Citrus Sinensis ID: 045956

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150
MDPYNKHQVSLRGASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLKMDQSDRHDSQKAIPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWVDNVGWVKEKKDLQGNVETSAAGIDAVLHDNESLNITYMELFRPVCQQWHLMKLLEIAKTGATSCAAANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGHIAEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTDTVDGQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS
cccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHccccccccEEccccccEEcccccccccccccccccHHHHHHHHHHHcccEEcccccHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccccccEEEEEEcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccc
cccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccHEEEEEcccccccccccccHHHHHHHHHHHHHHHccccccccHEHEHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHccccccccccccHHHHHHHHHHHHHcccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHEEEEcHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHEHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHcccccHHccccccccccccccccccccHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHEHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccHHHHHHHHHHHHccHHHccEEEEEEccccccccccccccHHHHHHHHHHHHHHccHHHccEEEcccccccEEEcHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHcccccccHHHHHHcccEccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHccccccEEEEEEccEEEEEcccccccccEEEHHHcEEEccccccHHHHHHHHHHHHHcccccccc
mdpynkhqvslrgaSTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLItgswissvvlRPFLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSinssdsrknfcslttgtlqerRTWNYQAKKLISLCSFILAhcdkshagsqciVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVETDERFLITASAVTLalrpfhitnfdvssigqldMCCAAEQYCLCLLTIPWFIQRLpaflvpalkhqsilspCFQIFLIRRDKMLSEMLKmdqsdrhdsqkaippigWALTNIICLatgsengfvdtldhpSYVQVVITLAENLLAWVDNVgwvkekkdlqgnvetsaAGIDAVlhdneslnITYMELFRPVCQQWHLMKLLEIAKTgatscaaandkkylgkLELLDIAYFYSYMLRIFSVfnpmvgslpvlnllsftpgYLLNLWgelensifpenghiaednclrtskssvnkkdgildkrqkqtskdGANKLVYALHKftgksqagpnytdtvdgqvdeessdvwtieslryvpqgisKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNglnhdtghqnrplmDSAIRCLHMMyerdcrhqfcppvlwlspakrsrppiavAARTHEVLSanmrsdesltvsslgsvvtttphvfpfeERVEMFREFISMDKVSRkiagdvagpgsrsIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVsecglpeagldyggLSKEFLTDisksafapeyglfsqtstsdrllIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRysfldelstldpeLYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVielkpgggdtsvtnenKMQYVHAMADYKlnrqifpfsnafyrgltdlispswlklFNASEFNQllsggrhdidvddlrkntrytggysegsRTIKLFWEVVEGFEPKERCMLLKFvtscsrapllgfkhlqpsftihkvacdsslwaviggqdverlpsastcyntlklptykrsstLKAKLLYAISsnagfels
mdpynkhqvslrgastkeisreALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTqhqkiqtrdiDCMQKCFKILLdsinssdsrknfcslttgtlqerrtWNYQAKKLISLCSFILAHCDKSHAGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLKMDQSDRHDSQKAIPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWVDNVGWVKEKKDLQGNVETSAAGIDAVLHDNESLNITYMELFRPVCQQWHLMKLLEIAKTGATSCAAANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGHIAEdnclrtskssvnkkdgildkrqkqtskdgaNKLVYALHkftgksqagpnytDTVDGQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLsanmrsdesltvsslgsvvtttphvfpfEERVEMFREFISMDKVsrkiagdvagpgsrsieiVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFsqtstsdrlLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEesfgkrhvielkpgggdtsvtnENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLsggrhdidvddlRKNTrytggysegsrtiKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQdverlpsastcyntlklptykrsstlkAKLLYAissnagfels
MDPYNKHQVSLRGASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLKMDQSDRHDSQKAIPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWVDNVGWVKEKKDLQGNVETSAAGIDAVLHDNESLNITYMELFRPVCQQWHLMKLLEIAKTGATSCAAANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGHIAEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTDTVDGQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLSANMRSDEsltvsslgsvvtttPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS
***********************************NYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLIRRDKML*****************IPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWVDNVGWVKEKKDLQGNVETSAAGIDAVLHDNESLNITYMELFRPVCQQWHLMKLLEIAKTGATSCAAANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGHIAEDNC*****************************LVYALHKFT**********************DVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPA********V*******************VSSLGSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGG****VTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS********
******************************************ASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDK*******IVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLD***************RFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEML***********KAIPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWV************************A*LHDNESLNITYMELFRPVCQQWHLMKLLEIAKT******************LLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENG*******************************DGANKLVYALHKFTGK**A*PNYTDTVDGQVDEESSDVWTI********GISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAART**********************VTTTPHVFPFEERVEMFREFISM*******************EIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS
**************STKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLK*********QKAIPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWVDNVGWVKEKKDLQGNVETSAAGIDAVLHDNESLNITYMELFRPVCQQWHLMKLLEIAKTGATSCAAANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGHIAEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTDTVDGQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS
***********RGASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLKMDQSD***SQKAIPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWVDNVGWV***********************NESLNITYMELFRPVCQQWHLMKLLEIAKTGATSCAAANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGH**********************************KLVYALH**T*******NYTDTVDGQV*E*SSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNA*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDPYNKHQVSLRGASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDITYSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLKMDQSDRHDSQKAIPPIGWALTNIICLATGSENGFVDTLDHPSYVQVVITLAENLLAWVDNVGWVKEKKDLQGNVETSAAGIDAVLHDNESLNITYMELFRPVCQQWHLMKLLEIAKTGATSCAAANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGHIAEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTDTVDGQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1150 2.2.26 [Sep-21-2011]
Q9SCQ21142 E3 ubiquitin-protein liga yes no 0.98 0.986 0.628 0.0
Q08CZ01072 Ubiquitin-protein ligase yes no 0.453 0.486 0.391 1e-106
Q7Z3V41068 Ubiquitin-protein ligase yes no 0.454 0.489 0.384 1e-106
Q9ES341070 Ubiquitin-protein ligase yes no 0.456 0.490 0.386 1e-105
Q80U951083 Ubiquitin-protein ligase no no 0.392 0.416 0.428 1e-102
Q153861083 Ubiquitin-protein ligase no no 0.392 0.416 0.426 1e-101
Q8RWB81029 E3 ubiquitin-protein liga no no 0.448 0.501 0.365 8e-99
Q1K9C41029 Probable E3 ubiquitin pro yes no 0.446 0.498 0.381 2e-93
P53119910 Probable E3 ubiquitin-pro yes no 0.432 0.546 0.35 7e-81
Q8H0T43658 E3 ubiquitin-protein liga no no 0.343 0.107 0.340 1e-55
>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1 Back     alignment and function desciption
 Score = 1486 bits (3846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 732/1165 (62%), Positives = 894/1165 (76%), Gaps = 38/1165 (3%)

Query: 1    MDPYNKHQVSLRGASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKK 60
            MD   KH+VSLRGAS+ EISR+ALL KVSQERELR+YARRA A+++FIQ VWR Y V KK
Sbjct: 1    MDLNRKHKVSLRGASSGEISRDALLAKVSQERELRSYARRANAASLFIQRVWRSYIVRKK 60

Query: 61   VAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFK 120
             A+++QEEW  L++CH+  +T SW+SS VLRPFLFFV  LS QHQKIQ R+I CMQ CFK
Sbjct: 61   AAIEIQEEWENLLSCHSVTLTKSWVSSRVLRPFLFFVRSLSVQHQKIQAREIHCMQTCFK 120

Query: 121  ILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGL 180
            ILL+SINS+D   NFCSL  GT ++ +TW  Q ++++SLCSF+L  C+ S    + ++G+
Sbjct: 121  ILLESINSNDQGYNFCSLAVGTSEDSKTWACQTRRMVSLCSFLLTECNYSQERIKDVIGV 180

Query: 181  TILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDIT 240
              L LR L+VLTD K WK ++N+   DA+TA K ++ F+GS  S  Y ++RRYI  L   
Sbjct: 181  NALLLRILIVLTDPKSWKIITNENFEDAETAKKIIIQFIGSCKSGYYSAVRRYIKTL--- 237

Query: 241  YSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPW 300
                   T  TDER +IT SAVTLALRPFH+         Q D   A E+Y   +LTIP 
Sbjct: 238  -------TKHTDERLVITTSAVTLALRPFHVKQPAFVDDNQPDTNLAVEEYVSLILTIPR 290

Query: 301  FIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLKMDQSDRHDSQKAIPPIGWALT 360
             +  LP+ L+ ALKH+SIL P F   L+ +DK+L+ + +M+ S++      IP +GW + 
Sbjct: 291  LVCYLPSALIRALKHKSILMPSFHTILLLKDKILNIISEMENSEKQSCTMEIPSVGWVIG 350

Query: 361  NIICLATGSENGFVDTLD-HPS-----YVQVVITLAENLLAWVDNVGWVKEKKDLQGNVE 414
            NII LAT SE  F+D  + +P      YV V++TLAENLL+ V++VG     +D+  ++E
Sbjct: 351  NIISLATVSETDFMDPQESNPEMFYVLYVHVIVTLAENLLSQVESVGI----QDIHLDIE 406

Query: 415  TSAAGIDAVLHDNESLNITYMELFRPVCQQWHLMKLLEIA----KTGATSCAAANDKKYL 470
             ++   +       S+ I+++E+ RPVCQQWHL KLL  +    +  A   A+ + KK  
Sbjct: 407  ATSNETE----KGNSVKISFVEMLRPVCQQWHLAKLLAASGKEIRVIADKDASTSSKKGS 462

Query: 471  GKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGHI 530
              L LLDIA  YS MLRIF V NP++G LPVLN+LSF PGY+++LW  LE+ + PENG  
Sbjct: 463  ETLGLLDIARLYSCMLRIFCVMNPVLGPLPVLNMLSFCPGYIVSLWNSLESVLLPENGCT 522

Query: 531  AEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTDTVD--- 587
            A+D    ++K+S N +    +K+ K    D  NK V  L+KF+GKS     + +      
Sbjct: 523  ADDASHGSAKTSWNTRSPS-EKKLKHLKNDSVNKWVNVLNKFSGKSPGPREHVECTSDQP 581

Query: 588  --GQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFT 645
              GQV+E ++DVW +E+LR  P GISK++SCLLHLFCA Y+HLL+VLDDI+FYEKQVPF 
Sbjct: 582  GSGQVNESTNDVWDVETLRGGPVGISKEVSCLLHLFCATYAHLLVVLDDIQFYEKQVPFM 641

Query: 646  LEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPA 705
            LE+Q+RIA+MLNTLVY GL   TG ++R LMDSAIRCLH++YERDCRH FC   LWLSP 
Sbjct: 642  LEKQQRIASMLNTLVYYGLLRGTGPESRQLMDSAIRCLHLLYERDCRHPFCASALWLSPG 701

Query: 706  KRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMFREFISMDK 765
            + SRPPIA AARTHEVL     + + LT  S+GSV+T TPHVFPFEERV +FREFIS DK
Sbjct: 702  RTSRPPIAFAARTHEVLP----TSDVLTTPSMGSVITITPHVFPFEERVHVFREFISKDK 757

Query: 766  VSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGL 825
             SRK+AG+V  PG+RSIEIVVRRGH+VEDGF+QLNS+GSRLKSSIHVSFV+E GLPEAGL
Sbjct: 758  ASRKMAGEVDAPGARSIEIVVRRGHVVEDGFQQLNSIGSRLKSSIHVSFVNESGLPEAGL 817

Query: 826  DYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGK 885
            DYGGLSKEFLTDI+K+AFA EYGLFSQT TSDRLL+P+ +AR+LENGIQM EFLGR+VGK
Sbjct: 818  DYGGLSKEFLTDITKAAFATEYGLFSQTPTSDRLLVPSPSARHLENGIQMIEFLGRIVGK 877

Query: 886  ALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTV 945
            ALYEGILLDY+FSHVF+QKLLGRYSF+DELS LDPELYRNLMYVKHYDGD+KELCLDFTV
Sbjct: 878  ALYEGILLDYSFSHVFIQKLLGRYSFIDELSGLDPELYRNLMYVKHYDGDLKELCLDFTV 937

Query: 946  TEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISP 1005
            TEE  GK  +IELKPGG DTSVTNENKMQY+HAMADYKLNRQI PFSNAFYRGLTDLISP
Sbjct: 938  TEEFCGKMSIIELKPGGKDTSVTNENKMQYIHAMADYKLNRQIVPFSNAFYRGLTDLISP 997

Query: 1006 SWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERC 1065
            +WLKLFNA EFNQLLSGG HDIDVDDLR+NT+YTGGYS+ SRTIK+FWEV++GFEP ERC
Sbjct: 998  AWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERC 1057

Query: 1066 MLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLP 1125
            +LLKFVTSCSRAPLLGFK+LQP+F IHKV+CD+SLWA IGGQDVERLPSASTCYNTLKLP
Sbjct: 1058 LLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLP 1117

Query: 1126 TYKRSSTLKAKLLYAISSNAGFELS 1150
            TYKR+ST++ KLLYAI+SNAGFELS
Sbjct: 1118 TYKRASTMREKLLYAITSNAGFELS 1142
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1 Back     alignment and function description
>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=3 Back     alignment and function description
>sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3 Back     alignment and function description
>sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2 Back     alignment and function description
>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3 Back     alignment and function description
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1 Back     alignment and function description
>sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC167.07c PE=2 SV=1 Back     alignment and function description
>sp|P53119|HUL5_YEAST Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HUL5 PE=1 SV=1 Back     alignment and function description
>sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1150
2254410661161 PREDICTED: E3 ubiquitin-protein ligase U 0.996 0.987 0.717 0.0
2555754511148 ubiquitin-protein ligase, putative [Rici 0.977 0.979 0.701 0.0
3565708041157 PREDICTED: E3 ubiquitin-protein ligase U 0.993 0.987 0.678 0.0
4494401771169 PREDICTED: E3 ubiquitin-protein ligase U 0.993 0.977 0.650 0.0
152317441142 E3 ubiquitin-protein ligase UPL7 [Arabid 0.98 0.986 0.628 0.0
1107425151142 hypothetical protein [Arabidopsis thalia 0.98 0.986 0.627 0.0
2978166101130 ubiquitin-protein ligase 7 [Arabidopsis 0.966 0.984 0.620 0.0
4139334231156 hypothetical protein ZEAMMB73_560135 [Ze 0.980 0.975 0.566 0.0
2181935241145 hypothetical protein OsI_13053 [Oryza sa 0.965 0.969 0.548 0.0
2420333591087 hypothetical protein SORBIDRAFT_01g01184 0.919 0.972 0.572 0.0
>gi|225441066|ref|XP_002284049.1| PREDICTED: E3 ubiquitin-protein ligase UPL7 [Vitis vinifera] gi|297740027|emb|CBI30209.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1716 bits (4445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 836/1165 (71%), Positives = 961/1165 (82%), Gaps = 19/1165 (1%)

Query: 1    MDPYNKHQVSLRGASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKK 60
            MD + KHQVSLRGAS KEI+R+ALLEKVSQERELRNY RRATA+AIFIQ VWR Y+V K 
Sbjct: 1    MDDHRKHQVSLRGASAKEITRDALLEKVSQERELRNYVRRATAAAIFIQRVWRRYNVIKM 60

Query: 61   VAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFK 120
            VAVQLQEEW  LVN HA L+T +WISS  LRPFLFF+T LS +HQ+I+TRD+DC++ CFK
Sbjct: 61   VAVQLQEEWETLVNHHAVLMTRTWISSSFLRPFLFFITYLSIRHQRIRTRDVDCIRHCFK 120

Query: 121  ILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGL 180
             LL+SINS+DS+ NFCSL TGT +ERR W Y+A+KLIS+C FILA CD +H G Q I  L
Sbjct: 121  TLLESINSTDSKMNFCSLATGTPEERRIWTYEAEKLISICLFILAECD-THPGGQDINVL 179

Query: 181  TILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDIT 240
            + +A+R LVVLTD K WKS+++D  +DAD A+K+L+ FMGSR   LY+ IR+Y +KLD  
Sbjct: 180  SSMAMRLLVVLTDTKGWKSITDDNFQDADRAVKDLVRFMGSRKGGLYLCIRKYFNKLDAP 239

Query: 241  YSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPW 300
             SS  NS V+ DERFLITASA+TLALRPF   N DV+  G  ++  AAEQYC+ +LTIPW
Sbjct: 240  CSSLKNSVVQADERFLITASAITLALRPFQAANLDVTEPGPFNVQYAAEQYCVYILTIPW 299

Query: 301  FIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLKMDQSDRHDSQKAIPPIGWALT 360
              QRLPA L+PA+KH+SILSPCFQ  LI R K+L EM +M         KA+P + WAL 
Sbjct: 300  LAQRLPAVLLPAMKHKSILSPCFQTLLILRKKILKEMSEMHPFQIPHCSKAVPQVSWALA 359

Query: 361  NIICLATGSENGFVDT------LDHPSYVQVVITLAENLLAWVDNVGWV-KEKKDLQGNV 413
            N+ICLATGSEN  VD       L+H SYV VV  LAENLL W+++VGW+ K+ +++Q NV
Sbjct: 360  NVICLATGSENDCVDQGQFTQGLNHTSYVHVVNILAENLLDWLEDVGWIRKDNQEIQENV 419

Query: 414  ETSAAGIDAVLHDNES---LNITYMELFRPVCQQWHLMKLLEIAKTGATSCAAA--NDKK 468
            ET A  ID     + +   + ++YM+LFRPVCQQWHLMKLL I K  A  C ++  N+ +
Sbjct: 420  ETCANPIDIACSPDTTYGPIKMSYMDLFRPVCQQWHLMKLLAILKNVAFICDSSLPNNLE 479

Query: 469  YLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENG 528
            Y GKLELLDIAYFYSYMLRIFSV NP+VG LPVLN+L+FTPG+L+NLW  LE  +FP + 
Sbjct: 480  YSGKLELLDIAYFYSYMLRIFSVLNPVVGPLPVLNMLAFTPGFLVNLWEALEGYLFPGDV 539

Query: 529  HIAEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTD--TV 586
              +EDN L  SK S NK DG  +K+QKQ S+DG NK V  L K TGKSQ   +     T 
Sbjct: 540  KFSEDNDLCKSKISTNKNDGAYEKKQKQASRDGGNKWVTMLQKITGKSQMDVDLISGRTR 599

Query: 587  DGQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTL 646
              QV E++ DVW +E LR  PQGISKD+SCLLHLFCA YSHLLLVLDDIEFYEKQVPFTL
Sbjct: 600  TSQVKEDAFDVWDVEPLRCGPQGISKDISCLLHLFCATYSHLLLVLDDIEFYEKQVPFTL 659

Query: 647  EQQRRIAAMLNTLVYNGLNHDTG-HQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPA 705
            EQQRRIA+MLNTLVYNG  H +G  QNRPLMD+A+RCLH++YERDCRHQFCPP LWLSPA
Sbjct: 660  EQQRRIASMLNTLVYNGSFHGSGGQQNRPLMDAAVRCLHLLYERDCRHQFCPPGLWLSPA 719

Query: 706  KRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMFREFISMDK 765
            + +RPPIAVAARTHEVLSA  + D++LT+ S+  V+TTT HVFPFEERV+MFREFI MDK
Sbjct: 720  RNNRPPIAVAARTHEVLSA--KPDDALTIPSMAPVITTT-HVFPFEERVQMFREFIKMDK 776

Query: 766  VSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGL 825
             SRK+AG+VAGPGSRS+E+V+RRGHIVEDGF+QLNSLGSRLKS IHVSF+SECGLPEAGL
Sbjct: 777  FSRKMAGEVAGPGSRSVEVVIRRGHIVEDGFQQLNSLGSRLKSCIHVSFISECGLPEAGL 836

Query: 826  DYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGK 885
            DYGGL KEFLTDI+K+AFAPEYGLFSQTSTSDRLL+PN AAR+LENG QM EFLG+VVGK
Sbjct: 837  DYGGLFKEFLTDIAKAAFAPEYGLFSQTSTSDRLLVPNTAARFLENGTQMIEFLGKVVGK 896

Query: 886  ALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTV 945
            ALYEGILLDY+FSHVF+QKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKEL LDFTV
Sbjct: 897  ALYEGILLDYSFSHVFIQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELSLDFTV 956

Query: 946  TEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISP 1005
            TEES GKRH+IELKPGG D  VTNENK+QYVHAMADYKLNRQ+ P SNAFYRGLTDLISP
Sbjct: 957  TEESLGKRHIIELKPGGKDAIVTNENKLQYVHAMADYKLNRQMLPLSNAFYRGLTDLISP 1016

Query: 1006 SWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERC 1065
            SWLKLFNASEFNQLLSGG HDID+ DLR +TRYTGGY+EGSRT+KLFWEV+ GFEPKERC
Sbjct: 1017 SWLKLFNASEFNQLLSGGNHDIDITDLRNHTRYTGGYTEGSRTVKLFWEVITGFEPKERC 1076

Query: 1066 MLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLP 1125
            MLLKFVTSCSRAPLLGFKHLQP+FTIHKVACD  LWA IGGQDVERLPSASTCYNTLKLP
Sbjct: 1077 MLLKFVTSCSRAPLLGFKHLQPTFTIHKVACDVPLWATIGGQDVERLPSASTCYNTLKLP 1136

Query: 1126 TYKRSSTLKAKLLYAISSNAGFELS 1150
            TYKR STL+AKLLYAI+SNAGFELS
Sbjct: 1137 TYKRPSTLRAKLLYAINSNAGFELS 1161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575451|ref|XP_002528627.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223531916|gb|EEF33730.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356570804|ref|XP_003553574.1| PREDICTED: E3 ubiquitin-protein ligase UPL7 [Glycine max] Back     alignment and taxonomy information
>gi|449440177|ref|XP_004137861.1| PREDICTED: E3 ubiquitin-protein ligase UPL7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15231744|ref|NP_190877.1| E3 ubiquitin-protein ligase UPL7 [Arabidopsis thaliana] gi|79314848|ref|NP_001030850.1| E3 ubiquitin-protein ligase UPL7 [Arabidopsis thaliana] gi|75265625|sp|Q9SCQ2.1|UPL7_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL7; Short=Ubiquitin-protein ligase 7 gi|6630729|emb|CAB64212.1| putative protein [Arabidopsis thaliana] gi|332645514|gb|AEE79035.1| E3 ubiquitin-protein ligase UPL7 [Arabidopsis thaliana] gi|332645515|gb|AEE79036.1| E3 ubiquitin-protein ligase UPL7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110742515|dbj|BAE99175.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297816610|ref|XP_002876188.1| ubiquitin-protein ligase 7 [Arabidopsis lyrata subsp. lyrata] gi|297322026|gb|EFH52447.1| ubiquitin-protein ligase 7 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|413933423|gb|AFW67974.1| hypothetical protein ZEAMMB73_560135 [Zea mays] Back     alignment and taxonomy information
>gi|218193524|gb|EEC75951.1| hypothetical protein OsI_13053 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|242033359|ref|XP_002464074.1| hypothetical protein SORBIDRAFT_01g011845 [Sorghum bicolor] gi|241917928|gb|EER91072.1| hypothetical protein SORBIDRAFT_01g011845 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1150
TAIR|locus:21019731142 UPL7 "AT3G53090" [Arabidopsis 0.98 0.986 0.623 0.0
UNIPROTKB|A8J7F21258 UBC8 "Ubiquitin-protein ligase 0.350 0.320 0.497 2.3e-136
UNIPROTKB|E1BZA81086 UBE3C "Uncharacterized protein 0.338 0.358 0.457 1.5e-116
MGI|MGI:21409981083 Ube3c "ubiquitin protein ligas 0.338 0.359 0.462 2.6e-115
UNIPROTKB|F1NZJ61084 UBE3C "Uncharacterized protein 0.338 0.358 0.457 4.1e-113
UNIPROTKB|F1PB351088 UBE3C "Uncharacterized protein 0.338 0.357 0.459 1.8e-112
RGD|15599861083 Ube3c "ubiquitin protein ligas 0.338 0.359 0.459 3.6e-112
UNIPROTKB|Q153861083 UBE3C "Ubiquitin-protein ligas 0.338 0.359 0.462 5.8e-112
UNIPROTKB|F1N7031085 UBE3C "Uncharacterized protein 0.338 0.358 0.469 4.1e-110
ZFIN|ZDB-GENE-040426-12111081 ube3c "ubiquitin protein ligas 0.338 0.359 0.454 1.1e-107
TAIR|locus:2101973 UPL7 "AT3G53090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3666 (1295.6 bits), Expect = 0., P = 0.
 Identities = 726/1165 (62%), Positives = 886/1165 (76%)

Query:     1 MDPYNKHQVSLRGASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKK 60
             MD   KH+VSLRGAS+ EISR+ALL KVSQERELR+YARRA A+++FIQ VWR Y V KK
Sbjct:     1 MDLNRKHKVSLRGASSGEISRDALLAKVSQERELRSYARRANAASLFIQRVWRSYIVRKK 60

Query:    61 VAVQLQEEWVALVNCHASLITGSWISSVVLRPFLFFVTRLSTQHQKIQTRDIDCMQKCFK 120
              A+++QEEW  L++CH+  +T SW+SS VLRPFLFFV  LS QHQKIQ R+I CMQ CFK
Sbjct:    61 AAIEIQEEWENLLSCHSVTLTKSWVSSRVLRPFLFFVRSLSVQHQKIQAREIHCMQTCFK 120

Query:   121 ILLDSINSSDSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSHAGSQCIVGL 180
             ILL+SINS+D   NFCSL  GT ++ +TW  Q ++++SLCSF+L  C+ S    + ++G+
Sbjct:   121 ILLESINSNDQGYNFCSLAVGTSEDSKTWACQTRRMVSLCSFLLTECNYSQERIKDVIGV 180

Query:   181 TILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLLWFMGSRNSHLYMSIRRYIDKLDIT 240
               L LR L+VLTD K WK ++N+   DA+TA K ++ F+GS  S  Y ++RRYI  L   
Sbjct:   181 NALLLRILIVLTDPKSWKIITNENFEDAETAKKIIIQFIGSCKSGYYSAVRRYIKTL--- 237

Query:   241 YSSQINSTVETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPW 300
                    T  TDER +IT SAVTLALRPFH+         Q D   A E+Y   +LTIP 
Sbjct:   238 -------TKHTDERLVITTSAVTLALRPFHVKQPAFVDDNQPDTNLAVEEYVSLILTIPR 290

Query:   301 FIQRLPAFLVPALKHQSILSPCFQIFLIRRDKMLSEMLKMDQSDRHDSQKAIPPIGWALT 360
              +  LP+ L+ ALKH+SIL P F   L+ +DK+L+ + +M+ S++      IP +GW + 
Sbjct:   291 LVCYLPSALIRALKHKSILMPSFHTILLLKDKILNIISEMENSEKQSCTMEIPSVGWVIG 350

Query:   361 NIICLATGSENGFVDTLD-HPS-----YVQVVITLAENLLAWVDNVGWVKEKKDLQGNVE 414
             NII LAT SE  F+D  + +P      YV V++TLAENLL+ V++VG     +D+  ++E
Sbjct:   351 NIISLATVSETDFMDPQESNPEMFYVLYVHVIVTLAENLLSQVESVGI----QDIHLDIE 406

Query:   415 TSAAGIDAVLHDNESLNITYMELFRPVCQQWHLMKLLEIA----KTGATSCAAANDKKYL 470
              ++   +       S+ I+++E+ RPVCQQWHL KLL  +    +  A   A+ + KK  
Sbjct:   407 ATSNETEK----GNSVKISFVEMLRPVCQQWHLAKLLAASGKEIRVIADKDASTSSKKGS 462

Query:   471 GKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELENSIFPENGHI 530
               L LLDIA  YS MLRIF V NP++G LPVLN+LSF PGY+++LW  LE+ + PENG  
Sbjct:   463 ETLGLLDIARLYSCMLRIFCVMNPVLGPLPVLNMLSFCPGYIVSLWNSLESVLLPENGCT 522

Query:   531 AEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTD-TVD-- 587
             A+D    ++K+S N +    +K+ K    D  NK V  L+KF+GKS     + + T D  
Sbjct:   523 ADDASHGSAKTSWNTRSPS-EKKLKHLKNDSVNKWVNVLNKFSGKSPGPREHVECTSDQP 581

Query:   588 --GQVDEESSDVWTIESLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFT 645
               GQV+E ++DVW +E+LR  P GISK++SCLLHLFCA Y+HLL+VLDDI+FYEKQVPF 
Sbjct:   582 GSGQVNESTNDVWDVETLRGGPVGISKEVSCLLHLFCATYAHLLVVLDDIQFYEKQVPFM 641

Query:   646 LEQQRRIAAMLNTLVYNGLNHDTGHQNRPLMDSAIRCLHMMYERDCRHQFCPPVLWLSPA 705
             LE+Q+RIA+MLNTLVY GL   TG ++R LMDSAIRCLH++YERDCRH FC   LWLSP 
Sbjct:   642 LEKQQRIASMLNTLVYYGLLRGTGPESRQLMDSAIRCLHLLYERDCRHPFCASALWLSPG 701

Query:   706 KRSRPPIAVAARTHEVLSANMRSDEXXXXXXXXXXXXXXPHVFPFEERVEMFREFISMDK 765
             + SRPPIA AARTHEVL  +    +              PHVFPFEERV +FREFIS DK
Sbjct:   702 RTSRPPIAFAARTHEVLPTS----DVLTTPSMGSVITITPHVFPFEERVHVFREFISKDK 757

Query:   766 VSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGL 825
              SRK+AG+V  PG+RSIEIVVRRGH+VEDGF+QLNS+GSRLKSSIHVSFV+E GLPEAGL
Sbjct:   758 ASRKMAGEVDAPGARSIEIVVRRGHVVEDGFQQLNSIGSRLKSSIHVSFVNESGLPEAGL 817

Query:   826 DYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGK 885
             DYGGLSKEFLTDI+K+AFA EYGLFSQT TSDRLL+P+ +AR+LENGIQM EFLGR+VGK
Sbjct:   818 DYGGLSKEFLTDITKAAFATEYGLFSQTPTSDRLLVPSPSARHLENGIQMIEFLGRIVGK 877

Query:   886 ALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTV 945
             ALYEGILLDY+FSHVF+QKLLGRYSF+DELS LDPELYRNLMYVKHYDGD+KELCLDFTV
Sbjct:   878 ALYEGILLDYSFSHVFIQKLLGRYSFIDELSGLDPELYRNLMYVKHYDGDLKELCLDFTV 937

Query:   946 TEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISP 1005
             TEE  GK  +IELKPGG DTSVTNENKMQY+HAMADYKLNRQI PFSNAFYRGLTDLISP
Sbjct:   938 TEEFCGKMSIIELKPGGKDTSVTNENKMQYIHAMADYKLNRQIVPFSNAFYRGLTDLISP 997

Query:  1006 SWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERC 1065
             +WLKLFNA EFNQLLSGG HDIDVDDLR+NT+YTGGYS+ SRTIK+FWEV++GFEP ERC
Sbjct:   998 AWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERC 1057

Query:  1066 MLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLP 1125
             +LLKFVTSCSRAPLLGFK+LQP+F IHKV+CD+SLWA IGGQDVERLPSASTCYNTLKLP
Sbjct:  1058 LLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLP 1117

Query:  1126 TYKRSSTLKAKLLYAISSNAGFELS 1150
             TYKR+ST++ KLLYAI+SNAGFELS
Sbjct:  1118 TYKRASTMREKLLYAITSNAGFELS 1142
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0000151 "ubiquitin ligase complex" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=ISS
UNIPROTKB|A8J7F2 UBC8 "Ubiquitin-protein ligase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZA8 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2140998 Ube3c "ubiquitin protein ligase E3C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZJ6 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB35 UBE3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1559986 Ube3c "ubiquitin protein ligase E3C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q15386 UBE3C "Ubiquitin-protein ligase E3C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N703 UBE3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1211 ube3c "ubiquitin protein ligase E3C" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SCQ2UPL7_ARATH6, ., 3, ., 2, ., -0.62830.980.9868yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1150
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-149
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 1e-111
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 1e-106
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 1e-102
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  450 bits (1159), Expect = e-149
 Identities = 171/369 (46%), Positives = 222/369 (60%), Gaps = 19/369 (5%)

Query: 782  IEIVVRRGHIVEDGFRQLNSLG-SRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISK 840
            ++I VRR  I+ED  RQL+ +  S LK  + V FV E      G+D GG+++EF T +SK
Sbjct: 1    LKITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGE-----EGIDAGGVTREFFTLVSK 55

Query: 841  SAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHV 900
              F P YGLF  T     LL PN ++   E+ +++F FLGR++GKALYEG LLD  FS  
Sbjct: 56   ELFNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRA 115

Query: 901  FVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTV-TEESFGKRHVIELK 959
            F +KLLG+   L++L  LDPELY++L  +   DGD  +L L FT+  + SFG    +ELK
Sbjct: 116  FYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELK 175

Query: 960  PGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQL 1019
            PGG D  VTNENK +YV    DY+LN+ I     AF  G +++I    L LF   E   L
Sbjct: 176  PGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235

Query: 1020 LSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPL 1079
            + G   DID++DL+KNT Y GGYS  S TI+ FWEV+E F  +ER   L+FVT  SR P+
Sbjct: 236  ICGSE-DIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPV 294

Query: 1080 LGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLY 1139
             GF  L P FTI +V           G   +RLP+A TC+N LKLP Y     L+ KLLY
Sbjct: 295  GGFADLNPKFTIRRV-----------GSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLY 343

Query: 1140 AISSNAGFE 1148
            AI+  AGF 
Sbjct: 344  AINEGAGFG 352

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1150
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG09421001 consensus E3 ubiquitin protein ligase [Posttransla 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
KOG0941850 consensus E3 ubiquitin protein ligase [Posttransla 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG0939720 consensus E3 ubiquitin-protein ligase/Putative ups 100.0
KOG0170621 consensus E3 ubiquitin protein ligase [Posttransla 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 100.0
KOG09433015 consensus Predicted ubiquitin-protein ligase/hyper 100.0
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.46
smart0001526 IQ Short calmodulin-binding motif containing conse 96.79
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 92.07
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2e-206  Score=1755.11  Aligned_cols=1024  Identities=45%  Similarity=0.733  Sum_probs=914.3

Q ss_pred             CCcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccchhhhhccc
Q 045956           13 GASTKEISREALLEKVSQERELRNYARRATASAIFIQSVWRCYSVTKKVAVQLQEEWVALVNCHASLITGSWISSVVLRP   92 (1150)
Q Consensus        13 GaS~~e~~r~~lL~ka~~eRe~R~~~rrr~~aAi~IQa~vRg~l~rk~~~~~~r~efD~~~~~~~~~~~~~~l~~~llr~   92 (1150)
                      |+|..+++|++||+|++||||||+.+|||++||++||++||||++|||++..|++|||.++.+++.+.++  ...+..|.
T Consensus         1 m~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~--~~erv~~~   78 (1096)
T KOG4427|consen    1 MFSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTK--VLERVARP   78 (1096)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHH--HHHHHhhh
Confidence            4566678999999999999999999999999999999999999999999999999999999988765555  33677788


Q ss_pred             eEEEEecccccccccccchhHHHHHHHHHHHhcccCC-CCCcceeeeccccccccccHHHHHHHHHHHHHHHhhcCCCCC
Q 045956           93 FLFFVTRLSTQHQKIQTRDIDCMQKCFKILLDSINSS-DSRKNFCSLTTGTLQERRTWNYQAKKLISLCSFILAHCDKSH  171 (1150)
Q Consensus        93 ~lFf~~~~~~~~~~~~~~D~~Ri~~~~~~L~~s~~~~-~~~~~~~~l~~~~~~~~~~W~~qik~ll~lC~~~L~~~~~~~  171 (1150)
                      |++|.+.....|++++.+ .+|++..|+.|+.||+++ |.|.+||++++++ ++...|+.|||+++|+||++|.+|+|+.
T Consensus        79 ~l~var~ll~q~r~ie~~-~e~~~~iCr~il~smds~n~~~~sfvsl~l~k-e~sk~w~~qik~ils~c~~lL~eln~Er  156 (1096)
T KOG4427|consen   79 FLPVARSLLVQHRKIEAR-EERLEQICRKILLSMDSENDQKYSFVSLALGK-EDSKTWICQIKRILSLCSFLLTELNPER  156 (1096)
T ss_pred             HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhcCCCCcceeeeeehhcc-cchHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            888888777777764433 788888889999888854 6999999999997 6666999999999999999999999987


Q ss_pred             CCcccccccchhhHHHHHHhcChhhHHhhcccchhhHHHHHHHHH-HHHHh-hhhhhHHHHHHHHH-hcCcCccccCCCc
Q 045956          172 AGSQCIVGLTILALRFLVVLTDLKVWKSLSNDMLRDADTAMKNLL-WFMGS-RNSHLYMSIRRYID-KLDITYSSQINST  248 (1150)
Q Consensus       172 ~~~~~~~~~~~l~lr~Lv~fT~~~~wk~~~~~~~~~~~~~~~~i~-~~mg~-~~~g~y~~l~~ll~-~l~~~~~~~~~~~  248 (1150)
                      ..|+...   ++++|||++|||+++||+++|+|++++++||+.|| ++||| +++|||+.+|++|. +..++.+.+++.+
T Consensus       157 ~ad~~~~---alll~~livfTdpksWkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~~T  233 (1096)
T KOG4427|consen  157 IADSIVN---ALLLHILIVFTDPKSWKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVITT  233 (1096)
T ss_pred             HHHHHHH---HHHHHeeeEEeCCcceeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceeeee
Confidence            5544444   99999999999999999999999999999999999 99999 99999999999999 9999999999988


Q ss_pred             cccchhhhhHHHHHHHhhccccccccCCcccccccHHHHHHHHHHHhcCccccccccCcchhhhcccccccCchhHHHHH
Q 045956          249 VETDERFLITASAVTLALRPFHITNFDVSSIGQLDMCCAAEQYCLCLLTIPWFIQRLPAFLVPALKHQSILSPCFQIFLI  328 (1150)
Q Consensus       249 ~~~~~~~~i~~a~~tl~lRPl~~~~~s~~~~~~~~~~~~~~~f~~~iLsiP~l~~~l~~~~lpal~~~~~~~P~~~~~~~  328 (1150)
                               ++|++++++||+...+|++         ++++.|+.+|||+|+|+.||+..+.-+|.|.++..        
T Consensus       234 ---------l~a~~sl~~rpvk~~nfsd---------~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~--------  287 (1096)
T KOG4427|consen  234 ---------LAATFSLRLRPVKQPNFSD---------NLVEEFVSLILTVPALVCHLPSALPQALEHLSSLM--------  287 (1096)
T ss_pred             ---------hhhhhhhccccccCCchHH---------HHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHH--------
Confidence                     9999999999999999986         69999999999999999999966666666664441        


Q ss_pred             hhhhHHHHHHhhcccccccccCCCCchhhHHHhHhhhcCCCCCcccccCC---cchHHHHHHHHHh---------hhhhh
Q 045956          329 RRDKMLSEMLKMDQSDRHDSQKAIPPIGWALTNIICLATGSENGFVDTLD---HPSYVQVVITLAE---------NLLAW  396 (1150)
Q Consensus       329 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~lL~nll~L~~~~~~~~~~~~~---~~~yv~vl~~ll~---------nl~~w  396 (1150)
                      +.+|+|.-+-+++.++...++++|++++|+|||||+|++.++..+.++++   |..|++++.++.+         ++++|
T Consensus       288 l~~K~l~~l~d~~~~ee~~tsme~~~~l~llgNiv~la~is~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~w  367 (1096)
T KOG4427|consen  288 LLDKILNILRDMENSEEQSTSMEGPSVLWLLGNIVHLATISETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDW  367 (1096)
T ss_pred             HHHHHHHHHHhhHhHHHhhcCCcccHhHHHHhhhheeeecCcccccccccccchhhhHHHHHHHHHHHhhcccccceeee
Confidence            22333443444545777888999999999999999999999876666554   4566677777765         56679


Q ss_pred             cccccccccccccCCCccccccCcccccch------hHHHHHHHhhhcccc-----------hhhhH----HHHHHHHhh
Q 045956          397 VDNVGWVKEKKDLQGNVETSAAGIDAVLHD------NESLNITYMELFRPV-----------CQQWH----LMKLLEIAK  455 (1150)
Q Consensus       397 ~~~~gw~~~~~~~~~~~~~s~~~~~~~~~~------~~~~~~L~~d~l~~~-----------~~~~~----~~~ll~~~~  455 (1150)
                      ||++||+++..+.+.+.     .+..|+.+      .+|+|.||+|.+...           .++..    +..++.+++
T Consensus       368 H~vlg~~s~~~ek~~n~-----~i~~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~l  442 (1096)
T KOG4427|consen  368 HPVLGWTSNETEKGNNV-----KISLVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRAL  442 (1096)
T ss_pred             ehhhccccCCCCCccch-----hHHHHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHH
Confidence            99999999999998886     56777764      779999999998754           23333    788899998


Q ss_pred             hcccc---cc----c-------ccccccccchhhhhHHHHHHHHHHHhhhccccCcccceeeccccCcchHHHHHHHHHh
Q 045956          456 TGATS---CA----A-------ANDKKYLGKLELLDIAYFYSYMLRIFSVFNPMVGSLPVLNLLSFTPGYLLNLWGELEN  521 (1150)
Q Consensus       456 ~~~~~---~~----~-------~~~~~~~~~~~~~~v~~ly~~lL~~~~~l~~~~~~l~iL~~Laf~~~~l~~LW~~l~~  521 (1150)
                      +.+..   +.    .       +.+..+++++.+++||.+|.+.|+|+.+|     |++|+++|||.+..|+++|-.+..
T Consensus       443 rk~~~~~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~iC~~y~aslnTl~~m-----r~~iltgl~~~dnll~~lW~~i~e  517 (1096)
T KOG4427|consen  443 RKSCVMGPVLGPVPSSNMLSFCPKWNSSAEVLLVENICTAYDASLNTLWQM-----RLPILTGLCYLDNLLVNLWVNILE  517 (1096)
T ss_pred             HHhcccCCccCCCccchhhhccccccCcccceehhhhhhHHHhhhhhHHHh-----hhHHhhcchhhhhhHHHHHHHHHH
Confidence            85542   11    1       14667889999999999999999999999     999999999999999999999998


Q ss_pred             ccCCCCCccccccccccccCccCccccchhhhhhcccccchhhHHHHHhhhcCCCCCCCCCCccCCCCccccCccchhhc
Q 045956          522 SIFPENGHIAEDNCLRTSKSSVNKKDGILDKRQKQTSKDGANKLVYALHKFTGKSQAGPNYTDTVDGQVDEESSDVWTIE  601 (1150)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (1150)
                      + ||++|.                              +                ++|        ++|++...+.|+.+
T Consensus       518 ~-G~~~G~------------------------------~----------------~gs--------~~~~~~~k~~~ev~  542 (1096)
T KOG4427|consen  518 L-GPSPGP------------------------------Q----------------PGS--------GQVNESTKDVLEVE  542 (1096)
T ss_pred             h-CCCCCC------------------------------C----------------CCc--------cccchhHHHHHhHH
Confidence            8 787772                              1                111        25566788899999


Q ss_pred             cccccCCCCchhhhHHHHHHHHHHHhhhcccChhhhhcCCCCCCHHHHHHHHHHHHHHHHccccCCCCCCCc----cchH
Q 045956          602 SLRYVPQGISKDLSCLLHLFCAAYSHLLLVLDDIEFYEKQVPFTLEQQRRIAAMLNTLVYNGLNHDTGHQNR----PLMD  677 (1150)
Q Consensus       602 ~l~~~~~~~~~~~~~~L~lf~~~~sh~L~vldD~Ef~~~~~pf~l~e~~~l~~~Lk~~~~~~~~~~~~~~~~----~l~~  677 (1150)
                      ++..++.+.+++..++|.|||+||+|++.|+||.|||++|.||.++|++.|+.|||+++|+++|....++.+    .+++
T Consensus       543 ~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~~g~v~eak~~t~~lF~  622 (1096)
T KOG4427|consen  543 TLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIWDGTVPEAKQLTTGLFD  622 (1096)
T ss_pred             HHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcccchhhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999987766554    4579


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCcCcCCCCchHHHHHHHHHHhhhccCCccccccccccccccCCcccChhhHHHHH
Q 045956          678 SAIRCLHMMYERDCRHQFCPPVLWLSPAKRSRPPIAVAARTHEVLSANMRSDESLTVSSLGSVVTTTPHVFPFEERVEMF  757 (1150)
Q Consensus       678 ~~~~lL~~Ly~rd~R~~f~p~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~Pf~~pFe~Rv~~F  757 (1150)
                      ++++||..||+|||||+|+|++||++++...  . .-.++.++..            +...-+++.+||++||++||.+|
T Consensus       623 S~h~~l~vLYeRDcRr~Fta~d~WL~pevkP--s-~f~~e~ek~~------------~~a~lll~~mpHviP~edRv~lF  687 (1096)
T KOG4427|consen  623 SAHRLLHVLYERDCRRPFTASDHWLIPEVKP--S-AFAAELEKVL------------PTADLLLTKMPHVIPHEDRVLLF  687 (1096)
T ss_pred             HHHHHHHHHHHhccCCCCCcchhhcCCCCCh--h-HHHHHHHhhc------------ccceeEeccCCcccChHHHHHHH
Confidence            9999999999999999999999999998762  2 2222222211            12236788999999999999999


Q ss_pred             HHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHccCC-CCCCceEEEEeccCCCCCcccccCcchHHHHH
Q 045956          758 REFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGS-RLKSSIHVSFVSECGLPEAGLDYGGLSKEFLT  836 (1150)
Q Consensus       758 ~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~~~-~lk~~l~V~F~gE~G~~EaGiD~GG~~REFf~  836 (1150)
                      |+++++||+.+++.+....++.....|+|||++|+||+|+||+..+. .+|+.|+|+|+||+|++|||||+||++|||++
T Consensus       688 R~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLe  767 (1096)
T KOG4427|consen  688 REFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLE  767 (1096)
T ss_pred             HHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccCCcccccCccchHHHHHH
Confidence            99999999999988777666666689999999999999999999765 89999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHhCCCC--Chhh
Q 045956          837 DISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYS--FLDE  914 (1150)
Q Consensus       837 ~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Llg~~~--~l~D  914 (1150)
                      ++.+.+|||.+|||.+|++ ++.+||+|.++.+++++++|+|+||++|||+|+|+++|+||+++|+.+++|+..  .+|+
T Consensus       768 eiiKkvFdp~lnLFstTs~-d~~LyPSPts~~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DE  846 (1096)
T KOG4427|consen  768 EIIKKVFDPELNLFSTTST-DRRLYPSPTSYHHENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDE  846 (1096)
T ss_pred             HHHHHHhcccccccccCCC-CceecCCchhhhhhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhh
Confidence            9999999999999999975 689999999999999999999999999999999999999999999999999875  8999


Q ss_pred             hhhcCHHHHhhHHHHhhccCccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhhchHHHHHH
Q 045956          915 LSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQIFPFSNA  994 (1150)
Q Consensus       915 L~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~a  994 (1150)
                      |.++|||+||||.++|+|+||+.||+|+|+|++|..|+..++||+|||++|+||++||..|||.|++|+||+|+++|+.|
T Consensus       847 Ls~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA~~rmnrqi~eqt~A  926 (1096)
T KOG4427|consen  847 LSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMAHFRMNRQIVEQTNA  926 (1096)
T ss_pred             ccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhc-CCHHHHhhcceeecC
Q 045956          995 FYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEG-FEPKERCMLLKFVTS 1073 (1150)
Q Consensus       995 Fr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~-fs~eer~~fLkFvTG 1073 (1150)
                      |.+||+++|.|+||++|+|.|||+||+|++.+||++||++||+|.|||+.+|++|+|||+|++. |++|||+.||||||+
T Consensus       927 f~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTS 1006 (1096)
T KOG4427|consen  927 FYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTS 1006 (1096)
T ss_pred             HHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999975 999999999999999


Q ss_pred             cCCCCCCCcccCCCcceeee--eccCCccccccC-----------CCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHH
Q 045956         1074 CSRAPLLGFKHLQPSFTIHK--VACDSSLWAVIG-----------GQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYA 1140 (1150)
Q Consensus      1074 ssrlP~~Gf~~L~p~f~I~~--~~~d~~~~~~~~-----------g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~A 1140 (1150)
                      |||+|+.||++|+|||.|++  |.+|.+.|++++           |++.+||||||||||+||||+|+.+.+|||||+||
T Consensus      1007 CSrpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKLPnY~kkStlreKLrYA 1086 (1096)
T KOG4427|consen 1007 CSRPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKLPNYKKKSTLREKLRYA 1086 (1096)
T ss_pred             cCCCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhCCCcchhHHHHHHHHHH
Confidence            99999999999999999995  456778888877           89999999999999999999999999999999999


Q ss_pred             HHcCCCccCC
Q 045956         1141 ISSNAGFELS 1150 (1150)
Q Consensus      1141 I~~~~GF~LS 1150 (1150)
                      |.+++|||||
T Consensus      1087 IssntGFELS 1096 (1096)
T KOG4427|consen 1087 ISSNTGFELS 1096 (1096)
T ss_pred             hhcCCCcccC
Confidence            9999999998

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] Back     alignment and domain information
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1150
3jvz_C385 E2~ubiquitin-Hect Length = 385 2e-53
3jw0_C385 E2~ubiquitin-Hect Length = 385 2e-53
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 3e-53
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 6e-52
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 3e-51
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 1e-47
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 3e-47
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 1e-46
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 5e-46
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 3e-45
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 6e-45
3pt3_A118 Crystal Structure Of The C-Terminal Lobe Of The Hum 1e-04
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure 
Iteration: 1

 Score =  207 bits (528), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/409 (33%), Positives = 219/409 (53%), Gaps = 39/409 (9%)
Query: 748  FPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSR-- 805
            F F+++ + FR+ +       K   D+        E+ + R +I E+ +R++ S+     
Sbjct: 5    FEFKQKYDYFRKKL-------KKPADIPN----RFEMKLHRNNIFEESYRRIMSVKRPDV 53
Query: 806  LKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAA 865
            LK+ + + F SE      GLDYGG+++E+   +SK  F P YGLF  ++T +  L  N  
Sbjct: 54   LKARLWIEFESE-----KGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPN 108
Query: 866  ARYL-ENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYR 924
            +    E+ +  F F+GRV G A++ G LLD  F   F + +LG+   L+++ ++D E Y 
Sbjct: 109  SGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYN 168
Query: 925  NLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKL 984
            +L ++   + D  EL L F + EE+FG+ + ++LKP G +  VTNENK +Y+  +  ++ 
Sbjct: 169  SLKWI--LENDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRF 226
Query: 985  NRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSE 1044
              ++    NAF  G T+L+    +K+F+ +E  +LL  G  D+DV+D R+++ Y  GY  
Sbjct: 227  VNRVQKQMNAFLEGFTELLPIDLIKIFDENEL-ELLMCGLGDVDVNDWRQHSIYKNGYCP 285
Query: 1045 GSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSS 1099
                I+ FW+ V   + ++R  LL+FVT  SR P+ GF  L  S     FTI +      
Sbjct: 286  NHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQ------ 339
Query: 1100 LWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFE 1148
             W        E+LP A T +N L LP Y+    L+ KLL A+ +  GFE
Sbjct: 340  -WG-----SPEKLPRAHTAFNRLDLPPYETFEDLREKLLMAVENAQGFE 382
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5 Hect Domain Length = 118 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1150
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-165
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-158
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-153
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-152
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-150
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 1e-146
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 2e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
 Score =  492 bits (1270), Expect = e-165
 Identities = 127/419 (30%), Positives = 199/419 (47%), Gaps = 35/419 (8%)

Query: 739  SVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQ 798
             V+   PH+  F+ + + FR         +++     G     + + VRR H+ ED +R+
Sbjct: 15   EVLFQGPHM-DFDVKRKYFR---------QELERLDEGLRKEDMAVHVRRDHVFEDSYRE 64

Query: 799  LNSL-GSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSD 857
            L+      +K+ +++ F  E      G D GGL +E+   IS+  F P Y LF  +    
Sbjct: 65   LHRKSPEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDR 119

Query: 858  RLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELST 917
                 N ++    N +  F+F+GR+V KA+Y+  LL+  F+  F + +LG+     ++ +
Sbjct: 120  VTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMES 179

Query: 918  LDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVH 977
             D   Y+ L+Y+   D       L F+   + FG   V +LKP G +  VT ENK +YVH
Sbjct: 180  EDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVH 239

Query: 978  AMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTR 1037
             +   ++   I     AF  G  ++I    + +F   E  +LL  G   ID+DDL+ NT 
Sbjct: 240  LVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQEL-ELLISGLPTIDIDDLKSNTE 298

Query: 1038 YTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIH 1092
            Y   Y   S  I+ FW  +  F+  +R   L+FVT  S+ PL GF  L+       F IH
Sbjct: 299  Y-HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIH 357

Query: 1093 KVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNA-GFELS 1150
            +             +  +RLPSA TC+N L LP Y+    L+  LL AI   + GF L+
Sbjct: 358  RD-----------DRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1150
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 100.0
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 96.67
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 96.19
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 95.42
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 94.89
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.44
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 93.79
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 93.43
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 83.77
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 83.26
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 81.21
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
Probab=100.00  E-value=6.9e-89  Score=790.44  Aligned_cols=384  Identities=33%  Similarity=0.600  Sum_probs=342.8

Q ss_pred             ccccccCCcccChhhHHHHHHHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHcc-CCCCCCceEEEEec
Q 045956          738 GSVVTTTPHVFPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSL-GSRLKSSIHVSFVS  816 (1150)
Q Consensus       738 ~~il~~~Pf~~pFe~Rv~~F~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~-~~~lk~~l~V~F~g  816 (1150)
                      ..+|.+-|+ ++|+.|+++|+..+++.+.         +..++.++++|||++|++||+++++.. +.++|++|+|+|+|
T Consensus        14 ~~~~~~~~~-~~f~~k~~~F~~~l~~~~~---------~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g   83 (405)
T 3h1d_A           14 LEVLFQGPH-MDFDVKRKYFRQELERLDE---------GLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG   83 (405)
T ss_dssp             CGGGGCSTT-SCHHHHHHHHHHHHHHHTT---------TCCCCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT
T ss_pred             hHHhhcCCC-cCHHHHHHHHHHHHHhhhc---------CCCCCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECC
Confidence            367888898 6999999999987753211         112357899999999999999999974 56799999999999


Q ss_pred             cCCCCCcccccCcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCc
Q 045956          817 ECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYA  896 (1150)
Q Consensus       817 E~G~~EaGiD~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~  896 (1150)
                      |     +|+|+||++||||+++++|+|+|+||||..+++++..|+|||.+...++++++|+|+|++||+|||+|.++|++
T Consensus        84 E-----~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~  158 (405)
T 3h1d_A           84 E-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECY  158 (405)
T ss_dssp             C-----CSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred             C-----CCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCC
Confidence            8     68999999999999999999999999999998777778899988766889999999999999999999999999


Q ss_pred             CcHHHHHHHhCCCCChhhhhhcCHHHHhhHHHHhhccCccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHH
Q 045956          897 FSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYV  976 (1150)
Q Consensus       897 F~~~f~k~Llg~~~~l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI  976 (1150)
                      ||++|||+|+|++++++||+++||++|++|++|++++.+-.+++++|+++.+.+|...++||+|||++|+||++||.+||
T Consensus       159 F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV  238 (405)
T 3h1d_A          159 FTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYV  238 (405)
T ss_dssp             ECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHH
T ss_pred             ccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHH
Confidence            99999999999999999999999999999999997643222357888888788898889999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHH
Q 045956          977 HAMADYKLNRQIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVV 1056 (1150)
Q Consensus       977 ~~~~~~~l~~~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl 1056 (1150)
                      +++++|+++++++.|++||++||++|||.++|++|+|+||+.+||| .++||+++|++||.|. ||+++|++|+|||+|+
T Consensus       239 ~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G-~~~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~  316 (405)
T 3h1d_A          239 HLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISG-LPTIDIDDLKSNTEYH-KYQSNSIQIQWFWRAL  316 (405)
T ss_dssp             HHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHC-CCCCCHHHHHHTEEEE-SSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCC-CCCCCHHHHHhhCccc-CCCCCCchHhhHHHHH
Confidence            9999999999999999999999999999999999999999999999 5799999999999997 7999999999999999


Q ss_pred             hcCCHHHHhhcceeecCcCCCCCCCcccCCC-----cceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHH
Q 045956         1057 EGFEPKERCMLLKFVTSCSRAPLLGFKHLQP-----SFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSS 1131 (1150)
Q Consensus      1057 ~~fs~eer~~fLkFvTGssrlP~~Gf~~L~p-----~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e 1131 (1150)
                      ++||+|||++||+|||||+|+|++||+.++|     +|+|++.           +.++++||+||||||+|+||.|+|+|
T Consensus       317 ~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~-----------~~~~~~LP~a~TCfn~L~LP~Yss~e  385 (405)
T 3h1d_A          317 RSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRD-----------DRSTDRLPSAHTCFNQLDLPAYESFE  385 (405)
T ss_dssp             HHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCEEEEEE-----------CSCTTSCCEEEGGGTEEEEECCSSHH
T ss_pred             HhCCHHHHHHHHHHHcCCCCCCCCccccccccCCCceEEEeeC-----------CCCCCCCccceeccCEeECCCCCCHH
Confidence            9999999999999999999999999999985     7888763           33568999999999999999999999


Q ss_pred             HHHHHHHHHHHc-CCCccC
Q 045956         1132 TLKAKLLYAISS-NAGFEL 1149 (1150)
Q Consensus      1132 ~LreKLl~AI~~-~~GF~L 1149 (1150)
                      +||+||++||++ ++||+|
T Consensus       386 ~l~ekL~~AI~e~~~GFgl  404 (405)
T 3h1d_A          386 KLRHMLLLAIQEASEGFGL  404 (405)
T ss_dssp             HHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhCCCCcCC
Confidence            999999999998 589997
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1150
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-100
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 2e-93
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  320 bits (820), Expect = e-100
 Identities = 120/399 (30%), Positives = 197/399 (49%), Gaps = 37/399 (9%)

Query: 749  PFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLGSR-LK 807
             F  ++  FR     + +   +            +I V R  + ED F+Q+ +L    L+
Sbjct: 3    GFRWKLAHFRYLCQSNALPSHV------------KINVSRQTLFEDSFQQIMALKPYDLR 50

Query: 808  SSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAAR 867
              ++V F  E      GLDYGGL++E+   +S     P Y LF     ++  L  N A+ 
Sbjct: 51   RRLYVIFRGE-----EGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST 105

Query: 868  YLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLLGRYSFLDELSTLDPELYRNLM 927
               + +  F F+GR +  AL+ G  +D  FS  F +++L +   + +L ++D E Y +L+
Sbjct: 106  INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLI 165

Query: 928  YVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNRQ 987
            +++  + +   L + F+V  E  GK    +LK GG +  VT ENK +Y+  M +++ +R 
Sbjct: 166  WIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRG 225

Query: 988  IFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSR 1047
            +   + AF  G  +++   WL+ F+  E  +++  G  ++D+ D ++NT Y   Y+  S+
Sbjct: 226  VQEQTKAFLDGFNEVVPLQWLQYFDEKEL-EVMLCGMQEVDLADWQRNTVYR-HYTRNSK 283

Query: 1048 TIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPS-----FTIHKVACDSSLWA 1102
             I  FW+ V+  + + R  LL+FVT   R PL GF  L  S     F I KV  D+    
Sbjct: 284  QIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDT---- 339

Query: 1103 VIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI 1141
                     LP + TC+N L LP YK    LK KLL+AI
Sbjct: 340  --------WLPRSHTCFNRLDLPPYKSYEQLKEKLLFAI 370
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1150
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 88.65
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 83.81
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 80.21
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-79  Score=702.56  Aligned_cols=367  Identities=32%  Similarity=0.583  Sum_probs=339.7

Q ss_pred             cChhhHHHHHHHHHhhhHHHhhhccCCCCCCCceeEEEecCCcHHHHHHHHHHccC-CCCCCceEEEEeccCCCCCcccc
Q 045956          748 FPFEERVEMFREFISMDKVSRKIAGDVAGPGSRSIEIVVRRGHIVEDGFRQLNSLG-SRLKSSIHVSFVSECGLPEAGLD  826 (1150)
Q Consensus       748 ~pFe~Rv~~F~~~i~~~k~~~~~~~~~~~~~~~~~~i~VrR~~lleDa~~~l~~~~-~~lk~~l~V~F~gE~G~~EaGiD  826 (1150)
                      +.|+.|...||.......            -+.+++|+|||++|++|+++++.+.+ .+++++|+|+|+||     +|+|
T Consensus         2 ~~~~~~~~~f~~~~~~~~------------~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE-----~g~D   64 (374)
T d1nd7a_           2 MGFRWKLAHFRYLCQSNA------------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE-----EGLD   64 (374)
T ss_dssp             CTHHHHHHHHHHHHHHTC------------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTT-----CCCC
T ss_pred             ccHHHHHHHHHHHHhhcC------------CCCceEEEEccccHHHHHHHHHHhcCHHHhCCCeEEEECCC-----CccC
Confidence            479999999987654210            12378999999999999999999965 57899999999998     6899


Q ss_pred             cCcchHHHHHHHHHhhcCCCCCceeecCCCCcccccCcccccccchhHHHHHHhHHHHHHHhcCCcccCcCcHHHHHHHh
Q 045956          827 YGGLSKEFLTDISKSAFAPEYGLFSQTSTSDRLLIPNAAARYLENGIQMFEFLGRVVGKALYEGILLDYAFSHVFVQKLL  906 (1150)
Q Consensus       827 ~GG~~REFf~~l~~elf~p~~gLF~~t~~~~~~l~Pnp~~~~~~~~l~~f~flGrllGkAL~~g~~l~l~F~~~f~k~Ll  906 (1150)
                      +|||+||||+++++|+++|++|+|..+++++..++|||.+...++++++|+|+|+++|+||++|.+++++||++|||+|+
T Consensus        65 ~GG~~rEff~~l~~el~~p~~~lf~~~~~~~~~~~~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Ll  144 (374)
T d1nd7a_          65 YGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRML  144 (374)
T ss_dssp             CTHHHHHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHT
T ss_pred             CCccHHHHHHHHHHHHcCCccCCeeecCCCCcccccCCccccChhHHHHHHHhHHHHHHHHHcCcccCCCccHHHHHHhc
Confidence            99999999999999999999999999987777888999887778889999999999999999999999999999999999


Q ss_pred             CCCCChhhhhhcCHHHHhhHHHHhhccCccccccceeeEEeccCCceeeEeccCCCCCcccccccHHHHHHHHHHHHHhh
Q 045956          907 GRYSFLDELSTLDPELYRNLMYVKHYDGDVKELCLDFTVTEESFGKRHVIELKPGGGDTSVTNENKMQYVHAMADYKLNR  986 (1150)
Q Consensus       907 g~~~~l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~G~~~~vELipgG~~i~VT~~Nk~eYI~~~~~~~l~~  986 (1150)
                      |++++++||+++||++|++|.++++++.+..+++++|+++.+..|...++||+|||++++||.+|+.+||+++++|++++
T Consensus       145 g~~~t~~DL~~iD~~~~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~  224 (374)
T d1nd7a_         145 SKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSR  224 (374)
T ss_dssp             TCCCCHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHhCHHHHHhHHHHHhccccccccceeEEEEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999987766667899999999899999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhcccccCcccccCCCHHHHHHhhcCCCCccChhhhhhcccccCCCCCCChHHHHHHHHHhcCCHHHHhh
Q 045956          987 QIFPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCM 1066 (1150)
Q Consensus       987 ~i~~q~~aFr~Gf~~Vip~~~L~lFs~~EL~~Li~G~~~~iD~~dLk~~t~Y~gGy~~~~~~I~~FWevl~~fs~eer~~ 1066 (1150)
                      +++.|++||++||++|+|..++++|+|+||+.++|| .+++|+++|+++|.|. ||+++|++|+|||+++++||+|||++
T Consensus       225 ~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG-~~~id~~~l~~~~~y~-gy~~~s~~i~~fw~vl~~~t~ee~~~  302 (374)
T d1nd7a_         225 GVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCG-MQEVDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRMR  302 (374)
T ss_dssp             TTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHC-CCCCCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHH
T ss_pred             cHHHHHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCC-CCCCCHHHHhhheeec-cCCCCCHHHHHHHHHHHhcCHHHHHH
Confidence            999999999999999999999999999999999999 6789999999999997 79999999999999999999999999


Q ss_pred             cceeecCcCCCCCCCcccCCC-----cceeeeeccCCccccccCCCCCCCCCeeecccCeeccCCCCCHHHHHHHHHHHH
Q 045956         1067 LLKFVTSCSRAPLLGFKHLQP-----SFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAI 1141 (1150)
Q Consensus      1067 fLkFvTGssrlP~~Gf~~L~p-----~f~I~~~~~d~~~~~~~~g~~~~rLPtAsTCfn~LkLP~Yss~e~LreKLl~AI 1141 (1150)
                      ||+||||++|+|++||+.+.|     +|+|.+            +.++++||+||||||+|+||.|+|+|+||+||++||
T Consensus       303 fL~FvTGs~rlP~~G~~~l~~~~~~~~~~i~~------------~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI  370 (374)
T d1nd7a_         303 LLQFVTGTCRLPLGGFAELMGSNGPQKFCIEK------------VGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAI  370 (374)
T ss_dssp             HHHHHHSCSCCCTTCGGGCEETTEECCEEEEC------------CSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHH
T ss_pred             hheeecCCCCCCCcchhhhcccCCCCceeecc------------CCCCCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999854     466654            224579999999999999999999999999999999


Q ss_pred             HcCC
Q 045956         1142 SSNA 1145 (1150)
Q Consensus      1142 ~~~~ 1145 (1150)
                      ++++
T Consensus       371 ~~~e  374 (374)
T d1nd7a_         371 EETE  374 (374)
T ss_dssp             HSCC
T ss_pred             HhcC
Confidence            9975
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure