...
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N--~l~g~ip~~l  676 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN--DISGSIPDEV  676 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS--CCCSCCCGGG
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC--ccCCCCChHH
Confidence                                      33355567899999999986       557889999999997  454 667665


Q ss_pred             cccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhHHh----hhc
Q 045938          580 IRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAE----KCR  655 (681)
Q Consensus       580 ~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~----~~~  655 (681)
                             ..+++|++|+++++.--..+|..+..+++|++|++++|+....+|..+.+.++....+.|||.+..    .|.
T Consensus       677 -------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~  749 (768)
T 3rgz_A          677 -------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD  749 (768)
T ss_dssp             -------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred             -------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCC
Confidence                   577889999999974334888899999999999999997777788877777777777888875432    688


Q ss_pred             cCCCccccccccccee
Q 045938          656 KDGGQYWDLLTHIPKV  671 (681)
Q Consensus       656 ~~~~~~~~~l~~~~~~  671 (681)
                      ...+++|.+++|.+.+
T Consensus       750 ~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          750 PSNADGYAHHQRSHHH  765 (768)
T ss_dssp             SCC-------------
T ss_pred             CCccCCCCCCCCcccc
Confidence            8999999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-40  Score=379.39  Aligned_cols=130  Identities=18%  Similarity=0.148  Sum_probs=65.3

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |++|++++|...+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|...+.+|..+..+++|++|++++
T Consensus       420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~  499 (768)
T 3rgz_A          420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN  499 (768)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence            55555555544444444455555555555555555444454455555555555555544334444444455555555555


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      |.....+|.+++.+++|++|++++|...+.+|..++.+++|++|++++|.
T Consensus       500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            55444445555555555555555555444444445555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.8e-36  Score=340.17  Aligned_cols=571  Identities=16%  Similarity=0.090  Sum_probs=360.2

Q ss_pred             cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938            9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL   86 (681)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L   86 (681)
                      +.++.++.+...+|..+.    +++++|+++++ .++.+++  ++.+++|++|+++++. +..++...++.     +++|
T Consensus         7 ~~~~cs~~~L~~ip~~~~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-----l~~L   75 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP----TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQK-----LPML   75 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC----TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHH-----CTTC
T ss_pred             CeeECCCCCccccccccC----CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhc-----ccCc
Confidence            345555555666665432    46777777764 4555553  6667777777776664 55554443333     6677


Q ss_pred             ceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCC---CCCCCccEEEEccCCCce---eecCCCCcccE
Q 045938           87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEELL---VSVSSLPSLCK  160 (681)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~~~~---~~~~~l~~L~~  160 (681)
                      ++|+++++ .+...... .   +..+++|++|+++++ ++++..|   ..+++|++|++++|....   ..+..+++|++
T Consensus        76 ~~L~L~~n-~l~~l~~~-~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  149 (680)
T 1ziw_A           76 KVLNLQHN-ELSQLSDK-T---FAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE  149 (680)
T ss_dssp             CEEECCSS-CCCCCCTT-T---TTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE
T ss_pred             CEEECCCC-ccCccChh-h---hccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE
Confidence            77777654 22222111 1   345677777777664 2332221   235677777777664321   23445677777


Q ss_pred             EEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeec
Q 045938          161 FIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTIT  240 (681)
Q Consensus       161 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  240 (681)
                      |++++|.........-  .                    ....++|++|++.++....    .....+..+++|+.|++.
T Consensus       150 L~L~~n~l~~~~~~~~--~--------------------~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~  203 (680)
T 1ziw_A          150 LLLSNNKIQALKSEEL--D--------------------IFANSSLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLN  203 (680)
T ss_dssp             EECCSSCCCCBCHHHH--G--------------------GGTTCEESEEECTTCCCCC----BCTTGGGGSSEECEEECT
T ss_pred             EEccCCcccccCHHHh--h--------------------ccccccccEEECCCCcccc----cChhhhhhhhhhhhhhcc
Confidence            7777765433221100  0                    0013566666666653221    233445666677777776


Q ss_pred             CCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCC--cceEEEeCCCCceeec--CCCCCCCceE
Q 045938          241 SCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSS--LREIEIYGCSSLVSFP--EVALPSKLKK  316 (681)
Q Consensus       241 ~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~--L~~L~L~~~~~l~~~~--~~~~~~~L~~  316 (681)
                      ++. +..   .........+  ..++|++|++++|...+..|..+..++.  |++|++++|. +..++  ....+++|++
T Consensus       204 ~~~-l~~---~~~~~~~~~l--~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  276 (680)
T 1ziw_A          204 NVQ-LGP---SLTEKLCLEL--ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEY  276 (680)
T ss_dssp             TCC-CHH---HHHHHHHHHH--TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred             ccc-cCh---hhHHHHHHHh--hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccE
Confidence            653 211   0000000000  1256777777776665555555555543  7777777664 44443  2344667777


Q ss_pred             EEEecCCCCCccccccccCCCCccceeeeccCCCcc-----ccc-----cccCCCCceeEEEeccccccccccc-ccCCC
Q 045938          317 IEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLT-----YIA-----GVQLPPSLKWTLTVEEGIQSSSSSR-RYTSS  385 (681)
Q Consensus       317 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~  385 (681)
                      |++++|......+..+  ..+++|+.|+++++..-.     .++     .....++++ .+.+.++........ ...++
T Consensus       277 L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~  353 (680)
T 1ziw_A          277 FFLEYNNIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE-HLNMEDNDIPGIKSNMFTGLI  353 (680)
T ss_dssp             EECCSCCBSEECTTTT--TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC-EEECCSCCBCCCCTTTTTTCT
T ss_pred             eeCCCCccCccChhhh--cCCCCccEEeccchhhhcccccccccccChhhcccCCCCC-EEECCCCccCCCChhHhcccc
Confidence            7777665332233333  566677777766532111     111     012234455 555555543322222 22356


Q ss_pred             CcceeeeccCC-CcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-C
Q 045938          386 LLEGLHISRCP-SLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-S  463 (681)
Q Consensus       386 ~L~~L~l~~~~-~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~  463 (681)
                      +|++|+++++. .+.. .+...+.       .... ++|+.|++++|...+..+..+..+++|++|++++|.+.+.++ .
T Consensus       354 ~L~~L~Ls~n~~~~~~-l~~~~f~-------~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          354 NLKYLSLSNSFTSLRT-LTNETFV-------SLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             TCCEEECTTCBSCCCE-ECTTTTG-------GGTT-SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             CCcEEECCCCchhhhh-cchhhhc-------cccc-CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence            79999998864 1222 1111111       0011 249999999998877777889999999999999999987655 5


Q ss_pred             cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccccc--ccccccCcccCCcceeeecccCCCCCccccCCCCC
Q 045938          464 GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRL--QVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPT  541 (681)
Q Consensus       464 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  541 (681)
                      .+.++++|++|++++|......+..+..+++|++|++++|...  ...|..++.+++|+.|++++|...+..+..++.++
T Consensus       425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~  504 (680)
T 1ziw_A          425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE  504 (680)
T ss_dssp             GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence            6888999999999999854444556778899999999998754  46788899999999999999987766666688999


Q ss_pred             CCceeeeecCcc---------------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc
Q 045938          542 NLHRLEIIDNKK---------------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL  606 (681)
Q Consensus       542 ~L~~L~l~~~~~---------------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l  606 (681)
                      +|++|++++|..               +.++++|++|++++|  .+..+|.+.+      ...++|+.|+++++ +++.+
T Consensus       505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~------~~l~~L~~L~Ls~N-~l~~l  575 (680)
T 1ziw_A          505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVF------KDLFELKIIDLGLN-NLNTL  575 (680)
T ss_dssp             TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCSS-CCCCC
T ss_pred             ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHc------ccccCcceeECCCC-CCCcC
Confidence            999999999976               246789999999998  6778887543      56789999999885 88889


Q ss_pred             ccc-ccCCCCCCEEeecCCCCCcccCCCC---CcccccEEEeCCchhHH
Q 045938          607 SSS-IVDLQNLTHLELEDCPKLKYFPEKG---LPSSLLQLYIGGCPLIA  651 (681)
Q Consensus       607 ~~~-~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~  651 (681)
                      |.. +..+++|+.|++++| .++.++...   .+++|++|++++||..-
T Consensus       576 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          576 PASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred             CHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCccc
Confidence            875 578999999999998 788777642   46899999999988543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.1e-35  Score=330.57  Aligned_cols=551  Identities=16%  Similarity=0.122  Sum_probs=350.7

Q ss_pred             cccccceEEeccCCcCCCcc-cccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCc
Q 045938            5 HKNLEQFCISGYGGAKFPTW-FGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPI   81 (681)
Q Consensus         5 ~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~   81 (681)
                      ++++++|+++++....+|.. +.  .+++|++|+++++ .+..+++  ++.+++|++|+++++. +..++...++.    
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~----   95 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAF----   95 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTT----
T ss_pred             CCCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc-cCccChhhhcc----
Confidence            36899999999998887764 44  5899999999997 5666653  8899999999999986 88888765554    


Q ss_pred             cCCCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCC---CCCCccEEEEccCCCcee---e--cC
Q 045938           82 PFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLV---S--VS  153 (681)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~~~~~---~--~~  153 (681)
                       +++|++|++.++. +...... .   +..+++|++|++++|. +++..|.   .+++|++|+++++.....   .  ..
T Consensus        96 -l~~L~~L~L~~n~-l~~~~~~-~---~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  168 (680)
T 1ziw_A           96 -CTNLTELHLMSNS-IQKIKNN-P---FVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF  168 (680)
T ss_dssp             -CTTCSEEECCSSC-CCCCCSC-T---TTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred             -CCCCCEEECCCCc-cCccChh-H---ccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence             8999999999863 3333211 1   5679999999999963 4433333   578999999998753221   1  22


Q ss_pred             CCCcccEEEECCCCCceeeccccccCCCCcceeecCCCccccc---CCCC--CCCCCcceEeecccCCceeeeecccccc
Q 045938          154 SLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLA---GPLK--PRIPKLEELEINDMKEQTYIWKSHNELL  228 (681)
Q Consensus       154 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~  228 (681)
                      ..++|++|++++|........  .+.....+.....++.....   ..++  ...++|++|.+.++.....    ....+
T Consensus       169 ~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~----~~~~~  242 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIKEFSPG--CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT----SNTTF  242 (680)
T ss_dssp             TTCEESEEECTTCCCCCBCTT--GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE----CTTTT
T ss_pred             ccccccEEECCCCcccccChh--hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc----ChhHh
Confidence            468999999999865433211  00001111111110000000   0000  0113445555544432221    11222


Q ss_pred             ccccc--ccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCce---
Q 045938          229 QDICS--LKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLV---  303 (681)
Q Consensus       229 ~~~~~--L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~---  303 (681)
                      ..++.  |+.|++++| .++.+++..    +    ..+++|++|++++|...+..|..+..+++|++|++++|..-.   
T Consensus       243 ~~l~~~~L~~L~Ls~n-~l~~~~~~~----~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  313 (680)
T 1ziw_A          243 LGLKWTNLTMLDLSYN-NLNVVGNDS----F----AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS  313 (680)
T ss_dssp             GGGGGSCCCEEECTTS-CCCEECTTT----T----TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred             hccCcCCCCEEECCCC-CcCccCccc----c----cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence            33322  555555554 333332221    1    122555555555555544444455555555555555432111   


Q ss_pred             --eec-----CCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCC-ccccccccCCCCceeEEEecccccc
Q 045938          304 --SFP-----EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNS-LTYIAGVQLPPSLKWTLTVEEGIQS  375 (681)
Q Consensus       304 --~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~~l~~~~~~~~  375 (681)
                        .+|     ....+++|++|++++|. +..++...+ ..+++|+.|++++|.. +..++...                 
T Consensus       314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~-----------------  374 (680)
T 1ziw_A          314 LASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNET-----------------  374 (680)
T ss_dssp             ---CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTT-----------------
T ss_pred             cccccccChhhcccCCCCCEEECCCCc-cCCCChhHh-ccccCCcEEECCCCchhhhhcchhh-----------------
Confidence              111     12234555555555554 222222221 4455555555554321 11111100                 


Q ss_pred             cccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHH-HhcccCCCccEEEeec
Q 045938          376 SSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIA-ERLDNNTSLETISISE  454 (681)
Q Consensus       376 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ls~  454 (681)
                         ......+.|++|+++++. ++.+.+     .     .+..++. |++|++++|...+.++ ..+..+++|++|++++
T Consensus       375 ---f~~~~~~~L~~L~L~~n~-l~~~~~-----~-----~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~  439 (680)
T 1ziw_A          375 ---FVSLAHSPLHILNLTKNK-ISKIES-----D-----AFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY  439 (680)
T ss_dssp             ---TGGGTTSCCCEEECTTSC-CCEECT-----T-----TTTTCTT-CCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred             ---hcccccCcCceEECCCCC-CCeECh-----h-----hhhCCCC-CCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence               001112468999998853 333111     1     1445555 9999999998776554 6788999999999999


Q ss_pred             ccCcccccCcCcCcccccEEeeccCCCc--eecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCC
Q 045938          455 CENLKILPSGLHNLRQLQEIGIWECENL--VSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS  532 (681)
Q Consensus       455 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~  532 (681)
                      |.+....+..+..+++|+.|++++|...  +.+|..+..+++|+.|++++|......+..+..+++|++|++++|.....
T Consensus       440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred             CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence            9988888888999999999999988743  45677888899999999999986655556788999999999999986542


Q ss_pred             c----c----ccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEe
Q 045938          533 L----E----EDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMI  597 (681)
Q Consensus       533 ~----~----~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l  597 (681)
                      .    |    ..++.+++|++|++++|..       +.++++|+.|++++|  .+..+|...+      ..+++|+.|++
T Consensus       520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~------~~l~~L~~L~L  591 (680)
T 1ziw_A          520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN--NLNTLPASVF------NNQVSLKSLNL  591 (680)
T ss_dssp             GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEEC
T ss_pred             chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC--CCCcCCHhHh------CCCCCCCEEEC
Confidence            1    1    2368889999999999976       457899999999998  7778887653      46689999999


Q ss_pred             cccCCccccccc-cc-CCCCCCEEeecCCCCCc
Q 045938          598 GNFPNLERLSSS-IV-DLQNLTHLELEDCPKLK  628 (681)
Q Consensus       598 ~~~~~l~~l~~~-~~-~~~~L~~L~l~~c~~l~  628 (681)
                      +++ .++.++.. +. .+++|+.|++++||..-
T Consensus       592 ~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          592 QKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             TTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred             CCC-cCCccChhHhcccccccCEEEccCCCccc
Confidence            996 78888764 44 68999999999986443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.6e-35  Score=326.97  Aligned_cols=512  Identities=15%  Similarity=0.148  Sum_probs=293.6

Q ss_pred             cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938            9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL   86 (681)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L   86 (681)
                      +.++.++.+...+|..+.    .++++|+++++ .++.++  .++.+++|++|+++++. +..+.+..++.     +++|
T Consensus        15 ~~~~c~~~~l~~iP~~l~----~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~-----l~~L   83 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTLP----NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQS-----QHRL   83 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC----TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTT-----CTTC
T ss_pred             ceEECCCCCcccCcCCCC----CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeChhhccC-----cccc
Confidence            456666667777887654    36889999885 567765  38889999999998886 77776655554     8888


Q ss_pred             ceeeccccCCcccccccCCCccccccCCcceEeeccCccccc---cCCCCCCCccEEEEccCCCce---eecCCCCcccE
Q 045938           87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKG---TFPEHLPALEMLVIEGCEELL---VSVSSLPSLCK  160 (681)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---~~~~~l~~L~~L~i~~~~~~~---~~~~~l~~L~~  160 (681)
                      ++|+++++. +..... ..   +..+++|++|+++++. +++   .....+++|++|++++|....   ..+..+++|++
T Consensus        84 ~~L~Ls~n~-l~~~~~-~~---~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  157 (606)
T 3t6q_A           84 DTLVLTANP-LIFMAE-TA---LSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV  157 (606)
T ss_dssp             CEEECTTCC-CSEECT-TT---TSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred             CeeeCCCCc-ccccCh-hh---hcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence            888888753 222211 11   4668888888888753 331   122346677777777765322   12333667777


Q ss_pred             EEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcc--eEeecccCCceeeeecccccccccccccEEe
Q 045938          161 FIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE--ELEINDMKEQTYIWKSHNELLQDICSLKRLT  238 (681)
Q Consensus       161 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  238 (681)
                      |+++++.........                        ...+++|+  +|.+.++.....    +... ....+|+.|+
T Consensus       158 L~L~~n~l~~~~~~~------------------------~~~l~~L~~l~L~l~~n~l~~~----~~~~-~~~~~L~~L~  208 (606)
T 3t6q_A          158 LDFQNNAIHYLSKED------------------------MSSLQQATNLSLNLNGNDIAGI----EPGA-FDSAVFQSLN  208 (606)
T ss_dssp             EECCSSCCCEECHHH------------------------HHTTTTCCSEEEECTTCCCCEE----CTTT-TTTCEEEEEE
T ss_pred             EEcccCcccccChhh------------------------hhhhcccceeEEecCCCccCcc----ChhH-hhhccccccc
Confidence            777776544322110                        00245555  455555433222    1112 2335667777


Q ss_pred             ecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc--CC-CCCCCCC--CcceEEEeCCCCceeecC--CCCC
Q 045938          239 ITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK--LP-QSPLSLS--SLREIEIYGCSSLVSFPE--VALP  311 (681)
Q Consensus       239 l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--l~-~~~~~l~--~L~~L~L~~~~~l~~~~~--~~~~  311 (681)
                      +++|..+...        ...+.  ...++.+.+........  ++ ..+..+.  +|+.|++++|. +..++.  ...+
T Consensus       209 l~~~~~~~~~--------~~~l~--~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~~~l  277 (606)
T 3t6q_A          209 FGGTQNLLVI--------FKGLK--NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCF  277 (606)
T ss_dssp             CTTCSCHHHH--------HHHTT--TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTTTTC
T ss_pred             cCCchhHHHH--------hhhcc--ccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHhccc
Confidence            7666533221        11110  01223333332222111  10 1111111  45566665543 444332  2335


Q ss_pred             CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceee
Q 045938          312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLH  391 (681)
Q Consensus       312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~  391 (681)
                      ++|++|++++|. +..+|..+  ..+++|+.|++++| .++.++..                                  
T Consensus       278 ~~L~~L~l~~n~-l~~lp~~l--~~l~~L~~L~l~~n-~l~~~~~~----------------------------------  319 (606)
T 3t6q_A          278 SGLQELDLTATH-LSELPSGL--VGLSTLKKLVLSAN-KFENLCQI----------------------------------  319 (606)
T ss_dssp             TTCSEEECTTSC-CSCCCSSC--CSCTTCCEEECTTC-CCSBGGGG----------------------------------
T ss_pred             cCCCEEeccCCc-cCCCChhh--cccccCCEEECccC-CcCcCchh----------------------------------
Confidence            556666665554 44555443  44555555555553 22221110                                  


Q ss_pred             eccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHH-HhcccCCCccEEEeecccCcccc--cCcCcCc
Q 045938          392 ISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIA-ERLDNNTSLETISISECENLKIL--PSGLHNL  468 (681)
Q Consensus       392 l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ls~~~~~~~~--~~~l~~l  468 (681)
                                             .+..++. |++|++++|.....++ ..+..+++|++|++++|.+.+..  +..++++
T Consensus       320 -----------------------~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  375 (606)
T 3t6q_A          320 -----------------------SASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL  375 (606)
T ss_dssp             -----------------------CGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred             -----------------------hhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence                                   0233333 6666666665543433 23566667777777766665544  5556666


Q ss_pred             ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938          469 RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE  547 (681)
Q Consensus       469 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  547 (681)
                      ++|++|++++|......+..+..+++|++|++++|......+. .+..+++|++|++++|......+..++.+++|++|+
T Consensus       376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  455 (606)
T 3t6q_A          376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN  455 (606)
T ss_dssp             TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence            7777777776664444455556666777777777665444333 356667777777777766555555566677777777


Q ss_pred             eecCcc----------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcc-cccccccCCCCC
Q 045938          548 IIDNKK----------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLE-RLSSSIVDLQNL  616 (681)
Q Consensus       548 l~~~~~----------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-~l~~~~~~~~~L  616 (681)
                      +++|..          +..+++|++|++++|  .+..++...+      ..+++|+.|+++++ .+. ..|..+..+++|
T Consensus       456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFC--DLSSIDQHAF------TSLKMMNHVDLSHN-RLTSSSIEALSHLKGI  526 (606)
T ss_dssp             CTTCBCGGGEECSSCGGGGCTTCCEEECTTS--CCCEECTTTT------TTCTTCCEEECCSS-CCCGGGGGGGTTCCSC
T ss_pred             CCCCCCCccccccchhhccCCCccEEECCCC--ccCccChhhh------ccccCCCEEECCCC-ccCcCChhHhCccccc
Confidence            777654          335777888888876  4555443222      46678888888886 444 445678889999


Q ss_pred             CEEeecCCCCCcccCCC--CCcccccEEEeCCchhH
Q 045938          617 THLELEDCPKLKYFPEK--GLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       617 ~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l  650 (681)
                       .|++++| .+..++..  ..+++|++|++++||..
T Consensus       527 -~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          527 -YLNLASN-HISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             -EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             -EEECcCC-cccccCHhhcccCCCCCEEeCCCCCcc
Confidence             9999998 55565543  34788999999998754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.4e-34  Score=317.02  Aligned_cols=460  Identities=15%  Similarity=0.099  Sum_probs=272.5

Q ss_pred             cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938            9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL   86 (681)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L   86 (681)
                      +.++.++.+...+|..+.    +++++|+++++ .++.+++  ++.+++|++|+++++. +..+++..++.     +++|
T Consensus        14 ~~~~c~~~~l~~ip~~~~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~-----l~~L   82 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIP----SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHG-----LHHL   82 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC----TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-----CTTC
T ss_pred             CceEccCCCcccCCCCCC----CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhc-----hhhc
Confidence            467777777888888643    68999999985 5677764  8899999999999986 88887665554     8999


Q ss_pred             ceeeccccCCcccccccCCCccccccCCcceEeeccCccccccC---CCCCCCccEEEEccCCCc----eeecCCCCccc
Q 045938           87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTF---PEHLPALEMLVIEGCEEL----LVSVSSLPSLC  159 (681)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~l~~L~~L~i~~~~~~----~~~~~~l~~L~  159 (681)
                      ++|+++++. +..... ..   +..+++|++|++++|. +++..   ...+++|++|++++|...    ...+..+++|+
T Consensus        83 ~~L~Ls~n~-l~~~~p-~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  156 (606)
T 3vq2_A           83 SNLILTGNP-IQSFSP-GS---FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV  156 (606)
T ss_dssp             CEEECTTCC-CCCCCT-TS---STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred             CEeECCCCc-ccccCh-hh---cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence            999998753 333322 11   5779999999999864 33122   245789999999988643    34577789999


Q ss_pred             EEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCC----cceEeecccCCceeeeeccccccccccccc
Q 045938          160 KFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPK----LEELEINDMKEQTYIWKSHNELLQDICSLK  235 (681)
Q Consensus       160 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  235 (681)
                      +|++++|........ .                       ...+.+    +.+|.+.++....    .+...+.. .+|+
T Consensus       157 ~L~Ls~n~l~~~~~~-~-----------------------~~~l~~L~~~l~~L~l~~n~l~~----~~~~~~~~-~~L~  207 (606)
T 3vq2_A          157 HVDLSYNYIQTITVN-D-----------------------LQFLRENPQVNLSLDMSLNPIDF----IQDQAFQG-IKLH  207 (606)
T ss_dssp             EEECCSSCCCEECTT-T-----------------------THHHHHCTTCCCEEECTTCCCCE----ECTTTTTT-CEEE
T ss_pred             EEEccCCcceecChh-h-----------------------hhhhhccccccceeeccCCCcce----eCcccccC-ceee
Confidence            999998875443211 0                       000111    2356666554322    22333333 3788


Q ss_pred             EEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcC--ccc-------CCCCCCCCCCcceEEEeCCCCce-ee
Q 045938          236 RLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQD--LVK-------LPQSPLSLSSLREIEIYGCSSLV-SF  305 (681)
Q Consensus       236 ~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~-------l~~~~~~l~~L~~L~L~~~~~l~-~~  305 (681)
                      .|+++++........    ..+    ..+++|+.+++.....  ...       .+..+..+ .++.+++..+..+. .+
T Consensus       208 ~L~L~~n~~~~~~~~----~~~----~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~  278 (606)
T 3vq2_A          208 ELTLRGNFNSSNIMK----TCL----QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDI  278 (606)
T ss_dssp             EEEEESCCSCHHHHH----HHH----HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGG
T ss_pred             eeeccCCccchhHHH----HHh----ccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccccccc
Confidence            888887632211111    112    2336666666543211  111       11112122 35555553333333 23


Q ss_pred             cCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCC
Q 045938          306 PEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSS  385 (681)
Q Consensus       306 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  385 (681)
                      +....+++|++|+++++. +..++ .+  ..+++|+.|++++|.- +.++..                         ..+
T Consensus       279 ~~~~~l~~L~~L~l~~~~-~~~l~-~l--~~~~~L~~L~l~~n~l-~~lp~~-------------------------~l~  328 (606)
T 3vq2_A          279 VKFHCLANVSAMSLAGVS-IKYLE-DV--PKHFKWQSLSIIRCQL-KQFPTL-------------------------DLP  328 (606)
T ss_dssp             GSCGGGTTCSEEEEESCC-CCCCC-CC--CTTCCCSEEEEESCCC-SSCCCC-------------------------CCS
T ss_pred             cccccCCCCCEEEecCcc-chhhh-hc--cccccCCEEEcccccC-cccccC-------------------------CCC
Confidence            444556777777777766 45555 22  5667777777777533 444311                         122


Q ss_pred             CcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchh--HHHhcccCCCccEEEeecccCcccccC
Q 045938          386 LLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELES--IAERLDNNTSLETISISECENLKILPS  463 (681)
Q Consensus       386 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~ls~~~~~~~~~~  463 (681)
                      +|++|+++++..+.. .+            +..++. |++|++++|.....  ++..+..+++|++|++++|.+.. +|.
T Consensus       329 ~L~~L~l~~n~~~~~-~~------------~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~  393 (606)
T 3vq2_A          329 FLKSLTLTMNKGSIS-FK------------KVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA  393 (606)
T ss_dssp             SCCEEEEESCSSCEE-CC------------CCCCTT-CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred             ccceeeccCCcCccc-hh------------hccCCC-CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence            466666666543333 11            344444 77777777654433  24556677777777777776544 445


Q ss_pred             cCcCcccccEEeeccCCCceecC-CCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCC-ccccCCCCC
Q 045938          464 GLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS-LEEDDGLPT  541 (681)
Q Consensus       464 ~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~  541 (681)
                      .+.++++|+.|++++|......+ ..+..+++|++|++++|......|..++.+++|++|++++|...+. +|..++.++
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence            66667777777777666333333 3455667777777777776655666666777777777777765542 455566666


Q ss_pred             CCceeeeecCcc-------cccCCcccEEEEecc
Q 045938          542 NLHRLEIIDNKK-------IWKFSSLRQLTISGC  568 (681)
Q Consensus       542 ~L~~L~l~~~~~-------~~~l~~L~~L~l~~~  568 (681)
                      +|++|++++|..       +.++++|++|++++|
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence            666666666654       234555555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.1e-34  Score=317.54  Aligned_cols=507  Identities=14%  Similarity=0.084  Sum_probs=308.1

Q ss_pred             cccccceEEeccCCcCC-CcccccccccceeEEEEeecCCCCCC-C-CCCCCCCcceeeecCCccceeeCccccCCCCCc
Q 045938            5 HKNLEQFCISGYGGAKF-PTWFGDSSFLKLVTLKFEYCGMCPTL-P-SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPI   81 (681)
Q Consensus         5 ~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~c~~l~~l-~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~   81 (681)
                      ++++++|+++++....+ |..+.  .+++|++|++++| .+..+ | .|+.+++|++|+++++. +..+++..++.    
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~----  103 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSG----  103 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTST--TCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSS----
T ss_pred             CCcCcEEEccCCccCcCChhHhc--cCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcc----
Confidence            46899999999998776 44555  5999999999997 45555 4 39999999999999997 77776655554    


Q ss_pred             cCCCcceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCC--CCCCccEEEEccCCCce---eecCCCC
Q 045938           82 PFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPE--HLPALEMLVIEGCEELL---VSVSSLP  156 (681)
Q Consensus        82 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~l~~L~~L~i~~~~~~~---~~~~~l~  156 (681)
                       +++|++|++.++. +.......    +..+++|++|+++++.-.....|.  .+++|++|+++++....   ..++.++
T Consensus       104 -l~~L~~L~L~~n~-i~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  177 (606)
T 3t6q_A          104 -PKALKHLFFIQTG-ISSIDFIP----LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ  177 (606)
T ss_dssp             -CTTCCEEECTTSC-CSCGGGSC----CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred             -cccccEeeccccC-cccCCcch----hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence             8999999999863 33322221    567999999999996432212232  37899999999986432   2466788


Q ss_pred             ccc--EEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccc--
Q 045938          157 SLC--KFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDIC--  232 (681)
Q Consensus       157 ~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--  232 (681)
                      +|+  +|++++|.........                         -...+|++|.+.++.....       .+..+.  
T Consensus       178 ~L~~l~L~l~~n~l~~~~~~~-------------------------~~~~~L~~L~l~~~~~~~~-------~~~~l~~~  225 (606)
T 3t6q_A          178 QATNLSLNLNGNDIAGIEPGA-------------------------FDSAVFQSLNFGGTQNLLV-------IFKGLKNS  225 (606)
T ss_dssp             TCCSEEEECTTCCCCEECTTT-------------------------TTTCEEEEEECTTCSCHHH-------HHHHTTTC
T ss_pred             ccceeEEecCCCccCccChhH-------------------------hhhccccccccCCchhHHH-------Hhhhcccc
Confidence            888  8889988765543220                         1235688888887763322       223333  


Q ss_pred             cccEEeecCCCCccc--cchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CC
Q 045938          233 SLKRLTITSCPKLQS--LVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VA  309 (681)
Q Consensus       233 ~L~~L~l~~c~~l~~--l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~  309 (681)
                      .++.+.+..+.....  +...    .+..+  ...+|++|++++|......+..++.+++|++|++++|. ++.+|. ..
T Consensus       226 ~l~~l~~~~~~~~~~~~i~~~----~~~~l--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~  298 (606)
T 3t6q_A          226 TIQSLWLGTFEDMDDEDISPA----VFEGL--CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV  298 (606)
T ss_dssp             EEEEEECCCCTTSCCCCCCGG----GGGGG--GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCC
T ss_pred             chhheechhhccccccccChh----Hhchh--hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhc
Confidence            334444444333222  2111    11111  11378999999988755455568889999999999875 667653 45


Q ss_pred             CCCCceEEEEecCCCCCcc-ccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938          310 LPSKLKKIEIRECDALKSL-PEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE  388 (681)
Q Consensus       310 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~  388 (681)
                      .+++|++|++++|. +..+ +..+  ..+++|+.|++++|.....++...+                      ...++|+
T Consensus       299 ~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~----------------------~~l~~L~  353 (606)
T 3t6q_A          299 GLSTLKKLVLSANK-FENLCQISA--SNFPSLTHLSIKGNTKRLELGTGCL----------------------ENLENLR  353 (606)
T ss_dssp             SCTTCCEEECTTCC-CSBGGGGCG--GGCTTCSEEECCSCSSCCBCCSSTT----------------------TTCTTCC
T ss_pred             ccccCCEEECccCC-cCcCchhhh--hccCcCCEEECCCCCcccccchhhh----------------------hccCcCC
Confidence            68899999999987 4444 4343  6788999999988643323322110                      0122466


Q ss_pred             eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccC-cCcC
Q 045938          389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPS-GLHN  467 (681)
Q Consensus       389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~-~l~~  467 (681)
                      +|+++++. ++.+..   .+.     .+..++. |++|++++|...+..+..+..+++|++|++++|.+.+..+. .+.+
T Consensus       354 ~L~l~~n~-l~~~~~---~~~-----~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (606)
T 3t6q_A          354 ELDLSHDD-IETSDC---CNL-----QLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN  423 (606)
T ss_dssp             EEECCSSC-CCEEEE---STT-----TTTTCTT-CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred             EEECCCCc-cccccC---cch-----hcccCCC-CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence            66655532 221000   000     0333444 66666666655554455566666666666666665544333 2555


Q ss_pred             cccccEEeeccCCCceecCCCCCCCCCcceEeecccccccc-c--cccCcccCCcceeeecccCCCCCccccCCCCCCCc
Q 045938          468 LRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQV-L--PKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLH  544 (681)
Q Consensus       468 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~-~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  544 (681)
                      +++|++|++++|......+..+..+++|++|++++|..... +  +..+..+++|++|++++|...+..|..++.+++|+
T Consensus       424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence            66666666666654433444455566666666666654331 1  13455566666666666655544445455555555


Q ss_pred             eeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecC
Q 045938          545 RLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELED  623 (681)
Q Consensus       545 ~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~  623 (681)
                      +|++++|+.                   ..++.+.+      ...++| .|+++++ .+..++. .+..+++|+.|++++
T Consensus       504 ~L~Ls~N~l-------------------~~~~~~~l------~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  556 (606)
T 3t6q_A          504 HVDLSHNRL-------------------TSSSIEAL------SHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQ  556 (606)
T ss_dssp             EEECCSSCC-------------------CGGGGGGG------TTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTT
T ss_pred             EEECCCCcc-------------------CcCChhHh------Cccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCC
Confidence            555555543                   22222111      233444 5555554 4444443 467788889999998


Q ss_pred             CCC
Q 045938          624 CPK  626 (681)
Q Consensus       624 c~~  626 (681)
                      |+.
T Consensus       557 N~~  559 (606)
T 3t6q_A          557 NPL  559 (606)
T ss_dssp             CCE
T ss_pred             CCc
Confidence            863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-32  Score=307.63  Aligned_cols=521  Identities=16%  Similarity=0.095  Sum_probs=351.8

Q ss_pred             eeEEEEeecCCCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccc
Q 045938           33 LVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVER  111 (681)
Q Consensus        33 L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  111 (681)
                      -++++.++ ..++.+|. +.  ++|++|+++++. ++.++...++.     +++|++|+++++ .+...... .   +..
T Consensus        13 ~~~~~c~~-~~l~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~Ls~n-~l~~i~~~-~---~~~   78 (606)
T 3vq2_A           13 NITYQCMD-QKLSKVPDDIP--SSTKNIDLSFNP-LKILKSYSFSN-----FSELQWLDLSRC-EIETIEDK-A---WHG   78 (606)
T ss_dssp             TTEEECTT-SCCSSCCTTSC--TTCCEEECTTSC-CCEECTTTTTT-----CTTCCEEECTTC-CCCEECTT-T---TTT
T ss_pred             CCceEccC-CCcccCCCCCC--CCcCEEECCCCC-cCEeChhhccC-----CccCcEEeCCCC-cccccCHH-H---hhc
Confidence            34566655 36788885 43  789999999987 88888765554     889999999875 23333221 1   466


Q ss_pred             cCCcceEeeccCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCC
Q 045938          112 FPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSN  191 (681)
Q Consensus       112 ~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (681)
                      +++|++|+++++. +++..|.                  .+..+++|++|++++|........                 
T Consensus        79 l~~L~~L~Ls~n~-l~~~~p~------------------~~~~l~~L~~L~L~~n~l~~~~~~-----------------  122 (606)
T 3vq2_A           79 LHHLSNLILTGNP-IQSFSPG------------------SFSGLTSLENLVAVETKLASLESF-----------------  122 (606)
T ss_dssp             CTTCCEEECTTCC-CCCCCTT------------------SSTTCTTCCEEECTTSCCCCSSSS-----------------
T ss_pred             hhhcCEeECCCCc-ccccChh------------------hcCCcccCCEEEccCCcccccccc-----------------
Confidence            8888888888753 4423343                  233344444444444443221100                 


Q ss_pred             cccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEe
Q 045938          192 QVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYID  271 (681)
Q Consensus       192 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~  271 (681)
                             ....+++|++|.+.++.....   .....+..+++|++|+++++ .++.++...    +..+......+++|+
T Consensus       123 -------~~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~----~~~l~~L~~~l~~L~  187 (606)
T 3vq2_A          123 -------PIGQLITLKKLNVAHNFIHSC---KLPAYFSNLTNLVHVDLSYN-YIQTITVND----LQFLRENPQVNLSLD  187 (606)
T ss_dssp             -------CCTTCTTCCEEECCSSCCCCC---CCCGGGGTCTTCCEEECCSS-CCCEECTTT----THHHHHCTTCCCEEE
T ss_pred             -------ccCCCCCCCEEeCCCCcccce---echHhHhhcCCCCEEEccCC-cceecChhh----hhhhhccccccceee
Confidence                   001234555555554432211   11345688999999999997 666665543    222222223366899


Q ss_pred             eeCCcCcccCCCCCCCCCCcceEEEeCCCCcee-ec-CCCCCCCceEEEEecCCC-----CCccccccccCCC--Cccce
Q 045938          272 LRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVS-FP-EVALPSKLKKIEIRECDA-----LKSLPEAWMCDTN--SSLEI  342 (681)
Q Consensus       272 l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~-~~-~~~~~~~L~~L~l~~~~~-----l~~~~~~~~~~~~--~~L~~  342 (681)
                      +++|.. ..++.......+|++|++++|..... .+ ....+++|+.+++.....     +..++...+ ..+  ..++.
T Consensus       188 l~~n~l-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~-~~l~~l~l~~  265 (606)
T 3vq2_A          188 MSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM-EGLCDVTIDE  265 (606)
T ss_dssp             CTTCCC-CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG-TTGGGSEEEE
T ss_pred             ccCCCc-ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh-hhhhhccHhh
Confidence            999987 55555554555999999998863222 11 233467777777653221     111111111 111  13455


Q ss_pred             eeeccCCCccc-cccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938          343 LEIWICNSLTY-IAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP  421 (681)
Q Consensus       343 L~l~~c~~l~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~  421 (681)
                      +.+..++.+.. ++.....++++ .+.+.++.. ..+......++|++|++++|.- .. ++     .      + .++.
T Consensus       266 l~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~-lp-----~------~-~l~~  329 (606)
T 3vq2_A          266 FRLTYTNDFSDDIVKFHCLANVS-AMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQ-FP-----T------L-DLPF  329 (606)
T ss_dssp             EEECCCTTCCGGGGSCGGGTTCS-EEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SS-CC-----C------C-CCSS
T ss_pred             eeccccccccccccccccCCCCC-EEEecCccc-hhhhhccccccCCEEEcccccC-cc-cc-----c------C-CCCc
Confidence            55544444433 22223345566 666665543 3333444456799999999753 33 22     1      3 4555


Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEe
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLE  499 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~  499 (681)
                       |++|++++|......  .+..+++|++|++++|.+.+.  .+..+..+++|++|++++|. +..++..+..+++|++|+
T Consensus       330 -L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          330 -LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLD  405 (606)
T ss_dssp             -CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEE
T ss_pred             -cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeE
Confidence             999999999766654  678999999999999988765  36678889999999999988 667888888999999999


Q ss_pred             ecccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEeccCC
Q 045938          500 ISYCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGCDD  570 (681)
Q Consensus       500 l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~~~  570 (681)
                      +++|......+ ..+..+++|++|++++|...+..+..++.+++|++|++++|..        +..+++|++|++++|  
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n--  483 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC--  483 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC--
Confidence            99999776666 5788999999999999998888888899999999999999975        447899999999998  


Q ss_pred             CCcCCCccccccccCCCcccccceeEecccCCcccc-cccccCCCCCCEEeecCCCCCcccCCC-CCc-ccccEEEeCCc
Q 045938          571 DMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL-SSSIVDLQNLTHLELEDCPKLKYFPEK-GLP-SSLLQLYIGGC  647 (681)
Q Consensus       571 ~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~-~~L~~L~i~~c  647 (681)
                      .+..++...+      ..+++|++|+++++ .+..+ |..+..+++|++|++++| .++.+|.. ..+ ++|++|++++|
T Consensus       484 ~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          484 QLEQISWGVF------DTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CCCEECTTTT------TTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred             cCCccChhhh------cccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence            5655554332      56789999999997 56655 778999999999999998 68888875 223 47999999998


Q ss_pred             hhH
Q 045938          648 PLI  650 (681)
Q Consensus       648 ~~l  650 (681)
                      |..
T Consensus       556 ~~~  558 (606)
T 3vq2_A          556 SVA  558 (606)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=301.97  Aligned_cols=510  Identities=16%  Similarity=0.107  Sum_probs=302.8

Q ss_pred             ceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcc
Q 045938           10 QFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLE   87 (681)
Q Consensus        10 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~   87 (681)
                      ..+.++.+....|. +    .++|++|+++++ .++.++  .++.+++|++|+++++.....++...++.     +++|+
T Consensus         8 ~~dcs~~~L~~vP~-l----p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-----L~~L~   76 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-V----LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-----LPNLR   76 (844)
T ss_dssp             EEEESCCCSSCCCS-S----CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-----CTTCC
T ss_pred             EEEccCCCCCCCCC-C----CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-----CCCCC
Confidence            45666677777887 2    468999999986 566664  38899999999999887677776665554     88999


Q ss_pred             eeeccccCCcccccccCCCccccccCCcceEeeccCccccccCC-----CCCCCccEEEEccCCCce----eecCCCCcc
Q 045938           88 TLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP-----EHLPALEMLVIEGCEELL----VSVSSLPSL  158 (681)
Q Consensus        88 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-----~~l~~L~~L~i~~~~~~~----~~~~~l~~L  158 (681)
                      +|+++++. +..... ..   +..+++|++|++++| ++++..|     ..+++|++|++++|....    ..++.+++|
T Consensus        77 ~L~Ls~N~-l~~~~p-~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           77 ILDLGSSK-IYFLHP-DA---FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             EEECTTCC-CCEECT-TS---SCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             EEECCCCc-CcccCH-hH---ccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            99998753 333222 22   567899999999986 3433333     346777777777765322    245667777


Q ss_pred             cEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCC--CCcceEeecccCCceeeeecccccccccc----
Q 045938          159 CKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRI--PKLEELEINDMKEQTYIWKSHNELLQDIC----  232 (681)
Q Consensus       159 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----  232 (681)
                      ++|+++++........ .                  +     ..+  ++|+.|.+.++.....   .+.. +..++    
T Consensus       151 ~~L~Ls~N~i~~~~~~-~------------------l-----~~l~~~~L~~L~L~~n~l~~~---~~~~-~~~~~~~~~  202 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEH-E------------------L-----EPLQGKTLSFFSLAANSLYSR---VSVD-WGKCMNPFR  202 (844)
T ss_dssp             CEEEEESSCCCCCCSG-G------------------G-----HHHHHCSSCCCEECCSBSCCC---CCCC-CCSSSCTTT
T ss_pred             CEEECCCCcCCeeCHH-H------------------c-----ccccCCccceEECCCCccccc---cccc-hhhcCCccc
Confidence            7777777653221110 0                  0     001  4455555554432221   1111 11122    


Q ss_pred             --cccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc---------CCCCCCCCCCcceEEEeCCCC
Q 045938          233 --SLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK---------LPQSPLSLSSLREIEIYGCSS  301 (681)
Q Consensus       233 --~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---------l~~~~~~l~~L~~L~L~~~~~  301 (681)
                        .|+.|+++++.--..++...     ... ...++++.+.++.+.....         ....+..+             
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~-----~~~-l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l-------------  263 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNF-----SNA-ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL-------------  263 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGG-----GGT-SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT-------------
T ss_pred             cCceeEEecCCCcCchhHHHHH-----Hhh-cCcccccceecccccccccccccccCCCChhhhhcc-------------
Confidence              25555555542111111110     000 0113344444432111000         00011111             


Q ss_pred             ceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccc
Q 045938          302 LVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRR  381 (681)
Q Consensus       302 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  381 (681)
                              ..++|++|++++|......+..+  ..+++|+.|+++++ .++.+....+                      
T Consensus       264 --------~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n-~i~~~~~~~~----------------------  310 (844)
T 3j0a_A          264 --------ARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYN-KINKIADEAF----------------------  310 (844)
T ss_dssp             --------TTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESC-CCCEECTTTT----------------------
T ss_pred             --------ccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCC-cCCCCChHHh----------------------
Confidence                    12445555555544222122222  44455555555542 2222211110                      


Q ss_pred             cCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccc
Q 045938          382 YTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKIL  461 (681)
Q Consensus       382 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~  461 (681)
                      ...++|++|+++++. ++.+.+     .     .+..++. |++|++++|......+..+..+++|++|++++|.+..  
T Consensus       311 ~~l~~L~~L~Ls~N~-l~~~~~-----~-----~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--  376 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNL-LGELYS-----S-----NFYGLPK-VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT--  376 (844)
T ss_dssp             TTCSSCCEEEEESCC-CSCCCS-----C-----SCSSCTT-CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC--
T ss_pred             cCCCCCCEEECCCCC-CCccCH-----H-----HhcCCCC-CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc--
Confidence            011235555555532 222100     0     1445555 9999999987655555568889999999999998764  


Q ss_pred             cCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc--cCcccCCcceeeecccCCCCCccc-cCC
Q 045938          462 PSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK--GLHNLTSLQQLTIGEGGELPSLEE-DDG  538 (681)
Q Consensus       462 ~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~-~~~  538 (681)
                         +..+++|+.+++++|.. ..+|..   ..+++.+++++|... .++.  .+..+++|+.|++++|...+..+. .+.
T Consensus       377 ---i~~~~~L~~L~l~~N~l-~~l~~~---~~~l~~L~ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  448 (844)
T 3j0a_A          377 ---IHFIPSIPDIFLSGNKL-VTLPKI---NLTANLIHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS  448 (844)
T ss_dssp             ---CSSCCSCSEEEEESCCC-CCCCCC---CTTCCEEECCSCCCC-SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred             ---ccCCCCcchhccCCCCc-cccccc---ccccceeecccCccc-cCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence               33378899999998874 466653   457899999998743 3322  345789999999999986543322 355


Q ss_pred             CCCCCceeeeecCcc------------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc
Q 045938          539 LPTNLHRLEIIDNKK------------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL  606 (681)
Q Consensus       539 ~~~~L~~L~l~~~~~------------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l  606 (681)
                      .+++|++|++++|..            +.++++|++|++++|  .+..++...+      ..+++|+.|+++++ ++..+
T Consensus       449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~l  519 (844)
T 3j0a_A          449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN--YLNSLPPGVF------SHLTALRGLSLNSN-RLTVL  519 (844)
T ss_dssp             SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH--HHTTCCTTSS------SSCCSCSEEEEESC-CCSSC
T ss_pred             cCCccccccCCCCccccccccccchhhhcCcccccEEECCCC--cccccChhHc------cchhhhheeECCCC-CCCcc
Confidence            678999999999875            346789999999998  6777776543      56788999999996 78888


Q ss_pred             cccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938          607 SSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       607 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l  650 (681)
                      +..... ++|+.|++++| .+..++.. .+++|++|++++||..
T Consensus       520 ~~~~~~-~~L~~L~Ls~N-~l~~~~~~-~~~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          520 SHNDLP-ANLEILDISRN-QLLAPNPD-VFVSLSVLDITHNKFI  560 (844)
T ss_dssp             CCCCCC-SCCCEEEEEEE-CCCCCCSC-CCSSCCEEEEEEECCC
T ss_pred             Chhhhh-ccccEEECCCC-cCCCCChh-HhCCcCEEEecCCCcc
Confidence            764443 89999999998 55554443 3568999999987743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=7.3e-29  Score=286.76  Aligned_cols=513  Identities=15%  Similarity=0.101  Sum_probs=323.3

Q ss_pred             EEEEeecCCCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCC
Q 045938           35 TLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPK  114 (681)
Q Consensus        35 ~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  114 (681)
                      ..+.++| +++.+|.  ..++|++|+++++. ++.+....++.     +++|+.|+++++........ ..   +..+++
T Consensus         8 ~~dcs~~-~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~~~~~-----l~~L~~LdLs~n~~~~~i~~-~~---f~~L~~   74 (844)
T 3j0a_A            8 IAFYRFC-NLTQVPQ--VLNTTERLLLSFNY-IRTVTASSFPF-----LEQLQLLELGSQYTPLTIDK-EA---FRNLPN   74 (844)
T ss_dssp             EEEESCC-CSSCCCS--SCTTCCEEEEESCC-CCEECSSSCSS-----CCSCSEEEECTTCCCCEECT-TT---TSSCTT
T ss_pred             EEEccCC-CCCCCCC--CCCCcCEEECCCCc-CCccChhHCcc-----cccCeEEeCCCCCCccccCH-HH---hcCCCC
Confidence            4555564 6888988  66899999999987 88887665554     89999999988644333222 12   567888


Q ss_pred             cceEeeccCccccccCCC---CCCCccEEEEccCCCcee-----ecCCCCcccEEEECCCCCceeeccccccCCCCccee
Q 045938          115 LRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLV-----SVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVC  186 (681)
Q Consensus       115 L~~L~l~~c~~l~~~~~~---~l~~L~~L~i~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  186 (681)
                      |+.|+++++. +.+..|.   .+++|++|++++|.....     .+..++                              
T Consensus        75 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~------------------------------  123 (844)
T 3j0a_A           75 LRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK------------------------------  123 (844)
T ss_dssp             CCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS------------------------------
T ss_pred             CCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC------------------------------
Confidence            8888888853 3323333   334555555555432110     133344                              


Q ss_pred             ecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCC
Q 045938          187 RDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCI  266 (681)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~  266 (681)
                                        +|++|++.++.....   .+...+..+++|++|+++++ .++.+.....+    .+.  .++
T Consensus       124 ------------------~L~~L~Ls~N~l~~~---~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~----~l~--~~~  175 (844)
T 3j0a_A          124 ------------------ALTRLDLSKNQIRSL---YLHPSFGKLNSLKSIDFSSN-QIFLVCEHELE----PLQ--GKT  175 (844)
T ss_dssp             ------------------SCCEEEEESCCCCCC---CCCGGGGTCSSCCEEEEESS-CCCCCCSGGGH----HHH--HCS
T ss_pred             ------------------CCCEEECCCCccccc---ccchhHhhCCCCCEEECCCC-cCCeeCHHHcc----ccc--CCc
Confidence                              444444444332221   22234678888888888886 44443333211    111  168


Q ss_pred             ccEEeeeCCcCcccCCCCCCCCCC------cceEEEeCCCCceeec----CCCCCCCceEEEEecCCC--------CCcc
Q 045938          267 LEYIDLRDCQDLVKLPQSPLSLSS------LREIEIYGCSSLVSFP----EVALPSKLKKIEIRECDA--------LKSL  328 (681)
Q Consensus       267 L~~L~l~~~~~~~~l~~~~~~l~~------L~~L~L~~~~~l~~~~----~~~~~~~L~~L~l~~~~~--------l~~~  328 (681)
                      |+.|++++|......|..++.+++      |++|++++|..-...+    ......+++.+.+..+..        +...
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            899999988887767766666655      8888888875222221    122235677777663221        1111


Q ss_pred             ccccc-cCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCc
Q 045938          329 PEAWM-CDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNEL  407 (681)
Q Consensus       329 ~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  407 (681)
                      ....+ ....++|+.|+++++ .+..+....+                      ...++|++|+++++ .++.+.+    
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~----------------------~~l~~L~~L~L~~n-~i~~~~~----  307 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHG-FVFSLNSRVF----------------------ETLKDLKVLNLAYN-KINKIAD----  307 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTC-CCCEECSCCS----------------------SSCCCCCEEEEESC-CCCEECT----
T ss_pred             ChhhhhccccCCccEEECCCC-cccccChhhh----------------------hcCCCCCEEECCCC-cCCCCCh----
Confidence            11111 012356777777664 3333221111                      12335888888774 3333111    


Q ss_pred             chhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC
Q 045938          408 PATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ  487 (681)
Q Consensus       408 ~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~  487 (681)
                       +     .+..++. |++|++++|...+..+..+..+++|++|++++|.+....+..+.++++|+.|++++|. +..++.
T Consensus       308 -~-----~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~  379 (844)
T 3j0a_A          308 -E-----AFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF  379 (844)
T ss_dssp             -T-----TTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS
T ss_pred             -H-----HhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccC
Confidence             0     1444555 8888888887766666778888888899988888877667778888888889888876 333432


Q ss_pred             CCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCC-ccccCCCCCCCceeeeecCcc--------cccCC
Q 045938          488 GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS-LEEDDGLPTNLHRLEIIDNKK--------IWKFS  558 (681)
Q Consensus       488 ~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~--------~~~l~  558 (681)
                          +++|+.|++++|.. ..+|..   ..+++.|++++|...+. .+..++.+++|++|++++|..        ...++
T Consensus       380 ----~~~L~~L~l~~N~l-~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  451 (844)
T 3j0a_A          380 ----IPSIPDIFLSGNKL-VTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP  451 (844)
T ss_dssp             ----CCSCSEEEEESCCC-CCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred             ----CCCcchhccCCCCc-cccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence                67888888888874 355543   46788889988875542 222356789999999999986        23578


Q ss_pred             cccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCCCcc
Q 045938          559 SLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKGLPS  637 (681)
Q Consensus       559 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~  637 (681)
                      +|+.|++++|  .+..++... ........+++|+.|+++++ .+..++. .+..+++|+.|++++| .++.+|...+.+
T Consensus       452 ~L~~L~Ls~N--~l~~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~  526 (844)
T 3j0a_A          452 SLEQLFLGEN--MLQLAWETE-LCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPA  526 (844)
T ss_dssp             TCCBCEEESC--CCSSSCCSC-CCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCS
T ss_pred             ccccccCCCC--ccccccccc-cchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhhc
Confidence            9999999997  443332211 00011245688999999996 7777776 5789999999999998 788888877779


Q ss_pred             cccEEEeCCchhHHhhhccCCCcccccccccceeEEccE
Q 045938          638 SLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPKVKIDFK  676 (681)
Q Consensus       638 ~L~~L~i~~c~~l~~~~~~~~~~~~~~l~~~~~~~~~~~  676 (681)
                      +|+.|++++|..-..     ..   ..+..++.+.+.+|
T Consensus       527 ~L~~L~Ls~N~l~~~-----~~---~~~~~L~~l~l~~N  557 (844)
T 3j0a_A          527 NLEILDISRNQLLAP-----NP---DVFVSLSVLDITHN  557 (844)
T ss_dssp             CCCEEEEEEECCCCC-----CS---CCCSSCCEEEEEEE
T ss_pred             cccEEECCCCcCCCC-----Ch---hHhCCcCEEEecCC
Confidence            999999999864321     11   12345666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=282.12  Aligned_cols=463  Identities=16%  Similarity=0.103  Sum_probs=307.6

Q ss_pred             cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938            9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL   86 (681)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L   86 (681)
                      ...+.++.+...+|..+.    +++++|+++++ .++.++  .++.+++|++|++++|. +..++...++.     +++|
T Consensus        10 ~~~~c~~~~l~~ip~~l~----~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~-----l~~L   78 (570)
T 2z63_A           10 ITYQCMELNFYKIPDNLP----FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQS-----LSHL   78 (570)
T ss_dssp             TEEECCSSCCSSCCSSSC----SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTT-----CTTC
T ss_pred             cEEEeCCCCccccCCCcc----ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCc-CCccCcccccC-----chhC
Confidence            346666666777887543    47999999986 567776  48999999999999986 88887766555     8999


Q ss_pred             ceeeccccCCcccccccCCCccccccCCcceEeeccCcccccc---CCCCCCCccEEEEccCCCc----eeecCCCCccc
Q 045938           87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGT---FPEHLPALEMLVIEGCEEL----LVSVSSLPSLC  159 (681)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~---~~~~l~~L~~L~i~~~~~~----~~~~~~l~~L~  159 (681)
                      ++|++.+.. +..... ..   +..+++|++|+++++ +++..   ....+++|++|++++|...    ...++.+++|+
T Consensus        79 ~~L~L~~n~-l~~~~~-~~---~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~  152 (570)
T 2z63_A           79 STLILTGNP-IQSLAL-GA---FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  152 (570)
T ss_dssp             CEEECTTCC-CCEECT-TT---TTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             CEEeCcCCc-CCccCH-hh---hcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence            999998853 333221 12   567999999999986 34311   1235789999999988532    34677799999


Q ss_pred             EEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCc----ceEeecccCCceeeeeccccccccccccc
Q 045938          160 KFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKL----EELEINDMKEQTYIWKSHNELLQDICSLK  235 (681)
Q Consensus       160 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~L~  235 (681)
                      +|+++++........ .                       ...+.+|    ++|.+.++.....    ..+.+... +|+
T Consensus       153 ~L~l~~n~l~~~~~~-~-----------------------~~~l~~L~~~~~~L~l~~n~l~~~----~~~~~~~~-~L~  203 (570)
T 2z63_A          153 HLDLSSNKIQSIYCT-D-----------------------LRVLHQMPLLNLSLDLSLNPMNFI----QPGAFKEI-RLH  203 (570)
T ss_dssp             EEECTTSCCCEECGG-G-----------------------GHHHHTCTTCCCEEECTTCCCCEE----CTTTTTTC-EEE
T ss_pred             EEeCcCCccceecHH-H-----------------------ccchhccchhhhhcccCCCCceec----CHHHhccC-cce
Confidence            999998875443211 0                       0012344    5667766543332    23333433 899


Q ss_pred             EEeecCCCCccccchhhHHHHHHhhhhccCC--------------------------------ccEEeeeCC-cCcccCC
Q 045938          236 RLTITSCPKLQSLVAEEEKDQQQQLCQLSCI--------------------------------LEYIDLRDC-QDLVKLP  282 (681)
Q Consensus       236 ~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~--------------------------------L~~L~l~~~-~~~~~l~  282 (681)
                      .|+++++..-...    ....+..+    ++                                ++.++++++ ......+
T Consensus       204 ~L~l~~n~~~~~~----~~~~~~~l----~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~  275 (570)
T 2z63_A          204 KLTLRNNFDSLNV----MKTCIQGL----AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII  275 (570)
T ss_dssp             EEEEESCCSCTTH----HHHHHHTT----TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST
T ss_pred             eEecccccccccc----hhhhhcCc----cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch
Confidence            9999886321110    00111111    22                                344444444 2223345


Q ss_pred             CCCCCCCCcceEEEeCCCCceeecCC-CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCC
Q 045938          283 QSPLSLSSLREIEIYGCSSLVSFPEV-ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPP  361 (681)
Q Consensus       283 ~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  361 (681)
                      ..+..+++|++|++++|. +..++.. ..+ +|++|++++|. +..+|.    ..+++|+.|+++++.....+       
T Consensus       276 ~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~----~~l~~L~~L~l~~n~~~~~~-------  341 (570)
T 2z63_A          276 DLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKGGNAF-------  341 (570)
T ss_dssp             TTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCB-CSSCCB----CBCSSCCEEEEESCBSCCBC-------
T ss_pred             hhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCc-ccccCc----ccccccCEEeCcCCcccccc-------
Confidence            555566666666666554 4444422 223 66666666665 334443    24556666666654322211       


Q ss_pred             CceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhc
Q 045938          362 SLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL  441 (681)
Q Consensus       362 ~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l  441 (681)
                                       .. ..+++|++|+++++. ++...   ..+..     +..++. |++|++++|...+. +..+
T Consensus       342 -----------------~~-~~~~~L~~L~l~~n~-l~~~~---~~~~~-----~~~~~~-L~~L~l~~n~l~~~-~~~~  392 (570)
T 2z63_A          342 -----------------SE-VDLPSLEFLDLSRNG-LSFKG---CCSQS-----DFGTTS-LKYLDLSFNGVITM-SSNF  392 (570)
T ss_dssp             -----------------CC-CBCTTCCEEECCSSC-CBEEE---EEEHH-----HHTCSC-CCEEECCSCSEEEE-EEEE
T ss_pred             -----------------cc-ccCCCCCEEeCcCCc-cCccc---ccccc-----ccccCc-cCEEECCCCccccc-cccc
Confidence                             11 234578899988753 33210   00111     344555 99999999865543 4448


Q ss_pred             ccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccccc-ccccccCcccCCc
Q 045938          442 DNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRL-QVLPKGLHNLTSL  519 (681)
Q Consensus       442 ~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~l~~l~~L  519 (681)
                      ..+++|++|++++|.+.+..+ ..+.++++|++|++++|......+..+..+++|++|++++|... ..+|..+..+++|
T Consensus       393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence            899999999999998877655 46788999999999999866667777788899999999999865 4688888999999


Q ss_pred             ceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938          520 QQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC  568 (681)
Q Consensus       520 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~  568 (681)
                      ++|++++|...+..|..++.+++|++|++++|..       +.++++|++|++++|
T Consensus       473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            9999999987776677788999999999999976       447899999999997

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.9e-29  Score=277.61  Aligned_cols=455  Identities=16%  Similarity=0.168  Sum_probs=251.4

Q ss_pred             CCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeecc
Q 045938           43 MCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILR  122 (681)
Q Consensus        43 ~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  122 (681)
                      .++++|. .-.+++++|+++++. ++.++...+..     +++|++|+++++. +...... .   +..+++|++|++++
T Consensus        18 ~l~~ip~-~l~~~l~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~Ls~n~-i~~i~~~-~---~~~l~~L~~L~L~~   85 (570)
T 2z63_A           18 NFYKIPD-NLPFSTKNLDLSFNP-LRHLGSYSFFS-----FPELQVLDLSRCE-IQTIEDG-A---YQSLSHLSTLILTG   85 (570)
T ss_dssp             CCSSCCS-SSCSSCCEEECCSCC-CCEECTTTTTT-----CSSCCEEECTTCC-CCEECTT-T---TTTCTTCCEEECTT
T ss_pred             CccccCC-CccccccEEEccCCc-cCccChhHhhC-----CCCceEEECCCCc-CCccCcc-c---ccCchhCCEEeCcC
Confidence            5677775 223689999999997 88887765554     9999999999873 4433222 2   56799999999998


Q ss_pred             CccccccCC---CCCCCccEEEEccCCCce---eecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCCccccc
Q 045938          123 CSKLKGTFP---EHLPALEMLVIEGCEELL---VSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLA  196 (681)
Q Consensus       123 c~~l~~~~~---~~l~~L~~L~i~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (681)
                      +. ++...|   ..+++|++|+++++....   ..+..+++|++|++++|......                        
T Consensus        86 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~------------------------  140 (570)
T 2z63_A           86 NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK------------------------  140 (570)
T ss_dssp             CC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC------------------------
T ss_pred             Cc-CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec------------------------
Confidence            64 442222   345677777777664221   13555666666666666432210                        


Q ss_pred             CCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCc----cEEee
Q 045938          197 GPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCIL----EYIDL  272 (681)
Q Consensus       197 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L----~~L~l  272 (681)
                                                 ....+..+++|++|+++++ .++.++...    +..+    ++|    +++++
T Consensus       141 ---------------------------lp~~~~~l~~L~~L~l~~n-~l~~~~~~~----~~~l----~~L~~~~~~L~l  184 (570)
T 2z63_A          141 ---------------------------LPEYFSNLTNLEHLDLSSN-KIQSIYCTD----LRVL----HQMPLLNLSLDL  184 (570)
T ss_dssp             ---------------------------CCGGGGGCTTCCEEECTTS-CCCEECGGG----GHHH----HTCTTCCCEEEC
T ss_pred             ---------------------------ChhhhcccCCCCEEeCcCC-ccceecHHH----ccch----hccchhhhhccc
Confidence                                       0122344455555555544 333332221    1111    222    44555


Q ss_pred             eCCcCcccCCCCCCCCCCcceEEEeCCC------------------------------CceeecCCCC--C--CCceEEE
Q 045938          273 RDCQDLVKLPQSPLSLSSLREIEIYGCS------------------------------SLVSFPEVAL--P--SKLKKIE  318 (681)
Q Consensus       273 ~~~~~~~~l~~~~~~l~~L~~L~L~~~~------------------------------~l~~~~~~~~--~--~~L~~L~  318 (681)
                      ++|......+..+... +|++|++++|.                              .+..++....  +  -.++.++
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            5544422223223222 45555554431                              1111111110  1  1244555


Q ss_pred             EecCCCCCc-cccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCC
Q 045938          319 IRECDALKS-LPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPS  397 (681)
Q Consensus       319 l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  397 (681)
                      +.++..+.. .+..+  ..+++|+.|+++++ .++.++..                       .... +|++|+++++. 
T Consensus       264 l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~-~l~~l~~~-----------------------~~~~-~L~~L~l~~n~-  315 (570)
T 2z63_A          264 LAYLDYYLDDIIDLF--NCLTNVSSFSLVSV-TIERVKDF-----------------------SYNF-GWQHLELVNCK-  315 (570)
T ss_dssp             EEETTEEESCSTTTT--GGGTTCSEEEEESC-EECSCCBC-----------------------CSCC-CCSEEEEESCB-
T ss_pred             hhcchhhhhhchhhh--cCcCcccEEEecCc-cchhhhhh-----------------------hccC-CccEEeeccCc-
Confidence            555422222 22222  44566666666654 23332211                       0111 47777777653 


Q ss_pred             cccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccc--cCcCcCcccccEEe
Q 045938          398 LTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKIL--PSGLHNLRQLQEIG  475 (681)
Q Consensus       398 l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~--~~~l~~l~~L~~L~  475 (681)
                      +.. ++            ...++. |++|++++|......+.  ..+++|++|++++|.+....  +..+.++++|++|+
T Consensus       316 ~~~-l~------------~~~l~~-L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  379 (570)
T 2z63_A          316 FGQ-FP------------TLKLKS-LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD  379 (570)
T ss_dssp             CSS-CC------------BCBCSS-CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred             ccc-cC------------cccccc-cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence            222 22            223444 88888887765544432  67778888888887766543  45566778888888


Q ss_pred             eccCCCceecCCCCCCCCCcceEeecccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-
Q 045938          476 IWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-  553 (681)
Q Consensus       476 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-  553 (681)
                      +++|. +..++..+..+++|++|++++|......+ ..+..+++|++|++++|...+..+..++.+++|++|++++|.. 
T Consensus       380 l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  458 (570)
T 2z63_A          380 LSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  458 (570)
T ss_dssp             CCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             CCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence            88776 33444446667788888888877555444 3567778888888888876666666677788888888888764 


Q ss_pred             -------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCC
Q 045938          554 -------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCP  625 (681)
Q Consensus       554 -------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  625 (681)
                             +..+++|++|++++|  .+..++...+      ..+++|+.|+++++ .+..++. .+..+++|+.|++++|+
T Consensus       459 ~~~~p~~~~~l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          459 ENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAF------NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             GGEECSCCTTCTTCCEEECTTS--CCCEECTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccchhhhhcccCCCEEECCCC--ccccCChhhh------hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence                   235666777777665  3333321111      23344555555543 3444433 34455555555555553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=1.4e-29  Score=279.63  Aligned_cols=472  Identities=17%  Similarity=0.196  Sum_probs=262.0

Q ss_pred             ceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcc
Q 045938           10 QFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLE   87 (681)
Q Consensus        10 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~   87 (681)
                      +-+.++.+...+|..+    .++|++|+++++ .++.++  .++.+++|++|+++++. +..++.+.++.     +++|+
T Consensus         9 ~c~~~~~~l~~ip~~~----~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~-----l~~L~   77 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGL----TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYS-----LGSLE   77 (549)
T ss_dssp             EEECTTSCCSSCCSCC----CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTT-----CTTCC
T ss_pred             eEECCCCccccccccC----CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChhhccc-----cccCC
Confidence            3455666677777754    367888888886 466664  38888888888888886 77776554444     77888


Q ss_pred             eeeccccCCcccccccCCCccccccCCcceEeeccCccccc-cCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCC
Q 045938           88 TLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKG-TFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGC  166 (681)
Q Consensus        88 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~  166 (681)
                      +|+++++. +......    .+..+++|++|+++++. +++ ..|.                  .+..+++|++|++++|
T Consensus        78 ~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~------------------~~~~l~~L~~L~L~~n  133 (549)
T 2z81_A           78 HLDLSDNH-LSSLSSS----WFGPLSSLKYLNLMGNP-YQTLGVTS------------------LFPNLTNLQTLRIGNV  133 (549)
T ss_dssp             EEECTTSC-CCSCCHH----HHTTCTTCCEEECTTCC-CSSSCSSC------------------SCTTCTTCCEEEEEES
T ss_pred             EEECCCCc-cCccCHH----HhccCCCCcEEECCCCc-ccccchhh------------------hhhccCCccEEECCCC
Confidence            88887752 2222111    13456777777777653 221 1111                  2333445555555544


Q ss_pred             CCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCcc
Q 045938          167 KKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQ  246 (681)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  246 (681)
                      .........                       ....+++|++|++.++....    .....+..+++|++|+++++ .+.
T Consensus       134 ~~~~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n-~~~  185 (549)
T 2z81_A          134 ETFSEIRRI-----------------------DFAGLTSLNELEIKALSLRN----YQSQSLKSIRDIHHLTLHLS-ESA  185 (549)
T ss_dssp             SSCCEECTT-----------------------TTTTCCEEEEEEEEETTCCE----ECTTTTTTCSEEEEEEEECS-BST
T ss_pred             ccccccCHh-----------------------hhhcccccCeeeccCCcccc----cChhhhhccccCceEecccC-ccc
Confidence            321111000                       00123444444444443222    12233466778888888776 333


Q ss_pred             ccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC--CC-CCCCCCCcceEEEeCCCCceeec------CCCCCCCceEE
Q 045938          247 SLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL--PQ-SPLSLSSLREIEIYGCSSLVSFP------EVALPSKLKKI  317 (681)
Q Consensus       247 ~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l--~~-~~~~l~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L  317 (681)
                      .++..        ....+++|++|++++|...+..  +. ....+++|+.|++++|. +....      ....+++|+.+
T Consensus       186 ~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l  256 (549)
T 2z81_A          186 FLLEI--------FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEV  256 (549)
T ss_dssp             THHHH--------HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEE
T ss_pred             ccchh--------hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhcccccc
Confidence            33221        1122477777777777653321  11 12345666666666553 22110      11223455555


Q ss_pred             EEecCCCCCcccccc-----ccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeee
Q 045938          318 EIRECDALKSLPEAW-----MCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHI  392 (681)
Q Consensus       318 ~l~~~~~l~~~~~~~-----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l  392 (681)
                      ++++|. +..++...     ....+.                                               +++.+++
T Consensus       257 ~l~~~~-~~~~~~~~~~~~~~~~~l~-----------------------------------------------~L~~L~l  288 (549)
T 2z81_A          257 EFDDCT-LNGLGDFNPSESDVVSELG-----------------------------------------------KVETVTI  288 (549)
T ss_dssp             EEESCE-EECCSCCCCCTTTCCCCCT-----------------------------------------------TCCEEEE
T ss_pred             cccccc-ccccccccccchhhhhhhc-----------------------------------------------ccccccc
Confidence            555543 11110000     001122                                               3444444


Q ss_pred             ccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhc-ccCCCccEEEeecccCccccc---CcCcCc
Q 045938          393 SRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL-DNNTSLETISISECENLKILP---SGLHNL  468 (681)
Q Consensus       393 ~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ls~~~~~~~~~---~~l~~l  468 (681)
                      .++. +........++.      ......+|++|++++|.. ..+|..+ ..+++|++|++++|.+.+..|   ..++.+
T Consensus       289 ~~~~-i~~~~~~~~l~~------~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l  360 (549)
T 2z81_A          289 RRLH-IPQFYLFYDLST------VYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW  360 (549)
T ss_dssp             ESCB-CSCGGGSCCCCH------HHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred             cccc-cchhhhcccchh------hhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence            4422 111000001110      001112488888888754 3455444 468888888888888776553   346677


Q ss_pred             ccccEEeeccCCCceecC---CCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCce
Q 045938          469 RQLQEIGIWECENLVSFP---QGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHR  545 (681)
Q Consensus       469 ~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  545 (681)
                      ++|++|++++|.. ..++   ..+..+++|++|++++|. +..+|..++.+++|++|++++|... .++..  .+++|++
T Consensus       361 ~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~--~~~~L~~  435 (549)
T 2z81_A          361 PSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC--IPQTLEV  435 (549)
T ss_dssp             TTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCS-CCCTT--SCTTCSE
T ss_pred             ccCcEEEccCCcc-cccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcc-cccch--hcCCceE
Confidence            8888888888763 3332   235567788888888886 4467777777888888888888743 34332  2367888


Q ss_pred             eeeecCcc---cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEee
Q 045938          546 LEIIDNKK---IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLEL  621 (681)
Q Consensus       546 L~l~~~~~---~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l  621 (681)
                      |++++|+.   ...+++|++|++++|  .+..+|...        .+++|+.|+++++ +++.++. .+..+++|+.|++
T Consensus       436 L~Ls~N~l~~~~~~l~~L~~L~Ls~N--~l~~ip~~~--------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          436 LDVSNNNLDSFSLFLPRLQELYISRN--KLKTLPDAS--------LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             EECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCCGG--------GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred             EECCCCChhhhcccCChhcEEECCCC--ccCcCCCcc--------cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEe
Confidence            88887765   336777888888876  555666532        4566777777764 5555554 3566777777777


Q ss_pred             cCCC
Q 045938          622 EDCP  625 (681)
Q Consensus       622 ~~c~  625 (681)
                      ++|+
T Consensus       505 ~~N~  508 (549)
T 2z81_A          505 HTNP  508 (549)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            7765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=8.5e-30  Score=281.47  Aligned_cols=473  Identities=15%  Similarity=0.144  Sum_probs=296.0

Q ss_pred             CCCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeec
Q 045938           42 GMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHIL  121 (681)
Q Consensus        42 ~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  121 (681)
                      +.++.+|. +..++|++|+++++. ++.++...++.     +++|++|+++++. +...... .   +..+++|++|+++
T Consensus        15 ~~l~~ip~-~~~~~L~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~Ls~n~-i~~~~~~-~---~~~l~~L~~L~Ls   82 (549)
T 2z81_A           15 RSFTSIPS-GLTAAMKSLDLSFNK-ITYIGHGDLRA-----CANLQVLILKSSR-INTIEGD-A---FYSLGSLEHLDLS   82 (549)
T ss_dssp             SCCSSCCS-CCCTTCCEEECCSSC-CCEECSSTTSS-----CTTCCEEECTTSC-CCEECTT-T---TTTCTTCCEEECT
T ss_pred             Cccccccc-cCCCCccEEECcCCc-cCccChhhhhc-----CCcccEEECCCCC-cCccChh-h---ccccccCCEEECC
Confidence            36778875 223789999999887 77776554443     7788888887742 2222111 1   3456666666666


Q ss_pred             cCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCC
Q 045938          122 RCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKP  201 (681)
Q Consensus       122 ~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (681)
                      ++ +++ .++                 ...+..+++|++|++++|......                             
T Consensus        83 ~n-~l~-~~~-----------------~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------------  114 (549)
T 2z81_A           83 DN-HLS-SLS-----------------SSWFGPLSSLKYLNLMGNPYQTLG-----------------------------  114 (549)
T ss_dssp             TS-CCC-SCC-----------------HHHHTTCTTCCEEECTTCCCSSSC-----------------------------
T ss_pred             CC-ccC-ccC-----------------HHHhccCCCCcEEECCCCcccccc-----------------------------
Confidence            64 222 111                 013556777777777777532210                             


Q ss_pred             CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC
Q 045938          202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL  281 (681)
Q Consensus       202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l  281 (681)
                                            ....+..+++|++|+++++..+..++...+        ..+++|++|++++|...+..
T Consensus       115 ----------------------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A          115 ----------------------VTSLFPNLTNLQTLRIGNVETFSEIRRIDF--------AGLTSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             ----------------------SSCSCTTCTTCCEEEEEESSSCCEECTTTT--------TTCCEEEEEEEEETTCCEEC
T ss_pred             ----------------------hhhhhhccCCccEEECCCCccccccCHhhh--------hcccccCeeeccCCcccccC
Confidence                                  011234556666666666544444433211        12366667777666665556


Q ss_pred             CCCCCCCCCcceEEEeCCCCceeecCC--CCCCCceEEEEecCCCCCccc--cccccCCCCccceeeeccCCCccccccc
Q 045938          282 PQSPLSLSSLREIEIYGCSSLVSFPEV--ALPSKLKKIEIRECDALKSLP--EAWMCDTNSSLEILEIWICNSLTYIAGV  357 (681)
Q Consensus       282 ~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~  357 (681)
                      |..++.+++|++|++++|. +..++..  ..+++|++|++++|. +...+  .......+++|+.|+++++ .+.+....
T Consensus       165 ~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~  241 (549)
T 2z81_A          165 SQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFN  241 (549)
T ss_dssp             TTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHH
T ss_pred             hhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceecccc-ccchhHHH
Confidence            6667777777777777654 3332221  235677777777765 33221  1111134566777777664 22211100


Q ss_pred             cCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcch-hhhhcccCCCCCCCcEEEEcCCCCchh
Q 045938          358 QLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPA-TLESLEVGNLPPSLKSLDVWSCSELES  436 (681)
Q Consensus       358 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~~~~~p~~L~~L~l~~~~~~~~  436 (681)
                      ....                  .....++|+++++++|.- ..+-   .++. ...  .+..++. ++.|++.++.....
T Consensus       242 ~l~~------------------~~~~~~~L~~l~l~~~~~-~~~~---~~~~~~~~--~~~~l~~-L~~L~l~~~~i~~~  296 (549)
T 2z81_A          242 ELLK------------------LLRYILELSEVEFDDCTL-NGLG---DFNPSESD--VVSELGK-VETVTIRRLHIPQF  296 (549)
T ss_dssp             HHHG------------------GGGGCTTCCEEEEESCEE-ECCS---CCCCCTTT--CCCCCTT-CCEEEEESCBCSCG
T ss_pred             HHHH------------------Hhhhhccccccccccccc-cccc---cccccchh--hhhhhcc-cccccccccccchh
Confidence            0000                  001122466666666531 1100   0000 000  0334444 99999998865432


Q ss_pred             H-----HHhcccCCCccEEEeecccCcccccCcC-cCcccccEEeeccCCCceecC---CCCCCCCCcceEeeccccccc
Q 045938          437 I-----AERLDNNTSLETISISECENLKILPSGL-HNLRQLQEIGIWECENLVSFP---QGGLPCAKLTRLEISYCKRLQ  507 (681)
Q Consensus       437 ~-----~~~l~~l~~L~~L~ls~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~~~~l~  507 (681)
                      .     +......++|+.|++++|.+. .+|..+ +++++|++|++++|...+.++   ..+..+++|++|++++|....
T Consensus       297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  375 (549)
T 2z81_A          297 YLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS  375 (549)
T ss_dssp             GGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred             hhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence            1     112344678999999999875 456555 579999999999998665442   346778999999999998543


Q ss_pred             ccc--ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCccc--c--cCCcccEEEEeccCCCCcCCCccccc
Q 045938          508 VLP--KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKI--W--KFSSLRQLTISGCDDDMVSFPPEDIR  581 (681)
Q Consensus       508 ~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~--~l~~L~~L~l~~~~~~~~~l~~~~~~  581 (681)
                      ..+  ..+..+++|++|++++|... .+|..++.+++|++|++++|..-  .  -.++|++|++++|  .+..++.    
T Consensus       376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N--~l~~~~~----  448 (549)
T 2z81_A          376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN--NLDSFSL----  448 (549)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSS--CCSCCCC----
T ss_pred             cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCC--Chhhhcc----
Confidence            221  35788999999999999754 67888899999999999999861  1  2369999999998  5555542    


Q ss_pred             cccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCchh
Q 045938          582 LRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCPL  649 (681)
Q Consensus       582 ~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~  649 (681)
                            .+++|++|+++++ +++.+|. ...+++|++|++++| .++.++..  ..+++|++|++++|+.
T Consensus       449 ------~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          449 ------FLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             ------CCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             ------cCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence                  5679999999997 8889987 467999999999998 67776653  4579999999999873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=4e-29  Score=279.36  Aligned_cols=255  Identities=14%  Similarity=0.146  Sum_probs=156.5

Q ss_pred             cccccccccEEeecCCCCccc--cchhhHHHHHHhh--hhccCCccEEeeeCCcCcccCCC--CCCCCCCcceEEEeCCC
Q 045938          227 LLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQQL--CQLSCILEYIDLRDCQDLVKLPQ--SPLSLSSLREIEIYGCS  300 (681)
Q Consensus       227 ~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~L~~~~  300 (681)
                      .+..+++|++|+++++..++.  +|...     ..+  ...+++|++|++++|... .+|.  .++.+++|++|++++|.
T Consensus       268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-----~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          268 FLKALPEMQLINVACNRGISGEQLKDDW-----QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             TTTTCSSCCEEECTTCTTSCHHHHHHHH-----HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred             HHhcCCCCCEEECcCCCCCccccchHHH-----HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence            457788888888888753553  44432     111  123478999999988874 8888  78889999999998876


Q ss_pred             CceeecCCCCCCCceEEEEecCCCCCccccccccCCCCc-cceeeeccCCCccccccccCCCCceeEEEecccccccccc
Q 045938          301 SLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSS-LEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSS  379 (681)
Q Consensus       301 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~  379 (681)
                      ....+|....+++|++|++++|. +..+|..+  ..+++ |+.|+++++. ++.++..-.                    
T Consensus       342 l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l--~~l~~~L~~L~Ls~N~-l~~lp~~~~--------------------  397 (636)
T 4eco_A          342 LEGKLPAFGSEIKLASLNLAYNQ-ITEIPANF--CGFTEQVENLSFAHNK-LKYIPNIFD--------------------  397 (636)
T ss_dssp             CEEECCCCEEEEEESEEECCSSE-EEECCTTS--EEECTTCCEEECCSSC-CSSCCSCCC--------------------
T ss_pred             CccchhhhCCCCCCCEEECCCCc-cccccHhh--hhhcccCcEEEccCCc-Ccccchhhh--------------------
Confidence            33377755567888888888876 55666654  56677 8888887742 333321100                    


Q ss_pred             cccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcc-------cCCCccEEEe
Q 045938          380 RRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLD-------NNTSLETISI  452 (681)
Q Consensus       380 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l  452 (681)
                                                          ...++ +|++|++++|.+.+..|..+.       .+++|++|++
T Consensus       398 ------------------------------------~~~l~-~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          398 ------------------------------------AKSVS-VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             ------------------------------------TTCSS-CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             ------------------------------------hcccC-ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence                                                00111 266666666655555555455       5566666666


Q ss_pred             ecccCcccccCcCcCcccccEEeeccCCCceecCCCCCC--------CCCcceEeeccccccccccccCc--ccCCccee
Q 045938          453 SECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLP--------CAKLTRLEISYCKRLQVLPKGLH--NLTSLQQL  522 (681)
Q Consensus       453 s~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~--------~~~L~~L~l~~~~~l~~~~~~l~--~l~~L~~L  522 (681)
                      ++|.+....+..+..+++|++|++++|... .+|.....        +++|++|++++|... .+|..+.  .+++|+.|
T Consensus       441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L  518 (636)
T 4eco_A          441 SNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI  518 (636)
T ss_dssp             CSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE
T ss_pred             cCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE
Confidence            666665322222344666666666666533 55543332        126777777776643 5666555  66777777


Q ss_pred             eecccCCCCCccccCCCCCCCceeeeecC
Q 045938          523 TIGEGGELPSLEEDDGLPTNLHRLEIIDN  551 (681)
Q Consensus       523 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  551 (681)
                      ++++|...+ +|..++.+++|++|++++|
T Consensus       519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             ECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred             ECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence            777776554 5555555565666655443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.8e-28  Score=263.32  Aligned_cols=211  Identities=15%  Similarity=0.143  Sum_probs=164.4

Q ss_pred             CCcEEEEcCCCCchhHHHhc-----ccCCCccEEEeecccCccccc-CcCcCc---ccccEEeeccCCCceecCCCCCCC
Q 045938          422 SLKSLDVWSCSELESIAERL-----DNNTSLETISISECENLKILP-SGLHNL---RQLQEIGIWECENLVSFPQGGLPC  492 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~ls~~~~~~~~~-~~l~~l---~~L~~L~l~~~~~l~~l~~~~~~~  492 (681)
                      +|++|++++|...+.+|..+     +++++|+.+++++|.+  .+| ..+..+   .+|+.|++++|... .++. ...+
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~l  323 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC-PSKI  323 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC-CSSC
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cccc-hhhC
Confidence            48888888876665666666     7778888888887776  334 233333   56888888887633 2221 2567


Q ss_pred             CCcceEeeccccccccccccCcccCCcceeeecccCCCC--CccccCCCCCCCceeeeecCccc--------ccCCcccE
Q 045938          493 AKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELP--SLEEDDGLPTNLHRLEIIDNKKI--------WKFSSLRQ  562 (681)
Q Consensus       493 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~--------~~l~~L~~  562 (681)
                      ++|++|++++|......|..++.+++|++|++++|...+  .+|..++.+++|++|++++|...        ..+++|++
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            899999999999877788889999999999999998765  55667889999999999999872        35789999


Q ss_pred             EEEeccCCCCc-CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccc
Q 045938          563 LTISGCDDDMV-SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSL  639 (681)
Q Consensus       563 L~l~~~~~~~~-~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L  639 (681)
                      |++++|  .+. .++.         ..+++|+.|+++++ ++..+|..+..+++|++|++++| .++.+|..  ..+++|
T Consensus       404 L~Ls~N--~l~~~~~~---------~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L  470 (520)
T 2z7x_B          404 LNMSSN--ILTDTIFR---------CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSL  470 (520)
T ss_dssp             EECCSS--CCCGGGGG---------SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             EECcCC--CCCcchhh---------hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcc
Confidence            999997  332 2222         13379999999997 88899998889999999999998 78888874  347899


Q ss_pred             cEEEeCCchh
Q 045938          640 LQLYIGGCPL  649 (681)
Q Consensus       640 ~~L~i~~c~~  649 (681)
                      ++|++++||.
T Consensus       471 ~~L~l~~N~~  480 (520)
T 2z7x_B          471 QKIWLHTNPW  480 (520)
T ss_dssp             CEEECCSSCB
T ss_pred             cEEECcCCCC
Confidence            9999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=5.2e-27  Score=257.22  Aligned_cols=452  Identities=14%  Similarity=0.044  Sum_probs=271.9

Q ss_pred             cceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCccCCCc
Q 045938            9 EQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCL   86 (681)
Q Consensus         9 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L   86 (681)
                      +++++++++...+|..+.    ++|++|++++| .++.+++  ++.+++|++|+++++. +..+.+..++.     +++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~----~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-----l~~L   71 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS----QKTTILNISQN-YISELWTSDILSLSKLRILIISHNR-IQYLDISVFKF-----NQEL   71 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC----TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTT-----CTTC
T ss_pred             ceEecCCCCccccccccc----ccccEEECCCC-cccccChhhccccccccEEecCCCc-cCCcChHHhhc-----ccCC
Confidence            578899999888887653    78999999997 5777763  8999999999999997 88876655554     8999


Q ss_pred             ceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCC---CCCCCccEEEEccCCCceeecCCCCcc--cEE
Q 045938           87 ETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEELLVSVSSLPSL--CKF  161 (681)
Q Consensus        87 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~L~~L~i~~~~~~~~~~~~l~~L--~~L  161 (681)
                      ++|++++. .+..+..      . .+++|++|+++++.-....+|   ..+++|++|+++++......+..+++|  ++|
T Consensus        72 ~~L~Ls~N-~l~~lp~------~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           72 EYLDLSHN-KLVKISC------H-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV  143 (520)
T ss_dssp             CEEECCSS-CCCEEEC------C-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEE
T ss_pred             CEEecCCC-ceeecCc------c-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEE
Confidence            99999885 3333322      2 589999999998643221344   357899999999887554566677777  999


Q ss_pred             EECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcc--eE--eecccCCceeeeecccccccccccccEE
Q 045938          162 IIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE--EL--EINDMKEQTYIWKSHNELLQDICSLKRL  237 (681)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~L--~l~~~~~~~~~~~~~~~~~~~~~~L~~L  237 (681)
                      ++++|....                         .+..|..+.+++  .+  .+.++....   ..+...+..+++|+.|
T Consensus       144 ~l~~n~l~~-------------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~---~~~~~~~~~l~~L~~L  195 (520)
T 2z7x_B          144 LLVLGETYG-------------------------EKEDPEGLQDFNTESLHIVFPTNKEFH---FILDVSVKTVANLELS  195 (520)
T ss_dssp             EEEECTTTT-------------------------SSCCTTTTTTCCEEEEEEECCSSSCCC---CCCCCCCTTCSEEEEC
T ss_pred             Eeecccccc-------------------------cccccccccccccceEEEEeccCcchh---hhhhhhhhcccceeec
Confidence            999886410                         011122233332  12  222211111   1223334455666666


Q ss_pred             eecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCC---CCCCCcceEEEeCCCCceeecCC------
Q 045938          238 TITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSP---LSLSSLREIEIYGCSSLVSFPEV------  308 (681)
Q Consensus       238 ~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~---~~l~~L~~L~L~~~~~l~~~~~~------  308 (681)
                      +++++........  ....+.. ...+++|++|++++|......+..+   ...++|++|++++|.....+|..      
T Consensus       196 ~l~~n~~~~~~~~--~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  272 (520)
T 2z7x_B          196 NIKCVLEDNKCSY--FLSILAK-LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG  272 (520)
T ss_dssp             CEEECCSTTTTHH--HHHHHHG-GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred             cccccccccccce--eecchhh-hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc
Confidence            6665431100000  0011111 1233556666655554322111000   01235666666555421133322      


Q ss_pred             CCCCCceEEEEecCCCCCccccccccC--CCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCC
Q 045938          309 ALPSKLKKIEIRECDALKSLPEAWMCD--TNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSL  386 (681)
Q Consensus       309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  386 (681)
                      ..+++|+.+++++|..  .+|...+..  ...+|+.|+++++. +...+.   +.                     ..++
T Consensus       273 ~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~---------------------~l~~  325 (520)
T 2z7x_B          273 TSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC---PS---------------------KISP  325 (520)
T ss_dssp             CCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC---CS---------------------SCCC
T ss_pred             ccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccc---hh---------------------hCCc
Confidence            3355566666666553  344211100  11446666666542 211110   00                     1124


Q ss_pred             cceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccccC-
Q 045938          387 LEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKILPS-  463 (681)
Q Consensus       387 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~-  463 (681)
                      |++|+++++. ++...     +.     .+..++. |++|++++|...+  .+|..+..+++|++|++++|.+.+.+|. 
T Consensus       326 L~~L~Ls~n~-l~~~~-----~~-----~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~  393 (520)
T 2z7x_B          326 FLHLDFSNNL-LTDTV-----FE-----NCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG  393 (520)
T ss_dssp             CCEEECCSSC-CCTTT-----TT-----TCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred             ccEEEeECCc-cChhh-----hh-----hhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence            6666666542 22100     11     1445555 9999999987765  5667788999999999999988874454 


Q ss_pred             cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCcccc-CCCCCC
Q 045938          464 GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED-DGLPTN  542 (681)
Q Consensus       464 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~  542 (681)
                      .+..+++|++|++++|...+.++..+.  ++|++|++++|.. ..+|..+..+++|++|++++|... .+|.. +..+++
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  469 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS  469 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence            477789999999999886555555443  6899999999874 478887788999999999998755 55554 666777


Q ss_pred             CceeeeecCcc
Q 045938          543 LHRLEIIDNKK  553 (681)
Q Consensus       543 L~~L~l~~~~~  553 (681)
                      |++|++++|+.
T Consensus       470 L~~L~l~~N~~  480 (520)
T 2z7x_B          470 LQKIWLHTNPW  480 (520)
T ss_dssp             CCEEECCSSCB
T ss_pred             ccEEECcCCCC
Confidence            77777776664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.2e-28  Score=275.54  Aligned_cols=336  Identities=16%  Similarity=0.156  Sum_probs=200.7

Q ss_pred             cCCccEEeeeCCcCccc-----------------CCCCCC--CCCCcceEEEeCCCCceeec-CCCCCCCceEEEEecCC
Q 045938          264 SCILEYIDLRDCQDLVK-----------------LPQSPL--SLSSLREIEIYGCSSLVSFP-EVALPSKLKKIEIRECD  323 (681)
Q Consensus       264 ~~~L~~L~l~~~~~~~~-----------------l~~~~~--~l~~L~~L~L~~~~~l~~~~-~~~~~~~L~~L~l~~~~  323 (681)
                      +++|++|++++|...+.                 +|..++  ++++|++|++++|.....+| ....+++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            36677777776665332                 666666  67777777777666555554 23446677777777665


Q ss_pred             CCC--cccccccc----CCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCC
Q 045938          324 ALK--SLPEAWMC----DTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPS  397 (681)
Q Consensus       324 ~l~--~~~~~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  397 (681)
                      .+.  .+|..+..    ..+++|+.|++++| .++.++.....                     ...++|++|+++++. 
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l---------------------~~l~~L~~L~L~~N~-  341 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSL---------------------QKMKKLGMLECLYNQ-  341 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHH---------------------TTCTTCCEEECCSCC-
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhh---------------------ccCCCCCEEeCcCCc-
Confidence            333  35544310    12266777777664 33343320000                     011235666655532 


Q ss_pred             cc-cccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCC-ccEEEeecccCcccccCcCcCcc--cccE
Q 045938          398 LT-CIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTS-LETISISECENLKILPSGLHNLR--QLQE  473 (681)
Q Consensus       398 l~-~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~ls~~~~~~~~~~~l~~l~--~L~~  473 (681)
                      ++ . ++           .++.++. |++|++++|... .+|..+..+++ |++|++++|.+. .+|..+...+  +|+.
T Consensus       342 l~g~-ip-----------~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~  406 (636)
T 4eco_A          342 LEGK-LP-----------AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA  406 (636)
T ss_dssp             CEEE-CC-----------CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred             Cccc-hh-----------hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence            22 1 11           0233333 777777776544 55666777777 777777777766 5566555433  6777


Q ss_pred             EeeccCCCceecCCCCC-------CCCCcceEeeccccccccccccC-cccCCcceeeecccCCCCCccccCCC------
Q 045938          474 IGIWECENLVSFPQGGL-------PCAKLTRLEISYCKRLQVLPKGL-HNLTSLQQLTIGEGGELPSLEEDDGL------  539 (681)
Q Consensus       474 L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~------  539 (681)
                      |++++|...+.+|..+.       .+++|++|++++|... .+|..+ ..+++|++|++++|... .+|.....      
T Consensus       407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~  484 (636)
T 4eco_A          407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENF  484 (636)
T ss_dssp             EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEEC
T ss_pred             EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccc
Confidence            77777765544444444       5567777777777643 455433 34677777777777654 44432221      


Q ss_pred             --CCCCceeeeecCcc------cc--cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecc------cCCc
Q 045938          540 --PTNLHRLEIIDNKK------IW--KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN------FPNL  603 (681)
Q Consensus       540 --~~~L~~L~l~~~~~------~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~------~~~l  603 (681)
                        +++|++|++++|.+      +.  .+++|++|++++|  .+..+|...       ..+++|+.|++++      +.-.
T Consensus       485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQP-------LNSSTLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCSSCCEEECCSCBCTTCCBCC
T ss_pred             cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC--CCCCcChhh-------hcCCCCCEEECCCCcccccCccc
Confidence              12677777777765      33  6777777777776  555566655       3567778887743      3334


Q ss_pred             ccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938          604 ERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       604 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l  650 (681)
                      ..+|..+..+++|++|++++| .++.+|.. +.++|++|++++|+..
T Consensus       556 ~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          556 REWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             CCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred             ccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCCc
Confidence            567778888888888888887 45778765 3378888888888644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=4.3e-27  Score=267.21  Aligned_cols=287  Identities=14%  Similarity=0.124  Sum_probs=179.5

Q ss_pred             ccccccccccEEeecCCCCccc--cchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCC--CCCCCCCcceEEEeCCCC
Q 045938          226 ELLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQ--SPLSLSSLREIEIYGCSS  301 (681)
Q Consensus       226 ~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~--~~~~l~~L~~L~L~~~~~  301 (681)
                      ..+..+++|+.|+++++..++.  +|....  .+......+++|++|++++|... .+|.  .++++++|+.|++++|. 
T Consensus       509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~--~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-  584 (876)
T 4ecn_A          509 DFLYDLPELQSLNIACNRGISAAQLKADWT--RLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-  584 (876)
T ss_dssp             GGGGGCSSCCEEECTTCTTSCHHHHHHHHH--HHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-
T ss_pred             HHHhCCCCCCEEECcCCCCcccccchHHHH--hhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-
Confidence            4467889999999998853553  444321  11101134468999999998885 8888  88899999999999876 


Q ss_pred             ceeecCCCCCCCceEEEEecCCCCCccccccccCCCCc-cceeeeccCCCccccccccCCCCceeEEEeccccccccccc
Q 045938          302 LVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSS-LEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSR  380 (681)
Q Consensus       302 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  380 (681)
                      +..+|....+++|++|++++|. +..+|..+  ..+++ |+.|++++|. ++.++..-.                     
T Consensus       585 l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~~~~---------------------  639 (876)
T 4ecn_A          585 VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDF--CAFTDQVEGLGFSHNK-LKYIPNIFN---------------------  639 (876)
T ss_dssp             CCBCCCCCTTSEESEEECCSSC-CSCCCTTS--CEECTTCCEEECCSSC-CCSCCSCCC---------------------
T ss_pred             cccchhhcCCCcceEEECcCCc-cccchHHH--hhccccCCEEECcCCC-CCcCchhhh---------------------
Confidence            5688877778999999999987 55777665  67777 9999998853 544442110                     


Q ss_pred             ccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHh-cccCCCccEEEeecccCcc
Q 045938          381 RYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAER-LDNNTSLETISISECENLK  459 (681)
Q Consensus       381 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~ls~~~~~~  459 (681)
                      ....++|++|+++++. +....+  .++....   ....+ +|+.|++++|.+. .+|.. +..+++|+.|++++|.+. 
T Consensus       640 ~~~~~~L~~L~Ls~N~-l~g~ip--~l~~~l~---~~~~~-~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-  710 (876)
T 4ecn_A          640 AKSVYVMGSVDFSYNK-IGSEGR--NISCSMD---DYKGI-NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-  710 (876)
T ss_dssp             TTCSSCEEEEECCSSC-TTTTSS--SCSSCTT---TCCCC-CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred             ccccCCCCEEECcCCc-CCCccc--cchhhhc---cccCC-CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence            0111236777776643 211000  0000000   01122 3788888887655 44443 346778888888887766 


Q ss_pred             cccCcCc--------CcccccEEeeccCCCceecCCCCC--CCCCcceEeeccccccccccccCcccCCcceeeecc---
Q 045938          460 ILPSGLH--------NLRQLQEIGIWECENLVSFPQGGL--PCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE---  526 (681)
Q Consensus       460 ~~~~~l~--------~l~~L~~L~l~~~~~l~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~---  526 (681)
                      .+|..+.        ++++|+.|++++|. +..+|..+.  .+++|+.|++++|.... +|..++.+++|+.|++++   
T Consensus       711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~  788 (876)
T 4ecn_A          711 SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD  788 (876)
T ss_dssp             CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC
T ss_pred             ccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC
Confidence            3444332        22377777777775 336666555  67777777777776443 677777777777777765   


Q ss_pred             ---cCCCCCccccCCCCCCCceeeeecCc
Q 045938          527 ---GGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       527 ---~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                         |...+.+|..++.+++|++|++++|.
T Consensus       789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          789 AEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             TTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             cccccccccChHHHhcCCCCCEEECCCCC
Confidence               44445555555555555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=3e-26  Score=260.29  Aligned_cols=336  Identities=15%  Similarity=0.136  Sum_probs=247.0

Q ss_pred             CCCCCCCCCCcceEEEeCCCCcee------------------ecCC-C--CCCCceEEEEecCCCCCccccccccCCCCc
Q 045938          281 LPQSPLSLSSLREIEIYGCSSLVS------------------FPEV-A--LPSKLKKIEIRECDALKSLPEAWMCDTNSS  339 (681)
Q Consensus       281 l~~~~~~l~~L~~L~L~~~~~l~~------------------~~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  339 (681)
                      +|..++++++|++|++++|. +..                  +|.. +  .+++|++|++++|.....+|..+  ..+++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~  516 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPE  516 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSS
T ss_pred             hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH--hCCCC
Confidence            67777778888888888776 444                  5532 3  47778888888877667777655  67778


Q ss_pred             cceeeeccCCCccc--cccc--------cCCCCceeEEEeccccccccccc---ccCCCCcceeeeccCCCcccccccCC
Q 045938          340 LEILEIWICNSLTY--IAGV--------QLPPSLKWTLTVEEGIQSSSSSR---RYTSSLLEGLHISRCPSLTCIFSKNE  406 (681)
Q Consensus       340 L~~L~l~~c~~l~~--~~~~--------~~~~~l~~~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~  406 (681)
                      |+.|+++++..++.  +|..        ...++++ .+.+.++... .++.   ....++|++|+++++. ++. ++   
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~-lp---  589 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRH-LE---  589 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCB-CC---
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-ccc-ch---
Confidence            88888877653443  3321        1224666 7777666544 4443   3456689999998854 333 21   


Q ss_pred             cchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCC-ccEEEeecccCcccccCcCcCcc--cccEEeeccCCCce
Q 045938          407 LPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTS-LETISISECENLKILPSGLHNLR--QLQEIGIWECENLV  483 (681)
Q Consensus       407 ~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~ls~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~  483 (681)
                              .++.++. |+.|++++|... .+|..+..+++ |++|++++|.+. .+|..+..++  +|+.|++++|...+
T Consensus       590 --------~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          590 --------AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             --------CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             --------hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence                    1556666 999999999766 77888999999 999999999887 6777776654  49999999988654


Q ss_pred             ecCC---CC--CCCCCcceEeeccccccccccccCc-ccCCcceeeecccCCCCCccccCCC--------CCCCceeeee
Q 045938          484 SFPQ---GG--LPCAKLTRLEISYCKRLQVLPKGLH-NLTSLQQLTIGEGGELPSLEEDDGL--------PTNLHRLEII  549 (681)
Q Consensus       484 ~l~~---~~--~~~~~L~~L~l~~~~~l~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~  549 (681)
                      .+|.   ..  ..+++|+.|++++|... .+|..+. .+++|+.|++++|... .+|..+..        +++|++|+++
T Consensus       659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls  736 (876)
T 4ecn_A          659 EGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLR  736 (876)
T ss_dssp             TSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECC
T ss_pred             ccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECC
Confidence            4332   12  24468999999999855 6776554 7899999999999755 56554332        2389999999


Q ss_pred             cCcc------cc--cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecc------cCCcccccccccCCCC
Q 045938          550 DNKK------IW--KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN------FPNLERLSSSIVDLQN  615 (681)
Q Consensus       550 ~~~~------~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~------~~~l~~l~~~~~~~~~  615 (681)
                      +|++      +.  .+++|+.|+|++|  .+..+|...       ..+++|+.|++++      +.-...+|..+..+++
T Consensus       737 ~N~L~~lp~~l~~~~l~~L~~L~Ls~N--~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~  807 (876)
T 4ecn_A          737 FNKLTSLSDDFRATTLPYLSNMDVSYN--CFSSFPTQP-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS  807 (876)
T ss_dssp             SSCCCCCCGGGSTTTCTTCCEEECCSS--CCSSCCCGG-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred             CCCCccchHHhhhccCCCcCEEEeCCC--CCCccchhh-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence            9987      44  7899999999998  666788766       4778999999976      3334577889999999


Q ss_pred             CCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938          616 LTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       616 L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l  650 (681)
                      |+.|++++| .+..+|.. +.++|+.|++++|+..
T Consensus       808 L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          808 LIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPNI  840 (876)
T ss_dssp             CCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTTC
T ss_pred             CCEEECCCC-CCCccCHh-hcCCCCEEECCCCCCC
Confidence            999999998 55889886 4479999999999854

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=4.2e-25  Score=248.51  Aligned_cols=505  Identities=15%  Similarity=0.106  Sum_probs=290.4

Q ss_pred             CCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeec
Q 045938           43 MCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHIL  121 (681)
Q Consensus        43 ~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  121 (681)
                      +++.+|+ +  -+++++|+++++. ++.++...+.+     +++|++|+++++ .+...... .   +..+++|++|+++
T Consensus        42 ~l~~vP~~l--p~~~~~LdLs~N~-i~~l~~~~f~~-----l~~L~~L~Ls~N-~i~~i~~~-~---f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           42 NFYKIPDNL--PFSTKNLDLSFNP-LRHLGSYSFFS-----FPELQVLDLSRC-EIQTIEDG-A---YQSLSHLSTLILT  108 (635)
T ss_dssp             CCSSCCSSS--CTTCCEEECTTSC-CCEECTTTTTT-----CTTCCEEECTTC-CCCEECTT-T---TTTCTTCCEEECT
T ss_pred             CcCccCCCC--CcCCCEEEeeCCC-CCCCCHHHHhC-----CCCCCEEECCCC-cCCCcChh-H---hcCCCCCCEEEcc
Confidence            3555653 2  1366777776665 66666554444     667777777664 22222211 1   3556777777777


Q ss_pred             cCccccccCC----CCCCCccEEEEccCCCce---eecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCCccc
Q 045938          122 RCSKLKGTFP----EHLPALEMLVIEGCEELL---VSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVF  194 (681)
Q Consensus       122 ~c~~l~~~~~----~~l~~L~~L~i~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (681)
                      ++ +++ .+|    .++++|++|++++|....   ..++.+++|++|++++|.....                       
T Consensus       109 ~N-~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-----------------------  163 (635)
T 4g8a_A          109 GN-PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------  163 (635)
T ss_dssp             TC-CCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------
T ss_pred             CC-cCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-----------------------
Confidence            64 333 222    223444444444432110   1234445555555555432111                       


Q ss_pred             ccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeC
Q 045938          195 LAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRD  274 (681)
Q Consensus       195 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~  274 (681)
                                                  .....+..+++|++|+++++ .++.++...    +..+.........++++.
T Consensus       164 ----------------------------~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~----l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          164 ----------------------------KLPEYFSNLTNLEHLDLSSN-KIQSIYCTD----LRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             ----------------------------CCCGGGGGCTTCCEEECCSS-CCCEECGGG----GHHHHTCTTCCCEEECTT
T ss_pred             ----------------------------CCchhhccchhhhhhcccCc-ccccccccc----ccchhhhhhhhhhhhccc
Confidence                                        11234466777777777776 555554433    222323334455677776


Q ss_pred             CcCcccCCCCCCCCCCcceEEEeCCCCceeec--CCCCCCCceEEEEecCC--CCCccccccc--cCCCCccceeeeccC
Q 045938          275 CQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EVALPSKLKKIEIRECD--ALKSLPEAWM--CDTNSSLEILEIWIC  348 (681)
Q Consensus       275 ~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~--~l~~~~~~~~--~~~~~~L~~L~l~~c  348 (681)
                      +.. ..++........++.+++.++.....+.  ....+..++...+....  ....+.....  ......+....+...
T Consensus       211 n~l-~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          211 NPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             CCC-CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             Ccc-cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            655 4444444455566777777654221111  11123444444443221  1111111000  012223333332221


Q ss_pred             CCcc---ccc-cccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938          349 NSLT---YIA-GVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK  424 (681)
Q Consensus       349 ~~l~---~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~  424 (681)
                      ..-.   ... .......+. .+...+.... .+........++.|++.++. +.. +.            ...++. ++
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-~~~-~~------------~~~l~~-L~  352 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVS-SFSLVSVTIE-RVKDFSYNFGWQHLELVNCK-FGQ-FP------------TLKLKS-LK  352 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCS-EEEEESCEEE-ECGGGGSCCCCSEEEEESCE-ESS-CC------------CCBCTT-CC
T ss_pred             hhcccccchhhhhhhhcccc-cccccccccc-cccccccchhhhhhhccccc-ccC-cC------------cccchh-hh
Confidence            1000   000 001112222 3333222211 11112223357777777743 111 01            122333 88


Q ss_pred             EEEEcCCCCchhHHHhcccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          425 SLDVWSCSELESIAERLDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      .+++..+.....  .....+++|+.++++.|.....  .+.....+.+|+.+++..+. ...++..+..+++|+.+++..
T Consensus       353 ~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~  429 (635)
T 4g8a_A          353 RLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQH  429 (635)
T ss_dssp             EEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTT
T ss_pred             hcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhh
Confidence            888888765432  2456789999999999887543  34445567889999998876 445666677889999999998


Q ss_pred             ccccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEeccCCCCc
Q 045938          503 CKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGCDDDMV  573 (681)
Q Consensus       503 ~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~~~~~~  573 (681)
                      +......+. .+..+++++.++++.|......+..+..+++|++|++++|..        +..+++|++|++++|  .+.
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N--~L~  507 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLE  507 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC--ccC
Confidence            876655443 567789999999999987777777788899999999999864        447889999999997  677


Q ss_pred             CCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCC---CcccccEEEeCCchh
Q 045938          574 SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKG---LPSSLLQLYIGGCPL  649 (681)
Q Consensus       574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~  649 (681)
                      .++...+      ..+++|+.|+++++ ++..++. .+..+++|++|++++| ++..++...   ++++|++|++++||.
T Consensus       508 ~l~~~~f------~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          508 QLSPTAF------NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             EECTTTT------TTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CcChHHH------cCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            7655443      56789999999996 7888865 6788999999999998 676665532   347899999998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=1.3e-25  Score=252.77  Aligned_cols=505  Identities=16%  Similarity=0.109  Sum_probs=230.9

Q ss_pred             CCcCCCcccccccccceeEEEEeecCCCCCCCC--CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeecccc
Q 045938           17 GGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPS--VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDM   94 (681)
Q Consensus        17 ~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~   94 (681)
                      +....|..+.    .++++|+|++ +.++.+|+  |+.+++|++|++++|. ++.++.+.+++     +++|++|++++.
T Consensus        42 ~l~~vP~~lp----~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~-----L~~L~~L~Ls~N  110 (635)
T 4g8a_A           42 NFYKIPDNLP----FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQS-----LSHLSTLILTGN  110 (635)
T ss_dssp             CCSSCCSSSC----TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-----CTTCCEEECTTC
T ss_pred             CcCccCCCCC----cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcC-----CCCCCEEEccCC
Confidence            4455665432    2567777776 35666663  6677777777777665 66666655544     667777777664


Q ss_pred             CCcccccccCCCccccccCCcceEeeccCccccccCC----CCCCCccEEEEccCCCc----eeecCCCCcccEEEECCC
Q 045938           95 QGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFP----EHLPALEMLVIEGCEEL----LVSVSSLPSLCKFIIGGC  166 (681)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~l~~L~~L~i~~~~~~----~~~~~~l~~L~~L~l~~~  166 (681)
                       .+.......    +..+++|++|+++++ +++ .++    ..+++|++|+++++...    ...+..+++|++|+++++
T Consensus       111 -~l~~l~~~~----f~~L~~L~~L~Ls~N-~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          111 -PIQSLALGA----FSGLSSLQKLVAVET-NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             -CCCEECGGG----GTTCTTCCEEECTTS-CCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             -cCCCCCHHH----hcCCCCCCEEECCCC-cCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence             233322111    345667777777664 333 222    34567777777765421    123455677777777776


Q ss_pred             CCceeecc-ccccCC-CCcceeecCCCcccccCCCCCCC--CCcceEeecccCCceeeeecccccccccccccEEeecCC
Q 045938          167 KKIVWESA-TGHLGS-QNSVVCRDTSNQVFLAGPLKPRI--PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSC  242 (681)
Q Consensus       167 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  242 (681)
                      ........ ...... .......+.+... +...-+..+  ..++.+.+.+....   .......+..+..++...+...
T Consensus       184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~---~~~~~~~~~~l~~l~~~~l~~~  259 (635)
T 4g8a_A          184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDS---LNVMKTCIQGLAGLEVHRLVLG  259 (635)
T ss_dssp             CCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSS---HHHHHHHHHTTTTCEEEEEEEE
T ss_pred             cccccccccccchhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhccccc---ccccchhhcCCccccccccccc
Confidence            54433211 000000 0000000000000 000000011  11222222221110   0011222233344433332211


Q ss_pred             --C---CccccchhhHHHHHHhhhhccCCccEEeeeCCcC---cccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCc
Q 045938          243 --P---KLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQD---LVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKL  314 (681)
Q Consensus       243 --~---~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~---~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L  314 (681)
                        .   .+.......    +    .....+....+..+..   ....+..+..+.+++.+++.++. +..+.......+|
T Consensus       260 ~~~~~~~l~~~~~~~----~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L  330 (635)
T 4g8a_A          260 EFRNEGNLEKFDKSA----L----EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGW  330 (635)
T ss_dssp             CCTTSCCCSCCCTTT----T----GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGGSCCCC
T ss_pred             ccccccccccccccc----c----ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccccccchhh
Confidence              0   111100000    0    0112233333322211   11223334445556666665543 4444444445566


Q ss_pred             eEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeecc
Q 045938          315 KKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISR  394 (681)
Q Consensus       315 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  394 (681)
                      +.|++.+|. +..++.    ..+..|+.+.+..+.. ...+.                        ....++|+.+++++
T Consensus       331 ~~L~l~~~~-~~~~~~----~~l~~L~~l~l~~n~~-~~~~~------------------------~~~l~~L~~L~ls~  380 (635)
T 4g8a_A          331 QHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKG-GNAFS------------------------EVDLPSLEFLDLSR  380 (635)
T ss_dssp             SEEEEESCE-ESSCCC----CBCTTCCEEEEESCCS-CCBCC------------------------CCBCTTCCEEECCS
T ss_pred             hhhhccccc-ccCcCc----ccchhhhhcccccccC-CCCcc------------------------cccccccccchhhc
Confidence            666666554 222222    2334555555544221 11111                        11123455555554


Q ss_pred             CCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-CcCcCcccccE
Q 045938          395 CPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-SGLHNLRQLQE  473 (681)
Q Consensus       395 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~  473 (681)
                      .. +.....   .+..     ....+. ++.+++..+.... .+..+..+++|+.+++..+......+ ..+..+++++.
T Consensus       381 n~-l~~~~~---~~~~-----~~~~~~-L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~  449 (635)
T 4g8a_A          381 NG-LSFKGC---CSQS-----DFGTIS-LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  449 (635)
T ss_dssp             SC-CBEEEE---CCHH-----HHSCSC-CCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred             cc-cccccc---cccc-----hhhhhh-hhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccc
Confidence            22 111000   0000     112222 6666666554322 23445566666666666655544322 33455666666


Q ss_pred             EeeccCCCceecCCCCCCCCCcceEeeccccccc-cccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938          474 IGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQ-VLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       474 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      ++++.|......+..+..+++|+.|++++|.... ..|..+..+++|++|++++|...+..|..++.+++|++|+|++|+
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~  529 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  529 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence            6666665444444445555666666666665433 244556666666666666666555555556666666666666665


Q ss_pred             c-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEeccc
Q 045938          553 K-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNF  600 (681)
Q Consensus       553 ~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~  600 (681)
                      +       +.++++|++|++++|  .+..++.+.+     ...+++|+.|+++++
T Consensus       530 l~~l~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l-----~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          530 FFSLDTFPYKCLNSLQVLDYSLN--HIMTSKKQEL-----QHFPSSLAFLNLTQN  577 (635)
T ss_dssp             CCBCCCGGGTTCTTCCEEECTTS--CCCBCCSSCT-----TCCCTTCCEEECTTC
T ss_pred             CCCCChhHHhCCCCCCEEECCCC--cCCCCCHHHH-----HhhhCcCCEEEeeCC
Confidence            4       335666777777665  4555544332     012356777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=5.9e-25  Score=242.93  Aligned_cols=451  Identities=14%  Similarity=0.071  Sum_probs=268.8

Q ss_pred             cccceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCC--CCCCCCCcceeeecCCccceeeCccccCCCCCccCC
Q 045938            7 NLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLP--SVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFP   84 (681)
Q Consensus         7 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~   84 (681)
                      ..+++++++++...+|..+    .++|++|+++++ .++.++  .++.+++|++|+++++. ++.++.+.++.     ++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-----l~  100 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDL----PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLF-----NQ  100 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTS----CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTT-----CT
T ss_pred             CCcEEEcCCCCCccCCCCC----CCCcCEEECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHHHhCC-----CC
Confidence            3478899988888888754    368999999986 577777  38999999999999886 88887665554     88


Q ss_pred             CcceeeccccCCcccccccCCCccccccCCcceEeeccCccccc-cCC---CCCCCccEEEEccCCCceeecCCCCcc--
Q 045938           85 CLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKG-TFP---EHLPALEMLVIEGCEELLVSVSSLPSL--  158 (681)
Q Consensus        85 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~---~~l~~L~~L~i~~~~~~~~~~~~l~~L--  158 (681)
                      +|++|++++.. +..+..      . .+++|++|+++++. +++ ..|   ..+++|++|+++++......+..+++|  
T Consensus       101 ~L~~L~Ls~N~-l~~lp~------~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L  171 (562)
T 3a79_B          101 DLEYLDVSHNR-LQNISC------C-PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL  171 (562)
T ss_dssp             TCCEEECTTSC-CCEECS------C-CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCE
T ss_pred             CCCEEECCCCc-CCccCc------c-ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhcee
Confidence            99999998753 333322      1 58899999998864 432 222   356889999998875433345555556  


Q ss_pred             cEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcc--eEeecccCCceeeeecccccccccccccE
Q 045938          159 CKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLE--ELEINDMKEQTYIWKSHNELLQDICSLKR  236 (681)
Q Consensus       159 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~L~~  236 (681)
                      ++|+++++....                         .+..+..++++.  .+.+ +..............+..+++|+.
T Consensus       172 ~~L~L~~n~l~~-------------------------~~~~~~~l~~l~~~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~  225 (562)
T 3a79_B          172 SCILLDLVSYHI-------------------------KGGETESLQIPNTTVLHL-VFHPNSLFSVQVNMSVNALGHLQL  225 (562)
T ss_dssp             EEEEEEESSCCC-------------------------CSSSCCEEEECCEEEEEE-EECSSSCCCCCCEEEESSEEEEEE
T ss_pred             eEEEeecccccc-------------------------cccCcccccccCcceEEE-EecCccchhhhhhhcccccceEEE
Confidence            888888876410                         001111222222  2322 111111111123334456778888


Q ss_pred             EeecCCCC-ccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc----CCCCCCCCCCcceEEEeCCCCceeecCC---
Q 045938          237 LTITSCPK-LQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK----LPQSPLSLSSLREIEIYGCSSLVSFPEV---  308 (681)
Q Consensus       237 L~l~~c~~-l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~l~~~~~~---  308 (681)
                      ++++++.. ...++     ..... ....++|+.++++++.....    ++..+ ..++|++|++++|.....+|..   
T Consensus       226 L~l~~n~~~~~~l~-----~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~  298 (562)
T 3a79_B          226 SNIKLNDENCQRLM-----TFLSE-LTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFT  298 (562)
T ss_dssp             EEEECCSTTHHHHH-----HHHHH-HHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred             ecccccccccchHH-----HHHHH-HhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhh
Confidence            88876531 11111     11111 12336677777766543221    12111 2347777777776522244432   


Q ss_pred             ---CCCCCceEEEEecCCCCCcccccccc--CCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccC
Q 045938          309 ---ALPSKLKKIEIRECDALKSLPEAWMC--DTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYT  383 (681)
Q Consensus       309 ---~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  383 (681)
                         ..++.|+.+++..+..  .+|...+.  ....+|+.|+++++. +..+..   +.                     .
T Consensus       299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~---~~---------------------~  351 (562)
T 3a79_B          299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHMVC---PP---------------------S  351 (562)
T ss_dssp             CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCCCC---CS---------------------S
T ss_pred             cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-cccccC---cc---------------------C
Confidence               2234444444444442  33322110  012457777777653 221110   01                     1


Q ss_pred             CCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccc
Q 045938          384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKIL  461 (681)
Q Consensus       384 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~  461 (681)
                      .++|++|+++++. ++...     +.     .+..++. |++|++++|...+  .++..+..+++|++|++++|.+.+.+
T Consensus       352 l~~L~~L~l~~n~-l~~~~-----~~-----~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          352 PSSFTFLNFTQNV-FTDSV-----FQ-----GCSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             CCCCCEEECCSSC-CCTTT-----TT-----TCCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred             CCCceEEECCCCc-cccch-----hh-----hhcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            2246666666642 22200     11     1445555 8888888887654  45567788888888888888887744


Q ss_pred             cC-cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCcccc-CCC
Q 045938          462 PS-GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED-DGL  539 (681)
Q Consensus       462 ~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~  539 (681)
                      |. .+..+++|++|++++|...+.++..+.  ++|++|++++|. +..+|..+..+++|++|++++|... .+|.. ++.
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~  495 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDR  495 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT
T ss_pred             ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhc
Confidence            43 467788888888888875555554333  578888888886 4577777778888888888888755 45554 667


Q ss_pred             CCCCceeeeecCcc
Q 045938          540 PTNLHRLEIIDNKK  553 (681)
Q Consensus       540 ~~~L~~L~l~~~~~  553 (681)
                      +++|++|++++|+.
T Consensus       496 l~~L~~L~l~~N~~  509 (562)
T 3a79_B          496 LTSLQYIWLHDNPW  509 (562)
T ss_dssp             CTTCCCEECCSCCB
T ss_pred             CCCCCEEEecCCCc
Confidence            77777777777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=1.4e-26  Score=247.49  Aligned_cols=410  Identities=22%  Similarity=0.209  Sum_probs=171.9

Q ss_pred             ccceeEEEEeecCCCCCCCC-CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCcc
Q 045938           30 FLKLVTLKFEYCGMCPTLPS-VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQG  108 (681)
Q Consensus        30 ~~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  108 (681)
                      ..+|++|.++++ .++.+|+ ++++++|++|+++++.....++..+ +.     +.+|+.+++.+|.             
T Consensus        10 ~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~-----l~~L~~l~l~~c~-------------   69 (454)
T 1jl5_A           10 NTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GE-----QREMAVSRLRDCL-------------   69 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTS-CC-----CHHHHHHHHHHHH-------------
T ss_pred             cccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCccc-cc-----chhcchhhhhhhh-------------
Confidence            345666666554 3466663 6666666666666654222233221 11     3333333333321             


Q ss_pred             ccccCCcceEeeccCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeec
Q 045938          109 VERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRD  188 (681)
Q Consensus       109 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  188 (681)
                         ..++++|++++|. ++ .+|...++|++|+++++.... .-..+++|++|+++++.......               
T Consensus        70 ---~~~l~~L~l~~~~-l~-~lp~~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~---------------  128 (454)
T 1jl5_A           70 ---DRQAHELELNNLG-LS-SLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSD---------------  128 (454)
T ss_dssp             ---HHTCSEEECTTSC-CS-CCCSCCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCS---------------
T ss_pred             ---ccCCCEEEecCCc-cc-cCCCCcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccC---------------
Confidence               1344555555542 33 334434555555555443221 11123566666666654322111               


Q ss_pred             CCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCcc
Q 045938          189 TSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILE  268 (681)
Q Consensus       189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~  268 (681)
                                   ..++|++|.+.++....    .+  .+..+++|++|+++++ .++.+|..            +++|+
T Consensus       129 -------------~~~~L~~L~L~~n~l~~----lp--~~~~l~~L~~L~l~~N-~l~~lp~~------------~~~L~  176 (454)
T 1jl5_A          129 -------------LPPLLEYLGVSNNQLEK----LP--ELQNSSFLKIIDVDNN-SLKKLPDL------------PPSLE  176 (454)
T ss_dssp             -------------CCTTCCEEECCSSCCSS----CC--CCTTCTTCCEEECCSS-CCSCCCCC------------CTTCC
T ss_pred             -------------CCCCCCEEECcCCCCCC----Cc--ccCCCCCCCEEECCCC-cCcccCCC------------ccccc
Confidence                         12566777776654322    22  2577888888888887 56655433            25788


Q ss_pred             EEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccC
Q 045938          269 YIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWIC  348 (681)
Q Consensus       269 ~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c  348 (681)
                      +|++++|.. ..+| .++.+++|++|++++|. ++.++..  +++|++|++++|. +..+|. +  ..+++|+.|+++++
T Consensus       177 ~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~--~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          177 FIAAGNNQL-EELP-ELQNLPFLTAIYADNNS-LKKLPDL--PLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYADNN  247 (454)
T ss_dssp             EEECCSSCC-SSCC-CCTTCTTCCEEECCSSC-CSSCCCC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSS
T ss_pred             EEECcCCcC-CcCc-cccCCCCCCEEECCCCc-CCcCCCC--cCcccEEECcCCc-CCcccc-c--CCCCCCCEEECCCC
Confidence            999988876 5566 58888899999998875 5555543  4688999998886 667774 3  67888999998874


Q ss_pred             CCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEE
Q 045938          349 NSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDV  428 (681)
Q Consensus       349 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l  428 (681)
                       .++.++.  .+++++ .+.+.++... .++..  .++|++|+++++. ++.               +..+|++|++|++
T Consensus       248 -~l~~l~~--~~~~L~-~L~l~~N~l~-~l~~~--~~~L~~L~ls~N~-l~~---------------l~~~~~~L~~L~l  304 (454)
T 1jl5_A          248 -LLKTLPD--LPPSLE-ALNVRDNYLT-DLPEL--PQSLTFLDVSENI-FSG---------------LSELPPNLYYLNA  304 (454)
T ss_dssp             -CCSSCCS--CCTTCC-EEECCSSCCS-CCCCC--CTTCCEEECCSSC-CSE---------------ESCCCTTCCEEEC
T ss_pred             -cCCcccc--cccccC-EEECCCCccc-ccCcc--cCcCCEEECcCCc-cCc---------------ccCcCCcCCEEEC
Confidence             4555442  223333 3333333211 11111  1234444444421 221               1122233444444


Q ss_pred             cCCCCchhHHHhcccC-CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccc
Q 045938          429 WSCSELESIAERLDNN-TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQ  507 (681)
Q Consensus       429 ~~~~~~~~~~~~l~~l-~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~  507 (681)
                      ++|...+     +..+ ++|++|++++|.+.+ +|..   +++|++|++++|. +..+|.   .+++|++|++++|....
T Consensus       305 ~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          305 SSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSS
T ss_pred             cCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCc
Confidence            4443322     1112 244444444444433 2221   2444444444443 223333   23344444444444322


Q ss_pred             --cccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccc--cCC-cccEEEEecc
Q 045938          508 --VLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIW--KFS-SLRQLTISGC  568 (681)
Q Consensus       508 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~l~-~L~~L~l~~~  568 (681)
                        .+|.++..+        +.|...+.+|.   .+++|++|++++|...+  .+| +++.|.+.+|
T Consensus       372 l~~ip~~l~~L--------~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~  426 (454)
T 1jl5_A          372 FPDIPESVEDL--------RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPESVEDLRMNSE  426 (454)
T ss_dssp             CCCCCTTCCEE--------ECCC-------------------------------------------
T ss_pred             CCCChHHHHhh--------hhccccccccc---ccCcCCEEECCCCcCCccccchhhHhheeCcCc
Confidence              222222211        11222222222   13789999999888643  444 5788888875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=2.8e-25  Score=239.42  Aligned_cols=342  Identities=17%  Similarity=0.192  Sum_probs=204.8

Q ss_pred             CCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCC
Q 045938          203 IPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLP  282 (681)
Q Consensus       203 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~  282 (681)
                      +++++.|.+.++.....     . .+..+++|++|++++| .++.++.      +    ..+++|++|++++|.. ..++
T Consensus        45 l~~l~~L~l~~~~i~~l-----~-~~~~l~~L~~L~Ls~n-~l~~~~~------~----~~l~~L~~L~l~~n~l-~~~~  106 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSI-----D-GVEYLNNLTQINFSNN-QLTDITP------L----KNLTKLVDILMNNNQI-ADIT  106 (466)
T ss_dssp             HHTCCEEECCSSCCCCC-----T-TGGGCTTCCEEECCSS-CCCCCGG------G----TTCTTCCEEECCSSCC-CCCG
T ss_pred             hccccEEecCCCCCccC-----c-chhhhcCCCEEECCCC-ccCCchh------h----hccccCCEEECCCCcc-ccCh
Confidence            45666666665542211     1 1455666666666665 4444432      1    2336666666666655 3333


Q ss_pred             CCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCC
Q 045938          283 QSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPS  362 (681)
Q Consensus       283 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  362 (681)
                      . +..+++|++|++++|. ++.++....+++|++|++++|. +..++..   ..+++|+.|++.+  .+..++       
T Consensus       107 ~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~l~~--~~~~~~-------  171 (466)
T 1o6v_A          107 P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDISAL---SGLTSLQQLSFGN--QVTDLK-------  171 (466)
T ss_dssp             G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCCGGG---TTCTTCSEEEEEE--SCCCCG-------
T ss_pred             h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCc-cCCChhh---ccCCcccEeecCC--cccCch-------
Confidence            3 5666666666666653 5555545556666666666665 4444432   5566666666642  121111       


Q ss_pred             ceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcc
Q 045938          363 LKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLD  442 (681)
Q Consensus       363 l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~  442 (681)
                                       ....+++|++|+++++. ++.+-.            +..++. |++|++++|...+..+  ++
T Consensus       172 -----------------~~~~l~~L~~L~l~~n~-l~~~~~------------l~~l~~-L~~L~l~~n~l~~~~~--~~  218 (466)
T 1o6v_A          172 -----------------PLANLTTLERLDISSNK-VSDISV------------LAKLTN-LESLIATNNQISDITP--LG  218 (466)
T ss_dssp             -----------------GGTTCTTCCEEECCSSC-CCCCGG------------GGGCTT-CSEEECCSSCCCCCGG--GG
T ss_pred             -----------------hhccCCCCCEEECcCCc-CCCChh------------hccCCC-CCEEEecCCccccccc--cc
Confidence                             11223457777777753 333110            344444 8888888876655433  66


Q ss_pred             cCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCccee
Q 045938          443 NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQL  522 (681)
Q Consensus       443 ~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L  522 (681)
                      .+++|++|++++|.+.+.  ..+..+++|+.|++++|... .++. +..+++|++|++++|.... ++. +..+++|+.|
T Consensus       219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L  292 (466)
T 1o6v_A          219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNL  292 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEE
T ss_pred             ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc-cchh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeE
Confidence            778888888888776652  34667788888888877643 3332 5667788888888876443 333 6677888888


Q ss_pred             eecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEe
Q 045938          523 TIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMI  597 (681)
Q Consensus       523 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l  597 (681)
                      ++++|...+ +++ ++.+++|++|++++|..     +..+++|++|++++|  .+..++. .       ..+++|+.|++
T Consensus       293 ~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n--~l~~~~~-l-------~~l~~L~~L~l  360 (466)
T 1o6v_A          293 ELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN--KVSDVSS-L-------ANLTNINWLSA  360 (466)
T ss_dssp             ECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS--CCCCCGG-G-------TTCTTCCEEEC
T ss_pred             EcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC--ccCCchh-h-------ccCCCCCEEeC
Confidence            888876544 333 66777888888887766     346777788888776  4444432 1       35667777777


Q ss_pred             cccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938          598 GNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP  631 (681)
Q Consensus       598 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~  631 (681)
                      +++ .+..++. +..+++|+.|++++| .+..+|
T Consensus       361 ~~n-~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p  391 (466)
T 1o6v_A          361 GHN-QISDLTP-LANLTRITQLGLNDQ-AWTNAP  391 (466)
T ss_dssp             CSS-CCCBCGG-GTTCTTCCEEECCCE-EEECCC
T ss_pred             CCC-ccCccch-hhcCCCCCEEeccCC-cccCCc
Confidence            775 4555544 667777777777776 344444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=2.8e-26  Score=245.05  Aligned_cols=419  Identities=21%  Similarity=0.212  Sum_probs=198.3

Q ss_pred             CCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCccccccCCcceEeeccCcccccc
Q 045938           50 VGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGT  129 (681)
Q Consensus        50 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  129 (681)
                      -...++|++|.++++. +..+|.++ +.     +++|++|+++++. +..    .....+..+.+|+.+++.+|..    
T Consensus         7 ~~~~~~L~~L~l~~n~-l~~iP~~i-~~-----L~~L~~L~l~~n~-~~~----~~p~~~~~l~~L~~l~l~~c~~----   70 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSN-LTEMPVEA-EN-----VKSKTEYYNAWSE-WER----NAPPGNGEQREMAVSRLRDCLD----   70 (454)
T ss_dssp             ----------------------------------CCHHHHHHHHHH-HHH----TSCTTSCCCHHHHHHHHHHHHH----
T ss_pred             ccccccchhhhcccCc-hhhCChhH-hc-----ccchhhhhccCCc-ccc----cCCcccccchhcchhhhhhhhc----
Confidence            3456889999998886 78787654 22     7777777777642 111    1111134555666666666542    


Q ss_pred             CCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceE
Q 045938          130 FPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEEL  209 (681)
Q Consensus       130 ~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  209 (681)
                           .++++|++++|.. ...-...++|++|+++++....                                       
T Consensus        71 -----~~l~~L~l~~~~l-~~lp~~~~~L~~L~l~~n~l~~---------------------------------------  105 (454)
T 1jl5_A           71 -----RQAHELELNNLGL-SSLPELPPHLESLVASCNSLTE---------------------------------------  105 (454)
T ss_dssp             -----HTCSEEECTTSCC-SCCCSCCTTCSEEECCSSCCSS---------------------------------------
T ss_pred             -----cCCCEEEecCCcc-ccCCCCcCCCCEEEccCCcCCc---------------------------------------
Confidence                 2355566655531 1100112345555554443211                                       


Q ss_pred             eecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCC
Q 045938          210 EINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLS  289 (681)
Q Consensus       210 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~  289 (681)
                                   .+    ..+++|+.|+++++ .++.++.            .+++|++|++++|.. ..+| .++.++
T Consensus       106 -------------lp----~~~~~L~~L~l~~n-~l~~l~~------------~~~~L~~L~L~~n~l-~~lp-~~~~l~  153 (454)
T 1jl5_A          106 -------------LP----ELPQSLKSLLVDNN-NLKALSD------------LPPLLEYLGVSNNQL-EKLP-ELQNSS  153 (454)
T ss_dssp             -------------CC----CCCTTCCEEECCSS-CCSCCCS------------CCTTCCEEECCSSCC-SSCC-CCTTCT
T ss_pred             -------------cc----cccCCCcEEECCCC-ccCcccC------------CCCCCCEEECcCCCC-CCCc-ccCCCC
Confidence                         11    12367777777765 4554432            126788888888876 4577 588899


Q ss_pred             CcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEe
Q 045938          290 SLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTV  369 (681)
Q Consensus       290 ~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~  369 (681)
                      +|++|++++|. ++.+|..  .++|++|++++|. +..+|. +  ..+++|+.|++++| .++.++..  +         
T Consensus       154 ~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~-l~~l~~-~--~~l~~L~~L~l~~N-~l~~l~~~--~---------  214 (454)
T 1jl5_A          154 FLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQ-LEELPE-L--QNLPFLTAIYADNN-SLKKLPDL--P---------  214 (454)
T ss_dssp             TCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECCSS-CCSSCCCC--C---------
T ss_pred             CCCEEECCCCc-CcccCCC--cccccEEECcCCc-CCcCcc-c--cCCCCCCEEECCCC-cCCcCCCC--c---------
Confidence            99999999875 6666543  4689999999886 666764 3  78888999988875 34333211  0         


Q ss_pred             cccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccE
Q 045938          370 EEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLET  449 (681)
Q Consensus       370 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  449 (681)
                                     ++|++|+++++ .++. ++     .      ++.++. |++|++++|...+ +|.   .+++|++
T Consensus       215 ---------------~~L~~L~l~~n-~l~~-lp-----~------~~~l~~-L~~L~l~~N~l~~-l~~---~~~~L~~  261 (454)
T 1jl5_A          215 ---------------LSLESIVAGNN-ILEE-LP-----E------LQNLPF-LTTIYADNNLLKT-LPD---LPPSLEA  261 (454)
T ss_dssp             ---------------TTCCEEECCSS-CCSS-CC-----C------CTTCTT-CCEEECCSSCCSS-CCS---CCTTCCE
T ss_pred             ---------------CcccEEECcCC-cCCc-cc-----c------cCCCCC-CCEEECCCCcCCc-ccc---cccccCE
Confidence                           14677777664 2332 11     0      344444 7778877775543 332   2467777


Q ss_pred             EEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCC
Q 045938          450 ISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGE  529 (681)
Q Consensus       450 L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~  529 (681)
                      |++++|.+.+ +|..   .++|+.|++++|. +..++..   .++|+.|++++|... .++.   ..++|++|++++|..
T Consensus       262 L~l~~N~l~~-l~~~---~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N~l~-~i~~---~~~~L~~L~Ls~N~l  329 (454)
T 1jl5_A          262 LNVRDNYLTD-LPEL---PQSLTFLDVSENI-FSGLSEL---PPNLYYLNASSNEIR-SLCD---LPPSLEELNVSNNKL  329 (454)
T ss_dssp             EECCSSCCSC-CCCC---CTTCCEEECCSSC-CSEESCC---CTTCCEEECCSSCCS-EECC---CCTTCCEEECCSSCC
T ss_pred             EECCCCcccc-cCcc---cCcCCEEECcCCc-cCcccCc---CCcCCEEECcCCcCC-cccC---CcCcCCEEECCCCcc
Confidence            7777777654 3432   3677777777776 3344431   246777777777643 2322   124777777777764


Q ss_pred             CCCccccCCCCCCCceeeeecCcccc---cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc
Q 045938          530 LPSLEEDDGLPTNLHRLEIIDNKKIW---KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL  606 (681)
Q Consensus       530 ~~~~~~~~~~~~~L~~L~l~~~~~~~---~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l  606 (681)
                      .+ +|.   .+++|++|++++|....   .+++|++|++++|  .+..+|.          .+..+..++..  .....+
T Consensus       330 ~~-lp~---~~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N--~l~~l~~----------ip~~l~~L~~n--~~~~~i  391 (454)
T 1jl5_A          330 IE-LPA---LPPRLERLIASFNHLAEVPELPQNLKQLHVEYN--PLREFPD----------IPESVEDLRMN--SHLAEV  391 (454)
T ss_dssp             SC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCC----------CCTTCCEEECC--C-----
T ss_pred             cc-ccc---cCCcCCEEECCCCccccccchhhhccEEECCCC--CCCcCCC----------ChHHHHhhhhc--cccccc
Confidence            43 443   24677777777776411   3556777777765  3443332          22233333321  122233


Q ss_pred             cccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchh
Q 045938          607 SSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL  649 (681)
Q Consensus       607 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~  649 (681)
                      |.   .+++|+.|++++| .++.+|.  ++++++.|.+.+|..
T Consensus       392 ~~---~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~~  428 (454)
T 1jl5_A          392 PE---LPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSERV  428 (454)
T ss_dssp             -------------------------------------------
T ss_pred             cc---ccCcCCEEECCCC-cCCcccc--chhhHhheeCcCccc
Confidence            32   2489999999998 4555544  567888888888753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=2.1e-25  Score=240.24  Aligned_cols=139  Identities=15%  Similarity=0.087  Sum_probs=110.2

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      +|++|++++|...+..+..+..+++|++|++++|.+.+..+..++++++|++|++++|...+..+..+..+++|++|+++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            48999999988877777788889999999999998888878888889999999999887544445566778899999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSL  560 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L  560 (681)
                      +|......|..+..+++|++|++++|...+..+..++.+++|++|++++|+....++.+
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            98876666778888999999999998766544445677778888888877764444433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=8.5e-25  Score=241.66  Aligned_cols=401  Identities=15%  Similarity=0.110  Sum_probs=228.2

Q ss_pred             CCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCC
Q 045938          204 PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQ  283 (681)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~  283 (681)
                      ++|++|++.++....    .+...+..+++|++|+++++ .++.+++..+        ...++|++|++++|.. ..+|.
T Consensus        52 ~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--------~~l~~L~~L~Ls~N~l-~~lp~  117 (562)
T 3a79_B           52 PRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHN-RIRSLDFHVF--------LFNQDLEYLDVSHNRL-QNISC  117 (562)
T ss_dssp             TTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSC-CCCEECTTTT--------TTCTTCCEEECTTSCC-CEECS
T ss_pred             CCcCEEECCCCCccc----cChhhhccCCCccEEECCCC-CCCcCCHHHh--------CCCCCCCEEECCCCcC-CccCc
Confidence            456666665554222    22334455666666666655 4444433211        1225566666666554 34554


Q ss_pred             CCCCCCCcceEEEeCCCCceeec---CCCCCCCceEEEEecCCCCCccccccccCCCCcc--ceeeeccCCCc-cccccc
Q 045938          284 SPLSLSSLREIEIYGCSSLVSFP---EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSL--EILEIWICNSL-TYIAGV  357 (681)
Q Consensus       284 ~~~~l~~L~~L~L~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L--~~L~l~~c~~l-~~~~~~  357 (681)
                      .  .+++|++|++++|. +..++   ..+.+++|++|++++|. +.....    ..+++|  +.|+++++.-. ......
T Consensus       118 ~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~  189 (562)
T 3a79_B          118 C--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDL----LPVAHLHLSCILLDLVSYHIKGGETE  189 (562)
T ss_dssp             C--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCC
T ss_pred             c--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-cccCch----hhhhhceeeEEEeecccccccccCcc
Confidence            4  55666666666554 43332   23345566666666654 222111    222333  66666554220 111100


Q ss_pred             cCCC-Cce-eEEEeccccccccccc--ccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCC
Q 045938          358 QLPP-SLK-WTLTVEEGIQSSSSSR--RYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSE  433 (681)
Q Consensus       358 ~~~~-~l~-~~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~  433 (681)
                      .+.. ..+ ..+.+.++.....+..  ....++|+.+++++......     .+++.+..  +...+. ++.+++.++..
T Consensus       190 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-----~l~~~~~~--l~~l~~-L~~L~L~~~~l  261 (562)
T 3a79_B          190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-----RLMTFLSE--LTRGPT-LLNVTLQHIET  261 (562)
T ss_dssp             EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-----HHHHHHHH--HHSCSS-CEEEEEEEEEE
T ss_pred             cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-----hHHHHHHH--HhccCc-ceEEEecCCcC
Confidence            0000 000 0112222221111111  11234566666665320000     01111111  233333 55565555543


Q ss_pred             chhHH---HhcccCCCccEEEeecccCcccccCcC-----cCc--------------------------ccccEEeeccC
Q 045938          434 LESIA---ERLDNNTSLETISISECENLKILPSGL-----HNL--------------------------RQLQEIGIWEC  479 (681)
Q Consensus       434 ~~~~~---~~l~~l~~L~~L~ls~~~~~~~~~~~l-----~~l--------------------------~~L~~L~l~~~  479 (681)
                      .....   ......++|++|++++|.+.+.+|..+     .++                          .+|+.|++++|
T Consensus       262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n  341 (562)
T 3a79_B          262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT  341 (562)
T ss_dssp             CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence            32211   011223477777777777665555544     223                          34666666665


Q ss_pred             CCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCC--CccccCCCCCCCceeeeecCcc----
Q 045938          480 ENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELP--SLEEDDGLPTNLHRLEIIDNKK----  553 (681)
Q Consensus       480 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~----  553 (681)
                      ... .++ ....+++|++|++++|......|..++.+++|++|++++|...+  .+|..++.+++|++|++++|..    
T Consensus       342 ~~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          342 PFI-HMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             CCC-CCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred             Ccc-ccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence            532 111 11567899999999999877788889999999999999997654  3455688999999999999986    


Q ss_pred             ----cccCCcccEEEEeccCCCCc-CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCc
Q 045938          554 ----IWKFSSLRQLTISGCDDDMV-SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLK  628 (681)
Q Consensus       554 ----~~~l~~L~~L~l~~~~~~~~-~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  628 (681)
                          +..+++|++|++++|.  +. .++.         ..+++|+.|+++++ +++.+|..+..+++|++|++++| .++
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~--l~~~~~~---------~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~  486 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNM--LTGSVFR---------CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLK  486 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSC--CCGGGGS---------SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCC
T ss_pred             ChhhhcCcccCCEEECCCCC--CCcchhh---------hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCC
Confidence                2367899999999973  32 2222         13378999999997 89999998889999999999998 788


Q ss_pred             ccCCC--CCcccccEEEeCCchh
Q 045938          629 YFPEK--GLPSSLLQLYIGGCPL  649 (681)
Q Consensus       629 ~l~~~--~~~~~L~~L~i~~c~~  649 (681)
                      .+|..  ..+++|++|++++||.
T Consensus       487 ~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          487 SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CCCHHHHhcCCCCCEEEecCCCc
Confidence            88874  4578999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=1.3e-24  Score=234.24  Aligned_cols=341  Identities=19%  Similarity=0.218  Sum_probs=262.7

Q ss_pred             cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCC
Q 045938          229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEV  308 (681)
Q Consensus       229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~  308 (681)
                      ..+++++.|++.++ .++.++..          ..+++|++|++++|.. ..++. +.++++|++|++++|. +..++..
T Consensus        43 ~~l~~l~~L~l~~~-~i~~l~~~----------~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~  108 (466)
T 1o6v_A           43 TDLDQVTTLQADRL-GIKSIDGV----------EYLNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQ-IADITPL  108 (466)
T ss_dssp             HHHHTCCEEECCSS-CCCCCTTG----------GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred             hHhccccEEecCCC-CCccCcch----------hhhcCCCEEECCCCcc-CCchh-hhccccCCEEECCCCc-cccChhh
Confidence            45789999999987 56665431          3458999999999876 55655 8899999999999876 6666667


Q ss_pred             CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938          309 ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE  388 (681)
Q Consensus       309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~  388 (681)
                      ..+++|++|++++|. +..++. +  ..+++|++|++++| .+..++..                        ..+++|+
T Consensus       109 ~~l~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n-~l~~~~~~------------------------~~l~~L~  159 (466)
T 1o6v_A          109 ANLTNLTGLTLFNNQ-ITDIDP-L--KNLTNLNRLELSSN-TISDISAL------------------------SGLTSLQ  159 (466)
T ss_dssp             TTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEEEEEE-EECCCGGG------------------------TTCTTCS
T ss_pred             cCCCCCCEEECCCCC-CCCChH-H--cCCCCCCEEECCCC-ccCCChhh------------------------ccCCccc
Confidence            789999999999986 666665 2  78999999999986 34333221                        1233588


Q ss_pred             eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCc
Q 045938          389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNL  468 (681)
Q Consensus       389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l  468 (681)
                      +|++++  .+..+.+            +..++. |++|++++|.... + ..+..+++|++|++++|.+.+..+  ++.+
T Consensus       160 ~L~l~~--~~~~~~~------------~~~l~~-L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l  220 (466)
T 1o6v_A          160 QLSFGN--QVTDLKP------------LANLTT-LERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGIL  220 (466)
T ss_dssp             EEEEEE--SCCCCGG------------GTTCTT-CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred             EeecCC--cccCchh------------hccCCC-CCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--cccc
Confidence            888864  2222111            555666 9999999997544 3 358899999999999998877554  6778


Q ss_pred             ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeee
Q 045938          469 RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEI  548 (681)
Q Consensus       469 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  548 (681)
                      ++|+.|++++|. +..++ .+..+++|+.|++++|......+  +..+++|++|++++|...+ +++ ++.+++|++|++
T Consensus       221 ~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L  294 (466)
T 1o6v_A          221 TNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLEL  294 (466)
T ss_dssp             TTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEEC
T ss_pred             CCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEc
Confidence            999999999987 44444 35678899999999998654333  7889999999999997654 444 888999999999


Q ss_pred             ecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecC
Q 045938          549 IDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELED  623 (681)
Q Consensus       549 ~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~  623 (681)
                      ++|..     +..+++|+.|++++|  .+..++..        ..+++|+.|+++++ .+..++ .+..+++|+.|++++
T Consensus       295 ~~n~l~~~~~~~~l~~L~~L~L~~n--~l~~~~~~--------~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~  362 (466)
T 1o6v_A          295 NENQLEDISPISNLKNLTYLTLYFN--NISDISPV--------SSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGH  362 (466)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSS--CCSCCGGG--------GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCS
T ss_pred             CCCcccCchhhcCCCCCCEEECcCC--cCCCchhh--------ccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCC
Confidence            99987     558899999999998  55555442        47789999999997 677774 688899999999999


Q ss_pred             CCCCcccCCCCCcccccEEEeCCchhH
Q 045938          624 CPKLKYFPEKGLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       624 c~~l~~l~~~~~~~~L~~L~i~~c~~l  650 (681)
                      |. +..+++...+++|++|++++|+..
T Consensus       363 n~-l~~~~~~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          363 NQ-ISDLTPLANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             SC-CCBCGGGTTCTTCCEEECCCEEEE
T ss_pred             Cc-cCccchhhcCCCCCEEeccCCccc
Confidence            84 555554666899999999998644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=4.4e-25  Score=237.66  Aligned_cols=340  Identities=17%  Similarity=0.128  Sum_probs=228.1

Q ss_pred             CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCCCceEEEEecCCCCCccccccccCCCCccce
Q 045938          265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEI  342 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~  342 (681)
                      ++|++|++++|......|..++++++|++|++++|.....++.  ...+++|++|++++|......|..+  ..+++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF--NGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT--TTCTTCCE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc--cCcccCCE
Confidence            5677777777666444466677777777777777654334432  3446777777777766333334443  56677777


Q ss_pred             eeeccCCCccc-cccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938          343 LEIWICNSLTY-IAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP  421 (681)
Q Consensus       343 L~l~~c~~l~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~  421 (681)
                      |++++|. +++ .+.......                     .++|++|+++++. ++.+.+     ..    .+..++.
T Consensus       108 L~L~~n~-l~~~~~~~~~~~~---------------------l~~L~~L~L~~n~-l~~~~~-----~~----~~~~l~~  155 (455)
T 3v47_A          108 LTLTQCN-LDGAVLSGNFFKP---------------------LTSLEMLVLRDNN-IKKIQP-----AS----FFLNMRR  155 (455)
T ss_dssp             EECTTSC-CBTHHHHSSTTTT---------------------CTTCCEEECCSSB-CCSCCC-----CG----GGGGCTT
T ss_pred             EeCCCCC-CCccccCcccccC---------------------cccCCEEECCCCc-cCccCc-----cc----ccCCCCc
Confidence            7777653 322 111111111                     2246777766643 222111     00    0334444


Q ss_pred             CCcEEEEcCCCCchhHHHhcccC--CCccEEEeecccCcccccCc--------CcCcccccEEeeccCCCceecCCCCC-
Q 045938          422 SLKSLDVWSCSELESIAERLDNN--TSLETISISECENLKILPSG--------LHNLRQLQEIGIWECENLVSFPQGGL-  490 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~ls~~~~~~~~~~~--------l~~l~~L~~L~l~~~~~l~~l~~~~~-  490 (681)
                       |++|++++|...+..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|......+..+. 
T Consensus       156 -L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          156 -FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             -CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             -ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence             9999999998777666666665  78999999999887644333        23568899999999876544443221 


Q ss_pred             --CCCCcceEeecccccccccc----------ccCc--ccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc---
Q 045938          491 --PCAKLTRLEISYCKRLQVLP----------KGLH--NLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK---  553 (681)
Q Consensus       491 --~~~~L~~L~l~~~~~l~~~~----------~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---  553 (681)
                        ..++|+.|++++|.......          ..+.  ..++|+.|++++|...+..+..++.+++|++|++++|..   
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence              23688899988875433211          1111  236899999999988877787889999999999999986   


Q ss_pred             ----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc-cccccCCCCCCEEeecCCCCCc
Q 045938          554 ----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL-SSSIVDLQNLTHLELEDCPKLK  628 (681)
Q Consensus       554 ----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~  628 (681)
                          +.++++|++|++++|  .+..++...+      ..+++|++|+++++ .+..+ |..+..+++|++|++++| .++
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~  384 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQN--FLGSIDSRMF------ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLK  384 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSS--CCCEECGGGG------TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred             ChhHhcCcccCCEEECCCC--ccCCcChhHh------cCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccc
Confidence                457899999999997  5566654432      46789999999997 66666 568889999999999997 677


Q ss_pred             ccCCC--CCcccccEEEeCCchh
Q 045938          629 YFPEK--GLPSSLLQLYIGGCPL  649 (681)
Q Consensus       629 ~l~~~--~~~~~L~~L~i~~c~~  649 (681)
                      .+|..  ..+++|++|++++|+.
T Consensus       385 ~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          385 SVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCHhHhccCCcccEEEccCCCc
Confidence            88774  3578999999998864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.7e-24  Score=224.19  Aligned_cols=192  Identities=21%  Similarity=0.158  Sum_probs=115.5

Q ss_pred             CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938          418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR  497 (681)
Q Consensus       418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  497 (681)
                      .++. |++|++++|......+  +..+++|++|++++|.+.+..+  +..+++|+.+++++|... .++. +..+++|++
T Consensus       153 ~l~~-L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~  225 (347)
T 4fmz_A          153 NMTG-LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-VANMTRLNS  225 (347)
T ss_dssp             TCTT-CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCE
T ss_pred             hCCC-CcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-hhcCCcCCE
Confidence            3444 7777777775444322  6677777777777776654322  556677777777766533 3322 455667777


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPP  577 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~  577 (681)
                      |++++|... .++. +..+++|++|++++|.... ++ .+..++                 +|++|++++|  .+..++.
T Consensus       226 L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~-----------------~L~~L~l~~n--~l~~~~~  282 (347)
T 4fmz_A          226 LKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISD-IN-AVKDLT-----------------KLKMLNVGSN--QISDISV  282 (347)
T ss_dssp             EECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCT-----------------TCCEEECCSS--CCCCCGG
T ss_pred             EEccCCccC-CCcc-hhcCCCCCEEECCCCccCC-Ch-hHhcCC-----------------CcCEEEccCC--ccCCChh
Confidence            777776643 3333 5666677777776665333 22 244444                 4555555554  3333322


Q ss_pred             cccccccCCCcccccceeEecccCCcc-cccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchh
Q 045938          578 EDIRLRTTLPLPACLASLMIGNFPNLE-RLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL  649 (681)
Q Consensus       578 ~~~~~~~~~~~~~~L~~l~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~  649 (681)
                       .       ..+++|+.|+++++ .+. ..+..+..+++|++|++++|+ +..++....+++|++|++++|+.
T Consensus       283 -~-------~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          283 -L-------NNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQVI  345 (347)
T ss_dssp             -G-------GGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC--
T ss_pred             -h-------cCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhcc
Confidence             1       35566777777776 344 334567788899999999984 66665555678899999998863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=3.6e-24  Score=221.76  Aligned_cols=297  Identities=17%  Similarity=0.208  Sum_probs=206.3

Q ss_pred             cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCC
Q 045938          229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEV  308 (681)
Q Consensus       229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~  308 (681)
                      ..+++|+.|+++++ .++.++.-          ..+++|++|++++|.. ..++. +..+++|++|++++|. ++.++..
T Consensus        41 ~~l~~L~~L~l~~~-~i~~~~~~----------~~~~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~  106 (347)
T 4fmz_A           41 EELESITKLVVAGE-KVASIQGI----------EYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTNK-ITDISAL  106 (347)
T ss_dssp             HHHTTCSEEECCSS-CCCCCTTG----------GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred             hhcccccEEEEeCC-ccccchhh----------hhcCCccEEEccCCcc-ccchh-hhcCCcCCEEEccCCc-ccCchHH
Confidence            46777888888776 45554321          2347788888888755 45554 7778888888888764 6666666


Q ss_pred             CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938          309 ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE  388 (681)
Q Consensus       309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~  388 (681)
                      ..+++|++|++++|. +..++. +  ..+++|+.|++++|..+..++..                        ...++|+
T Consensus       107 ~~l~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~l~~n~~~~~~~~~------------------------~~l~~L~  158 (347)
T 4fmz_A          107 QNLTNLRELYLNEDN-ISDISP-L--ANLTKMYSLNLGANHNLSDLSPL------------------------SNMTGLN  158 (347)
T ss_dssp             TTCTTCSEEECTTSC-CCCCGG-G--TTCTTCCEEECTTCTTCCCCGGG------------------------TTCTTCC
T ss_pred             cCCCcCCEEECcCCc-ccCchh-h--ccCCceeEEECCCCCCcccccch------------------------hhCCCCc
Confidence            677888888888776 555555 2  67788888888877655544321                        1223577


Q ss_pred             eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCc
Q 045938          389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNL  468 (681)
Q Consensus       389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l  468 (681)
                      +|+++++. +..+.+            +..++. |++|++++|...+. +. +..+++|+++++++|.+.+..+  +..+
T Consensus       159 ~L~l~~~~-~~~~~~------------~~~l~~-L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~  220 (347)
T 4fmz_A          159 YLTVTESK-VKDVTP------------IANLTD-LYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANM  220 (347)
T ss_dssp             EEECCSSC-CCCCGG------------GGGCTT-CSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred             EEEecCCC-cCCchh------------hccCCC-CCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcC
Confidence            88877753 222111            344555 99999999976543 32 8899999999999998876544  7789


Q ss_pred             ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeee
Q 045938          469 RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEI  548 (681)
Q Consensus       469 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  548 (681)
                      ++|++|++++|.. ..++. +..+++|++|++++|... .+ ..+..+++|++|++++|...+ ++. +..+++|++|++
T Consensus       221 ~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L  294 (347)
T 4fmz_A          221 TRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTNQIS-DI-NAVKDLTKLKMLNVGSNQISD-ISV-LNNLSQLNSLFL  294 (347)
T ss_dssp             TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCC-CC-GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEEC
T ss_pred             CcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCCccC-CC-hhHhcCCCcCEEEccCCccCC-Chh-hcCCCCCCEEEC
Confidence            9999999999874 44554 778899999999999754 44 457889999999999997544 333 666677777777


Q ss_pred             ecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEee
Q 045938          549 IDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLEL  621 (681)
Q Consensus       549 ~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l  621 (681)
                      ++|..       +.++++|++|++++|                                 .+..++. +..+++|++|++
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n---------------------------------~l~~~~~-~~~l~~L~~L~l  340 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQN---------------------------------HITDIRP-LASLSKMDSADF  340 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSS---------------------------------SCCCCGG-GGGCTTCSEESS
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCC---------------------------------ccccccC-hhhhhccceeeh
Confidence            76654       224555555555554                                 3444544 677889999999


Q ss_pred             cCCC
Q 045938          622 EDCP  625 (681)
Q Consensus       622 ~~c~  625 (681)
                      ++|+
T Consensus       341 ~~N~  344 (347)
T 4fmz_A          341 ANQV  344 (347)
T ss_dssp             SCC-
T ss_pred             hhhc
Confidence            8884

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.4e-23  Score=227.22  Aligned_cols=291  Identities=17%  Similarity=0.175  Sum_probs=205.3

Q ss_pred             cCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec--CCCCCCCceEEEEecCCCCCccccccccCCCCccc
Q 045938          264 SCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLE  341 (681)
Q Consensus       264 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  341 (681)
                      ++++++|++++|......+..+.++++|++|++++|. +..+.  ....+++|++|++++|. +..++...+ ..+++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~  107 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLT  107 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCC
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCC
Confidence            3567777777766644445566677777777777664 55442  23446677777777765 555554432 5567777


Q ss_pred             eeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938          342 ILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP  421 (681)
Q Consensus       342 ~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~  421 (681)
                      .|+++++ .+..+....+                      ..+++|++|+++++ .++.+.+ .         .+..++.
T Consensus       108 ~L~Ls~n-~i~~~~~~~~----------------------~~l~~L~~L~l~~n-~l~~~~~-~---------~~~~l~~  153 (477)
T 2id5_A          108 KLDISEN-KIVILLDYMF----------------------QDLYNLKSLEVGDN-DLVYISH-R---------AFSGLNS  153 (477)
T ss_dssp             EEECTTS-CCCEECTTTT----------------------TTCTTCCEEEECCT-TCCEECT-T---------SSTTCTT
T ss_pred             EEECCCC-ccccCChhHc----------------------cccccCCEEECCCC-ccceeCh-h---------hccCCCC
Confidence            7777664 3333221111                      11234666666663 2322110 0         1445555


Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                       |++|++++|......+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.....++.......+|++|+++
T Consensus       154 -L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  232 (477)
T 2id5_A          154 -LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT  232 (477)
T ss_dssp             -CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred             -CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence             9999999997766666678999999999999999988777788999999999999999888888877777799999999


Q ss_pred             ccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCc
Q 045938          502 YCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMV  573 (681)
Q Consensus       502 ~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~  573 (681)
                      +|... .+| ..+..+++|+.|++++|...+..+..+..+++|++|++++|..       +.++++|+.|++++|  .+.
T Consensus       233 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~  309 (477)
T 2id5_A          233 HCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN--QLT  309 (477)
T ss_dssp             SSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS--CCS
T ss_pred             CCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC--cCc
Confidence            99854 455 4678899999999999987665566688899999999999876       447888999999987  677


Q ss_pred             CCCccccccccCCCcccccceeEecccC
Q 045938          574 SFPPEDIRLRTTLPLPACLASLMIGNFP  601 (681)
Q Consensus       574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~  601 (681)
                      .++...+      ..+++|+.|++++++
T Consensus       310 ~~~~~~~------~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          310 TLEESVF------HSVGNLETLILDSNP  331 (477)
T ss_dssp             CCCGGGB------SCGGGCCEEECCSSC
T ss_pred             eeCHhHc------CCCcccCEEEccCCC
Confidence            7776543      456778888888753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=2.1e-23  Score=225.90  Aligned_cols=306  Identities=18%  Similarity=0.150  Sum_probs=164.2

Q ss_pred             cEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec--CCCCCCCceEEEEecCCCCCcc-ccccccCCCCccceee
Q 045938          268 EYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EVALPSKLKKIEIRECDALKSL-PEAWMCDTNSSLEILE  344 (681)
Q Consensus       268 ~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~  344 (681)
                      +.++.++.. +..+|..+.  ++++.|++++|. ++.++  ....+++|++|++++|. +..+ |..+  ..+++|+.|+
T Consensus        14 ~~v~c~~~~-l~~ip~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~--~~l~~L~~L~   86 (477)
T 2id5_A           14 RAVLCHRKR-FVAVPEGIP--TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENI-VSAVEPGAF--NNLFNLRTLG   86 (477)
T ss_dssp             TEEECCSCC-CSSCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEE
T ss_pred             CEEEeCCCC-cCcCCCCCC--CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCc-cCEeChhhh--hCCccCCEEE
Confidence            344444433 366776553  689999999876 77664  35568899999999986 5554 4444  7788999999


Q ss_pred             eccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938          345 IWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK  424 (681)
Q Consensus       345 l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~  424 (681)
                      ++++ .++.++...+.                      .+++|++|+++++. ++.+.+     .     .+..++. |+
T Consensus        87 L~~n-~l~~~~~~~~~----------------------~l~~L~~L~Ls~n~-i~~~~~-----~-----~~~~l~~-L~  131 (477)
T 2id5_A           87 LRSN-RLKLIPLGVFT----------------------GLSNLTKLDISENK-IVILLD-----Y-----MFQDLYN-LK  131 (477)
T ss_dssp             CCSS-CCCSCCTTSST----------------------TCTTCCEEECTTSC-CCEECT-----T-----TTTTCTT-CC
T ss_pred             CCCC-cCCccCccccc----------------------CCCCCCEEECCCCc-cccCCh-----h-----Hcccccc-CC
Confidence            9874 45444322110                      11246666665532 222100     0     0333333 66


Q ss_pred             EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938          425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK  504 (681)
Q Consensus       425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~  504 (681)
                      +|++++|......+..+..+++|++|++++|.+....+..+.++++|+.|++++|......+..+..+++|++|++++|.
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            66666665544444455666666666666665554444445556666666666655433333344555666666666665


Q ss_pred             ccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCc
Q 045938          505 RLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPP  577 (681)
Q Consensus       505 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~  577 (681)
                      ....++.......+|++|++++|......+..++.+++|++|++++|.+       +.++++|++|++++|  .+..++.
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~  289 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG--QLAVVEP  289 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS--CCSEECT
T ss_pred             cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC--ccceECH
Confidence            5555555554445666666666654332223355555566666655543       234455555555554  2333222


Q ss_pred             cccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCC
Q 045938          578 EDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDC  624 (681)
Q Consensus       578 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c  624 (681)
                      ..+      ..+++|+.|+++++ .+..++. .+..+++|+.|++++|
T Consensus       290 ~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          290 YAF------RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             TTB------TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             HHh------cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence            111      23344444444443 3444433 2334444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=2e-23  Score=223.19  Aligned_cols=151  Identities=15%  Similarity=0.127  Sum_probs=78.6

Q ss_pred             CCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCc-
Q 045938          417 GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKL-  495 (681)
Q Consensus       417 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L-  495 (681)
                      ..++. |++|++++|...+.   .++.+++|++|++++|.+.+ +|  ++.+++|+.|++++|... .++  ...+++| 
T Consensus       188 ~~l~~-L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~--~~~l~~L~  257 (457)
T 3bz5_A          188 SQNKL-LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLT  257 (457)
T ss_dssp             TTCTT-CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC--CTTCTTCC
T ss_pred             ccCCC-CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcC--HHHCCCCC
Confidence            33444 77777776655442   36666777777777776665 33  556667777777766532 333  1223333 


Q ss_pred             ---------ceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEe
Q 045938          496 ---------TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTIS  566 (681)
Q Consensus       496 ---------~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~  566 (681)
                               +.+++++|.....+|  .+.+++|+.|++++|...+.+|.   ..++|+.|+++      ++++|++|+++
T Consensus       258 ~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~------~~~~L~~L~L~  326 (457)
T 3bz5_A          258 TLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS------QNPKLVYLYLN  326 (457)
T ss_dssp             EEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT------TCTTCCEEECT
T ss_pred             EEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh------hcccCCEEECC
Confidence                     344444444444443  34456666666666655555442   23344444443      23556666666


Q ss_pred             ccCCCCcCCCccccccccCCCcccccceeEecc
Q 045938          567 GCDDDMVSFPPEDIRLRTTLPLPACLASLMIGN  599 (681)
Q Consensus       567 ~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~  599 (681)
                      +|  .+..++  .       ..+++|+.|++++
T Consensus       327 ~N--~l~~l~--l-------~~l~~L~~L~l~~  348 (457)
T 3bz5_A          327 NT--ELTELD--V-------SHNTKLKSLSCVN  348 (457)
T ss_dssp             TC--CCSCCC--C-------TTCTTCSEEECCS
T ss_pred             CC--cccccc--c-------ccCCcCcEEECCC
Confidence            55  333332  1       3445555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=6.3e-23  Score=215.89  Aligned_cols=307  Identities=15%  Similarity=0.065  Sum_probs=181.8

Q ss_pred             ccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--
Q 045938          230 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--  307 (681)
Q Consensus       230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--  307 (681)
                      .+++++.|+++++ .++.+|...+        ..+++|++|++++|......+..+..+++|++|++++|. ++.++.  
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~~--------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~  112 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAALL--------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV  112 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHHH--------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             ccCCceEEEecCC-chhhCChhHh--------cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence            4567777777775 5666665421        223777777777776643344467777788888887765 555432  


Q ss_pred             CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCc
Q 045938          308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL  387 (681)
Q Consensus       308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L  387 (681)
                      ...+++|++|++++|. +..+|...+ ..+++|++|+++++ .++.++...                             
T Consensus       113 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-----------------------------  160 (390)
T 3o6n_A          113 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNN-NLERIEDDT-----------------------------  160 (390)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT-----------------------------
T ss_pred             hcCCCCCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCCC-ccCccChhh-----------------------------
Confidence            3456777777777765 555555432 45667777777664 222221100                             


Q ss_pred             ceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcC
Q 045938          388 EGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHN  467 (681)
Q Consensus       388 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~  467 (681)
                                                  +..++. |++|++++|.....   .+..+++|++|++++|.+...     ..
T Consensus       161 ----------------------------~~~l~~-L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~  203 (390)
T 3o6n_A          161 ----------------------------FQATTS-LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AI  203 (390)
T ss_dssp             ----------------------------TSSCTT-CCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----EC
T ss_pred             ----------------------------ccCCCC-CCEEECCCCcCCcc---ccccccccceeeccccccccc-----CC
Confidence                                        222333 66666666644332   245566677777766655432     22


Q ss_pred             cccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938          468 LRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE  547 (681)
Q Consensus       468 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  547 (681)
                      .++|+.|++++|. +..++...  +++|+.|++++|.... . ..+..+++|++|++++|...+..+..++.+++|++|+
T Consensus       204 ~~~L~~L~l~~n~-l~~~~~~~--~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          204 PIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             CSSCSEEECCSSC-CCEEECCC--CSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             CCcceEEECCCCe-eeeccccc--cccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence            3567777777766 33444322  3577777777776433 2 3566777777777777766555555566666666666


Q ss_pred             eecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCC
Q 045938          548 IIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKL  627 (681)
Q Consensus       548 l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l  627 (681)
                      +++|+.                   ..++...       ..+++|+.|+++++ .+..+|..+..+++|++|++++| .+
T Consensus       279 L~~n~l-------------------~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i  330 (390)
T 3o6n_A          279 ISNNRL-------------------VALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SI  330 (390)
T ss_dssp             CCSSCC-------------------CEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred             CCCCcC-------------------cccCccc-------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-cc
Confidence            665543                   2222111       23345555555554 55666666677788888888887 45


Q ss_pred             cccCCCCCcccccEEEeCCchh
Q 045938          628 KYFPEKGLPSSLLQLYIGGCPL  649 (681)
Q Consensus       628 ~~l~~~~~~~~L~~L~i~~c~~  649 (681)
                      +.++ ...+++|++|++++|+.
T Consensus       331 ~~~~-~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          331 VTLK-LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CCCC-CCTTCCCSEEECCSSCE
T ss_pred             ceeC-chhhccCCEEEcCCCCc
Confidence            6665 34567788888888763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=2.9e-23  Score=221.84  Aligned_cols=224  Identities=17%  Similarity=0.093  Sum_probs=126.8

Q ss_pred             cccceeEEEEeecCCCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCCcceeeccccCCcccccccCCCcc
Q 045938           29 SFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPCLETLHFEDMQGWEDWIPHGFSQG  108 (681)
Q Consensus        29 ~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  108 (681)
                      .+++|++|+++++ .++.+|.++.+++|++|+++++. ++.++   ++     .+++|++|+++++. +....       
T Consensus        40 ~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~---~~-----~l~~L~~L~Ls~N~-l~~~~-------  101 (457)
T 3bz5_A           40 QLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD---LS-----QNTNLTYLACDSNK-LTNLD-------  101 (457)
T ss_dssp             HHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC---CT-----TCTTCSEEECCSSC-CSCCC-------
T ss_pred             HcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc---cc-----cCCCCCEEECcCCC-Cceee-------
Confidence            4788888888886 56777778888888888888876 66654   22     27788888887743 22221       


Q ss_pred             ccccCCcceEeeccCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECCCCCceeeccccccCCCCcceeec
Q 045938          109 VERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGGCKKIVWESATGHLGSQNSVVCRD  188 (681)
Q Consensus       109 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  188 (681)
                      +..+++|++|+++++ ++++.-...+++|++|+++++......+..+++|++|++++|.                     
T Consensus       102 ~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~---------------------  159 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK---------------------  159 (457)
T ss_dssp             CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS---------------------
T ss_pred             cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC---------------------
Confidence            455777777777775 3332111234445555544443221123334444444444442                     


Q ss_pred             CCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCcc
Q 045938          189 TSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILE  268 (681)
Q Consensus       189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~  268 (681)
                                                 ....   .   .+..+++|+.|+++++ .++.++.           ..+++|+
T Consensus       160 ---------------------------~~~~---~---~~~~l~~L~~L~ls~n-~l~~l~l-----------~~l~~L~  194 (457)
T 3bz5_A          160 ---------------------------KITK---L---DVTPQTQLTTLDCSFN-KITELDV-----------SQNKLLN  194 (457)
T ss_dssp             ---------------------------CCCC---C---CCTTCTTCCEEECCSS-CCCCCCC-----------TTCTTCC
T ss_pred             ---------------------------cccc---c---ccccCCcCCEEECCCC-ccceecc-----------ccCCCCC
Confidence                                       2221   1   1345566666666655 4444331           1235666


Q ss_pred             EEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeecc
Q 045938          269 YIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI  347 (681)
Q Consensus       269 ~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~  347 (681)
                      +|++++|.. ..+  .++.+++|++|++++|. ++.+| ...+++|++|++++|. +..++.    ..+++|+.|+++.
T Consensus       195 ~L~l~~N~l-~~~--~l~~l~~L~~L~Ls~N~-l~~ip-~~~l~~L~~L~l~~N~-l~~~~~----~~l~~L~~L~l~~  263 (457)
T 3bz5_A          195 RLNCDTNNI-TKL--DLNQNIQLTFLDCSSNK-LTEID-VTPLTQLTYFDCSVNP-LTELDV----STLSKLTTLHCIQ  263 (457)
T ss_dssp             EEECCSSCC-SCC--CCTTCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSSC-CSCCCC----TTCTTCCEEECTT
T ss_pred             EEECcCCcC-Cee--ccccCCCCCEEECcCCc-ccccC-ccccCCCCEEEeeCCc-CCCcCH----HHCCCCCEEeccC
Confidence            666666655 333  25566777777777654 55555 5556677777777665 444442    3456666666544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=4.8e-22  Score=209.17  Aligned_cols=306  Identities=17%  Similarity=0.179  Sum_probs=184.4

Q ss_pred             CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC
Q 045938          202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL  281 (681)
Q Consensus       202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l  281 (681)
                      .+.+++.|.+.++.. .   ..+..++..+++|++|+++++ .++.++...+        ..+++|++|++++|......
T Consensus        43 ~l~~l~~l~l~~~~l-~---~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~  109 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM-R---KLPAALLDSFRQVELLNLNDL-QIEEIDTYAF--------AYAHTIQKLYMGFNAIRYLP  109 (390)
T ss_dssp             GGCCCSEEEEESCEE-S---EECTHHHHHCCCCSEEECTTS-CCCEECTTTT--------TTCTTCCEEECCSSCCCCCC
T ss_pred             ccCCceEEEecCCch-h---hCChhHhcccccCcEEECCCC-cccccChhhc--------cCCCCcCEEECCCCCCCcCC
Confidence            468889999888652 2   256666789999999999997 5776655421        34589999999999885555


Q ss_pred             CCCCCCCCCcceEEEeCCCCceeecCC--CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccC
Q 045938          282 PQSPLSLSSLREIEIYGCSSLVSFPEV--ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQL  359 (681)
Q Consensus       282 ~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  359 (681)
                      |..++.+++|++|++++|. ++.++..  ..+++|++|++++|. +..++...+ ..+++|+.|+++++ .++.++. ..
T Consensus       110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~  184 (390)
T 3o6n_A          110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDL-SL  184 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSS-CCSBCCG-GG
T ss_pred             HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCC-cCCcccc-cc
Confidence            6678999999999999886 7777753  458999999999987 555544322 78899999999985 4555432 22


Q ss_pred             CCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHH
Q 045938          360 PPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAE  439 (681)
Q Consensus       360 ~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~  439 (681)
                      .+.++ .+.+.++.. ..+   ...++|++|+++++ .++. ++             ...+++|++|++++|...+.  .
T Consensus       185 l~~L~-~L~l~~n~l-~~~---~~~~~L~~L~l~~n-~l~~-~~-------------~~~~~~L~~L~l~~n~l~~~--~  242 (390)
T 3o6n_A          185 IPSLF-HANVSYNLL-STL---AIPIAVEELDASHN-SINV-VR-------------GPVNVELTILKLQHNNLTDT--A  242 (390)
T ss_dssp             CTTCS-EEECCSSCC-SEE---ECCSSCSEEECCSS-CCCE-EE-------------CCCCSSCCEEECCSSCCCCC--G
T ss_pred             ccccc-eeecccccc-ccc---CCCCcceEEECCCC-eeee-cc-------------ccccccccEEECCCCCCccc--H
Confidence            33444 444443321 111   11224555555553 2222 11             11122366666666544332  3


Q ss_pred             hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCc
Q 045938          440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL  519 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L  519 (681)
                      .+..+++|++|++++|.+.+..|..+..+++|+.|++++|. +..++.....+++|++|++++|. +..+|..+..+++|
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L  320 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL  320 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTC
T ss_pred             HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccccccCcC
Confidence            45556666666666665555555555556666666666554 33444444455566666666654 23444445555566


Q ss_pred             ceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938          520 QQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       520 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      ++|++++|.... ++  ++.+++|++|++++|+
T Consensus       321 ~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          321 ENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             SEEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred             CEEECCCCccce-eC--chhhccCCEEEcCCCC
Confidence            666666555332 21  3344444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4.2e-22  Score=221.27  Aligned_cols=299  Identities=16%  Similarity=0.093  Sum_probs=165.1

Q ss_pred             ccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--
Q 045938          230 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--  307 (681)
Q Consensus       230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--  307 (681)
                      .+.+++.++++++ .++.+|...+        ..+++|++|++++|......|..++.+++|++|++++|. +..++.  
T Consensus        49 ~l~~l~~l~l~~~-~l~~lp~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~  118 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKLPAALL--------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV  118 (597)
T ss_dssp             GGCCCSEEEESSC-EESEECTHHH--------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             cCCCceEEEeeCC-CCCCcCHHHH--------ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence            3566777777765 5666655421        223677777777776644444567777777777777765 555543  


Q ss_pred             CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCc
Q 045938          308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLL  387 (681)
Q Consensus       308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L  387 (681)
                      .+.+++|++|++++|. +..+|...+ ..+++|+.|++++| .+..++...                             
T Consensus       119 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~-----------------------------  166 (597)
T 3oja_B          119 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNN-NLERIEDDT-----------------------------  166 (597)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT-----------------------------
T ss_pred             HcCCCCCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCC-cCCCCChhh-----------------------------
Confidence            2456777777777775 555555433 56677777777664 232221110                             


Q ss_pred             ceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcC
Q 045938          388 EGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHN  467 (681)
Q Consensus       388 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~  467 (681)
                                                  ++.++. |++|++++|.....   .++.+++|+.|++++|.+.+     +..
T Consensus       167 ----------------------------~~~l~~-L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~  209 (597)
T 3oja_B          167 ----------------------------FQATTS-LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAI  209 (597)
T ss_dssp             ----------------------------TTTCTT-CCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EEC
T ss_pred             ----------------------------hhcCCc-CcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccC
Confidence                                        222333 66666665544332   24455666666666665443     222


Q ss_pred             cccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938          468 LRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE  547 (681)
Q Consensus       468 l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  547 (681)
                      .++|+.|++++|. +..++...  .++|+.|++++|....  +..++.+++|+.|++++|...+..|..++.+++|++|+
T Consensus       210 ~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  284 (597)
T 3oja_B          210 PIAVEELDASHNS-INVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  284 (597)
T ss_dssp             CTTCSEEECCSSC-CCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             CchhheeeccCCc-cccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence            3466777777665 33444322  2467777777776433  24566677777777777766665566666666666666


Q ss_pred             eecCcc------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEee
Q 045938          548 IIDNKK------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLEL  621 (681)
Q Consensus       548 l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l  621 (681)
                      +++|..      ...+++|+.|++++|  .+..+|...       ..+++|+.|+++++ .+..++  +..+++|+.|++
T Consensus       285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N--~l~~i~~~~-------~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l  352 (597)
T 3oja_B          285 ISNNRLVALNLYGQPIPTLKVLDLSHN--HLLHVERNQ-------PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTL  352 (597)
T ss_dssp             CTTSCCCEEECSSSCCTTCCEEECCSS--CCCCCGGGH-------HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEEC
T ss_pred             CCCCCCCCCCcccccCCCCcEEECCCC--CCCccCccc-------ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEe
Confidence            666654      123555555555554  333333322       23344444444443 233332  334444555555


Q ss_pred             cCC
Q 045938          622 EDC  624 (681)
Q Consensus       622 ~~c  624 (681)
                      ++|
T Consensus       353 ~~N  355 (597)
T 3oja_B          353 SHN  355 (597)
T ss_dssp             CSS
T ss_pred             eCC
Confidence            444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.4e-21  Score=200.52  Aligned_cols=239  Identities=15%  Similarity=0.179  Sum_probs=142.5

Q ss_pred             CccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCCCceEEEEecCCCCCcc-ccccccCCCCccce
Q 045938          266 ILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPSKLKKIEIRECDALKSL-PEAWMCDTNSSLEI  342 (681)
Q Consensus       266 ~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~  342 (681)
                      +++.++++++.. ..+|..+.  ++++.|++++|. ++.++.  ...+++|++|++++|. +..+ |..+  ..+++|+.
T Consensus        32 ~l~~l~~~~~~l-~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~  104 (330)
T 1xku_A           32 HLRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF--APLVKLER  104 (330)
T ss_dssp             ETTEEECTTSCC-CSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT--TTCTTCCE
T ss_pred             CCeEEEecCCCc-cccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh--cCCCCCCE
Confidence            466666665543 44554332  466666666654 544442  3445666666666655 3333 3333  45666666


Q ss_pred             eeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCC
Q 045938          343 LEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPS  422 (681)
Q Consensus       343 L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~  422 (681)
                      |+++++ .++.++.                                                             .++++
T Consensus       105 L~Ls~n-~l~~l~~-------------------------------------------------------------~~~~~  122 (330)
T 1xku_A          105 LYLSKN-QLKELPE-------------------------------------------------------------KMPKT  122 (330)
T ss_dssp             EECCSS-CCSBCCS-------------------------------------------------------------SCCTT
T ss_pred             EECCCC-cCCccCh-------------------------------------------------------------hhccc
Confidence            666553 2222211                                                             01123


Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcc--cccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLK--ILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI  500 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  500 (681)
                      |++|++++|......+..+.++++|++|++++|.+..  ..+..+.++++|++|++++|. +..+|....  ++|++|++
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l  199 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSLTELHL  199 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTCSEEEC
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccCCEEEC
Confidence            7777777776655555567777777777777777643  445667777788888887766 445655443  57888888


Q ss_pred             ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcC
Q 045938          501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVS  574 (681)
Q Consensus       501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~  574 (681)
                      ++|......+..+..+++|++|++++|...+..+..++.+++|++|++++|..      +..+++|++|++++|  .+..
T Consensus       200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N--~i~~  277 (330)
T 1xku_A          200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN--NISA  277 (330)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS--CCCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC--cCCc
Confidence            88775555566677777888888877775554444456666666666666654      335566666666665  4445


Q ss_pred             CCcc
Q 045938          575 FPPE  578 (681)
Q Consensus       575 l~~~  578 (681)
                      ++..
T Consensus       278 ~~~~  281 (330)
T 1xku_A          278 IGSN  281 (330)
T ss_dssp             CCTT
T ss_pred             cChh
Confidence            5443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=2.1e-21  Score=215.71  Aligned_cols=307  Identities=16%  Similarity=0.156  Sum_probs=207.9

Q ss_pred             CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccC
Q 045938          202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKL  281 (681)
Q Consensus       202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l  281 (681)
                      .+.+++.+.+.++..    ...+..++..+++|+.|+++++ .++.+++..+        ..+++|++|++++|......
T Consensus        49 ~l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~  115 (597)
T 3oja_B           49 TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDL-QIEEIDTYAF--------AYAHTIQKLYMGFNAIRYLP  115 (597)
T ss_dssp             GGCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTS-CCCEECTTTT--------TTCTTCCEEECCSSCCCCCC
T ss_pred             cCCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCC-CCCCCChHHh--------cCCCCCCEEECCCCcCCCCC
Confidence            357788888877542    2356667788999999999997 5777665422        34589999999999875555


Q ss_pred             CCCCCCCCCcceEEEeCCCCceeecCC--CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccC
Q 045938          282 PQSPLSLSSLREIEIYGCSSLVSFPEV--ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQL  359 (681)
Q Consensus       282 ~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  359 (681)
                      |..++.+++|++|++++|. +..++..  ..+++|++|++++|. +..++...+ ..+++|+.|+++++ .++.++. ..
T Consensus       116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~  190 (597)
T 3oja_B          116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDL-SL  190 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTS-CCSBCCG-GG
T ss_pred             HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCC-CCCCcCh-hh
Confidence            6677999999999999886 7777653  568999999999987 555544322 78899999999985 5555542 23


Q ss_pred             CCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHH
Q 045938          360 PPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAE  439 (681)
Q Consensus       360 ~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~  439 (681)
                      .+.++ .+.+.++... .   ....++|++|+++++. ++. +             .+..+++|+.|++++|...+.  .
T Consensus       191 l~~L~-~L~l~~n~l~-~---l~~~~~L~~L~ls~n~-l~~-~-------------~~~~~~~L~~L~L~~n~l~~~--~  248 (597)
T 3oja_B          191 IPSLF-HANVSYNLLS-T---LAIPIAVEELDASHNS-INV-V-------------RGPVNVELTILKLQHNNLTDT--A  248 (597)
T ss_dssp             CTTCS-EEECCSSCCS-E---EECCTTCSEEECCSSC-CCE-E-------------ECSCCSCCCEEECCSSCCCCC--G
T ss_pred             hhhhh-hhhcccCccc-c---ccCCchhheeeccCCc-ccc-c-------------ccccCCCCCEEECCCCCCCCC--h
Confidence            34555 5555543221 1   1122357777776642 332 1             122234577777777765542  4


Q ss_pred             hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCc
Q 045938          440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL  519 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L  519 (681)
                      .+..+++|++|++++|.+.+..|..++++++|+.|++++|. +..++.....+++|+.|++++|.. ..+|..+..+++|
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L  326 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRL  326 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTC
T ss_pred             hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCC-CccCcccccCCCC
Confidence            56777777777777777777777777777777777777766 445666666677777777777764 3566666777777


Q ss_pred             ceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          520 QQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       520 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      +.|++++|...+. +  ++.+++|+.|++++|..
T Consensus       327 ~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          327 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred             CEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCC
Confidence            7777777765432 2  45566666666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=2.2e-21  Score=199.27  Aligned_cols=150  Identities=15%  Similarity=0.144  Sum_probs=81.1

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcc--cccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLK--ILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI  500 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  500 (681)
                      |++|++++|......+..+..+++|++|++++|.+..  ..+..+..+ +|+.|++++|. +..+|....  ++|++|++
T Consensus       125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l  200 (332)
T 2ft3_A          125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHL  200 (332)
T ss_dssp             CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBC
T ss_pred             CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEEC
Confidence            5555555554433323345556666666666655532  334445544 66666666655 334544332  46666666


Q ss_pred             ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcC
Q 045938          501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVS  574 (681)
Q Consensus       501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~  574 (681)
                      ++|......+..+..+++|++|++++|...+..+..++.+++|++|++++|+.      +..+++|+.|++++|  .+..
T Consensus       201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N--~l~~  278 (332)
T 2ft3_A          201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN--NITK  278 (332)
T ss_dssp             CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS--CCCB
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC--CCCc
Confidence            66665444445566666666666666655444444455555555555555543      335556666666665  4444


Q ss_pred             CCcc
Q 045938          575 FPPE  578 (681)
Q Consensus       575 l~~~  578 (681)
                      ++..
T Consensus       279 ~~~~  282 (332)
T 2ft3_A          279 VGVN  282 (332)
T ss_dssp             CCTT
T ss_pred             cChh
Confidence            4443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=3.9e-22  Score=202.68  Aligned_cols=205  Identities=17%  Similarity=0.091  Sum_probs=150.4

Q ss_pred             CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCC-Ccc
Q 045938          418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCA-KLT  496 (681)
Q Consensus       418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~L~  496 (681)
                      .++. |++|++++|...+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|...+.+|..+..++ +|+
T Consensus        99 ~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A           99 KLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             GCTT-CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred             cCCC-CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence            3444 88888888877667777788888888888888888777788888888888888888876557777777776 888


Q ss_pred             eEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCC
Q 045938          497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFP  576 (681)
Q Consensus       497 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~  576 (681)
                      +|++++|.....+|..+..++ |++|++++|...+..+..++.+++|++|++++|...                   ..+
T Consensus       178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~~~  237 (313)
T 1ogq_A          178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-------------------FDL  237 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-------------------CBG
T ss_pred             EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-------------------eec
Confidence            888888887667777777776 888888888766666666777777777777766531                   111


Q ss_pred             ccccccccCCCcccccceeEecccCCcc-cccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhHH
Q 045938          577 PEDIRLRTTLPLPACLASLMIGNFPNLE-RLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIA  651 (681)
Q Consensus       577 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~  651 (681)
                      ...       ..+++|+.|+++++ .+. .+|..+..+++|++|++++|+....+|..+.+++|+.+++++|+.+.
T Consensus       238 ~~~-------~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          238 GKV-------GLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             GGC-------CCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             Ccc-------cccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence            111       23455666666654 344 67777888899999999998555578877778889999999988553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=4.4e-21  Score=196.06  Aligned_cols=231  Identities=23%  Similarity=0.294  Sum_probs=182.9

Q ss_pred             cCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccce
Q 045938          264 SCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEI  342 (681)
Q Consensus       264 ~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~  342 (681)
                      .+++++|++++|.. ..+|..+.++++|++|++++|. +..+|. ...+++|++|++++|. +..+|..+  ..+++|+.
T Consensus        80 ~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCE
T ss_pred             ccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCE
Confidence            47889999998876 5788888889999999999876 556664 4568889999999886 55777765  77889999


Q ss_pred             eeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCC
Q 045938          343 LEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPS  422 (681)
Q Consensus       343 L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~  422 (681)
                      |++++|..+..++..                             +....+.+                    .+..++. 
T Consensus       155 L~L~~n~~~~~~p~~-----------------------------~~~~~~~~--------------------~~~~l~~-  184 (328)
T 4fcg_A          155 LSIRACPELTELPEP-----------------------------LASTDASG--------------------EHQGLVN-  184 (328)
T ss_dssp             EEEEEETTCCCCCSC-----------------------------SEEEC-CC--------------------CEEESTT-
T ss_pred             EECCCCCCccccChh-----------------------------Hhhccchh--------------------hhccCCC-
Confidence            999888766555421                             11111100                    0223444 


Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |++|++++|... .+|..++.+++|++|++++|.+.+ +|..++++++|++|++++|...+.+|..+..+++|++|++++
T Consensus       185 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            999999988655 677788999999999999998875 556788899999999999988888888888899999999999


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecC
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDN  551 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  551 (681)
                      |.....+|..++.+++|+.|++++|...+.+|..++.+++|+.+++..+
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            9988999988999999999999999999999988888888777777644

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.85  E-value=4.1e-20  Score=189.63  Aligned_cols=272  Identities=14%  Similarity=0.080  Sum_probs=185.4

Q ss_pred             cccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCC
Q 045938          231 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVAL  310 (681)
Q Consensus       231 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~  310 (681)
                      .++++.|+++++ .++.++...+        ..+++|++|++++|......|..+..+++|++|++++|. ++.++... 
T Consensus        51 ~~~l~~L~L~~n-~i~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~-  119 (330)
T 1xku_A           51 PPDTALLDLQNN-KITEIKDGDF--------KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM-  119 (330)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTT--------TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC-
T ss_pred             CCCCeEEECCCC-cCCEeChhhh--------ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh-
Confidence            368888888887 5666655321        234888999998887755557788888999999998875 66666543 


Q ss_pred             CCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCccee
Q 045938          311 PSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGL  390 (681)
Q Consensus       311 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L  390 (681)
                      .++|++|++++|. +..++...+ ..+++|+.|+++++. ++.....  +.                  .....++|++|
T Consensus       120 ~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~--~~------------------~~~~l~~L~~L  176 (330)
T 1xku_A          120 PKTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTNP-LKSSGIE--NG------------------AFQGMKKLSYI  176 (330)
T ss_dssp             CTTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSSC-CCGGGBC--TT------------------GGGGCTTCCEE
T ss_pred             cccccEEECCCCc-ccccCHhHh-cCCccccEEECCCCc-CCccCcC--hh------------------hccCCCCcCEE
Confidence            3789999998887 555554433 678888888888753 3221100  00                  01123458888


Q ss_pred             eeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCccc
Q 045938          391 HISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQ  470 (681)
Q Consensus       391 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~  470 (681)
                      +++++. ++. ++             ..++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus       177 ~l~~n~-l~~-l~-------------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  241 (330)
T 1xku_A          177 RIADTN-ITT-IP-------------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  241 (330)
T ss_dssp             ECCSSC-CCS-CC-------------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             ECCCCc-ccc-CC-------------ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence            887743 333 11             112245999999988776666677888899999999998888777777888889


Q ss_pred             ccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCc------ccCCcceeeecccCCCC--CccccCCCCCC
Q 045938          471 LQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLH------NLTSLQQLTIGEGGELP--SLEEDDGLPTN  542 (681)
Q Consensus       471 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~------~l~~L~~L~l~~~~~~~--~~~~~~~~~~~  542 (681)
                      |++|++++|. +..+|..+..+++|++|++++|......+..+.      ..++++.+++++|+...  ..|..+..+++
T Consensus       242 L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~  320 (330)
T 1xku_A          242 LRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  320 (330)
T ss_dssp             CCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             CCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence            9999999886 457887788888899999998875443333332      23678888888887543  33455777777


Q ss_pred             CceeeeecCc
Q 045938          543 LHRLEIIDNK  552 (681)
Q Consensus       543 L~~L~l~~~~  552 (681)
                      ++.+++++|+
T Consensus       321 l~~l~L~~N~  330 (330)
T 1xku_A          321 RAAVQLGNYK  330 (330)
T ss_dssp             GGGEEC----
T ss_pred             eeEEEecccC
Confidence            8888777663

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=9.4e-22  Score=219.13  Aligned_cols=323  Identities=17%  Similarity=0.145  Sum_probs=178.2

Q ss_pred             CCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCC
Q 045938          203 IPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLP  282 (681)
Q Consensus       203 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~  282 (681)
                      +++|++|++.+|............+...+++|++|+++++ .++.+..    ..+..+...+++|++|++++|.. ..++
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~----~~l~~~~~~~~~L~~L~L~~~~~-~~l~  236 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISP----KDLETIARNCRSLVSVKVGDFEI-LELV  236 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCH----HHHHHHHHHCTTCCEEECSSCBG-GGGH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCH----HHHHHHHhhCCCCcEEeccCccH-HHHH
Confidence            4566666666653211100001223456777777777765 3332222    22333334557788888877665 4455


Q ss_pred             CCCCCCCCcceEEEeCCCCce----eecCCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCcccccccc
Q 045938          283 QSPLSLSSLREIEIYGCSSLV----SFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQ  358 (681)
Q Consensus       283 ~~~~~l~~L~~L~L~~~~~l~----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  358 (681)
                      ..+..+++|++|+++.+....    .......+++|+.++++++. ...++..+  ..+++|+.|++++|. +.......
T Consensus       237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~~  312 (592)
T 3ogk_B          237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL-LETEDHCT  312 (592)
T ss_dssp             HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC-CCHHHHHH
T ss_pred             HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc-CCHHHHHH
Confidence            566677778888776532211    11234456777777777643 33444443  566778888887765 33211100


Q ss_pred             CCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcC--------
Q 045938          359 LPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWS--------  430 (681)
Q Consensus       359 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~--------  430 (681)
                      .                     ...+++|++|+++++  +.+        .+++.. ...++. |++|++++        
T Consensus       313 ~---------------------~~~~~~L~~L~L~~~--~~~--------~~l~~~-~~~~~~-L~~L~L~~g~~~~~~~  359 (592)
T 3ogk_B          313 L---------------------IQKCPNLEVLETRNV--IGD--------RGLEVL-AQYCKQ-LKRLRIERGADEQGME  359 (592)
T ss_dssp             H---------------------HTTCTTCCEEEEEGG--GHH--------HHHHHH-HHHCTT-CCEEEEECCCCSSTTS
T ss_pred             H---------------------HHhCcCCCEEeccCc--cCH--------HHHHHH-HHhCCC-CCEEEeecCccccccc
Confidence            0                     011235677766631  211        111111 123344 88888874        


Q ss_pred             --CCCchh--HHHhcccCCCccEEEeecccCcccccCcCcC-cccccEEeecc---CCCceecC------CCCCCCCCcc
Q 045938          431 --CSELES--IAERLDNNTSLETISISECENLKILPSGLHN-LRQLQEIGIWE---CENLVSFP------QGGLPCAKLT  496 (681)
Q Consensus       431 --~~~~~~--~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~-l~~L~~L~l~~---~~~l~~l~------~~~~~~~~L~  496 (681)
                        |.....  +......+++|++|+++.+.+.+..+..++. +++|+.|++++   |..++..|      ..+..+++|+
T Consensus       360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~  439 (592)
T 3ogk_B          360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR  439 (592)
T ss_dssp             STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred             cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence              444332  2223455788888888766666554444443 77788888863   33343321      1133477888


Q ss_pred             eEeeccccc--cccccccC-cccCCcceeeecccCCCC-CccccCCCCCCCceeeeecCcc--------cccCCcccEEE
Q 045938          497 RLEISYCKR--LQVLPKGL-HNLTSLQQLTIGEGGELP-SLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLT  564 (681)
Q Consensus       497 ~L~l~~~~~--l~~~~~~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~  564 (681)
                      +|+++.|..  ....+..+ ..+++|++|++++|...+ .++..+..+++|++|++++|..        ...+++|++|+
T Consensus       440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  519 (592)
T 3ogk_B          440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW  519 (592)
T ss_dssp             EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred             EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence            888876542  22222222 347788888888877543 2344456778888888888874        22578888888


Q ss_pred             Eecc
Q 045938          565 ISGC  568 (681)
Q Consensus       565 l~~~  568 (681)
                      +++|
T Consensus       520 ls~n  523 (592)
T 3ogk_B          520 VQGY  523 (592)
T ss_dssp             EESC
T ss_pred             CcCC
Confidence            8887

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=1.7e-22  Score=225.09  Aligned_cols=390  Identities=12%  Similarity=0.062  Sum_probs=240.0

Q ss_pred             CCCCcceEeecccCCceeeeeccccccccccc-ccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc
Q 045938          202 RIPKLEELEINDMKEQTYIWKSHNELLQDICS-LKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK  280 (681)
Q Consensus       202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  280 (681)
                      .+++|++|++.++.....   ....+...+++ |++|++++|..++.       ..+..+...+++|++|++++|.....
T Consensus       110 ~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~~  179 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDL---DLDRLAKARADDLETLKLDKCSGFTT-------DGLLSIVTHCRKIKTLLMEESSFSEK  179 (592)
T ss_dssp             HCTTCCEEEEESCBCCHH---HHHHHHHHHGGGCCEEEEESCEEEEH-------HHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred             hCCCCCeEEeeccEecHH---HHHHHHHhccccCcEEECcCCCCcCH-------HHHHHHHhhCCCCCEEECccccccCc
Confidence            468899999998742211   11222223555 99999999864432       33444455679999999999875322


Q ss_pred             ----CCCCCCCCCCcceEEEeCCCCce-----eecC-CCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCC
Q 045938          281 ----LPQSPLSLSSLREIEIYGCSSLV-----SFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNS  350 (681)
Q Consensus       281 ----l~~~~~~l~~L~~L~L~~~~~l~-----~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  350 (681)
                          ++.....+++|++|++++|. +.     .++. ...+++|++|++++|. +..++..+  ..+++|+.|.++.+..
T Consensus       180 ~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~  255 (592)
T 3ogk_B          180 DGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNE  255 (592)
T ss_dssp             CSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCC
T ss_pred             chhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhccccccc
Confidence                22233467899999998776 33     1211 1237899999999876 55566544  6778899999876332


Q ss_pred             ccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcC
Q 045938          351 LTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWS  430 (681)
Q Consensus       351 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~  430 (681)
                      .....  ...                  .....+++|+.+.++++..       ..++..     +..++. |++|++++
T Consensus       256 ~~~~~--~~~------------------~~l~~~~~L~~L~l~~~~~-------~~l~~~-----~~~~~~-L~~L~Ls~  302 (592)
T 3ogk_B          256 DIGMP--EKY------------------MNLVFPRKLCRLGLSYMGP-------NEMPIL-----FPFAAQ-IRKLDLLY  302 (592)
T ss_dssp             CTTCT--TSS------------------SCCCCCTTCCEEEETTCCT-------TTGGGG-----GGGGGG-CCEEEETT
T ss_pred             ccchH--HHH------------------HHhhccccccccCccccch-------hHHHHH-----HhhcCC-CcEEecCC
Confidence            21110  000                  0111234578887776311       111111     223444 99999999


Q ss_pred             CCCchhHH-HhcccCCCccEEEeecccCcccccCcCcCcccccEEeecc----------CCCcee--cCCCCCCCCCcce
Q 045938          431 CSELESIA-ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWE----------CENLVS--FPQGGLPCAKLTR  497 (681)
Q Consensus       431 ~~~~~~~~-~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~----------~~~l~~--l~~~~~~~~~L~~  497 (681)
                      |....... ..+..+++|++|+++++-....++....++++|++|++++          |..++.  +......+++|++
T Consensus       303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  382 (592)
T 3ogk_B          303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY  382 (592)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred             CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence            98554433 4468899999999994433333444446688999999994          554432  2222334789999


Q ss_pred             EeeccccccccccccCcc-cCCcceeeecc---cCCCCC------ccccCCCCCCCceeeeecCcc---------c-ccC
Q 045938          498 LEISYCKRLQVLPKGLHN-LTSLQQLTIGE---GGELPS------LEEDDGLPTNLHRLEIIDNKK---------I-WKF  557 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~-l~~L~~L~l~~---~~~~~~------~~~~~~~~~~L~~L~l~~~~~---------~-~~l  557 (681)
                      |+++.+......+..+.. +++|+.|++++   |..++.      ++..+..+++|++|+++.|..         + ..+
T Consensus       383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~  462 (592)
T 3ogk_B          383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS  462 (592)
T ss_dssp             EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred             EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence            999766655544455544 88999999974   333443      233355689999999986652         1 258


Q ss_pred             CcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCccc--ccccccCCCCCCEEeecCCCCCcccCCC--
Q 045938          558 SSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLER--LSSSIVDLQNLTHLELEDCPKLKYFPEK--  633 (681)
Q Consensus       558 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~l~~~--  633 (681)
                      ++|++|++++|......++...       ...++|+.|++++|+ +..  ++..+..+++|++|++++|+ +......  
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l  533 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLM  533 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGG
T ss_pred             ccceEeeccCCCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHH
Confidence            8999999998732211222221       345789999999986 542  44455678999999999996 4433211  


Q ss_pred             -CCcccccEEEeCCc
Q 045938          634 -GLPSSLLQLYIGGC  647 (681)
Q Consensus       634 -~~~~~L~~L~i~~c  647 (681)
                       ..+|.+....+...
T Consensus       534 ~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          534 QMARPYWNIELIPSR  548 (592)
T ss_dssp             GGCCTTEEEEEECCC
T ss_pred             HHhCCCcEEEEecCc
Confidence             12455555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=1.7e-20  Score=192.59  Aligned_cols=270  Identities=16%  Similarity=0.084  Sum_probs=167.5

Q ss_pred             ccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCC
Q 045938          232 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALP  311 (681)
Q Consensus       232 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~  311 (681)
                      ++|+.|+++++ .++.+++..    +    ..+++|++|++++|......|..++.+++|++|++++|. ++.++.... 
T Consensus        54 ~~l~~L~l~~n-~i~~~~~~~----~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-  122 (332)
T 2ft3_A           54 PDTTLLDLQNN-DISELRKDD----F----KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP-  122 (332)
T ss_dssp             TTCCEEECCSS-CCCEECTTT----T----TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC-
T ss_pred             CCCeEEECCCC-cCCccCHhH----h----hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc-
Confidence            45566666654 344443321    1    223666666666666544446667777778888877664 555554333 


Q ss_pred             CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceee
Q 045938          312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLH  391 (681)
Q Consensus       312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~  391 (681)
                      ++|++|++++|. +..++...+ ..+++|+.|+++++ .++.....  +..+                   ...+|++|+
T Consensus       123 ~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~--~~~~-------------------~~l~L~~L~  178 (332)
T 2ft3_A          123 SSLVELRIHDNR-IRKVPKGVF-SGLRNMNCIEMGGN-PLENSGFE--PGAF-------------------DGLKLNYLR  178 (332)
T ss_dssp             TTCCEEECCSSC-CCCCCSGGG-SSCSSCCEEECCSC-CCBGGGSC--TTSS-------------------CSCCCSCCB
T ss_pred             ccCCEEECCCCc-cCccCHhHh-CCCccCCEEECCCC-ccccCCCC--cccc-------------------cCCccCEEE
Confidence            778888887776 555554433 66778888888764 33221100  0000                   000367777


Q ss_pred             eccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccc
Q 045938          392 ISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQL  471 (681)
Q Consensus       392 l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L  471 (681)
                      ++++. ++. ++             ..++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus       179 l~~n~-l~~-l~-------------~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  243 (332)
T 2ft3_A          179 ISEAK-LTG-IP-------------KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL  243 (332)
T ss_dssp             CCSSB-CSS-CC-------------SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred             CcCCC-CCc-cC-------------ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence            76642 222 11             1122358888888887666555678888888888888888877767778888888


Q ss_pred             cEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcc------cCCcceeeecccCCC--CCccccCCCCCCC
Q 045938          472 QEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHN------LTSLQQLTIGEGGEL--PSLEEDDGLPTNL  543 (681)
Q Consensus       472 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~------l~~L~~L~l~~~~~~--~~~~~~~~~~~~L  543 (681)
                      +.|++++|. +..+|..+..+++|++|++++|......+..+..      .++|+.|++++|+..  ...+..+..+++|
T Consensus       244 ~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L  322 (332)
T 2ft3_A          244 RELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR  322 (332)
T ss_dssp             CEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred             CEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence            888888876 4577777777888888888888754433333332      356888888888755  3445557777777


Q ss_pred             ceeeeecCc
Q 045938          544 HRLEIIDNK  552 (681)
Q Consensus       544 ~~L~l~~~~  552 (681)
                      +.+++++|+
T Consensus       323 ~~l~l~~n~  331 (332)
T 2ft3_A          323 LAIQFGNYK  331 (332)
T ss_dssp             TTEEC----
T ss_pred             hhhhccccc
Confidence            777777664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.1e-20  Score=193.00  Aligned_cols=213  Identities=23%  Similarity=0.316  Sum_probs=167.6

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      .+++|++++|... .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.. ..+|..+..+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECC
Confidence            4888888887654 66777788888888888888877 6777788888888888888764 4777777788888888888


Q ss_pred             cccccccccccCcc---------cCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc------cccCCcccEEEEe
Q 045938          502 YCKRLQVLPKGLHN---------LTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK------IWKFSSLRQLTIS  566 (681)
Q Consensus       502 ~~~~l~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~  566 (681)
                      +|.....+|..+..         +++|++|++++|... .+|..++.+++|++|++++|..      +..+++|++|+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            88877777776654         888888888888655 6777788888888888888876      4477888888888


Q ss_pred             ccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeC
Q 045938          567 GCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIG  645 (681)
Q Consensus       567 ~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~  645 (681)
                      +|. ....+|...       ..+++|+.|++++|+.+..+|..+..+++|++|++++|+.++.+|.. +.+++|+.+++.
T Consensus       238 ~n~-~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          238 GCT-ALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TCT-TCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCc-chhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            853 444555544       46778899999988888888888888999999999999888888874 557888888877


Q ss_pred             C
Q 045938          646 G  646 (681)
Q Consensus       646 ~  646 (681)
                      .
T Consensus       310 ~  310 (328)
T 4fcg_A          310 P  310 (328)
T ss_dssp             G
T ss_pred             H
Confidence            5

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=3.8e-23  Score=230.55  Aligned_cols=148  Identities=12%  Similarity=0.108  Sum_probs=80.6

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcc-cCCCccEEEee-----cccCccc------ccCcCcCcccccEEeeccCCCceecC
Q 045938          419 LPPSLKSLDVWSCSELESIAERLD-NNTSLETISIS-----ECENLKI------LPSGLHNLRQLQEIGIWECENLVSFP  486 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~ls-----~~~~~~~------~~~~l~~l~~L~~L~l~~~~~l~~l~  486 (681)
                      +|. |++|.+..+.........+. .+++|++|+++     +|.....      ++..+.++++|+.|+++++-.-..++
T Consensus       371 ~~~-L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~  449 (594)
T 2p1m_B          371 CPK-LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFE  449 (594)
T ss_dssp             CTT-CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             chh-HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHH
Confidence            344 78887766655555444444 57788888887     2233321      11124556777777776521111111


Q ss_pred             CCCCCCCCcceEeeccccccccccccC-cccCCcceeeecccCCCCCcc-ccCCCCCCCceeeeecCcc-------c-cc
Q 045938          487 QGGLPCAKLTRLEISYCKRLQVLPKGL-HNLTSLQQLTIGEGGELPSLE-EDDGLPTNLHRLEIIDNKK-------I-WK  556 (681)
Q Consensus       487 ~~~~~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~-------~-~~  556 (681)
                      .....+++|+.|++++|......+..+ ..+++|++|++++|...+... ..+..+++|++|++++|..       + ..
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  529 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK  529 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence            111125677888887776543333223 457777888887777532222 2234466777777777765       1 24


Q ss_pred             CCcccEEEEec
Q 045938          557 FSSLRQLTISG  567 (681)
Q Consensus       557 l~~L~~L~l~~  567 (681)
                      +|+|+...+..
T Consensus       530 lp~l~i~~~~~  540 (594)
T 2p1m_B          530 MPKLNVEVIDE  540 (594)
T ss_dssp             CTTEEEEEECS
T ss_pred             CCCCEEEEecC
Confidence            56665555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.83  E-value=8.6e-21  Score=192.75  Aligned_cols=224  Identities=14%  Similarity=0.119  Sum_probs=142.1

Q ss_pred             CCccEEeeeC-CcCcccCCCCCCCCCCcceEEEeCCCCceeecC-CCCCCCceEEEEecCCCCCccccccccCCCCccce
Q 045938          265 CILEYIDLRD-CQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEI  342 (681)
Q Consensus       265 ~~L~~L~l~~-~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~  342 (681)
                      ++|++|++++ +...+.+|..++++++|++|++++|.....+|. ...+++|++|++++|.....+|..+  ..+++|++
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~  153 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVG  153 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH--hcCCCCCe
Confidence            5566666663 444445555566666666666665542223332 3345566666666655332444443  45556666


Q ss_pred             eeeccCCCcc-ccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938          343 LEIWICNSLT-YIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP  421 (681)
Q Consensus       343 L~l~~c~~l~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~  421 (681)
                      |+++++. ++ .++                                                     ..     +..+++
T Consensus       154 L~L~~N~-l~~~~p-----------------------------------------------------~~-----l~~l~~  174 (313)
T 1ogq_A          154 ITFDGNR-ISGAIP-----------------------------------------------------DS-----YGSFSK  174 (313)
T ss_dssp             EECCSSC-CEEECC-----------------------------------------------------GG-----GGCCCT
T ss_pred             EECcCCc-ccCcCC-----------------------------------------------------HH-----Hhhhhh
Confidence            6665531 11 111                                                     00     334443


Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      .|++|++++|...+.+|..+..++ |++|++++|.+.+..|..++.+++|+.|++++|.....++. +..+++|++|+++
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR  252 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECC
T ss_pred             cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECc
Confidence            478888887776666666777776 88888888887777777777888888888887764434443 5667788888888


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      +|.....+|..+..+++|++|++++|...+.+|. .+.+++|+.+++++|+
T Consensus       253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCC
Confidence            8877667777788888888888888877666766 3667777777777765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.82  E-value=2.3e-22  Score=216.78  Aligned_cols=220  Identities=18%  Similarity=0.099  Sum_probs=109.7

Q ss_pred             CcEEEEcCCCCchhHHHhcc-----cCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCcee----c-CCC
Q 045938          423 LKSLDVWSCSELESIAERLD-----NNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENLVS----F-PQG  488 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~----l-~~~  488 (681)
                      |++|++++|...+..+..+.     ..++|++|++++|.+...    ++..+..+++|++|++++|.....    + +..
T Consensus       172 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~  251 (461)
T 1z7x_W          172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGL  251 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHH
Confidence            55555555544333222222     234555566555555432    233444455566666655542111    1 111


Q ss_pred             CCCCCCcceEeecccccccc----ccccCcccCCcceeeecccCCCCCcc----ccC-CCCCCCceeeeecCcc------
Q 045938          489 GLPCAKLTRLEISYCKRLQV----LPKGLHNLTSLQQLTIGEGGELPSLE----EDD-GLPTNLHRLEIIDNKK------  553 (681)
Q Consensus       489 ~~~~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~-~~~~~L~~L~l~~~~~------  553 (681)
                      ...+++|++|++++|.....    ++..+..+++|++|++++|......+    ..+ ...++|++|++++|..      
T Consensus       252 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  331 (461)
T 1z7x_W          252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS  331 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence            12345566666666543322    34444455666666666654322111    111 1224566666666654      


Q ss_pred             -----cccCCcccEEEEeccCCCCcCCCccccccccCC-CcccccceeEecccCCcc-----cccccccCCCCCCEEeec
Q 045938          554 -----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTL-PLPACLASLMIGNFPNLE-----RLSSSIVDLQNLTHLELE  622 (681)
Q Consensus       554 -----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~-~~~~~L~~l~l~~~~~l~-----~l~~~~~~~~~L~~L~l~  622 (681)
                           +..+++|++|++++|  .+........  ...+ ...++|++|++++| .+.     .++..+..+++|++|+++
T Consensus       332 ~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l--~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          332 HFSSVLAQNRFLLELQISNN--RLEDAGVREL--CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             HHHHHHHHCSSCCEEECCSS--BCHHHHHHHH--HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             HHHHHHhhCCCccEEEccCC--ccccccHHHH--HHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECC
Confidence                 124567777777765  2322111000  0000 01457777777776 555     677778889999999999


Q ss_pred             CCCCCcccCCC-------CCcccccEEEeCCch
Q 045938          623 DCPKLKYFPEK-------GLPSSLLQLYIGGCP  648 (681)
Q Consensus       623 ~c~~l~~l~~~-------~~~~~L~~L~i~~c~  648 (681)
                      +|+ +......       ....+|+.|++.++.
T Consensus       407 ~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          407 NNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             SSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             CCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence            984 4432110       123457777776653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=1e-21  Score=218.97  Aligned_cols=64  Identities=20%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             ccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCC
Q 045938          230 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGC  299 (681)
Q Consensus       230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~  299 (681)
                      .+++|+.|++++|.  ..+..    ..+..+...+++|++|++++|..+..++..+..+++|++|++..+
T Consensus       182 ~~~~L~~L~l~~~~--~~~~~----~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          182 TYTSLVSLNISCLA--SEVSF----SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             TCCCCCEEECTTCC--SCCCH----HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             cCCcCcEEEecccC--CcCCH----HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            45556666665553  11111    122222233455666666655444444444445555666655544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=8.5e-20  Score=189.14  Aligned_cols=203  Identities=18%  Similarity=0.167  Sum_probs=116.4

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCceecC-CCCCCCCCcceEee
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLTRLEI  500 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l  500 (681)
                      |++|++++|...+..+..+.++++|++|++++|.+....+ ..+.++++|++|++++|..+..++ ..+..+++|++|++
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            6666666665544333346666667777766666554322 345666666666666664344442 34455666666666


Q ss_pred             ccccccccccccCcccCCcceeeecccCCCCCcccc-CCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccc
Q 045938          501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEED-DGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPED  579 (681)
Q Consensus       501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~  579 (681)
                      ++|......|..+..+++|++|++++|.. +.++.. ++                 .+++|++|++++|  .+..++...
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~-----------------~~~~L~~L~L~~n--~l~~~~~~~  241 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVD-----------------VTSSVECLELRDT--DLDTFHFSE  241 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHH-----------------HTTTEEEEEEESC--BCTTCCCC-
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhh-----------------hcccccEEECCCC--ccccccccc
Confidence            66665444455566666666666666553 222221 22                 3455555555554  233322211


Q ss_pred             cccccCCCcccccceeEeccc----CCcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCchh
Q 045938          580 IRLRTTLPLPACLASLMIGNF----PNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCPL  649 (681)
Q Consensus       580 ~~~~~~~~~~~~L~~l~l~~~----~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~  649 (681)
                      ..   .......++.+++.++    ..+..+|..+..+++|++|++++| .++.+|..  ..+++|++|++++|+.
T Consensus       242 l~---~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          242 LS---TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             --------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cc---cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            00   0112334444545443    133457778888999999999998 67788875  3578999999999863

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=6.1e-19  Score=189.10  Aligned_cols=219  Identities=18%  Similarity=0.202  Sum_probs=167.8

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  497 (681)
                      +|+++++|++++|.+....+..+.++++|++|++++|.+.+..+..+.++++|++|++++|. +..++. .+..+++|++
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCE
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCE
Confidence            44568888888887766666778888888888888888887777788888888888888877 444554 3566888888


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccc-cCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCC
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDD  571 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~  571 (681)
                      |++++|......+..+..+++|+.|++++|..++.++. .+..+++|++|++++|..     +..+++|++|++++|  .
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N--~  229 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN--H  229 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS--C
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCC--c
Confidence            88888875544444677888888888888777766654 477788888888888876     457788999999887  5


Q ss_pred             CcCCCccccccccCCCcccccceeEecccCCccccc-ccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCch
Q 045938          572 MVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLS-SSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCP  648 (681)
Q Consensus       572 ~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  648 (681)
                      +..++...+      ..+++|+.|+++++ .+..++ ..+..+++|+.|++++| .++.++..  ..+++|++|++++||
T Consensus       230 l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          230 FPEIRPGSF------HGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CSEECGGGG------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CcccCcccc------cCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            666654433      56678899999886 566664 46788899999999998 67777764  347889999999887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=5.2e-19  Score=179.34  Aligned_cols=227  Identities=17%  Similarity=0.129  Sum_probs=151.8

Q ss_pred             cCCccEEeeeCCcCcccCCCC-CCCCCCcceEEEeCCCCceee----cCCCCCCCceEEEEecCCCCCccccccccCCCC
Q 045938          264 SCILEYIDLRDCQDLVKLPQS-PLSLSSLREIEIYGCSSLVSF----PEVALPSKLKKIEIRECDALKSLPEAWMCDTNS  338 (681)
Q Consensus       264 ~~~L~~L~l~~~~~~~~l~~~-~~~l~~L~~L~L~~~~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  338 (681)
                      +++|++|++++|.. ..+|.. +.++++|++|++++|. +..+    .....+++|++|++++|. +..++..+  ..++
T Consensus        27 ~~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~--~~l~  101 (306)
T 2z66_A           27 PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF--LGLE  101 (306)
T ss_dssp             CTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE--ETCT
T ss_pred             CCCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhc--CCCC
Confidence            36778888887766 455543 5778888888888765 4432    122235677777777765 44455443  4566


Q ss_pred             ccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCC
Q 045938          339 SLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGN  418 (681)
Q Consensus       339 ~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  418 (681)
                      +|++|+++++ .++.++...                                                        .+..
T Consensus       102 ~L~~L~l~~n-~l~~~~~~~--------------------------------------------------------~~~~  124 (306)
T 2z66_A          102 QLEHLDFQHS-NLKQMSEFS--------------------------------------------------------VFLS  124 (306)
T ss_dssp             TCCEEECTTS-EEESSTTTT--------------------------------------------------------TTTT
T ss_pred             CCCEEECCCC-cccccccch--------------------------------------------------------hhhh
Confidence            6666666653 222111000                                                        0333


Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcc-cccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLK-ILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  497 (681)
                      ++. |++|++++|......+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|......+..+..+++|++
T Consensus       125 l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          125 LRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             CTT-CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccC-CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            444 8888888887666666667888888888888888766 56777888888888888888755444666777888888


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCC-CCCceeeeecCcc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLP-TNLHRLEIIDNKK  553 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~  553 (681)
                      |++++|......+..+..+++|+.|++++|...+..+..+..+ ++|++|++++|..
T Consensus       204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            8888887655444467778888888888888777666666665 3677777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=9.6e-19  Score=186.85  Aligned_cols=220  Identities=17%  Similarity=0.213  Sum_probs=163.5

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  497 (681)
                      +|.+++.|++++|.+....+..+.++++|++|++++|.+....+..+.++++|++|++++|. +..++. .+..+++|++
T Consensus        62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCE
T ss_pred             CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCce
Confidence            34458888888887666556677888888888888888777666777788888888888876 444544 4667788888


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccc-cCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCC
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDD  571 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~  571 (681)
                      |++++|......+..+..+++|++|++++|..++.++. .+..+++|++|++++|..     +..+++|++|++++|  .
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N--~  218 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN--H  218 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS--C
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC--c
Confidence            88888875544444677788888888888766666554 477788888888888876     457788888888887  5


Q ss_pred             CcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCch
Q 045938          572 MVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCP  648 (681)
Q Consensus       572 ~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  648 (681)
                      +..++...+      ..+++|+.|+++++ .+..++. .+..+++|+.|++++| .++.++..  ..+++|++|++++||
T Consensus       219 l~~~~~~~~------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          219 LSAIRPGSF------QGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCEECTTTT------TTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             cCccChhhh------ccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            665544332      46678888888885 6666654 6778899999999997 67777764  347889999999887


Q ss_pred             h
Q 045938          649 L  649 (681)
Q Consensus       649 ~  649 (681)
                      .
T Consensus       291 ~  291 (440)
T 3zyj_A          291 W  291 (440)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=4.2e-19  Score=183.85  Aligned_cols=282  Identities=13%  Similarity=0.113  Sum_probs=175.0

Q ss_pred             cccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--C
Q 045938          231 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--V  308 (681)
Q Consensus       231 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~  308 (681)
                      ++.....+.++. .++++|..           .+++|++|++++|......+..+.++++|++|++++|. ++.++.  .
T Consensus        30 C~~~~~c~~~~~-~l~~iP~~-----------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~   96 (353)
T 2z80_A           30 CDRNGICKGSSG-SLNSIPSG-----------LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSF   96 (353)
T ss_dssp             ECTTSEEECCST-TCSSCCTT-----------CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred             CCCCeEeeCCCC-Cccccccc-----------ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhc
Confidence            444444555543 56666653           23678888888877633333367788888888888775 666543  4


Q ss_pred             CCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcc
Q 045938          309 ALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLE  388 (681)
Q Consensus       309 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~  388 (681)
                      ..+++|++|++++|. +..++...+ ..+++|++|+++++ .++.++......                     ..++|+
T Consensus        97 ~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~~~---------------------~l~~L~  152 (353)
T 2z80_A           97 SSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTFLNLLGN-PYKTLGETSLFS---------------------HLTKLQ  152 (353)
T ss_dssp             TTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSEEECTTC-CCSSSCSSCSCT---------------------TCTTCC
T ss_pred             CCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCEEECCCC-CCcccCchhhhc---------------------cCCCCc
Confidence            557888888888876 556665432 67788888888774 454444311111                     123577


Q ss_pred             eeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCc
Q 045938          389 GLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNL  468 (681)
Q Consensus       389 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l  468 (681)
                      +|+++++..++.+ +...         +..++. |++|++++|...+..+..+..+++|++|++++|.+.......+..+
T Consensus       153 ~L~l~~n~~~~~~-~~~~---------~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  221 (353)
T 2z80_A          153 ILRVGNMDTFTKI-QRKD---------FAGLTF-LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT  221 (353)
T ss_dssp             EEEEEESSSCCEE-CTTT---------TTTCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT
T ss_pred             EEECCCCcccccc-CHHH---------ccCCCC-CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc
Confidence            7777776544441 1000         334444 8888888887666666777888888888888887654333334457


Q ss_pred             ccccEEeeccCCCceecCCC---CCCCCCcceEeeccccccc----cccccCcccCCcceeeecccCCCCCcccc-CCCC
Q 045938          469 RQLQEIGIWECENLVSFPQG---GLPCAKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELPSLEED-DGLP  540 (681)
Q Consensus       469 ~~L~~L~l~~~~~l~~l~~~---~~~~~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~  540 (681)
                      ++|+.|++++|......+..   ....+.++.++++++....    .+|..+..+++|++|++++|... .+|.. ++.+
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l  300 (353)
T 2z80_A          222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL  300 (353)
T ss_dssp             TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence            78888888877643211111   1234567777777765432    35666777888888888888755 45544 4677


Q ss_pred             CCCceeeeecCcccccCCccc
Q 045938          541 TNLHRLEIIDNKKIWKFSSLR  561 (681)
Q Consensus       541 ~~L~~L~l~~~~~~~~l~~L~  561 (681)
                      ++|++|++++|.....++.++
T Consensus       301 ~~L~~L~L~~N~~~~~~~~l~  321 (353)
T 2z80_A          301 TSLQKIWLHTNPWDCSCPRID  321 (353)
T ss_dssp             TTCCEEECCSSCBCCCHHHHH
T ss_pred             CCCCEEEeeCCCccCcCCCcH
Confidence            777777777776544444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=1.7e-21  Score=210.03  Aligned_cols=333  Identities=19%  Similarity=0.174  Sum_probs=194.1

Q ss_pred             CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcc--
Q 045938          202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLV--  279 (681)
Q Consensus       202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--  279 (681)
                      .+++|++|++.+|......+......+..+++|++|+++++ .+.+....   .....+....++|++|++++|....  
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~---~l~~~l~~~~~~L~~L~L~~n~i~~~~  101 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVH---CVLQGLQTPSCKIQKLSLQNCCLTGAG  101 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHH---HHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHH---HHHHHHhhCCCceeEEEccCCCCCHHH
Confidence            36788889888887432211122345677899999999987 34431111   1111121111279999999988642  


Q ss_pred             --cCCCCCCCCCCcceEEEeCCCCceeec-----C--CCCCCCceEEEEecCCCCCcc-----ccccccCCCCccceeee
Q 045938          280 --KLPQSPLSLSSLREIEIYGCSSLVSFP-----E--VALPSKLKKIEIRECDALKSL-----PEAWMCDTNSSLEILEI  345 (681)
Q Consensus       280 --~l~~~~~~l~~L~~L~L~~~~~l~~~~-----~--~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~~~~L~~L~l  345 (681)
                        .++..+..+++|++|++++|. +++..     .  ....++|++|++++|. +...     +..+  ..+++|+.|++
T Consensus       102 ~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~L  177 (461)
T 1z7x_W          102 CGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVL--RAKPDFKELTV  177 (461)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH--HHCTTCCEEEC
T ss_pred             HHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHH--hhCCCCCEEEC
Confidence              457778889999999999886 54321     1  1224579999999986 4332     2222  45788999999


Q ss_pred             ccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcE
Q 045938          346 WICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKS  425 (681)
Q Consensus       346 ~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~  425 (681)
                      ++|. +.+.....+...+                 ....++|++|++++|. ++. .....++..     +..++. |++
T Consensus       178 ~~n~-i~~~~~~~l~~~l-----------------~~~~~~L~~L~L~~n~-l~~-~~~~~l~~~-----l~~~~~-L~~  231 (461)
T 1z7x_W          178 SNND-INEAGVRVLCQGL-----------------KDSPCQLEALKLESCG-VTS-DNCRDLCGI-----VASKAS-LRE  231 (461)
T ss_dssp             CSSB-CHHHHHHHHHHHH-----------------HHSCCCCCEEECTTSC-CBT-THHHHHHHH-----HHHCTT-CCE
T ss_pred             cCCC-cchHHHHHHHHHH-----------------hcCCCCceEEEccCCC-CcH-HHHHHHHHH-----HHhCCC-ccE
Confidence            8864 4432211110000                 0011247777777752 222 000001111     223344 888


Q ss_pred             EEEcCCCCchhHH-----HhcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCcee----cCCCC-CC
Q 045938          426 LDVWSCSELESIA-----ERLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENLVS----FPQGG-LP  491 (681)
Q Consensus       426 L~l~~~~~~~~~~-----~~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~----l~~~~-~~  491 (681)
                      |++++|...+...     .....+++|++|++++|.+...    ++..+.++++|++|++++|.....    +.... ..
T Consensus       232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  311 (461)
T 1z7x_W          232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP  311 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred             EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccC
Confidence            8888876544321     2223577888888888876653    455566677888888887763221    11111 12


Q ss_pred             CCCcceEeecccccccc----ccccCcccCCcceeeecccCCCCCccccC----C-CCCCCceeeeecCcc---------
Q 045938          492 CAKLTRLEISYCKRLQV----LPKGLHNLTSLQQLTIGEGGELPSLEEDD----G-LPTNLHRLEIIDNKK---------  553 (681)
Q Consensus       492 ~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~---------  553 (681)
                      .++|++|++++|.....    ++..+..+++|++|++++|...+..+..+    . ..++|++|++++|..         
T Consensus       312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            35788888888775433    34455667888888888876443322212    2 256788888888875         


Q ss_pred             --cccCCcccEEEEecc
Q 045938          554 --IWKFSSLRQLTISGC  568 (681)
Q Consensus       554 --~~~l~~L~~L~l~~~  568 (681)
                        +..+++|++|++++|
T Consensus       392 ~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHCCCCCEEECCSS
T ss_pred             HHHHhCCCccEEECCCC
Confidence              225788888888887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=1.3e-18  Score=176.34  Aligned_cols=221  Identities=17%  Similarity=0.132  Sum_probs=153.3

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcc
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT  496 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~  496 (681)
                      +|+++++|++++|...+..+..+.++++|++|++++|.+...  .+..+..+++|++|++++|. +..++..+..+++|+
T Consensus        26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE  104 (306)
T ss_dssp             CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred             CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCC
Confidence            344588888888765533233467788888888888776532  24445567788888888776 445666666777888


Q ss_pred             eEeecccccccccc-ccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEec
Q 045938          497 RLEISYCKRLQVLP-KGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISG  567 (681)
Q Consensus       497 ~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~  567 (681)
                      +|++++|......+ ..+..+++|++|++++|......+..++.+++|++|++++|..        +..+++|++|++++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            88888877543332 3567778888888888876666666677788888888887764        34677888888888


Q ss_pred             cCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCC-C-CcccccEEEe
Q 045938          568 CDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK-G-LPSSLLQLYI  644 (681)
Q Consensus       568 ~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~-~~~~L~~L~i  644 (681)
                      |  .+..++...+      ..+++|++|+++++ .+..++. .+..+++|++|++++|......+.. . .+++|++|++
T Consensus       185 n--~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          185 C--QLEQLSPTAF------NSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             S--CCCEECTTTT------TTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             C--CcCCcCHHHh------cCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence            7  5555543322      45678888988886 6666665 6778899999999998433334432 2 2358999999


Q ss_pred             CCchh
Q 045938          645 GGCPL  649 (681)
Q Consensus       645 ~~c~~  649 (681)
                      ++|+.
T Consensus       256 ~~N~~  260 (306)
T 2z66_A          256 TQNDF  260 (306)
T ss_dssp             TTCCE
T ss_pred             cCCCe
Confidence            99864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=7.2e-18  Score=180.73  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=71.4

Q ss_pred             cEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCC
Q 045938          235 KRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPS  312 (681)
Q Consensus       235 ~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~  312 (681)
                      +.++..+. .++.+|..           .++++++|++++|......+..+.++++|++|++++|. +..++.  ...++
T Consensus        57 ~~v~c~~~-~l~~iP~~-----------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~  123 (452)
T 3zyi_A           57 SKVVCTRR-GLSEVPQG-----------IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLA  123 (452)
T ss_dssp             CEEECCSS-CCSSCCSC-----------CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred             cEEEECCC-CcCccCCC-----------CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcc
Confidence            34444442 55666543           34778888888888755567778888899999998875 666653  44578


Q ss_pred             CceEEEEecCCCCCccccccccCCCCccceeeeccCCCcccc
Q 045938          313 KLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYI  354 (681)
Q Consensus       313 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  354 (681)
                      +|++|++++|. +..++...+ ..+++|+.|+++++ .++.+
T Consensus       124 ~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~  162 (452)
T 3zyi_A          124 SLNTLELFDNW-LTVIPSGAF-EYLSKLRELWLRNN-PIESI  162 (452)
T ss_dssp             TCCEEECCSSC-CSBCCTTTS-SSCTTCCEEECCSC-CCCEE
T ss_pred             cCCEEECCCCc-CCccChhhh-cccCCCCEEECCCC-Cccee
Confidence            88888888876 666665433 67788888888774 34443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.78  E-value=2.6e-19  Score=182.34  Aligned_cols=235  Identities=11%  Similarity=0.074  Sum_probs=157.5

Q ss_pred             hhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCC
Q 045938          259 QLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNS  338 (681)
Q Consensus       259 ~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  338 (681)
                      .+...+++|++|++++|......|..+..+++|++|++++|. +...+....+++|++|++++|. +..++      ..+
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~------~~~   99 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELL------VGP   99 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEE------ECT
T ss_pred             HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-ccccc------CCC
Confidence            333455788888888887644444567788888888888775 5544445566777777777765 33332      225


Q ss_pred             ccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCC
Q 045938          339 SLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGN  418 (681)
Q Consensus       339 ~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  418 (681)
                      +|+.|+++++ .++.++                                                            ...
T Consensus       100 ~L~~L~l~~n-~l~~~~------------------------------------------------------------~~~  118 (317)
T 3o53_A          100 SIETLHAANN-NISRVS------------------------------------------------------------CSR  118 (317)
T ss_dssp             TCCEEECCSS-CCSEEE------------------------------------------------------------ECC
T ss_pred             CcCEEECCCC-ccCCcC------------------------------------------------------------ccc
Confidence            5666666553 222111                                                            122


Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcC-cCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGL-HNLRQLQEIGIWECENLVSFPQGGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  497 (681)
                      ++. |++|++++|......+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|. +..++.. ..+++|++
T Consensus       119 ~~~-L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~  195 (317)
T 3o53_A          119 GQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKT  195 (317)
T ss_dssp             CSS-CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-CCCTTCCE
T ss_pred             cCC-CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccc-cccccCCE
Confidence            333 8888888887766555677788888888888888877666655 467888999998887 4455443 34788999


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEec
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISG  567 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~  567 (681)
                      |++++|.. ..+|..+..+++|++|++++|... .+|..+..+++|++|++++|..        +..+++|+.|++.+
T Consensus       196 L~Ls~N~l-~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          196 LDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             EECCSSCC-CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             EECCCCcC-CcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence            99988874 456666888888999999888644 5666677777777777777765        22445555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=1.6e-17  Score=182.74  Aligned_cols=260  Identities=27%  Similarity=0.308  Sum_probs=143.0

Q ss_pred             CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceee
Q 045938          265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILE  344 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  344 (681)
                      .++++|+++++.. ..+|..+.  ++|++|++++|. ++.+|.  .+++|++|++++|. +..+|.     .+++|+.|+
T Consensus        40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred             CCCcEEEecCCCc-CccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence            4577777777665 56666554  678888887764 666665  56778888887776 555554     346777777


Q ss_pred             eccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938          345 IWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK  424 (681)
Q Consensus       345 l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~  424 (681)
                      +++| .++.++.  .                        .++|++|+++++ +++. ++              ..+++|+
T Consensus       108 Ls~N-~l~~l~~--~------------------------l~~L~~L~L~~N-~l~~-lp--------------~~l~~L~  144 (622)
T 3g06_A          108 IFSN-PLTHLPA--L------------------------PSGLCKLWIFGN-QLTS-LP--------------VLPPGLQ  144 (622)
T ss_dssp             ECSC-CCCCCCC--C------------------------CTTCCEEECCSS-CCSC-CC--------------CCCTTCC
T ss_pred             CcCC-cCCCCCC--C------------------------CCCcCEEECCCC-CCCc-CC--------------CCCCCCC
Confidence            7663 3433321  0                        113455555442 2222 10              0112355


Q ss_pred             EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938          425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK  504 (681)
Q Consensus       425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~  504 (681)
                      +|++++|...+ ++   ..+++|+.|++++|.+.. +|   ..+++|+.|++++|. +..+|..   +++|+.|++++|.
T Consensus       145 ~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~  212 (622)
T 3g06_A          145 ELSVSDNQLAS-LP---ALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNR  212 (622)
T ss_dssp             EEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC
T ss_pred             EEECcCCcCCC-cC---CccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCc
Confidence            66665554322 22   123455555555554443 22   223455555555544 2233321   2345555555544


Q ss_pred             ccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccccc
Q 045938          505 RLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRT  584 (681)
Q Consensus       505 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~  584 (681)
                      . ..+|..   +++|+.|++++|... .+|                    ..+++|+.|++++|  .+..+|.       
T Consensus       213 l-~~l~~~---~~~L~~L~Ls~N~L~-~lp--------------------~~l~~L~~L~Ls~N--~L~~lp~-------  258 (622)
T 3g06_A          213 L-TSLPAL---PSGLKELIVSGNRLT-SLP--------------------VLPSELKELMVSGN--RLTSLPM-------  258 (622)
T ss_dssp             C-SSCCCC---CTTCCEEECCSSCCS-CCC--------------------CCCTTCCEEECCSS--CCSCCCC-------
T ss_pred             c-cccCCC---CCCCCEEEccCCccC-cCC--------------------CCCCcCcEEECCCC--CCCcCCc-------
Confidence            2 233321   244555555544322 122                    14566677777765  5555654       


Q ss_pred             CCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcc
Q 045938          585 TLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKY  629 (681)
Q Consensus       585 ~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~  629 (681)
                         .+++|+.|+++++ .+..+|..+..+++|+.|++++|+....
T Consensus       259 ---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          259 ---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             ---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             ---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCCCc
Confidence               4467888888885 7778888888888888888888865433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.77  E-value=1.2e-17  Score=178.40  Aligned_cols=244  Identities=16%  Similarity=0.177  Sum_probs=140.6

Q ss_pred             ccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeec--CCCCC
Q 045938          234 LKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFP--EVALP  311 (681)
Q Consensus       234 L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~~  311 (681)
                      .+.++..+ ..++.+|..           .+++++.|++++|......+..+.++++|++|++++|. +..++  ....+
T Consensus        45 ~~~v~c~~-~~l~~iP~~-----------~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l  111 (440)
T 3zyj_A           45 FSKVICVR-KNLREVPDG-----------ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGL  111 (440)
T ss_dssp             SCEEECCS-CCCSSCCSC-----------CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTC
T ss_pred             CCEEEeCC-CCcCcCCCC-----------CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCC
Confidence            34455444 256666654           34778888888887755555678888888888888775 66554  23457


Q ss_pred             CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceee
Q 045938          312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLH  391 (681)
Q Consensus       312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~  391 (681)
                      ++|++|++++|. +..++...+ ..+++|+.|+++++ .++.++...                                 
T Consensus       112 ~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N-~i~~~~~~~---------------------------------  155 (440)
T 3zyj_A          112 ANLNTLELFDNR-LTTIPNGAF-VYLSKLKELWLRNN-PIESIPSYA---------------------------------  155 (440)
T ss_dssp             SSCCEEECCSSC-CSSCCTTTS-CSCSSCCEEECCSC-CCCEECTTT---------------------------------
T ss_pred             ccCCEEECCCCc-CCeeCHhHh-hccccCceeeCCCC-cccccCHHH---------------------------------
Confidence            888888888875 666655433 66778888888764 343332211                                 


Q ss_pred             eccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHH-hcccCCCccEEEeecccCcccccCcCcCccc
Q 045938          392 ISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAE-RLDNNTSLETISISECENLKILPSGLHNLRQ  470 (681)
Q Consensus       392 l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~  470 (681)
                                              +..++. |++|++++|.....++. .+.++++|++|++++|.+.. +| .+..+++
T Consensus       156 ------------------------~~~l~~-L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~  208 (440)
T 3zyj_A          156 ------------------------FNRIPS-LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIK  208 (440)
T ss_dssp             ------------------------TTTCTT-CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSS
T ss_pred             ------------------------hhhCcc-cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcc
Confidence                                    222222 55555555444333322 34555555555555555442 22 3455566


Q ss_pred             ccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeec
Q 045938          471 LQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIID  550 (681)
Q Consensus       471 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  550 (681)
                      |+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++
T Consensus       209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence            66666666553333344555556666666666654444444555666666666666654444444455556666666666


Q ss_pred             Ccc
Q 045938          551 NKK  553 (681)
Q Consensus       551 ~~~  553 (681)
                      |..
T Consensus       289 Np~  291 (440)
T 3zyj_A          289 NPW  291 (440)
T ss_dssp             SCE
T ss_pred             CCc
Confidence            553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=6.2e-18  Score=169.43  Aligned_cols=150  Identities=16%  Similarity=0.158  Sum_probs=114.3

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceec-CCCCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSF-PQGGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~  497 (681)
                      +|+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|..+..+ +..+..+++|++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            3456999999998776655567888999999999999888777888888999999999988755555 556777889999


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC  568 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~  568 (681)
                      |++++|......+..+..+++|++|++++|......+..++.+++|++|++++|..       +..+++|++|++++|
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            99999886665567788889999999998876655555567777777777777754       234555666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.76  E-value=2.2e-18  Score=175.40  Aligned_cols=204  Identities=15%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |++|++++|......+..+..+++|++|++++|.+.+..+  +..+++|++|++++|. +..++.    .++|++|++++
T Consensus        36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~L~l~~  108 (317)
T 3o53_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAAN  108 (317)
T ss_dssp             CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCS
T ss_pred             CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-cccccC----CCCcCEEECCC
Confidence            5555555554444444445555555555555555544332  4445555555555544 333331    24555555555


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------c-ccCCcccEEEEeccCCCCcC
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------I-WKFSSLRQLTISGCDDDMVS  574 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~-~~l~~L~~L~l~~~~~~~~~  574 (681)
                      |......+.   .+++|++|++++|...+..+..++.+++|++|++++|.+       + ..+++|++|++++|  .+..
T Consensus       109 n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N--~l~~  183 (317)
T 3o53_A          109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIYD  183 (317)
T ss_dssp             SCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCCE
T ss_pred             CccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC--cCcc
Confidence            543222211   234455555555544433333344455555555555544       1 13455555555554  3333


Q ss_pred             CCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeCCch
Q 045938          575 FPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCP  648 (681)
Q Consensus       575 l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~  648 (681)
                      ++..        ..+++|+.|+++++ .+..++..+..+++|++|++++| .++.+|.. ..+++|+.|++++|+
T Consensus       184 ~~~~--------~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          184 VKGQ--------VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             EECC--------CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cccc--------cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence            3221        13445555555553 44555544555555555555554 44444442 234555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.76  E-value=9.6e-20  Score=185.08  Aligned_cols=214  Identities=17%  Similarity=0.152  Sum_probs=164.0

Q ss_pred             CcEEEEcCCCCch-hHHHhcc-------cCCCccEEEeecccCcccccCcC--cCcccccEEeeccCCCceecCCCCCCC
Q 045938          423 LKSLDVWSCSELE-SIAERLD-------NNTSLETISISECENLKILPSGL--HNLRQLQEIGIWECENLVSFPQGGLPC  492 (681)
Q Consensus       423 L~~L~l~~~~~~~-~~~~~l~-------~l~~L~~L~ls~~~~~~~~~~~l--~~l~~L~~L~l~~~~~l~~l~~~~~~~  492 (681)
                      +++|++++|.... .++..+.       ++++|++|++++|.+.+..|..+  +.+++|++|++++|... .+|..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhHHHHHH
Confidence            6677777665522 2333333       78999999999999988778776  88999999999998744 345433333


Q ss_pred             -----CCcceEeeccccccccccccCcccCCcceeeecccCCCCC--ccccC--CCCCCCceeeeecCccc---------
Q 045938          493 -----AKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS--LEEDD--GLPTNLHRLEIIDNKKI---------  554 (681)
Q Consensus       493 -----~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~---------  554 (681)
                           ++|++|++++|......+..++.+++|++|++++|...+.  ++..+  +.+++|++|++++|.+-         
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                 7999999999987666667888999999999999986654  23334  78899999999999862         


Q ss_pred             -ccCCcccEEEEeccCCCCcCCC-ccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938          555 -WKFSSLRQLTISGCDDDMVSFP-PEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE  632 (681)
Q Consensus       555 -~~l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  632 (681)
                       .++++|++|++++|  .+...+ ....      ..+++|+.|+++++ .++.+|..+.  ++|++|++++| .++.+|.
T Consensus       224 ~~~l~~L~~L~Ls~N--~l~~~~~~~~~------~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~  291 (312)
T 1wwl_A          224 AAARVQLQGLDLSHN--SLRDAAGAPSC------DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS  291 (312)
T ss_dssp             HHTTCCCSEEECTTS--CCCSSCCCSCC------CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC
T ss_pred             HhcCCCCCEEECCCC--cCCcccchhhh------hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh
Confidence             26689999999997  455543 2211      34689999999996 7888888766  89999999998 7888887


Q ss_pred             CCCcccccEEEeCCchh
Q 045938          633 KGLPSSLLQLYIGGCPL  649 (681)
Q Consensus       633 ~~~~~~L~~L~i~~c~~  649 (681)
                      ...+++|++|++++|+.
T Consensus       292 ~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          292 PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             TTTSCEEEEEECTTCTT
T ss_pred             HhhCCCCCEEeccCCCC
Confidence            66689999999999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=6.4e-18  Score=182.15  Aligned_cols=224  Identities=12%  Similarity=0.066  Sum_probs=161.7

Q ss_pred             HHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccC
Q 045938          256 QQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCD  335 (681)
Q Consensus       256 ~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  335 (681)
                      .+..+...+++|++|++++|......|..+..+++|++|++++|. +...+....+++|++|++++|. +..++.     
T Consensus        25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~-----   97 (487)
T 3oja_A           25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV-----   97 (487)
T ss_dssp             HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE-----
T ss_pred             HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC-----
Confidence            344454556789999999988755556678899999999999876 5554446677888888888875 443332     


Q ss_pred             CCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcc
Q 045938          336 TNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLE  415 (681)
Q Consensus       336 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  415 (681)
                       .++|+.|++++| .+..++                                                            
T Consensus        98 -~~~L~~L~L~~N-~l~~~~------------------------------------------------------------  115 (487)
T 3oja_A           98 -GPSIETLHAANN-NISRVS------------------------------------------------------------  115 (487)
T ss_dssp             -CTTCCEEECCSS-CCCCEE------------------------------------------------------------
T ss_pred             -CCCcCEEECcCC-cCCCCC------------------------------------------------------------
Confidence             256666666653 221111                                                            


Q ss_pred             cCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCc-CcccccEEeeccCCCceecCCCCCCCCC
Q 045938          416 VGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLH-NLRQLQEIGIWECENLVSFPQGGLPCAK  494 (681)
Q Consensus       416 ~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~  494 (681)
                      ...++ +|++|++++|...+..+..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.. ..++. ...+++
T Consensus       116 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~~~~-~~~l~~  192 (487)
T 3oja_A          116 CSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKG-QVVFAK  192 (487)
T ss_dssp             ECCCS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CEEEC-CCCCTT
T ss_pred             ccccC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-ccccc-cccCCC
Confidence            12233 388888888877776677788889999999999988887777765 688999999998874 44544 335788


Q ss_pred             cceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          495 LTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       495 L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      |+.|++++|.. ..+|..+..+++|+.|++++|... .+|..++.+++|+.|++++|..
T Consensus       193 L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          193 LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             CCEEECCSSCC-CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred             CCEEECCCCCC-CCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence            99999999875 456666888899999999998755 4666677777788888877765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=4.5e-18  Score=183.34  Aligned_cols=207  Identities=15%  Similarity=0.132  Sum_probs=139.8

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      +|++|++++|.+....+..+..+++|++|++++|.+.+..|  ++.+++|++|++++|. +..++.    .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECc
Confidence            47777777776666555667777777777777777765544  6677777777777765 444443    2577777777


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cc-cCCcccEEEEeccCCCCc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IW-KFSSLRQLTISGCDDDMV  573 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~-~l~~L~~L~l~~~~~~~~  573 (681)
                      +|......+.   .+++|+.|++++|...+..+..++.+++|++|++++|.+       +. .+++|++|++++|  .+.
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N--~l~  182 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN--FIY  182 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS--CCC
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC--ccc
Confidence            7765443332   356777777777776666565667777777777777765       22 5677777777776  454


Q ss_pred             CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC-CCcccccEEEeCCchhH
Q 045938          574 SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l  650 (681)
                      .++..        ..+++|+.|+++++ .+..+|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+..
T Consensus       183 ~~~~~--------~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DVKGQ--------VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEECC--------CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccccc--------ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence            44432        24677777777775 67777777777778888888776 56666653 44677778888777644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=3.4e-17  Score=164.07  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=87.2

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~  501 (681)
                      |++|++++|...+..+..+..+++|++|++++|.+....+..++.+++|++|++++|. +..++. .+..+++|++|+++
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECC
Confidence            6666666665554445556667777777777777666555556777777777777775 334444 35667777888887


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      +|......|..+..+++|+.|++++|...+..+..+..+++|++|++++|..
T Consensus       186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            7776555566777777888888877766554444466667777777766654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=1.6e-16  Score=174.76  Aligned_cols=256  Identities=22%  Similarity=0.198  Sum_probs=199.8

Q ss_pred             ccccceEEeccCCcCCCcccccccccceeEEEEeecCCCCCCCCCCCCCCcceeeecCCccceeeCccccCCCCCccCCC
Q 045938            6 KNLEQFCISGYGGAKFPTWFGDSSFLKLVTLKFEYCGMCPTLPSVGQLPSLKHLAVCGMTSVKRLGSEFYGNDTPIPFPC   85 (681)
Q Consensus         6 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~   85 (681)
                      .++++|++++++...+|..+.    ++|++|++++| .++.+|.  .+++|++|+++++. +..++.         .+++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~  102 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---------LPPG  102 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---------CCTT
T ss_pred             CCCcEEEecCCCcCccChhhC----CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---------CCCC
Confidence            368899999999999998754    68999999997 6788887  67899999999997 877775         2899


Q ss_pred             cceeeccccCCcccccccCCCccccccCCcceEeeccCccccccCCCCCCCccEEEEccCCCceeecCCCCcccEEEECC
Q 045938           86 LETLHFEDMQGWEDWIPHGFSQGVERFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPSLCKFIIGG  165 (681)
Q Consensus        86 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~  165 (681)
                      |++|+++++ .+..+.        ..+++|+.|+++++ +++ .+|..+++|++|++++|... ..-..+++|+.|++++
T Consensus       103 L~~L~Ls~N-~l~~l~--------~~l~~L~~L~L~~N-~l~-~lp~~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~  170 (622)
T 3g06_A          103 LLELSIFSN-PLTHLP--------ALPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYN  170 (622)
T ss_dssp             CCEEEECSC-CCCCCC--------CCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCS
T ss_pred             CCEEECcCC-cCCCCC--------CCCCCcCEEECCCC-CCC-cCCCCCCCCCEEECcCCcCC-CcCCccCCCCEEECCC
Confidence            999999875 233321        14789999999985 566 67888899999999988532 2223467899999998


Q ss_pred             CCCceeeccccccCCCCcceeecCCCcccccCCCCCCCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCc
Q 045938          166 CKKIVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKL  245 (681)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  245 (681)
                      |....++                            ..+++|+.|.+.++.....        -..+++|+.|++++| .+
T Consensus       171 N~l~~l~----------------------------~~~~~L~~L~Ls~N~l~~l--------~~~~~~L~~L~L~~N-~l  213 (622)
T 3g06_A          171 NQLTSLP----------------------------MLPSGLQELSVSDNQLASL--------PTLPSELYKLWAYNN-RL  213 (622)
T ss_dssp             SCCSCCC----------------------------CCCTTCCEEECCSSCCSCC--------CCCCTTCCEEECCSS-CC
T ss_pred             CCCCCCc----------------------------ccCCCCcEEECCCCCCCCC--------CCccchhhEEECcCC-cc
Confidence            8754432                            2468899999988753221        124589999999987 66


Q ss_pred             cccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCC
Q 045938          246 QSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDAL  325 (681)
Q Consensus       246 ~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l  325 (681)
                      +.++..            +++|++|++++|.. ..+|   ..+++|++|++++|. ++.+|.  .+++|++|++++|. +
T Consensus       214 ~~l~~~------------~~~L~~L~Ls~N~L-~~lp---~~l~~L~~L~Ls~N~-L~~lp~--~~~~L~~L~Ls~N~-L  273 (622)
T 3g06_A          214 TSLPAL------------PSGLKELIVSGNRL-TSLP---VLPSELKELMVSGNR-LTSLPM--LPSGLLSLSVYRNQ-L  273 (622)
T ss_dssp             SSCCCC------------CTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-C
T ss_pred             cccCCC------------CCCCCEEEccCCcc-CcCC---CCCCcCcEEECCCCC-CCcCCc--ccccCcEEeCCCCC-C
Confidence            666532            38899999999866 5677   467899999999885 778877  67899999999986 7


Q ss_pred             CccccccccCCCCccceeeeccCC
Q 045938          326 KSLPEAWMCDTNSSLEILEIWICN  349 (681)
Q Consensus       326 ~~~~~~~~~~~~~~L~~L~l~~c~  349 (681)
                      ..+|..+  ..+++|+.|++++++
T Consensus       274 ~~lp~~l--~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          274 TRLPESL--IHLSSETTVNLEGNP  295 (622)
T ss_dssp             CSCCGGG--GGSCTTCEEECCSCC
T ss_pred             CcCCHHH--hhccccCEEEecCCC
Confidence            7888776  789999999999864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=4.2e-17  Score=158.74  Aligned_cols=202  Identities=16%  Similarity=0.136  Sum_probs=135.1

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeeccc-CcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcc
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECE-NLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLT  496 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~-~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~  496 (681)
                      +|.++++|++++|...+..+..+.++++|++|++++|. +....+..+.++++|++|++++|..+..++. .+..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            45568888888886655444567778888888888886 5444445677777888888877333445553 445677777


Q ss_pred             eEeeccccccccccccCcccCCcc---eeeecccCCCCCccc-cCCCCCCCceeeeecCcccccCCccc-EEEEeccCCC
Q 045938          497 RLEISYCKRLQVLPKGLHNLTSLQ---QLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKKIWKFSSLR-QLTISGCDDD  571 (681)
Q Consensus       497 ~L~l~~~~~l~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~L~-~L~l~~~~~~  571 (681)
                      +|++++|.. ..+|. +..+++|+   +|++++|..+..+++ .+.                 ++++|+ +|++++|  .
T Consensus       109 ~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~-----------------~l~~L~~~L~l~~n--~  167 (239)
T 2xwt_C          109 FLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ-----------------GLCNETLTLKLYNN--G  167 (239)
T ss_dssp             EEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTT-----------------TTBSSEEEEECCSC--C
T ss_pred             EEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCccccc-----------------chhcceeEEEcCCC--C
Confidence            887777764 34555 66666666   777777733333332 234                 445555 6666555  4


Q ss_pred             CcCCCccccccccCCCcccccceeEecccCCcccccc-cccCC-CCCCEEeecCCCCCcccCCCCCcccccEEEeCCchh
Q 045938          572 MVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDL-QNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPL  649 (681)
Q Consensus       572 ~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~  649 (681)
                      +..+|...+       ..++|+.|++++++.++.++. .+..+ ++|+.|++++| .++.+|.. .+++|+.|++++++.
T Consensus       168 l~~i~~~~~-------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          168 FTSVQGYAF-------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT  238 (239)
T ss_dssp             CCEECTTTT-------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred             CcccCHhhc-------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence            555665442       225788888888766888865 56778 99999999997 67888875 678999999999875


Q ss_pred             H
Q 045938          650 I  650 (681)
Q Consensus       650 l  650 (681)
                      +
T Consensus       239 l  239 (239)
T 2xwt_C          239 L  239 (239)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=4.7e-17  Score=162.19  Aligned_cols=197  Identities=19%  Similarity=0.135  Sum_probs=144.1

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceE
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRL  498 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  498 (681)
                      +|+++++|++++|...+..+..+.++++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|++|
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            45569999999997766555578899999999999998887777788889999999999988554444567788999999


Q ss_pred             eeccccccccccccCcccCCcceeeecccCCCC-CccccCCCCCCCceeeeecCcc-------cccCCccc----EEEEe
Q 045938          499 EISYCKRLQVLPKGLHNLTSLQQLTIGEGGELP-SLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLR----QLTIS  566 (681)
Q Consensus       499 ~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~----~L~l~  566 (681)
                      ++++|......+..++.+++|++|++++|.... .+|..++.+++|++|++++|..       +..+++|+    +|+++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            999988655555578889999999999998665 3577788888888888888875       22333444    67777


Q ss_pred             ccCCCCcCCCccccccccCCCcccccceeEecccCCccccccc-ccCCCCCCEEeecCCC
Q 045938          567 GCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSS-IVDLQNLTHLELEDCP  625 (681)
Q Consensus       567 ~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~  625 (681)
                      +|  .+..++...+       ...+|+.|+++++ .++.++.. +..+++|++|++++|+
T Consensus       186 ~n--~l~~~~~~~~-------~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          186 LN--PMNFIQPGAF-------KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             SS--CCCEECTTSS-------CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             CC--cccccCcccc-------CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence            76  4555554331       2235666777664 46666553 3566677777777663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=2.4e-16  Score=157.79  Aligned_cols=176  Identities=18%  Similarity=0.153  Sum_probs=92.9

Q ss_pred             CCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938          421 PSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI  500 (681)
Q Consensus       421 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  500 (681)
                      ++++.|++++|.+....+..+..+++|++|++++|.+....+.  +.+++|++|++++|. +..+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence            3466666666655544455566666666666666665543221  456666666666655 3355555555666666666


Q ss_pred             ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccc
Q 045938          501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDI  580 (681)
Q Consensus       501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~  580 (681)
                      ++|......+..+..+++|++|++++|......+..+..+++|+.|++++|+                   +..+|...+
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-------------------l~~l~~~~~  168 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-------------------LTELPAGLL  168 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-------------------CSCCCTTTT
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-------------------CCccCHHHh
Confidence            6665443333455566666666666665443333334444555555555444                   333333221


Q ss_pred             ccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCC
Q 045938          581 RLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCP  625 (681)
Q Consensus       581 ~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  625 (681)
                            ..+++|+.|+++++ .++.+|..+...++|+.+++++|+
T Consensus       169 ------~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          169 ------NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             ------TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ------cCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence                  22344444444442 444555555555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=3.1e-16  Score=156.22  Aligned_cols=194  Identities=18%  Similarity=0.158  Sum_probs=158.3

Q ss_pred             CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeee
Q 045938          445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTI  524 (681)
Q Consensus       445 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l  524 (681)
                      ++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999998877778999999999999999744333446778999999999999876666678899999999999


Q ss_pred             cccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccc---
Q 045938          525 GEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLA---  593 (681)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~---  593 (681)
                      ++|......+..++.+++|++|++++|..        +.++++|++|++++|  .+..++...+      ...++|+   
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~l~  179 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDL------RVLHQMPLLN  179 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS--CCCEECGGGG------HHHHTCTTCC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC--CCCcCCHHHh------hhhhhccccc
Confidence            99987766555689999999999999986        347899999999998  6666665432      2344555   


Q ss_pred             -eeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCch
Q 045938          594 -SLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCP  648 (681)
Q Consensus       594 -~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  648 (681)
                       +++++++ .+..++.......+|+.|++++| .++.+|..  ..+++|++|++++||
T Consensus       180 l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          180 LSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             EEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             eeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence             7888885 78888887777779999999998 68888774  347999999999654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=2.7e-16  Score=153.01  Aligned_cols=211  Identities=18%  Similarity=0.175  Sum_probs=144.8

Q ss_pred             cccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhH-HHhcccCCCccEE
Q 045938          372 GIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESI-AERLDNNTSLETI  450 (681)
Q Consensus       372 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L  450 (681)
                      |..+..++.  ..+++++|+++++ +++. .+...         +..++. |++|++++|...+.+ +..+.++++|++|
T Consensus        20 c~~l~~ip~--~~~~l~~L~l~~n-~l~~-i~~~~---------~~~l~~-L~~L~l~~n~~l~~i~~~~f~~l~~L~~L   85 (239)
T 2xwt_C           20 CKDIQRIPS--LPPSTQTLKLIET-HLRT-IPSHA---------FSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTHI   85 (239)
T ss_dssp             ECSCSSCCC--CCTTCCEEEEESC-CCSE-ECTTT---------TTTCTT-CCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred             ccCccccCC--CCCcccEEEEeCC-cceE-ECHHH---------ccCCCC-CcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence            444666766  3458999999984 4554 22111         445666 999999999734444 4578999999999


Q ss_pred             Eeec-ccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcc---eEeeccccccccccc-cCcccCCcc-eeee
Q 045938          451 SISE-CENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT---RLEISYCKRLQVLPK-GLHNLTSLQ-QLTI  524 (681)
Q Consensus       451 ~ls~-~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~---~L~l~~~~~l~~~~~-~l~~l~~L~-~L~l  524 (681)
                      ++++ |.+....+..+.++++|++|++++|. +..+|. +..+++|+   +|++++|..+..++. .+..+++|+ .|++
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence            9999 77776666788899999999999987 455776 77788888   999999934555554 588899999 9999


Q ss_pred             cccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcc-cccceeEecccCCc
Q 045938          525 GEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLP-ACLASLMIGNFPNL  603 (681)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~-~~L~~l~l~~~~~l  603 (681)
                      ++|... .++......++|++|++++|+                  .+..++...+      ... ++|+.|+++++ .+
T Consensus       164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~------------------~l~~i~~~~~------~~l~~~L~~L~l~~N-~l  217 (239)
T 2xwt_C          164 YNNGFT-SVQGYAFNGTKLDAVYLNKNK------------------YLTVIDKDAF------GGVYSGPSLLDVSQT-SV  217 (239)
T ss_dssp             CSCCCC-EECTTTTTTCEEEEEECTTCT------------------TCCEECTTTT------TTCSBCCSEEECTTC-CC
T ss_pred             CCCCCc-ccCHhhcCCCCCCEEEcCCCC------------------CcccCCHHHh------hccccCCcEEECCCC-cc
Confidence            999755 555432222555555555552                  1333333221      233 55666666663 56


Q ss_pred             ccccccccCCCCCCEEeecCCCC
Q 045938          604 ERLSSSIVDLQNLTHLELEDCPK  626 (681)
Q Consensus       604 ~~l~~~~~~~~~L~~L~l~~c~~  626 (681)
                      +.+|..  .|++|+.|+++++..
T Consensus       218 ~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          218 TALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             CCCCCT--TCTTCSEEECTTC--
T ss_pred             ccCChh--HhccCceeeccCccC
Confidence            666654  677888888877643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=1.6e-16  Score=161.21  Aligned_cols=217  Identities=14%  Similarity=0.117  Sum_probs=162.2

Q ss_pred             CcEEEEcCCCCchhHH---HhcccCCCccEEEeecccCcccccCcC--cCcccccEEeeccCCCceecC----CCCCCCC
Q 045938          423 LKSLDVWSCSELESIA---ERLDNNTSLETISISECENLKILPSGL--HNLRQLQEIGIWECENLVSFP----QGGLPCA  493 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~ls~~~~~~~~~~~l--~~l~~L~~L~l~~~~~l~~l~----~~~~~~~  493 (681)
                      ++.+.+.++.......   .....+++|++|++++|.+.+..|..+  ..+++|++|++++|......+    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            7788888876644321   123345779999999998888878777  888999999999887544322    1234578


Q ss_pred             CcceEeeccccccccccccCcccCCcceeeecccCCCCC--cc--ccCCCCCCCceeeeecCcc----------cccCCc
Q 045938          494 KLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS--LE--EDDGLPTNLHRLEIIDNKK----------IWKFSS  559 (681)
Q Consensus       494 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~--~~~~~~~~L~~L~l~~~~~----------~~~l~~  559 (681)
                      +|++|++++|......+..++.+++|++|++++|...+.  ++  ..++.+++|++|++++|..          +.++++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~  225 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ  225 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence            899999999987666667888899999999999976542  22  2236788999999999987          136689


Q ss_pred             ccEEEEeccCCCCcCC-CccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCccc
Q 045938          560 LRQLTISGCDDDMVSF-PPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSS  638 (681)
Q Consensus       560 L~~L~l~~~~~~~~~l-~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~  638 (681)
                      |++|++++|  .+..+ |....    ....+++|++|+++++ .++.+|..+.  ++|++|++++| .++.+|....+++
T Consensus       226 L~~L~Ls~N--~l~~~~p~~~~----~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~  295 (310)
T 4glp_A          226 PHSLDLSHN--SLRATVNPSAP----RCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPE  295 (310)
T ss_dssp             CSSEECTTS--CCCCCCCSCCS----SCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCC
T ss_pred             CCEEECCCC--CCCccchhhHH----hccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCC
Confidence            999999997  55554 44331    1122479999999986 7888888764  89999999998 7777776666899


Q ss_pred             ccEEEeCCchh
Q 045938          639 LLQLYIGGCPL  649 (681)
Q Consensus       639 L~~L~i~~c~~  649 (681)
                      |++|++++|+.
T Consensus       296 L~~L~L~~N~l  306 (310)
T 4glp_A          296 VDNLTLDGNPF  306 (310)
T ss_dssp             CSCEECSSTTT
T ss_pred             ccEEECcCCCC
Confidence            99999999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=8.9e-16  Score=152.25  Aligned_cols=180  Identities=18%  Similarity=0.211  Sum_probs=105.1

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  497 (681)
                      +|+++++|++++|......+..+.++++|++|++++|.+....+..+.++++|++|++++|.. ..++. .+..+++|++
T Consensus        35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAE  113 (270)
T ss_dssp             CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCE
T ss_pred             CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCE
Confidence            344577777777765544444667777777777777776655455556677777777777663 33443 3455677777


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPP  577 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~  577 (681)
                      |++++|......+..+..+++|++|++++|......+..++.+++|                 ++|++++|  .+..++.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------------~~L~L~~n--~l~~~~~  174 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-----------------KELRLYNN--QLKRVPE  174 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------------CEEECCSS--CCSCCCT
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-----------------ceeEecCC--cCcEeCh
Confidence            7777776544444455667777777777775443333334444444                 44444444  3333433


Q ss_pred             cccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCC
Q 045938          578 EDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCP  625 (681)
Q Consensus       578 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  625 (681)
                      ..+      ..+++|+.|+++++ .++.++. .+..+++|+.|++++|+
T Consensus       175 ~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          175 GAF------DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hHh------ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            221      23345555555553 4555554 35566777777777764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=6.5e-17  Score=164.12  Aligned_cols=189  Identities=20%  Similarity=0.175  Sum_probs=115.7

Q ss_pred             CcEEEEcCCCCchhHHHhc--ccCCCccEEEeecccCcccccCcCcCc-----ccccEEeeccCCCceecCCCCCCCCCc
Q 045938          423 LKSLDVWSCSELESIAERL--DNNTSLETISISECENLKILPSGLHNL-----RQLQEIGIWECENLVSFPQGGLPCAKL  495 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~ls~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~l~~~~~~~~~L  495 (681)
                      |++|++++|...+.+|..+  ..+++|++|++++|.+.+. |..++.+     ++|++|++++|......+..+..+++|
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence            6666666665554454443  5566666666666665554 4444444     566666666665333233455556666


Q ss_pred             ceEeecccccccc--ccccC--cccCCcceeeecccCCCC--Ccc-ccCCCCCCCceeeeecCcc--------cccCCcc
Q 045938          496 TRLEISYCKRLQV--LPKGL--HNLTSLQQLTIGEGGELP--SLE-EDDGLPTNLHRLEIIDNKK--------IWKFSSL  560 (681)
Q Consensus       496 ~~L~l~~~~~l~~--~~~~l--~~l~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~--------~~~l~~L  560 (681)
                      ++|++++|.....  ++..+  ..+++|++|++++|....  .++ ..+..+++|++|++++|..        ...+++|
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence            6666666654332  22222  556666666666665431  111 1223456666666666654        1135778


Q ss_pred             cEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCC
Q 045938          561 RQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCP  625 (681)
Q Consensus       561 ~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  625 (681)
                      ++|++++|  .+..+|...         +++|+.|+++++ .++.+|. +..+++|++|++++|+
T Consensus       256 ~~L~Ls~N--~l~~ip~~~---------~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          256 NSLNLSFT--GLKQVPKGL---------PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CEEECTTS--CCSSCCSSC---------CSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             CEEECCCC--ccChhhhhc---------cCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence            88888887  566777643         378999999985 7888876 8899999999999984

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=1.1e-15  Score=151.73  Aligned_cols=197  Identities=18%  Similarity=0.196  Sum_probs=139.7

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCCcceEee
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAKLTRLEI  500 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l  500 (681)
                      ..+.++++++... .+|..+.  +++++|++++|.+....+..+.++++|++|++++|. +..++.. +..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence            3677777776543 4554333  578888888888776666678888888888888776 4455554 356778888888


Q ss_pred             ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccc
Q 045938          501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDI  580 (681)
Q Consensus       501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~  580 (681)
                      ++|......+..+..+++|++|++++|......+..++.                 +++|++|++++|  .+..++...+
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------l~~L~~L~Ls~n--~l~~~~~~~~  153 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-----------------LTKLTYLSLGYN--ELQSLPKGVF  153 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-----------------CTTCCEEECCSS--CCCCCCTTTT
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-----------------CcCCCEEECCCC--cCCccCHhHc
Confidence            887754433445677788888888887755544443444                 455555555555  4555665432


Q ss_pred             ccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCchh
Q 045938          581 RLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCPL  649 (681)
Q Consensus       581 ~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~  649 (681)
                            ..+++|+.|+++++ .+..++. .+..+++|++|++++| .++.++..  ..+++|+.|++++||.
T Consensus       154 ------~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          154 ------DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             ------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ------cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence                  46789999999996 7888876 4788999999999998 77888774  3478999999999873

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=8.9e-16  Score=153.61  Aligned_cols=104  Identities=14%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             ccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecC
Q 045938          228 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE  307 (681)
Q Consensus       228 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~  307 (681)
                      +..+++++.++++++ .++.+|..           .++++++|++++|......+..+..+++|++|++++|. ++.++.
T Consensus         6 ~~~l~~l~~l~~~~~-~l~~ip~~-----------~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~   72 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLTALPPD-----------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV   72 (290)
T ss_dssp             EECSTTCCEEECTTS-CCSSCCSC-----------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC
T ss_pred             ccccCCccEEECCCC-CCCcCCCC-----------CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC
Confidence            366778888888875 66776654           34678888888887755556677788888888888765 666666


Q ss_pred             CCCCCCceEEEEecCCCCCccccccccCCCCccceeeecc
Q 045938          308 VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWI  347 (681)
Q Consensus       308 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~  347 (681)
                      .+.+++|++|++++|. +..+|..+  ..+++|+.|++++
T Consensus        73 ~~~l~~L~~L~Ls~N~-l~~l~~~~--~~l~~L~~L~l~~  109 (290)
T 1p9a_G           73 DGTLPVLGTLDLSHNQ-LQSLPLLG--QTLPALTVLDVSF  109 (290)
T ss_dssp             CSCCTTCCEEECCSSC-CSSCCCCT--TTCTTCCEEECCS
T ss_pred             CCCCCcCCEEECCCCc-CCcCchhh--ccCCCCCEEECCC
Confidence            6677778888887765 55555443  4555555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.64  E-value=1.2e-16  Score=158.58  Aligned_cols=145  Identities=18%  Similarity=0.090  Sum_probs=84.3

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~  501 (681)
                      |++|++++|...+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|. +..++. .+..+++|++|+++
T Consensus        87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECC
Confidence            5555555554433333334555666666666666555445555666666666666664 333333 23456667777777


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEecc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGC  568 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~  568 (681)
                      +|......+..++.+++|++|++++|...+..+..++.+++|++|++++|.....+++|+.|++..|
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN  232 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence            7664433333456667777777777765554444456667777777776666556666666665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.64  E-value=8.6e-16  Score=152.52  Aligned_cols=78  Identities=17%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceee
Q 045938          265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILE  344 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  344 (681)
                      ++|++|++++|.. ..++ .+..+++|++|++++|. +..++....+++|++|++++|. +..++...+ ..+++|+.|+
T Consensus        41 ~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPNGVF-DKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEE
T ss_pred             cceeeeeeCCCCc-cccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccChhHh-cCCcCCCEEE
Confidence            4455555555443 2332 24455555555555543 4444444445555555555554 333333221 3445555555


Q ss_pred             ecc
Q 045938          345 IWI  347 (681)
Q Consensus       345 l~~  347 (681)
                      +++
T Consensus       116 L~~  118 (272)
T 3rfs_A          116 LVE  118 (272)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=1.3e-14  Score=149.53  Aligned_cols=219  Identities=19%  Similarity=0.127  Sum_probs=166.7

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCceecC-CCCCCCCCcc
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLT  496 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~  496 (681)
                      +|.++++|++++|.+....+..+.++++|++|++++|.+.+.++ ..+.++++++.+...++..+..++ ..+..+++|+
T Consensus        28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            45679999999987654334568999999999999999877655 456788888776555444466664 4567789999


Q ss_pred             eEeeccccccccccccCcccCCcceeeecccCCCCCccc-cCCCC-CCCceeeeecCcc------cccCCcccEEEEecc
Q 045938          497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE-DDGLP-TNLHRLEIIDNKK------IWKFSSLRQLTISGC  568 (681)
Q Consensus       497 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~------~~~l~~L~~L~l~~~  568 (681)
                      +|++++|......+..+....++..+++.++..+..++. .+..+ ..++.|++++|++      ....++|++|++.+|
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence            999999885443333455667788899988766666654 34444 4688999999987      346678999999863


Q ss_pred             CCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCc
Q 045938          569 DDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGC  647 (681)
Q Consensus       569 ~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c  647 (681)
                       ..+..+|.+.+      ..+++|+.|+++++ +++.+|..  .|.+|+.|.+.+|+.++.+|....+++|+.+++.++
T Consensus       188 -n~l~~i~~~~f------~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          188 -NNLEELPNDVF------HGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             -TTCCCCCTTTT------TTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             -CcccCCCHHHh------ccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence             37888887654      56789999999996 89999863  477899999999999999998777899999999753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=2e-14  Score=148.23  Aligned_cols=156  Identities=19%  Similarity=0.118  Sum_probs=81.9

Q ss_pred             HHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCC-CCC-CCcceEeeccccccccccccCcc
Q 045938          438 AERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGG-LPC-AKLTRLEISYCKRLQVLPKGLHN  515 (681)
Q Consensus       438 ~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~~~-~~L~~L~l~~~~~l~~~~~~l~~  515 (681)
                      +..+..+++|++|++++|.+....+..+....++..+++.++..+..++... ..+ ..++.|++++|. +..++.....
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~  175 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFN  175 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSST
T ss_pred             chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcc
Confidence            3345555556666665555544434344444555566665555555554422 222 246666666665 3445555555


Q ss_pred             cCCcceeeecccCCCCCccc-cCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccce
Q 045938          516 LTSLQQLTIGEGGELPSLEE-DDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLAS  594 (681)
Q Consensus       516 l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~  594 (681)
                      ..+|+++.+.++..++.+|. .++.++                 +|++|++++|  .+..+|.         ..+.+|++
T Consensus       176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~-----------------~L~~LdLs~N--~l~~lp~---------~~~~~L~~  227 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELPNDVFHGAS-----------------GPVILDISRT--RIHSLPS---------YGLENLKK  227 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCCTTTTTTEE-----------------CCSEEECTTS--CCCCCCS---------SSCTTCCE
T ss_pred             ccchhHHhhccCCcccCCCHHHhccCc-----------------ccchhhcCCC--CcCccCh---------hhhccchH
Confidence            55666666665555555543 233333                 3333333333  3444444         23455666


Q ss_pred             eEecccCCcccccccccCCCCCCEEeecC
Q 045938          595 LMIGNFPNLERLSSSIVDLQNLTHLELED  623 (681)
Q Consensus       595 l~l~~~~~l~~l~~~~~~~~~L~~L~l~~  623 (681)
                      |++.++.+++.+|. +..+++|+.+++.+
T Consensus       228 L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          228 LRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             EECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             hhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            66666666666663 56666777776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=9e-17  Score=165.19  Aligned_cols=213  Identities=13%  Similarity=0.093  Sum_probs=143.3

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccc-ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKI-LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI  500 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  500 (681)
                      .++.|+++++...+.. ..+..+++|++|++++|.+.+. ++..+.++++|++|++++|......+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccc-hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            3888888887655443 3466788888888888886654 6666778888888888888644445555566788888888


Q ss_pred             ccccccc--cccccCcccCCcceeeecccCCCCC--ccccCCCCC-CCceeeeecCc--c--------cccCCcccEEEE
Q 045938          501 SYCKRLQ--VLPKGLHNLTSLQQLTIGEGGELPS--LEEDDGLPT-NLHRLEIIDNK--K--------IWKFSSLRQLTI  565 (681)
Q Consensus       501 ~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~-~L~~L~l~~~~--~--------~~~l~~L~~L~l  565 (681)
                      ++|....  .++..+..+++|++|++++|..+..  ++..+..++ +|++|++++|.  .        +.++++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            8885444  3555677788888888888833332  455567778 88888888884  2        236888888888


Q ss_pred             eccCCCCc-CCCccccccccCCCcccccceeEecccCCcccc-cccccCCCCCCEEeecCCCCCcccCCCCC---ccccc
Q 045938          566 SGCDDDMV-SFPPEDIRLRTTLPLPACLASLMIGNFPNLERL-SSSIVDLQNLTHLELEDCPKLKYFPEKGL---PSSLL  640 (681)
Q Consensus       566 ~~~~~~~~-~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~  640 (681)
                      ++|. .+. ..+...       ...++|++|++++|..+..- ...+..+++|+.|++++|     ++..++   ...++
T Consensus       230 ~~~~-~l~~~~~~~l-------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~  296 (336)
T 2ast_B          230 SDSV-MLKNDCFQEF-------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALP  296 (336)
T ss_dssp             TTCT-TCCGGGGGGG-------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHST
T ss_pred             CCCC-cCCHHHHHHH-------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCc
Confidence            8863 122 222222       34578888888887633211 114667888888888887     443222   24577


Q ss_pred             EEEeCCch
Q 045938          641 QLYIGGCP  648 (681)
Q Consensus       641 ~L~i~~c~  648 (681)
                      .|++++|.
T Consensus       297 ~L~l~~n~  304 (336)
T 2ast_B          297 HLQINCSH  304 (336)
T ss_dssp             TSEESCCC
T ss_pred             ceEEeccc
Confidence            77776443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.61  E-value=3.1e-15  Score=151.27  Aligned_cols=190  Identities=17%  Similarity=0.202  Sum_probs=148.6

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceE
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRL  498 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  498 (681)
                      ++. |++|++++|.... ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|. +..++ .+..+++|++|
T Consensus        40 l~~-L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           40 LDG-ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHT-CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred             cCC-cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence            444 9999999986544 43 57889999999999998876544  8889999999999987 44555 46778899999


Q ss_pred             eeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCc
Q 045938          499 EISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMV  573 (681)
Q Consensus       499 ~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~  573 (681)
                      ++++|.. ..++. +..+++|++|++++|...+ +++ ++.+++|++|++++|..     +..+++|++|++++|  .+.
T Consensus       113 ~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n--~l~  186 (308)
T 1h6u_A          113 DLTSTQI-TDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN--KIS  186 (308)
T ss_dssp             ECTTSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCC
T ss_pred             ECCCCCC-CCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC--ccC
Confidence            9999985 44544 7889999999999997544 444 78889999999999976     457889999999987  566


Q ss_pred             CCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC
Q 045938          574 SFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE  632 (681)
Q Consensus       574 ~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~  632 (681)
                      .++. .       ..+++|+.|+++++ .+..++. +..+++|+.|++++| .+...|.
T Consensus       187 ~~~~-l-------~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          187 DISP-L-------ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             CCGG-G-------GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEE-EEECCCE
T ss_pred             cChh-h-------cCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCC-eeecCCe
Confidence            6554 1       46778899999886 6777764 778899999999887 4555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=1.5e-15  Score=153.90  Aligned_cols=175  Identities=15%  Similarity=0.123  Sum_probs=106.9

Q ss_pred             CcEEEEcCCCCchhHH----HhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCcee--cCC--CCCCCCC
Q 045938          423 LKSLDVWSCSELESIA----ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVS--FPQ--GGLPCAK  494 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~--~~~~~~~  494 (681)
                      |++|++++|......+    ..+..+++|++|++++|.+....+..++++++|++|++++|...+.  ++.  ....+++
T Consensus       119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~  198 (310)
T 4glp_A          119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA  198 (310)
T ss_dssp             CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred             CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC
Confidence            6677776666544221    2344566677777776666655556666666677777766654321  221  2245566


Q ss_pred             cceEeeccccccccccc----cCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCC
Q 045938          495 LTRLEISYCKRLQVLPK----GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDD  570 (681)
Q Consensus       495 L~~L~l~~~~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~  570 (681)
                      |++|++++|.. ..++.    .++.+++|++|++++|...+..|+.++.+.              .+++|++|++++|  
T Consensus       199 L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--------------~~~~L~~L~Ls~N--  261 (310)
T 4glp_A          199 IQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM--------------WSSALNSLNLSFA--  261 (310)
T ss_dssp             CCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC--------------CCTTCCCEECCSS--
T ss_pred             CCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc--------------CcCcCCEEECCCC--
Confidence            66666666653 22222    134556666666666665554444333321              1256666666665  


Q ss_pred             CCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCC
Q 045938          571 DMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCP  625 (681)
Q Consensus       571 ~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  625 (681)
                      .+..+|..         .+++|+.|+++++ .++.+|. +..+++|+.|++++|+
T Consensus       262 ~l~~lp~~---------~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          262 GLEQVPKG---------LPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCSCCSC---------CCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred             CCCchhhh---------hcCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence            45566663         3478899999885 7787765 6788999999999985

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=8.6e-15  Score=147.95  Aligned_cols=190  Identities=18%  Similarity=0.188  Sum_probs=141.9

Q ss_pred             CCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccC
Q 045938          384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPS  463 (681)
Q Consensus       384 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~  463 (681)
                      +++|++|+++++ .++.+ +     +      +..++. |++|++++|...+ ++. +..+++|++|++++|.+.+.  .
T Consensus        40 l~~L~~L~l~~~-~i~~l-~-----~------~~~l~~-L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~  101 (308)
T 1h6u_A           40 LDGITTLSAFGT-GVTTI-E-----G------VQYLNN-LIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--S  101 (308)
T ss_dssp             HHTCCEEECTTS-CCCCC-T-----T------GGGCTT-CCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--G
T ss_pred             cCCcCEEEeeCC-CccCc-h-----h------hhccCC-CCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--h
Confidence            357889998885 34431 1     0      444555 9999999986654 333 88899999999999987653  3


Q ss_pred             cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCC
Q 045938          464 GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNL  543 (681)
Q Consensus       464 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  543 (681)
                      .+..+++|++|++++|. +..++. +..+++|++|++++|... .++. +..+++|+.|++++|... .+++ ++.+++|
T Consensus       102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L  175 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKL  175 (308)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTC
T ss_pred             hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCC
Confidence            57788999999999887 445554 677889999999998754 4443 778899999999998654 4555 7888999


Q ss_pred             ceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc
Q 045938          544 HRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS  608 (681)
Q Consensus       544 ~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~  608 (681)
                      ++|++++|..     +..+++|++|++++|  .+..++. .       ..+++|+.|+++++ .+...|.
T Consensus       176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N--~l~~~~~-l-------~~l~~L~~L~l~~N-~i~~~~~  234 (308)
T 1h6u_A          176 TTLKADDNKISDISPLASLPNLIEVHLKNN--QISDVSP-L-------ANTSNLFIVTLTNQ-TITNQPV  234 (308)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECTTS--CCCBCGG-G-------TTCTTCCEEEEEEE-EEECCCE
T ss_pred             CEEECCCCccCcChhhcCCCCCCEEEccCC--ccCcccc-c-------cCCCCCCEEEccCC-eeecCCe
Confidence            9999999887     457889999999997  5666553 2       46788999999986 5666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=5.1e-14  Score=137.87  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=119.2

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecC-CCCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~  497 (681)
                      +|++++.|++++|...+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|... .++ ..+..+++|++
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDK  111 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCE
Confidence            4456999999999877766677889999999999999988877777888999999999988754 444 45567889999


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC  568 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~  568 (681)
                      |++++|......+..+..+++|++|++++|...+..+..++.+++|++|++++|..       +..+++|+.|++++|
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            99999875544444567899999999999976655554688888899999988876       346778888888886

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.53  E-value=2.8e-15  Score=153.98  Aligned_cols=233  Identities=14%  Similarity=0.126  Sum_probs=149.6

Q ss_pred             CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCcee--ec-CCCCCCCceEEEEecCCCCCccccccccCCCCccc
Q 045938          265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVS--FP-EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLE  341 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  341 (681)
                      +++++|+++++...+. +..+..+++|++|++++|. +..  ++ ....+++|++|++++|..-...+..+  ..+++|+
T Consensus        70 ~~l~~L~l~~n~l~~~-~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~  145 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLV  145 (336)
T ss_dssp             TTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCS
T ss_pred             ccceEEEcCCcccccc-chhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCC
Confidence            6788888888776433 3346678889999998876 432  22 23457888888888886333344444  5688888


Q ss_pred             eeeeccCCCccc--cccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCC
Q 045938          342 ILEIWICNSLTY--IAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNL  419 (681)
Q Consensus       342 ~L~l~~c~~l~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  419 (681)
                      +|++++|..+++  ++..                       ...+++|++|++++|..++..        +++.. +..+
T Consensus       146 ~L~L~~~~~l~~~~l~~~-----------------------~~~~~~L~~L~l~~~~~l~~~--------~~~~~-~~~l  193 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTL-----------------------LSSCSRLDELNLSWCFDFTEK--------HVQVA-VAHV  193 (336)
T ss_dssp             EEECTTCBSCCHHHHHHH-----------------------HHHCTTCCEEECCCCTTCCHH--------HHHHH-HHHS
T ss_pred             EEECCCCCCCCHHHHHHH-----------------------HhcCCCCCEEcCCCCCCcChH--------HHHHH-HHhc
Confidence            888888765553  2110                       011235888888887555541        11111 3445


Q ss_pred             CCCCcEEEEcCCC--Cc-hhHHHhcccCCCccEEEeeccc-CcccccCcCcCcccccEEeeccCCCceec-CCCCCCCCC
Q 045938          420 PPSLKSLDVWSCS--EL-ESIAERLDNNTSLETISISECE-NLKILPSGLHNLRQLQEIGIWECENLVSF-PQGGLPCAK  494 (681)
Q Consensus       420 p~~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~ls~~~-~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~  494 (681)
                      |.+|++|++++|.  .. ..++..+..+++|++|++++|. +.+..+..+.++++|++|++++|..+... ...+..+++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            6248888888883  33 4456667788888999988888 55556667778888888888888633211 113456788


Q ss_pred             cceEeeccccccccccc-cCccc-CCcceeeecccCCCCCccccCC
Q 045938          495 LTRLEISYCKRLQVLPK-GLHNL-TSLQQLTIGEGGELPSLEEDDG  538 (681)
Q Consensus       495 L~~L~l~~~~~l~~~~~-~l~~l-~~L~~L~l~~~~~~~~~~~~~~  538 (681)
                      |++|++++|     ++. .+..+ .+++.|++++|...+..|+.++
T Consensus       274 L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          274 LKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence            888888887     222 23333 3467777887777766666444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=6.4e-14  Score=137.19  Aligned_cols=174  Identities=16%  Similarity=0.112  Sum_probs=107.4

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      .++++++++. ...+|..+.  +++++|++++|.+.+..+..++++++|++|++++|......+..+..+++|++|++++
T Consensus        16 ~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            5667777664 334444333  5788888888888777777777888888888888764433344456777888888888


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL  582 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~  582 (681)
                      |......+..+..+++|++|++++|......+..++.+++|++|++++|.                   +..++...+  
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------------l~~~~~~~~--  151 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-------------------LQSIPAGAF--  151 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------------------CCCCCTTTT--
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-------------------CCccCHHHc--
Confidence            77554444566777888888888876554433334555555555555443                   333333211  


Q ss_pred             ccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCC
Q 045938          583 RTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCP  625 (681)
Q Consensus       583 ~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~  625 (681)
                          ..+++|+.|+++++ .+..++. .+..+++|+.|++++|+
T Consensus       152 ----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          152 ----DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ----TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ----CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence                23344555555553 4444544 45566777777777764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.50  E-value=2.3e-15  Score=157.76  Aligned_cols=227  Identities=15%  Similarity=0.119  Sum_probs=135.2

Q ss_pred             CCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCC---chhHH-------HhcccCCCccEEEe
Q 045938          383 TSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSE---LESIA-------ERLDNNTSLETISI  452 (681)
Q Consensus       383 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~---~~~~~-------~~l~~l~~L~~L~l  452 (681)
                      .+++|++|+++++ .++...     +..+.. .+..++. |++|++++|..   .+.+|       ..+..+++|++|++
T Consensus        30 ~~~~L~~L~L~~n-~i~~~~-----~~~l~~-~l~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           30 EDDSVKEIVLSGN-TIGTEA-----ARWLSE-NIASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HCSCCCEEECTTS-EECHHH-----HHHHHH-TTTTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             cCCCccEEECCCC-CCCHHH-----HHHHHH-HHHhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            3556888888775 233210     001111 0334554 88888887632   22223       23467788888888


Q ss_pred             ecccCcc----cccCcCcCcccccEEeeccCCCcee----cCCCCCCC---------CCcceEeecccccc-cccc---c
Q 045938          453 SECENLK----ILPSGLHNLRQLQEIGIWECENLVS----FPQGGLPC---------AKLTRLEISYCKRL-QVLP---K  511 (681)
Q Consensus       453 s~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~----l~~~~~~~---------~~L~~L~l~~~~~l-~~~~---~  511 (681)
                      ++|.+..    .++..+.++++|++|++++|.....    ++..+..+         ++|++|++++|... ..++   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            8887765    3566667778888888888764211    22112222         67888888887754 2333   3


Q ss_pred             cCcccCCcceeeecccCCCC-----CccccCCCCCCCceeeeecCcc-----------cccCCcccEEEEeccCCCCcCC
Q 045938          512 GLHNLTSLQQLTIGEGGELP-----SLEEDDGLPTNLHRLEIIDNKK-----------IWKFSSLRQLTISGCDDDMVSF  575 (681)
Q Consensus       512 ~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~-----------~~~l~~L~~L~l~~~~~~~~~l  575 (681)
                      .+..+++|++|++++|....     ..+..+..+++|++|++++|.+           +..+++|++|++++|  .+...
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~~  259 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSAR  259 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCchh
Confidence            45567788888888886542     2332566778888888888876           346777888888876  23221


Q ss_pred             -----CccccccccCCCcccccceeEecccCCccc-----ccccc-cCCCCCCEEeecCCC
Q 045938          576 -----PPEDIRLRTTLPLPACLASLMIGNFPNLER-----LSSSI-VDLQNLTHLELEDCP  625 (681)
Q Consensus       576 -----~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~-----l~~~~-~~~~~L~~L~l~~c~  625 (681)
                           +...     .....++|++|+++++ .+..     ++..+ .++++|++|++++|+
T Consensus       260 ~~~~l~~~l-----~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          260 GAAAVVDAF-----SKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHH-----HTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hHHHHHHHH-----hhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence                 1110     0012566777777775 4554     66555 456777777777763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=3e-15  Score=156.90  Aligned_cols=108  Identities=14%  Similarity=0.110  Sum_probs=49.8

Q ss_pred             CcEEEEcCCCCc-hhHH---HhcccCCCccEEEeecccCcc-----cccCcCcCcccccEEeeccCCCc----eecCCCC
Q 045938          423 LKSLDVWSCSEL-ESIA---ERLDNNTSLETISISECENLK-----ILPSGLHNLRQLQEIGIWECENL----VSFPQGG  489 (681)
Q Consensus       423 L~~L~l~~~~~~-~~~~---~~l~~l~~L~~L~ls~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l----~~l~~~~  489 (681)
                      |++|++++|... ..++   ..+..+++|++|++++|.+..     ..+..+.++++|+.|++++|...    ..++..+
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l  240 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  240 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence            555555555443 1222   234455555555555555442     12224445555555555555431    2233334


Q ss_pred             CCCCCcceEeecccccccc----ccccC--cccCCcceeeecccCCC
Q 045938          490 LPCAKLTRLEISYCKRLQV----LPKGL--HNLTSLQQLTIGEGGEL  530 (681)
Q Consensus       490 ~~~~~L~~L~l~~~~~l~~----~~~~l--~~l~~L~~L~l~~~~~~  530 (681)
                      ..+++|++|++++|.....    ++..+  +.+++|+.|++++|...
T Consensus       241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            4445555555555543322    23333  22455555555555433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.47  E-value=1.7e-15  Score=157.17  Aligned_cols=204  Identities=11%  Similarity=-0.003  Sum_probs=107.2

Q ss_pred             cCCCCCCCcEEEEcCCCCchhHHHhcccC-----CCccEEEeecccCcccccCcC----cCc-ccccEEeeccCCCceec
Q 045938          416 VGNLPPSLKSLDVWSCSELESIAERLDNN-----TSLETISISECENLKILPSGL----HNL-RQLQEIGIWECENLVSF  485 (681)
Q Consensus       416 ~~~~p~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~ls~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~l~~l  485 (681)
                      +..+|.+|++|++++|...+..+..+..+     ++|++|++++|.+.+..+..+    ..+ ++|++|++++|.. +..
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~  124 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK  124 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence            34455347777777776555444444443     777777777777665443322    223 6777777777663 222


Q ss_pred             CC-----CCCC-CCCcceEeeccccccc----cccccCcccC-CcceeeecccCCCCCccc----cCCCC-CCCceeeee
Q 045938          486 PQ-----GGLP-CAKLTRLEISYCKRLQ----VLPKGLHNLT-SLQQLTIGEGGELPSLEE----DDGLP-TNLHRLEII  549 (681)
Q Consensus       486 ~~-----~~~~-~~~L~~L~l~~~~~l~----~~~~~l~~l~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~  549 (681)
                      +.     .+.. +++|++|++++|....    .++..+..++ +|++|++++|......+.    .+..+ ++|++|+++
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            11     1112 2467777777776542    2233333444 777777777765443322    12333 467777777


Q ss_pred             cCcccc-----------c-CCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccC-------Ccccccccc
Q 045938          550 DNKKIW-----------K-FSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFP-------NLERLSSSI  610 (681)
Q Consensus       550 ~~~~~~-----------~-l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~-------~l~~l~~~~  610 (681)
                      +|.+-.           . .++|++|++++|  .+...+....  .......++|+.|+++++.       .+..++..+
T Consensus       205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~l--~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~  280 (362)
T 3goz_A          205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLN--CLHGPSLENL--KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF  280 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHHSCTTCCEEECCSS--CCCCCCHHHH--HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred             CCCCChhHHHHHHHHHhcCCCCceEEECcCC--CCCcHHHHHH--HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence            776511           2 346777777776  3333322110  1111334556666666652       122333445


Q ss_pred             cCCCCCCEEeecCC
Q 045938          611 VDLQNLTHLELEDC  624 (681)
Q Consensus       611 ~~~~~L~~L~l~~c  624 (681)
                      ..+++|+.|++++|
T Consensus       281 ~~l~~L~~LdL~~N  294 (362)
T 3goz_A          281 PNIQKIILVDKNGK  294 (362)
T ss_dssp             TTCCEEEEECTTSC
T ss_pred             ccCCceEEEecCCC
Confidence            55666666666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.46  E-value=1.6e-13  Score=137.37  Aligned_cols=169  Identities=17%  Similarity=0.183  Sum_probs=98.1

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |++|++++|.... + +.+..+++|++|++++|.+.+..+  +.++++|+.|++++|. +..++. +..+++|++|++++
T Consensus        48 L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           48 IDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEH  121 (291)
T ss_dssp             CCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTT
T ss_pred             ccEEEccCCCccc-C-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCC
Confidence            6777777664432 2 235666667777776666655333  5566666666666665 333432 45556666666666


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL  582 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~  582 (681)
                      |... .+ ..+..+++|+.|++++|...+.  +.++                 .+++|++|++++|  .+..++. .   
T Consensus       122 n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~-----------------~l~~L~~L~L~~N--~l~~~~~-l---  174 (291)
T 1h6t_A          122 NGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLS-----------------RLTKLDTLSLEDN--QISDIVP-L---  174 (291)
T ss_dssp             SCCC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGG-----------------GCTTCSEEECCSS--CCCCCGG-G---
T ss_pred             CcCC-CC-hhhcCCCCCCEEEccCCcCCcc--hhhc-----------------cCCCCCEEEccCC--ccccchh-h---
Confidence            6532 23 2355566666666666653322  2233                 4555555555554  3444333 1   


Q ss_pred             ccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938          583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP  631 (681)
Q Consensus       583 ~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~  631 (681)
                          ..+++|+.|+++++ .+..++. +..+++|+.|++++| .+...|
T Consensus       175 ----~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n-~i~~~~  216 (291)
T 1h6t_A          175 ----AGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ-ECLNKP  216 (291)
T ss_dssp             ----TTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE-EEECCC
T ss_pred             ----cCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCC-cccCCc
Confidence                35566777777764 6666654 778899999999997 344443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.46  E-value=2.3e-13  Score=129.00  Aligned_cols=149  Identities=16%  Similarity=0.062  Sum_probs=118.2

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  497 (681)
                      +++++++|++++|...+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.. ..++. .+..+++|++
T Consensus        26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred             CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCE
Confidence            344699999999977655555678999999999999988876666678899999999999874 45554 3567899999


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEecc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGC  568 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~  568 (681)
                      |++++|......+..+..+++|+.|++++|...+..+..+..+++|++|++++|.....+++|+.|++..|
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN  175 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHH
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHH
Confidence            99999986544444578899999999999986655555578888899999998887777778887777765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.46  E-value=3.2e-13  Score=126.81  Aligned_cols=141  Identities=14%  Similarity=0.148  Sum_probs=92.3

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |++|++++|.+. .++ .+..+++|++|++++|....  +..+..+++|++|++++|......+..+..+++|++|++++
T Consensus        46 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           46 LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             CCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             ccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            777777776544 344 46677777777777774432  23566677777777777764444555666777777777777


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEecc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGC  568 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~  568 (681)
                      |......+..++.+++|++|++++|..++.++. ++.+++|++|++++|..     +..+++|++|++++|
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-GGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccHh-hcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCc
Confidence            776555566667777777777777765555553 66666666666666654     335666666666665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.45  E-value=1e-14  Score=151.17  Aligned_cols=224  Identities=13%  Similarity=0.033  Sum_probs=156.9

Q ss_pred             cCCCCCCCcEEEEcCCCCchhHH----HhcccCC-CccEEEeecccCcccccCcCcCc-----ccccEEeeccCCCceec
Q 045938          416 VGNLPPSLKSLDVWSCSELESIA----ERLDNNT-SLETISISECENLKILPSGLHNL-----RQLQEIGIWECENLVSF  485 (681)
Q Consensus       416 ~~~~p~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~ls~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~l~~l  485 (681)
                      +...+++|++|++++|...+..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|......
T Consensus        17 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            44556679999999998665544    6678888 99999999999887655555554     89999999999843222


Q ss_pred             CC----CCCCC-CCcceEeeccccccccccccC----cc-cCCcceeeecccCCCCC----ccccCCCCC-CCceeeeec
Q 045938          486 PQ----GGLPC-AKLTRLEISYCKRLQVLPKGL----HN-LTSLQQLTIGEGGELPS----LEEDDGLPT-NLHRLEIID  550 (681)
Q Consensus       486 ~~----~~~~~-~~L~~L~l~~~~~l~~~~~~l----~~-l~~L~~L~l~~~~~~~~----~~~~~~~~~-~L~~L~l~~  550 (681)
                      +.    .+..+ ++|++|++++|......+..+    .. .++|++|++++|.....    ++..+..++ +|++|++++
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence            21    12333 689999999998654443332    33 36999999999976543    233344444 999999999


Q ss_pred             Ccc-----------cccC-CcccEEEEeccCCCCcC-----CCccccccccCCCcccccceeEecccCCccccc-----c
Q 045938          551 NKK-----------IWKF-SSLRQLTISGCDDDMVS-----FPPEDIRLRTTLPLPACLASLMIGNFPNLERLS-----S  608 (681)
Q Consensus       551 ~~~-----------~~~l-~~L~~L~l~~~~~~~~~-----l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~-----~  608 (681)
                      |.+           +..+ ++|++|++++|  .+..     ++....      ...++|++|+++++ .+...+     .
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~N-~l~~~~~~~l~~  247 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCLN-CLHGPSLENLKL  247 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCSS-CCCCCCHHHHHH
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcCC-CCCcHHHHHHHH
Confidence            987           1244 59999999998  4444     222221      12458999999996 565543     3


Q ss_pred             cccCCCCCCEEeecCCC---C----CcccCC-CCCcccccEEEeCCch
Q 045938          609 SIVDLQNLTHLELEDCP---K----LKYFPE-KGLPSSLLQLYIGGCP  648 (681)
Q Consensus       609 ~~~~~~~L~~L~l~~c~---~----l~~l~~-~~~~~~L~~L~i~~c~  648 (681)
                      .+..+++|++|++++|.   .    ++.++. ...+++|++|++++|+
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            45778999999999984   0    222222 2346789999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.45  E-value=2.3e-13  Score=127.81  Aligned_cols=107  Identities=18%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             ccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcce
Q 045938          442 DNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQ  521 (681)
Q Consensus       442 ~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~  521 (681)
                      ..+++|++|++++|.+. .++ .+..+++|++|++++|. +..++ .+..+++|++|++++|......+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            55678888888888776 334 57778888888888874 44443 4566778888888887766556677777888888


Q ss_pred             eeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938          522 LTIGEGGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       522 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      |++++|...+..+..++.+++|++|++++|.
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            8888877665555555555555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.41  E-value=9.3e-13  Score=131.73  Aligned_cols=161  Identities=16%  Similarity=0.171  Sum_probs=121.7

Q ss_pred             CCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccC
Q 045938          384 SSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPS  463 (681)
Q Consensus       384 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~  463 (681)
                      .++|++|+++++ .++.+ +     +      +..++. |++|++++|...+.. . +..+++|++|++++|.+.+  ..
T Consensus        45 l~~L~~L~l~~~-~i~~~-~-----~------~~~l~~-L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~--~~  106 (291)
T 1h6t_A           45 LNSIDQIIANNS-DIKSV-Q-----G------IQYLPN-VTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD--LS  106 (291)
T ss_dssp             HHTCCEEECTTS-CCCCC-T-----T------GGGCTT-CCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC--GG
T ss_pred             cCcccEEEccCC-CcccC-h-----h------HhcCCC-CCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC--Ch
Confidence            458999999885 34431 1     1      445555 999999999766543 3 8999999999999998876  23


Q ss_pred             cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCC
Q 045938          464 GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNL  543 (681)
Q Consensus       464 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  543 (681)
                      .+..+++|++|++++|. +..++ .+..+++|+.|++++|.... + ..+..+++|+.|++++|...+ +++ ++.+++|
T Consensus       107 ~l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L  180 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKL  180 (291)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTC
T ss_pred             hhccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc-chh-hcCCCcc
Confidence            48889999999999987 44454 46678999999999998543 4 568889999999999997554 444 7788888


Q ss_pred             ceeeeecCcc-----cccCCcccEEEEecc
Q 045938          544 HRLEIIDNKK-----IWKFSSLRQLTISGC  568 (681)
Q Consensus       544 ~~L~l~~~~~-----~~~l~~L~~L~l~~~  568 (681)
                      ++|++++|.+     +..+++|+.|++++|
T Consensus       181 ~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          181 QNLYLSKNHISDLRALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred             CEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence            8888888765     345666666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.38  E-value=3.4e-12  Score=121.90  Aligned_cols=134  Identities=13%  Similarity=0.147  Sum_probs=108.0

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~  497 (681)
                      +|.++++|++++|.+....+..+..+++|++|++++|.+....|..+.++++|++|++++|. +..++.. +..+++|++
T Consensus        30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence            44569999999987766555678889999999999999888778889999999999999887 4466654 456889999


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      |++++|......+..+..+++|+.|++++|...+..+..+..+++|++|++++|..
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            99999987666677888899999999999987666555677777888888877764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=2.6e-12  Score=139.53  Aligned_cols=166  Identities=20%  Similarity=0.199  Sum_probs=84.2

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |++|++++|.+. .+|   ..+++|++|++++|.+.+ +|. +.+  +|+.|++++|. +..+|.   .+++|+.|++++
T Consensus        82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADN  149 (571)
T ss_dssp             CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCS
T ss_pred             CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCC
Confidence            555555555433 333   334555555555554443 333 332  55555555544 223443   344555555555


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL  582 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~  582 (681)
                      |.. ..+|.   .+++|+.|++++|...+ +|. ++                   ++|+.|++++|  .+..+|. ... 
T Consensus       150 N~l-~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------~~L~~L~Ls~N--~L~~lp~-~~~-  200 (571)
T 3cvr_A          150 NQL-TMLPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------ESLEALDVSTN--LLESLPA-VPV-  200 (571)
T ss_dssp             SCC-SCCCC---CCTTCCEEECCSSCCSC-CCC-CC-------------------TTCCEEECCSS--CCSSCCC-CC--
T ss_pred             Ccc-CcCCC---cCCCcCEEECCCCCCCC-cch-hh-------------------CCCCEEECcCC--CCCchhh-HHH-
Confidence            542 22333   33455555555554322 333 22                   45555555555  4445554 210 


Q ss_pred             ccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938          583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP  631 (681)
Q Consensus       583 ~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~  631 (681)
                       ......+.|+.|+++++ .++.+|..+..+++|+.|++++|+....+|
T Consensus       201 -~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          201 -RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             --------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             -hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence             00011223388888875 778888877778888888888886544444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=4.7e-12  Score=137.52  Aligned_cols=174  Identities=21%  Similarity=0.269  Sum_probs=114.4

Q ss_pred             CccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeec
Q 045938          446 SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIG  525 (681)
Q Consensus       446 ~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~  525 (681)
                      ++++|++++|.+.+ +|..+  +++|++|++++|. +..+|   ..+++|+.|++++|... .+|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECC
Confidence            56666666665544 44433  2566666666655 33455   23456666666666533 3555 333  66666666


Q ss_pred             ccCCCCCccccCCCCCCCceeeeecCcccc---cCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCC
Q 045938          526 EGGELPSLEEDDGLPTNLHRLEIIDNKKIW---KFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPN  602 (681)
Q Consensus       526 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~  602 (681)
                      +|...+ +|.   .+++|++|++++|.+-.   .+++|++|++++|  .+..+|. .       .  ++|+.|+++++ .
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N--~L~~lp~-l-------~--~~L~~L~Ls~N-~  191 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNN--QLTFLPE-L-------P--ESLEALDVSTN-L  191 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS--CCSCCCC-C-------C--TTCCEEECCSS-C
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCC--CCCCcch-h-------h--CCCCEEECcCC-C
Confidence            665433 443   45666666666666411   4568888888887  5666776 3       2  89999999996 8


Q ss_pred             cccccccccCCCCC-------CEEeecCCCCCcccCCC-CCcccccEEEeCCchhHH
Q 045938          603 LERLSSSIVDLQNL-------THLELEDCPKLKYFPEK-GLPSSLLQLYIGGCPLIA  651 (681)
Q Consensus       603 l~~l~~~~~~~~~L-------~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~  651 (681)
                      ++.+|. +..  +|       +.|++++| .++.+|.. ..+++|++|++++|+.-.
T Consensus       192 L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          192 LESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             CCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            889988 554  77       99999998 78889873 448999999999997543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.37  E-value=3.4e-12  Score=120.91  Aligned_cols=109  Identities=12%  Similarity=0.060  Sum_probs=50.5

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~  501 (681)
                      |++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|... .++. .+..+++|+.|+++
T Consensus        78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECC
T ss_pred             cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEec
Confidence            444444444333222223444555555555555544433434445555555555554422 2332 23445555555555


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCC
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGL  539 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  539 (681)
                      +|...       +.+++|+.|+++.|...+.+|..++.
T Consensus       157 ~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          157 DNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             SCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CCCee-------cCCCCHHHHHHHHHhCCceeeccCcc
Confidence            55321       23345555555555555555544443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.35  E-value=6e-12  Score=121.06  Aligned_cols=133  Identities=16%  Similarity=0.132  Sum_probs=106.7

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~  497 (681)
                      +|++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|+.|++++|. +..++. .+..+++|++
T Consensus        38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence            44569999999998777667788899999999999999876666667889999999999887 445554 3567889999


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      |++++|.. ..+|..+..+++|+.|++++|......+..+..+++|++|++++|..
T Consensus       117 L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          117 LFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             EECCSSCC-CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             EeccCCcc-cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            99999884 57888888999999999999976654445577777888888877765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.35  E-value=3.9e-12  Score=121.45  Aligned_cols=135  Identities=13%  Similarity=0.005  Sum_probs=103.3

Q ss_pred             CCCCCcEEEEcCCCCchhHH-HhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIA-ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  497 (681)
                      +|..+++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++
T Consensus        30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT  109 (220)
T ss_dssp             CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred             CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence            34458889999887655433 34778889999999998888777777888889999999888754333334667888999


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      |++++|......|..+..+++|+.|++++|...+..|..+..+++|++|++++|..
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            99998887666677788888899999988887766677777777777777777764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.35  E-value=3.3e-12  Score=140.32  Aligned_cols=170  Identities=18%  Similarity=0.191  Sum_probs=135.7

Q ss_pred             cccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcc
Q 045938          441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ  520 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~  520 (681)
                      +..+++|+.|++++|.+... + .+..+++|+.|++++|.. ..++. +..+++|+.|++++|.. ..++ .+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCC
Confidence            46788999999999987653 3 588899999999999874 44554 77889999999999974 4454 688999999


Q ss_pred             eeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCccccccee
Q 045938          521 QLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASL  595 (681)
Q Consensus       521 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l  595 (681)
                      .|++++|.... ++. +..+++|+.|+|++|.+     +..+++|+.|+|++|  .+..++. .       ..+++|+.|
T Consensus       113 ~L~Ls~N~l~~-l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N--~l~~~~~-l-------~~l~~L~~L  180 (605)
T 1m9s_A          113 SLSLEHNGISD-ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN--QISDIVP-L-------AGLTKLQNL  180 (605)
T ss_dssp             EEECTTSCCCC-CGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSS--CCCCCGG-G-------TTCTTCCEE
T ss_pred             EEEecCCCCCC-Ccc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCC--cCCCchh-h-------ccCCCCCEE
Confidence            99999998554 444 88899999999999987     558899999999997  5555554 2       467889999


Q ss_pred             EecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938          596 MIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP  631 (681)
Q Consensus       596 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~  631 (681)
                      +++++ .+..++ .+..+++|+.|++++|+ +...|
T Consensus       181 ~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p  213 (605)
T 1m9s_A          181 YLSKN-HISDLR-ALAGLKNLDVLELFSQE-CLNKP  213 (605)
T ss_dssp             ECCSS-CCCBCG-GGTTCTTCSEEECCSEE-EECCC
T ss_pred             ECcCC-CCCCCh-HHccCCCCCEEEccCCc-CcCCc
Confidence            99986 777775 57889999999999974 44443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.34  E-value=3.7e-12  Score=139.91  Aligned_cols=54  Identities=19%  Similarity=0.276  Sum_probs=32.7

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCC
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECE  480 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~  480 (681)
                      |+.|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|+
T Consensus       155 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          155 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEE
T ss_pred             CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCc
Confidence            6666666665544333  66666666666666665542  245566666666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.32  E-value=8.2e-12  Score=119.22  Aligned_cols=141  Identities=19%  Similarity=0.152  Sum_probs=111.2

Q ss_pred             cEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccc
Q 045938          424 KSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYC  503 (681)
Q Consensus       424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  503 (681)
                      +.++.+++. +..+|..+.  +++++|++++|.+....+..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            456666653 344554333  68999999999998877778899999999999998865555777888999999999999


Q ss_pred             cccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938          504 KRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC  568 (681)
Q Consensus       504 ~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~  568 (681)
                      ... .+|. .+..+++|+.|++++|......+..+..+++|++|++++|.+       +..+++|+.|++++|
T Consensus        91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            855 4554 467899999999999987777677788888999999988876       336777888888876

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.31  E-value=1.6e-12  Score=127.94  Aligned_cols=168  Identities=14%  Similarity=0.109  Sum_probs=99.7

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      +..++++++...+ ++ .+..+++|++|++++|.+.. ++ .+..+++|+.|++++|. +..++. +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCC
Confidence            5555666654332 22 45667777777777776553 33 56667777777777765 344444 56667777777777


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL  582 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~  582 (681)
                      |.. ..++....  ++|+.|++++|...+ ++. ++.+++|++|++++|+                   +..++. .   
T Consensus        95 N~l-~~l~~~~~--~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~Ls~N~-------------------i~~~~~-l---  146 (263)
T 1xeu_A           95 NRL-KNLNGIPS--ACLSRLFLDNNELRD-TDS-LIHLKNLEILSIRNNK-------------------LKSIVM-L---  146 (263)
T ss_dssp             SCC-SCCTTCCC--SSCCEEECCSSCCSB-SGG-GTTCTTCCEEECTTSC-------------------CCBCGG-G---
T ss_pred             Ccc-CCcCcccc--CcccEEEccCCccCC-Chh-hcCcccccEEECCCCc-------------------CCCChH-H---
Confidence            763 33443222  677777777775433 332 5555555555555544                   333321 1   


Q ss_pred             ccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccC
Q 045938          583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFP  631 (681)
Q Consensus       583 ~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~  631 (681)
                          ..+++|+.|+++++ .+..+ ..+..+++|+.|++++|+ +...|
T Consensus       147 ----~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~-~~~~~  188 (263)
T 1xeu_A          147 ----GFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK-CVNEP  188 (263)
T ss_dssp             ----GGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred             ----ccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc-ccCCc
Confidence                24455666666664 55555 457788999999999974 44444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.31  E-value=8e-12  Score=129.23  Aligned_cols=150  Identities=16%  Similarity=0.056  Sum_probs=115.3

Q ss_pred             CCCCCCcEEEEcCCCCchhHHHhcc-cCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCc
Q 045938          418 NLPPSLKSLDVWSCSELESIAERLD-NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKL  495 (681)
Q Consensus       418 ~~p~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L  495 (681)
                      .+|..++.|++++|.+.+..+..+. .+++|++|++++|.+....+..+.++++|++|++++|.. ..++. .+..+++|
T Consensus        36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L  114 (361)
T 2xot_A           36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQAL  114 (361)
T ss_dssp             SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTC
T ss_pred             cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCC
Confidence            3455689999999877665555566 899999999999998887777888999999999999884 45544 56778899


Q ss_pred             ceEeeccccccccccccCcccCCcceeeecccCCCCCccccC---CCCCCCceeeeecCcc-------cccCCc--ccEE
Q 045938          496 TRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDD---GLPTNLHRLEIIDNKK-------IWKFSS--LRQL  563 (681)
Q Consensus       496 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~-------~~~l~~--L~~L  563 (681)
                      ++|++++|......+..+..+++|+.|++++|......+..+   ..+++|+.|++++|++       +..++.  ++.|
T Consensus       115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL  194 (361)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTE
T ss_pred             CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceE
Confidence            999999998766667788899999999999987554333333   5688899999998876       224555  4778


Q ss_pred             EEecc
Q 045938          564 TISGC  568 (681)
Q Consensus       564 ~l~~~  568 (681)
                      ++.+|
T Consensus       195 ~l~~N  199 (361)
T 2xot_A          195 YLHNN  199 (361)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            88886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.31  E-value=1.8e-11  Score=117.71  Aligned_cols=46  Identities=39%  Similarity=0.538  Sum_probs=23.0

Q ss_pred             CcccccccccCCCCCCEEeecCCCCCcccCCC--CCcccccEEEeCCch
Q 045938          602 NLERLSSSIVDLQNLTHLELEDCPKLKYFPEK--GLPSSLLQLYIGGCP  648 (681)
Q Consensus       602 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~  648 (681)
                      ++..+|..+..+++|++|++++| .++.++..  ..+++|++|++++||
T Consensus       123 ~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          123 KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence            34444444455555555555554 44444432  224555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.27  E-value=2.1e-11  Score=116.41  Aligned_cols=143  Identities=14%  Similarity=0.051  Sum_probs=111.9

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccccc-CcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILP-SGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      -+.++++++.. +.+|..+  .+.+++|++++|.+....+ ..+..+++|+.|++++|......+..+..+++|++|+++
T Consensus        13 ~~~l~~s~n~l-~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKL-NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCC-SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCc-ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            45778887754 4455443  3467899999999887644 457889999999999988443333467889999999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC  568 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~  568 (681)
                      +|......+..+..+++|++|++++|...+..+..+..+++|++|++++|.+       +..+++|++|++++|
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            9987666666788999999999999997777777788889999999998876       346778888888886

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=3.9e-11  Score=122.39  Aligned_cols=123  Identities=14%  Similarity=0.048  Sum_probs=88.9

Q ss_pred             CCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcc-eE
Q 045938          421 PSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLT-RL  498 (681)
Q Consensus       421 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L  498 (681)
                      .+++.+.+.+.-...........+++|+.+++++|.+.......|.++++|+.+++.++  +..++. .+..|++|+ .+
T Consensus       202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred             cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence            34778888776433333222234889999999998887776777888999999999876  566665 456788898 99


Q ss_pred             eeccccccccc-cccCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938          499 EISYCKRLQVL-PKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE  547 (681)
Q Consensus       499 ~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  547 (681)
                      ++.+ . +..+ +..+..|++|+.+++.++.....-+..|..+++|+.+.
T Consensus       280 ~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          280 ELPA-S-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECT-T-CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEcc-c-ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            9988 3 4444 45778899999999887765544455677777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.25  E-value=5.1e-12  Score=115.23  Aligned_cols=109  Identities=19%  Similarity=0.207  Sum_probs=59.6

Q ss_pred             CCCCCcEEEEcCCCCc-hhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSEL-ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  497 (681)
                      .|+++++|++++|... +.+|..+..+++|++|++++|.+...  ..+..+++|++|++++|.....++..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3344777777766554 34555556666666666666665443  44555666666666665533323333333556666


Q ss_pred             Eeecccccccccc--ccCcccCCcceeeecccCCC
Q 045938          498 LEISYCKRLQVLP--KGLHNLTSLQQLTIGEGGEL  530 (681)
Q Consensus       498 L~l~~~~~l~~~~--~~l~~l~~L~~L~l~~~~~~  530 (681)
                      |++++|.. ..++  ..+..+++|+.|++++|...
T Consensus       100 L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          100 LNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             EECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             EeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            66666553 3322  34555566666666665433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.25  E-value=2e-11  Score=126.25  Aligned_cols=167  Identities=15%  Similarity=0.100  Sum_probs=126.4

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCc-CcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLH-NLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      -+.++++++. +..+|..+.  +.++.|++++|.+....+..+. ++++|+.|++++|......+..+..+++|++|+++
T Consensus        20 ~~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3567777664 344554333  4689999999999887777776 89999999999988543334467889999999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------c---ccCCcccEEEEeccCCC
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------I---WKFSSLRQLTISGCDDD  571 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~---~~l~~L~~L~l~~~~~~  571 (681)
                      +|......+..+..+++|+.|++++|......+..+..+++|++|++++|.+       +   ..+++|+.|+|++|  .
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N--~  174 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN--K  174 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS--C
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC--C
Confidence            9986554455788999999999999987766677789999999999999987       1   35899999999998  6


Q ss_pred             CcCCCccccccccCCCcccc--cceeEeccc
Q 045938          572 MVSFPPEDIRLRTTLPLPAC--LASLMIGNF  600 (681)
Q Consensus       572 ~~~l~~~~~~~~~~~~~~~~--L~~l~l~~~  600 (681)
                      +..+|...+      ..++.  ++.|++.++
T Consensus       175 l~~l~~~~~------~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          175 LKKLPLTDL------QKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CCCCCHHHH------HHSCHHHHTTEECCSS
T ss_pred             CCccCHHHh------hhccHhhcceEEecCC
Confidence            777775432      12232  466777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=3.1e-13  Score=147.59  Aligned_cols=188  Identities=15%  Similarity=0.102  Sum_probs=118.2

Q ss_pred             CCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeeccc-------------CcccccCcCcCcccccEEe-eccCCC-
Q 045938          417 GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECE-------------NLKILPSGLHNLRQLQEIG-IWECEN-  481 (681)
Q Consensus       417 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~-  481 (681)
                      ...++ |+.|++++|. ++.+|..++++++|+.|++++|.             ..+..|..++++++|+.|+ ++.+.. 
T Consensus       346 ~~~~~-L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQ-LFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTT-SSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCcc-ceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34444 9999999885 56789999999999999987665             3444566667777888777 443210 


Q ss_pred             -----------ceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeec
Q 045938          482 -----------LVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIID  550 (681)
Q Consensus       482 -----------l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  550 (681)
                                 +..++.     ..|+.|++++|.. ..+|. ++.+++|+.|++++|... .+|..++.+++|++|++++
T Consensus       424 ~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred             hhhhhhhhcccccccCc-----cCceEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence                       111111     2466677777653 34554 666677777777776544 5555555555555555544


Q ss_pred             CcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccc--cccccCCCCCCEEeecCCCCCc
Q 045938          551 NKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERL--SSSIVDLQNLTHLELEDCPKLK  628 (681)
Q Consensus       551 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~  628 (681)
                      |.                   +..+| ..       ..+++|+.|+++++ .+..+  |..+..+++|+.|++++| .+.
T Consensus       496 N~-------------------l~~lp-~l-------~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N-~l~  546 (567)
T 1dce_A          496 NA-------------------LENVD-GV-------ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGN-SLC  546 (567)
T ss_dssp             SC-------------------CCCCG-GG-------TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTS-GGG
T ss_pred             CC-------------------CCCCc-cc-------CCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCC-cCC
Confidence            43                   33444 22       35566666666664 66666  677788888888888887 466


Q ss_pred             ccCCCC-----CcccccEEE
Q 045938          629 YFPEKG-----LPSSLLQLY  643 (681)
Q Consensus       629 ~l~~~~-----~~~~L~~L~  643 (681)
                      .+|+..     .+++|+.|+
T Consensus       547 ~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          547 QEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GSSSCTTHHHHHCTTCSEEE
T ss_pred             CCccHHHHHHHHCcccCccC
Confidence            655421     167777775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.23  E-value=2.5e-11  Score=110.61  Aligned_cols=126  Identities=14%  Similarity=0.104  Sum_probs=99.1

Q ss_pred             cccCCCccEEEeecccCc-ccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCc
Q 045938          441 LDNNTSLETISISECENL-KILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL  519 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L  519 (681)
                      ....++|++|++++|.+. +.+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|
T Consensus        20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   97 (168)
T 2ell_A           20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL   97 (168)
T ss_dssp             TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred             cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence            345689999999999987 5678888999999999999988 5455 667789999999999999766577777779999


Q ss_pred             ceeeecccCCCCCc-cccCCCCCCCceeeeecCcc----------cccCCcccEEEEecc
Q 045938          520 QQLTIGEGGELPSL-EEDDGLPTNLHRLEIIDNKK----------IWKFSSLRQLTISGC  568 (681)
Q Consensus       520 ~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~----------~~~l~~L~~L~l~~~  568 (681)
                      +.|++++|...+.. +..++.+++|++|++++|..          +..+++|+.|++++|
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            99999999755422 25577788888888887765          224666677766665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.23  E-value=7.5e-12  Score=123.03  Aligned_cols=140  Identities=19%  Similarity=0.227  Sum_probs=110.4

Q ss_pred             CCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcc
Q 045938          417 GNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLT  496 (681)
Q Consensus       417 ~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~  496 (681)
                      ..++. |++|++++|... .++ .+..+++|++|++++|.+.+..+  +.++++|+.|++++|. +..++....  ++|+
T Consensus        38 ~~l~~-L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~  109 (263)
T 1xeu_A           38 KELSG-VQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNLNGIPS--ACLS  109 (263)
T ss_dssp             HHHTT-CSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCCTTCCC--SSCC
T ss_pred             hhcCc-CcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCcCcccc--Cccc
Confidence            34455 999999999654 454 68899999999999998877544  8899999999999987 455665333  8999


Q ss_pred             eEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEecc
Q 045938          497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGC  568 (681)
Q Consensus       497 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~  568 (681)
                      .|++++|.. ..++ .+..+++|+.|++++|...+ ++ .++.+++|++|++++|.+     +..+++|+.|++++|
T Consensus       110 ~L~L~~N~l-~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          110 RLFLDNNEL-RDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             EEECCSSCC-SBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred             EEEccCCcc-CCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence            999999985 4454 58899999999999998544 44 377888888888888876     446677777777776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.16  E-value=5.6e-12  Score=112.39  Aligned_cols=127  Identities=18%  Similarity=0.119  Sum_probs=79.4

Q ss_pred             CCCcEEEEcCCCCc-hhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEe
Q 045938          421 PSLKSLDVWSCSEL-ESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLE  499 (681)
Q Consensus       421 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~  499 (681)
                      +++++|++++|... +.+|..+..+++|++|++++|.+.+.  ..++.+++|++|++++|.....+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34777777777665 35565667777777777777766554  5566677777777777764433554444466777777


Q ss_pred             ecccccccc-ccccCcccCCcceeeecccCCCCCcc---ccCCCCCCCceeeee
Q 045938          500 ISYCKRLQV-LPKGLHNLTSLQQLTIGEGGELPSLE---EDDGLPTNLHRLEII  549 (681)
Q Consensus       500 l~~~~~l~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  549 (681)
                      +++|..... .+..++.+++|++|++++|...+..+   ..++.+++|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777764331 22566677777777777775443322   235556666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.14  E-value=3.3e-11  Score=107.29  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=85.0

Q ss_pred             ccCCCccEEEeecccCc-ccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcc
Q 045938          442 DNNTSLETISISECENL-KILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQ  520 (681)
Q Consensus       442 ~~l~~L~~L~ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~  520 (681)
                      ...++|++|++++|.+. +.+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            45578999999999887 5778888889999999999886 4445 5677888999999999987665777777789999


Q ss_pred             eeeecccCCCCC-ccccCCCCCCCceeeeecCcc
Q 045938          521 QLTIGEGGELPS-LEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       521 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      +|++++|...+. .+..++.+++|++|++++|..
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            999999985542 225566666677777666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.11  E-value=1.9e-10  Score=107.13  Aligned_cols=107  Identities=13%  Similarity=0.070  Sum_probs=45.6

Q ss_pred             CccEEEeecccCcccccC-cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeee
Q 045938          446 SLETISISECENLKILPS-GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTI  524 (681)
Q Consensus       446 ~L~~L~ls~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l  524 (681)
                      ++++|++++|.+....+. .++++++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            344444444433332222 2344444444444444422222333444444444444444433333333444455555555


Q ss_pred             cccCCCCCccccCCCCCCCceeeeecCc
Q 045938          525 GEGGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      ++|...+..|..++.+++|++|++++|.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            5554444334444444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.08  E-value=4.8e-10  Score=114.25  Aligned_cols=166  Identities=16%  Similarity=0.173  Sum_probs=92.4

Q ss_pred             cccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCCcceeeecccCC---CCCc-cccCCC---
Q 045938          468 LRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGE---LPSL-EEDDGL---  539 (681)
Q Consensus       468 l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~---~~~~-~~~~~~---  539 (681)
                      +++|+.+++.+  .+..++. .+..|++|+++++.++......+..+..+.++..+.......   ...+ ...+..   
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            67777777765  3445554 344667777777777664433334455555554444332100   0000 000111   


Q ss_pred             -----------------------CCCCceeeeecCcc------c-ccCCcccEEEEeccCCCCcCCCccccccccCCCcc
Q 045938          540 -----------------------PTNLHRLEIIDNKK------I-WKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLP  589 (681)
Q Consensus       540 -----------------------~~~L~~L~l~~~~~------~-~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~  589 (681)
                                             +.++..+.+.+.-.      + ..+++|+++++.+|  .+..++...+      ...
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n--~i~~I~~~aF------~~~  249 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT--NATTIPDFTF------AQK  249 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB--CCCEECTTTT------TTC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC--CcceecHhhh------hCC
Confidence                                   22233333333211      0 13677888888776  5667776655      456


Q ss_pred             cccceeEecccCCcccccc-cccCCCCCC-EEeecCCCCCcccCCCCC--cccccEEEeCCc
Q 045938          590 ACLASLMIGNFPNLERLSS-SIVDLQNLT-HLELEDCPKLKYFPEKGL--PSSLLQLYIGGC  647 (681)
Q Consensus       590 ~~L~~l~l~~~~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c  647 (681)
                      .+|+++++.+  +++.|+. .|..+++|+ .+++.+  .++.++...+  +++|+.|++.++
T Consensus       250 ~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          250 KYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             TTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             CCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence            6777777776  3777765 566777787 888876  5777776544  567788777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.08  E-value=5.5e-10  Score=104.00  Aligned_cols=114  Identities=15%  Similarity=0.090  Sum_probs=96.2

Q ss_pred             CCCCCcEEEEcCCCCchhHHH-hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938          419 LPPSLKSLDVWSCSELESIAE-RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR  497 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  497 (681)
                      ++.++++|++++|.+....+. .++.+++|++|++++|.+.+..|..++++++|++|++++|......+..+..+++|++
T Consensus        27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            344699999999976554432 3889999999999999999888899999999999999999855444555778999999


Q ss_pred             EeeccccccccccccCcccCCcceeeecccCCCCC
Q 045938          498 LEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPS  532 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~  532 (681)
                      |++++|......|..+..+++|++|++++|+...+
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99999997777788899999999999999986654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.01  E-value=1e-09  Score=100.67  Aligned_cols=108  Identities=17%  Similarity=0.110  Sum_probs=55.5

Q ss_pred             CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCCcceee
Q 045938          445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLT  523 (681)
Q Consensus       445 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~  523 (681)
                      ++|++|++++|.+.+..+..++++++|++|++++|. +..++. .+..+++|++|++++|......+..+..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            455555555555544434444555666666666554 233333 234555666666666554333333345566666666


Q ss_pred             ecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          524 IGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       524 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      +++|...+..+..+..+++|++|++++|..
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            666654433233344555555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.99  E-value=1.3e-09  Score=101.42  Aligned_cols=82  Identities=15%  Similarity=0.025  Sum_probs=37.6

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      ++++|++++|.+. .+|..+..+++|++|++++|.+....+..+.++++|++|++++|......+..+..+++|+.|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4555555555432 334445555555555555555544444444445555555555444222112223334444444444


Q ss_pred             ccc
Q 045938          502 YCK  504 (681)
Q Consensus       502 ~~~  504 (681)
                      +|.
T Consensus       111 ~N~  113 (193)
T 2wfh_A          111 GND  113 (193)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.99  E-value=2e-09  Score=100.09  Aligned_cols=126  Identities=17%  Similarity=0.137  Sum_probs=99.9

Q ss_pred             cEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccc
Q 045938          424 KSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYC  503 (681)
Q Consensus       424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~  503 (681)
                      +.++++++. +..+|..+  .++|++|++++|.+. .+|..+.++++|+.|++++|......+..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSC-CSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCC-CCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            456666664 33455433  368999999999886 56678899999999999998854433446778999999999999


Q ss_pred             cccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          504 KRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       504 ~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      ......+..+..+++|+.|++++|......+..+..+++|+.|++++|..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            97666666789999999999999987655555688899999999999986

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.98  E-value=2.9e-10  Score=104.28  Aligned_cols=124  Identities=20%  Similarity=0.165  Sum_probs=72.5

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCC-CccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCC-CCCCCcceEe
Q 045938          422 SLKSLDVWSCSELESIAERLDNNT-SLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGG-LPCAKLTRLE  499 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~  499 (681)
                      +|++|++++|... .++ .+..+. +|++|++++|.+.+.  ..++.+++|++|++++|. +..++... ..+++|++|+
T Consensus        20 ~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           20 RDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             SCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEE
T ss_pred             CceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEE
Confidence            3777777777544 333 233433 777777777766653  456667777777777766 33455443 5566777777


Q ss_pred             eccccccccccc--cCcccCCcceeeecccCCCCCccc----cCCCCCCCceeeeecCc
Q 045938          500 ISYCKRLQVLPK--GLHNLTSLQQLTIGEGGELPSLEE----DDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       500 l~~~~~l~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~  552 (681)
                      +++|.. ..+|.  .+..+++|+.|++++|+.. .++.    .++.+++|+.|++++|.
T Consensus        95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            777663 44554  5666677777777776543 2332    14444555555554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.95  E-value=3.4e-09  Score=97.19  Aligned_cols=113  Identities=20%  Similarity=0.129  Sum_probs=90.8

Q ss_pred             CCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceE
Q 045938          420 PPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRL  498 (681)
Q Consensus       420 p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L  498 (681)
                      ++++++|++++|...+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.. ..++. .+..+++|++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEE
Confidence            34699999999977655455678999999999999998877667788999999999999874 45554 45678999999


Q ss_pred             eeccccccccccc-cCcccCCcceeeecccCCCCCcc
Q 045938          499 EISYCKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLE  534 (681)
Q Consensus       499 ~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~  534 (681)
                      ++++|... .+|. .+..+++|+.|++++|+.....+
T Consensus       106 ~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          106 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999855 5555 45789999999999998665443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.94  E-value=1e-09  Score=100.59  Aligned_cols=123  Identities=18%  Similarity=0.210  Sum_probs=91.3

Q ss_pred             hcccCCCccEEEeecccCcccccCcCcCc-ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccC-cccC
Q 045938          440 RLDNNTSLETISISECENLKILPSGLHNL-RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGL-HNLT  517 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l-~~l~  517 (681)
                      .+.++++|++|++++|.+.. ++. +..+ ++|+.|++++|. +..+ ..+..+++|++|++++|... .+|..+ ..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            35678899999999998874 344 4444 499999999987 4455 56788899999999999854 555544 8899


Q ss_pred             CcceeeecccCCCCCccc--cCCCCCCCceeeeecCcc----------cccCCcccEEEEecc
Q 045938          518 SLQQLTIGEGGELPSLEE--DDGLPTNLHRLEIIDNKK----------IWKFSSLRQLTISGC  568 (681)
Q Consensus       518 ~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~----------~~~l~~L~~L~l~~~  568 (681)
                      +|++|++++|.. +.++.  .++.+++|++|++++|..          ++.+++|+.|++++|
T Consensus        89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            999999999975 45554  567777777777777764          234566666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.85  E-value=2.3e-11  Score=114.05  Aligned_cols=137  Identities=16%  Similarity=0.208  Sum_probs=102.8

Q ss_pred             CcEEEEcCCC-CchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          423 LKSLDVWSCS-ELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      ++...+.+.. ..+.++..+..+++|++|++++|.+.+ +| .+.++++|+.|++++|. +..+|..+..+++|++|+++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence            5566665542 234455678899999999999998776 55 78889999999999886 55677655566899999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCcc-ccCCCCCCCceeeeecCcc-----------------cccCCcccEE
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLE-EDDGLPTNLHRLEIIDNKK-----------------IWKFSSLRQL  563 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~-----------------~~~l~~L~~L  563 (681)
                      +|.. ..+| .+..+++|+.|++++|......+ ..+..+++|++|++++|..                 +..+++|+.|
T Consensus       102 ~N~l-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  179 (198)
T 1ds9_A          102 YNQI-ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             EEEC-CCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred             CCcC-CcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence            9874 4465 57788999999999987554221 3477888899999988875                 3467777777


Q ss_pred             E
Q 045938          564 T  564 (681)
Q Consensus       564 ~  564 (681)
                      +
T Consensus       180 d  180 (198)
T 1ds9_A          180 D  180 (198)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.85  E-value=3e-07  Score=95.68  Aligned_cols=104  Identities=13%  Similarity=0.060  Sum_probs=62.6

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCc-----ccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCc
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENL-----KILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKL  495 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L  495 (681)
                      +|+.+.+..+ ....-...+.++++|+.+++.++...     ......|.++++|+.+.+...  +..++. .+..|++|
T Consensus       249 ~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          249 GITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSC
T ss_pred             CccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCc
Confidence            3777777543 22222355777777888777766543     233455677777887777732  455554 34456777


Q ss_pred             ceEeeccccccccc-cccCcccCCcceeeecccCCCC
Q 045938          496 TRLEISYCKRLQVL-PKGLHNLTSLQQLTIGEGGELP  531 (681)
Q Consensus       496 ~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~  531 (681)
                      +.+++..+  +..+ ...+..+ +|+.+.+.++....
T Consensus       326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            77777553  3333 3355666 77777777765433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.84  E-value=3.9e-07  Score=94.82  Aligned_cols=169  Identities=13%  Similarity=0.080  Sum_probs=89.6

Q ss_pred             CCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccc-cccCcccCCcceee
Q 045938          445 TSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVL-PKGLHNLTSLQQLT  523 (681)
Q Consensus       445 ~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~  523 (681)
                      .+|+.+.+..+ ........|.++++|+.+++..+  +..++...+.-.+|+.+.+.++  +..+ ...+..|++|+.+.
T Consensus       203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNG--VTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETT--CCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCC--ccEEChhHhhCCCCCCEEE
Confidence            45555555422 22223344555666666666542  3445544443356666666332  2333 33555666666666


Q ss_pred             ecccCCC-----CCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEec
Q 045938          524 IGEGGEL-----PSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIG  598 (681)
Q Consensus       524 l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~  598 (681)
                      +.++...     ..-...|..|++|+.+++.                 +   .+..++...+      ....+|+++.+.
T Consensus       278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-----------------~---~i~~I~~~aF------~~c~~L~~l~lp  331 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-----------------E---SIRILGQGLL------GGNRKVTQLTIP  331 (401)
T ss_dssp             EESSCCCCCTTCEECTTTTTTCTTCCEECCC-----------------T---TCCEECTTTT------TTCCSCCEEEEC
T ss_pred             eCCccccCCcccEECHHHhhCCccCCeEEeC-----------------C---ceEEEhhhhh------cCCCCccEEEEC
Confidence            6555432     1112234444444444443                 2   2333433332      234556666664


Q ss_pred             ccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCC---CcccccEEEeCCch
Q 045938          599 NFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKG---LPSSLLQLYIGGCP  648 (681)
Q Consensus       599 ~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~  648 (681)
                      +  +++.++. .|..+ +|+.+++.++ ....++...   +...+..|++-...
T Consensus       332 ~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          332 A--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             T--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             c--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence            3  4666654 56778 9999999987 566666543   34678899988743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.82  E-value=2.2e-07  Score=96.94  Aligned_cols=205  Identities=11%  Similarity=0.020  Sum_probs=125.5

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |+.+.+.... .......+.++.+|+.+.+..+ ........+.++..|+.+.+....  ..+......+.+|+.+.+..
T Consensus       164 L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~  239 (394)
T 4fs7_A          164 LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPD  239 (394)
T ss_dssp             CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECT
T ss_pred             CcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECC
Confidence            6666665431 1112234666777777777554 222233445666777777665433  23444455556777777754


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc----cccCCcccEEEEeccCCCCcCCCcc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK----IWKFSSLRQLTISGCDDDMVSFPPE  578 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~l~~L~~L~l~~~~~~~~~l~~~  578 (681)
                      .. ...-...+..+..++.+.+..+. .......+..+..++.+.......    +..+.+|+.+.+.+   .+..++..
T Consensus       240 ~~-~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~---~i~~I~~~  314 (394)
T 4fs7_A          240 SF-TELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD---SVKFIGEE  314 (394)
T ss_dssp             TC-CEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT---TCCEECTT
T ss_pred             Cc-eecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeecccccccccccccccccc---ccceechh
Confidence            32 12222345667777777776543 222223466677777776655433    44678888888866   35556655


Q ss_pred             ccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCCCC--cccccEEEeCC
Q 045938          579 DIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEKGL--PSSLLQLYIGG  646 (681)
Q Consensus       579 ~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~  646 (681)
                      .+      ....+|+++.+.+  .++.|+. .|..+++|+.+.+..+  ++.+...++  .++|+.+++.+
T Consensus       315 aF------~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          315 AF------ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TT------TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             hh------cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            44      4556788888864  5777765 6778899999999763  788887655  57899998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.81  E-value=6.1e-10  Score=125.50  Aligned_cols=124  Identities=15%  Similarity=0.075  Sum_probs=71.0

Q ss_pred             CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcce
Q 045938          418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTR  497 (681)
Q Consensus       418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~  497 (681)
                      .++. |++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|. +..+|..+..+++|+.
T Consensus       245 ~l~~-L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~  320 (727)
T 4b8c_D          245 KYDF-LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQF  320 (727)
T ss_dssp             GCCS-CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCC
T ss_pred             CCCC-CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccE
Confidence            3444 777777776554 55666677777777777777666 456667777777777777665 4466666666777777


Q ss_pred             EeeccccccccccccCcccC-CcceeeecccCCCCCccccCCCCCCCceeeeecC
Q 045938          498 LEISYCKRLQVLPKGLHNLT-SLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDN  551 (681)
Q Consensus       498 L~l~~~~~l~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  551 (681)
                      |++++|.....+|..+..+. .+..+++++|...+.+|      ..|+.|+++.|
T Consensus       321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            77777766555555443322 12235566666554443      34666666666

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.81  E-value=7e-11  Score=110.78  Aligned_cols=125  Identities=15%  Similarity=0.136  Sum_probs=84.8

Q ss_pred             HhcccCCCccEEEeecccCcccccC------cCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccccccccccc
Q 045938          439 ERLDNNTSLETISISECENLKILPS------GLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKG  512 (681)
Q Consensus       439 ~~l~~l~~L~~L~ls~~~~~~~~~~------~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  512 (681)
                      ..+.....++.++++.+.+.+..|.      .+..+++|++|++++|. +..+| .+..+++|++|++++|.. ..+|..
T Consensus        12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~   88 (198)
T 1ds9_A           12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLI-KKIENL   88 (198)
T ss_dssp             HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEEE-CSCSSH
T ss_pred             HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCCc-ccccch
Confidence            3455666777777777777666555      67778889999998876 44566 566778888888888874 467776


Q ss_pred             CcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--------cccCCcccEEEEecc
Q 045938          513 LHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--------IWKFSSLRQLTISGC  568 (681)
Q Consensus       513 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------~~~l~~L~~L~l~~~  568 (681)
                      +..+++|++|++++|...+ ++. ++.+++|++|++++|.+        +..+++|++|++++|
T Consensus        89 ~~~~~~L~~L~L~~N~l~~-l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           89 DAVADTLEELWISYNQIAS-LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHHHHCSEEEEEEEECCC-HHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             hhcCCcCCEEECcCCcCCc-CCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            6677888888888886443 443 55566666666666654        224455555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.77  E-value=6.1e-09  Score=113.60  Aligned_cols=104  Identities=16%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |+.|++++|.+.+ +|. ++.+++|++|++++|.+. .+|..++++++|+.|++++|. +..+| .+..+++|+.|++++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCC
Confidence            6777777765443 443 677777777777777666 556667777777777777766 33465 566667777777777


Q ss_pred             ccccccc-cccCcccCCcceeeecccCCCC
Q 045938          503 CKRLQVL-PKGLHNLTSLQQLTIGEGGELP  531 (681)
Q Consensus       503 ~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~  531 (681)
                      |...... |..++.+++|+.|++++|...+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            7644433 6667777777777777776443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.76  E-value=6.1e-09  Score=117.38  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=51.2

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |+.|++++|.+. .++..+..+++|++|+|++|.+. .+|..++++++|++|++++|.. ..+|..+..+++|++|++++
T Consensus       226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~  302 (727)
T 4b8c_D          226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFD  302 (727)
T ss_dssp             CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCSEEECCS
T ss_pred             CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCCEEECCC
Confidence            555555544332 33334444555555555555444 3444444455555555554442 24444444444555555555


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEE  535 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  535 (681)
                      |. +..+|..++.+++|+.|++++|...+.+|.
T Consensus       303 N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          303 NM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             SC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CC-CCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            43 234444444555555555555544444333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.68  E-value=2.6e-06  Score=88.82  Aligned_cols=81  Identities=11%  Similarity=0.174  Sum_probs=37.6

Q ss_pred             cccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeecccccccccc-ccCcccCC
Q 045938          441 LDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLP-KGLHNLTS  518 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~  518 (681)
                      +..+.+|+.+.+.++ ........+.++.+|+.+++...  +..+.. .+..|.+|+.+.+..+  +..+. ..+.+|++
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTT
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCC
Confidence            444555555555432 22222334555555666655422  334433 3334556666655443  22232 24455556


Q ss_pred             cceeeecc
Q 045938          519 LQQLTIGE  526 (681)
Q Consensus       519 L~~L~l~~  526 (681)
                      |+.+++..
T Consensus       368 L~~i~lp~  375 (394)
T 4fs7_A          368 LKKVELPK  375 (394)
T ss_dssp             CCEEEEEG
T ss_pred             CCEEEECC
Confidence            66655543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.65  E-value=6.1e-08  Score=88.00  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=43.0

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~  501 (681)
                      .++++++++.. ..+|..+  .++|++|++++|.+.+..+..+.++++|++|++++|. +..++.. +..+++|++|+++
T Consensus        11 ~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence            45555555432 2233222  2445555555555444444444445555555555444 2233322 2334444444444


Q ss_pred             cccccccccccCcccCCcceeeecccC
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGG  528 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~  528 (681)
                      +|......+..+..+++|+.|++++|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            444222222223344444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.63  E-value=5.9e-08  Score=88.05  Aligned_cols=82  Identities=15%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEee
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEI  500 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l  500 (681)
                      ++++|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|++|++++|. +..++. .+..+++|+.|++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEe
Confidence            35555555554444334444555555555555555444434344445555555555544 223332 2344455555555


Q ss_pred             cccc
Q 045938          501 SYCK  504 (681)
Q Consensus       501 ~~~~  504 (681)
                      ++|+
T Consensus       110 ~~N~  113 (170)
T 3g39_A          110 LNNP  113 (170)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            5544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.60  E-value=1.8e-07  Score=85.20  Aligned_cols=100  Identities=18%  Similarity=0.250  Sum_probs=44.8

Q ss_pred             cEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCC-CCCCCCcceEeecc
Q 045938          424 KSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQG-GLPCAKLTRLEISY  502 (681)
Q Consensus       424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~  502 (681)
                      +.++++++.. +.+|..+.  ++|++|++++|.+.+..|..++++++|++|++++|. +..++.. +..+++|++|++++
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence            4555555432 33333222  455555555555554444445555555555555543 2333332 23444455555544


Q ss_pred             ccccccccc-cCcccCCcceeeecccC
Q 045938          503 CKRLQVLPK-GLHNLTSLQQLTIGEGG  528 (681)
Q Consensus       503 ~~~l~~~~~-~l~~l~~L~~L~l~~~~  528 (681)
                      |... .+|. .+..+++|+.|++++|+
T Consensus        91 N~l~-~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           91 NHLK-SIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred             Cccc-eeCHHHhccccCCCEEEeCCCC
Confidence            4422 2222 23444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.59  E-value=8.6e-08  Score=87.29  Aligned_cols=83  Identities=16%  Similarity=0.058  Sum_probs=35.8

Q ss_pred             ccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceee
Q 045938          469 RQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLE  547 (681)
Q Consensus       469 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  547 (681)
                      ++|+.|++++|......+..+..+++|++|++++|.. ..+|. .+..+++|+.|++++|......+..++.+++|++|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            4455555554442222233344444555555555442 22322 234445555555555443322222244445555555


Q ss_pred             eecCc
Q 045938          548 IIDNK  552 (681)
Q Consensus       548 l~~~~  552 (681)
                      +++|.
T Consensus       112 L~~N~  116 (174)
T 2r9u_A          112 LYNNP  116 (174)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            55544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.46  E-value=1.4e-08  Score=104.68  Aligned_cols=146  Identities=16%  Similarity=0.116  Sum_probs=74.5

Q ss_pred             CcEEEEcCCCCchhHHHhcc-----cCCCccEEEeecccCcccccCcC-cCcccccEEeeccCCCcee----cCCCC-CC
Q 045938          423 LKSLDVWSCSELESIAERLD-----NNTSLETISISECENLKILPSGL-HNLRQLQEIGIWECENLVS----FPQGG-LP  491 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~ls~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~----l~~~~-~~  491 (681)
                      |++|++++|.+.......+.     ..++|++|++++|.+.......+ ..+++|+.|++++|.....    +...+ ..
T Consensus        74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~  153 (372)
T 3un9_A           74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD  153 (372)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred             CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence            66666666655443222222     22566666666666543322222 2345666666666653211    11111 12


Q ss_pred             CCCcceEeeccccccc----cccccCcccCCcceeeecccCCCCC----ccccCCCCCCCceeeeecCcc----------
Q 045938          492 CAKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELPS----LEEDDGLPTNLHRLEIIDNKK----------  553 (681)
Q Consensus       492 ~~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~----------  553 (681)
                      .++|++|++++|....    .++..+..+++|++|++++|.....    +...+..+++|++|++++|.+          
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            3467777777765432    1233344566677777776653321    223344555666666666665          


Q ss_pred             -cccCCcccEEEEecc
Q 045938          554 -IWKFSSLRQLTISGC  568 (681)
Q Consensus       554 -~~~l~~L~~L~l~~~  568 (681)
                       +...++|++|+|++|
T Consensus       234 ~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          234 AAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHCSSCCEEECTTS
T ss_pred             HHHhCCCCCEEeccCC
Confidence             113466677777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.36  E-value=6e-07  Score=91.68  Aligned_cols=183  Identities=17%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             cccCCCccEEEeecccCc---------ccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc
Q 045938          441 LDNNTSLETISISECENL---------KILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK  511 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~---------~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  511 (681)
                      ...+++|+.|.+.+....         ..+...+..+|+|+.|.+++|..+ .++. + ..++|+.|++..|........
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            445667777776543211         112223345677888888766333 2333 2 356788888877664332222


Q ss_pred             cC--cccCCcceeeecccCC-------CCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938          512 GL--HNLTSLQQLTIGEGGE-------LPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL  582 (681)
Q Consensus       512 ~l--~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~  582 (681)
                      .+  ..+++|+.|+++.+..       ...+...+.               ...+|+|+.|++.+|.  +..   .....
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~---------------~~~~p~Lr~L~L~~~~--i~~---~~~~~  271 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS---------------KDRFPNLKWLGIVDAE--EQN---VVVEM  271 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC---------------TTTCTTCCEEEEESCT--THH---HHHHH
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHh---------------cCCCCCcCEEeCCCCC--Cch---HHHHH
Confidence            22  2577888887753211       111111111               0134555555555541  110   00000


Q ss_pred             ccCCCcccccceeEecccCCccc-----ccccccCCCCCCEEeecCCCCCcccCCCCCcccc-cEEEeCCch
Q 045938          583 RTTLPLPACLASLMIGNFPNLER-----LSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSL-LQLYIGGCP  648 (681)
Q Consensus       583 ~~~~~~~~~L~~l~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L-~~L~i~~c~  648 (681)
                      ....+..++|++|+++.+ .+..     +...+..+++|+.|++++|. +..--...+...+ -.+++++..
T Consensus       272 la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          272 FLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             HHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHHCCSEEECCSBC
T ss_pred             HHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHHcCCEEEecCCc
Confidence            001124456666666542 3432     44455678899999998873 3321111111112 457777655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.32  E-value=5.3e-08  Score=100.34  Aligned_cols=161  Identities=15%  Similarity=0.108  Sum_probs=106.5

Q ss_pred             CcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhc-ccCCCccEEEeecccCcccccCc
Q 045938          386 LLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERL-DNNTSLETISISECENLKILPSG  464 (681)
Q Consensus       386 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~ls~~~~~~~~~~~  464 (681)
                      +|++|++++|. ++.. .    ...+... +...+.+|++|++++|.+.......+ ..+++|++|++++|.+.+.....
T Consensus        73 ~L~~L~Ls~n~-l~~~-~----~~~l~~~-L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           73 SLRQLNLAGVR-MTPV-K----CTVVAAV-LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             TCCEEECTTSC-CCHH-H----HHHHHHH-HSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             hCCEEEecCCC-CCHH-H----HHHHHHH-HhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            58888888854 3320 0    0011110 22233459999999998765544333 34678999999999886543333


Q ss_pred             C-----cCcccccEEeeccCCCce----ecCCCCCCCCCcceEeeccccccc----cccccCcccCCcceeeecccCCCC
Q 045938          465 L-----HNLRQLQEIGIWECENLV----SFPQGGLPCAKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELP  531 (681)
Q Consensus       465 l-----~~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~  531 (681)
                      +     ...++|++|++++|....    .+...+..+++|++|++++|....    .++..+...++|++|++++|....
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            2     235789999999987432    233334457789999999998543    234456677899999999997653


Q ss_pred             C----ccccCCCCCCCceeeeecCcc
Q 045938          532 S----LEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       532 ~----~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      .    +...+...++|++|++++|.+
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            2    333355678899999999987

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.26  E-value=1.4e-06  Score=89.10  Aligned_cols=82  Identities=16%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             CcEEEEcC-CCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          423 LKSLDVWS-CSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      |++|++++ |.+....+..+.++++|++|+|++|.+.+..|..|.++++|+.|++++|. +..+|...+....|+.|++.
T Consensus        33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~  111 (347)
T 2ifg_A           33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLS  111 (347)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECC
T ss_pred             eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCceEEEee
Confidence            77788875 65544444567777888888888877777667777777788888887776 44555544433347777777


Q ss_pred             cccc
Q 045938          502 YCKR  505 (681)
Q Consensus       502 ~~~~  505 (681)
                      +|..
T Consensus       112 ~N~~  115 (347)
T 2ifg_A          112 GNPL  115 (347)
T ss_dssp             SSCC
T ss_pred             CCCc
Confidence            7764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.25  E-value=1.2e-06  Score=89.47  Aligned_cols=61  Identities=25%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhc---ccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCC
Q 045938          419 LPPSLKSLDVWSCSELESIAERL---DNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECE  480 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~  480 (681)
                      +|. |+.|++.+|.+....+..+   ..+++|++|+++.|.+.+.    ++..+.++++|+.|++++|.
T Consensus       251 ~p~-Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          251 FPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CTT-CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCC-cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            444 7777777776654433222   2455666666665554432    22223334555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.21  E-value=0.00022  Score=74.01  Aligned_cols=123  Identities=17%  Similarity=0.219  Sum_probs=71.8

Q ss_pred             HhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeecccccccccc-ccCccc
Q 045938          439 ERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLP-KGLHNL  516 (681)
Q Consensus       439 ~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l  516 (681)
                      ..+.++..|+.+.+.+... ......+.++++|+.+.+..  .+..++. .+..|.+|+.+.+..+  +..+. ..+..|
T Consensus       259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C  333 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred             ceeeecccccEEecccccc-eecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCC
Confidence            3466777788777754322 23344566778888888763  2445555 4456778888888653  34443 366778


Q ss_pred             CCcceeeecccCCCCCccccCCCCCCCceeeeecCcc----cccCCcccEEEEec
Q 045938          517 TSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK----IWKFSSLRQLTISG  567 (681)
Q Consensus       517 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~l~~L~~L~l~~  567 (681)
                      .+|+.+.+..+ ....-..+|..|++|+.+++.++..    +..+..|+.+.+..
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence            88888888543 2222234577788888888776654    33555666665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=1e-06  Score=78.88  Aligned_cols=90  Identities=9%  Similarity=0.171  Sum_probs=57.5

Q ss_pred             CCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhc---cCCccEEeeeCCcCccc
Q 045938          204 PKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQL---SCILEYIDLRDCQDLVK  280 (681)
Q Consensus       204 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~  280 (681)
                      ..|++|++++|. +++   .....+..+++|+.|++++|..+++       .++..+...   +++|++|++++|..+++
T Consensus        61 ~~L~~LDLs~~~-Itd---~GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMS---IGFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCC-CCG---GGGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCC-ccH---HHHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            468888888887 443   2233457888888888888887776       445555432   35677777777765443


Q ss_pred             -CCCCCCCCCCcceEEEeCCCCcee
Q 045938          281 -LPQSPLSLSSLREIEIYGCSSLVS  304 (681)
Q Consensus       281 -l~~~~~~l~~L~~L~L~~~~~l~~  304 (681)
                       --..+.++++|++|++++|+.+++
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCCc
Confidence             111234566777777777766655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.20  E-value=3.1e-06  Score=86.57  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             cEEEEcCCCCchhHHHhcccCCCccEEEeec-ccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          424 KSLDVWSCSELESIAERLDNNTSLETISISE-CENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       424 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~-~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      ..++.++++.+..+|. +..+++|++|+|++ |.+....+..++++++|+.|++++|......+..+..+++|+.|++++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3567776634566777 88889999999986 777777667888899999999998874443444567788999999999


Q ss_pred             ccccccccccCcccCCcceeeecccCCCC
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELP  531 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~  531 (681)
                      |.. ..+|........|+.|++.+|....
T Consensus        90 N~l-~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NAL-ESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SCC-SCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             Ccc-ceeCHHHcccCCceEEEeeCCCccC
Confidence            875 4555544333348888888887543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.20  E-value=0.00042  Score=71.98  Aligned_cols=100  Identities=13%  Similarity=0.206  Sum_probs=64.6

Q ss_pred             CCCCCCCceeeeecCcc------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-c
Q 045938          537 DGLPTNLHRLEIIDNKK------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-S  609 (681)
Q Consensus       537 ~~~~~~L~~L~l~~~~~------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~  609 (681)
                      |..+.+|+.+.+.....      +.++++|+.+.+..   .+..++...+      ....+|+++.|.+  +++.|.. .
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~---~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~~a  329 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS---RITELPESVF------AGCISLKSIDIPE--GITQILDDA  329 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT---TCCEECTTTT------TTCTTCCEEECCT--TCCEECTTT
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCC---cccccCceee------cCCCCcCEEEeCC--cccEehHhH
Confidence            55556666666544322      33566777777754   4555665544      3456777777764  4667765 5


Q ss_pred             ccCCCCCCEEeecCCCCCcccCCCCC--cccccEEEeCCchh
Q 045938          610 IVDLQNLTHLELEDCPKLKYFPEKGL--PSSLLQLYIGGCPL  649 (681)
Q Consensus       610 ~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~  649 (681)
                      |..+++|+.+.+..  .++.+...++  .++|+.+++.++..
T Consensus       330 F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          330 FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee
Confidence            67788888888864  4777776544  57888888887653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=1.7e-06  Score=77.41  Aligned_cols=67  Identities=12%  Similarity=0.120  Sum_probs=35.5

Q ss_pred             CCCCCcceEEEeCCCCceeec--CCCC----CCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccc
Q 045938          286 LSLSSLREIEIYGCSSLVSFP--EVAL----PSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTY  353 (681)
Q Consensus       286 ~~l~~L~~L~L~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~  353 (681)
                      .++++|++|++++|..+++..  .++.    +++|++|++++|..+++..-..+ ..+++|+.|++++|+.+++
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence            455666666666665555421  1111    23566666666665554322222 3456666666666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.92  E-value=0.0021  Score=66.24  Aligned_cols=128  Identities=13%  Similarity=0.167  Sum_probs=63.6

Q ss_pred             CCCCCcceEeeccccccccc-cccCcccCCcceeeecccCCCCCc-cccCCCCCCCceeeeecCcc------cccCCccc
Q 045938          490 LPCAKLTRLEISYCKRLQVL-PKGLHNLTSLQQLTIGEGGELPSL-EEDDGLPTNLHRLEIIDNKK------IWKFSSLR  561 (681)
Q Consensus       490 ~~~~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~------~~~l~~L~  561 (681)
                      ..+.+|+.+.+...  ...+ ...+..+..|+.+.+..+  +..+ ...+..+.+|+.+.+..+-.      +.++++|+
T Consensus       214 ~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          214 SYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCC
T ss_pred             ccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccccceeccccccccccccc
Confidence            34445555555432  1222 223445555655555433  1111 22344555555555543321      33566666


Q ss_pred             EEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCCCcccCCC
Q 045938          562 QLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPKLKYFPEK  633 (681)
Q Consensus       562 ~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~  633 (681)
                      .+.+.++  .++.++...+      ....+|+++.+.+  +++.|+. .|.++++|+.+.+..  .++.+...
T Consensus       290 ~i~l~~~--~i~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~  350 (379)
T 4h09_A          290 KVVMDNS--AIETLEPRVF------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESG  350 (379)
T ss_dssp             EEEECCT--TCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred             ccccccc--ccceehhhhh------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchh
Confidence            6666543  3445554443      3445666666653  4566654 456677777777654  35555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.83  E-value=0.0026  Score=65.49  Aligned_cols=83  Identities=17%  Similarity=0.220  Sum_probs=37.1

Q ss_pred             hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCC
Q 045938          440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTS  518 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~  518 (681)
                      .+.++..|+.+.+..+ ........+.++.+|+.+.+...  +..++. .+..|++|+.+.+.++.....-...+.+|.+
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            3445555555555433 22222333444555555555432  233333 2334555555555543321112224445555


Q ss_pred             cceeeec
Q 045938          519 LQQLTIG  525 (681)
Q Consensus       519 L~~L~l~  525 (681)
                      |+.+.+.
T Consensus       312 L~~i~lp  318 (379)
T 4h09_A          312 LSSVTLP  318 (379)
T ss_dssp             CCEEECC
T ss_pred             CCEEEcC
Confidence            5555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.22  E-value=3.9e-05  Score=70.26  Aligned_cols=36  Identities=22%  Similarity=0.204  Sum_probs=16.6

Q ss_pred             CcEEEEcCC-CCchh----HHHhcccCCCccEEEeecccCc
Q 045938          423 LKSLDVWSC-SELES----IAERLDNNTSLETISISECENL  458 (681)
Q Consensus       423 L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~ls~~~~~  458 (681)
                      |++|++++| .+...    +...+...++|++|++++|.+.
T Consensus        38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            555555555 43322    2233344455555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.20  E-value=0.00011  Score=67.27  Aligned_cols=114  Identities=14%  Similarity=0.037  Sum_probs=47.4

Q ss_pred             HhcccCCCccEEEeecc-cCccc----ccCcCcCcccccEEeeccCCCce----ecCCCCCCCCCcceEeecccccccc-
Q 045938          439 ERLDNNTSLETISISEC-ENLKI----LPSGLHNLRQLQEIGIWECENLV----SFPQGGLPCAKLTRLEISYCKRLQV-  508 (681)
Q Consensus       439 ~~l~~l~~L~~L~ls~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~~~~l~~-  508 (681)
                      ..+...+.|++|++++| .+...    +...+...++|++|++++|..-.    .+...+...++|++|++++|..... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            33444555555555555 33321    12223334455555555554211    0111122233455555555543221 


Q ss_pred             ---ccccCcccCCcceeee--cccCCCCC----ccccCCCCCCCceeeeecCc
Q 045938          509 ---LPKGLHNLTSLQQLTI--GEGGELPS----LEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       509 ---~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~  552 (681)
                         +...+...++|++|++  ++|.....    +...+...++|++|++++|.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence               2233444445555555  44443221    12223334455555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.14  E-value=6.8e-05  Score=72.35  Aligned_cols=80  Identities=15%  Similarity=0.052  Sum_probs=49.5

Q ss_pred             ccCCCccEEEeecccCcc--cccCcCcCcccccEEeeccCCCceecCCCCCCCC--CcceEeeccccccccccc------
Q 045938          442 DNNTSLETISISECENLK--ILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCA--KLTRLEISYCKRLQVLPK------  511 (681)
Q Consensus       442 ~~l~~L~~L~ls~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~L~~L~l~~~~~l~~~~~------  511 (681)
                      .++++|++|++++|.+.+  .++..+..+++|+.|++++|... .+.. +..+.  +|++|++.+|+....+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cchh-hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            467888888888888766  34555667788888888877633 2211 12222  677777777775544432      


Q ss_pred             -cCcccCCcceee
Q 045938          512 -GLHNLTSLQQLT  523 (681)
Q Consensus       512 -~l~~l~~L~~L~  523 (681)
                       .+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             244566666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.64  E-value=0.00058  Score=65.82  Aligned_cols=80  Identities=20%  Similarity=0.212  Sum_probs=58.5

Q ss_pred             CCCCCCcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccccCcCcCcc--cccEEeeccCCCceecCC------
Q 045938          418 NLPPSLKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKILPSGLHNLR--QLQEIGIWECENLVSFPQ------  487 (681)
Q Consensus       418 ~~p~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~l~~------  487 (681)
                      .+|. |++|++++|.+..  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|++++|+....++.      
T Consensus       168 ~l~~-L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HCTT-CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hCCC-CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            4555 9999999998765  4555667899999999999988764  2344444  899999999996654542      


Q ss_pred             -CCCCCCCcceEee
Q 045938          488 -GGLPCAKLTRLEI  500 (681)
Q Consensus       488 -~~~~~~~L~~L~l  500 (681)
                       .+..+|+|+.||-
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             2345788888863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=91.15  E-value=0.27  Score=41.36  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=15.8

Q ss_pred             CCCEEeecCCCCCcccCCCCC--cccccEEEeCCch
Q 045938          615 NLTHLELEDCPKLKYFPEKGL--PSSLLQLYIGGCP  648 (681)
Q Consensus       615 ~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~  648 (681)
                      +|++|++++| .++.++...+  +++|++|++.+||
T Consensus        32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            4555555554 4455544322  3445555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.40  E-value=0.48  Score=39.75  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=31.3

Q ss_pred             CcccccceeEecccCCcccccc-cccCCCCCCEEeecCCCC
Q 045938          587 PLPACLASLMIGNFPNLERLSS-SIVDLQNLTHLELEDCPK  626 (681)
Q Consensus       587 ~~~~~L~~l~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~  626 (681)
                      ..+++|+.|+++++ +|+.++. .|..+++|+.|++++||.
T Consensus        28 ~lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           28 AFPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CCCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence            36678889999884 7888887 457789999999999864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=88.63  E-value=0.19  Score=45.52  Aligned_cols=58  Identities=14%  Similarity=0.152  Sum_probs=26.6

Q ss_pred             CcEEEEcCC-CCchh----HHHhcccCCCccEEEeecccCcccccCc----CcCcccccEEeeccCC
Q 045938          423 LKSLDVWSC-SELES----IAERLDNNTSLETISISECENLKILPSG----LHNLRQLQEIGIWECE  480 (681)
Q Consensus       423 L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~ls~~~~~~~~~~~----l~~l~~L~~L~l~~~~  480 (681)
                      |++|+++++ .+.+.    +...+..-+.|+.|+|++|.+.+.....    +..-+.|++|++++|.
T Consensus        43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            566666553 32221    2334445555556666555554322111    2223445555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=83.58  E-value=0.53  Score=42.58  Aligned_cols=89  Identities=13%  Similarity=0.050  Sum_probs=45.1

Q ss_pred             cccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc----CCCCCCCCCCcceEEEeCCCCcee
Q 045938          229 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK----LPQSPLSLSSLREIEIYGCSSLVS  304 (681)
Q Consensus       229 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~l~~  304 (681)
                      ..-+.|+.|+++++..+..-...   .....+ ..-+.|+.|+|++|.+-..    +...+..-+.|++|+|+.|. +++
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~---~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~  112 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIR---SLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTP  112 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHH---HHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCH
T ss_pred             hcCCCccEEECCCCCCCCHHHHH---HHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCH
Confidence            44566777777654333321111   111112 2336677777777765322    22223344667777777654 443


Q ss_pred             ec------CCCCCCCceEEEEecC
Q 045938          305 FP------EVALPSKLKKIEIREC  322 (681)
Q Consensus       305 ~~------~~~~~~~L~~L~l~~~  322 (681)
                      -.      .+..-..|++|+++++
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCC
Confidence            21      2233456777777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	681
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 5/155 (3%)

Query: 418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIW 477
           +LPP    LD+ +    E       N  +L T+ +   +  KI P     L +L+ + + 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 478 ECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDD 537
           +   L   P+      +  R+  +   +++       N   + +L               
Sbjct: 88  KN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 538 GLPTNLHRLEIIDNK----KIWKFSSLRQLTISGC 568
                L  + I D            SL +L + G 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	681
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.39
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.28
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.01
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.0
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.99
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.97
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.94
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.83
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.71

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=7.7e-20  Score=189.47  Aligned_cols=187  Identities=22%  Similarity=0.229  Sum_probs=121.9

Q ss_pred             hcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCc
Q 045938          440 RLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL  519 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L  519 (681)
                      ....+++++.+++++|.+.+..+  ....++|+.|++++|. +..++ .+..+++|+.+++++|... .++ .++.+++|
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~~~~~~~L  265 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQIS-NLA-PLSGLTKL  265 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCC-CCG-GGTTCTTC
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCC-CCCcc-hhhcccccchhccccCccC-CCC-cccccccC
Confidence            34556666666666665554332  2345666666666665 33333 2445566777777666533 232 25556677


Q ss_pred             ceeeecccCCCCCccccCCCCCCCceeeeecCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccce
Q 045938          520 QQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLAS  594 (681)
Q Consensus       520 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~  594 (681)
                      ++|+++++...+ +++ +..++.++.+++.+|..     +..+++++.|++++|  .+..++. .       ..+++|++
T Consensus       266 ~~L~l~~~~l~~-~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n--~l~~l~~-l-------~~l~~L~~  333 (384)
T d2omza2         266 TELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN--NISDISP-V-------SSLTKLQR  333 (384)
T ss_dssp             SEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS--CCSCCGG-G-------GGCTTCCE
T ss_pred             CEeeccCcccCC-CCc-cccccccccccccccccccccccchhcccCeEECCCC--CCCCCcc-c-------ccCCCCCE
Confidence            777776665433 222 55666677777666654     346777888888876  5555543 1       36678888


Q ss_pred             eEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCc
Q 045938          595 LMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGC  647 (681)
Q Consensus       595 l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c  647 (681)
                      |+++++ .++.++ .+..+++|++|++++| .++.+++.+-+++|++|+|++|
T Consensus       334 L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         334 LFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             EECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence            888887 777776 5788999999999987 6778776666789999999876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.1e-18  Score=180.73  Aligned_cols=337  Identities=17%  Similarity=0.161  Sum_probs=196.6

Q ss_pred             ccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCC
Q 045938          230 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVA  309 (681)
Q Consensus       230 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~  309 (681)
                      .+.+|++|+++++ .++++..      +    ..+++|++|++++|.. ++++. ++++++|++|++++|. +..++..+
T Consensus        42 ~l~~l~~L~l~~~-~I~~l~g------l----~~L~nL~~L~Ls~N~l-~~l~~-l~~L~~L~~L~L~~n~-i~~i~~l~  107 (384)
T d2omza2          42 DLDQVTTLQADRL-GIKSIDG------V----EYLNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQ-IADITPLA  107 (384)
T ss_dssp             HHTTCCEEECCSS-CCCCCTT------G----GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGGT
T ss_pred             HhCCCCEEECCCC-CCCCccc------c----ccCCCCCEEeCcCCcC-CCCcc-ccCCcccccccccccc-cccccccc
Confidence            4566777777765 4554421      1    2346777777777654 55553 6677777777777765 55566566


Q ss_pred             CCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcce
Q 045938          310 LPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEG  389 (681)
Q Consensus       310 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~  389 (681)
                      .+++|+.|+++++. +..++..   .....+.......+ .+..........................+..   ......
T Consensus       108 ~l~~L~~L~~~~~~-~~~~~~~---~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  179 (384)
T d2omza2         108 NLTNLTGLTLFNNQ-ITDIDPL---KNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLAN---LTTLER  179 (384)
T ss_dssp             TCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGGGTT---CTTCCE
T ss_pred             cccccccccccccc-ccccccc---cccccccccccccc-cccccccccccccccccccccccchhhhhcc---cccccc
Confidence            67777777776655 3333322   22333333333221 1111111111111000000000001001000   000111


Q ss_pred             eeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcc
Q 045938          390 LHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLR  469 (681)
Q Consensus       390 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~  469 (681)
                      ....... ...          ..  ....++. ++.+++++|...+..  ....+++|++|++++|.+..  ++.+..++
T Consensus       180 ~~~~~~~-~~~----------~~--~~~~l~~-~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~~--~~~l~~l~  241 (384)
T d2omza2         180 LDISSNK-VSD----------IS--VLAKLTN-LESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD--IGTLASLT  241 (384)
T ss_dssp             EECCSSC-CCC----------CG--GGGGCTT-CSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC--CGGGGGCT
T ss_pred             ccccccc-ccc----------cc--ccccccc-cceeeccCCccCCCC--cccccCCCCEEECCCCCCCC--cchhhccc
Confidence            1111100 000          00  0333444 888888887655433  25667788888888887664  23567788


Q ss_pred             cccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeee
Q 045938          470 QLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEII  549 (681)
Q Consensus       470 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  549 (681)
                      +|+.+++++|.. ..++. +..+++|++|+++++... .++ .+..++.++.+.+.+|...+ ++. +..++++++|+++
T Consensus       242 ~L~~L~l~~n~l-~~~~~-~~~~~~L~~L~l~~~~l~-~~~-~~~~~~~l~~l~~~~n~l~~-~~~-~~~~~~l~~L~ls  315 (384)
T d2omza2         242 NLTDLDLANNQI-SNLAP-LSGLTKLTELKLGANQIS-NIS-PLAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLY  315 (384)
T ss_dssp             TCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECC
T ss_pred             ccchhccccCcc-CCCCc-ccccccCCEeeccCcccC-CCC-cccccccccccccccccccc-ccc-cchhcccCeEECC
Confidence            888888888763 34443 556778888888887643 333 35667788888888776543 333 6777888888888


Q ss_pred             cCcc-----cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCC
Q 045938          550 DNKK-----IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDC  624 (681)
Q Consensus       550 ~~~~-----~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c  624 (681)
                      +|+.     +..+++|++|++++|  .+..++. .       ..+++|++|+++++ .++.++. +..+++|+.|++++|
T Consensus       316 ~n~l~~l~~l~~l~~L~~L~L~~n--~l~~l~~-l-------~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         316 FNNISDISPVSSLTKLQRLFFANN--KVSDVSS-L-------ANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCSCCGGGGGCTTCCEEECCSS--CCCCCGG-G-------GGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCCCcccccCCCCCEEECCCC--CCCCChh-H-------cCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence            8876     457889999999987  5666653 2       46789999999886 7888775 888999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=8.1e-19  Score=176.02  Aligned_cols=244  Identities=14%  Similarity=0.108  Sum_probs=177.2

Q ss_pred             CcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcC-CCCchhHHHhcccCCCccEEEeecccCcccccCc
Q 045938          386 LLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWS-CSELESIAERLDNNTSLETISISECENLKILPSG  464 (681)
Q Consensus       386 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~  464 (681)
                      ++++|+++++. +....   .+|..     ++.++. |++|++++ |.+.+.+|..++++++|++|++++|.+.+..+..
T Consensus        51 ~v~~L~L~~~~-l~g~~---~lp~~-----l~~L~~-L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~  120 (313)
T d1ogqa_          51 RVNNLDLSGLN-LPKPY---PIPSS-----LANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF  120 (313)
T ss_dssp             CEEEEEEECCC-CSSCE---ECCGG-----GGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred             EEEEEECCCCC-CCCCC---CCChH-----HhcCcc-ccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            67888887742 22100   12222     555666 88888876 4555677888888888888888888888777777


Q ss_pred             CcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCc-ceeeecccCCCCCccccCCCCCCC
Q 045938          465 LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSL-QQLTIGEGGELPSLEEDDGLPTNL  543 (681)
Q Consensus       465 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~L  543 (681)
                      +..+++|+.+++++|.....+|..+..++.++.+++++|.....+|..+..+.++ +.+++++|...+..+..++.+.. 
T Consensus       121 ~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-  199 (313)
T d1ogqa_         121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-  199 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-
T ss_pred             ccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-
Confidence            7778888888888877666677777778888888888888777777777776665 77777777766666665555543 


Q ss_pred             ceeeeecCcc-------cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcc-cccccccCCCC
Q 045938          544 HRLEIIDNKK-------IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLE-RLSSSIVDLQN  615 (681)
Q Consensus       544 ~~L~l~~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~-~l~~~~~~~~~  615 (681)
                      ..+++..+..       ...+++++.+++.+|  .+...+...       ...++|+.|+++++ ++. .+|..+.++++
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~l~~~~~~~-------~~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~  269 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN--SLAFDLGKV-------GLSKNLNGLDLRNN-RIYGTLPQGLTQLKF  269 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSS--EECCBGGGC-------CCCTTCCEEECCSS-CCEECCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccccccccccc--ccccccccc-------ccccccccccCccC-eecccCChHHhCCCC
Confidence            3577776654       347788999999886  333333322       46788999999986 666 78999999999


Q ss_pred             CCEEeecCCCCCcccCCCCCcccccEEEeCCchhH
Q 045938          616 LTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLI  650 (681)
Q Consensus       616 L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l  650 (681)
                      |++|++++|.....+|..+.+++|+.+++++|+.+
T Consensus       270 L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             CCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence            99999999843337888777889999999998755

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.73  E-value=4.1e-18  Score=170.81  Aligned_cols=225  Identities=13%  Similarity=0.068  Sum_probs=132.1

Q ss_pred             CCccEEeeeC-CcCcccCCCCCCCCCCcceEEEeCCCCceeecC--CCCCCCceEEEEecCCCCCccccccccCCCCccc
Q 045938          265 CILEYIDLRD-CQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCDTNSSLE  341 (681)
Q Consensus       265 ~~L~~L~l~~-~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~  341 (681)
                      ++|++|++++ |...+.+|..++++++|++|++++|. +..++.  ...+.+|+.+++++|.....+|..+  ..++.++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l--~~l~~L~  152 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLV  152 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCC
T ss_pred             ccccccccccccccccccccccccccccchhhhcccc-ccccccccccchhhhcccccccccccccCchhh--ccCcccc
Confidence            6666666665 33334567677777777777777665 333322  2335667777777666555555554  5666666


Q ss_pred             eeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCC
Q 045938          342 ILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPP  421 (681)
Q Consensus       342 ~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~  421 (681)
                      .++++++.....++..                                                          +..++.
T Consensus       153 ~l~l~~n~l~~~ip~~----------------------------------------------------------~~~l~~  174 (313)
T d1ogqa_         153 GITFDGNRISGAIPDS----------------------------------------------------------YGSFSK  174 (313)
T ss_dssp             EEECCSSCCEEECCGG----------------------------------------------------------GGCCCT
T ss_pred             eeeccccccccccccc----------------------------------------------------------cccccc
Confidence            6666653211111100                                                          222223


Q ss_pred             CCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          422 SLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       422 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      .++.+++++|......+..+..+..+ .++++.+...+.+|..++.+++++.+++.++.....++ .+..+++|+.|+++
T Consensus       175 l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls  252 (313)
T d1ogqa_         175 LFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR  252 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCc
Confidence            24556666665555545455554433 56666666666666666667777777777665433333 35556677777777


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      +|.....+|..++.+++|++|++++|...+.+|. ++.+++|+.+++++|+.
T Consensus       253 ~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             cCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            7776656777777777777777777766656654 56666666666666653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.72  E-value=3.6e-16  Score=155.77  Aligned_cols=124  Identities=13%  Similarity=0.078  Sum_probs=64.7

Q ss_pred             CcEEEEcCCCCch--hHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEee
Q 045938          423 LKSLDVWSCSELE--SIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEI  500 (681)
Q Consensus       423 L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l  500 (681)
                      ...++...+....  .....+..+++|+.+++++|.+.. ++..  .+++|+.|++++|......+..+..++.++.|++
T Consensus       126 ~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~  202 (305)
T d1xkua_         126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL  202 (305)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             ccccccccccccccCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccc
Confidence            4445554443221  122345566666777766665543 2222  2456666666666555444444555566666666


Q ss_pred             ccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeec
Q 045938          501 SYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIID  550 (681)
Q Consensus       501 ~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  550 (681)
                      ++|......+..+..+++|++|++++|. +..+|+.+..+++|++|++++
T Consensus       203 s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         203 SFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCS
T ss_pred             ccccccccccccccccccceeeeccccc-ccccccccccccCCCEEECCC
Confidence            6665444444455566666666666664 334444444444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=4.5e-16  Score=155.08  Aligned_cols=247  Identities=15%  Similarity=0.116  Sum_probs=142.3

Q ss_pred             ccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCC
Q 045938          232 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALP  311 (681)
Q Consensus       232 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~  311 (681)
                      +++++|+++++ .+++++...+        ..+++|++|++++|......|..+..+++|++|++++|. ++.++.. ..
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f--------~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~-~~   99 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGDF--------KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK-MP   99 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTT--------TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS-CC
T ss_pred             CCCCEEECcCC-cCCCcChhHh--------hccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccc-hh
Confidence            45666666665 4555554321        122566666666666544345556666666666666653 5555432 33


Q ss_pred             CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceee
Q 045938          312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLH  391 (681)
Q Consensus       312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~  391 (681)
                      ..++.|++.++. +..++...+ .....++.+.+..+..........                     .....++|+.++
T Consensus       100 ~~l~~L~~~~n~-l~~l~~~~~-~~~~~~~~l~~~~n~~~~~~~~~~---------------------~~~~l~~L~~l~  156 (305)
T d1xkua_         100 KTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENG---------------------AFQGMKKLSYIR  156 (305)
T ss_dssp             TTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSSCCCGGGBCTT---------------------GGGGCTTCCEEE
T ss_pred             hhhhhhhccccc-hhhhhhhhh-hccccccccccccccccccCCCcc---------------------ccccccccCccc
Confidence            556666666554 333333322 334444444444322111100000                     011123567777


Q ss_pred             eccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccc
Q 045938          392 ISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQL  471 (681)
Q Consensus       392 l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L  471 (681)
                      ++++. +.. ++             ...++++++|++++|......+..+..++.+++|++++|.+.+..+..+.++++|
T Consensus       157 l~~n~-l~~-l~-------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         157 IADTN-ITT-IP-------------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             CCSSC-CCS-CC-------------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             cccCC-ccc-cC-------------cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc
Confidence            76642 222 11             1223458888888877766666777788888888888887777667777778888


Q ss_pred             cEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc-------cCcccCCcceeeecccCC
Q 045938          472 QEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK-------GLHNLTSLQQLTIGEGGE  529 (681)
Q Consensus       472 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-------~l~~l~~L~~L~l~~~~~  529 (681)
                      ++|++++|. +..+|.++..+++|++|++++|. ++.++.       .....++|+.|++++|+.
T Consensus       222 ~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         222 RELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             eeeeccccc-ccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            888888775 55677777777888888888876 344432       223456677777777764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.66  E-value=2.6e-14  Score=145.16  Aligned_cols=312  Identities=26%  Similarity=0.267  Sum_probs=161.1

Q ss_pred             ccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCC
Q 045938          232 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALP  311 (681)
Q Consensus       232 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~  311 (681)
                      .++++|+++++ .++++|+.            +++|++|++++|.. .++|..   +.+|++|++++|. ++.++.  .+
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~------------~~~L~~L~Ls~N~l-~~lp~~---~~~L~~L~l~~n~-l~~l~~--lp   97 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL------------PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNN-LKALSD--LP   97 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC------------CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSC-CSCCCS--CC
T ss_pred             cCCCEEEeCCC-CCCCCCCC------------CCCCCEEECCCCCC-cccccc---hhhhhhhhhhhcc-cchhhh--hc
Confidence            46888888886 57777643            37888888887755 677763   4578888888764 665553  34


Q ss_pred             CCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceee
Q 045938          312 SKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLH  391 (681)
Q Consensus       312 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~  391 (681)
                      +.|++|++++|. +..+|..   ..+++|+.++++++. +...+..  ..                        .+..+.
T Consensus        98 ~~L~~L~L~~n~-l~~lp~~---~~l~~L~~L~l~~~~-~~~~~~~--~~------------------------~l~~l~  146 (353)
T d1jl5a_          98 PLLEYLGVSNNQ-LEKLPEL---QNSSFLKIIDVDNNS-LKKLPDL--PP------------------------SLEFIA  146 (353)
T ss_dssp             TTCCEEECCSSC-CSSCCCC---TTCTTCCEEECCSSC-CSCCCCC--CT------------------------TCCEEE
T ss_pred             cccccccccccc-cccccch---hhhccceeecccccc-ccccccc--cc------------------------cccchh
Confidence            678888888876 6677754   567888888887643 2222211  11                        133333


Q ss_pred             eccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccc
Q 045938          392 ISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQL  471 (681)
Q Consensus       392 l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L  471 (681)
                      +..+..... ..            +..++. ++.+.+.++..... +   ......+.+....+... ..+ ....++.|
T Consensus       147 ~~~~~~~~~-~~------------l~~l~~-l~~L~l~~n~~~~~-~---~~~~~~~~l~~~~~~~~-~~~-~~~~l~~L  206 (353)
T d1jl5a_         147 AGNNQLEEL-PE------------LQNLPF-LTAIYADNNSLKKL-P---DLPLSLESIVAGNNILE-ELP-ELQNLPFL  206 (353)
T ss_dssp             CCSSCCSSC-CC------------CTTCTT-CCEEECCSSCCSSC-C---CCCTTCCEEECCSSCCS-SCC-CCTTCTTC
T ss_pred             hcccccccc-cc------------cccccc-ceeccccccccccc-c---ccccccccccccccccc-ccc-cccccccc
Confidence            332211110 00            222222 55555555533221 1   11112223333322221 112 23445666


Q ss_pred             cEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecC
Q 045938          472 QEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDN  551 (681)
Q Consensus       472 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  551 (681)
                      +.++++++... .++.   ..+++..+.+.++... ..+.   ...++...++..+...+ +.   .........++..+
T Consensus       207 ~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~~~-l~---~l~~~~~~~~~~~~  274 (353)
T d1jl5a_         207 TTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT-DLPE---LPQSLTFLDVSENIFSG-LS---ELPPNLYYLNASSN  274 (353)
T ss_dssp             CEEECCSSCCS-SCCS---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSE-ES---CCCTTCCEEECCSS
T ss_pred             ccccccccccc-cccc---cccccccccccccccc-cccc---ccccccccccccccccc-cc---cccchhcccccccC
Confidence            66666655422 2222   1234555555554422 1111   12233333333322111 10   01122233333333


Q ss_pred             cc---cccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCc
Q 045938          552 KK---IWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLK  628 (681)
Q Consensus       552 ~~---~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~  628 (681)
                      ..   ...+++|++|++++|  .+..+|.          .+++|+.|+++++ +++.+|..   +++|++|++++|+ ++
T Consensus       275 ~~~~~~~~~~~L~~L~Ls~N--~l~~lp~----------~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~  337 (353)
T d1jl5a_         275 EIRSLCDLPPSLEELNVSNN--KLIELPA----------LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LR  337 (353)
T ss_dssp             CCSEECCCCTTCCEEECCSS--CCSCCCC----------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CS
T ss_pred             ccccccccCCCCCEEECCCC--ccCcccc----------ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CC
Confidence            32   123567777777776  4556664          3467777777765 56666642   4577778887774 77


Q ss_pred             ccCCCCCcccccEEEeC
Q 045938          629 YFPEKGLPSSLLQLYIG  645 (681)
Q Consensus       629 ~l~~~~~~~~L~~L~i~  645 (681)
                      .+|.  .+.+|+.|.+.
T Consensus       338 ~lp~--~~~~L~~L~~~  352 (353)
T d1jl5a_         338 EFPD--IPESVEDLRMN  352 (353)
T ss_dssp             SCCC--CCTTCCEEECC
T ss_pred             CCCc--cccccCeeECc
Confidence            7776  55667777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-15  Score=147.30  Aligned_cols=178  Identities=19%  Similarity=0.159  Sum_probs=105.8

Q ss_pred             CCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceE
Q 045938          419 LPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRL  498 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L  498 (681)
                      +|+++++|++++|.+.+..+..+.++++|++|++++|.+.. ++ .++.+++|++|++++|+ +..++..+..+++|+.|
T Consensus        29 lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVL  105 (266)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEE
T ss_pred             cCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccc-ccccccccccccccccc
Confidence            44567788887776554444566777777777777776653 22 23556777777777765 44455556666777777


Q ss_pred             eeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcc
Q 045938          499 EISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPE  578 (681)
Q Consensus       499 ~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~  578 (681)
                      +++++......+..+..+.+++.|++++|......+..+..+                 ++|+.+++++|  .+..++.+
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l-----------------~~l~~l~l~~N--~l~~~~~~  166 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-----------------PKLEKLSLANN--NLTELPAG  166 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-----------------TTCCEEECTTS--CCSCCCTT
T ss_pred             cccccccceeeccccccccccccccccccccceecccccccc-----------------ccchhcccccc--cccccCcc
Confidence            777766544444455666777777777765443333333444                 44555555554  34444433


Q ss_pred             ccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCC
Q 045938          579 DIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCP  625 (681)
Q Consensus       579 ~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~  625 (681)
                      .+      ..+++|++|+++++ +++++|.++..+++|+.|++++||
T Consensus       167 ~~------~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         167 LL------NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TT------TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cc------ccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            22      23455555555553 466666666666667777776664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.4e-15  Score=146.02  Aligned_cols=130  Identities=17%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecC-CCCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFP-QGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~  501 (681)
                      |++|++++|......+..+...++|+.+++++|.+....+..+..+++|+.|++++|. +..++ ..+..+++|++++++
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhh
Confidence            6666666665443334445566666777777666665555566667777777777765 33343 344566777777777


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      +|......|..+..+++|+.|++++|...+..+..++.+++|++|++++|..
T Consensus       186 ~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            7776665566777777777777777776665555566666677777666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.8e-15  Score=144.86  Aligned_cols=197  Identities=16%  Similarity=0.152  Sum_probs=130.6

Q ss_pred             cccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcccCC-CCCCCCCCcceEEEeCCCCceeecCCC
Q 045938          231 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVKLP-QSPLSLSSLREIEIYGCSSLVSFPEVA  309 (681)
Q Consensus       231 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~l~~~~~~~  309 (681)
                      ...+.+.+.++. +++++|..           +++++++|+|++|.+ ..+| ..+.++++|++|++++|. ++.++..+
T Consensus         9 ~~~~~~v~C~~~-~L~~iP~~-----------lp~~l~~L~Ls~N~i-~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~   74 (266)
T d1p9ag_           9 VASHLEVNCDKR-NLTALPPD-----------LPKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAE-LTKLQVDG   74 (266)
T ss_dssp             STTCCEEECTTS-CCSSCCSC-----------CCTTCCEEECTTSCC-SEEEGGGGTTCTTCCEEECTTSC-CCEEECCS
T ss_pred             cCCCeEEEccCC-CCCeeCcC-----------cCcCCCEEECcCCcC-CCcCHHHhhcccccccccccccc-cccccccc
Confidence            344444555443 56777653           346789999998877 4444 567889999999999874 78888777


Q ss_pred             CCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCCceeEEEecccccccccccccCCCCcce
Q 045938          310 LPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEG  389 (681)
Q Consensus       310 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~  389 (681)
                      .+++|++|++++|. +...+..+  ..+++|+.|+++++. +..++...                               
T Consensus        75 ~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~L~~L~l~~~~-~~~~~~~~-------------------------------  119 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQ-LQSLPLLG--QTLPALTVLDVSFNR-LTSLPLGA-------------------------------  119 (266)
T ss_dssp             CCTTCCEEECCSSC-CSSCCCCT--TTCTTCCEEECCSSC-CCCCCSST-------------------------------
T ss_pred             cccccccccccccc-cccccccc--ccccccccccccccc-cceeeccc-------------------------------
Confidence            88899999998886 55555544  667777777776642 21111000                               


Q ss_pred             eeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcc
Q 045938          390 LHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLR  469 (681)
Q Consensus       390 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~  469 (681)
                                                ...++ ++++|++++|......+..+..+++++.+++++|.+....+..++.++
T Consensus       120 --------------------------~~~l~-~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_         120 --------------------------LRGLG-ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (266)
T ss_dssp             --------------------------TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             --------------------------ccccc-ccccccccccccceeccccccccccchhcccccccccccCcccccccc
Confidence                                      12222 277777777755444444556677777777777777666666667777


Q ss_pred             cccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938          470 QLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK  504 (681)
Q Consensus       470 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~  504 (681)
                      +|++|++++|. +..+|.+++.+++|+.|++++|+
T Consensus       173 ~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         173 NLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccceeecccCC-CcccChhHCCCCCCCEEEecCCC
Confidence            77777777766 44677767777777777777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.2e-15  Score=144.97  Aligned_cols=151  Identities=15%  Similarity=0.139  Sum_probs=110.0

Q ss_pred             CCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcc
Q 045938          418 NLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLT  496 (681)
Q Consensus       418 ~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~  496 (681)
                      .+|+++++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+..++.+.+..+..+..++. .+..+++|+
T Consensus        29 ~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCC
Confidence            3556799999999876554445688999999999999988877777777888888888876666666643 566788899


Q ss_pred             eEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc-------cccCCcccEEEEecc
Q 045938          497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK-------IWKFSSLRQLTISGC  568 (681)
Q Consensus       497 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~l~~L~~L~l~~~  568 (681)
                      +|++++|......+..+...++|+.+++++|......+..+..+++|++|++++|..       +.++++|+.+++.+|
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            999999886554555667788899999988876554455566777777777776654       224555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=6.6e-13  Score=134.58  Aligned_cols=298  Identities=24%  Similarity=0.236  Sum_probs=194.4

Q ss_pred             CCccEEeeeCCcCcccCCCCCCCCCCcceEEEeCCCCceeecCCCCCCCceEEEEecCCCCCccccccccCCCCccceee
Q 045938          265 CILEYIDLRDCQDLVKLPQSPLSLSSLREIEIYGCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILE  344 (681)
Q Consensus       265 ~~L~~L~l~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~  344 (681)
                      .++++|+++++.. +.+|+   ..++|++|++++| .++.+|..  +.+|++|++++|. +..++..     .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L-~~lp~---~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~l~~n~-l~~l~~l-----p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGL-SSLPE---LPPHLESLVASCN-SLTELPEL--PQSLKSLLVDNNN-LKALSDL-----PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCC-SCCCS---CCTTCSEEECCSS-CCSSCCCC--CTTCCEEECCSSC-CSCCCSC-----CTTCCEEE
T ss_pred             cCCCEEEeCCCCC-CCCCC---CCCCCCEEECCCC-CCcccccc--hhhhhhhhhhhcc-cchhhhh-----cccccccc
Confidence            5799999999875 77886   3578999999976 58888754  6799999999976 5555532     24699999


Q ss_pred             eccCCCccccccccCCCCceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCc
Q 045938          345 IWICNSLTYIAGVQLPPSLKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLK  424 (681)
Q Consensus       345 l~~c~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~  424 (681)
                      ++++ .++.++....                        .++|++|+++++.. ..               .......+.
T Consensus       105 L~~n-~l~~lp~~~~------------------------l~~L~~L~l~~~~~-~~---------------~~~~~~~l~  143 (353)
T d1jl5a_         105 VSNN-QLEKLPELQN------------------------SSFLKIIDVDNNSL-KK---------------LPDLPPSLE  143 (353)
T ss_dssp             CCSS-CCSSCCCCTT------------------------CTTCCEEECCSSCC-SC---------------CCCCCTTCC
T ss_pred             cccc-ccccccchhh------------------------hccceeeccccccc-cc---------------ccccccccc
Confidence            9874 5666553221                        23588888877532 22               112223477


Q ss_pred             EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938          425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK  504 (681)
Q Consensus       425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~  504 (681)
                      .+.+..+....  ...+..++.++.+.+++|...... ..   ....+.+...... +..++. ...++.|+.+++++|.
T Consensus       144 ~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~-~~---~~~~~~l~~~~~~-~~~~~~-~~~l~~L~~l~l~~n~  215 (353)
T d1jl5a_         144 FIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLP-DL---PLSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNL  215 (353)
T ss_dssp             EEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCC-CC---CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSC
T ss_pred             chhhccccccc--cccccccccceecccccccccccc-cc---ccccccccccccc-cccccc-cccccccccccccccc
Confidence            78777665433  234677888899998888765422 11   2233445554333 444443 5567889999998876


Q ss_pred             ccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc--cccC-CcccEEEEeccCCCCcCCCccccc
Q 045938          505 RLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK--IWKF-SSLRQLTISGCDDDMVSFPPEDIR  581 (681)
Q Consensus       505 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~l-~~L~~L~l~~~~~~~~~l~~~~~~  581 (681)
                      . ..++.   ...++..+.+.++.....    ....+++...++..+..  +..+ ......++..+  .+..++     
T Consensus       216 ~-~~~~~---~~~~l~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~-----  280 (353)
T d1jl5a_         216 L-KTLPD---LPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN--EIRSLC-----  280 (353)
T ss_dssp             C-SSCCS---CCTTCCEEECCSSCCSCC----CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS--CCSEEC-----
T ss_pred             c-ccccc---cccccccccccccccccc----ccccccccccccccccccccccccchhcccccccC--cccccc-----
Confidence            3 33433   345677777777654332    22345566666655443  2222 23344455443  333333     


Q ss_pred             cccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCCchhHHh
Q 045938          582 LRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGGCPLIAE  652 (681)
Q Consensus       582 ~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~  652 (681)
                           ..+++|++|++++| +++.+|..   +++|+.|++++| +++.+|.  .+++|++|++++|+ +++
T Consensus       281 -----~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         281 -----DLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LRE  338 (353)
T ss_dssp             -----CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSS
T ss_pred             -----ccCCCCCEEECCCC-ccCccccc---cCCCCEEECCCC-cCCcccc--ccCCCCEEECcCCc-CCC
Confidence                 25689999999997 78888853   689999999998 7889986  57899999999997 554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=3.3e-13  Score=127.57  Aligned_cols=184  Identities=16%  Similarity=0.226  Sum_probs=97.5

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      |+.|++.+|.+.+ + ..+..+++|++|++++|.+.+..+  +..+++++.+++++|. .+.++ .+..+++|+.+++++
T Consensus        43 L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          43 ITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             CCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTT
T ss_pred             cCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc-ccccc-ccccccccccccccc
Confidence            6666666664332 3 235566666666666665544222  4555666666666554 22333 234455566666655


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL  582 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~  582 (681)
                      |.....  ..+...+.++.+.++++...... + +.                 ++++|++|++++|  .+...+. .   
T Consensus       117 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~-~~-----------------~~~~L~~L~l~~n--~~~~~~~-l---  169 (227)
T d1h6ua2         117 TQITDV--TPLAGLSNLQVLYLDLNQITNIS-P-LA-----------------GLTNLQYLSIGNA--QVSDLTP-L---  169 (227)
T ss_dssp             SCCCCC--GGGTTCTTCCEEECCSSCCCCCG-G-GG-----------------GCTTCCEEECCSS--CCCCCGG-G---
T ss_pred             cccccc--chhccccchhhhhchhhhhchhh-h-hc-----------------ccccccccccccc--ccccchh-h---
Confidence            543221  12334455555555544432221 1 33                 3444555555443  2222221 0   


Q ss_pred             ccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeCC
Q 045938          583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIGG  646 (681)
Q Consensus       583 ~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~  646 (681)
                          ..+++|++|+++++ +++.++. +..+++|++|++++| +++.+++.+.+++|++|++++
T Consensus       170 ----~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         170 ----ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             ----TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             ----cccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence                23455666666654 5555543 667778888888887 577777656677788877753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=7.3e-13  Score=125.08  Aligned_cols=186  Identities=19%  Similarity=0.173  Sum_probs=130.6

Q ss_pred             CCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCc
Q 045938          385 SLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSG  464 (681)
Q Consensus       385 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~  464 (681)
                      .+|++|++.++ +++++-.            +..++. |++|++++|.+.+..  .+..+++++.+++++|....  ...
T Consensus        41 ~~L~~L~l~~~-~i~~l~~------------l~~l~~-L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~--i~~  102 (227)
T d1h6ua2          41 DGITTLSAFGT-GVTTIEG------------VQYLNN-LIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN--VSA  102 (227)
T ss_dssp             HTCCEEECTTS-CCCCCTT------------GGGCTT-CCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC--CGG
T ss_pred             CCcCEEECCCC-CCCcchh------------HhcCCC-CcEeecCCceeeccc--cccccccccccccccccccc--ccc
Confidence            48999999986 3554211            555666 999999999766543  38999999999999998764  235


Q ss_pred             CcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCc
Q 045938          465 LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLH  544 (681)
Q Consensus       465 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  544 (681)
                      +.++++|+.+.++++.... ++ .+...+.++.+.+..+.....  ..+..+++|+.|.+++|.... .++ ++.+++|+
T Consensus       103 l~~l~~L~~l~l~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~-~~~-l~~l~~L~  176 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLT  176 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred             ccccccccccccccccccc-cc-hhccccchhhhhchhhhhchh--hhhcccccccccccccccccc-chh-hcccccce
Confidence            7789999999999887543 22 244567899999988775432  246778999999999987543 333 55555555


Q ss_pred             eeeeecCcccccCCcccEEEEeccCCCCcCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecC
Q 045938          545 RLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELED  623 (681)
Q Consensus       545 ~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~  623 (681)
                      +|++++|+                   +.+++.-        ..+++|++|+++++ +++.++. +.++++|+.|++++
T Consensus       177 ~L~Ls~n~-------------------l~~l~~l--------~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         177 TLKADDNK-------------------ISDISPL--------ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECCSSC-------------------CCCCGGG--------GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             ecccCCCc-------------------cCCChhh--------cCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            55555543                   3333321        24566777777776 6777763 77889999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.1e-12  Score=119.97  Aligned_cols=79  Identities=13%  Similarity=0.037  Sum_probs=45.1

Q ss_pred             cccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccc-cCcccCCcceeeecccCCCCCccccCCCCCCCceeee
Q 045938          470 QLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPK-GLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEI  548 (681)
Q Consensus       470 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  548 (681)
                      .++.++++++. +..++...+..++++++....+..+..+|. .+.++++|++|++++|......+..+..+++|+.+++
T Consensus       154 ~l~~L~l~~n~-l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNG-IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSC-CCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeeccccc-ccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            56667776655 445665555556666665544444555554 3566777777777777644322223444455555444


Q ss_pred             e
Q 045938          549 I  549 (681)
Q Consensus       549 ~  549 (681)
                      .
T Consensus       233 ~  233 (242)
T d1xwdc1         233 Y  233 (242)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.39  E-value=6.8e-13  Score=123.45  Aligned_cols=35  Identities=17%  Similarity=0.089  Sum_probs=21.2

Q ss_pred             ccCCCCCCEEeecCCCCCcccCCCCCcccccEEEeC
Q 045938          610 IVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQLYIG  645 (681)
Q Consensus       610 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~  645 (681)
                      +..+++|++|++++| .++.++...-+++|++|+++
T Consensus       174 l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEE
T ss_pred             ccCCCCCCEEECCCC-CCCCChhhcCCCCCCEEEcc
Confidence            455666666666665 45666554445666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.9e-13  Score=133.68  Aligned_cols=202  Identities=16%  Similarity=0.168  Sum_probs=123.6

Q ss_pred             CCCCCcceEEEeCCCCcee--ec-CCCCCCCceEEEEecCCCCCccccccccCCCCccceeeeccCCCccccccccCCCC
Q 045938          286 LSLSSLREIEIYGCSSLVS--FP-EVALPSKLKKIEIRECDALKSLPEAWMCDTNSSLEILEIWICNSLTYIAGVQLPPS  362 (681)
Q Consensus       286 ~~l~~L~~L~L~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  362 (681)
                      ....+|++|++++|. +..  +. ....+++|++|++++|..-......+  ..+++|+.|++++|..+++..-....  
T Consensus        43 ~~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~Ls~c~~itd~~l~~l~--  117 (284)
T d2astb2          43 FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLL--  117 (284)
T ss_dssp             CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHH--
T ss_pred             ccCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccCCCcHHHHHH--hcCCCCcCccccccccccccccchhh--
Confidence            355688888888765 332  11 23457888888888886322233333  56788888888888777643211111  


Q ss_pred             ceeEEEecccccccccccccCCCCcceeeeccCCCcccccccCCcchhhhhcccCCCCCCCcEEEEcCCCC--chh-HHH
Q 045938          363 LKWTLTVEEGIQSSSSSRRYTSSLLEGLHISRCPSLTCIFSKNELPATLESLEVGNLPPSLKSLDVWSCSE--LES-IAE  439 (681)
Q Consensus       363 l~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~--~~~-~~~  439 (681)
                                         ..+++|++|++++|.++++        .++... +...++.|+.|++++|..  .+. +..
T Consensus       118 -------------------~~~~~L~~L~ls~c~~~~~--------~~~~~~-~~~~~~~L~~L~l~~~~~~i~~~~l~~  169 (284)
T d2astb2         118 -------------------SSCSRLDELNLSWCFDFTE--------KHVQVA-VAHVSETITQLNLSGYRKNLQKSDLST  169 (284)
T ss_dssp             -------------------HHCTTCCEEECCCCTTCCH--------HHHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             -------------------HHHHhcccccccccccccc--------ccchhh-hcccccccchhhhcccccccccccccc
Confidence                               1134688888888877765        111111 223334599999988742  222 333


Q ss_pred             hcccCCCccEEEeecccC-cccccCcCcCcccccEEeeccCCCcee-cCCCCCCCCCcceEeeccccccccccccCcccC
Q 045938          440 RLDNNTSLETISISECEN-LKILPSGLHNLRQLQEIGIWECENLVS-FPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLT  517 (681)
Q Consensus       440 ~l~~l~~L~~L~ls~~~~-~~~~~~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~  517 (681)
                      ...++++|++|++++|.. .+.....+..+++|++|++++|..+.+ ....+..+|+|+.|++++|-....+......++
T Consensus       170 l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp  249 (284)
T d2astb2         170 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP  249 (284)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHST
T ss_pred             cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCc
Confidence            446788999999988764 445566677888999999998876642 222355678888998888732222222223455


Q ss_pred             Ccc
Q 045938          518 SLQ  520 (681)
Q Consensus       518 ~L~  520 (681)
                      +|+
T Consensus       250 ~L~  252 (284)
T d2astb2         250 HLQ  252 (284)
T ss_dssp             TSE
T ss_pred             ccc
Confidence            544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-13  Score=134.96  Aligned_cols=175  Identities=14%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             ccCCCccEEEeecccCccc-ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccccccc--ccccCcccCC
Q 045938          442 DNNTSLETISISECENLKI-LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQV--LPKGLHNLTS  518 (681)
Q Consensus       442 ~~l~~L~~L~ls~~~~~~~-~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~l~~l~~  518 (681)
                      ....+|++|++++|.+... +...+.++++|++|++++|.........+..+++|++|++++|..+..  +......+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            4556778888877766533 333456677888888887764333333344567788888887765432  2222345677


Q ss_pred             cceeeecccCCCCC--cccc-CCCCCCCceeeeecCcc----------cccCCcccEEEEeccCCCCcC-CCcccccccc
Q 045938          519 LQQLTIGEGGELPS--LEED-DGLPTNLHRLEIIDNKK----------IWKFSSLRQLTISGCDDDMVS-FPPEDIRLRT  584 (681)
Q Consensus       519 L~~L~l~~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~----------~~~l~~L~~L~l~~~~~~~~~-l~~~~~~~~~  584 (681)
                      |++|++++|....+  +... ...+++|+.|++++|..          ..++++|++|++++|. .+.+ ....      
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~-~itd~~~~~------  195 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-MLKNDCFQE------  195 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-TCCGGGGGG------
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccccc-CCCchhhhh------
Confidence            88888877765432  1111 22346777777776532          2256777777777642 2221 1111      


Q ss_pred             CCCcccccceeEecccCCcccc-cccccCCCCCCEEeecCC
Q 045938          585 TLPLPACLASLMIGNFPNLERL-SSSIVDLQNLTHLELEDC  624 (681)
Q Consensus       585 ~~~~~~~L~~l~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c  624 (681)
                       ....++|++|++++|+.+..- ...+.++|+|+.|++++|
T Consensus       196 -l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 -FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             -GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             -hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             123456777777776655422 124556677777777666

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=2.1e-12  Score=118.97  Aligned_cols=32  Identities=19%  Similarity=0.273  Sum_probs=17.3

Q ss_pred             ccCCCCCCEEeecCCCCCcccCCCCCcccccEE
Q 045938          610 IVDLQNLTHLELEDCPKLKYFPEKGLPSSLLQL  642 (681)
Q Consensus       610 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L  642 (681)
                      +..+++|++|++++| +++.++..+-+++|++|
T Consensus       168 l~~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSN-KVSDISVLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCC-CCCCCccccCCCCCCcC
Confidence            445566666666665 45555543334555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=3.1e-12  Score=118.91  Aligned_cols=162  Identities=17%  Similarity=0.176  Sum_probs=85.9

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      +++|++++|..... + .+..+++|++|++++|.+.+..  .++.+++|+.|++++|. +..++ .+..+++|+.|++++
T Consensus        48 L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          48 IDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             CCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTT
T ss_pred             ccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc-ccccc-ccccccccccccccc
Confidence            66666666544322 1 2455666666666666554422  24455666666666554 33444 244455666666665


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCCcCCCcccccc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDMVSFPPEDIRL  582 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~  582 (681)
                      |... .+ ..+..+++++.+++++|.... .+. ++                 .+++|+.+++++|  .+..++. .   
T Consensus       122 ~~~~-~~-~~l~~l~~l~~l~~~~n~l~~-~~~-~~-----------------~l~~L~~l~l~~n--~l~~i~~-l---  174 (210)
T d1h6ta2         122 NGIS-DI-NGLVHLPQLESLYLGNNKITD-ITV-LS-----------------RLTKLDTLSLEDN--QISDIVP-L---  174 (210)
T ss_dssp             SCCC-CC-GGGGGCTTCCEEECCSSCCCC-CGG-GG-----------------GCTTCSEEECCSS--CCCCCGG-G---
T ss_pred             cccc-cc-ccccccccccccccccccccc-ccc-cc-----------------ccccccccccccc--ccccccc-c---
Confidence            5532 22 234455556666665554322 111 23                 3445555555554  3333332 1   


Q ss_pred             ccCCCcccccceeEecccCCcccccccccCCCCCCEEeecC
Q 045938          583 RTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELED  623 (681)
Q Consensus       583 ~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~  623 (681)
                          ..+++|++|+++++ .++.++ .+..+++|++|++++
T Consensus       175 ----~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 ----AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred             ----cCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence                24556666666664 566665 477788888888864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.8e-11  Score=114.28  Aligned_cols=83  Identities=16%  Similarity=0.059  Sum_probs=52.4

Q ss_pred             cCCccEEeeeCCcCcccCCC-CCCCCCCcceEEEeCCCCceeecCC--CCCCCceEEEEecCCCCCccccccccCCCCcc
Q 045938          264 SCILEYIDLRDCQDLVKLPQ-SPLSLSSLREIEIYGCSSLVSFPEV--ALPSKLKKIEIRECDALKSLPEAWMCDTNSSL  340 (681)
Q Consensus       264 ~~~L~~L~l~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L  340 (681)
                      ++++++|++++|.. ..+|. .+.++++|++|++++|.....++..  ..+++++++.+..+..+...+...+ ..+++|
T Consensus        28 ~~~l~~L~Ls~n~i-~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~-~~l~~L  105 (242)
T d1xwdc1          28 PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNL  105 (242)
T ss_dssp             CSCCSEEEEESCCC-CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE-ECCTTC
T ss_pred             CCCCCEEECcCCcC-CccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc-cccccc
Confidence            35677777777765 45544 4667777777777777654444433  2366777777766655655554433 566777


Q ss_pred             ceeeeccC
Q 045938          341 EILEIWIC  348 (681)
Q Consensus       341 ~~L~l~~c  348 (681)
                      +.+++.++
T Consensus       106 ~~l~l~~~  113 (242)
T d1xwdc1         106 QYLLISNT  113 (242)
T ss_dssp             CEEEEESC
T ss_pred             cccccchh
Confidence            77777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=1.2e-11  Score=113.79  Aligned_cols=120  Identities=21%  Similarity=0.221  Sum_probs=68.9

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecc
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISY  502 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~  502 (681)
                      +++|++++|...+ + ..+..+++|++|++++|.+.+..+  ++++++|++|++++|.. ..++ .+..++.|+.+++++
T Consensus        42 l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          42 VTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             CCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECCS
T ss_pred             CCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc-cccc-ccccccccccccccc
Confidence            6677777665433 2 235566777777777776554322  56667777777776653 2333 245566777777766


Q ss_pred             ccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCc
Q 045938          503 CKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       503 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      |.... . ..+..+++|+.|++++|.. ..++. +..+++|++|++.+|+
T Consensus       116 ~~~~~-~-~~~~~l~~L~~L~l~~n~l-~~~~~-l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         116 NQITD-I-DPLKNLTNLNRLELSSNTI-SDISA-LSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             SCCCC-C-GGGTTCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSC
T ss_pred             ccccc-c-cccchhhhhHHhhhhhhhh-ccccc-cccccccccccccccc
Confidence            65432 2 2355666777777766653 23332 5555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.3e-11  Score=129.70  Aligned_cols=110  Identities=13%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             CcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCcc----c
Q 045938          205 KLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLV----K  280 (681)
Q Consensus       205 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~----~  280 (681)
                      +|++|++.+......   .....+..++++++|++++| .+++-..    ..+.......++|++|++++|....    .
T Consensus         3 ~l~~ld~~~~~i~~~---~~~~l~~~l~~l~~L~L~~~-~i~~~~~----~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDC-GLTEARC----KDISSALRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCCCCHH---HHHHHHHHHTTCSEEEEESS-CCCHHHH----HHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCCcCChH---HHHHHHHhCCCCCEEEeCCC-CCCHHHH----HHHHHHHhcCCCCCEEECcCCcCChHHHHH
Confidence            466666655443332   12234456677777777777 3443111    1122222344667777777665421    1


Q ss_pred             CCCCCC-CCCCcceEEEeCCCCceeec------CCCCCCCceEEEEecCC
Q 045938          281 LPQSPL-SLSSLREIEIYGCSSLVSFP------EVALPSKLKKIEIRECD  323 (681)
Q Consensus       281 l~~~~~-~l~~L~~L~L~~~~~l~~~~------~~~~~~~L~~L~l~~~~  323 (681)
                      +...+. ...+|++|++++|. +++..      ....+++|++|++++|.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            222222 23457777777664 44321      13345667777766654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2e-11  Score=128.21  Aligned_cols=95  Identities=18%  Similarity=0.193  Sum_probs=63.1

Q ss_pred             CCCCcceEeecccCCceeeeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc-
Q 045938          202 RIPKLEELEINDMKEQTYIWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK-  280 (681)
Q Consensus       202 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-  280 (681)
                      .++++++|.+.+|......+......+..+++|++|+++++ .+++...   ......+....++|++|++++|..... 
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~---~~l~~~l~~~~~~L~~L~L~~n~it~~~  100 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAG  100 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHH---HHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHH---HHHHHHHhcCCCCCCEEECCCCCccccc
Confidence            57889999999996332212222344578999999999987 4543111   111222222345899999999976332 


Q ss_pred             ---CCCCCCCCCCcceEEEeCCC
Q 045938          281 ---LPQSPLSLSSLREIEIYGCS  300 (681)
Q Consensus       281 ---l~~~~~~l~~L~~L~L~~~~  300 (681)
                         ++..+..+++|++|++++|.
T Consensus       101 ~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         101 CGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cccccchhhcccccccccccccc
Confidence               45567789999999999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=4.4e-10  Score=102.35  Aligned_cols=109  Identities=16%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             CCCCCcEEEEcCCCCchhH-HHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcc
Q 045938          419 LPPSLKSLDVWSCSELESI-AERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLT  496 (681)
Q Consensus       419 ~p~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~  496 (681)
                      +|+++++|++++|.+...+ +..+..+++|++|++++|.+....+..+..+++|++|++++|. +..++. .+..+++|+
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCC
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCccc
Confidence            3344666666666554322 2334555555555555555555555555555555555555554 223332 334455555


Q ss_pred             eEeeccccccccccccCcccCCcceeeecccC
Q 045938          497 RLEISYCKRLQVLPKGLHNLTSLQQLTIGEGG  528 (681)
Q Consensus       497 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~  528 (681)
                      +|++++|......+..+..+++|++|++++|+
T Consensus       106 ~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccCCccccccCHHHhcCCcccccccccccc
Confidence            55555554333223334445555555555444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.3e-10  Score=100.70  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=35.7

Q ss_pred             cCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccccccccccc-CcccCCcce
Q 045938          443 NNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKG-LHNLTSLQQ  521 (681)
Q Consensus       443 ~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-l~~l~~L~~  521 (681)
                      +..++++|++++|.+... +..+..+++|+.|++++|. +..++ ++..+++|++|++++|.. ..++.. +..+++|+.
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCC-CCccC-CcccCcchhhhhcccccc-cCCCcccccccccccc
Confidence            334444444444444322 2223334455555555444 23332 234445555555555542 223222 234455555


Q ss_pred             eeecccC
Q 045938          522 LTIGEGG  528 (681)
Q Consensus       522 L~l~~~~  528 (681)
                      |++++|.
T Consensus        92 L~L~~N~   98 (162)
T d1a9na_          92 LILTNNS   98 (162)
T ss_dssp             EECCSCC
T ss_pred             ceecccc
Confidence            5555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=1e-09  Score=99.91  Aligned_cols=128  Identities=13%  Similarity=0.072  Sum_probs=99.9

Q ss_pred             CcEEEEcCCCCchhHHHhcccCCCccEEEeecccCccc-ccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          423 LKSLDVWSCSELESIAERLDNNTSLETISISECENLKI-LPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~-~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      .++++.+++. +..+|..+.  +++++|++++|.+... .+..++++++|+.|++++|......+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~-L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRG-LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSC-CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCC-cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3455665553 334554442  6899999999999754 45567889999999999988665556677778999999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  553 (681)
                      +|......+..+..+++|++|++++|......+..+..+++|++|+|++|..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            9986555555788899999999999987666666788999999999999876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=4.2e-10  Score=93.95  Aligned_cols=98  Identities=16%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             EEEEcCCCCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeecccc
Q 045938          425 SLDVWSCSELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCK  504 (681)
Q Consensus       425 ~L~l~~~~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~  504 (681)
                      .|++++|... .++ .+.++++|++|++++|.+.+ +|..++.+++|+.|++++|. ++.++ ++..+++|+.|++++|.
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc
Confidence            4555555433 222 24555555555555554432 33344555555555555544 23333 23444555555555544


Q ss_pred             cccccc--ccCcccCCcceeeecccC
Q 045938          505 RLQVLP--KGLHNLTSLQQLTIGEGG  528 (681)
Q Consensus       505 ~l~~~~--~~l~~l~~L~~L~l~~~~  528 (681)
                      .. .++  ..+..+++|+.|++++|+
T Consensus        77 i~-~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          77 LQ-QSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CC-SSSTTGGGGGCTTCCEEECTTSG
T ss_pred             cC-CCCCchhhcCCCCCCEEECCCCc
Confidence            22 222  123444455555554444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.6e-10  Score=99.42  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             CcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeecccCCCCCccccCCCCCCCc
Q 045938          465 LHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLH  544 (681)
Q Consensus       465 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  544 (681)
                      +.+..++++|++++|. +..++.....+++|+.|++++|.. ..+ ..+..+++|++|++++|......+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~i-~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI-RKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCC-CEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCCC-Ccc-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4456778888888876 556665445677888888888864 445 3467788888888888875433233234456666


Q ss_pred             eeeeecCcc
Q 045938          545 RLEIIDNKK  553 (681)
Q Consensus       545 ~L~l~~~~~  553 (681)
                      +|++++|++
T Consensus        91 ~L~L~~N~i   99 (162)
T d1a9na_          91 ELILTNNSL   99 (162)
T ss_dssp             EEECCSCCC
T ss_pred             cceeccccc
Confidence            666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.4e-09  Score=89.20  Aligned_cols=78  Identities=17%  Similarity=0.159  Sum_probs=53.9

Q ss_pred             cEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeeccccccccccccCcccCCcceeeeccc
Q 045938          448 ETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGEG  527 (681)
Q Consensus       448 ~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~  527 (681)
                      |+|++++|.+... + .++++++|++|++++|. +..+|..+..+++|+.|++++|.. ..+| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCc-cCcchhhhhhhhcccccccccccc-cccC-ccccccccCeEECCCC
Confidence            5677888777642 3 46777788888888776 456766666777788888887764 4454 3667777777777777


Q ss_pred             CCC
Q 045938          528 GEL  530 (681)
Q Consensus       528 ~~~  530 (681)
                      ...
T Consensus        76 ~i~   78 (124)
T d1dcea3          76 RLQ   78 (124)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.70  E-value=2.1e-10  Score=104.73  Aligned_cols=125  Identities=15%  Similarity=0.193  Sum_probs=91.7

Q ss_pred             CcEEEEcCC-CCchhHHHhcccCCCccEEEeecccCcccccCcCcCcccccEEeeccCCCceecCCCCCCCCCcceEeec
Q 045938          423 LKSLDVWSC-SELESIAERLDNNTSLETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQGGLPCAKLTRLEIS  501 (681)
Q Consensus       423 L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~  501 (681)
                      ++.+++.+. ...+.++..+..+++|++|++++|.+.. ++ .+.++++|+.|++++|. +..++.....+++|+.|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccc-cccccccccccccccccccc
Confidence            556666543 2244456678889999999999998764 33 57889999999999886 55666433445689999999


Q ss_pred             cccccccccccCcccCCcceeeecccCCCCCcc--ccCCCCCCCceeeeecCcc
Q 045938          502 YCKRLQVLPKGLHNLTSLQQLTIGEGGELPSLE--EDDGLPTNLHRLEIIDNKK  553 (681)
Q Consensus       502 ~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~  553 (681)
                      +|.. ..++ .+..+++|+.|++++|.... ++  ..++.+++|+.|++++|+.
T Consensus       102 ~N~i-~~l~-~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         102 YNQI-ASLS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEC-CCHH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccc-cccc-cccccccccccccccchhcc-ccccccccCCCccceeecCCCcc
Confidence            9874 4443 46788999999999987543 32  3477888888888888865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.56  E-value=6.5e-09  Score=104.12  Aligned_cols=146  Identities=16%  Similarity=0.136  Sum_probs=74.3

Q ss_pred             CcEEEEcCCCCc----------hhHHHhcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCcee----
Q 045938          423 LKSLDVWSCSEL----------ESIAERLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENLVS----  484 (681)
Q Consensus       423 L~~L~l~~~~~~----------~~~~~~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~----  484 (681)
                      |+.++++++...          ..+...+..+++|++|++++|.+...    +...+...++|++|++++|.....    
T Consensus        61 L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~  140 (344)
T d2ca6a1          61 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK  140 (344)
T ss_dssp             CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH
T ss_pred             CCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccccc
Confidence            777777655321          01223345566777777777665432    222334456677777776652110    


Q ss_pred             cCC---------CCCCCCCcceEeeccccccc----cccccCcccCCcceeeecccCCCCC-----ccccCCCCCCCcee
Q 045938          485 FPQ---------GGLPCAKLTRLEISYCKRLQ----VLPKGLHNLTSLQQLTIGEGGELPS-----LEEDDGLPTNLHRL  546 (681)
Q Consensus       485 l~~---------~~~~~~~L~~L~l~~~~~l~----~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L  546 (681)
                      +..         .....+.|+.++++++....    .+...+..+++|+.|++++|.....     +...+..+++|+.|
T Consensus       141 l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L  220 (344)
T d2ca6a1         141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL  220 (344)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred             ccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccc
Confidence            000         01123466666666654321    1222334556677777766654321     12224455666666


Q ss_pred             eeecCcc-----------cccCCcccEEEEecc
Q 045938          547 EIIDNKK-----------IWKFSSLRQLTISGC  568 (681)
Q Consensus       547 ~l~~~~~-----------~~~l~~L~~L~l~~~  568 (681)
                      ++++|..           +..+++|++|++++|
T Consensus       221 ~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         221 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             ccccccccccccccccccccccccchhhhhhcC
Confidence            6666654           235556666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.53  E-value=9.2e-09  Score=102.97  Aligned_cols=146  Identities=16%  Similarity=0.134  Sum_probs=84.8

Q ss_pred             CcEEEEcCCCCchhHHH-------------hcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCCCcee-
Q 045938          423 LKSLDVWSCSELESIAE-------------RLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECENLVS-  484 (681)
Q Consensus       423 L~~L~l~~~~~~~~~~~-------------~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~-  484 (681)
                      |++|++++|.+......             .....+.|+.+.+++|.+...    +...+...+.|+.|++++|..... 
T Consensus       123 L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g  202 (344)
T d2ca6a1         123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG  202 (344)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred             chheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccc
Confidence            77777777654322110             123456677777777655422    222334456777777777653221 


Q ss_pred             ----cCCCCCCCCCcceEeecccccccc----ccccCcccCCcceeeecccCCCCC----ccccCC--CCCCCceeeeec
Q 045938          485 ----FPQGGLPCAKLTRLEISYCKRLQV----LPKGLHNLTSLQQLTIGEGGELPS----LEEDDG--LPTNLHRLEIID  550 (681)
Q Consensus       485 ----l~~~~~~~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~  550 (681)
                          +...+..+++|+.|++++|.....    +...+..+++|++|++++|.....    +...+.  ..+.|++|++++
T Consensus       203 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~  282 (344)
T d2ca6a1         203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY  282 (344)
T ss_dssp             HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             cccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCC
Confidence                233455567778888877764321    333556677788888887764332    111122  235688888888


Q ss_pred             Ccc-----------c-ccCCcccEEEEecc
Q 045938          551 NKK-----------I-WKFSSLRQLTISGC  568 (681)
Q Consensus       551 ~~~-----------~-~~l~~L~~L~l~~~  568 (681)
                      |.+           + .+.++|+.|++++|
T Consensus       283 N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         283 NEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            875           1 15678888888886

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.48  E-value=2e-09  Score=98.00  Aligned_cols=128  Identities=20%  Similarity=0.252  Sum_probs=67.8

Q ss_pred             CcceEeeccc-cccccccccCcccCCcceeeecccCCCCCccccCCCCCCCceeeeecCcccccCCcccEEEEeccCCCC
Q 045938          494 KLTRLEISYC-KRLQVLPKGLHNLTSLQQLTIGEGGELPSLEEDDGLPTNLHRLEIIDNKKIWKFSSLRQLTISGCDDDM  572 (681)
Q Consensus       494 ~L~~L~l~~~-~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~L~~L~l~~~~~~~  572 (681)
                      .++.+++.+. +.+..++..+..+++|++|++++|.. ..++. ++.+++|++|++++|.                   +
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I-~~i~~-l~~l~~L~~L~Ls~N~-------------------i   82 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKISS-LSGMENLRILSLGRNL-------------------I   82 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEE-SCCCC-HHHHTTCCEEECCEEE-------------------E
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCC-CCccc-ccCCccccChhhcccc-------------------c
Confidence            3444555442 22344455666777778888777753 33433 4444555555555443                   3


Q ss_pred             cCCCccccccccCCCcccccceeEecccCCcccccccccCCCCCCEEeecCCCCCcccCC---CCCcccccEEEeCCchh
Q 045938          573 VSFPPEDIRLRTTLPLPACLASLMIGNFPNLERLSSSIVDLQNLTHLELEDCPKLKYFPE---KGLPSSLLQLYIGGCPL  649 (681)
Q Consensus       573 ~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~~  649 (681)
                      ..++...       ..+++|+.|+++++ .++.++ .+..+++|+.|++++| .++.++.   ...+++|++|++++||.
T Consensus        83 ~~i~~~~-------~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          83 KKIENLD-------AVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             CSCSSHH-------HHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccc-------cccccccccccccc-cccccc-cccccccccccccccc-hhccccccccccCCCccceeecCCCcc
Confidence            3443322       13345666666554 455543 3555666666666665 4544432   23456666666666664


Q ss_pred             HHh
Q 045938          650 IAE  652 (681)
Q Consensus       650 l~~  652 (681)
                      ...
T Consensus       153 ~~~  155 (198)
T d1m9la_         153 YND  155 (198)
T ss_dssp             HHH
T ss_pred             ccC
Confidence            433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=6.2e-07  Score=77.55  Aligned_cols=103  Identities=18%  Similarity=0.097  Sum_probs=51.5

Q ss_pred             cEEEeecccCcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcccCCcceeeecc
Q 045938          448 ETISISECENLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHNLTSLQQLTIGE  526 (681)
Q Consensus       448 ~~L~ls~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~  526 (681)
                      +.++.+++.... .|..+..+++|++|++.++..++.++. .+..+++|+.|++++|......+..+..+++|++|++++
T Consensus        11 ~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            334444433332 244455556666666655544555543 244556666666666653333344455666666666666


Q ss_pred             cCCCCCccccCCCCCCCceeeeecCc
Q 045938          527 GGELPSLEEDDGLPTNLHRLEIIDNK  552 (681)
Q Consensus       527 ~~~~~~~~~~~~~~~~L~~L~l~~~~  552 (681)
                      |... .++...-...+|+.|+|++|.
T Consensus        90 N~l~-~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          90 NALE-SLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SCCS-CCCSTTTCSCCCCEEECCSSC
T ss_pred             CCCc-ccChhhhccccccccccCCCc
Confidence            6543 333222222245555555544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=7.4e-07  Score=77.07  Aligned_cols=89  Identities=20%  Similarity=0.200  Sum_probs=40.6

Q ss_pred             HHhcccCCCccEEEeeccc-CcccccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeeccccccccccccCcc
Q 045938          438 AERLDNNTSLETISISECE-NLKILPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRLQVLPKGLHN  515 (681)
Q Consensus       438 ~~~l~~l~~L~~L~ls~~~-~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~  515 (681)
                      |..+..+++|++|++++++ +....+..|.++++|+.|++++|. +..++. .+..+++|++|++++|. +..+|.....
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~  101 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ  101 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCC-CcccChhhhc
Confidence            3344445555555554443 222223344555555555555544 233322 23445555555555554 2334443333


Q ss_pred             cCCcceeeecccC
Q 045938          516 LTSLQQLTIGEGG  528 (681)
Q Consensus       516 l~~L~~L~l~~~~  528 (681)
                      ..+|+.|++++|+
T Consensus       102 ~~~l~~L~L~~Np  114 (156)
T d2ifga3         102 GLSLQELVLSGNP  114 (156)
T ss_dssp             SCCCCEEECCSSC
T ss_pred             cccccccccCCCc
Confidence            3345555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=1.6e-05  Score=68.80  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=36.5

Q ss_pred             cccCCCccEEEeecccCccc--ccCcCcCcccccEEeeccCCCceecCC-CCCCCCCcceEeecccccc
Q 045938          441 LDNNTSLETISISECENLKI--LPSGLHNLRQLQEIGIWECENLVSFPQ-GGLPCAKLTRLEISYCKRL  506 (681)
Q Consensus       441 l~~l~~L~~L~ls~~~~~~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l  506 (681)
                      ...+++|++|++++|.+...  ++..+..+++|+.|++++|. +.+++. ......+|+++++.+|+..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcC
Confidence            34577777777777776542  23334556677777777665 333332 1112235666666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.00041  Score=59.63  Aligned_cols=64  Identities=11%  Similarity=0.005  Sum_probs=33.7

Q ss_pred             cCcccccEEeeccCCCceecC---CCCCCCCCcceEeeccccccccccc-cCcccCCcceeeecccCCCC
Q 045938          466 HNLRQLQEIGIWECENLVSFP---QGGLPCAKLTRLEISYCKRLQVLPK-GLHNLTSLQQLTIGEGGELP  531 (681)
Q Consensus       466 ~~l~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~  531 (681)
                      .++++|++|++++|.. +.++   ..+..+++|+.|++++|.. ..++. .......|++|++++|+...
T Consensus        62 ~~~~~L~~L~Ls~N~i-~~l~~~~~~~~~l~~L~~L~Ls~N~i-~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRL-YRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCC-CCCSGGGTHHHHSTTCCCCCCTTSCC-CCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccc-cCCchhHHHHhhCCcccccccccCcc-ccchhhhhhhccccceeecCCCCcCc
Confidence            3466777777777663 3332   2233456677777776663 23322 11223456666666665443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.81  E-value=0.0021  Score=55.23  Aligned_cols=81  Identities=10%  Similarity=0.061  Sum_probs=36.7

Q ss_pred             CcEEEEcCCC-Cchh----HHHhcccCCCccEEEeecccCccccc----CcCcCcccccEEeeccCCCcee----cCCCC
Q 045938          423 LKSLDVWSCS-ELES----IAERLDNNTSLETISISECENLKILP----SGLHNLRQLQEIGIWECENLVS----FPQGG  489 (681)
Q Consensus       423 L~~L~l~~~~-~~~~----~~~~l~~l~~L~~L~ls~~~~~~~~~----~~l~~l~~L~~L~l~~~~~l~~----l~~~~  489 (681)
                      |++|+++++. +...    +...+...+.|++|++++|.+.....    ..+...+.|++|++++|.....    +...+
T Consensus        17 L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL   96 (167)
T d1pgva_          17 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST   96 (167)
T ss_dssp             CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred             CcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHH
Confidence            6666666543 2222    22344455566666666655543211    1122345555555555542211    11223


Q ss_pred             CCCCCcceEeeccc
Q 045938          490 LPCAKLTRLEISYC  503 (681)
Q Consensus       490 ~~~~~L~~L~l~~~  503 (681)
                      ...++|++|++++|
T Consensus        97 ~~n~sL~~L~l~~n  110 (167)
T d1pgva_          97 LVTQSIVEFKADNQ  110 (167)
T ss_dssp             TTTCCCSEEECCCC
T ss_pred             HhCCcCCEEECCCC
Confidence            33445555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.76  E-value=0.0066  Score=51.96  Aligned_cols=14  Identities=0%  Similarity=0.216  Sum_probs=6.9

Q ss_pred             cccccccEEeecCC
Q 045938          229 QDICSLKRLTITSC  242 (681)
Q Consensus       229 ~~~~~L~~L~l~~c  242 (681)
                      ...++|++|++++|
T Consensus        41 ~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          41 CNSKHIEKFSLANT   54 (167)
T ss_dssp             TTCSCCCEEECTTS
T ss_pred             hhCCccceeecccc
Confidence            34444555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.92  E-value=0.0088  Score=51.08  Aligned_cols=58  Identities=19%  Similarity=0.169  Sum_probs=27.4

Q ss_pred             CcEEEEcCCCCc-hh----HHHhcccCCCccEEEeecccCccc----ccCcCcCcccccEEeeccCC
Q 045938          423 LKSLDVWSCSEL-ES----IAERLDNNTSLETISISECENLKI----LPSGLHNLRQLQEIGIWECE  480 (681)
Q Consensus       423 L~~L~l~~~~~~-~~----~~~~l~~l~~L~~L~ls~~~~~~~----~~~~l~~l~~L~~L~l~~~~  480 (681)
                      |++|+++++... ..    +...+...++|++|++++|.+...    +...+...+.++.+++++|.
T Consensus        19 L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          19 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             CcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            666666653222 21    223344556666666666654322    11223334555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.71  E-value=0.01  Score=50.70  Aligned_cols=89  Identities=21%  Similarity=0.243  Sum_probs=42.9

Q ss_pred             CCcceEeecccCCcee-eeecccccccccccccEEeecCCCCccccchhhHHHHHHhhhhccCCccEEeeeCCcCccc--
Q 045938          204 PKLEELEINDMKEQTY-IWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCQLSCILEYIDLRDCQDLVK--  280 (681)
Q Consensus       204 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--  280 (681)
                      ++|++|.+.++..+.. .+......+...++|++|++++| .+..-...    .+.......+.++.+++++|....+  
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~----~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAF----ALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHH----HHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHH----HHHHHHhhcccchhhhhccccccchhH
Confidence            6667777766544332 11122233445667777777766 33321111    1222222346666666666654222  


Q ss_pred             --CCCCCCCCCCcceEEEe
Q 045938          281 --LPQSPLSLSSLREIEIY  297 (681)
Q Consensus       281 --l~~~~~~l~~L~~L~L~  297 (681)
                        +...+...++|+.++|.
T Consensus        92 ~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          92 LALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECC
T ss_pred             HHHHHHHHhCccccEEeec
Confidence              22344455566655554