Citrus Sinensis ID: 045960

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK
Secondary Structure (PSIPRED)
cEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHccHHHHHHHHHHcccccccEEEEcccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHcccEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHcHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEEcHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHcccccHHHHcHccccccccccHHHHHHHHHHcccEEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcc
Coil and Loop (DISEMBL)
cirfadlgcssgpnallptwEAIDSLDKIChrlnrkppvlhsflndlprsdfntvFKSLPSFYERLRTekghefgscfvaaspgsfytrlfphnfldFVYSSYALHwlsrmpkgqgnesDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYndnfhatpgepMLMVLKDMISEglaeeskvksfedfpiyraSVDEVKQIVKKEgsfdiqeveTFNVSWLVGFVdgvdnkgsdkyargkyVTKHVRAVGESFLanlfddatvDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK
Flexible Loop (DISEMBL)
cirfadlgcssgpnalLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKegsfdiqevetfNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFatkvtdvvldkgrGAYASLLISLVKK
Low Complexity Region (SEG)
CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK
Disordered region (IsUnstruct)
****ADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRM*********VHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISL***
Disordered Region (DISOPRED)
CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLR***GHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK
Disordered Region (DISEMBL)
CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK
Disordered Region (DISPRO)
CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVG***********KYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q9AVL9	385	Probable caffeine synthas	N/A	no	0.993	0.774	0.411	7e-64
Q9AVK1	385	Probable caffeine synthas	N/A	no	0.993	0.774	0.423	1e-63
Q8H0D2	384	3,7-dimethylxanthine N-me	N/A	no	0.986	0.770	0.418	2e-63
A4GE69	372	7-methylxanthosine syntha	N/A	no	0.966	0.779	0.430	5e-62
Q9AVK0	372	7-methylxanthosine syntha	N/A	no	0.966	0.779	0.430	6e-62
A4GE70	384	3,7-dimethylxanthine N-me	N/A	no	0.993	0.776	0.405	1e-61
Q9AVJ9	378	Monomethylxanthine methyl	N/A	no	0.986	0.783	0.413	2e-60
Q8H0D3	384	Caffeine synthase 1 OS=Co	N/A	no	0.993	0.776	0.402	3e-60
Q8H0G0	384	Theobromine synthase 2 OS	N/A	no	0.986	0.770	0.403	6e-60
Q84PP7	384	Monomethylxanthine methyl	N/A	no	0.986	0.770	0.403	8e-60

>sp|Q9AVL9|CS4_COFAR Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1

 Score =  244 bits (622), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 135/328 (41%), Positives = 199/328 (60%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           CI+ ADLGC+SGPN LL  W+ + S+DK+   +  +   P +  FL DL ++DFN+VF  
Sbjct: 54  CIKVADLGCASGPNTLLTVWDTVQSIDKVKQEMKNELERPTIQVFLTDLFQNDFNSVFML 113

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY +L  E G + GSC +AA PGSF+ RLFP   + F++SSY+L +LS++P G    
Sbjct: 114 LPSFYRKLEKENGRKIGSCLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTE 173

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161
                        + +   V KA+L+QF  DF+TFL+ RSEEL S+GRM+LT +   +  
Sbjct: 174 LGITANKRSIYSSKASPPPVQKAYLDQFTKDFTTFLRMRSEELLSRGRMLLTCICKGDEC 233

Query: 162 ATPG--EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
             P   + + M + D+++EG   E K+ SF + PIY ASV+EVK +V++EGSF+I  ++T
Sbjct: 234 DGPNTMDLLEMAINDLVAEGRLGEEKLDSF-NVPIYTASVEEVKCMVEEEGSFEILYLQT 292

Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           F + +  GF    D +        SD++AR  +V   +R+V E  LA+ F +A + +I  
Sbjct: 293 FKLRYDAGFSIDDDCQVRSHSPVYSDEHARAAHVASLIRSVYEPILASHFGEAIIPDIFH 352

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           RFAT    V+   G+G Y +L+ISL KK
Sbjct: 353 RFATNAAKVI-RLGKGFYNNLIISLAKK 379

May be involved in the biosynthesis of caffeine.
Coffea arabica (taxid: 13443)

>sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 139/328 (42%), Positives = 198/328 (60%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           CI+ ADLGC+SGPN LL   + + S+DK+   +  +   P +  FL DL ++DFN+VF  
Sbjct: 54  CIKVADLGCASGPNTLLTVRDIVQSIDKVRQEMKNELERPTIQVFLTDLFQNDFNSVFML 113

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY +L  E G + GSC +AA PGSF+ RLFP   + F++SSY+L +LS++P G    
Sbjct: 114 LPSFYRKLEKENGRKIGSCLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTE 173

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY-NDNF 160
                        + +   V KA+L+QF  DF+TFL+ RSEEL S+GRM+LT +   D F
Sbjct: 174 LGITANKRSIYSSKASPPPVQKAYLDQFTKDFTTFLRIRSEELLSRGRMLLTCICKGDEF 233

Query: 161 HATPGEPML-MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
                  +L M + D++ EG  EE K+ SF + PIY ASV+E+K IV++EGSF+I  +ET
Sbjct: 234 DGPNTMDLLEMAINDLVVEGHLEEEKLDSF-NVPIYAASVEELKCIVEEEGSFEILYLET 292

Query: 220 FNVSWLVGF-------VDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           F + +  GF       V     + SD++AR  +V   +R+V E  LAN F +A + +I  
Sbjct: 293 FKLRYDAGFSIDDDCQVRSHSPEYSDEHARAAHVASLLRSVYEPILANHFGEAIIPDIFH 352

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           RFAT    V+   G+G Y +L+ISL KK
Sbjct: 353 RFATNAAKVI-RLGKGFYNNLIISLAKK 379

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q8H0D2|DXMT1_COFAR 3,7-dimethylxanthine N-methyltransferase OS=Coffea arabica GN=DXMT1 PE=1 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/330 (41%), Positives = 194/330 (58%), Gaps = 34/330 (10%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHR----LNRKPPVLHSFLNDLPRSDFNTVF 56
           CI+ ADLGC+SGPN LL   + + S+DK+       L R  P +  FLNDL ++DFN+VF
Sbjct: 53  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELER--PTIQIFLNDLFQNDFNSVF 110

Query: 57  KSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
           KSLPSFY +L  E G + GSC + A PGSFY RLFP   + F++S Y LHWLS++P G  
Sbjct: 111 KSLPSFYRKLEKENGCKIGSCLIGAMPGSFYGRLFPEESMHFLHSCYCLHWLSQVPSGLV 170

Query: 115 ---------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDN 159
                          + +   + KA+L+QF  DF+TFL+  SEEL S+GRM+LT +  ++
Sbjct: 171 TELGISANKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTWICKED 230

Query: 160 FHATPGEPML--MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217
               P    L  M + D++ EG  EE K+ SF + PIY  S +EVK IV++EGSF+I  +
Sbjct: 231 EFENPNSIDLLEMSINDLVIEGHLEEEKLDSF-NVPIYAPSTEEVKCIVEEEGSFEILYL 289

Query: 218 ETFNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEI 270
           ETF V +  GF    D +G        D++AR  +V   VR++ E  +A+ F +A + ++
Sbjct: 290 ETFKVPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIFEPIVASHFGEAILPDL 349

Query: 271 HRRFATKVTDVVLDKGRGAYASLLISLVKK 300
             R A      VL  G+G Y S++ISL KK
Sbjct: 350 SHRIAKNAAK-VLRSGKGFYDSVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of paraxanthine to caffeine. Can also convert 7-methylxanthine to theobromine and theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1

 Score =  238 bits (606), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 139/323 (43%), Positives = 190/323 (58%), Gaps = 33/323 (10%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHR----LNRKPPVLHSFLNDLPRSDFNTVF 56
           CI+ ADLGC+SGPN LL   + + S+DK+       L R  P +  FLNDL  +DFN+VF
Sbjct: 54  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELER--PTIQIFLNDLFPNDFNSVF 111

Query: 57  KSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
           K LPSFY +L  E G + GSC + A PGSFY+RLFP   + F++S Y L WLS++P G  
Sbjct: 112 KLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLV 171

Query: 115 ---------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND- 158
                          + +   V KA+L+QF  DF+TFL+  SEEL S GRM+LT +    
Sbjct: 172 TELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV 231

Query: 159 NFHATPGEPML-MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217
              A     +L M + D++ EG  EE K+ SF + P+Y  S +EVK IV++EGSF+I  +
Sbjct: 232 ELDARNAIDLLEMAINDLVVEGHLEEEKLDSF-NLPVYIPSAEEVKCIVEEEGSFEILYL 290

Query: 218 ETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATK 277
           ETF V +  GF   +D    D++ + +YV   VRAV E  LA+ F +A + +I  RFA  
Sbjct: 291 ETFKVLYDAGF--SID----DEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKH 344

Query: 278 VTDVVLDKGRGAYASLLISLVKK 300
               VL  G+G Y +L+ISL KK
Sbjct: 345 AAK-VLPLGKGFYNNLIISLAKK 366

Involved in the biosynthesis of caffeine. Specific for xanthosine. Cannot use xanthosine 5'-monophosphate (XMP) as substrate. Directly produces 7-methylxanthine, and therefore the methyl transfer and nucleoside cleavage may be coupled. Catalyzes the 7-N-methylation of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/323 (43%), Positives = 190/323 (58%), Gaps = 33/323 (10%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHR----LNRKPPVLHSFLNDLPRSDFNTVF 56
           CI+ ADLGC+SGPN LL   + + S+DK+       L R  P +  FLNDL  +DFN+VF
Sbjct: 54  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELER--PTIQIFLNDLFPNDFNSVF 111

Query: 57  KSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
           K LPSFY +L  E G + GSC + A PGSFY+RLFP   + F++S Y L WLS++P G  
Sbjct: 112 KLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLV 171

Query: 115 ---------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND- 158
                          + +   V KA+L+QF  DF+TFL+  SEEL S GRM+LT +    
Sbjct: 172 TELGISTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV 231

Query: 159 NFHATPGEPML-MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217
              A     +L M + D++ EG  EE K+ SF + P+Y  S +EVK IV++EGSF+I  +
Sbjct: 232 ELDARNAIDLLEMAINDLVVEGHLEEEKLDSF-NLPVYIPSAEEVKCIVEEEGSFEILYL 290

Query: 218 ETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATK 277
           ETF V +  GF   +D    D++ + +YV   VRAV E  LA+ F +A + +I  RFA  
Sbjct: 291 ETFKVLYDAGF--SID----DEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKH 344

Query: 278 VTDVVLDKGRGAYASLLISLVKK 300
               VL  G+G Y +L+ISL KK
Sbjct: 345 AAK-VLPLGKGFYNNLIISLAKK 366

Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

>sp|A4GE70|DXMT1_COFCA 3,7-dimethylxanthine N-methyltransferase OS=Coffea canephora GN=DXMT1 PE=1 SV=1

 Score =  236 bits (603), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/328 (40%), Positives = 190/328 (57%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           C +  DLGC+SGPN      + + S+DK+      +   P +  FLNDL ++DFN+VFK 
Sbjct: 53  CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKL 112

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY  L  E G + GSC + A PGSFY+RLFP   + F++S Y LHWLS++P G    
Sbjct: 113 LPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY-NDNF 160
                        + +   + KA+L+QF  DF+TFL+  SEEL S+GRM+LT +   D F
Sbjct: 173 LGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEF 232

Query: 161 -HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
            H    + + M + D++ EG  EE K+ SF + PIY  S +EVK+IV++EGSF+I  +ET
Sbjct: 233 DHPNSMDLLEMSINDLVIEGHLEEEKLDSF-NVPIYAPSTEEVKRIVEEEGSFEILYLET 291

Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           FN  +  GF    D +G        D++AR  +V   VR++ E  LA+ F +A + ++  
Sbjct: 292 FNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSH 351

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           R A      VL  G+G Y S++ISL KK
Sbjct: 352 RIAKNAAK-VLRSGKGFYDSVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine to theobromine and of theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9AVJ9|MXMT1_COFAR Monomethylxanthine methyltransferase 1 OS=Coffea arabica GN=MXMT1 PE=1 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 134/324 (41%), Positives = 191/324 (58%), Gaps = 28/324 (8%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHR----LNRKPPVLHSFLNDLPRSDFNTVF 56
           CI+ ADLGC+SGPN LL   + + S+DK+       L R  P +  FLNDL ++DFN+VF
Sbjct: 53  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEEKNELER--PTIQIFLNDLFQNDFNSVF 110

Query: 57  KSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
           K LPSFY +L  E G + GSC ++A PGSFY RLFP   + F++S Y++HWLS++P G  
Sbjct: 111 KLLPSFYRKLEKENGRKIGSCLISAMPGSFYGRLFPEESMHFLHSCYSVHWLSQVPSGLV 170

Query: 115 ---------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN-D 158
                          +G    V KA+L+QF  DF+TFL+  S+EL S+GRM+LT +   D
Sbjct: 171 IELGIGANKGSIYSSKGCRPPVQKAYLDQFTKDFTTFLRIHSKELFSRGRMLLTCICKVD 230

Query: 159 NF-HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217
            F    P + + M + D+I EGL EE K+ SF + P +  S +EVK IV++EGS +I  +
Sbjct: 231 EFDEPNPLDLLDMAINDLIVEGLLEEEKLDSF-NIPFFTPSAEEVKCIVEEEGSCEILYL 289

Query: 218 ETFNVSWLVGF-VDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFAT 276
           ETF   +   F +D      S +  + +YV   +R+V E  LA+ F +A + ++  R A 
Sbjct: 290 ETFKAHYDAAFSIDDDYPVRSHEQIKAEYVASLIRSVYEPILASHFGEAIMPDLFHRLAK 349

Query: 277 KVTDVVLDKGRGAYASLLISLVKK 300
                VL  G+G Y +L+ISL KK
Sbjct: 350 HAAK-VLHMGKGCYNNLIISLAKK 372

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of paraxanthine to caffeine. Has a 5-fold preference for 7mX.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|Q8H0D3|CCS1_COFAR Caffeine synthase 1 OS=Coffea arabica GN=CCS1 PE=1 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 132/328 (40%), Positives = 189/328 (57%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           C +  DLGC+SGPN      + + S+DK+      +   P +  FLNDL ++DFN+VFK 
Sbjct: 53  CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKL 112

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY  L  E G + GSC + A PGSFY+RLFP   + F++S Y LHWLS++P G    
Sbjct: 113 LPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY-NDNF 160
                        + +   + KA+L+QF  DF+TFL+  SEEL S+GRM+LT +   D F
Sbjct: 173 LGISANKGCIYSSKASGPPIKKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEF 232

Query: 161 -HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
            H    + + M + D++ EG  EE K+ SF + PIY  S +EVK+IV++EGSF+I  +ET
Sbjct: 233 DHPNSMDLLEMSINDLVIEGHLEEEKLDSF-NVPIYAPSTEEVKRIVEEEGSFEILYLET 291

Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           F   +  GF    D +G        D++AR  +V   VR++ E  LA+ F +A + ++  
Sbjct: 292 FYAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSH 351

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           R A      VL  G+G Y S++ISL KK
Sbjct: 352 RIAKNAAK-VLRSGKGFYDSVIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q8H0G0|CTS2_COFAR Theobromine synthase 2 OS=Coffea arabica GN=CTS2 PE=1 SV=1

 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 191/330 (57%), Gaps = 34/330 (10%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHR----LNRKPPVLHSFLNDLPRSDFNTVF 56
           CI+ ADLGC+SGPN LL   + + S+DK+       L R  P +  FLNDL ++DFN+VF
Sbjct: 53  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEEKNELER--PTIQIFLNDLFQNDFNSVF 110

Query: 57  KSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
           K LPSFY +L  E G + GSC ++A PGSFY RLFP   + F++S Y+ HWLS++P G  
Sbjct: 111 KLLPSFYRKLEKENGRKIGSCLISAMPGSFYGRLFPEESMHFIHSCYSFHWLSQVPSGLV 170

Query: 115 ---------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN-D 158
                          + +   V KA+L+QF  DF+TFL+  S+EL S+GRM+LT +   D
Sbjct: 171 IELGISANKGSIYSSKASRPPVQKAYLDQFTKDFTTFLRIHSKELFSRGRMLLTCICKVD 230

Query: 159 NF-HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217
            +    P + + M + D+I EG  EE K+ SF + P +  S +EVK IV++EGSF+I  +
Sbjct: 231 EYDEPNPLDLLDMAINDLIVEGHLEEEKLASF-NLPFFTPSAEEVKCIVEEEGSFEILYL 289

Query: 218 ETFNVSWLVGFVDGVD-------NKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEI 270
           ETF   +  GF    D           D++ + +YV   +R+V E  LA+ F +A + ++
Sbjct: 290 ETFKAHYDAGFSIDDDYPVRSHFQVYGDEHIKAEYVASLIRSVYEPILASHFGEAIMPDL 349

Query: 271 HRRFATKVTDVVLDKGRGAYASLLISLVKK 300
             R A      VL  G+G Y +L+ISL KK
Sbjct: 350 FHRLAKHAAK-VLHLGKGCYNNLIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine. Does not have 1-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

>sp|Q84PP7|MXMT2_COFAR Monomethylxanthine methyltransferase 2 OS=Coffea arabica GN=MXMT2 PE=1 SV=1

 Score =  230 bits (587), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 192/330 (58%), Gaps = 34/330 (10%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHR----LNRKPPVLHSFLNDLPRSDFNTVF 56
           CI+ ADLGC+SGPN LL   + + S+DK+       L R  P +  FLNDL ++DFN+VF
Sbjct: 53  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEEKNELER--PTIQIFLNDLFQNDFNSVF 110

Query: 57  KSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
           K LPSFY +L  E G + GSC ++A PGSFY RLFP   + F++S Y++HWLS++P G  
Sbjct: 111 KLLPSFYRKLEKENGRKIGSCLISAMPGSFYGRLFPEESMHFLHSCYSVHWLSQVPSGLV 170

Query: 115 ---------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN-D 158
                          + +   V KA+L+QF  DF+TFL+  S+EL S+GRM+LT +   D
Sbjct: 171 IELGIGANKGSIYSSKASRPPVQKAYLDQFTKDFTTFLRIHSKELFSRGRMLLTCICKVD 230

Query: 159 NF-HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217
            +    P + + M + D+I EG  EE K+ SF + P +  S +EVK IV++EGSF+I  +
Sbjct: 231 EYDEPNPLDLLDMAINDLIVEGHLEEEKLASF-NLPFFTPSAEEVKCIVEEEGSFEILYL 289

Query: 218 ETFNVSWLVGFVDGVD-------NKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEI 270
           ETF   +  GF    D           D++ + +YV   +R+V E  LA+ F +A + ++
Sbjct: 290 ETFKAHYDAGFSIDDDYPVRSHFQVYGDEHIKAEYVASLIRSVYEPILASHFGEAIMPDL 349

Query: 271 HRRFATKVTDVVLDKGRGAYASLLISLVKK 300
             R A      VL  G+G Y +L+ISL KK
Sbjct: 350 FHRLAKHAAK-VLHLGKGCYNNLIISLAKK 378

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and with a lower activity of paraxanthine to caffeine.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
255587698	310	Benzoate carboxyl methyltransferase, put	0.973	0.941	0.456	1e-71
225447527	383	PREDICTED: probable caffeine synthase 4-	0.99	0.775	0.432	1e-70
296085033	549	unnamed protein product [Vitis vinifera]	0.99	0.540	0.432	1e-70
255587606	375	Jasmonate O-methyltransferase, putative	0.993	0.794	0.432	2e-69
167613941	366	carboxyl methyltransferase 4 [Humulus lu	0.99	0.811	0.431	2e-67
359745159	384	N-methyltransferase [Coffea arabica]	0.993	0.776	0.420	7e-63
356566925	369	PREDICTED: salicylate O-methyltransferas	0.99	0.804	0.406	1e-62
30023550	384	3,7-dimethylxanthine N-methyltransferase	0.993	0.776	0.417	4e-62
75168238	385	RecName: Full=Probable caffeine synthase	0.993	0.774	0.411	4e-62
26453381	385	tentative caffeine synthase 4 [Coffea ar	0.993	0.774	0.411	4e-62

>gi|255587698|ref|XP_002534362.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223525428|gb|EEF28019.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/313 (45%), Positives = 205/313 (65%), Gaps = 21/313 (6%)

Query: 4   FADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFY 63
            AD+GCSSGPNA LP WE I+++DK C++LNRKPP+L  FLNDLP +DFN++FKSLP+ Y
Sbjct: 1   MADMGCSSGPNAFLPMWEIIEAIDKTCNQLNRKPPILQVFLNDLPGNDFNSIFKSLPNLY 60

Query: 64  ERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPK---GQGN--- 117
           ++L  EKG +FG CF+AA PGSFY RLF  + L FV+SSY+LHW S +PK    +GN   
Sbjct: 61  KKLEEEKG-KFGPCFIAAMPGSFYGRLFLPHSLHFVHSSYSLHWCSEVPKIPLNKGNIYV 119

Query: 118 ----ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL-------YNDNFHATPGE 166
                  VHKA+L+QFE DF+TFL+ RS E+   G+MV+T++        +D +  T  E
Sbjct: 120 AKTSPPSVHKAYLDQFERDFNTFLRSRSAEVIPGGQMVITIIGRDKDMDQSDKYSPTIWE 179

Query: 167 PMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLV 226
              ++L DM+SEGL EESK+ SF + P+Y AS +EVK +++ EGSF+I  +E+F++ W  
Sbjct: 180 LFGIILNDMVSEGLIEESKLDSF-NIPLYAASAEEVKNVIEAEGSFNINRLESFHIGWDA 238

Query: 227 GFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKG 286
             +D       DK+ RG +V    RA  ES L + F    +D + +RF+  + +  ++  
Sbjct: 239 S-IDDHYKASMDKHTRGMWVANCFRAASESILTHHFGGELIDIMFQRFSVGIGE-YMEMA 296

Query: 287 RGAYASLLISLVK 299
            GAY + ++S+ K
Sbjct: 297 DGAYTNHVVSMTK 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447527|ref|XP_002267308.1| PREDICTED: probable caffeine synthase 4-like [Vitis vinifera]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/324 (43%), Positives = 200/324 (61%), Gaps = 27/324 (8%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLP 60
           C++ ADLGCSSGPN  LP WE ID +   C R +R+PP    FLNDLP++DFN +F+SL 
Sbjct: 51  CLKIADLGCSSGPNTFLPLWEIIDCIGATCSRFSREPPAFQIFLNDLPQNDFNAIFESLA 110

Query: 61  SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNES- 119
            FYER+  EK      CF+A  PGSF+ RLFP   + F +SSY+LHWLS++P+G  +ES 
Sbjct: 111 RFYERIEKEKEGMSRQCFIAGVPGSFHRRLFPDRSIHFFHSSYSLHWLSQVPEGLVSESG 170

Query: 120 ----------------DVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND---NF 160
                            VHKA+LNQFE DF+ FL+ RS+E+   G M+LTLL +D     
Sbjct: 171 TPLNKGNIHLTVTTPPSVHKAYLNQFERDFTAFLRLRSQEIIPGGHMLLTLLGSDGNGQN 230

Query: 161 HATPG-----EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQ 215
            +T G     E + M LKDM++EG  +ES++ S  + P++  S ++V+ ++++E SF + 
Sbjct: 231 SSTDGLYKICELISMTLKDMVTEGSIQESELDSL-NIPLFMPSPEQVRSVIQRESSFTLL 289

Query: 216 EVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFA 275
            +ETF + W     DG  ++  DKY R KYV  ++RAVGE  LA+ F  A +D +  RF 
Sbjct: 290 RLETFKLDWADNIDDGNKDQVFDKYGRAKYVVMYIRAVGEPILASHFGGAVMDSLFHRFF 349

Query: 276 TKVTDVVLDKGRGAYASLLISLVK 299
            KV + + + G+G Y +L+ISL +
Sbjct: 350 MKVVENI-ETGKGIYTNLVISLSR 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085033|emb|CBI28448.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/324 (43%), Positives = 200/324 (61%), Gaps = 27/324 (8%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLP 60
           C++ ADLGCSSGPN  LP WE ID +   C R +R+PP    FLNDLP++DFN +F+SL 
Sbjct: 51  CLKIADLGCSSGPNTFLPLWEIIDCIGATCSRFSREPPAFQIFLNDLPQNDFNAIFESLA 110

Query: 61  SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNES- 119
            FYER+  EK      CF+A  PGSF+ RLFP   + F +SSY+LHWLS++P+G  +ES 
Sbjct: 111 RFYERIEKEKEGMSRQCFIAGVPGSFHRRLFPDRSIHFFHSSYSLHWLSQVPEGLVSESG 170

Query: 120 ----------------DVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND---NF 160
                            VHKA+LNQFE DF+ FL+ RS+E+   G M+LTLL +D     
Sbjct: 171 TPLNKGNIHLTVTTPPSVHKAYLNQFERDFTAFLRLRSQEIIPGGHMLLTLLGSDGNGQN 230

Query: 161 HATPG-----EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQ 215
            +T G     E + M LKDM++EG  +ES++ S  + P++  S ++V+ ++++E SF + 
Sbjct: 231 SSTDGLYKICELISMTLKDMVTEGSIQESELDSL-NIPLFMPSPEQVRSVIQRESSFTLL 289

Query: 216 EVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFA 275
            +ETF + W     DG  ++  DKY R KYV  ++RAVGE  LA+ F  A +D +  RF 
Sbjct: 290 RLETFKLDWADNIDDGNKDQVFDKYGRAKYVVMYIRAVGEPILASHFGGAVMDSLFHRFF 349

Query: 276 TKVTDVVLDKGRGAYASLLISLVK 299
            KV + + + G+G Y +L+ISL +
Sbjct: 350 MKVVENI-ETGKGIYTNLVISLSR 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587606|ref|XP_002534327.1| Jasmonate O-methyltransferase, putative [Ricinus communis] gi|223525486|gb|EEF28055.1| Jasmonate O-methyltransferase, putative [Ricinus communis]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/324 (43%), Positives = 199/324 (61%), Gaps = 26/324 (8%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFK-SL 59
           C+   ++GCSSGPNALLP WE I+ +D  C+ + +KPP+L  FLNDLP +DFNT+F+ S+
Sbjct: 54  CLTMVEMGCSSGPNALLPLWEIIERIDSTCNEMKKKPPMLQVFLNDLPGTDFNTIFRSSV 113

Query: 60  PSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNES 119
           P+F E++  EKG++FG  F++A PGSFY RLFP   L  V+SS ++HW S++P+G   ES
Sbjct: 114 PNFQEKVVQEKGNKFGPIFISACPGSFYGRLFPPQSLHLVHSSCSVHWCSQVPEGLVTES 173

Query: 120 -----------------DVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY--NDNF 160
                             VHKA+L+QFE DF+T LK RSEE+   G M+LT+    NDN 
Sbjct: 174 GIAMNKGNICIAETSPPSVHKAYLDQFERDFTTLLKLRSEEIVPGGHMILTITAKNNDNP 233

Query: 161 HATPGE---PML-MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE 216
           +   G    P++ M L DM+ EGL + SK+ S+ + P+Y  S +EV  +++KE SF I  
Sbjct: 234 YCKYGSEFWPLIGMTLNDMVEEGLVQRSKLDSW-NIPLYYPSAEEVTDLIQKENSFTISR 292

Query: 217 VETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFAT 276
           VE F  SW     DG  N   DK+ RGK+V  ++RA  ES L   F +A +D++  R + 
Sbjct: 293 VEEFVQSWDDNIEDGNSNLVFDKWERGKHVANYMRAAAESMLVTQFGNAIIDDLFNRLSA 352

Query: 277 KVTDVVLDKGRGAYASLLISLVKK 300
           K     L+ G G +  L+IS+ +K
Sbjct: 353 KAA-YYLENGMGLFNHLVISMTRK 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|167613941|gb|ABZ89568.1| carboxyl methyltransferase 4 [Humulus lupulus]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/315 (43%), Positives = 196/315 (62%), Gaps = 18/315 (5%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNR--KPPVLHSFLNDLPRSDFNTVFKS 58
           C+R ADLGCSSGPN L      ID +  IC   N+  KPP    FLNDLP +DFN VF+S
Sbjct: 53  CLRIADLGCSSGPNTLTLVSYIIDIVQXICQCSNKIIKPPTFQVFLNDLPGNDFNVVFQS 112

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPK----- 113
           L +FYERL+ EKG +FG CF+AA PGSFY +LFP+N +  V+SSY+LHWLS++P+     
Sbjct: 113 LSNFYERLKKEKGDDFGPCFIAAMPGSFYGKLFPNNSMHIVHSSYSLHWLSQVPREVLVN 172

Query: 114 GQGN-------ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL--YNDNFHATP 164
            +GN          V KA+L QF  DF+ FL++RSEE++  G M++T++     + H   
Sbjct: 173 NKGNIYISKTSPPLVFKAYLEQFRKDFTNFLRWRSEEIEVGGIMIITIMGSIRSDSHKNI 232

Query: 165 GEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSW 224
            E M   LKDM+ E + E   + +F + P+Y A+  EV+ +V++EGSF +Q++ +F ++W
Sbjct: 233 CEIMGRALKDMVKENIXEAESLDNF-NMPVYFANSTEVESVVQEEGSFSVQKLNSFEMAW 291

Query: 225 LVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLD 284
             GF     N  ++K  RGKYV+ ++RA  E  L   F    ++E+ +R A KVT+  + 
Sbjct: 292 DSGFTSHEHNSNNEKCERGKYVSDYIRAAAEPILVKQFGKTVMEELFKRIADKVTE-SMA 350

Query: 285 KGRGAYASLLISLVK 299
           K +  Y +L+ISL K
Sbjct: 351 KEKWQYLNLVISLTK 365

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359745159|gb|AEV57590.1| N-methyltransferase [Coffea arabica]

 Score =  246 bits (629), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 138/328 (42%), Positives = 192/328 (58%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           CI+ ADLGC+SGPN LL   + + S+DK+      +   P +  FLNDL ++DFN+VFKS
Sbjct: 53  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKS 112

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY +L  E G + GSC + A PGSFY RLFP   + F++S Y LHWLS++P G    
Sbjct: 113 LPSFYRKLEKENGRKIGSCLIGAMPGSFYGRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161
                        + +   V KA+L+QF  DF+TFL+  SEEL S+GRM+LT +  ++  
Sbjct: 173 LGISANKGCIYSSKASRPPVQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEF 232

Query: 162 ATPGEPML--MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
             P    L  M + D++ EG  EE K+ SF + P+Y AS +EVK+IV++EGSF+I  +ET
Sbjct: 233 GNPNSMDLLEMSINDLVIEGHLEEEKLDSF-NVPVYAASAEEVKRIVEEEGSFEILYLET 291

Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           F   +  GF    D +G        D++AR  +V   VR+V E  LA  F +A + ++  
Sbjct: 292 FKAPYDAGFSIDDDYQGRSHSPVSCDEHARATHVASVVRSVYEPILAGHFGEAILPDLSH 351

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           R        VL  G+G Y SL+ISL KK
Sbjct: 352 RIEKNAAK-VLRSGKGFYDSLIISLAKK 378

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566925|ref|XP_003551675.1| PREDICTED: salicylate O-methyltransferase-like [Glycine max]

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 193/317 (60%), Gaps = 20/317 (6%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLP 60
           C++ ADLGCS+GPN LL     ID + K    LN +PP L  +LNDL  +DFN++FKSLP
Sbjct: 53  CMKVADLGCSAGPNTLLVISNIIDMVYKASTHLNHEPPTLQFYLNDLFGNDFNSIFKSLP 112

Query: 61  SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNES- 119
            F +RL  +KGH FG CF+ A+PGSFY RLFP+N ++  +SSY LHWLS+ P    +E+ 
Sbjct: 113 DFCKRLIEDKGHNFGPCFINATPGSFYGRLFPNNSINLFHSSYGLHWLSQDPLLGSSEAS 172

Query: 120 ---------------DVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATP 164
                          +V+KA+L QF+ DF  FLK RS+EL   G M+L LL  +    T 
Sbjct: 173 LLNKGHCYIVNTSPPEVYKAYLKQFQQDFKLFLKSRSKELVPGGAMLLVLLGRNEIPPTV 232

Query: 165 G--EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV 222
              EP+ ++L DM  EGL EE+K+ SF + P+Y+ +V+E++ ++++EGSF +Q +E F  
Sbjct: 233 NGWEPISLILNDMFLEGLIEEAKLDSF-NIPVYQPTVEEIRHVIQEEGSFYVQRLEIFIQ 291

Query: 223 SWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVV 282
                  DG D+   D   + + V KH+RA+ E  L+  F    ++E+  RF  K+   +
Sbjct: 292 PLGESINDGGDDSFLDGNLKAESVAKHMRAIMEPLLSTKFGAEVINELFTRFQKKIMQ-L 350

Query: 283 LDKGRGAYASLLISLVK 299
           ++  +  +A+L+IS++K
Sbjct: 351 MEVEKSEWATLMISMIK 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30023550|dbj|BAC75663.1| 3,7-dimethylxanthine N-methyltransferase [Coffea arabica]

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 137/328 (41%), Positives = 193/328 (58%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           CI+ ADLGC+SGPN LL   + + S+DK+      +   P +  FLNDL ++DFN+VFKS
Sbjct: 53  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKS 112

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY +L  E G + GSC + A PGSFY RLFP   + F++S Y LHWLS++P G    
Sbjct: 113 LPSFYRKLEKENGRKIGSCLIGAMPGSFYGRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161
                        + +   + KA+L+QF  DF+TFL+  SEEL S+GRM+LT +  ++  
Sbjct: 173 LGISANKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTWICKEDEF 232

Query: 162 ATPGEPML--MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
             P    L  M + D++ EG  EE K+ SF + PIY  S +EVK IV++EGSF+I  +ET
Sbjct: 233 ENPNSIDLLEMSINDLVIEGHLEEEKLDSF-NVPIYAPSTEEVKCIVEEEGSFEILYLET 291

Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           F V +  GF    D +G        D++AR  +V   VR++ E  +A+ F +A + ++  
Sbjct: 292 FKVPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIFEPIVASHFGEAIMPDLSH 351

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           R A      VL  G+G Y SL+ISL KK
Sbjct: 352 RIAKNAAK-VLRSGKGFYDSLIISLAKK 378

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75168238|sp|Q9AVL9.1|CS4_COFAR RecName: Full=Probable caffeine synthase 4; Short=CtCS4; AltName: Full=Methyltransferase-like 1; Short=CaMTL1 gi|13365694|dbj|BAB39213.1| caffeine synthase [Coffea arabica]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 135/328 (41%), Positives = 199/328 (60%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           CI+ ADLGC+SGPN LL  W+ + S+DK+   +  +   P +  FL DL ++DFN+VF  
Sbjct: 54  CIKVADLGCASGPNTLLTVWDTVQSIDKVKQEMKNELERPTIQVFLTDLFQNDFNSVFML 113

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY +L  E G + GSC +AA PGSF+ RLFP   + F++SSY+L +LS++P G    
Sbjct: 114 LPSFYRKLEKENGRKIGSCLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTE 173

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161
                        + +   V KA+L+QF  DF+TFL+ RSEEL S+GRM+LT +   +  
Sbjct: 174 LGITANKRSIYSSKASPPPVQKAYLDQFTKDFTTFLRMRSEELLSRGRMLLTCICKGDEC 233

Query: 162 ATPG--EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
             P   + + M + D+++EG   E K+ SF + PIY ASV+EVK +V++EGSF+I  ++T
Sbjct: 234 DGPNTMDLLEMAINDLVAEGRLGEEKLDSF-NVPIYTASVEEVKCMVEEEGSFEILYLQT 292

Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           F + +  GF    D +        SD++AR  +V   +R+V E  LA+ F +A + +I  
Sbjct: 293 FKLRYDAGFSIDDDCQVRSHSPVYSDEHARAAHVASLIRSVYEPILASHFGEAIIPDIFH 352

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           RFAT    V+   G+G Y +L+ISL KK
Sbjct: 353 RFATNAAKVI-RLGKGFYNNLIISLAKK 379

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26453381|dbj|BAC43759.1| tentative caffeine synthase 4 [Coffea arabica]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 135/328 (41%), Positives = 199/328 (60%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           CI+ ADLGC+SGPN LL  W+ + S+DK+   +  +   P +  FL DL ++DFN+VF  
Sbjct: 54  CIKVADLGCASGPNTLLTVWDTVQSIDKVRQEMKNELERPTIQVFLTDLFQNDFNSVFML 113

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY +L  E G + GSC +AA PGSF+ RLFP   + F++SSY+L +LS++P G    
Sbjct: 114 LPSFYRKLEKENGRKIGSCLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTE 173

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161
                        + +   V KA+L+QF  DF+TFL+ RSEEL S+GRM+LT +   +  
Sbjct: 174 LGITANKRSIYSSKASPPPVQKAYLDQFTKDFTTFLRMRSEELLSRGRMLLTCICKGDEC 233

Query: 162 ATPG--EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
             P   + + M + D+++EG   E K+ SF + PIY ASV+EVK +V++EGSF+I  ++T
Sbjct: 234 DGPNTMDLLEMAINDLVAEGRLGEEKLDSF-NVPIYTASVEEVKCMVEEEGSFEILYLQT 292

Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           F + +  GF    D +        SD++AR  +V   +R+V E  LA+ F +A + +I  
Sbjct: 293 FKLRYDAGFSIDDDCQVRSHSPVYSDEHARAAHVASLIRSVYEPILASHFGEAIIPDIFH 352

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           RFAT    V+   G+G Y +L+ISL KK
Sbjct: 353 RFATNAAKVI-RLGKGFYNNLIISLAKK 379

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2013149	389	JMT "jasmonic acid carboxyl me	0.396	0.305	0.504	1.3e-51
TAIR|locus:2179929	415	NAMT1 [Arabidopsis thaliana (t	0.956	0.691	0.408	7.4e-50
TAIR|locus:2154845	354	AT5G66430 [Arabidopsis thalian	0.95	0.805	0.385	1.2e-49
TAIR|locus:2080747	379	BSMT1 [Arabidopsis thaliana (t	0.953	0.754	0.386	2.5e-49
TAIR|locus:2179969	385	AT5G04380 "AT5G04380" [Arabido	0.963	0.750	0.381	6e-48
TAIR|locus:2053458	359	AT2G14060 [Arabidopsis thalian	0.983	0.821	0.352	8.1e-44
TAIR|locus:2095572	368	AT3G21950 [Arabidopsis thalian	0.813	0.663	0.391	1.1e-41
TAIR|locus:2144466	368	AT5G38020 [Arabidopsis thalian	0.716	0.584	0.389	4.8e-39
TAIR|locus:2115400	371	AT4G36470 [Arabidopsis thalian	0.896	0.725	0.325	1.9e-26
TAIR|locus:2200186	363	AT1G68040 [Arabidopsis thalian	0.836	0.691	0.309	1.2e-24

TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
 Identities = 63/125 (50%), Positives = 80/125 (64%)

Query:     2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPS 61
             I  ADLGCSSGPN+LL     +D++  +C  L+R  P L   LNDLP +DFN +  SLP 
Sbjct:    53 IGIADLGCSSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPE 112

Query:    62 FYERLRTEK-GHEFG-----SCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQ 115
             FY+R+   K G  FG     SCFV+A PGSFY RLFP   L FV+SS +LHWLS++P  +
Sbjct:   113 FYDRVNNNKEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCRE 172

Query:   116 GNESD 120
               + D
Sbjct:   173 AEKED 177

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009694 "jasmonic acid metabolic process" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0030795 "jasmonate O-methyltransferase activity" evidence=IMP;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2179929 NAMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 130/318 (40%), Positives = 185/318 (58%)

Query:     2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPS 61
             I+ ADLGCSSG N  L   E I++++  C + N+ PP +   LNDLP +DFNT FK +  
Sbjct:   104 IKVADLGCSSGQNTFLAMSEIINTINVFCQQRNQNPPEIDCCLNDLPSNDFNTTFKFIQF 163

Query:    62 FYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-QGNESD 120
             F     T K     S FV   PGSFY+RLFP   L FV+SSY LHWLS++P+G + N+  
Sbjct:   164 FNGMNITSKE----SYFVYGVPGSFYSRLFPRRSLHFVHSSYGLHWLSKVPEGLEKNKMS 219

Query:   121 VH----------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN---DN-FHATPGE 166
             V+          KA+LNQF+ DF+TFLK RSEE+ S GRMVLT +     DN  H     
Sbjct:   220 VYITNSSPLSTYKAYLNQFQRDFATFLKLRSEEMVSNGRMVLTFIGRNTIDNPLHRDCCH 279

Query:   167 PMLMV---LKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS 223
                ++   L+D+++EGL   SKV SF   P Y  +  E+K++V+KEGSF+I+++ET    
Sbjct:   280 FWTLLSKSLRDLVAEGLVSASKVDSFY-LPFYDPNEKEIKEMVQKEGSFEIRDLETH--- 335

Query:   224 WLVGFVDGVDNKGSDKYAR-GKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVV 282
                G+  G  N+   K ++ G+    ++RAV E  LA  F DA ++ +  +FA  V+  V
Sbjct:   336 ---GYDLGHCNQDESKRSKSGQNEANYIRAVSEPLLAAHFGDAIINILFNKFACHVSQHV 392

Query:   283 LDKGRGAYASLLISLVKK 300
               + +    S+++SL KK
Sbjct:   393 SCRNKTT-VSIVVSLTKK 409

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

TAIR|locus:2154845 AT5G66430 [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 125/324 (38%), Positives = 190/324 (58%)

Query:     2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPS 61
             I+ ADLGC++G N  L   E +++++ +C + N+KPP +   LNDLP +DFNT FK +P 
Sbjct:    45 IKVADLGCATGENTFLTMAEIVNTINVLCQQCNQKPPEIDCCLNDLPDNDFNTTFKFVPF 104

Query:    62 FYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-QGNESD 120
             F +R+++++      CFV+  PGSFY+RLFP   L FV+SSY+LHWLS++PKG + N S 
Sbjct:   105 FNKRVKSKR-----LCFVSGVPGSFYSRLFPRKSLHFVHSSYSLHWLSKVPKGLEKNSSS 159

Query:   121 VH----------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL----YNDNFHATPGE 166
             V+          KA+LNQF+SDF +FL+ RSEE+ S GRMVLT +     +D  H     
Sbjct:   160 VYITTSSPPNAYKAYLNQFQSDFKSFLEMRSEEMVSNGRMVLTFIGRKTLDDPLHRDCCH 219

Query:   167 PMLMV---LKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS 223
                ++   L+D++ EGL   SKV SF + P Y  S +EV ++++ EGSF+I ++E     
Sbjct:   220 FWTLLSTSLRDLVYEGLVSASKVDSF-NIPFYDPSKEEVMEMIRNEGSFEINDLE----- 273

Query:   224 WLVGFVDGVDNKGSDKYARGKYVTKH-------VRAVGESFLANLFDDATVDEIHRRFAT 276
              + GF  G+ N   D Y     ++K        +RAV ES L   F    +D + ++FA 
Sbjct:   274 -IHGFELGLSNHDED-YMLHSQISKAGQREANCIRAVSESMLVADFGVDIMDTLFKKFAY 331

Query:   277 KVTDVVLDKGRGAYASLLISLVKK 300
              V+       +    +L++SL++K
Sbjct:   332 HVSQHASCTNKTT-VTLVVSLIRK 354

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2080747 BSMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 123/318 (38%), Positives = 184/318 (57%)

Query:     2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPS 61
             I+ A+LGCSSG N+ L  +E I++++ +C  +N+  P +   LNDLP +DFNT FK +P 
Sbjct:    75 IKVAELGCSSGQNSFLAIFEIINTINVLCQHVNKNSPEIDCCLNDLPENDFNTTFKFVPF 134

Query:    62 FYERLR-TEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPK----GQG 116
             F + L  T K     SCFV  +PGSFY+RLF  N L  ++SSYALHWLS++P+     +G
Sbjct:   135 FNKELMITNKS----SCFVYGAPGSFYSRLFSRNSLHLIHSSYALHWLSKVPEKLENNKG 190

Query:   117 N-------ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL----YNDNFHATPG 165
             N           +KA+LNQF+ DF+ FL+ RSEE+ S GRMVLT +     ND  +    
Sbjct:   191 NLYITSSSPQSAYKAYLNQFQKDFTMFLRLRSEEIVSNGRMVLTFIGRNTLNDPLYRDCC 250

Query:   166 EPMLMV---LKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV 222
                 ++   L+D++ EGL  ESK+ +F + P Y  +V E+K++++KEGSF+I E+E+   
Sbjct:   251 HFWTLLSNSLRDLVFEGLVSESKLDAF-NMPFYDPNVQELKEVIQKEGSFEINELESH-- 307

Query:   223 SWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVV 282
                 GF  G   +  D +  G+     +RAV E  L   F +  +D +  ++A  VT   
Sbjct:   308 ----GFDLGHYYE-EDDFEAGRNEANGIRAVSEPMLIAHFGEEIIDTLFDKYAYHVTQHA 362

Query:   283 LDKGRGAYASLLISLVKK 300
               + +    SL++SL KK
Sbjct:   363 NCRNKTT-VSLVVSLTKK 379

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006952 "defense response" evidence=IEP

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0051707 "response to other organism" evidence=IEP

GO:0052624 "2-phytyl-1,4-naphthoquinone methyltransferase activity" evidence=IDA

GO:0080150 "S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity" evidence=IDA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2179969 AT5G04380 "AT5G04380" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 122/320 (38%), Positives = 182/320 (56%)

Query:     1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLP 60
             CI+ ADLGCSSG N  L   E +++++ +C + N+  P +   LNDLP +DFNT FK + 
Sbjct:    77 CIKVADLGCSSGQNTFLAMSEIVNTINVLCQKWNQSRPEIDCCLNDLPTNDFNTTFKFIT 136

Query:    61 SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-QGNES 119
              F ++L +      GSCFV+  PGSFY+RLFP   L F+YS Y++H+LS++P G + N+ 
Sbjct:   137 FFNKKLTSN-----GSCFVSGVPGSFYSRLFPRKSLHFIYSIYSIHFLSKVPDGLEKNKM 191

Query:   120 DVH----------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTL---------LYNDNF 160
              V+          KA+LNQF+ DF+TFL+ RSEE+   GRMVLTL         LY D  
Sbjct:   192 SVYITSSSPLSEYKAYLNQFKRDFTTFLRMRSEEMVHNGRMVLTLIGRNTLDNPLYRDCC 251

Query:   161 HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF 220
             H      +   L+D++ EGL   SKV SF+  P Y  + +EVK+I++ EGSF I ++E  
Sbjct:   252 HCWT--LLSNSLRDLVFEGLLSASKVYSFK-MPFYDPNEEEVKEIIRNEGSFQINDLEMH 308

Query:   221 NVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTD 280
                  +G      +  S K   G+     +RAV E+ L   F D  +D +  ++A  V+ 
Sbjct:   309 EFD--LGHSKEKCSLQSHKAKAGQKEASCIRAVTETMLVAHFGDDIIDALFHKYAHHVSQ 366

Query:   281 VVLDKGRGAYASLLISLVKK 300
                 + + +  +L++SLV+K
Sbjct:   367 HASCRVKTS-VTLIVSLVRK 385

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2053458 AT2G14060 [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 113/321 (35%), Positives = 176/321 (54%)

Query:     1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLP 60
             CI+ ADLGCS+G N +L       ++ +   ++++ PP +  +LNDLP +DFNT FK   
Sbjct:    44 CIKVADLGCSTGQNTVLAMSAIAYTIMESYQQMSKNPPEIDCYLNDLPENDFNTTFKLFH 103

Query:    61 SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-QGNES 119
             SF E+L+ E     G  FV+  PGSFY+RLFP   L FV+S++++HWLSR+P G + N  
Sbjct:   104 SFQEKLKPEVK---GKWFVSGVPGSFYSRLFPRKSLHFVHSAFSIHWLSRIPDGLESNTK 160

Query:   120 DVH----------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL---YNDNFHATPGE 166
              +H          K++LNQF+ DFS FLK RSEE+   G MVLT +    +D       +
Sbjct:   161 SIHIKYPYPSNVYKSYLNQFKIDFSLFLKMRSEEVVHNGHMVLTFVGRKVSDTLSKDCFQ 220

Query:   167 PMLMV---LKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN-- 221
                ++   L D+ SEG   +S VKSF + P Y  + +EV++ + KEGSF+I ++E F+  
Sbjct:   221 VWSLLSDCLLDLASEGFVNDSMVKSF-NMPFYNPNEEEVREFILKEGSFEITKIEKFDHV 279

Query:   222 VSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDV 281
             V + +   +  D + S +   G       R + E  L   F DA ++ +  ++A  +   
Sbjct:   280 VPYKIDREEE-DEEQSLQLEAGIKHASWARCITEPLLVAHFGDAIIEPVFNKYAHYMAKY 338

Query:   282 --VLDKGRGAYASLLISLVKK 300
               V +  R     +++SL +K
Sbjct:   339 LSVSNHRRNMTLVIVVSLTRK 359

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 105/268 (39%), Positives = 156/268 (58%)

Query:     1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLP 60
             CI+ ADLGCSSG N  L   E ++++     +  +  P +   LNDLP +DFNT FK +P
Sbjct:    49 CIKVADLGCSSGENTFLVMSEIVNTIITTYQQNGQNLPEIDCCLNDLPENDFNTTFKLIP 108

Query:    61 SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-QGNES 119
             SF+E+L   K +  G+C+V+  PGSFYTRLFP   L FV+SS+ LHWLS++P G + N+ 
Sbjct:   109 SFHEKL---KMNVKGNCYVSGCPGSFYTRLFPSKSLHFVHSSFCLHWLSKVPDGLEENKK 165

Query:   120 DVH----------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGE--- 166
             +V+          +++ NQF+ DFS FL+ R+EE    GRM LTL+          E   
Sbjct:   166 NVYLRSPCPPNLYESYWNQFKKDFSMFLRMRAEETMPSGRMALTLVGRKTLDPLSKECFK 225

Query:   167 PMLMV---LKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET-FNV 222
                +V   L D++SEG+ +ES ++SF + P Y     EVK++++ EGSF+I+  ET F +
Sbjct:   226 DWSLVSDSLLDLVSEGVVKESDLESF-NLPYYSPDESEVKEVIENEGSFEIKNFETIFGL 284

Query:   223 --SWLVGFVDGVDNKGSDKYARGKYVTK 248
               S+  G  +  D+     ++R   V K
Sbjct:   285 LFSYKTGHSEVKDDDDDVDHSRRFEVVK 312

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 92/236 (38%), Positives = 139/236 (58%)

Query:     1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLP 60
             CI+ ADLGCSSG N LL   E ++++     +  +  P ++  LNDLP +DFNT FK +P
Sbjct:    49 CIKVADLGCSSGENTLLVMSEIVNTIITSYQQKGKNLPEINCCLNDLPDNDFNTTFKLVP 108

Query:    61 SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-QGNES 119
             +F++ L+ +     G CF++  PGSFY+RLFP   L FV+SS  LHWLS++P G + N+ 
Sbjct:   109 AFHKLLKMDVK---GKCFISGVPGSFYSRLFPSKSLHFVHSSLCLHWLSKVPDGLEDNKK 165

Query:   120 DVH----------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGE--- 166
             +V+          K++L QF++DFS FL+ R++E    GRM LT +   +      +   
Sbjct:   166 NVYLRSPCPPNVYKSYLTQFKNDFSLFLRLRADETVPNGRMALTFVGRKSLDPLSKDCFQ 225

Query:   167 ---PMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
                 +   L D++SEG+ +ES V SF + P Y     EV+++++ EGSF I   ET
Sbjct:   226 NWSSISDSLLDLVSEGIVKESDVDSF-NLPFYNPDESEVREVIESEGSFKISNFET 280

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 98/301 (32%), Positives = 144/301 (47%)

Query:     5 ADLGCSSGPNALLPTWEAIDSLDKICHR-LNRKP-PVLHSFLNDLPRSDFNTVFKSLPSF 62
             ADLGCSSGPN L    + I ++    HR +  +P P    FLNDLP +DFN +FKSLP F
Sbjct:    58 ADLGCSSGPNTLSTITDFIKTVQVAHHREIPIQPLPEFSIFLNDLPGNDFNFIFKSLPDF 117

Query:    63 YERLRTEKGH-EFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNES-- 119
             +  L+ +  + +  S F+AA PGSFY RLFP N + FVY+S++LHWLS++P    +E   
Sbjct:   118 HIELKRDNNNGDCPSVFIAAYPGSFYGRLFPENTIHFVYASHSLHWLSKVPTALYDEQGK 177

Query:   120 DVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEG 179
              ++K  ++          K    + K    + L     +   A  G  +L++L     EG
Sbjct:   178 SINKGCVSICSLSSEAVSKAYCSQFKEDFSIFLRCRSKEMVSA--GRMVLIILG---REG 232

Query:   180 LAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDG-VDNKGS- 237
                  +  SF    + R+  D V Q   +E   D  ++  +  S     ++G VD +GS 
Sbjct:   233 PDHVDRGNSFFWELLSRSIADLVAQGETEEEKLDSYDMHFYAPS--ADEIEGEVDKEGSF 290

Query:   238 ------------DK------YARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVT 279
                         DK       + GK V K VRAV ES L   F +  +D++   +   V 
Sbjct:   291 ELERLEMLEVKKDKGNTEGDISYGKAVAKTVRAVQESMLVQHFGEKILDKLFDTYCRMVD 350

Query:   280 D 280
             D
Sbjct:   351 D 351

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IMP

TAIR|locus:2200186 AT1G68040 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 89/288 (30%), Positives = 134/288 (46%)

Query:     3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSF 62
             R ADLGC++GPN        I S++    + N   P    F NDLP++DFNT+F SLP  
Sbjct:    62 RIADLGCATGPNTFFLVDNIIKSIETSLRKSNSSKPEFLVFFNDLPQNDFNTLFTSLPQ- 120

Query:    63 YERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-------Q 115
              +R          S      PGSFY R+ P + +  V +  A HWLS +PK         
Sbjct:   121 -DR----------SYLAVGVPGSFYGRVLPQSSVHIVVTMGATHWLSSVPKEVLDKSSKA 169

Query:   116 GNESDVH---------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL-------YNDN 159
              N+  VH         KA+ +QF  D   FL+ R+ E+ S G +V+ +        +++ 
Sbjct:   170 WNKGKVHYSNAADEVVKAYRDQFGRDMEKFLEARATEIVSGGLLVVGMCGIPKGMPFSNL 229

Query:   160 FHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
               +     M  VL  M SEGL  E +V +F + PIY A+ +EV  +V K G F ++ +E 
Sbjct:   230 ADSIMYTSMADVLTQMHSEGLISEEQVDTF-NIPIYSATPEEVTVLVVKNGCFTVESMEL 288

Query:   220 FN-VSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDAT 266
              +  +WL    +  D +      +    +  +   GE  L ++FD  T
Sbjct:   289 MDPTAWLKRPTNVEDVRHWMVCIKATMGSLFINHFGEHLLDDVFDRLT 336

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	3e-94
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	6e-36

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score =  281 bits (722), Expect = 3e-94
 Identities = 128/328 (39%), Positives = 181/328 (55%), Gaps = 41/328 (12%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK-PPVLHSFLNDLPRSDFNTVFKSL 59
            I+ ADLGCSSGPN  L     ID+++K   + N   PP    F NDLP +DFNT+FK L
Sbjct: 17  SIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVFFNDLPSNDFNTLFKLL 76

Query: 60  PSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNES 119
           P F ++ R        S FV+  PGSFY RLFP N L FV+SSY+LHWLS++PKG  ++ 
Sbjct: 77  PPFQKKKR--------SYFVSGVPGSFYGRLFPRNSLHFVHSSYSLHWLSQVPKGLEDKE 128

Query: 120 D-----------------VHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL------- 155
                             V+KA+L+QF+ DFS FL+ R+EEL S G MVLT L       
Sbjct: 129 SPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGLMVLTFLGRPSVDP 188

Query: 156 -YNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDI 214
              +       + +   L D++SEGL EE K+ SF + PIY  S +EVK+I++KEGSF I
Sbjct: 189 SETECGIFW--DLLGDALNDLVSEGLIEEEKLDSF-NIPIYAPSPEEVKEIIEKEGSFTI 245

Query: 215 QEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRF 274
           + +E        G V   ++   DK   G++V   VRAV E  L   F +  +D++  R+
Sbjct: 246 ERLEII--KHPNGEVPWDESDSEDKVEDGRFVASSVRAVVEPMLVAHFGEDIMDKLFDRY 303

Query: 275 ATKVTDV--VLDKGRGAYASLLISLVKK 300
           A K+++      +      ++++SL +K
Sbjct: 304 AKKLSEHLSKELQNAKKTINVVVSLSRK 331

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score =  132 bits (334), Expect = 6e-36
 Identities = 80/246 (32%), Positives = 120/246 (48%), Gaps = 33/246 (13%)

Query: 5   ADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSF-- 62
            DLGCSSG N +      +  + K        PP   +F +DLP +DFNT+F+ LP    
Sbjct: 68  VDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLAN 127

Query: 63  ----YERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNE 118
                E      GH   S F A  PGSFY RLFP   +D  +S+++LHWLS++P+   ++
Sbjct: 128 YGGSMEECLAASGHR--SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDK 185

Query: 119 SD---------VHK-------AFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA 162
                      +H        A+  QF++D + FL+ R++E+K  G M L  L   +   
Sbjct: 186 RSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDP 245

Query: 163 TP--GEPMLM------VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDI 214
           T   G  +L          D++ EGL    K  SF + P+Y  S+ + K++V+  GSF I
Sbjct: 246 TDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSF-NIPVYAPSLQDFKEVVEANGSFAI 304

Query: 215 QEVETF 220
            ++E F
Sbjct: 305 DKLEVF 310

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.3
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.26
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.82
PLN02336	475	phosphoethanolamine N-methyltransferase	98.75
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.73
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.72
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.72
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.71
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.71
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.67
PRK08317	241	hypothetical protein; Provisional	98.66
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.66
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.61
PLN02244	340	tocopherol O-methyltransferase	98.6
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.52
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.46
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.43
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.42
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.41
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.38
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.31
PLN02490	340	MPBQ/MSBQ methyltransferase	98.29
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.26
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.22
PRK11207	197	tellurite resistance protein TehB; Provisional	98.21
PRK06202	232	hypothetical protein; Provisional	98.21
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.21
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.2
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.2
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.16
PRK12335	287	tellurite resistance protein TehB; Provisional	98.16
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.14
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.14
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.95
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.9
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.87
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.79
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.77
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.75
PRK06922	677	hypothetical protein; Provisional	97.74
PLN02336	475	phosphoethanolamine N-methyltransferase	97.7
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.69
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.67
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.66
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.63
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.6
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.57
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.55
KOG3010	261	consensus Methyltransferase [General function pred	97.53
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.5
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.47
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.28
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.28
KOG2940	325	consensus Predicted methyltransferase [General fun	97.17
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.12
TIGR03438	301	probable methyltransferase. This model represents	97.06
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.05
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.04
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.02
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	96.97
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.96
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.91
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.9
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.87
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.83
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.79
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.75
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.7
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.67
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.67
PTZ00146	293	fibrillarin; Provisional	96.65
PRK05785	226	hypothetical protein; Provisional	96.62
PRK04266	226	fibrillarin; Provisional	96.61
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.6
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.58
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	96.56
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	96.55
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.54
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	96.5
KOG2361	264	consensus Predicted methyltransferase [General fun	96.48
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.34
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.33
PRK14967	223	putative methyltransferase; Provisional	96.25
TIGR00438	188	rrmJ cell division protein FtsJ.	95.92
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	95.9
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.89
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.8
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.78
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	95.74
PRK14968	188	putative methyltransferase; Provisional	95.73
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	95.7
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.54
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	95.44
PLN03075	296	nicotianamine synthase; Provisional	95.4
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	95.27
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.2
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	94.89
PRK14902	444	16S rRNA methyltransferase B; Provisional	94.88
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	94.84
COG4123	248	Predicted O-methyltransferase [General function pr	94.78
PHA03411	279	putative methyltransferase; Provisional	94.71
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	94.56
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	94.3
PRK14903	431	16S rRNA methyltransferase B; Provisional	94.3
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.27
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.27
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	94.24
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	93.9
PRK00811	283	spermidine synthase; Provisional	93.75
PRK07402	196	precorrin-6B methylase; Provisional	93.74
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	93.7
KOG4300	252	consensus Predicted methyltransferase [General fun	93.66
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	93.58
PRK14904	445	16S rRNA methyltransferase B; Provisional	93.33
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	92.71
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	92.27
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	92.25
PRK14901	434	16S rRNA methyltransferase B; Provisional	91.86
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	90.98
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	90.66
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	90.63
PRK03612	521	spermidine synthase; Provisional	89.93
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	89.65
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	89.48
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	88.95
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	88.4
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	88.38
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	87.92
PRK04457	262	spermidine synthase; Provisional	87.71
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	86.81
KOG1331	293	consensus Predicted methyltransferase [General fun	86.31
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	84.35
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	84.02
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	83.59
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	80.28
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	80.2
PLN02366	308	spermidine synthase	80.17
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	80.05

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=1.5e-92  Score=673.97  Aligned_cols=291  Identities=44%  Similarity=0.763  Sum_probs=243.2

Q ss_pred             CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcC-CCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceee
Q 045960            1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLN-RKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFV   79 (300)
Q Consensus         1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~-~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~   79 (300)
                      +|+|||||||+|+||+.+|+.||++|+++|++.+ +++|+|||||||||+||||+||++||.+.+++.+     .++||+
T Consensus        17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-----~~~~f~   91 (334)
T PF03492_consen   17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-----FRNYFV   91 (334)
T ss_dssp             EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-----TTSEEE
T ss_pred             ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-----CceEEE
Confidence            5899999999999999999999999999998766 6889999999999999999999999999888766     378999


Q ss_pred             eecCCccccccCCCCcccEEEeccccccccCCCCCCCC-----------------CHHHHHHHHHhHHHHHHHHHHHHHH
Q 045960           80 AASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGN-----------------ESDVHKAFLNQFESDFSTFLKFRSE  142 (300)
Q Consensus        80 ~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n-----------------~~~v~~ay~~q~~~D~~~fL~~Ra~  142 (300)
                      +|||||||+||||++|+||+||++||||||++|+++.+                 |++|.+||++||++||.+||++||+
T Consensus        92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~  171 (334)
T PF03492_consen   92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE  171 (334)
T ss_dssp             EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999988762                 6899999999999999999999999


Q ss_pred             hhccCceeEEEEeecCCCCCCCc------hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960          143 ELKSQGRMVLTLLYNDNFHATPG------EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE  216 (300)
Q Consensus       143 EL~~GG~~vl~~~g~~~~~~~~~------~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~  216 (300)
                      ||+|||+|||+++||++.++...      ++|+++|+|||.||+|++||+|+| |+|+|+||++|++++|+++|+|+|++
T Consensus       172 ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsf-niP~Y~ps~eEv~~~I~~~gsF~I~~  250 (334)
T PF03492_consen  172 ELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSF-NIPIYFPSPEEVRAIIEEEGSFEIEK  250 (334)
T ss_dssp             HEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG---SBB---HHHHHHHHHHHTSEEEEE
T ss_pred             eeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhce-eCCccCCCHHHHHHHHhcCCCEEEEE
Confidence            99999999999999998654432      999999999999999999999999 99999999999999999999999999


Q ss_pred             EEEEeecccCCccCCCCCCCCcccchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCC---CCeEEE
Q 045960          217 VETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGR---GAYASL  293 (300)
Q Consensus       217 ~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~---~~~~~~  293 (300)
                      +|+++.+|.. ++.. .....|..++|+.+++++||++||+|++|||++++|+||+||+++++++ ++.++   ++++++
T Consensus       251 le~~~~~~~~-~~~~-~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~-~~~~~~~~~~~~~i  327 (334)
T PF03492_consen  251 LELFEQPWWS-VPDD-ESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEH-LEKEKSRNMKFVNI  327 (334)
T ss_dssp             EEEEEEETCC-TCTT-T-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHTHTT-BEEEEE
T ss_pred             EEEEeecccc-cchh-hhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHhhccCCCcEEE
Confidence            9999977544 1211 1111357889999999999999999999999999999999999999999 76655   889999


Q ss_pred             EEEEeeC
Q 045960          294 LISLVKK  300 (300)
Q Consensus       294 ~~~l~r~  300 (300)
                      +++|+||
T Consensus       328 ~~~L~Rk  334 (334)
T PF03492_consen  328 VVSLTRK  334 (334)
T ss_dssp             EEEEEE-
T ss_pred             EEEEeeC
Confidence            9999998

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=5.1e-88  Score=648.83  Aligned_cols=292  Identities=29%  Similarity=0.507  Sum_probs=261.5

Q ss_pred             CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHH--hhhc--CCCCCc
Q 045960            1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERL--RTEK--GHEFGS   76 (300)
Q Consensus         1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~--~~~~--~~~~~~   76 (300)
                      +++|||||||+|+||+.+|++||++|+++|.+.++++|+|||||||||+||||+||++||.+++.+  ..++  ..+.++
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            479999999999999999999999999999877777899999999999999999999999876532  1110  011246


Q ss_pred             eeeeecCCccccccCCCCcccEEEeccccccccCCCCCCC-------C---------CHHHHHHHHHhHHHHHHHHHHHH
Q 045960           77 CFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQG-------N---------ESDVHKAFLNQFESDFSTFLKFR  140 (300)
Q Consensus        77 ~f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~-------n---------~~~v~~ay~~q~~~D~~~fL~~R  140 (300)
                      ||++|||||||+||||++|+||+||++|||||||+|+++.       |         +++|.+||++||++||..||++|
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876       2         58999999999999999999999


Q ss_pred             HHhhccCceeEEEEeecCCCCCCCc-------hH-HHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCe
Q 045960          141 SEELKSQGRMVLTLLYNDNFHATPG-------EP-MLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSF  212 (300)
Q Consensus       141 a~EL~~GG~~vl~~~g~~~~~~~~~-------~~-l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF  212 (300)
                      |+||+|||+||++++||++.++..+       +. +.++|++||.||+|++||+|+| |+|+|+||++|++++|+++|+|
T Consensus       224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsF-niP~Y~ps~eEv~~~Ie~~gsF  302 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSF-NIPVYAPSLQDFKEVVEANGSF  302 (386)
T ss_pred             HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcc-cCcccCCCHHHHHHHHhhcCCE
Confidence            9999999999999999987665533       33 8999999999999999999999 9999999999999999999999


Q ss_pred             eEEEEEEEeecccCCccCCCCCCCCcccchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhc--CCCCe
Q 045960          213 DIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDK--GRGAY  290 (300)
Q Consensus       213 ~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~--~~~~~  290 (300)
                      +|+++|+++..|+. +.+..    .|....+..+|+++||++||+|++|||++++|+||+||+++++++ ++.  ++.++
T Consensus       303 ~I~~le~~~~~~~~-~~~~~----~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~-~~~~~~~~~~  376 (386)
T PLN02668        303 AIDKLEVFKGGSPL-VVNEP----DDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSH-AKELLEKLQF  376 (386)
T ss_pred             EeeeeEEeeccCcc-cccCc----ccHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH-HHhhcccCce
Confidence            99999999998887 23221    255677889999999999999999999999999999999999999 887  88899


Q ss_pred             EEEEEEEee
Q 045960          291 ASLLISLVK  299 (300)
Q Consensus       291 ~~~~~~l~r  299 (300)
                      +++++||+-
T Consensus       377 ~~~~~sL~~  385 (386)
T PLN02668        377 FHIVASLSF  385 (386)
T ss_pred             EEEEEEEec
Confidence            999999874

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.30  E-value=1.6e-10  Score=105.86  Aligned_cols=198  Identities=15%  Similarity=0.154  Sum_probs=122.6

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..+..+        .+.       .|..+|+.-|+- -+.-...           ++.    +--|   +
T Consensus        32 ~vLDlGcG~G~~~~~l--------~~~-------~p~~~v~gvD~s-~~~~~~a-----------~~~----~~~~---~   77 (255)
T PRK14103         32 RVVDLGCGPGNLTRYL--------ARR-------WPGAVIEALDSS-PEMVAAA-----------RER----GVDA---R   77 (255)
T ss_pred             EEEEEcCCCCHHHHHH--------HHH-------CCCCEEEEEECC-HHHHHHH-----------Hhc----CCcE---E
Confidence            7999999999765432        221       133567777752 1111111           110    1112   2


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+.. ..+.|.+++|+++|+.+|||+..                      ...+|+.-++-|+|||++++++.+... .+
T Consensus        78 ~~d~-~~~~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~  133 (255)
T PRK14103         78 TGDV-RDWKPKPDTDVVVSNAALQWVPE----------------------HADLLVRWVDELAPGSWIAVQVPGNFD-AP  133 (255)
T ss_pred             EcCh-hhCCCCCCceEEEEehhhhhCCC----------------------HHHHHHHHHHhCCCCcEEEEEcCCCcC-Ch
Confidence            2443 35667889999999999999543                      455667778899999999998765322 11


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhc-cccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccc
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVK-SFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYA  241 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d-~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~  241 (300)
                           ....+..+..++.+...--+ .+ ..+.++.+++++..++++.| |++...+.....  .             ..
T Consensus       134 -----~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~--~-------------~~  191 (255)
T PRK14103        134 -----SHAAVRALARREPWAKLLRDIPF-RVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH--Q-------------LT  191 (255)
T ss_pred             -----hHHHHHHHhccCchhHHhccccc-ccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee--e-------------CC
Confidence                 12333444433333211101 13 33556789999999999999 887665543211  1             01


Q ss_pred             hHHHHHHHHHHh-hhhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960          242 RGKYVTKHVRAV-GESFLANLFDDATVDEIHRRFATKVTDV  281 (300)
Q Consensus       242 ~~~~~a~~iRA~-~ep~l~~hfge~i~delf~r~~~~~~~~  281 (300)
                      ....+..|+++. +.++++ .++++.++++-+.+.+.+++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~  231 (255)
T PRK14103        192 GEDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLLREA  231 (255)
T ss_pred             Cchhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHHHHH
Confidence            134677788854 466766 499888999999999988876

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.26  E-value=6e-10  Score=101.88  Aligned_cols=218  Identities=14%  Similarity=0.212  Sum_probs=129.7

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCce-eee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSC-FVA   80 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~-f~~   80 (300)
                      -+|+|+||++|..+..+...               .|.-+|+..|+-.. .-...+          + .   .+++ |. 
T Consensus        33 ~~vLDiGcG~G~~~~~la~~---------------~~~~~v~gvD~s~~-~i~~a~----------~-~---~~~~~~~-   81 (258)
T PRK01683         33 RYVVDLGCGPGNSTELLVER---------------WPAARITGIDSSPA-MLAEAR----------S-R---LPDCQFV-   81 (258)
T ss_pred             CEEEEEcccCCHHHHHHHHH---------------CCCCEEEEEECCHH-HHHHHH----------H-h---CCCCeEE-
Confidence            37999999999887644321               12357777774321 111111          0 0   0111 22 


Q ss_pred             ecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960           81 ASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF  160 (300)
Q Consensus        81 ~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~  160 (300)
                        .+++- .+.|++++|+++|+.++||+.+                      ...+|+.-.+-|+|||++++++.+... 
T Consensus        82 --~~d~~-~~~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~~~~~~LkpgG~~~~~~~~~~~-  135 (258)
T PRK01683         82 --EADIA-SWQPPQALDLIFANASLQWLPD----------------------HLELFPRLVSLLAPGGVLAVQMPDNLD-  135 (258)
T ss_pred             --ECchh-ccCCCCCccEEEEccChhhCCC----------------------HHHHHHHHHHhcCCCcEEEEECCCCCC-
Confidence              23332 3457789999999999999644                      356777788899999999998643221 


Q ss_pred             CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCccc
Q 045960          161 HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKY  240 (300)
Q Consensus       161 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~  240 (300)
                           ......+.++.....+.+.-...- ..+.+.++++++...+.+.| +.++..+..   +..            ..
T Consensus       136 -----~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~---~~~------------~~  193 (258)
T PRK01683        136 -----EPSHVLMREVAENGPWEQNLPDRG-ARRAPLPPPHAYYDALAPAA-CRVDIWHTT---YYH------------PM  193 (258)
T ss_pred             -----CHHHHHHHHHHccCchHHHhcccc-ccCcCCCCHHHHHHHHHhCC-Cceeeeeee---eee------------ec
Confidence                 112234445544433332211222 34557789999999999998 555443332   111            11


Q ss_pred             chHHHHHHHHHHh-hhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCC----CCeEEEEEEEee
Q 045960          241 ARGKYVTKHVRAV-GESFLANLFDDATVDEIHRRFATKVTDVVLDKGR----GAYASLLISLVK  299 (300)
Q Consensus       241 ~~~~~~a~~iRA~-~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~----~~~~~~~~~l~r  299 (300)
                      ...+.+..|++++ +.+++ .+++++..+++-+.|.+.+.+..+....    ..|.-++++-+|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  256 (258)
T PRK01683        194 PSAQAIVEWVKGTGLRPFL-DPLTESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARR  256 (258)
T ss_pred             CCchhhhhhhhhccHHHHH-hhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEe
Confidence            1245677788865 46666 5699999999999999988876222222    334445555554

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.82  E-value=4.3e-08  Score=93.50  Aligned_cols=151  Identities=19%  Similarity=0.180  Sum_probs=92.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+..            .+   +. +|+--| |+..+..-++.....       .+.. .++-  -+
T Consensus       125 ~VLDIGCG~G~~~~~la~------------~g---~~-~V~GiD-~S~~~l~q~~a~~~~-------~~~~-~~i~--~~  177 (322)
T PRK15068        125 TVLDVGCGNGYHMWRMLG------------AG---AK-LVVGID-PSQLFLCQFEAVRKL-------LGND-QRAH--LL  177 (322)
T ss_pred             EEEEeccCCcHHHHHHHH------------cC---CC-EEEEEc-CCHHHHHHHHHHHHh-------cCCC-CCeE--EE
Confidence            799999999988874321            12   21 477777 444443322222111       0100 1222  23


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      ++++-.--+ ++++|+|+|..+|||+..                      ...+|+.-++-|+|||++++..........
T Consensus       178 ~~d~e~lp~-~~~FD~V~s~~vl~H~~d----------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~  234 (322)
T PRK15068        178 PLGIEQLPA-LKAFDTVFSMGVLYHRRS----------------------PLDHLKQLKDQLVPGGELVLETLVIDGDEN  234 (322)
T ss_pred             eCCHHHCCC-cCCcCEEEECChhhccCC----------------------HHHHHHHHHHhcCCCcEEEEEEEEecCCCc
Confidence            344432212 678999999999998544                      456788888999999999998655443221


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ..               ++..+.+..+ .-.++.||.+++..+++++| |++.+++..
T Consensus       235 ~~---------------l~p~~~y~~~-~~~~~lps~~~l~~~L~~aG-F~~i~~~~~  275 (322)
T PRK15068        235 TV---------------LVPGDRYAKM-RNVYFIPSVPALKNWLERAG-FKDVRIVDV  275 (322)
T ss_pred             cc---------------cCchhHHhcC-ccceeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence            10               1222223344 44456789999999999999 998777644

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.75  E-value=9.8e-07  Score=87.87  Aligned_cols=189  Identities=18%  Similarity=0.241  Sum_probs=114.1

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+.        +.   .     ..+|+--|+.. +.-...+      ...   .+.. .+  +.-+
T Consensus       269 ~vLDiGcG~G~~~~~la--------~~---~-----~~~v~gvDiS~-~~l~~A~------~~~---~~~~-~~--v~~~  319 (475)
T PLN02336        269 KVLDVGCGIGGGDFYMA--------EN---F-----DVHVVGIDLSV-NMISFAL------ERA---IGRK-CS--VEFE  319 (475)
T ss_pred             EEEEEeccCCHHHHHHH--------Hh---c-----CCEEEEEECCH-HHHHHHH------HHh---hcCC-Cc--eEEE
Confidence            79999999998665432        11   0     24677777532 1111111      000   0110 11  2223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+.+....+|++++|+++|..++||+..                      ...+|+.-++-|+|||++++....+....+
T Consensus       320 ~~d~~~~~~~~~~fD~I~s~~~l~h~~d----------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~  377 (475)
T PLN02336        320 VADCTKKTYPDNSFDVIYSRDTILHIQD----------------------KPALFRSFFKWLKPGGKVLISDYCRSPGTP  377 (475)
T ss_pred             EcCcccCCCCCCCEEEEEECCcccccCC----------------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCC
Confidence            4566777789999999999999999544                      356677788899999999999876654322


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccch
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYAR  242 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~  242 (300)
                      .  ..+...+.   .              .-...++.+++.++++++| |++..++.+...                  +
T Consensus       378 ~--~~~~~~~~---~--------------~g~~~~~~~~~~~~l~~aG-F~~i~~~d~~~~------------------~  419 (475)
T PLN02336        378 S--PEFAEYIK---Q--------------RGYDLHDVQAYGQMLKDAG-FDDVIAEDRTDQ------------------F  419 (475)
T ss_pred             c--HHHHHHHH---h--------------cCCCCCCHHHHHHHHHHCC-CeeeeeecchHH------------------H
Confidence            1  11111111   1              1124568999999999999 988765533211                  2


Q ss_pred             HHHHHHHHHHh---hhhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960          243 GKYVTKHVRAV---GESFLANLFDDATVDEIHRRFATKVTDV  281 (300)
Q Consensus       243 ~~~~a~~iRA~---~ep~l~~hfge~i~delf~r~~~~~~~~  281 (300)
                      ...+..+..++   .+.++ ..+|++..+.+...+.+.+...
T Consensus       420 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~  460 (475)
T PLN02336        420 LQVLQRELDAVEKEKDEFI-SDFSEEDYNDIVGGWKAKLVRS  460 (475)
T ss_pred             HHHHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHhHHHHHhhh
Confidence            23333333322   23333 3488888888888888887765

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.73  E-value=8e-07  Score=81.02  Aligned_cols=116  Identities=11%  Similarity=0.193  Sum_probs=75.1

Q ss_pred             ccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCC
Q 045960           85 SFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATP  164 (300)
Q Consensus        85 SFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~  164 (300)
                      ..-.--+|++++|+|+|+.++||..+                      ...+|+.-.+-|+|||++++...+.++-    
T Consensus        93 d~~~~~~~~~~fD~V~s~~~l~~~~d----------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~----  146 (251)
T PRK10258         93 DIESLPLATATFDLAWSNLAVQWCGN----------------------LSTALRELYRVVRPGGVVAFTTLVQGSL----  146 (251)
T ss_pred             CcccCcCCCCcEEEEEECchhhhcCC----------------------HHHHHHHHHHHcCCCeEEEEEeCCCCch----
Confidence            33333478899999999999999554                      4566777789999999999998877542    


Q ss_pred             chHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccchHH
Q 045960          165 GEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGK  244 (300)
Q Consensus       165 ~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~  244 (300)
                       .-+.++|..+   +        .- ....-+++.+|+...+...+ +++ ..+.+...++.                +.
T Consensus       147 -~el~~~~~~~---~--------~~-~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~~f~~----------------~~  195 (251)
T PRK10258        147 -PELHQAWQAV---D--------ER-PHANRFLPPDAIEQALNGWR-YQH-HIQPITLWFDD----------------AL  195 (251)
T ss_pred             -HHHHHHHHHh---c--------cC-CccccCCCHHHHHHHHHhCC-cee-eeeEEEEECCC----------------HH
Confidence             2244555432   1        11 12234578999999998766 443 34444444322                45


Q ss_pred             HHHHHHHHhhhhH
Q 045960          245 YVTKHVRAVGESF  257 (300)
Q Consensus       245 ~~a~~iRA~~ep~  257 (300)
                      .+...+|......
T Consensus       196 ~~l~~lk~~G~~~  208 (251)
T PRK10258        196 SAMRSLKGIGATH  208 (251)
T ss_pred             HHHHHHHHhCCCC
Confidence            5666677655443

>TIGR00740 methyltransferase, putative

Probab=98.72  E-value=9.2e-08  Score=86.76  Aligned_cols=161  Identities=17%  Similarity=0.211  Sum_probs=95.5

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..+..+.+.+             ..|..+|+.-|+-. +.-...+      ..... .+.. .+  +..+
T Consensus        56 ~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-~ml~~a~------~~~~~-~~~~-~~--v~~~  111 (239)
T TIGR00740        56 NVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCR------QHIAA-YHSE-IP--VEIL  111 (239)
T ss_pred             EEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHH------HHHHh-cCCC-CC--eEEE
Confidence            79999999998776554321             12457788887522 1111111      11111 1110 12  2224


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+++..--+|  +.|++++++++||++.                    .|...+|+.-.+-|+|||++++.-..+.+...
T Consensus       112 ~~d~~~~~~~--~~d~v~~~~~l~~~~~--------------------~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~  169 (239)
T TIGR00740       112 CNDIRHVEIK--NASMVILNFTLQFLPP--------------------EDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK  169 (239)
T ss_pred             ECChhhCCCC--CCCEEeeecchhhCCH--------------------HHHHHHHHHHHHhcCCCeEEEEeecccCCCHh
Confidence            5666543333  5789999999999643                    24567888899999999999887544433221


Q ss_pred             CCchHHHHHHHHHHH-cCCCchhhh----ccccCCCcccCCHHHHHHHHHhcCCee
Q 045960          163 TPGEPMLMVLKDMIS-EGLAEESKV----KSFEDFPIYRASVDEVKQIVKKEGSFD  213 (300)
Q Consensus       163 ~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~~P~y~~s~eE~~~~i~~~gsF~  213 (300)
                      .. +.+...+..... +| .+++++    +.+ .-.....|++|++++++++| |+
T Consensus       170 ~~-~~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~s~~~~~~~l~~aG-F~  221 (239)
T TIGR00740       170 IN-HLLIDLHHQFKRANG-YSELEISQKRTAL-ENVMRTDSIETHKARLKNVG-FS  221 (239)
T ss_pred             HH-HHHHHHHHHHHHHcC-CCHHHHHHHHHHH-hccCCCCCHHHHHHHHHHcC-Cc
Confidence            11 344444444443 34 355443    333 23345579999999999999 65

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.72  E-value=5.9e-07  Score=83.16  Aligned_cols=195  Identities=16%  Similarity=0.216  Sum_probs=112.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||+.|..+..+.        +..        ..+|+..|+..+ .....+..          ... ..+  +..
T Consensus        54 ~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~-~~~~a~~~----------~~~-~~~--i~~  103 (263)
T PTZ00098         54 SKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEK-MVNIAKLR----------NSD-KNK--IEF  103 (263)
T ss_pred             CEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHH-HHHHHHHH----------cCc-CCc--eEE
Confidence            379999999999876543        110        246777775321 11111110          000 011  222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+++...-+|++++|+++|+.++|+++.                    .|...+|+.-++-|+|||+++++-....+..
T Consensus       104 ~~~D~~~~~~~~~~FD~V~s~~~l~h~~~--------------------~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~  163 (263)
T PTZ00098        104 EANDILKKDFPENTFDMIYSRDAILHLSY--------------------ADKKKLFEKCYKWLKPNGILLITDYCADKIE  163 (263)
T ss_pred             EECCcccCCCCCCCeEEEEEhhhHHhCCH--------------------HHHHHHHHHHHHHcCCCcEEEEEEecccccc
Confidence            44566666689999999999988776331                    2467788888999999999999866554321


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccc
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYA  241 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~  241 (300)
                      .     ....+.+....          . .  +..++++|+.++++++| |+....+-....|..              .
T Consensus       164 ~-----~~~~~~~~~~~----------~-~--~~~~~~~~~~~~l~~aG-F~~v~~~d~~~~~~~--------------~  210 (263)
T PTZ00098        164 N-----WDEEFKAYIKK----------R-K--YTLIPIQEYGDLIKSCN-FQNVVAKDISDYWLE--------------L  210 (263)
T ss_pred             C-----cHHHHHHHHHh----------c-C--CCCCCHHHHHHHHHHCC-CCeeeEEeCcHHHHH--------------H
Confidence            1     11122221111          1 1  23469999999999999 887666543222211              0


Q ss_pred             hHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960          242 RGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDV  281 (300)
Q Consensus       242 ~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~  281 (300)
                      + ..+...+++- +.-+.+.+|++..+.+-.-+.+.+...
T Consensus       211 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (263)
T PTZ00098        211 L-QVELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIKDT  248 (263)
T ss_pred             H-HHHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence            1 1222223322 233444588877777777776666544

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.71  E-value=4.7e-07  Score=81.50  Aligned_cols=165  Identities=12%  Similarity=0.229  Sum_probs=103.8

Q ss_pred             cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchH
Q 045960           88 TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEP  167 (300)
Q Consensus        88 ~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~  167 (300)
                      ...-|....|++||+++||||.+                      +...|..--.+|.|||.+-++|++.-+. +     
T Consensus        85 ~~w~p~~~~dllfaNAvlqWlpd----------------------H~~ll~rL~~~L~Pgg~LAVQmPdN~de-p-----  136 (257)
T COG4106          85 RTWKPEQPTDLLFANAVLQWLPD----------------------HPELLPRLVSQLAPGGVLAVQMPDNLDE-P-----  136 (257)
T ss_pred             hhcCCCCccchhhhhhhhhhccc----------------------cHHHHHHHHHhhCCCceEEEECCCccCc-h-----
Confidence            34568899999999999999544                      3445555667899999999999755332 2     


Q ss_pred             HHHHHHHHHHcCCCchhhhccccCC-CcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccchHHHH
Q 045960          168 MLMVLKDMISEGLAEESKVKSFEDF-PIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYV  246 (300)
Q Consensus       168 l~~al~~mv~eG~i~~e~~d~f~~~-P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~  246 (300)
                      -..++++.++++-... ++.++ .+ =---+|+.-|-.++..-++ +|+--++   -+..   .         -.++..+
T Consensus       137 sH~~mr~~A~~~p~~~-~l~~~-~~~r~~v~s~a~Yy~lLa~~~~-rvDiW~T---~Y~h---~---------l~~a~aI  198 (257)
T COG4106         137 SHRLMRETADEAPFAQ-ELGGR-GLTRAPLPSPAAYYELLAPLAC-RVDIWHT---TYYH---Q---------LPGADAI  198 (257)
T ss_pred             hHHHHHHHHhcCchhh-hhCcc-ccccCCCCCHHHHHHHhCcccc-eeeeeee---eccc---c---------CCCccch
Confidence            2356666666653332 23332 11 0112577888888876652 2222222   2111   1         1235689


Q ss_pred             HHHHHHhhh-hHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCC----eEEEEEEEee
Q 045960          247 TKHVRAVGE-SFLANLFDDATVDEIHRRFATKVTDVVLDKGRGA----YASLLISLVK  299 (300)
Q Consensus       247 a~~iRA~~e-p~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~----~~~~~~~l~r  299 (300)
                      ..|+++... |+|.. ++++-...+-++|..++.+..+....++    |.-++|+-+|
T Consensus       199 vdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~  255 (257)
T COG4106         199 VDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATR  255 (257)
T ss_pred             hhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEec
Confidence            999996654 88887 8999999999999999998743333332    3345555544

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.71  E-value=4e-08  Score=87.47  Aligned_cols=104  Identities=18%  Similarity=0.209  Sum_probs=69.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||++|..+..+...            +   |..++...|...+.-+..-+.++.             +-.|   
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~------------~---~~~~~~~~D~~~~~~~~~~~~~~~-------------~~~~---   84 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKR------------F---PQAEFIALDISAGMLAQAKTKLSE-------------NVQF---   84 (240)
T ss_pred             CeEEEECCCccHHHHHHHHh------------C---CCCcEEEEeChHHHHHHHHHhcCC-------------CCeE---
Confidence            37999999999876644321            1   345678888644333222222210             1112   


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      +-+++....+|++++|+++++.++||+..                      ...+|+...+-|+|||.+++...+.+
T Consensus        85 ~~~d~~~~~~~~~~fD~vi~~~~l~~~~~----------------------~~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072        85 ICGDAEKLPLEDSSFDLIVSNLALQWCDD----------------------LSQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             EecchhhCCCCCCceeEEEEhhhhhhccC----------------------HHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            33455566678999999999999999644                      46788889999999999998876543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR00452 methyltransferase, putative

Probab=98.67  E-value=3.4e-07  Score=87.15  Aligned_cols=93  Identities=24%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHH
Q 045960           89 RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPM  168 (300)
Q Consensus        89 ~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l  168 (300)
                      .+-+.+++|.|+|+.+|||+..                      ...+|+.-++-|+|||.||+...........     
T Consensus       182 ~lp~~~~FD~V~s~gvL~H~~d----------------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~-----  234 (314)
T TIGR00452       182 QLHELYAFDTVFSMGVLYHRKS----------------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNT-----  234 (314)
T ss_pred             HCCCCCCcCEEEEcchhhccCC----------------------HHHHHHHHHHhcCCCCEEEEEEEEecCcccc-----
Confidence            3334568999999999999543                      3557788899999999999987543321110     


Q ss_pred             HHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          169 LMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       169 ~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                        +        +...+....+ .-.++.||.+++..++++.| |+..++...
T Consensus       235 --~--------l~p~~ry~k~-~nv~flpS~~~L~~~L~~aG-F~~V~i~~~  274 (314)
T TIGR00452       235 --V--------LVPKDRYAKM-KNVYFIPSVSALKNWLEKVG-FENFRILDV  274 (314)
T ss_pred             --c--------cCchHHHHhc-cccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence              0        1122223334 44566789999999999999 887665544

Known examples to date are restricted to the proteobacteria.

>PRK08317 hypothetical protein; Provisional

Probab=98.66  E-value=5.1e-06  Score=73.63  Aligned_cols=218  Identities=18%  Similarity=0.109  Sum_probs=113.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||+.|..+..+....              .|.-+++.-|+-.+-....-+.         . .... .++  ..
T Consensus        21 ~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~---------~-~~~~-~~~--~~   73 (241)
T PRK08317         21 DRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKER---------A-AGLG-PNV--EF   73 (241)
T ss_pred             CEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHH---------h-hCCC-Cce--EE
Confidence            379999999998666443322              1234677777532111111000         0 0000 111  11


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC-
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF-  160 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~-  160 (300)
                      +.+.+...-+|++++|++++..++||+.+                      ...+|+.-.+-|+|||.+++....-... 
T Consensus        74 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~~----------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  131 (241)
T PRK08317         74 VRGDADGLPFPDGSFDAVRSDRVLQHLED----------------------PARALAEIARVLRPGGRVVVLDTDWDTLV  131 (241)
T ss_pred             EecccccCCCCCCCceEEEEechhhccCC----------------------HHHHHHHHHHHhcCCcEEEEEecCCCcee
Confidence            22333333467889999999999999655                      4566777888999999999876432111 


Q ss_pred             -CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcc
Q 045960          161 -HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDK  239 (300)
Q Consensus       161 -~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~  239 (300)
                       .+.....+...+..+..          .+ .-|   .+..++...++++| |+..+++.....+...          +.
T Consensus       132 ~~~~~~~~~~~~~~~~~~----------~~-~~~---~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~~----------~~  186 (241)
T PRK08317        132 WHSGDRALMRKILNFWSD----------HF-ADP---WLGRRLPGLFREAG-LTDIEVEPYTLIETDL----------KE  186 (241)
T ss_pred             ecCCChHHHHHHHHHHHh----------cC-CCC---cHHHHHHHHHHHcC-CCceeEEEEEEeccCc----------ch
Confidence             00010223333222211          11 111   23568999999998 8888877775543220          01


Q ss_pred             cchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeEEEEEEEeeC
Q 045960          240 YARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK  300 (300)
Q Consensus       240 ~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~l~r~  300 (300)
                      ......+...++.+.+   .....++-++++++.+++.....    .-.-...+++...||
T Consensus       187 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~k  240 (241)
T PRK08317        187 ADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLARAG----EFFFSVTGFLVVGRK  240 (241)
T ss_pred             hhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHhcC----CEEEEEEEEEEEEeC
Confidence            1112233333443322   12234555677777666654432    111235556665554

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.66  E-value=1.2e-07  Score=85.20  Aligned_cols=168  Identities=15%  Similarity=0.230  Sum_probs=92.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..+..+...        .      .|..+|+..|+-. ..-...+      ..... .+  ..++  .-+
T Consensus        48 ~vLDiGcG~G~~~~~la~~--------~------~~~~~v~gvD~s~-~~~~~a~------~~~~~-~~--~~~v--~~~  101 (231)
T TIGR02752        48 SALDVCCGTADWSIALAEA--------V------GPEGHVIGLDFSE-NMLSVGR------QKVKD-AG--LHNV--ELV  101 (231)
T ss_pred             EEEEeCCCcCHHHHHHHHH--------h------CCCCEEEEEECCH-HHHHHHH------HHHHh-cC--CCce--EEE
Confidence            7999999999977643321        1      1345777777532 1111111      11111 01  1222  223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      .+....--+|++++|+|+++.++||++.                      ...+|+.-.+-|+|||++++.-.+.++...
T Consensus       102 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~----------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~  159 (231)
T TIGR02752       102 HGNAMELPFDDNSFDYVTIGFGLRNVPD----------------------YMQVLREMYRVVKPGGKVVCLETSQPTIPG  159 (231)
T ss_pred             EechhcCCCCCCCccEEEEecccccCCC----------------------HHHHHHHHHHHcCcCeEEEEEECCCCCChH
Confidence            4444444468899999999999999654                      345677778899999999876655443211


Q ss_pred             CCchHHHHHHHHHHH--cCCCchh--hhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 TPGEPMLMVLKDMIS--EGLAEES--KVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~~~~~l~~al~~mv~--eG~i~~e--~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      .. ......+..+..  .+.+..+  +.......-..+++.+|+++.+++.| |++.+++.+
T Consensus       160 ~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~  219 (231)
T TIGR02752       160 FK-QLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG-FKDVEVKSY  219 (231)
T ss_pred             HH-HHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence            00 111111111000  0011100  00000011235689999999999999 998877665

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.61  E-value=1.2e-06  Score=81.15  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++|+|++++++++||+.+                      ...+|+.-++-|||||++++.-.+.++... . ..+..
T Consensus       141 ~~~~sfD~V~~~~~l~~~~d----------------------~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~-~-~~~~~  196 (261)
T PLN02233        141 FDDCYFDAITMGYGLRNVVD----------------------RLKAMQEMYRVLKPGSRVSILDFNKSTQPF-T-TSMQE  196 (261)
T ss_pred             CCCCCEeEEEEecccccCCC----------------------HHHHHHHHHHHcCcCcEEEEEECCCCCcHH-H-HHHHH
Confidence            78999999999999999543                      466788889999999999998777654311 0 11111


Q ss_pred             HHHH-----HHH-cCCCchhhhccccCCC---cccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          171 VLKD-----MIS-EGLAEESKVKSFEDFP---IYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       171 al~~-----mv~-eG~i~~e~~d~f~~~P---~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      -+.+     +.. -|.  .   +.+..++   -.+++++|+.+.+++.| |++.+..
T Consensus       197 ~~~~~~~~~~~~~~~~--~---~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~  247 (261)
T PLN02233        197 WMIDNVVVPVATGYGL--A---KEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHY  247 (261)
T ss_pred             HHHhhhhhHHHHHhCC--h---HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEE
Confidence            1100     000 021  1   1110011   13689999999999999 8866543

>PLN02244 tocopherol O-methyltransferase

Probab=98.60  E-value=2.9e-06  Score=81.43  Aligned_cols=100  Identities=12%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +...+--||++++|+|+|..++|++.+                      ...+|+.-.+-|||||++++......+..+.
T Consensus       175 ~D~~~~~~~~~~FD~V~s~~~~~h~~d----------------------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~  232 (340)
T PLN02244        175 ADALNQPFEDGQFDLVWSMESGEHMPD----------------------KRKFVQELARVAAPGGRIIIVTWCHRDLEPG  232 (340)
T ss_pred             cCcccCCCCCCCccEEEECCchhccCC----------------------HHHHHHHHHHHcCCCcEEEEEEecccccccc
Confidence            444444578999999999999998533                      3466777788899999999986554332211


Q ss_pred             Cc---hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          164 PG---EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       164 ~~---~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      ..   ..-...+..+.          ..+ .+|. ..+.+|+.+++++.| |...+.+
T Consensus       233 ~~~l~~~~~~~~~~i~----------~~~-~~p~-~~s~~~~~~~l~~aG-f~~v~~~  277 (340)
T PLN02244        233 ETSLKPDEQKLLDKIC----------AAY-YLPA-WCSTSDYVKLAESLG-LQDIKTE  277 (340)
T ss_pred             cccCCHHHHHHHHHHH----------hhc-cCCC-CCCHHHHHHHHHHCC-CCeeEee
Confidence            10   11111222111          223 3442 358999999999999 8876554

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.52  E-value=4.2e-07  Score=75.93  Aligned_cols=90  Identities=24%  Similarity=0.266  Sum_probs=63.9

Q ss_pred             cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchH
Q 045960           88 TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEP  167 (300)
Q Consensus        88 ~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~  167 (300)
                      ...+|++++|+|+|+.+|||+..                      +..+|+.-.+=|+|||++++....+...       
T Consensus        71 ~~~~~~~~fD~i~~~~~l~~~~d----------------------~~~~l~~l~~~LkpgG~l~~~~~~~~~~-------  121 (161)
T PF13489_consen   71 DPPFPDGSFDLIICNDVLEHLPD----------------------PEEFLKELSRLLKPGGYLVISDPNRDDP-------  121 (161)
T ss_dssp             THHCHSSSEEEEEEESSGGGSSH----------------------HHHHHHHHHHCEEEEEEEEEEEEBTTSH-------
T ss_pred             hhhccccchhhHhhHHHHhhccc----------------------HHHHHHHHHHhcCCCCEEEEEEcCCcch-------
Confidence            44468899999999999999554                      6788889999999999999999877431       


Q ss_pred             HHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960          168 MLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE  216 (300)
Q Consensus       168 l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~  216 (300)
                      ....+..+   ....   ..   +--..+.+.++++.++++.| |+|.+
T Consensus       122 ~~~~~~~~---~~~~---~~---~~~~~~~~~~~~~~ll~~~G-~~iv~  160 (161)
T PF13489_consen  122 SPRSFLKW---RYDR---PY---GGHVHFFSPDELRQLLEQAG-FEIVE  160 (161)
T ss_dssp             HHHHHHHC---CGTC---HH---TTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred             hhhHHHhc---CCcC---cc---CceeccCCHHHHHHHHHHCC-CEEEE
Confidence            11222221   1111   01   01125669999999999999 88754

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.46  E-value=5.3e-06  Score=76.08  Aligned_cols=99  Identities=17%  Similarity=0.271  Sum_probs=63.9

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|++++..+|||+..       |               ..+|+.-++-|+|||++++.+.....      -.+..
T Consensus       108 ~~~~~fD~V~~~~vl~~~~~-------~---------------~~~l~~~~~~LkpgG~l~i~~~n~~~------~~~~~  159 (255)
T PRK11036        108 HLETPVDLILFHAVLEWVAD-------P---------------KSVLQTLWSVLRPGGALSLMFYNANG------LLMHN  159 (255)
T ss_pred             hcCCCCCEEEehhHHHhhCC-------H---------------HHHHHHHHHHcCCCeEEEEEEECccH------HHHHH
Confidence            46789999999999999765       2               34556667789999999988754321      01111


Q ss_pred             HHH---HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          171 VLK---DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       171 al~---~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      .+.   +.+..|+...   ..+.-.|.+..+++|+.+++++.| |++.+..-+.
T Consensus       160 ~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi~  209 (255)
T PRK11036        160 MVAGNFDYVQAGMPKR---KKRTLSPDYPLDPEQVYQWLEEAG-WQIMGKTGVR  209 (255)
T ss_pred             HHccChHHHHhcCccc---cccCCCCCCCCCHHHHHHHHHHCC-CeEeeeeeEE
Confidence            111   1122232211   112024667789999999999998 9988766554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.43  E-value=4.7e-06  Score=76.25  Aligned_cols=162  Identities=18%  Similarity=0.216  Sum_probs=93.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|.+++.+...+             ..|..+|+.-|. +-+.-...+.      .... .+.. .++  ..+
T Consensus        59 ~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~-S~~ml~~A~~------~~~~-~~~~-~~v--~~~  114 (247)
T PRK15451         59 QVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDN-SPAMIERCRR------HIDA-YKAP-TPV--DVI  114 (247)
T ss_pred             EEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeC-CHHHHHHHHH------HHHh-cCCC-CCe--EEE
Confidence            79999999999876543211             123466776662 1122222211      1111 0110 111  123


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      .+++..-  |....|+++++.++||+..                    .+...+|+.-++-|+|||.+++.=.-......
T Consensus       115 ~~d~~~~--~~~~~D~vv~~~~l~~l~~--------------------~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~  172 (247)
T PRK15451        115 EGDIRDI--AIENASMVVLNFTLQFLEP--------------------SERQALLDKIYQGLNPGGALVLSEKFSFEDAK  172 (247)
T ss_pred             eCChhhC--CCCCCCEEehhhHHHhCCH--------------------HHHHHHHHHHHHhcCCCCEEEEEEecCCCcch
Confidence            4555432  3345899999999999653                    12456778889999999999987432322211


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhcc----ccCCCcccCCHHHHHHHHHhcCCee
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKS----FEDFPIYRASVDEVKQIVKKEGSFD  213 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~----f~~~P~y~~s~eE~~~~i~~~gsF~  213 (300)
                       .++.+...+.++....=.+++++..    .++ -...-|+++..+++++.| |+
T Consensus       173 -~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~-~~~~~~~~~~~~~L~~aG-F~  224 (247)
T PRK15451        173 -VGELLFNMHHDFKRANGYSELEISQKRSMLEN-VMLTDSVETHKARLHKAG-FE  224 (247)
T ss_pred             -hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-hcccCCHHHHHHHHHHcC-ch
Confidence             1255666777766554566655533    212 112248999999999999 54

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.42  E-value=4.2e-06  Score=74.69  Aligned_cols=83  Identities=14%  Similarity=0.245  Sum_probs=61.1

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      +++|+++|..++|++.+                      +..+|+.-++-|+|||++++.-.......            
T Consensus        66 ~~fD~I~~~~~l~~~~~----------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------------  111 (224)
T smart00828       66 DTYDLVFGFEVIHHIKD----------------------KMDLFSNISRHLKDGGHLVLADFIANLLS------------  111 (224)
T ss_pred             CCCCEeehHHHHHhCCC----------------------HHHHHHHHHHHcCCCCEEEEEEcccccCc------------
Confidence            58999999999999543                      56788888999999999998754321100            


Q ss_pred             HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                           +      ...- ..+.|.++.+|+.+.+++.| |++.+.+.+...
T Consensus       112 -----~------~~~~-~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~~~  148 (224)
T smart00828      112 -----A------IEHE-ETTSYLVTREEWAELLARNN-LRVVEGVDASLE  148 (224)
T ss_pred             -----c------cccc-ccccccCCHHHHHHHHHHCC-CeEEEeEECcHh
Confidence                 0      0111 24567899999999999998 999887766443

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.41  E-value=3.4e-06  Score=77.35  Aligned_cols=160  Identities=22%  Similarity=0.233  Sum_probs=94.7

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|+|+||++|--++.+...+           +    +-+|..-|.-.+       .|....++..+. +  ..+  +.=
T Consensus        53 ~~vLDva~GTGd~a~~~~k~~-----------g----~g~v~~~D~s~~-------ML~~a~~k~~~~-~--~~~--i~f  105 (238)
T COG2226          53 DKVLDVACGTGDMALLLAKSV-----------G----TGEVVGLDISES-------MLEVAREKLKKK-G--VQN--VEF  105 (238)
T ss_pred             CEEEEecCCccHHHHHHHHhc-----------C----CceEEEEECCHH-------HHHHHHHHhhcc-C--ccc--eEE
Confidence            479999999998877554322           1    356666663221       111111111110 0  112  232


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      |=|..-+=-||++|+|++.+++.||++.+                      -...|+--+|=|||||++++.=.+++...
T Consensus       106 v~~dAe~LPf~D~sFD~vt~~fglrnv~d----------------------~~~aL~E~~RVlKpgG~~~vle~~~p~~~  163 (238)
T COG2226         106 VVGDAENLPFPDNSFDAVTISFGLRNVTD----------------------IDKALKEMYRVLKPGGRLLVLEFSKPDNP  163 (238)
T ss_pred             EEechhhCCCCCCccCEEEeeehhhcCCC----------------------HHHHHHHHHHhhcCCeEEEEEEcCCCCch
Confidence            33455555599999999999999999665                      34456667889999999988877776543


Q ss_pred             CCCchHHHHHHHHHHHc------C-CCc--hhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960          162 ATPGEPMLMVLKDMISE------G-LAE--ESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE  216 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~e------G-~i~--~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~  216 (300)
                      ..     ..+...+-..      | +++  .+++.-...-.--+|+.+++.+.++++| |+..+
T Consensus       164 ~~-----~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~  221 (238)
T COG2226         164 VL-----RKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR  221 (238)
T ss_pred             hh-----HHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence            32     2222221111      1 121  2222221123445799999999999998 77555

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.38  E-value=4e-06  Score=74.73  Aligned_cols=171  Identities=18%  Similarity=0.189  Sum_probs=93.5

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|+|+||+.|..+..+....              ++..+++..|+..+=.. ..+      ...... +.. .++  ..
T Consensus        53 ~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~-~a~------~~~~~~-~~~-~~~--~~  107 (239)
T PRK00216         53 DKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEGMLA-VGR------EKLRDL-GLS-GNV--EF  107 (239)
T ss_pred             CeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHHHHH-HHH------Hhhccc-ccc-cCe--EE
Confidence            479999999998776543321              12467788886432111 111      000000 000 122  12


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+++....++.+++|++++++++|++++                      ...+|+...+-|+|||++++.-...+...
T Consensus       108 ~~~d~~~~~~~~~~~D~I~~~~~l~~~~~----------------------~~~~l~~~~~~L~~gG~li~~~~~~~~~~  165 (239)
T PRK00216        108 VQGDAEALPFPDNSFDAVTIAFGLRNVPD----------------------IDKALREMYRVLKPGGRLVILEFSKPTNP  165 (239)
T ss_pred             EecccccCCCCCCCccEEEEecccccCCC----------------------HHHHHHHHHHhccCCcEEEEEEecCCCch
Confidence            33455555577889999999999999655                      34567778889999999887655443321


Q ss_pred             CCCchHHHHHHHH-HHHc-C-CCch--hhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          162 ATPGEPMLMVLKD-MISE-G-LAEE--SKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       162 ~~~~~~l~~al~~-mv~e-G-~i~~--e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                      . . ..+.+.+.. +... + .+..  +..+.+...-..+++.+|+..++++.| |++.+...+.-
T Consensus       166 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~  228 (239)
T PRK00216        166 P-L-KKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNLTG  228 (239)
T ss_pred             H-H-HHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeeeec
Confidence            1 1 111111111 0000 0 0000  001110000123579999999999999 88877776543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.31  E-value=8.9e-05  Score=72.49  Aligned_cols=140  Identities=12%  Similarity=0.189  Sum_probs=87.4

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ++++|.++|...+||+..                    +++..+++.-.+-|+|||++++...+.+.....         
T Consensus       226 ~~~fD~Ivs~~~~ehvg~--------------------~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~---------  276 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGP--------------------KNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTN---------  276 (383)
T ss_pred             CCCCCEEEEeCchhhCCh--------------------HHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCC---------
Confidence            578999999999999422                    346678888899999999999988776542110         


Q ss_pred             HHHHHcCCCchhhhccccCCCc-ccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccchHHHHHHHHH
Q 045960          173 KDMISEGLAEESKVKSFEDFPI-YRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVR  251 (300)
Q Consensus       173 ~~mv~eG~i~~e~~d~f~~~P~-y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~iR  251 (300)
                               ...-++.+ .+|- +.|+++++.+..+ .| |++..++.+..+                  +++++..|.+
T Consensus       277 ---------~~~~i~~y-ifp~g~lps~~~i~~~~~-~~-~~v~d~~~~~~h------------------y~~TL~~W~~  326 (383)
T PRK11705        277 ---------VDPWINKY-IFPNGCLPSVRQIAQASE-GL-FVMEDWHNFGAD------------------YDRTLMAWHE  326 (383)
T ss_pred             ---------CCCCceee-ecCCCcCCCHHHHHHHHH-CC-cEEEEEecChhh------------------HHHHHHHHHH
Confidence                     01123455 6774 6899999999877 34 888877754222                  2344444443


Q ss_pred             Hhhhh--HHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeEEE
Q 045960          252 AVGES--FLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASL  293 (300)
Q Consensus       252 A~~ep--~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~~~  293 (300)
                      .+-..  -+.+-+|+.. -.+++.|-.-.+.. ++.....-..+
T Consensus       327 ~f~~~~~~~~~~~~~~~-~r~w~~yl~~~~~~-F~~~~~~~~q~  368 (383)
T PRK11705        327 NFEAAWPELADNYSERF-YRMWRYYLLSCAGA-FRARDIQLWQV  368 (383)
T ss_pred             HHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHH-HhCCCceEEEE
Confidence            33221  1233456544 33566666666666 55554444444

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.29  E-value=7.4e-06  Score=78.86  Aligned_cols=147  Identities=15%  Similarity=0.143  Sum_probs=88.6

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||++|..++.+.+..               +..+|...|+-.+ .-...+...          .  ..++  ..
T Consensus       115 ~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~~-mL~~A~~k~----------~--~~~i--~~  164 (340)
T PLN02490        115 LKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSPH-QLAKAKQKE----------P--LKEC--KI  164 (340)
T ss_pred             CEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCHH-HHHHHHHhh----------h--ccCC--eE
Confidence            479999999998776443210               1246777775222 111111100          0  0111  11


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.++....-+|++++|+++++.++|++.+                      ....|+.-.+-|+|||++++.-...++  
T Consensus       165 i~gD~e~lp~~~~sFDvVIs~~~L~~~~d----------------------~~~~L~e~~rvLkPGG~LvIi~~~~p~--  220 (340)
T PLN02490        165 IEGDAEDLPFPTDYADRYVSAGSIEYWPD----------------------PQRGIKEAYRVLKIGGKACLIGPVHPT--  220 (340)
T ss_pred             EeccHHhCCCCCCceeEEEEcChhhhCCC----------------------HHHHHHHHHHhcCCCcEEEEEEecCcc--
Confidence            44555554578899999999999998443                      234677788999999999875322211  


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecc
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSW  224 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~  224 (300)
                          ..+..-+.             +.+    ..+++.+|+.+++++.| |+..+++.+...|
T Consensus       221 ----~~~~r~~~-------------~~~----~~~~t~eEl~~lL~~aG-F~~V~i~~i~~~~  261 (340)
T PLN02490        221 ----FWLSRFFA-------------DVW----MLFPKEEEYIEWFTKAG-FKDVKLKRIGPKW  261 (340)
T ss_pred             ----hhHHHHhh-------------hhh----ccCCCHHHHHHHHHHCC-CeEEEEEEcChhh
Confidence                01111000             111    13579999999999998 9887777665544

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.26  E-value=9e-06  Score=77.72  Aligned_cols=102  Identities=16%  Similarity=0.090  Sum_probs=64.7

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +++..--++++++|+|++..+|||+.+                      ...||+.-++-|||||++++....+...   
T Consensus       187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d----------------------~~~~L~~l~r~LkPGG~liist~nr~~~---  241 (322)
T PLN02396        187 TTAEKLADEGRKFDAVLSLEVIEHVAN----------------------PAEFCKSLSALTIPNGATVLSTINRTMR---  241 (322)
T ss_pred             cCHHHhhhccCCCCEEEEhhHHHhcCC----------------------HHHHHHHHHHHcCCCcEEEEEECCcCHH---
Confidence            444433356789999999999999655                      3567778888899999999998654311   


Q ss_pred             CchHHHHHH--HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          164 PGEPMLMVL--KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       164 ~~~~l~~al--~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                         .....+  .+.+. +.+.    ... .....+.+++|+.+++++.| |++..+.-+
T Consensus       242 ---~~~~~i~~~eyi~-~~lp----~gt-h~~~~f~tp~eL~~lL~~aG-f~i~~~~G~  290 (322)
T PLN02396        242 ---AYASTIVGAEYIL-RWLP----KGT-HQWSSFVTPEELSMILQRAS-VDVKEMAGF  290 (322)
T ss_pred             ---HHHHhhhhHHHHH-hcCC----CCC-cCccCCCCHHHHHHHHHHcC-CeEEEEeee
Confidence               010110  00000 0111    011 11224689999999999998 888877544

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.22  E-value=3e-06  Score=64.18  Aligned_cols=50  Identities=34%  Similarity=0.424  Sum_probs=40.7

Q ss_pred             ecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           81 ASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        81 ~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      -+-+++..--||++|+|+++++.++||+   +                   |...+|+.-++=|||||++++
T Consensus        46 ~~~~d~~~l~~~~~sfD~v~~~~~~~~~---~-------------------~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   46 FRQGDAEDLPFPDNSFDVVFSNSVLHHL---E-------------------DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEESBTTSSSS-TT-EEEEEEESHGGGS---S-------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             heeehHHhCccccccccccccccceeec---c-------------------CHHHHHHHHHHHcCcCeEEeC
Confidence            3556677778999999999999999997   2                   467888899999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.21  E-value=2.8e-05  Score=68.88  Aligned_cols=77  Identities=14%  Similarity=0.276  Sum_probs=52.7

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ++++|+|+|+.++||+..                    .|...+++.-++-|+|||++++...-..+..+.         
T Consensus        93 ~~~fD~I~~~~~~~~~~~--------------------~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~---------  143 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEA--------------------KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---------  143 (197)
T ss_pred             CCCcCEEEEecchhhCCH--------------------HHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC---------
Confidence            467999999999999643                    246778888899999999965543222111110         


Q ss_pred             HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          173 KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       173 ~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                                     .- ..| +..+.+|+.+.++  | |++.+.+
T Consensus       144 ---------------~~-~~~-~~~~~~el~~~~~--~-~~~~~~~  169 (197)
T PRK11207        144 ---------------TV-GFP-FAFKEGELRRYYE--G-WEMVKYN  169 (197)
T ss_pred             ---------------CC-CCC-CccCHHHHHHHhC--C-CeEEEee
Confidence                           01 233 5578999999987  5 8876664

>PRK06202 hypothetical protein; Provisional

Probab=98.21  E-value=3.1e-05  Score=69.88  Aligned_cols=165  Identities=14%  Similarity=0.131  Sum_probs=86.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+...    .++       ..+..+|...|+-. +.-...+...          .. .+--+..+
T Consensus        62 ~~iLDlGcG~G~~~~~L~~~----~~~-------~g~~~~v~gvD~s~-~~l~~a~~~~----------~~-~~~~~~~~  118 (232)
T PRK06202         62 LTLLDIGCGGGDLAIDLARW----ARR-------DGLRLEVTAIDPDP-RAVAFARANP----------RR-PGVTFRQA  118 (232)
T ss_pred             cEEEEeccCCCHHHHHHHHH----HHh-------CCCCcEEEEEcCCH-HHHHHHHhcc----------cc-CCCeEEEE
Confidence            37999999999977743322    222       12346788888532 1111111110          00 01112222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      ....+   -++++++|+++|+.+|||+..                    .++..+|+.-++-++  |.+++.-+.++...
T Consensus       119 ~~~~l---~~~~~~fD~V~~~~~lhh~~d--------------------~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~  173 (232)
T PRK06202        119 VSDEL---VAEGERFDVVTSNHFLHHLDD--------------------AEVVRLLADSAALAR--RLVLHNDLIRSRLA  173 (232)
T ss_pred             ecccc---cccCCCccEEEECCeeecCCh--------------------HHHHHHHHHHHHhcC--eeEEEeccccCHHH
Confidence            22221   127789999999999999654                    123455555544444  55555555554211


Q ss_pred             CCCchHHHHHHHHHHHcCC-CchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecc
Q 045960          162 ATPGEPMLMVLKDMISEGL-AEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSW  224 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~-i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~  224 (300)
                          -.+..........|. +..   |.. .--.-++|.+|+.+.+++ | |++.+.-.+...|
T Consensus       174 ----~~~~~~~~~~~~~~~~~~~---d~~-~s~~~~~~~~el~~ll~~-G-f~~~~~~~~~~~~  227 (232)
T PRK06202        174 ----YALFWAGTRLLSRSSFVHT---DGL-LSVRRSYTPAELAALAPQ-G-WRVERQWPFRYLL  227 (232)
T ss_pred             ----HHHHHHHHHHhccCceeec---cch-HHHHhhcCHHHHHHHhhC-C-CeEEeccceeeEE
Confidence                111111111112122 222   222 222457899999999998 7 9998877665443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.21  E-value=6.4e-06  Score=65.05  Aligned_cols=93  Identities=23%  Similarity=0.293  Sum_probs=61.3

Q ss_pred             EEEeeCCCCCcccHHHHH--------------HHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhh
Q 045960            3 RFADLGCSSGPNALLPTW--------------EAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRT   68 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~--------------~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~   68 (300)
                      +|.|+||++|..++.+.+              ..++..++.....+ ..+.++++..|. .                   
T Consensus         4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~-~-------------------   62 (112)
T PF12847_consen    4 RVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA-E-------------------   62 (112)
T ss_dssp             EEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC-H-------------------
T ss_pred             EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc-c-------------------
Confidence            799999999999998887              45555555432222 123355555443 0                   


Q ss_pred             hcCCCCCceeeeecCCccccccCCCCcccEEEecc-ccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccC
Q 045960           69 EKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSY-ALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQ  147 (300)
Q Consensus        69 ~~~~~~~~~f~~~vpgSFy~~l~P~~sv~~~~Ss~-alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~G  147 (300)
                                        +..-+ ...+|+++++. ++|++-.                   ..+...+|+.-.+-|+||
T Consensus        63 ------------------~~~~~-~~~~D~v~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~L~pg  104 (112)
T PF12847_consen   63 ------------------FDPDF-LEPFDLVICSGFTLHFLLP-------------------LDERRRVLERIRRLLKPG  104 (112)
T ss_dssp             ------------------GGTTT-SSCEEEEEECSGSGGGCCH-------------------HHHHHHHHHHHHHHEEEE
T ss_pred             ------------------cCccc-CCCCCEEEECCCccccccc-------------------hhHHHHHHHHHHHhcCCC
Confidence                              11111 11289999999 8887433                   145788899999999999


Q ss_pred             ceeEEEE
Q 045960          148 GRMVLTL  154 (300)
Q Consensus       148 G~~vl~~  154 (300)
                      |++++.-
T Consensus       105 G~lvi~~  111 (112)
T PF12847_consen  105 GRLVINT  111 (112)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            9999863

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.20  E-value=2.3e-05  Score=69.06  Aligned_cols=165  Identities=15%  Similarity=0.157  Sum_probs=92.2

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||+.|..+..+....             + +..+++.-|.-. +.-...   .   ....   .  ..++-+  
T Consensus        41 ~~vldiG~G~G~~~~~~~~~~-------------~-~~~~~~~iD~~~-~~~~~~---~---~~~~---~--~~~i~~--   92 (223)
T TIGR01934        41 QKVLDVACGTGDLAIELAKSA-------------P-DRGKVTGVDFSS-EMLEVA---K---KKSE---L--PLNIEF--   92 (223)
T ss_pred             CeEEEeCCCCChhHHHHHHhc-------------C-CCceEEEEECCH-HHHHHH---H---HHhc---c--CCCceE--
Confidence            479999999998777553221             1 125677777521 111111   0   0000   0  012221  


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+++..-.++++++|+++++..+|++..                      ...+|+...+-|+|||++++.-.-.+...
T Consensus        93 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~~----------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  150 (223)
T TIGR01934        93 IQADAEALPFEDNSFDAVTIAFGLRNVTD----------------------IQKALREMYRVLKPGGRLVILEFSKPANA  150 (223)
T ss_pred             EecchhcCCCCCCcEEEEEEeeeeCCccc----------------------HHHHHHHHHHHcCCCcEEEEEEecCCCch
Confidence            23555555578889999999999999554                      45678888999999999987654333221


Q ss_pred             CCCchHHHHHHHH-HHH--cCCCchhhhccccCC----CcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          162 ATPGEPMLMVLKD-MIS--EGLAEESKVKSFEDF----PIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       162 ~~~~~~l~~al~~-mv~--eG~i~~e~~d~f~~~----P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      +.  ..+.+.+.. |..  .+..+.. .+.+ ..    ...+++.+|++.++++.| |++.+.+.+.
T Consensus       151 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~  212 (223)
T TIGR01934       151 LL--KKFYKFYLKNVLPSIGGLISKN-AEAY-TYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSLT  212 (223)
T ss_pred             hh--HHHHHHHHHHhhhhhhhhhcCC-chhh-HHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeeee
Confidence            11  122222221 110  1111111 1111 10    123579999999999999 8888777664

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.20  E-value=0.00029  Score=65.85  Aligned_cols=91  Identities=21%  Similarity=0.372  Sum_probs=57.7

Q ss_pred             cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHH
Q 045960           95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKD  174 (300)
Q Consensus        95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~  174 (300)
                      ++|-++|--++.-+   +                 .+++..|++.-++=|+|||++++...+..+...       .    
T Consensus       127 ~fD~IvSi~~~Ehv---g-----------------~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~-------~----  175 (273)
T PF02353_consen  127 KFDRIVSIEMFEHV---G-----------------RKNYPAFFRKISRLLKPGGRLVLQTITHRDPPY-------H----  175 (273)
T ss_dssp             S-SEEEEESEGGGT---C-----------------GGGHHHHHHHHHHHSETTEEEEEEEEEE--HHH-------H----
T ss_pred             CCCEEEEEechhhc---C-----------------hhHHHHHHHHHHHhcCCCcEEEEEecccccccc-------h----
Confidence            78888888887764   2                 235788999999999999999999887764210       0    


Q ss_pred             HHHcCCCchhhhccccCCCc-ccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          175 MISEGLAEESKVKSFEDFPI-YRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       175 mv~eG~i~~e~~d~f~~~P~-y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                        .+...+-+-+... .+|- +.|+.+|+...+++.| |+|.+.+.+
T Consensus       176 --~~~~~~~~~i~ky-iFPgg~lps~~~~~~~~~~~~-l~v~~~~~~  218 (273)
T PF02353_consen  176 --AERRSSSDFIRKY-IFPGGYLPSLSEILRAAEDAG-LEVEDVENL  218 (273)
T ss_dssp             --HCTTCCCHHHHHH-TSTTS---BHHHHHHHHHHTT--EEEEEEE-
T ss_pred             --hhcCCCceEEEEe-eCCCCCCCCHHHHHHHHhcCC-EEEEEEEEc
Confidence              1111111112333 4565 6689999999898887 888877655

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.16  E-value=5e-05  Score=67.14  Aligned_cols=77  Identities=10%  Similarity=0.178  Sum_probs=52.9

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ++++|+++|+.++||++.                    .++..+++.-++-|+|||++++...-..+..+          
T Consensus        92 ~~~fD~I~~~~~~~~~~~--------------------~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~----------  141 (195)
T TIGR00477        92 NEDYDFIFSTVVFMFLQA--------------------GRVPEIIANMQAHTRPGGYNLIVAAMDTADYP----------  141 (195)
T ss_pred             cCCCCEEEEecccccCCH--------------------HHHHHHHHHHHHHhCCCcEEEEEEecccCCCC----------
Confidence            457999999999999643                    34677888889999999996554321211100          


Q ss_pred             HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          173 KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       173 ~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                                    ...  .|-|..+++|+++.++  + |++.+.+
T Consensus       142 --------------~~~--~~~~~~~~~el~~~f~--~-~~~~~~~  168 (195)
T TIGR00477       142 --------------CHM--PFSFTFKEDELRQYYA--D-WELLKYN  168 (195)
T ss_pred             --------------CCC--CcCccCCHHHHHHHhC--C-CeEEEee
Confidence                          011  2236789999999986  3 8887765

Part of a tellurite-reducing operon tehA and tehB

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.16  E-value=3.8e-05  Score=71.89  Aligned_cols=76  Identities=17%  Similarity=0.292  Sum_probs=54.9

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ++++|+++|+.+||++..                    .++..+|+.-.+-|+|||++++......+..           
T Consensus       182 ~~~fD~I~~~~vl~~l~~--------------------~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~-----------  230 (287)
T PRK12335        182 QEEYDFILSTVVLMFLNR--------------------ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY-----------  230 (287)
T ss_pred             cCCccEEEEcchhhhCCH--------------------HHHHHHHHHHHHhcCCCcEEEEEEecccccC-----------
Confidence            678999999999999643                    3577888888999999999776543222110           


Q ss_pred             HHHHHcCCCchhhhccccCCC-cccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          173 KDMISEGLAEESKVKSFEDFP-IYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       173 ~~mv~eG~i~~e~~d~f~~~P-~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                                     .. ..| -+..+.+|+++.+..   |+|.+.+
T Consensus       231 ---------------~~-~~p~~~~~~~~el~~~~~~---~~i~~~~  258 (287)
T PRK12335        231 ---------------PC-PMPFSFTFKEGELKDYYQD---WEIVKYN  258 (287)
T ss_pred             ---------------CC-CCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence                           01 233 356789999999963   8888774

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.14  E-value=7.1e-06  Score=74.93  Aligned_cols=162  Identities=21%  Similarity=0.230  Sum_probs=62.5

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|-.|+.+..           +   -.|..+|+.-|.-     .=-  |....++.... +  ..++.  -
T Consensus        49 ~~vLDv~~GtG~~~~~l~~-----------~---~~~~~~v~~vD~s-----~~M--L~~a~~k~~~~-~--~~~i~--~  102 (233)
T PF01209_consen   49 DRVLDVACGTGDVTRELAR-----------R---VGPNGKVVGVDIS-----PGM--LEVARKKLKRE-G--LQNIE--F  102 (233)
T ss_dssp             -EEEEET-TTSHHHHHHGG-----------G---SS---EEEEEES------HHH--HHHHHHHHHHT-T----SEE--E
T ss_pred             CEEEEeCCChHHHHHHHHH-----------H---CCCccEEEEecCC-----HHH--HHHHHHHHHhh-C--CCCee--E
Confidence            3799999999987774421           1   1234566666632     111  11111122111 1  12332  2


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-|+.-.==||++|+|.+.+++.||-+.+                      ....|+.-.+=|||||++++.=.+++...
T Consensus       103 v~~da~~lp~~d~sfD~v~~~fglrn~~d----------------------~~~~l~E~~RVLkPGG~l~ile~~~p~~~  160 (233)
T PF01209_consen  103 VQGDAEDLPFPDNSFDAVTCSFGLRNFPD----------------------RERALREMYRVLKPGGRLVILEFSKPRNP  160 (233)
T ss_dssp             EE-BTTB--S-TT-EEEEEEES-GGG-SS----------------------HHHHHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred             EEcCHHHhcCCCCceeEEEHHhhHHhhCC----------------------HHHHHHHHHHHcCCCeEEEEeeccCCCCc
Confidence            33444444489999999999999999544                      45667778899999999998888887642


Q ss_pred             CCCchHHHHHHHHHHH------cCCCchhhhccccCCC---cccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          162 ATPGEPMLMVLKDMIS------EGLAEESKVKSFEDFP---IYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~------eG~i~~e~~d~f~~~P---~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                           .+...+.--..      -++++.+ .+.+..+|   .-+|+++|+.+.++++| |+..+.+
T Consensus       161 -----~~~~~~~~y~~~ilP~~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~  219 (233)
T PF01209_consen  161 -----LLRALYKFYFKYILPLIGRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYR  219 (233)
T ss_dssp             -----HHHHHHHH-----------------------------------------------------
T ss_pred             -----hhhceeeeeecccccccccccccc-cccccccccccccccccccccccccccc-ccccccc
Confidence                 12222111000      1223322 22221222   34789999999999999 7754443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.14  E-value=3.3e-05  Score=65.03  Aligned_cols=145  Identities=18%  Similarity=0.272  Sum_probs=80.6

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCc-eeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGS-CFVA   80 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~-~f~~   80 (300)
                      .+|+|+||++|..++.+..       +.       .|..+++.-|+-..     .  +... ....+..+  ..+ -|..
T Consensus         5 ~~iLDlGcG~G~~~~~l~~-------~~-------~~~~~i~gvD~s~~-----~--i~~a-~~~~~~~~--~~ni~~~~   60 (152)
T PF13847_consen    5 KKILDLGCGTGRLLIQLAK-------EL-------NPGAKIIGVDISEE-----M--IEYA-KKRAKELG--LDNIEFIQ   60 (152)
T ss_dssp             SEEEEET-TTSHHHHHHHH-------HS-------TTTSEEEEEESSHH-----H--HHHH-HHHHHHTT--STTEEEEE
T ss_pred             CEEEEecCcCcHHHHHHHH-------hc-------CCCCEEEEEECcHH-----H--HHHh-hccccccc--ccccceEE
Confidence            5899999999999886654       11       12356777764210     0  0000 00001111  122 2222


Q ss_pred             ecCCcccc--ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           81 ASPGSFYT--RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        81 ~vpgSFy~--~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                         ++..+  +.++ +.+|+++++.++||+..                      ...+|+.-.+-|++||++++......
T Consensus        61 ---~d~~~l~~~~~-~~~D~I~~~~~l~~~~~----------------------~~~~l~~~~~~lk~~G~~i~~~~~~~  114 (152)
T PF13847_consen   61 ---GDIEDLPQELE-EKFDIIISNGVLHHFPD----------------------PEKVLKNIIRLLKPGGILIISDPNHN  114 (152)
T ss_dssp             ---SBTTCGCGCSS-TTEEEEEEESTGGGTSH----------------------HHHHHHHHHHHEEEEEEEEEEEEEHS
T ss_pred             ---eehhccccccC-CCeeEEEEcCchhhccC----------------------HHHHHHHHHHHcCCCcEEEEEECChH
Confidence               34433  1144 89999999999999554                      56777888899999999998887622


Q ss_pred             CCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcC
Q 045960          159 NFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEG  210 (300)
Q Consensus       159 ~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~g  210 (300)
                             +.+...+.++..   +.-+.+...  . ... ..+|+..+++++|
T Consensus       115 -------~~~~~~~~~~~~---~~~~~~~~~--~-~~~-~~~~~~~~~~~ag  152 (152)
T PF13847_consen  115 -------DELPEQLEELMN---LYSEVWSMI--Y-IGN-DKEEWKYILEEAG  152 (152)
T ss_dssp             -------HHHHHHHHHHHH---HHHHHHHHC--C-----CCCGHHHHHHHTT
T ss_pred             -------HHHHHHHHHHHH---HHHHHhhhh--h-ccc-CHHHHHHHHHhcC
Confidence                   122233333322   111111212  1 112 7888888888876

...

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.95  E-value=0.00023  Score=65.66  Aligned_cols=97  Identities=15%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      .+.+..--+|++++|+++|+.++||.   |.                   ....|+.-.+-|+|||++++.-......  
T Consensus       134 ~~d~~~l~~~~~~fD~Vi~~~v~~~~---~d-------------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~--  189 (272)
T PRK11873        134 LGEIEALPVADNSVDVIISNCVINLS---PD-------------------KERVFKEAFRVLKPGGRFAISDVVLRGE--  189 (272)
T ss_pred             EcchhhCCCCCCceeEEEEcCcccCC---CC-------------------HHHHHHHHHHHcCCCcEEEEEEeeccCC--
Confidence            34544433678899999999999994   32                   2345566778899999999864332221  


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      .. +.+...+. +.          ..   ......+.+|+..++++.| |...++..
T Consensus       190 ~~-~~~~~~~~-~~----------~~---~~~~~~~~~e~~~~l~~aG-f~~v~i~~  230 (272)
T PRK11873        190 LP-EEIRNDAE-LY----------AG---CVAGALQEEEYLAMLAEAG-FVDITIQP  230 (272)
T ss_pred             CC-HHHHHhHH-HH----------hc---cccCCCCHHHHHHHHHHCC-CCceEEEe
Confidence            11 22222111 10          01   1113457899999999998 77665543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.90  E-value=1.6e-05  Score=61.79  Aligned_cols=99  Identities=20%  Similarity=0.148  Sum_probs=48.3

Q ss_pred             EeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeecCC
Q 045960            5 ADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASPG   84 (300)
Q Consensus         5 aD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~vpg   84 (300)
                      .|+||++|..+..++...               |..++...|.-.+=-...=+.+.       .....  ..-.......
T Consensus         1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l~~a~~~~~-------~~~~~--~~~~~~~~~~   56 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSMLERARERLA-------ELGND--NFERLRFDVL   56 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTTSTTCCCHH-------HCT-----EEEEE--SS
T ss_pred             CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHhh-------hcCCc--ceeEEEeecC
Confidence            499999999998766543               35777777754332211111111       10000  1112222222


Q ss_pred             ccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCcee
Q 045960           85 SFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRM  150 (300)
Q Consensus        85 SFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~  150 (300)
                      ....... .+++|+|+++.+|||+.                      |+..+|+.-++-|+|||++
T Consensus        57 ~~~~~~~-~~~fD~V~~~~vl~~l~----------------------~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   57 DLFDYDP-PESFDLVVASNVLHHLE----------------------DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S---CCC-----SEEEEE-TTS--S-----------------------HHHHHHHHTTT-TSS-EE
T ss_pred             Chhhccc-ccccceehhhhhHhhhh----------------------hHHHHHHHHHHHcCCCCCC
Confidence            2222222 28999999999999972                      3678888899999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.87  E-value=0.00027  Score=66.49  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=86.6

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+.+.               -|..++..-|+|.     .......   .... .+.. .+  +..+
T Consensus       152 ~vlDiG~G~G~~~~~~~~~---------------~p~~~~~~~D~~~-----~~~~a~~---~~~~-~gl~-~r--v~~~  204 (306)
T TIGR02716       152 KMIDVGGGIGDISAAMLKH---------------FPELDSTILNLPG-----AIDLVNE---NAAE-KGVA-DR--MRGI  204 (306)
T ss_pred             EEEEeCCchhHHHHHHHHH---------------CCCCEEEEEecHH-----HHHHHHH---HHHh-CCcc-ce--EEEE
Confidence            7999999999766544322               2457777778752     1111111   1111 1110 12  3457


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC-C
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF-H  161 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~-~  161 (300)
                      +|+|+..-+|.  .|+++.+..+|-...                    .+-..+|+.-++-|+|||++++.=.-.++. .
T Consensus       205 ~~d~~~~~~~~--~D~v~~~~~lh~~~~--------------------~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~  262 (306)
T TIGR02716       205 AVDIYKESYPE--ADAVLFCRILYSANE--------------------QLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN  262 (306)
T ss_pred             ecCccCCCCCC--CCEEEeEhhhhcCCh--------------------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC
Confidence            88999766675  499998889884222                    123567888889999999998873222221 1


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE  216 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~  216 (300)
                      +.. ..+...   |..-|+.       +  .+..+++.+|+++++++.| |+..+
T Consensus       263 ~~~-~~~~~~---~~~~~~~-------~--~~~~~~~~~e~~~ll~~aG-f~~v~  303 (306)
T TIGR02716       263 PNF-DYLSHY---ILGAGMP-------F--SVLGFKEQARYKEILESLG-YKDVT  303 (306)
T ss_pred             chh-hHHHHH---HHHcccc-------c--ccccCCCHHHHHHHHHHcC-CCeeE
Confidence            111 122222   2112211       1  1123556899999999999 77443

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.79  E-value=0.00052  Score=60.98  Aligned_cols=94  Identities=14%  Similarity=0.184  Sum_probs=57.1

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ++++|+++++.++|+...                      ...+|+.-.+-|+|||.+++....+..   .  ......+
T Consensus       110 ~~~~D~i~~~~~l~~~~~----------------------~~~~l~~~~~~L~~gG~l~i~~~~~~~---~--~~~~~~~  162 (224)
T TIGR01983       110 AKSFDVVTCMEVLEHVPD----------------------PQAFIRACAQLLKPGGILFFSTINRTP---K--SYLLAIV  162 (224)
T ss_pred             CCCccEEEehhHHHhCCC----------------------HHHHHHHHHHhcCCCcEEEEEecCCCc---h--HHHHHHH
Confidence            478999999999999544                      456777788889999998876543211   0  1111111


Q ss_pred             H-HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          173 K-DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       173 ~-~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      . ++. .+.+.    +.- .....+.+.+++.+++++.| |+|.+++.+
T Consensus       163 ~~~~~-~~~~~----~~~-~~~~~~~~~~~l~~~l~~~G-~~i~~~~~~  204 (224)
T TIGR01983       163 GAEYI-LRIVP----KGT-HDWEKFIKPSELTSWLESAG-LRVKDVKGL  204 (224)
T ss_pred             hhhhh-hhcCC----CCc-CChhhcCCHHHHHHHHHHcC-CeeeeeeeE
Confidence            1 010 11111    111 11123458999999999998 998877644

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.77  E-value=0.00021  Score=62.71  Aligned_cols=95  Identities=14%  Similarity=0.230  Sum_probs=57.4

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|+++|+.+|||+..       +.               .+|+.-   ++++|..++.++.....         .
T Consensus        71 ~~~~sfD~Vi~~~~l~~~~d-------~~---------------~~l~e~---~r~~~~~ii~~p~~~~~---------~  116 (194)
T TIGR02081        71 FPDKSFDYVILSQTLQATRN-------PE---------------EILDEM---LRVGRHAIVSFPNFGYW---------R  116 (194)
T ss_pred             cCCCCcCEEEEhhHhHcCcC-------HH---------------HHHHHH---HHhCCeEEEEcCChhHH---------H
Confidence            67899999999999999654       22               222211   33577777777533211         1


Q ss_pred             HHHHHHHcCCCchhh-h--ccccC-CCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          171 VLKDMISEGLAEESK-V--KSFED-FPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       171 al~~mv~eG~i~~e~-~--d~f~~-~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      ....+...|.....+ .  .-+ + .+..+++.+|+.+++++.| |++...+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ll~~~G-f~v~~~~~~~  169 (194)
T TIGR02081       117 VRWSILTKGRMPVTGELPYDWY-NTPNIHFCTIADFEDLCGELN-LRILDRAAFD  169 (194)
T ss_pred             HHHHHHhCCccccCCCCCcccc-CCCCcccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence            111122223222111 1  112 2 2356889999999999999 9999888774

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.75  E-value=0.00013  Score=62.46  Aligned_cols=100  Identities=17%  Similarity=0.100  Sum_probs=61.8

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|++++++++||+.+                      ...+|+.-.+-|||||++++.-.+.++....  ..+ .
T Consensus        40 ~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~--~~~-~   94 (160)
T PLN02232         40 FDDCEFDAVTMGYGLRNVVD----------------------RLRAMKEMYRVLKPGSRVSILDFNKSNQSVT--TFM-Q   94 (160)
T ss_pred             CCCCCeeEEEecchhhcCCC----------------------HHHHHHHHHHHcCcCeEEEEEECCCCChHHH--HHH-H
Confidence            67889999999999999643                      5677888899999999999886665442110  000 0


Q ss_pred             HHH---HHHHcCCCchhhhccccCCC---cccCCHHHHHHHHHhcCCeeEEEE
Q 045960          171 VLK---DMISEGLAEESKVKSFEDFP---IYRASVDEVKQIVKKEGSFDIQEV  217 (300)
Q Consensus       171 al~---~mv~eG~i~~e~~d~f~~~P---~y~~s~eE~~~~i~~~gsF~I~~~  217 (300)
                      .|.   -+..-|.+... .+.+..+|   ..+++++|+.+++++.| |+..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~  145 (160)
T PLN02232         95 GWMIDNVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH  145 (160)
T ss_pred             HHHccchHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence            000   01111111111 12221122   24689999999999999 774443

>PRK06922 hypothetical protein; Provisional

Probab=97.74  E-value=9.9e-05  Score=76.26  Aligned_cols=54  Identities=26%  Similarity=0.244  Sum_probs=40.9

Q ss_pred             cCCCCcccEEEeccccccc-cCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           90 LFPHNFLDFVYSSYALHWL-SRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWL-S~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      .||++++|++++++++||+ +.+|..-.       +|   -.+|...+|+.-.+-|||||++++.
T Consensus       482 ~fedeSFDvVVsn~vLH~L~syIp~~g~-------~f---~~edl~kiLreI~RVLKPGGrLII~  536 (677)
T PRK06922        482 SFEKESVDTIVYSSILHELFSYIEYEGK-------KF---NHEVIKKGLQSAYEVLKPGGRIIIR  536 (677)
T ss_pred             ccCCCCEEEEEEchHHHhhhhhcccccc-------cc---cHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            4789999999999999975 45552100       00   1357888999999999999999885

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.70  E-value=0.00026  Score=70.58  Aligned_cols=76  Identities=16%  Similarity=0.192  Sum_probs=53.9

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|+|+|+.++||++.                    .++..+|+.-++-|+|||+|++.=..-.            
T Consensus        99 ~~~~~fD~I~~~~~l~~l~~--------------------~~~~~~l~~~~r~Lk~gG~l~~~d~~~~------------  146 (475)
T PLN02336         99 ISDGSVDLIFSNWLLMYLSD--------------------KEVENLAERMVKWLKVGGYIFFRESCFH------------  146 (475)
T ss_pred             CCCCCEEEEehhhhHHhCCH--------------------HHHHHHHHHHHHhcCCCeEEEEEeccCC------------
Confidence            68899999999999999754                    2467888888999999999977421100            


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcC
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEG  210 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~g  210 (300)
                            ..|     .+..- .-|..+++..++..++.++|
T Consensus       147 ------~~~-----~~~~~-~~~~~~~~~~~~~~~f~~~~  174 (475)
T PLN02336        147 ------QSG-----DSKRK-NNPTHYREPRFYTKVFKECH  174 (475)
T ss_pred             ------CCC-----ccccc-CCCCeecChHHHHHHHHHhe
Confidence                  001     01112 34556688999999998876

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.69  E-value=0.00057  Score=59.96  Aligned_cols=130  Identities=16%  Similarity=0.176  Sum_probs=72.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...               .|..+|+.-|.-.+=-. ..+      ... ...+  ..++  .-
T Consensus        44 ~~vLDiGcGtG~~s~~la~~---------------~~~~~V~~iD~s~~~~~-~a~------~~~-~~~~--~~~i--~~   96 (181)
T TIGR00138        44 KKVIDIGSGAGFPGIPLAIA---------------RPELKLTLLESNHKKVA-FLR------EVK-AELG--LNNV--EI   96 (181)
T ss_pred             CeEEEecCCCCccHHHHHHH---------------CCCCeEEEEeCcHHHHH-HHH------HHH-HHhC--CCCe--EE
Confidence            37999999999888865310               12345666664332100 110      001 1111  1232  22


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-|+..+ +.+.+++|+++|.. +|+                         +..+++.-.+=|+|||++++... .... 
T Consensus        97 i~~d~~~-~~~~~~fD~I~s~~-~~~-------------------------~~~~~~~~~~~LkpgG~lvi~~~-~~~~-  147 (181)
T TIGR00138        97 VNGRAED-FQHEEQFDVITSRA-LAS-------------------------LNVLLELTLNLLKVGGYFLAYKG-KKYL-  147 (181)
T ss_pred             Eecchhh-ccccCCccEEEehh-hhC-------------------------HHHHHHHHHHhcCCCCEEEEEcC-CCcH-
Confidence            3344433 44578999999976 544                         12233444566999999998752 1111 


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCC
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFP  193 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P  193 (300)
                          .-+..+.+.|..+|+ ..-+.+++ ..|
T Consensus       148 ----~~~~~~~e~~~~~~~-~~~~~~~~-~~~  173 (181)
T TIGR00138       148 ----DEIEEAKRKCQVLGV-EPLEVPPL-TGP  173 (181)
T ss_pred             ----HHHHHHHHhhhhcCc-eEeecccc-CCC
Confidence                445566677777884 55567788 787

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.67  E-value=0.0013  Score=58.56  Aligned_cols=31  Identities=16%  Similarity=0.351  Sum_probs=25.2

Q ss_pred             CCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          191 DFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       191 ~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                      ..+.+..+.+|+.+.++..| |++.+.+.+..
T Consensus       187 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~  217 (230)
T PRK07580        187 TTRIYPHREKGIRRALAAAG-FKVVRTERISS  217 (230)
T ss_pred             CCCccccCHHHHHHHHHHCC-CceEeeeeccc
Confidence            34567789999999999999 99888876643

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.66  E-value=0.0002  Score=66.41  Aligned_cols=42  Identities=21%  Similarity=0.344  Sum_probs=34.5

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      +|.+++|+|+|.++|||++.                    .+...+|+.-++-|+|||.|++
T Consensus       199 ~~~~~fD~I~crnvl~yf~~--------------------~~~~~~l~~l~~~L~pGG~L~l  240 (264)
T smart00138      199 PPLGDFDLIFCRNVLIYFDE--------------------PTQRKLLNRFAEALKPGGYLFL  240 (264)
T ss_pred             CccCCCCEEEechhHHhCCH--------------------HHHHHHHHHHHHHhCCCeEEEE
Confidence            46889999999999999653                    2345677788899999999876

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.63  E-value=0.00036  Score=62.03  Aligned_cols=74  Identities=19%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchH
Q 045960           88 TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEP  167 (300)
Q Consensus        88 ~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~  167 (300)
                      .+.+|++++|.++++++.+|...... .             -..+...||+.-++-|+|||++++.....        +.
T Consensus       104 ~~~~~~~~~D~V~~~~~~p~~~~~~~-~-------------~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~  161 (202)
T PRK00121        104 LDMFPDGSLDRIYLNFPDPWPKKRHH-K-------------RRLVQPEFLALYARKLKPGGEIHFATDWE--------GY  161 (202)
T ss_pred             HHHcCccccceEEEECCCCCCCcccc-c-------------cccCCHHHHHHHHHHcCCCCEEEEEcCCH--------HH
Confidence            45588899999999999888653110 0             01124678888899999999999876322        45


Q ss_pred             HHHHHHHHHHcCCCch
Q 045960          168 MLMVLKDMISEGLAEE  183 (300)
Q Consensus       168 l~~al~~mv~eG~i~~  183 (300)
                      +...+..|...|+-.+
T Consensus       162 ~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        162 AEYMLEVLSAEGGFLV  177 (202)
T ss_pred             HHHHHHHHHhCccccc
Confidence            6677888878886444

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.60  E-value=0.0012  Score=58.90  Aligned_cols=30  Identities=10%  Similarity=0.224  Sum_probs=25.6

Q ss_pred             CCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          191 DFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       191 ~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      ..++++++++|+.+++++.| |++.+.+...
T Consensus       179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~  208 (219)
T TIGR02021       179 ATSAYLHPMTDLERALGELG-WKIVREGLVS  208 (219)
T ss_pred             ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence            35678899999999999999 9998887654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.57  E-value=0.00052  Score=61.06  Aligned_cols=75  Identities=15%  Similarity=0.216  Sum_probs=47.0

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      ...|+++|..++|.|..                    ..+..+++...+.++|||.+++...-..+.-+           
T Consensus        93 ~~yD~I~st~v~~fL~~--------------------~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p-----------  141 (192)
T PF03848_consen   93 EEYDFIVSTVVFMFLQR--------------------ELRPQIIENMKAATKPGGYNLIVTFMETPDYP-----------  141 (192)
T ss_dssp             TTEEEEEEESSGGGS-G--------------------GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS------------
T ss_pred             CCcCEEEEEEEeccCCH--------------------HHHHHHHHHHHhhcCCcEEEEEEEecccCCCC-----------
Confidence            56799999999999765                    12456677788999999998875432221111           


Q ss_pred             HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEE
Q 045960          174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV  217 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~  217 (300)
                                   ... ++| +...+.|++....  | |+|.+.
T Consensus       142 -------------~~~-~~~-f~~~~~EL~~~y~--d-W~il~y  167 (192)
T PF03848_consen  142 -------------CPS-PFP-FLLKPGELREYYA--D-WEILKY  167 (192)
T ss_dssp             --------------SS---S---B-TTHHHHHTT--T-SEEEEE
T ss_pred             -------------CCC-CCC-cccCHHHHHHHhC--C-CeEEEE
Confidence                         011 333 3458889999886  3 888775

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.55  E-value=0.00076  Score=60.57  Aligned_cols=94  Identities=14%  Similarity=0.174  Sum_probs=58.3

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV  171 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a  171 (300)
                      +.+.+|+++++..+++...                      ...+|+...+-|+|||++++...++...     ......
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~----------------------~~~~l~~~~~~L~~gG~l~v~~~~~~~~-----~~~~~~  163 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPD----------------------PASFVRACAKLVKPGGLVFFSTLNRNLK-----SYLLAI  163 (233)
T ss_pred             cCCCccEEEEhhHhhccCC----------------------HHHHHHHHHHHcCCCcEEEEEecCCChH-----HHHHHH
Confidence            5578999999999998433                      3456777888899999999876543211     001111


Q ss_pred             H-HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          172 L-KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       172 l-~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      + .+.+..+. .    ... .-...+.+++|+.+++++.| |++.+...
T Consensus       164 ~~~~~~~~~~-~----~~~-~~~~~~~~~~~~~~~l~~~G-f~~v~~~~  205 (233)
T PRK05134        164 VGAEYVLRML-P----KGT-HDYKKFIKPSELAAWLRQAG-LEVQDITG  205 (233)
T ss_pred             hhHHHHhhhc-C----ccc-CchhhcCCHHHHHHHHHHCC-CeEeeeee
Confidence            1 11111111 1    011 11224568999999999999 88877653

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.53  E-value=0.0023  Score=58.77  Aligned_cols=46  Identities=30%  Similarity=0.633  Sum_probs=39.8

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF  160 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~  160 (300)
                      +++|||+|.+.-|+||                 |      |+.+|.+.-.+-||+.|.+++...-+.+-
T Consensus        97 ~e~SVDlI~~Aqa~HW-----------------F------dle~fy~~~~rvLRk~Gg~iavW~Y~dd~  142 (261)
T KOG3010|consen   97 GEESVDLITAAQAVHW-----------------F------DLERFYKEAYRVLRKDGGLIAVWNYNDDF  142 (261)
T ss_pred             CCcceeeehhhhhHHh-----------------h------chHHHHHHHHHHcCCCCCEEEEEEccCCC
Confidence            4999999999999999                 2      68999999999999999888887766543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.50  E-value=0.0015  Score=61.95  Aligned_cols=148  Identities=23%  Similarity=0.266  Sum_probs=97.1

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||..|.-++.+..            .|   + =.|+--| |+=.|..=|+.+..+.       +.+ ..+|..  
T Consensus       118 ~VLDIGC~nGY~~frM~~------------~G---A-~~ViGiD-P~~lf~~QF~~i~~~l-------g~~-~~~~~l--  170 (315)
T PF08003_consen  118 RVLDIGCNNGYYSFRMLG------------RG---A-KSVIGID-PSPLFYLQFEAIKHFL-------GQD-PPVFEL--  170 (315)
T ss_pred             EEEEecCCCcHHHHHHhh------------cC---C-CEEEEEC-CChHHHHHHHHHHHHh-------CCC-ccEEEc--
Confidence            799999999998875431            12   2 2455555 6666666666555442       111 233433  


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      |-.. +.|=+.+.+|.|||.-.|=-++.                      =...|+.-..-|+|||.|||..+..+....
T Consensus       171 plgv-E~Lp~~~~FDtVF~MGVLYHrr~----------------------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~  227 (315)
T PF08003_consen  171 PLGV-EDLPNLGAFDTVFSMGVLYHRRS----------------------PLDHLKQLKDSLRPGGELVLETLVIDGDEN  227 (315)
T ss_pred             Ccch-hhccccCCcCEEEEeeehhccCC----------------------HHHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence            2222 23333678999999999877655                      234455566789999999999876554332


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV  217 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~  217 (300)
                      .               -++.++.+..| .-=|+-||..-++.+++..| |+-.++
T Consensus       228 ~---------------~L~P~~rYa~m-~nv~FiPs~~~L~~wl~r~g-F~~v~~  265 (315)
T PF08003_consen  228 T---------------VLVPEDRYAKM-RNVWFIPSVAALKNWLERAG-FKDVRC  265 (315)
T ss_pred             e---------------EEccCCcccCC-CceEEeCCHHHHHHHHHHcC-CceEEE
Confidence            2               25666667777 66678899999999999999 764443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.47  E-value=0.01  Score=55.89  Aligned_cols=71  Identities=23%  Similarity=0.367  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCc-ccCCHHHHHHHHHhc
Q 045960          131 SDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPI-YRASVDEVKQIVKKE  209 (300)
Q Consensus       131 ~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~-y~~s~eE~~~~i~~~  209 (300)
                      +.+..|++.-.+-|+|||+|++...+.......               +  ...-++.+ .+|= +.||..++....++.
T Consensus       153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---------------~--~~~~i~~y-iFPgG~lPs~~~i~~~~~~~  214 (283)
T COG2230         153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---------------R--FPDFIDKY-IFPGGELPSISEILELASEA  214 (283)
T ss_pred             ccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---------------c--chHHHHHh-CCCCCcCCCHHHHHHHHHhc
Confidence            447889999999999999999999888764320               0  01112333 3443 568999999999999


Q ss_pred             CCeeEEEEEEE
Q 045960          210 GSFDIQEVETF  220 (300)
Q Consensus       210 gsF~I~~~e~~  220 (300)
                      | |.+...+.+
T Consensus       215 ~-~~v~~~~~~  224 (283)
T COG2230         215 G-FVVLDVESL  224 (283)
T ss_pred             C-cEEehHhhh
Confidence            8 777665544

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.28  E-value=0.0013  Score=58.76  Aligned_cols=89  Identities=21%  Similarity=0.287  Sum_probs=62.4

Q ss_pred             EEEeeCCCCCcccHHHH------------HHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhc
Q 045960            3 RFADLGCSSGPNALLPT------------WEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEK   70 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~------------~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~   70 (300)
                      ++.|+|||.|-.|..+.            ...|+.-++++.    ..|.+++..-|+|                      
T Consensus        46 ~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp----------------------   99 (201)
T PF05401_consen   46 RALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVP----------------------   99 (201)
T ss_dssp             EEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TT----------------------
T ss_pred             eeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCC----------------------
Confidence            57899999999998654            566666666542    2355766666643                      


Q ss_pred             CCCCCceeeeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCcee
Q 045960           71 GHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRM  150 (300)
Q Consensus        71 ~~~~~~~f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~  150 (300)
                                   .     ..|...+|+++-|-.+++|+.                   ..|+..++..-.+-|+|||.|
T Consensus       100 -------------~-----~~P~~~FDLIV~SEVlYYL~~-------------------~~~L~~~l~~l~~~L~pgG~L  142 (201)
T PF05401_consen  100 -------------E-----FWPEGRFDLIVLSEVLYYLDD-------------------AEDLRAALDRLVAALAPGGHL  142 (201)
T ss_dssp             -------------T--------SS-EEEEEEES-GGGSSS-------------------HHHHHHHHHHHHHTEEEEEEE
T ss_pred             -------------C-----CCCCCCeeEEEEehHhHcCCC-------------------HHHHHHHHHHHHHHhCCCCEE
Confidence                         2     247889999999999999987                   567889999999999999999


Q ss_pred             EEEE
Q 045960          151 VLTL  154 (300)
Q Consensus       151 vl~~  154 (300)
                      |+.-
T Consensus       143 V~g~  146 (201)
T PF05401_consen  143 VFGH  146 (201)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8844

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.28  E-value=0.0024  Score=57.21  Aligned_cols=55  Identities=16%  Similarity=0.150  Sum_probs=38.1

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +++.++|+++|+.+.||... |       .+..+  .+ .......|+.-.+-|+|||++++....
T Consensus       113 ~~~~~~D~V~S~~~~~~~g~-~-------~~d~~--~~-~~~~~~~L~~~~~~LkpGG~~vi~~~~  167 (209)
T PRK11188        113 VGDSKVQVVMSDMAPNMSGT-P-------AVDIP--RA-MYLVELALDMCRDVLAPGGSFVVKVFQ  167 (209)
T ss_pred             hCCCCCCEEecCCCCccCCC-h-------HHHHH--HH-HHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            57789999999999999432 1       11110  01 112467888899999999999996543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.17  E-value=0.00023  Score=64.94  Aligned_cols=92  Identities=23%  Similarity=0.452  Sum_probs=63.7

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      |-.||+|+++||.++||..++|.                     .+.+ -...|||.|.++..|+|-+.--.   =-.+-
T Consensus       133 f~ens~DLiisSlslHW~NdLPg---------------------~m~~-ck~~lKPDg~FiasmlggdTLyE---LR~sl  187 (325)
T KOG2940|consen  133 FKENSVDLIISSLSLHWTNDLPG---------------------SMIQ-CKLALKPDGLFIASMLGGDTLYE---LRCSL  187 (325)
T ss_pred             ccccchhhhhhhhhhhhhccCch---------------------HHHH-HHHhcCCCccchhHHhccccHHH---HHHHh
Confidence            77899999999999999999884                     1222 34679999999999987653211   11344


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE  216 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~  216 (300)
                      -|.+|-.+|=|+.-      .-|+  -...++-.++..+| |....
T Consensus       188 qLAelER~GGiSph------iSPf--~qvrDiG~LL~rAG-F~m~t  224 (325)
T KOG2940|consen  188 QLAELEREGGISPH------ISPF--TQVRDIGNLLTRAG-FSMLT  224 (325)
T ss_pred             hHHHHHhccCCCCC------cChh--hhhhhhhhHHhhcC-cccce
Confidence            56777788765532      2332  24667778888888 66443

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.12  E-value=0.0069  Score=53.34  Aligned_cols=111  Identities=17%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...               .|+.+|+.-|.-.   ..+    ......... .+  ..++-+  +
T Consensus        19 ~ilDiGcG~G~~~~~la~~---------------~p~~~v~gvD~~~---~~l----~~a~~~~~~-~~--l~ni~~--i   71 (194)
T TIGR00091        19 LHLEIGCGKGRFLIDMAKQ---------------NPDKNFLGIEIHT---PIV----LAANNKANK-LG--LKNLHV--L   71 (194)
T ss_pred             eEEEeCCCccHHHHHHHHh---------------CCCCCEEEEEeeH---HHH----HHHHHHHHH-hC--CCCEEE--E
Confidence            6999999999887754432               1345556555421   001    000011111 11  123322  3


Q ss_pred             CCccc---cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFY---TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy---~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -|+..   ..++|++++|.++.++..+|-.+ +.. .+            .-....||+.-++-|||||.+++..
T Consensus        72 ~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~-~~------------r~~~~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        72 CGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RHN-KR------------RITQPHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             ccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Ccc-cc------------ccCCHHHHHHHHHHhCCCCEEEEEe
Confidence            33332   34578889999999999999543 100 00            0001467888889999999998876

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03438 probable methyltransferase

Probab=97.06  E-value=0.0019  Score=61.03  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=67.3

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|+|+||++|.-|..+++....              ..+|+--|+... +      |....+.+...    .+.+=+.+
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~--------------~~~~~~iDiS~~-m------L~~a~~~l~~~----~p~~~v~~  119 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQ--------------PARYVPIDISAD-A------LKESAAALAAD----YPQLEVHG  119 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhcc--------------CCeEEEEECCHH-H------HHHHHHHHHhh----CCCceEEE
Confidence            47999999999988877665321              144555554321 1      00001111111    12333445


Q ss_pred             cCCcccccc-CCCC----cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           82 SPGSFYTRL-FPHN----FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        82 vpgSFy~~l-~P~~----sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +-|.|...+ +|..    ...++++.+++|+++.                    .|...||+.-++-|+|||+|++.+-.
T Consensus       120 i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~--------------------~e~~~~L~~i~~~L~pgG~~lig~d~  179 (301)
T TIGR03438       120 ICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP--------------------EEAVAFLRRIRQLLGPGGGLLIGVDL  179 (301)
T ss_pred             EEEcccchhhhhcccccCCeEEEEecccccCCCH--------------------HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence            666776532 3333    4567788889999653                    34678999999999999999987744


Q ss_pred             cC
Q 045960          157 ND  158 (300)
Q Consensus       157 ~~  158 (300)
                      ..
T Consensus       180 ~~  181 (301)
T TIGR03438       180 VK  181 (301)
T ss_pred             CC
Confidence            43

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.05  E-value=0.0024  Score=61.63  Aligned_cols=105  Identities=16%  Similarity=0.242  Sum_probs=63.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||+.|..++.+.        +.       .|..+|...|.-.   ..|    ......... .+-  ..   ..+
T Consensus       199 ~VLDlGCG~G~ls~~la--------~~-------~p~~~v~~vDis~---~Al----~~A~~nl~~-n~l--~~---~~~  250 (342)
T PRK09489        199 KVLDVGCGAGVLSAVLA--------RH-------SPKIRLTLSDVSA---AAL----ESSRATLAA-NGL--EG---EVF  250 (342)
T ss_pred             eEEEeccCcCHHHHHHH--------Hh-------CCCCEEEEEECCH---HHH----HHHHHHHHH-cCC--CC---EEE
Confidence            69999999998665322        11       2456788887531   111    111111211 111  11   113


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ++..+..  .++.+|+++|+-.+||.-..                 ...+...|++.-++-|+|||.+++..
T Consensus       251 ~~D~~~~--~~~~fDlIvsNPPFH~g~~~-----------------~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        251 ASNVFSD--IKGRFDMIISNPPFHDGIQT-----------------SLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             Ecccccc--cCCCccEEEECCCccCCccc-----------------cHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            3444443  35789999999999983321                 12346788888899999999998765

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.04  E-value=0.00034  Score=54.75  Aligned_cols=100  Identities=25%  Similarity=0.319  Sum_probs=54.5

Q ss_pred             EEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeecC
Q 045960            4 FADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAASP   83 (300)
Q Consensus         4 iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~vp   83 (300)
                      |.|+||++|.++..+.... +           ..|+.++..-|+-.+=....-+.       . ...+  .+--|+.+=.
T Consensus         1 ILDlgcG~G~~~~~l~~~~-~-----------~~~~~~~~gvD~s~~~l~~~~~~-------~-~~~~--~~~~~~~~D~   58 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRF-D-----------AGPSSRVIGVDISPEMLELAKKR-------F-SEDG--PKVRFVQADA   58 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-HHHHHHHHHH-------S-HHTT--TTSEEEESCT
T ss_pred             CEEeecCCcHHHHHHHHHh-h-----------hcccceEEEEECCHHHHHHHHHh-------c-hhcC--CceEEEECCH
Confidence            7899999999998776652 1           11346666666422111110000       0 0001  1112322222


Q ss_pred             CccccccCCCCcccEEEeccc-cccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCc
Q 045960           84 GSFYTRLFPHNFLDFVYSSYA-LHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQG  148 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~a-lHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG  148 (300)
                      .. .  -++.+++|+++++.+ +|++++                    +++..+|+.-++=|+|||
T Consensus        59 ~~-l--~~~~~~~D~v~~~~~~~~~~~~--------------------~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   59 RD-L--PFSDGKFDLVVCSGLSLHHLSP--------------------EELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TC-H--HHHSSSEEEEEE-TTGGGGSSH--------------------HHHHHHHHHHHHTEEEEE
T ss_pred             hH-C--cccCCCeeEEEEcCCccCCCCH--------------------HHHHHHHHHHHHHhCCCC
Confidence            22 1  246779999999766 998665                    457888999999999998

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.02  E-value=0.0035  Score=61.29  Aligned_cols=110  Identities=14%  Similarity=0.135  Sum_probs=63.5

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|.-++.+.        +.       .|..+|+..|...       ..+................+  +..+
T Consensus       231 ~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~-------~Av~~A~~N~~~n~~~~~~~--v~~~  286 (378)
T PRK15001        231 EIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESP-------MAVASSRLNVETNMPEALDR--CEFM  286 (378)
T ss_pred             eEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCH-------HHHHHHHHHHHHcCcccCce--EEEE
Confidence            69999999998655322        21       2568899988632       11111111221111100011  1223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      .+..+..+ +..++|+|+|+--+|+.-.++.      .           ....+++.=.+-|+|||.+++..
T Consensus       287 ~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~------~-----------ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        287 INNALSGV-EPFRFNAVLCNPPFHQQHALTD------N-----------VAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             EccccccC-CCCCEEEEEECcCcccCccCCH------H-----------HHHHHHHHHHHhcccCCEEEEEE
Confidence            34455543 6678999999999998644331      1           12346666677899999998884

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=96.97  E-value=0.0047  Score=57.30  Aligned_cols=167  Identities=11%  Similarity=0.093  Sum_probs=90.2

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      +++.|.+|++|-.++.++..+-..-       ++.  +=+|.-.|     +|.=--..-  .++-.+ .+-+..+++.- 
T Consensus       102 m~~lDvaGGTGDiaFril~~v~s~~-------~~~--~~~V~v~D-----inp~mL~vg--kqRa~~-~~l~~~~~~~w-  163 (296)
T KOG1540|consen  102 MKVLDVAGGTGDIAFRILRHVKSQF-------GDR--ESKVTVLD-----INPHMLAVG--KQRAKK-RPLKASSRVEW-  163 (296)
T ss_pred             CeEEEecCCcchhHHHHHHhhcccc-------CCC--CceEEEEe-----CCHHHHHHH--HHHHhh-cCCCcCCceEE-
Confidence            5799999999999998766543322       222  23444444     332111110  011000 01111111221 


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.|.=-.==||++|+|...+++.+--.-+++      ..+.+|                ++-|||||++.|.-...-+..
T Consensus       164 ~~~dAE~LpFdd~s~D~yTiafGIRN~th~~------k~l~EA----------------YRVLKpGGrf~cLeFskv~~~  221 (296)
T KOG1540|consen  164 VEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ------KALREA----------------YRVLKPGGRFSCLEFSKVENE  221 (296)
T ss_pred             EeCCcccCCCCCCcceeEEEecceecCCCHH------HHHHHH----------------HHhcCCCcEEEEEEccccccH
Confidence            2223232239999999999999988644421      234444                578999999998777665532


Q ss_pred             CCC----c------hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960          162 ATP----G------EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE  216 (300)
Q Consensus       162 ~~~----~------~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~  216 (300)
                      +..    +      -.+...+....+.+..=-|-+.       -+|+.||+..+|+++| |....
T Consensus       222 ~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~-------rfp~qe~f~~miedaG-F~~~~  278 (296)
T KOG1540|consen  222 PLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR-------RFPPQEEFASMIEDAG-FSSVN  278 (296)
T ss_pred             HHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh-------cCCCHHHHHHHHHHcC-Ccccc
Confidence            211    0      2233333333333322222222       2588999999999999 77654

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.96  E-value=0.021  Score=51.65  Aligned_cols=80  Identities=24%  Similarity=0.266  Sum_probs=55.3

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      ..+|+++-..++|=   +|.                 .+...+++.-.+-|+|||+.++.........            
T Consensus       115 ~~fd~v~D~~~~~~---l~~-----------------~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~------------  162 (218)
T PRK13255        115 ADVDAVYDRAALIA---LPE-----------------EMRERYVQQLAALLPAGCRGLLVTLDYPQEE------------  162 (218)
T ss_pred             CCeeEEEehHhHhh---CCH-----------------HHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc------------
Confidence            36899999999995   442                 3456778888899999997555544433210            


Q ss_pred             HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                                     . .-|-|..+++|+++.+.  +.|.|+.++....+
T Consensus       163 ---------------~-~gPp~~~~~~el~~~~~--~~~~i~~~~~~~~~  194 (218)
T PRK13255        163 ---------------L-AGPPFSVSDEEVEALYA--GCFEIELLERQDVL  194 (218)
T ss_pred             ---------------C-CCCCCCCCHHHHHHHhc--CCceEEEeeecccc
Confidence                           1 22446889999999995  33899888766543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.91  E-value=0.026  Score=53.94  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=23.2

Q ss_pred             cccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          194 IYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       194 ~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      .|+.+.+|++.++++.| |+|.+.+...
T Consensus       275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~  301 (315)
T PLN02585        275 AYLHAEADVERALKKAG-WKVARREMTA  301 (315)
T ss_pred             eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence            46779999999999999 9998877664

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.90  E-value=0.0071  Score=53.45  Aligned_cols=99  Identities=20%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...               .|..+|+.-|.-.. .-...+      +...+ .+  ..+  +.-
T Consensus        47 ~~VLDiGcGtG~~al~la~~---------------~~~~~V~giD~s~~-~l~~A~------~~~~~-~~--l~~--i~~   99 (187)
T PRK00107         47 ERVLDVGSGAGFPGIPLAIA---------------RPELKVTLVDSLGK-KIAFLR------EVAAE-LG--LKN--VTV   99 (187)
T ss_pred             CeEEEEcCCCCHHHHHHHHH---------------CCCCeEEEEeCcHH-HHHHHH------HHHHH-cC--CCC--EEE
Confidence            37999999999888765431               12345666553210 001110      01111 11  122  222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +.++..+ +-+.+++|+++|... .                         ++..|++..++-|+|||++++..
T Consensus       100 ~~~d~~~-~~~~~~fDlV~~~~~-~-------------------------~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        100 VHGRAEE-FGQEEKFDVVTSRAV-A-------------------------SLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EeccHhh-CCCCCCccEEEEccc-c-------------------------CHHHHHHHHHHhcCCCeEEEEEe
Confidence            3343333 223678999998641 1                         24668888899999999999875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.87  E-value=0.0051  Score=48.84  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=28.5

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      .++|++++..+.++                         +..+++.-.+.|+|||++++++
T Consensus        87 ~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        87 PEPDRVFIGGSGGL-------------------------LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CCCCEEEECCcchh-------------------------HHHHHHHHHHHcCCCCEEEEEe
Confidence            58999988654332                         3578888999999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.83  E-value=0.0088  Score=51.69  Aligned_cols=71  Identities=15%  Similarity=0.046  Sum_probs=42.1

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHH--HhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFL--NQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~--~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      +-++.+..+  .+++|+++|+..+|.....+..   .+...-++.  ..-...+..||+.-.+-|+|||++++...+.
T Consensus        71 ~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~  143 (179)
T TIGR00537        71 VMTDLFKGV--RGKFDVILFNPPYLPLEDDLRR---GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL  143 (179)
T ss_pred             EEccccccc--CCcccEEEECCCCCCCcchhcc---cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence            445665533  4589999999988875432210   000000100  0011226778888889999999998876544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.79  E-value=0.017  Score=51.97  Aligned_cols=80  Identities=23%  Similarity=0.242  Sum_probs=56.1

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      ..+|.++-..++|=   +|.                 .+...+++.-.+-|+|||++++.....+...            
T Consensus       112 ~~fD~i~D~~~~~~---l~~-----------------~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~------------  159 (213)
T TIGR03840       112 GPVDAVYDRAALIA---LPE-----------------EMRQRYAAHLLALLPPGARQLLITLDYDQSE------------  159 (213)
T ss_pred             CCcCEEEechhhcc---CCH-----------------HHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC------------
Confidence            46899999999884   552                 2356678888999999998777665443210            


Q ss_pred             HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                                     . .-|-|..+++|+++.+..  .|+|+.++....+
T Consensus       160 ---------------~-~gpp~~~~~~eL~~~f~~--~~~i~~~~~~~~~  191 (213)
T TIGR03840       160 ---------------M-AGPPFSVSPAEVEALYGG--HYEIELLESRDVL  191 (213)
T ss_pred             ---------------C-CCcCCCCCHHHHHHHhcC--CceEEEEeecccc
Confidence                           1 224477899999998863  3888888766543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.75  E-value=0.0054  Score=45.47  Aligned_cols=102  Identities=26%  Similarity=0.247  Sum_probs=59.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||+.|.++..+..                .+..+++..|+..+-....-+..        ....  ..++-+  +
T Consensus         1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~--------~~~~--~~~~~~--~   52 (107)
T cd02440           1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAA--------AALL--ADNVEV--L   52 (107)
T ss_pred             CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHH--------hccc--ccceEE--E
Confidence            589999999987765533                11256666675443222221100        0000  011111  1


Q ss_pred             CCcccccc-CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           83 PGSFYTRL-FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        83 pgSFy~~l-~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      -+++.... .+..++|+++++..+|+.                     ..+...+++.-.+-|+|||.+++.
T Consensus        53 ~~~~~~~~~~~~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          53 KGDAEELPPEADESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EcChhhhccccCCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            23333333 366789999999999984                     123566777777778999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.70  E-value=0.0081  Score=54.36  Aligned_cols=100  Identities=26%  Similarity=0.409  Sum_probs=68.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+|+++|..++.++        +.       -|.+++..=|||..     .   +....      .   .+|  .-+
T Consensus       103 ~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~v-----~---~~~~~------~---~rv--~~~  148 (241)
T PF00891_consen  103 TVVDVGGGSGHFAIALA--------RA-------YPNLRATVFDLPEV-----I---EQAKE------A---DRV--EFV  148 (241)
T ss_dssp             EEEEET-TTSHHHHHHH--------HH-------STTSEEEEEE-HHH-----H---CCHHH------T---TTE--EEE
T ss_pred             EEEeccCcchHHHHHHH--------HH-------CCCCcceeeccHhh-----h---hcccc------c---ccc--ccc
Confidence            69999999998776432        22       35788999998853     1   11111      0   223  338


Q ss_pred             CCccccccCCCCcccEEEeccccc-cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccC--ceeEEEEeecCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALH-WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQ--GRMVLTLLYNDN  159 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alH-WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~G--G~~vl~~~g~~~  159 (300)
                      ||.|+ .=+|.  .|+++-...|| | +                    .++-..+|+.-++.|+||  |++++.=.-.++
T Consensus       149 ~gd~f-~~~P~--~D~~~l~~vLh~~-~--------------------d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~  204 (241)
T PF00891_consen  149 PGDFF-DPLPV--ADVYLLRHVLHDW-S--------------------DEDCVKILRNAAAALKPGKDGRLLIIEMVLPD  204 (241)
T ss_dssp             ES-TT-TCCSS--ESEEEEESSGGGS----------------------HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred             cccHH-hhhcc--ccceeeehhhhhc-c--------------------hHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence            99999 77888  99999999998 6 2                    235578899999999999  999887655544


Q ss_pred             C
Q 045960          160 F  160 (300)
Q Consensus       160 ~  160 (300)
                      .
T Consensus       205 ~  205 (241)
T PF00891_consen  205 D  205 (241)
T ss_dssp             S
T ss_pred             C
Confidence            3

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.67  E-value=0.0067  Score=53.87  Aligned_cols=46  Identities=20%  Similarity=0.139  Sum_probs=31.8

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +.|.+.+.+-+.+++|++++..+++++   |.                         .-.+-|+|||++++.+.
T Consensus       131 ~~~d~~~~~~~~~~fD~I~~~~~~~~~---~~-------------------------~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        131 RHGDGWKGWPAYAPFDRILVTAAAPEI---PR-------------------------ALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EECCcccCCCcCCCcCEEEEccCchhh---hH-------------------------HHHHhcCCCcEEEEEEc
Confidence            445554444445789999999888773   31                         01356999999998875

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.67  E-value=0.0062  Score=52.52  Aligned_cols=108  Identities=20%  Similarity=0.272  Sum_probs=63.7

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|.-++.+..               ..|...|...|.-.+=-...=+       .... .+  ..+  +..+
T Consensus        34 ~vLDlG~G~G~i~~~la~---------------~~~~~~v~~vDi~~~a~~~a~~-------n~~~-n~--~~~--v~~~   86 (170)
T PF05175_consen   34 RVLDLGCGSGVISLALAK---------------RGPDAKVTAVDINPDALELAKR-------NAER-NG--LEN--VEVV   86 (170)
T ss_dssp             EEEEETSTTSHHHHHHHH---------------TSTCEEEEEEESBHHHHHHHHH-------HHHH-TT--CTT--EEEE
T ss_pred             eEEEecCChHHHHHHHHH---------------hCCCCEEEEEcCCHHHHHHHHH-------HHHh-cC--ccc--cccc
Confidence            799999999988875532               1245678887753221111111       1111 11  123  4445


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ....+..+- +.++|+++|+-=+|+-..                 .-..-+..|++.=.+=|+|||.+++...
T Consensus        87 ~~d~~~~~~-~~~fD~Iv~NPP~~~~~~-----------------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen   87 QSDLFEALP-DGKFDLIVSNPPFHAGGD-----------------DGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             ESSTTTTCC-TTCEEEEEE---SBTTSH-----------------CHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccc-ccceeEEEEccchhcccc-----------------cchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            567776654 889999999977666322                 0011256677777889999999988653

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PTZ00146 fibrillarin; Provisional

Probab=96.65  E-value=0.02  Score=54.15  Aligned_cols=18  Identities=22%  Similarity=0.206  Sum_probs=14.8

Q ss_pred             EEEeeCCCCCcccHHHHH
Q 045960            3 RFADLGCSSGPNALLPTW   20 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~   20 (300)
                      +|+|+||++|..|..+..
T Consensus       135 ~VLDLGaG~G~~t~~lAd  152 (293)
T PTZ00146        135 KVLYLGAASGTTVSHVSD  152 (293)
T ss_pred             EEEEeCCcCCHHHHHHHH
Confidence            799999999998765543

>PRK05785 hypothetical protein; Provisional

Probab=96.62  E-value=0.0063  Score=55.12  Aligned_cols=27  Identities=41%  Similarity=0.503  Sum_probs=21.0

Q ss_pred             CccccccCCCCcccEEEeccccccccC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSR  110 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~  110 (300)
                      +++-.-=||++|+|+++|+++|||+.+
T Consensus        99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d  125 (226)
T PRK05785         99 GSFEALPFRDKSFDVVMSSFALHASDN  125 (226)
T ss_pred             echhhCCCCCCCEEEEEecChhhccCC
Confidence            344444478999999999999999554

>PRK04266 fibrillarin; Provisional

Probab=96.61  E-value=0.035  Score=50.46  Aligned_cols=23  Identities=17%  Similarity=0.127  Sum_probs=18.2

Q ss_pred             HHHHHHHHhhccCceeEEEEeec
Q 045960          135 TFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus       135 ~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      .+|+.-.+-|||||++++++..+
T Consensus       157 ~~L~~~~r~LKpGG~lvI~v~~~  179 (226)
T PRK04266        157 IAIDNAEFFLKDGGYLLLAIKAR  179 (226)
T ss_pred             HHHHHHHHhcCCCcEEEEEEecc
Confidence            35666777899999999997654

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.60  E-value=0.0084  Score=57.66  Aligned_cols=44  Identities=32%  Similarity=0.341  Sum_probs=35.1

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ..+|+|=+-.|||.+=.       +           ++-.+.||+.-++-|+|||+++.+++
T Consensus       144 ~~FDvVScQFalHY~Fe-------s-----------e~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  144 RKFDVVSCQFALHYAFE-------S-----------EEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             S-EEEEEEES-GGGGGS-------S-----------HHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCcceeehHHHHHHhcC-------C-----------HHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            58999999999999533       1           23357899999999999999999996

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.58  E-value=0.009  Score=53.49  Aligned_cols=46  Identities=26%  Similarity=0.169  Sum_probs=31.1

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +-|....-..+...+|.+++..+.+.   +|.          +               -.+-|+|||+|++...
T Consensus       132 ~~gd~~~~~~~~~~fD~I~~~~~~~~---~~~----------~---------------l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        132 IVGDGTLGYEENAPYDRIYVTAAGPD---IPK----------P---------------LIEQLKDGGIMVIPVG  177 (212)
T ss_pred             EECCcccCCCcCCCcCEEEECCCccc---chH----------H---------------HHHhhCCCcEEEEEEc
Confidence            44555554566788999999888654   331          1               1235999999998763

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=96.56  E-value=0.0094  Score=55.43  Aligned_cols=89  Identities=20%  Similarity=0.235  Sum_probs=61.1

Q ss_pred             ccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHH
Q 045960           96 LDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDM  175 (300)
Q Consensus        96 v~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~m  175 (300)
                      +|.|.|+-.+|-                      -+|...||++-++-|+|||+++++-.-|.-..-..+-.+.+.+...
T Consensus       159 fDaVvcsevleH----------------------V~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~i  216 (282)
T KOG1270|consen  159 FDAVVCSEVLEH----------------------VKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRI  216 (282)
T ss_pred             cceeeeHHHHHH----------------------HhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHh
Confidence            799999888887                      3457899999999999999999998766422111111233333335


Q ss_pred             HHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEE
Q 045960          176 ISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV  217 (300)
Q Consensus       176 v~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~  217 (300)
                      |-.|-          -.+-=|.+++|+..+++.++ +.++.+
T Consensus       217 vp~Gt----------h~~ekfi~p~e~~~~l~~~~-~~v~~v  247 (282)
T KOG1270|consen  217 VPKGT----------HTWEKFINPEELTSILNANG-AQVNDV  247 (282)
T ss_pred             cCCCC----------cCHHHcCCHHHHHHHHHhcC-cchhhh
Confidence            55553          23344578999999999986 665554

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=96.55  E-value=0.0061  Score=56.45  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=53.3

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCc-eeeee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGS-CFVAA   81 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~-~f~~~   81 (300)
                      +|.|+||++|..+..+...+    .        .....+|+..|+-.+   .+-         ......   ++ -|.. 
T Consensus        88 ~vLDiGcG~G~~~~~l~~~~----~--------~~~~~~v~giD~s~~---~l~---------~A~~~~---~~~~~~~-  139 (272)
T PRK11088         88 ALLDIGCGEGYYTHALADAL----P--------EITTMQLFGLDISKV---AIK---------YAAKRY---PQVTFCV-  139 (272)
T ss_pred             eEEEECCcCCHHHHHHHHhc----c--------cccCCeEEEECCCHH---HHH---------HHHHhC---CCCeEEE-
Confidence            69999999998776554321    1        111246777775221   110         011100   12 2222 


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                        ++..+--||++++|+++|..+-..                             ++.-++-|+|||++++...|.
T Consensus       140 --~d~~~lp~~~~sfD~I~~~~~~~~-----------------------------~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        140 --ASSHRLPFADQSLDAIIRIYAPCK-----------------------------AEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             --eecccCCCcCCceeEEEEecCCCC-----------------------------HHHHHhhccCCCEEEEEeCCC
Confidence              233333478999999998764211                             111345799999999887554

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.54  E-value=0.031  Score=48.61  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=27.4

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      .++|++++..+.+.                         +..+++.-.+-|+|||++++...+
T Consensus        96 ~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~Lk~gG~lv~~~~~  133 (187)
T PRK08287         96 GKADAIFIGGSGGN-------------------------LTAIIDWSLAHLHPGGRLVLTFIL  133 (187)
T ss_pred             cCCCEEEECCCccC-------------------------HHHHHHHHHHhcCCCeEEEEEEec
Confidence            57899998765432                         334566667889999999886643

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=96.50  E-value=0.0076  Score=59.14  Aligned_cols=163  Identities=17%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      .++|+||++|..++.+...               .|+.+++.-|.-..=-..+-+.+       ..   .+..++.+.-.
T Consensus       125 ~vLEIGcGsG~~ll~lA~~---------------~P~~~~iGIEI~~~~i~~a~~ka-------~~---~gL~NV~~i~~  179 (390)
T PRK14121        125 ILIEIGFGSGRHLLYQAKN---------------NPNKLFIGIEIHTPSIEQVLKQI-------EL---LNLKNLLIINY  179 (390)
T ss_pred             eEEEEcCcccHHHHHHHHh---------------CCCCCEEEEECCHHHHHHHHHHH-------HH---cCCCcEEEEEC
Confidence            5899999999877644321               24556666664221111111111       11   11235444332


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -....-..+|++++|.++.++...|..+ +         .   ++.   -...||+.-++-|+|||.+.+..   ++.  
T Consensus       180 DA~~ll~~~~~~s~D~I~lnFPdPW~Kk-r---------H---RRl---v~~~fL~e~~RvLkpGG~l~l~T---D~~--  238 (390)
T PRK14121        180 DARLLLELLPSNSVEKIFVHFPVPWDKK-P---------H---RRV---ISEDFLNEALRVLKPGGTLELRT---DSE--  238 (390)
T ss_pred             CHHHhhhhCCCCceeEEEEeCCCCcccc-c---------h---hhc---cHHHHHHHHHHHcCCCcEEEEEE---ECH--
Confidence            2222335689999999999999999433 1         0   111   13678999999999999987765   111  


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                         +....++..|...+..+.   +...+-|.+..|.  +.+-....| -.|-++...
T Consensus       239 ---~y~~~~~e~~~~~~~~~~---~~~~~~~~~i~Tk--yE~r~~~~G-~~Iy~l~~~  287 (390)
T PRK14121        239 ---LYFEFSLELFLKLPKAKI---EIKKNAQLEVSSK--YEDRWKKQN-KDIYDLRIY  287 (390)
T ss_pred             ---HHHHHHHHHHHhCCCcee---ecccCCCCCCCCH--HHHHHHHCC-CCEEEEEEE
Confidence               345566666655543332   1111344444444  444444555 445555444

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.48  E-value=0.032  Score=51.39  Aligned_cols=165  Identities=15%  Similarity=0.147  Sum_probs=94.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|...||+.|...+-+++.             .+.|.+.||..|--.|-=+.+=++     ..+..    +.-..|+.=.
T Consensus        74 ~ilEvGCGvGNtvfPll~~-------------~~n~~l~v~acDfsp~Ai~~vk~~-----~~~~e----~~~~afv~Dl  131 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKT-------------SPNNRLKVYACDFSPRAIELVKKS-----SGYDE----SRVEAFVWDL  131 (264)
T ss_pred             hheeeccCCCcccchhhhc-------------CCCCCeEEEEcCCChHHHHHHHhc-----cccch----hhhcccceec
Confidence            5889999999766644421             244559999988443322111111     00100    0011233222


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -++=-..-++.+|+|++..-+.|   |-+|+     +.            +.+-++.-.+=|||||.+++-=-|+.+-. 
T Consensus       132 t~~~~~~~~~~~svD~it~IFvL---SAi~p-----ek------------~~~a~~nl~~llKPGG~llfrDYg~~Dla-  190 (264)
T KOG2361|consen  132 TSPSLKEPPEEGSVDIITLIFVL---SAIHP-----EK------------MQSVIKNLRTLLKPGGSLLFRDYGRYDLA-  190 (264)
T ss_pred             cchhccCCCCcCccceEEEEEEE---eccCh-----HH------------HHHHHHHHHHHhCCCcEEEEeecccchHH-
Confidence            22225566778888887665553   55653     11            45556667788999999988777776421 


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                              -++-+ .+-.|++...-.=.-.+.|+-+.+|++.++.++| |...+++.-
T Consensus       191 --------qlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~  238 (264)
T KOG2361|consen  191 --------QLRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD  238 (264)
T ss_pred             --------HHhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence                    11111 3334443222110026889999999999999998 776665544

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.34  E-value=0.022  Score=50.58  Aligned_cols=44  Identities=23%  Similarity=0.242  Sum_probs=30.2

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      |++..-+.+..++|.+++..++++   +|+                     .    -.+-|+|||+|++.+.
T Consensus       131 ~d~~~~~~~~~~fD~Ii~~~~~~~---~~~---------------------~----l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        131 GDGKRGLEKHAPFDAIIVTAAAST---IPS---------------------A----LVRQLKDGGVLVIPVE  174 (205)
T ss_pred             CCcccCCccCCCccEEEEccCcch---hhH---------------------H----HHHhcCcCcEEEEEEc
Confidence            444443444578999999999887   331                     0    1245999999988764

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.33  E-value=0.012  Score=53.03  Aligned_cols=124  Identities=16%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||++|..++.+...               .|..+++..|.-..=....    .   ... ...+  ..+  +.-
T Consensus        89 ~~ilDig~G~G~~~~~l~~~---------------~~~~~v~~iD~~~~~~~~a----~---~~~-~~~~--~~~--~~~  141 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKE---------------RPDARVTAVDISPEALAVA----R---KNA-ARLG--LDN--VTF  141 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHH---------------CCCCEEEEEECCHHHHHHH----H---HHH-HHcC--CCe--EEE
Confidence            37999999999887765432               1235677666321111100    0   011 1111  112  223


Q ss_pred             cCCccccccCCCCcccEEEeccccccccC---CCCCCCC--CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSR---MPKGQGN--ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~---vP~~~~n--~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +-+.+.. .+|++++|+++|+--.+..+.   ++..+..  |..... -......++..|++.-.+-|+|||.+++..
T Consensus       142 ~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       142 LQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALF-GGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             EECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHc-CCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            4456655 457889999999755443221   1111000  111000 011223557788998999999999998865

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14967 putative methyltransferase; Provisional

Probab=96.25  E-value=0.041  Score=49.36  Aligned_cols=115  Identities=13%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHH--hHHHHHHHHHHHHHHhhccCceeEEEEeecCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLN--QFESDFSTFLKFRSEELKSQGRMVLTLLYNDN  159 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~--q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~  159 (300)
                      +-+++.. .+|.+++|+++++--.+.-+....  . ......+|..  --..++..|++.-.+-|+|||++++......+
T Consensus        89 ~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~  164 (223)
T PRK14967         89 RRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAP--P-SRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG  164 (223)
T ss_pred             EECchhh-hccCCCeeEEEECCCCCCCCcccc--c-ccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC
Confidence            3456655 467889999999854333221100  0 0001111110  11234677888888899999999877644422


Q ss_pred             CCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCC
Q 045960          160 FHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGS  211 (300)
Q Consensus       160 ~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gs  211 (300)
                              +.++++.+...|. .-+.+... .+|+ .+..-....++++.|.
T Consensus       165 --------~~~~~~~l~~~g~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~  205 (223)
T PRK14967        165 --------VERTLTRLSEAGL-DAEVVASQ-WIPF-GPVLRARAAWLERRGL  205 (223)
T ss_pred             --------HHHHHHHHHHCCC-CeEEEEee-ccCc-cHHHHHHHHHHHHcCC
Confidence                    3355555555553 44444555 5664 3333345577888883

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.92  E-value=0.025  Score=49.27  Aligned_cols=50  Identities=22%  Similarity=0.217  Sum_probs=35.3

Q ss_pred             cCCCCcccEEEeccccc----cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           90 LFPHNFLDFVYSSYALH----WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alH----WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      .+|.+++|++++..+.|    |.-..+               +...+...+|+.-.+-|+|||++++..
T Consensus        93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~---------------~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        93 RVGDDKVDVVMSDAAPNISGYWDIDHL---------------RSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             HhCCCCccEEEcCCCCCCCCCccccHH---------------HHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            36778899999977643    422111               112356788999999999999999875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=95.90  E-value=0.09  Score=46.84  Aligned_cols=99  Identities=17%  Similarity=0.261  Sum_probs=70.3

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      ||++|+|.|+-|-+|+=+.+       |..|.+                  +=|+-|.+.+++|+.-+         -..
T Consensus        71 f~d~sFD~VIlsqtLQ~~~~-------P~~vL~------------------EmlRVgr~~IVsFPNFg---------~W~  116 (193)
T PF07021_consen   71 FPDQSFDYVILSQTLQAVRR-------PDEVLE------------------EMLRVGRRAIVSFPNFG---------HWR  116 (193)
T ss_pred             CCCCCccEEehHhHHHhHhH-------HHHHHH------------------HHHHhcCeEEEEecChH---------HHH
Confidence            89999999999999988766       445443                  23677999999995322         245


Q ss_pred             HHHHHHHcCCCchhhhcc---ccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecc
Q 045960          171 VLKDMISEGLAEESKVKS---FEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSW  224 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~---f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~  224 (300)
                      .-..+.-.|..+..+.--   +.+.++.+-|..+++...++.| ++|++-..+...+
T Consensus       117 ~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~~~~  172 (193)
T PF07021_consen  117 NRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLDGGR  172 (193)
T ss_pred             HHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEcCCC
Confidence            556677778877654321   3123445679999999999998 8888877775443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.89  E-value=0.0068  Score=54.72  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=28.2

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      ++++|+|+++..-||+=                       .||..||.--.+-|||||.|.+.
T Consensus       118 L~~~svDv~VfcLSLMG-----------------------Tn~~~fi~EA~RvLK~~G~L~IA  157 (219)
T PF05148_consen  118 LEDESVDVAVFCLSLMG-----------------------TNWPDFIREANRVLKPGGILKIA  157 (219)
T ss_dssp             --TT-EEEEEEES---S-----------------------S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCceeEEEEEhhhhC-----------------------CCcHHHHHHHHheeccCcEEEEE
Confidence            59999999998888763                       25788888889999999998764

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.80  E-value=0.028  Score=44.47  Aligned_cols=52  Identities=19%  Similarity=0.207  Sum_probs=34.0

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .++++++|+++++-=.+.....+              ..-.++...|++.=.+=|+|||.+++...
T Consensus        65 ~~~~~~~D~Iv~npP~~~~~~~~--------------~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   65 PLPDGKFDLIVTNPPYGPRSGDK--------------AALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TCTTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hccCceeEEEEECCCCccccccc--------------hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            47888999999986665432211              11122567889989999999999998864

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.78  E-value=0.039  Score=49.23  Aligned_cols=99  Identities=18%  Similarity=0.118  Sum_probs=53.5

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|..+....              .++.+|+-.|.-.    .+.+..   ...+.. .+  ..++  ..+
T Consensus        80 ~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~----~~~~~A---~~~~~~-~g--~~~v--~~~  133 (215)
T TIGR00080        80 KVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIP----ELAEKA---ERRLRK-LG--LDNV--IVI  133 (215)
T ss_pred             EEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCH----HHHHHH---HHHHHH-CC--CCCe--EEE
Confidence            79999999999997543321              1124555555311    111111   111111 11  1222  223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .++...-+.+...+|++++..+.+.   +|+                         .-.+-|+|||+|++.+.
T Consensus       134 ~~d~~~~~~~~~~fD~Ii~~~~~~~---~~~-------------------------~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       134 VGDGTQGWEPLAPYDRIYVTAAGPK---IPE-------------------------ALIDQLKEGGILVMPVG  178 (215)
T ss_pred             ECCcccCCcccCCCCEEEEcCCccc---ccH-------------------------HHHHhcCcCcEEEEEEc
Confidence            3455444444568999998877654   331                         12345999999998763

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=95.74  E-value=0.074  Score=47.13  Aligned_cols=103  Identities=23%  Similarity=0.325  Sum_probs=67.7

Q ss_pred             EEEeeCCCCCcccHHHH--------------HHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhh
Q 045960            3 RFADLGCSSGPNALLPT--------------WEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRT   68 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~--------------~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~   68 (300)
                      ++.|+||++|.-|+..+              .+.++.+++.+.+.|  .+.++|.--|-|.-     ...++        
T Consensus        37 ~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~n~~vv~g~Ap~~-----L~~~~--------  101 (187)
T COG2242          37 RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VDNLEVVEGDAPEA-----LPDLP--------  101 (187)
T ss_pred             EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CCcEEEEeccchHh-----hcCCC--------
Confidence            58999999999999877              346777777777666  34577777775531     11111        


Q ss_pred             hcCCCCCceeeeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCc
Q 045960           69 EKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQG  148 (300)
Q Consensus        69 ~~~~~~~~~f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG  148 (300)
                          ++..+|   ++||  ++                                           ....|+.=.+-|+|||
T Consensus       102 ----~~daiF---IGGg--~~-------------------------------------------i~~ile~~~~~l~~gg  129 (187)
T COG2242         102 ----SPDAIF---IGGG--GN-------------------------------------------IEEILEAAWERLKPGG  129 (187)
T ss_pred             ----CCCEEE---ECCC--CC-------------------------------------------HHHHHHHHHHHcCcCC
Confidence                123466   3333  11                                           3445555677899999


Q ss_pred             eeEEEEeecCCCCCCCchHHHHHHHHHHHcCC
Q 045960          149 RMVLTLLYNDNFHATPGEPMLMVLKDMISEGL  180 (300)
Q Consensus       149 ~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~  180 (300)
                      ++|++..-.        +.+..++..|.+.|.
T Consensus       130 rlV~naitl--------E~~~~a~~~~~~~g~  153 (187)
T COG2242         130 RLVANAITL--------ETLAKALEALEQLGG  153 (187)
T ss_pred             eEEEEeecH--------HHHHHHHHHHHHcCC
Confidence            999998544        446677777777775

>PRK14968 putative methyltransferase; Provisional

Probab=95.73  E-value=0.17  Score=43.18  Aligned_cols=65  Identities=12%  Similarity=0.086  Sum_probs=38.1

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHh------HHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQ------FESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q------~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .+.+...+ ++.++|+++++..+++-.  |.     ..+...+...      .......|++.-.+-|+|||.+++...
T Consensus        79 ~~d~~~~~-~~~~~d~vi~n~p~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968         79 RSDLFEPF-RGDKFDVILFNPPYLPTE--EE-----EEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             eccccccc-cccCceEEEECCCcCCCC--ch-----hhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            45555544 556899999876654311  11     0111111100      123357789999999999999988763

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=95.70  E-value=0.11  Score=48.73  Aligned_cols=24  Identities=17%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHhhccCceeEEEEe
Q 045960          132 DFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       132 D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ....+++.-.+-|+|||++++.++
T Consensus       229 ~~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       229 LVRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEC
Confidence            456788888889999999998875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.54  E-value=0.089  Score=47.30  Aligned_cols=154  Identities=14%  Similarity=0.100  Sum_probs=98.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.++||++|-.+..+..               .-|.++..=+|...+-+.++-.-+....  +.+    -.+++..= |
T Consensus        28 ~vLEiaSGtGqHa~~FA~---------------~lP~l~WqPSD~~~~~~~sI~a~~~~~~--~~N----v~~P~~lD-v   85 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQ---------------ALPHLTWQPSDPDDNLRPSIRAWIAEAG--LPN----VRPPLALD-V   85 (204)
T ss_pred             eEEEEcCCccHHHHHHHH---------------HCCCCEEcCCCCChHHHhhHHHHHHhcC--Ccc----cCCCeEee-c
Confidence            488999999987765532               2367888889999988877765333211  000    00112110 1


Q ss_pred             CCccccc----cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           83 PGSFYTR----LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        83 pgSFy~~----l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      ...--.-    -++..++|.++|.+.+|-++-        +            --..+++.-++-|++||.|++.-+-..
T Consensus        86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~--------~------------~~~~lf~~a~~~L~~gG~L~~YGPF~~  145 (204)
T PF06080_consen   86 SAPPWPWELPAPLSPESFDAIFCINMLHISPW--------S------------AVEGLFAGAARLLKPGGLLFLYGPFNR  145 (204)
T ss_pred             CCCCCccccccccCCCCcceeeehhHHHhcCH--------H------------HHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence            1110000    126789999999999999443        1            124567778899999999998877665


Q ss_pred             CCCCCCc--hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeE
Q 045960          159 NFHATPG--EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDI  214 (300)
Q Consensus       159 ~~~~~~~--~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I  214 (300)
                      ++..++.  ..+...|++              - +--|-.|..+++.++-++.| ++.
T Consensus       146 ~G~~ts~SN~~FD~sLr~--------------r-dp~~GiRD~e~v~~lA~~~G-L~l  187 (204)
T PF06080_consen  146 DGKFTSESNAAFDASLRS--------------R-DPEWGIRDIEDVEALAAAHG-LEL  187 (204)
T ss_pred             CCEeCCcHHHHHHHHHhc--------------C-CCCcCccCHHHHHHHHHHCC-Ccc
Confidence            5554443  556666653              1 43467899999999999998 443

The function of this family is unknown.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=95.44  E-value=0.051  Score=48.51  Aligned_cols=24  Identities=33%  Similarity=0.623  Sum_probs=19.6

Q ss_pred             CccccccCCCCcccEEEeccccccc
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWL  108 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWL  108 (300)
                      ++... -+|++++|+|+++.+||++
T Consensus        95 ~d~~~-~~~~~sfD~V~~~~vL~hl  118 (204)
T TIGR03587        95 GSLFD-PFKDNFFDLVLTKGVLIHI  118 (204)
T ss_pred             eeccC-CCCCCCEEEEEECChhhhC
Confidence            44555 5789999999999999875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN03075 nicotianamine synthase; Provisional

Probab=95.40  E-value=0.099  Score=49.61  Aligned_cols=41  Identities=12%  Similarity=0.166  Sum_probs=30.9

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+|+||+. +||-+.+-                    |-...|+.-++-|+|||.+++-+
T Consensus       193 l~~FDlVF~~-ALi~~dk~--------------------~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        193 LKEYDVVFLA-ALVGMDKE--------------------EKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cCCcCEEEEe-cccccccc--------------------cHHHHHHHHHHhcCCCcEEEEec
Confidence            3679999999 66654331                    23566777889999999998887

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=95.27  E-value=0.11  Score=48.69  Aligned_cols=42  Identities=12%  Similarity=0.081  Sum_probs=29.9

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      .+++++|+++++...++                         +..++..-.+-|+|||++++.....
T Consensus       221 ~~~~~fDlVvan~~~~~-------------------------l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       221 PIEGKADVIVANILAEV-------------------------IKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             ccCCCceEEEEecCHHH-------------------------HHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            45678999999865443                         2345556678899999998875443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.20  E-value=0.16  Score=50.24  Aligned_cols=60  Identities=17%  Similarity=0.119  Sum_probs=35.0

Q ss_pred             CCCCcccEEEecc---ccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           91 FPHNFLDFVYSSY---ALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        91 ~P~~sv~~~~Ss~---alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ++.+++|.+++..   ...-+.+-|+...  ++..+     ..+......+|..-++-|+|||+|+....
T Consensus       309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l-----~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDI-----AALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             cccCCCCEEEECCCCCcccccccCccccccCCHHHH-----HHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            4567899998432   1212233333211  12222     12345567788888899999999987653

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=94.89  E-value=0.22  Score=45.56  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=25.0

Q ss_pred             cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ++|+++++...+.                         +..+++.-.+-|+|||++++.-
T Consensus       179 ~fD~Vvani~~~~-------------------------~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        179 KADVIVANILANP-------------------------LLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             CcCEEEEcCcHHH-------------------------HHHHHHHHHHhcCCCcEEEEEE
Confidence            7899998754333                         2345555677899999999863

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=94.88  E-value=0.25  Score=49.12  Aligned_cols=120  Identities=14%  Similarity=0.111  Sum_probs=60.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|.-|+.+.+..           +   +.-+|+-.|+-.+=-..+=       ..... .+  ..++  ..+
T Consensus       253 ~VLDlgaG~G~~t~~la~~~-----------~---~~~~v~avDi~~~~l~~~~-------~n~~~-~g--~~~v--~~~  306 (444)
T PRK14902        253 TVLDACAAPGGKTTHIAELL-----------K---NTGKVVALDIHEHKLKLIE-------ENAKR-LG--LTNI--ETK  306 (444)
T ss_pred             EEEEeCCCCCHHHHHHHHHh-----------C---CCCEEEEEeCCHHHHHHHH-------HHHHH-cC--CCeE--EEE
Confidence            69999999999998665432           1   1235666664321111111       11111 11  1121  112


Q ss_pred             CCcccc--ccCCCCcccEEEecc---ccccccCCCCCCCC--CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYT--RLFPHNFLDFVYSSY---ALHWLSRMPKGQGN--ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~--~l~P~~sv~~~~Ss~---alHWLS~vP~~~~n--~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -+.+..  .-+| +++|.|++..   .+..+++.|+....  +..+.     ...+--..+|+.=.+-|+|||+||...
T Consensus       307 ~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~-----~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        307 ALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIE-----SLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             eCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHH-----HHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            222221  1233 6789998742   34444554542221  11111     123334568888889999999998543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.84  E-value=0.06  Score=49.31  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHhhccCceeEEEE
Q 045960          131 SDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       131 ~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      .++..+++.-.+=|+|||++++..
T Consensus       215 ~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        215 DFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             HHHHHHHHHHHHhcccCCEEEEEE
Confidence            456778888888999999999865

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=94.78  E-value=0.082  Score=48.92  Aligned_cols=72  Identities=14%  Similarity=0.169  Sum_probs=46.3

Q ss_pred             cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHH
Q 045960           95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKD  174 (300)
Q Consensus        95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~  174 (300)
                      ++|+|+||==.+=   .+.. .|+....+-.+.+..-++..+++.=++-|||||++.+...  +       +.+.+.+.-
T Consensus       115 ~fD~Ii~NPPyf~---~~~~-~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r--~-------erl~ei~~~  181 (248)
T COG4123         115 SFDLIICNPPYFK---QGSR-LNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR--P-------ERLAEIIEL  181 (248)
T ss_pred             ccCEEEeCCCCCC---Cccc-cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec--H-------HHHHHHHHH
Confidence            7788877521111   0011 1344555666667788899999999999999999877762  2       335566666


Q ss_pred             HHHcC
Q 045960          175 MISEG  179 (300)
Q Consensus       175 mv~eG  179 (300)
                      |..-+
T Consensus       182 l~~~~  186 (248)
T COG4123         182 LKSYN  186 (248)
T ss_pred             HHhcC
Confidence            55544

>PHA03411 putative methyltransferase; Provisional

Probab=94.71  E-value=0.18  Score=47.39  Aligned_cols=114  Identities=13%  Similarity=0.097  Sum_probs=63.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...               .+..+|+..|+-. ++-.+.+..              .+++  ..+
T Consensus        67 rVLDLGcGsGilsl~la~r---------------~~~~~V~gVDisp-~al~~Ar~n--------------~~~v--~~v  114 (279)
T PHA03411         67 KVLDLCAGIGRLSFCMLHR---------------CKPEKIVCVELNP-EFARIGKRL--------------LPEA--EWI  114 (279)
T ss_pred             eEEEcCCCCCHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHHHh--------------CcCC--EEE
Confidence            7999999999766543221               0125677777532 222222110              0111  113


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHh---HH-H--HHHHHHHHHHHhhccCceeEEEEee
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQ---FE-S--DFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q---~~-~--D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      -+++.. +.+..++|+|+|+-.++++..        ..-.+.++-+   +. +  .+..||+..+.=|+|+|...+.+.|
T Consensus       115 ~~D~~e-~~~~~kFDlIIsNPPF~~l~~--------~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss  185 (279)
T PHA03411        115 TSDVFE-FESNEKFDVVISNPPFGKINT--------TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG  185 (279)
T ss_pred             ECchhh-hcccCCCcEEEEcCCccccCc--------hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence            344443 234578999999999999543        1112212111   01 1  1578999999999999977666543


Q ss_pred             c
Q 045960          157 N  157 (300)
Q Consensus       157 ~  157 (300)
                      +
T Consensus       186 ~  186 (279)
T PHA03411        186 R  186 (279)
T ss_pred             c
Confidence            3

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.56  E-value=0.1  Score=49.53  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHhhccCceeEEEEe
Q 045960          133 FSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ...+++.-.+-|+|||++++.++
T Consensus       242 ~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        242 VRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEEC
Confidence            45677777788999999998764

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=94.30  E-value=0.048  Score=50.86  Aligned_cols=41  Identities=17%  Similarity=0.245  Sum_probs=33.6

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ++++|+|+++..-||+=                       .||..|++--.+-|++||.+.+.=
T Consensus       224 l~d~svDvaV~CLSLMg-----------------------tn~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  224 LEDESVDVAVFCLSLMG-----------------------TNLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             CccCcccEEEeeHhhhc-----------------------ccHHHHHHHHHHHhccCceEEEEe
Confidence            78999999886655542                       368999999999999999987754

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=94.30  E-value=0.29  Score=48.68  Aligned_cols=61  Identities=8%  Similarity=0.034  Sum_probs=39.3

Q ss_pred             CCcccEEEe---ccccccccCCCCCCCC-CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           93 HNFLDFVYS---SYALHWLSRMPKGQGN-ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        93 ~~sv~~~~S---s~alHWLS~vP~~~~n-~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      ++++|.|+.   .+.+..+.+-|+.... +++    -..+..+.....|..=++-|+|||+||......
T Consensus       305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~----~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKE----DFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hccCCEEEECCCCCCCccccCChHHHHhCCHH----HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            567899886   2456666665543221 121    112345556788988899999999998877543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.27  E-value=0.015  Score=58.45  Aligned_cols=45  Identities=29%  Similarity=0.309  Sum_probs=34.9

Q ss_pred             cCCCCcccEEEeccccc-cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           90 LFPHNFLDFVYSSYALH-WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alH-WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      -||++++|++||+-|+. |.+.-                      ..+|----+-|+|||.+|+.-.-
T Consensus       176 Pfp~~~fDmvHcsrc~i~W~~~~----------------------g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  176 PFPSNAFDMVHCSRCLIPWHPND----------------------GFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             cCCccchhhhhcccccccchhcc----------------------cceeehhhhhhccCceEEecCCc
Confidence            38999999999999986 84441                      22555567889999999998753

; GO: 0008168 methyltransferase activity

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.27  E-value=0.26  Score=48.73  Aligned_cols=124  Identities=15%  Similarity=0.086  Sum_probs=66.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||+.|.-|+.+...+           +    .-+|+..|.-.+=-..+-+       .... .+-  . +-+..+
T Consensus       241 ~VLDlcag~G~kt~~la~~~-----------~----~~~v~a~D~~~~~l~~~~~-------n~~r-~g~--~-~~v~~~  294 (426)
T TIGR00563       241 TILDACAAPGGKTTHILELA-----------P----QAQVVALDIHEHRLKRVYE-------NLKR-LGL--T-IKAETK  294 (426)
T ss_pred             eEEEeCCCccHHHHHHHHHc-----------C----CCeEEEEeCCHHHHHHHHH-------HHHH-cCC--C-eEEEEe
Confidence            69999999999998665321           1    2456666652221111111       1111 111  1 222222


Q ss_pred             CCcccc--ccCCCCcccEEEec---cccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYT--RLFPHNFLDFVYSS---YALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~--~l~P~~sv~~~~Ss---~alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .+.-.+  ...+.+++|.|++-   +++.-+.+.|+...  ++..+.     +..+.-..+|..=++-|+|||+||....
T Consensus       295 ~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~-----~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       295 DGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIA-----ELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             ccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHH-----HHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            232221  12367789999863   34444555565332  133332     2344557788888888999999998764


Q ss_pred             ec
Q 045960          156 YN  157 (300)
Q Consensus       156 g~  157 (300)
                      .-
T Consensus       370 s~  371 (426)
T TIGR00563       370 SV  371 (426)
T ss_pred             CC
Confidence            33

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=94.24  E-value=0.11  Score=52.68  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=64.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+...               .|..+|+.-|.-. +.-.+.+      ..... .+-. .+  +..+
T Consensus       141 ~VLDlG~GsG~iai~la~~---------------~p~~~v~avDis~-~al~~A~------~N~~~-~~l~-~~--v~~~  194 (506)
T PRK01544        141 NILELGTGSGCIAISLLCE---------------LPNANVIATDISL-DAIEVAK------SNAIK-YEVT-DR--IQII  194 (506)
T ss_pred             EEEEccCchhHHHHHHHHH---------------CCCCeEEEEECCH-HHHHHHH------HHHHH-cCCc-cc--eeee
Confidence            6999999999888755431               1346788888621 1111111      11111 1100 11  2224


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHH------HHHH-hHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHK------AFLN-QFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~------ay~~-q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -++++.. +|.+++|+++|+--....+..+..   +++|.+      .+.. .--..+..+++.-.+=|+|||.+++.+
T Consensus       195 ~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l---~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        195 HSNWFEN-IEKQKFDFIVSNPPYISHSEKSEM---AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             ecchhhh-CcCCCccEEEECCCCCCchhhhhc---CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            4566553 366789999997543333222211   111111      1100 112335778888888999999999875

>TIGR00536 hemK_fam HemK family putative methylases

Probab=93.90  E-value=0.19  Score=46.97  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHhhccCceeEEEEe
Q 045960          131 SDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       131 ~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .+...+++.-.+-|+|||.+++.++
T Consensus       221 ~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       221 NILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             HHHHHHHHHHHHhccCCCEEEEEEC
Confidence            3567888888888999999988884

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00811 spermidine synthase; Provisional

Probab=93.75  E-value=0.36  Score=45.20  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=31.1

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +.+++|++++-.+-+|   .|.      .  ..|       -..|++.-.+-|+|||.|+++.
T Consensus       147 ~~~~yDvIi~D~~dp~---~~~------~--~l~-------t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        147 TENSFDVIIVDSTDPV---GPA------E--GLF-------TKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             CCCcccEEEECCCCCC---Cch------h--hhh-------HHHHHHHHHHhcCCCcEEEEeC
Confidence            5678999999877666   221      1  122       1466777778899999998764

>PRK07402 precorrin-6B methylase; Provisional

Probab=93.74  E-value=0.32  Score=42.54  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhhccCceeEEEEe
Q 045960          133 FSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +..+|+.-.+-|+|||++++...
T Consensus       121 ~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        121 IKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEee
Confidence            45667777777999999999874

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=93.70  E-value=0.24  Score=49.26  Aligned_cols=119  Identities=22%  Similarity=0.269  Sum_probs=59.1

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+...               .|..+|+..|.-.     -.  +......... .+.   +  +..+
T Consensus       254 rVLDLGcGSG~IaiaLA~~---------------~p~a~VtAVDiS~-----~A--Le~AreNa~~-~g~---r--V~fi  305 (423)
T PRK14966        254 RVWDLGTGSGAVAVTVALE---------------RPDAFVRASDISP-----PA--LETARKNAAD-LGA---R--VEFA  305 (423)
T ss_pred             EEEEEeChhhHHHHHHHHh---------------CCCCEEEEEECCH-----HH--HHHHHHHHHH-cCC---c--EEEE
Confidence            6999999999988765421               1235666666411     00  0000111111 110   1  2224


Q ss_pred             CCccccccCC-CCcccEEEeccccccccCCCCCCCC--CHHH----HHHHHH--hHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           83 PGSFYTRLFP-HNFLDFVYSSYALHWLSRMPKGQGN--ESDV----HKAFLN--QFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        83 pgSFy~~l~P-~~sv~~~~Ss~alHWLS~vP~~~~n--~~~v----~~ay~~--q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      -+++.+..+| ..++|+++|+=  .+   +|..-..  ++.+    ..|...  .--..+.++++.-.+-|+|||.+++.
T Consensus       306 ~gDl~e~~l~~~~~FDLIVSNP--PY---I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        306 HGSWFDTDMPSEGKWDIIVSNP--PY---IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             EcchhccccccCCCccEEEECC--CC---CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            4566555454 35799999973  12   2211100  1111    011110  01122567777777889999998776


Q ss_pred             E
Q 045960          154 L  154 (300)
Q Consensus       154 ~  154 (300)
                      .
T Consensus       381 i  381 (423)
T PRK14966        381 H  381 (423)
T ss_pred             E
Confidence            6

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=93.66  E-value=0.7  Score=42.02  Aligned_cols=108  Identities=16%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             eeeeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           77 CFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        77 ~f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      .|+.|-+.+--+  +|+.|+|.|++..+|.=  .                    +|-..-|+.-.+=|+|||++++.=-|
T Consensus       129 ~fvva~ge~l~~--l~d~s~DtVV~TlvLCS--v--------------------e~~~k~L~e~~rlLRpgG~iifiEHv  184 (252)
T KOG4300|consen  129 RFVVADGENLPQ--LADGSYDTVVCTLVLCS--V--------------------EDPVKQLNEVRRLLRPGGRIIFIEHV  184 (252)
T ss_pred             EEEeechhcCcc--cccCCeeeEEEEEEEec--c--------------------CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence            577776655432  29999999999888764  2                    23456677788899999999888766


Q ss_pred             cCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          157 NDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       157 ~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                      ++..     +.+...|+.-++- ++.   +     .-+-+.=--|.-+.++++. |++.+.+.+..+
T Consensus       185 a~~y-----~~~n~i~q~v~ep-~~~---~-----~~dGC~ltrd~~e~Leda~-f~~~~~kr~~~~  236 (252)
T KOG4300|consen  185 AGEY-----GFWNRILQQVAEP-LWH---L-----ESDGCVLTRDTGELLEDAE-FSIDSCKRFNFG  236 (252)
T ss_pred             cccc-----hHHHHHHHHHhch-hhh---e-----eccceEEehhHHHHhhhcc-cccchhhcccCC
Confidence            6543     2344444432221 111   0     1122222346667777774 888777766544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=93.58  E-value=0.54  Score=41.27  Aligned_cols=22  Identities=23%  Similarity=0.378  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhhccCceeEEEE
Q 045960          133 FSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+|+.-.+-|+|||++++..
T Consensus       124 ~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        124 LKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEe
Confidence            4556777778899999998755

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=93.33  E-value=0.8  Score=45.62  Aligned_cols=122  Identities=11%  Similarity=0.010  Sum_probs=63.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+...+    .          ..-+|+-.|.-..=...+=+.+.       . .+  ..++  ..+
T Consensus       253 ~VLDlgaG~G~kt~~la~~~----~----------~~~~V~avD~s~~~l~~~~~~~~-------~-~g--~~~v--~~~  306 (445)
T PRK14904        253 TVLDLCAAPGGKSTFMAELM----Q----------NRGQITAVDRYPQKLEKIRSHAS-------A-LG--ITII--ETI  306 (445)
T ss_pred             EEEEECCCCCHHHHHHHHHh----C----------CCcEEEEEECCHHHHHHHHHHHH-------H-hC--CCeE--EEE
Confidence            68999999999998554321    0          11356666643322222211111       1 11  1121  111


Q ss_pred             CCccccccCCCCcccEEEe----ccccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           83 PGSFYTRLFPHNFLDFVYS----SYALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~S----s~alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      -+.. ..+.|++++|.|+.    +..-+|- +-|+...  ++..+.     +..+....+|..=++-|+|||+|+.....
T Consensus       307 ~~Da-~~~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~~~~~~~~-----~l~~~q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        307 EGDA-RSFSPEEQPDAILLDAPCTGTGVLG-RRAELRWKLTPEKLA-----ELVGLQAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             eCcc-cccccCCCCCEEEEcCCCCCcchhh-cCcchhhcCCHHHHH-----HHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            1222 12336778999983    3444443 2233211  122222     23445677899999999999999987643


Q ss_pred             c
Q 045960          157 N  157 (300)
Q Consensus       157 ~  157 (300)
                      -
T Consensus       380 ~  380 (445)
T PRK14904        380 I  380 (445)
T ss_pred             C
Confidence            3

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=92.71  E-value=0.15  Score=48.98  Aligned_cols=56  Identities=23%  Similarity=0.314  Sum_probs=41.4

Q ss_pred             cCCcccccc---C--CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRL---F--PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l---~--P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ++-+|+.+|   +  ++-++|+|=|=+|+|+-=.       .           ..-...+|..-++-|+|||.|+-+++
T Consensus       178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe-------t-----------ee~ar~~l~Nva~~LkpGG~FIgTiP  238 (389)
T KOG1975|consen  178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE-------T-----------EESARIALRNVAKCLKPGGVFIGTIP  238 (389)
T ss_pred             EeccchhHHHHhccCCCCCcceeeeeeeEeeeec-------c-----------HHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            446777654   3  5556999999999997211       0           11246789999999999999999985

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=92.27  E-value=0.26  Score=45.80  Aligned_cols=81  Identities=26%  Similarity=0.434  Sum_probs=57.7

Q ss_pred             cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHH
Q 045960           95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKD  174 (300)
Q Consensus        95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~  174 (300)
                      ..|.+.|++||.=.++-+                  ..+.+-|+.-+.=|||||.|++...-..+.  +           
T Consensus       158 ~~D~v~s~fcLE~a~~d~------------------~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--Y-----------  206 (256)
T PF01234_consen  158 KFDCVISSFCLESACKDL------------------DEYRRALRNISSLLKPGGHLILAGVLGSTY--Y-----------  206 (256)
T ss_dssp             SEEEEEEESSHHHH-SSH------------------HHHHHHHHHHHTTEEEEEEEEEEEESS-SE--E-----------
T ss_pred             chhhhhhhHHHHHHcCCH------------------HHHHHHHHHHHHHcCCCcEEEEEEEcCcee--E-----------
Confidence            599999999999988722                  235677788899999999999987643321  1           


Q ss_pred             HHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          175 MISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       175 mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      |          +-.- .+|...-+.+.+++.|+++| |.|...+
T Consensus       207 ~----------vG~~-~F~~l~l~ee~v~~al~~aG-~~i~~~~  238 (256)
T PF01234_consen  207 M----------VGGH-KFPCLPLNEEFVREALEEAG-FDIEDLE  238 (256)
T ss_dssp             E----------ETTE-EEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred             E----------ECCE-ecccccCCHHHHHHHHHHcC-CEEEecc
Confidence            0          1112 47888889999999999999 9999988

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=92.25  E-value=0.42  Score=43.79  Aligned_cols=54  Identities=26%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      |++.+||-++|-.|++||=..-+...||           ++.+.+|+..-+.-|++|++-|+++-
T Consensus       108 frpGtFDg~ISISAvQWLcnA~~s~~~P-----------~~Rl~~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  108 FRPGTFDGVISISAVQWLCNADKSLHVP-----------KKRLLRFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             CCCCccceEEEeeeeeeecccCccccCh-----------HHHHHHHhhhhhhhhccCceeEEEec
Confidence            8999999999999999995532221111           44578899999999999999999994

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=91.86  E-value=1.6  Score=43.26  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHhhccCceeEEEE
Q 045960          129 FESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       129 ~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ..+....+|..=++-|||||+||...
T Consensus       359 l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        359 LAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            34556788999999999999998654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=90.98  E-value=0.99  Score=41.63  Aligned_cols=86  Identities=17%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      .++|+|.|.=.|+-   ||.                   -..|+++=++=+||||.|++.-.-|.-        ....+-
T Consensus       123 ~~FDvV~cmEVlEH---v~d-------------------p~~~~~~c~~lvkP~G~lf~STinrt~--------ka~~~~  172 (243)
T COG2227         123 GQFDVVTCMEVLEH---VPD-------------------PESFLRACAKLVKPGGILFLSTINRTL--------KAYLLA  172 (243)
T ss_pred             CCccEEEEhhHHHc---cCC-------------------HHHHHHHHHHHcCCCcEEEEeccccCH--------HHHHHH
Confidence            78999998777776   664                   245777789999999999988766532        111222


Q ss_pred             HHHHcCCCchhhhccccCCCcc------cCCHHHHHHHHHhcCCeeEEEEE
Q 045960          174 DMISEGLAEESKVKSFEDFPIY------RASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y------~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      -+..|      .+-.+  +|--      +-.++|+..++...| +++....
T Consensus       173 i~~ae------~vl~~--vP~gTH~~~k~irp~El~~~~~~~~-~~~~~~~  214 (243)
T COG2227         173 IIGAE------YVLRI--VPKGTHDYRKFIKPAELIRWLLGAN-LKIIDRK  214 (243)
T ss_pred             HHHHH------HHHHh--cCCcchhHHHhcCHHHHHHhcccCC-ceEEeec
Confidence            11122      12222  2222      346788888888876 5555443

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=90.66  E-value=0.78  Score=44.03  Aligned_cols=18  Identities=28%  Similarity=0.434  Sum_probs=15.2

Q ss_pred             EEEeeCCCCCcccHHHHH
Q 045960            3 RFADLGCSSGPNALLPTW   20 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~   20 (300)
                      +|.|+||++|.+++.+..
T Consensus        83 ~VLDIG~GtG~~a~~LA~  100 (322)
T PRK13943         83 RVLEIGGGTGYNAAVMSR  100 (322)
T ss_pred             EEEEEeCCccHHHHHHHH
Confidence            799999999999886643

>TIGR00417 speE spermidine synthase

Probab=90.63  E-value=1  Score=41.80  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=29.1

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      .+++|++++..+-++   -|.     .   ..|       -..|++.-++-|+|||++++.
T Consensus       143 ~~~yDvIi~D~~~~~---~~~-----~---~l~-------~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPV---GPA-----E---TLF-------TKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCC---Ccc-----c---chh-------HHHHHHHHHHHhCCCcEEEEc
Confidence            468999998876554   121     0   112       146666777889999999987

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK03612 spermidine synthase; Provisional

Probab=89.93  E-value=1.2  Score=45.37  Aligned_cols=79  Identities=14%  Similarity=0.250  Sum_probs=45.8

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ++++|++++...-+|   .|.       ..+.|.       ..|++.-.+-|+|||+++++.. .+...   .+.+..+.
T Consensus       371 ~~~fDvIi~D~~~~~---~~~-------~~~L~t-------~ef~~~~~~~L~pgG~lv~~~~-~~~~~---~~~~~~i~  429 (521)
T PRK03612        371 AEKFDVIIVDLPDPS---NPA-------LGKLYS-------VEFYRLLKRRLAPDGLLVVQST-SPYFA---PKAFWSIE  429 (521)
T ss_pred             CCCCCEEEEeCCCCC---Ccc-------hhccch-------HHHHHHHHHhcCCCeEEEEecC-Ccccc---hHHHHHHH
Confidence            357899999865544   221       112222       3455555678999999988752 11111   16677777


Q ss_pred             HHHHHcCCCchhhhccccCCCcc
Q 045960          173 KDMISEGLAEESKVKSFEDFPIY  195 (300)
Q Consensus       173 ~~mv~eG~i~~e~~d~f~~~P~y  195 (300)
                      +.|.+.|. .-.. -.. ++|.|
T Consensus       430 ~~l~~~gf-~v~~-~~~-~vps~  449 (521)
T PRK03612        430 ATLEAAGL-ATTP-YHV-NVPSF  449 (521)
T ss_pred             HHHHHcCC-EEEE-EEe-CCCCc
Confidence            77777776 2221 223 46777

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=89.65  E-value=1.1  Score=38.29  Aligned_cols=18  Identities=11%  Similarity=-0.012  Sum_probs=15.7

Q ss_pred             EEEeeCCCCCcccHHHHH
Q 045960            3 RFADLGCSSGPNALLPTW   20 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~   20 (300)
                      +|.|+||+.|..|..+++
T Consensus        16 ~vLEiG~G~G~lt~~l~~   33 (169)
T smart00650       16 TVLEIGPGKGALTEELLE   33 (169)
T ss_pred             EEEEECCCccHHHHHHHh
Confidence            689999999999987755

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=89.48  E-value=3  Score=38.56  Aligned_cols=27  Identities=15%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960          129 FESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       129 ~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ..+....+|+.=++-|+|||+||....
T Consensus       174 l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       174 ISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            344556789988899999999986653

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=88.95  E-value=1.5  Score=37.75  Aligned_cols=115  Identities=19%  Similarity=0.139  Sum_probs=54.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+++|+|||.|+-|-.+++..              .+.-.|+--|+...+=-.....+.              .+++-..
T Consensus        25 ~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~~~~~~~~~i~--------------~d~~~~~   76 (181)
T PF01728_consen   25 FTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPMDPLQNVSFIQ--------------GDITNPE   76 (181)
T ss_dssp             EEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSSTGS-TTEEBTT--------------GGGEEEE
T ss_pred             cEEEEcCCcccceeeeeeecc--------------cccceEEEEeccccccccceeeee--------------cccchhh
Confidence            689999999999887655443              234788888887661001111111              1122111


Q ss_pred             cCCccccccCCC--CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           82 SPGSFYTRLFPH--NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        82 vpgSFy~~l~P~--~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      .-. -....++.  ..+|++.|=.+.++..+ +.  .+.....+.        ...-|..=-+-|+|||.||+-+..
T Consensus        77 ~~~-~i~~~~~~~~~~~dlv~~D~~~~~~g~-~~--~d~~~~~~l--------~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   77 NIK-DIRKLLPESGEKFDLVLSDMAPNVSGD-RN--IDEFISIRL--------ILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             HSH-HGGGSHGTTTCSESEEEE-------SS-HH--SSHHHHHHH--------HHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             HHH-hhhhhccccccCcceeccccccCCCCc-hh--hHHHHHHHH--------HHHHHHHHHhhhcCCCEEEEEecc
Confidence            111 22333333  78999998876665332 00  001111111        122222333558999999998764

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=88.40  E-value=3.1  Score=39.64  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||+-|+-++.+.+               ..|+.++.+.|.   |+-.|=    .-...+..+..   .+.  ..+
T Consensus       161 ~vlDlGCG~Gvlg~~la~---------------~~p~~~vtmvDv---n~~Av~----~ar~Nl~~N~~---~~~--~v~  213 (300)
T COG2813         161 KVLDLGCGYGVLGLVLAK---------------KSPQAKLTLVDV---NARAVE----SARKNLAANGV---ENT--EVW  213 (300)
T ss_pred             cEEEeCCCccHHHHHHHH---------------hCCCCeEEEEec---CHHHHH----HHHHhHHHcCC---Ccc--EEE
Confidence            699999999987774432               235788888873   333332    22222222111   221  123


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -.+=|..+..  ++|+++||==+|==.+         .+..+        -..++..=++-|++||.|.+..-
T Consensus       214 ~s~~~~~v~~--kfd~IisNPPfh~G~~---------v~~~~--------~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         214 ASNLYEPVEG--KFDLIISNPPFHAGKA---------VVHSL--------AQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             Eecccccccc--cccEEEeCCCccCCcc---------hhHHH--------HHHHHHHHHHhhccCCEEEEEEc
Confidence            3455677766  8999999865552111         11111        13566667788999999988775

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=88.38  E-value=0.54  Score=41.70  Aligned_cols=152  Identities=16%  Similarity=0.232  Sum_probs=80.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee-
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA-   81 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~-   81 (300)
                      .+.|+||+.|...+....               ..|+..++--|.-.+=....-+.+.       +.   ...|+.+.- 
T Consensus        20 l~lEIG~G~G~~l~~~A~---------------~~Pd~n~iGiE~~~~~v~~a~~~~~-------~~---~l~Nv~~~~~   74 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAK---------------RNPDINFIGIEIRKKRVAKALRKAE-------KR---GLKNVRFLRG   74 (195)
T ss_dssp             EEEEET-TTSHHHHHHHH---------------HSTTSEEEEEES-HHHHHHHHHHHH-------HH---TTSSEEEEES
T ss_pred             eEEEecCCCCHHHHHHHH---------------HCCCCCEEEEecchHHHHHHHHHHH-------hh---cccceEEEEc
Confidence            578999999987653321               1356777777654332222222111       11   125655554 


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHH--HHHHHHHHHHhhccCceeEEEEeecCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESD--FSTFLKFRSEELKSQGRMVLTLLYNDN  159 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D--~~~fL~~Ra~EL~~GG~~vl~~~g~~~  159 (300)
                      =...+...++|++||+-++-++-==|-.+                ++.++-  -..||..-++-|+|||.+.+..   ++
T Consensus        75 da~~~l~~~~~~~~v~~i~i~FPDPWpK~----------------rH~krRl~~~~fl~~~~~~L~~gG~l~~~T---D~  135 (195)
T PF02390_consen   75 DARELLRRLFPPGSVDRIYINFPDPWPKK----------------RHHKRRLVNPEFLELLARVLKPGGELYFAT---DV  135 (195)
T ss_dssp             -CTTHHHHHSTTTSEEEEEEES-----SG----------------GGGGGSTTSHHHHHHHHHHEEEEEEEEEEE---S-
T ss_pred             cHHHHHhhcccCCchheEEEeCCCCCccc----------------chhhhhcCCchHHHHHHHHcCCCCEEEEEe---CC
Confidence            45666889999999999999888777443                111111  1457888899999999886554   21


Q ss_pred             CCCCCchHHHHHHHHHHHc-CCCchhh--hccccCCC---cccCCHHHHHH
Q 045960          160 FHATPGEPMLMVLKDMISE-GLAEESK--VKSFEDFP---IYRASVDEVKQ  204 (300)
Q Consensus       160 ~~~~~~~~l~~al~~mv~e-G~i~~e~--~d~f~~~P---~y~~s~eE~~~  204 (300)
                      .     +....++..+... +......  -+-. +-|   .+..|.-|-+.
T Consensus       136 ~-----~y~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~T~yE~k~  180 (195)
T PF02390_consen  136 E-----EYAEWMLEQFEESHPGFENIEESDDLH-ESPFDDDYIPTKYERKW  180 (195)
T ss_dssp             H-----HHHHHHHHHHHHHSTTEEEE-TESSGG-CSCCCTTCCSSHHHHHH
T ss_pred             H-----HHHHHHHHHHHhcCcCeEEcccCcccc-cCCCCCCCCCCHHHHHH
Confidence            1     4455666666552 3333221  1112 344   45666555543

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=87.92  E-value=1.8  Score=41.16  Aligned_cols=62  Identities=18%  Similarity=0.124  Sum_probs=36.5

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      -+.+-+--++++++|.++++--..--+..+.     .        ....-...+|+.-++-|+|||++++.+...
T Consensus       236 ~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~-----~--------~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       236 RGDATKLPLSSESVDAIATDPPYGRSTTAAG-----D--------GLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             ecchhcCCcccCCCCEEEECCCCcCcccccC-----C--------chHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence            3444432344678999998643322111110     0        011224677888888999999999988644

This family is found exclusively in the Archaea.

>PRK04457 spermidine synthase; Provisional

Probab=87.71  E-value=1.8  Score=40.06  Aligned_cols=25  Identities=28%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             HHHHHHHHHhhccCceeEEEEeecC
Q 045960          134 STFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus       134 ~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      ..|++.-.+-|+|||++++++.++.
T Consensus       157 ~efl~~~~~~L~pgGvlvin~~~~~  181 (262)
T PRK04457        157 QPFFDDCRNALSSDGIFVVNLWSRD  181 (262)
T ss_pred             HHHHHHHHHhcCCCcEEEEEcCCCc
Confidence            4667777777999999999876543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=86.81  E-value=1.5  Score=37.96  Aligned_cols=112  Identities=18%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.++||+.|--+|.+...        .       ..-.|+++|+|.     +...+..+-+.-... ..  .++-+..
T Consensus        47 ~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~-----~l~~l~~Ni~~N~~~-~~--~~v~v~~  103 (173)
T PF10294_consen   47 KRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE-----VLELLRRNIELNGSL-LD--GRVSVRP  103 (173)
T ss_dssp             SEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S------HHHHHHHHHHTT-----------EEEE
T ss_pred             ceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch-----hhHHHHHHHHhcccc-cc--ccccCcE
Confidence            47999999999888765443        0       135789999875     333333332111000 00  1222222


Q ss_pred             --cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           82 --SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        82 --vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                        .+.......++.+++|+++.+=++.+=+                      .+..+++.-.+=|+++|.+++...-|.
T Consensus       104 L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~----------------------~~~~L~~tl~~ll~~~~~vl~~~~~R~  160 (173)
T PF10294_consen  104 LDWGDELDSDLLEPHSFDVILASDVLYDEE----------------------LFEPLVRTLKRLLKPNGKVLLAYKRRR  160 (173)
T ss_dssp             --TTS-HHHHHHS-SSBSEEEEES--S-GG----------------------GHHHHHHHHHHHBTT-TTEEEEEE-S-
T ss_pred             EEecCcccccccccccCCEEEEecccchHH----------------------HHHHHHHHHHHHhCCCCEEEEEeCEec
Confidence              3333444556778999999999888722                      256667777788899999777776664

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=86.31  E-value=0.75  Score=43.41  Aligned_cols=53  Identities=17%  Similarity=0.152  Sum_probs=41.4

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      .+++.|+|...|.+.+||||.                   +.-=.+.|+--.+.|+|||.+.+..-+.....
T Consensus        98 p~~~~s~d~~lsiavihhlsT-------------------~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~  150 (293)
T KOG1331|consen   98 PFREESFDAALSIAVIHHLST-------------------RERRERALEELLRVLRPGGNALVYVWALEQHQ  150 (293)
T ss_pred             CCCCCccccchhhhhhhhhhh-------------------HHHHHHHHHHHHHHhcCCCceEEEEehhhccC
Confidence            478999999999999999987                   11123455667789999999999988775544

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=84.35  E-value=4.9  Score=36.03  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHhhccCceeEE
Q 045960          130 ESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus       130 ~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      ..|+..-|..+.++||+|-++|.
T Consensus       134 ~~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  134 DPDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             -HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             CHHHHHHHHHHHhcCCCCCEEEE
Confidence            44677778889999999987653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=84.02  E-value=1.6  Score=39.19  Aligned_cols=18  Identities=33%  Similarity=0.403  Sum_probs=13.5

Q ss_pred             eEEEeeCCCCCcccHHHH
Q 045960            2 IRFADLGCSSGPNALLPT   19 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~   19 (300)
                      -+|.|+||++|.+|-++-
T Consensus        74 ~~VLeIGtGsGY~aAlla   91 (209)
T PF01135_consen   74 DRVLEIGTGSGYQAALLA   91 (209)
T ss_dssp             -EEEEES-TTSHHHHHHH
T ss_pred             CEEEEecCCCcHHHHHHH
Confidence            379999999999987543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=83.59  E-value=2.8  Score=40.58  Aligned_cols=102  Identities=18%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|.||++|--|+.....            |.    -.|+--     |++.+..    ...++...++  +. --+-.+
T Consensus        63 ~VlDVGcGtGILS~F~akA------------GA----~~V~aV-----e~S~ia~----~a~~iv~~N~--~~-~ii~vi  114 (346)
T KOG1499|consen   63 TVLDVGCGTGILSMFAAKA------------GA----RKVYAV-----EASSIAD----FARKIVKDNG--LE-DVITVI  114 (346)
T ss_pred             EEEEcCCCccHHHHHHHHh------------Cc----ceEEEE-----echHHHH----HHHHHHHhcC--cc-ceEEEe
Confidence            6899999999888865432            21    122221     2333331    1122222222  12 244556


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      .|.=-+=.+|-..||++.|-|-=+||-.                   +.=+.+.|-+|-+=|+|||.++
T Consensus       115 ~gkvEdi~LP~eKVDiIvSEWMGy~Ll~-------------------EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  115 KGKVEDIELPVEKVDIIVSEWMGYFLLY-------------------ESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             ecceEEEecCccceeEEeehhhhHHHHH-------------------hhhhhhhhhhhhhccCCCceEc
Confidence            6666777889899999999988888654                   4447889999999999999985

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=80.28  E-value=8.7  Score=36.00  Aligned_cols=123  Identities=20%  Similarity=0.286  Sum_probs=71.6

Q ss_pred             CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHH-HHh-hhcCCC-CCce
Q 045960            1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYE-RLR-TEKGHE-FGSC   77 (300)
Q Consensus         1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~-~~~-~~~~~~-~~~~   77 (300)
                      .++|=--|||+|-=.-.+.-.+.+....      ..+..++|+-+|+   |=..|=+.-...++ .-. ...... ..+|
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDI---d~~~L~~A~~G~Y~~~~~~~~~~~~~~~ry  167 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDI---DLSVLEKARAGIYPSRELLRGLPPELLRRY  167 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEEC---CHHHHHHHhcCCCChhHhhccCCHHHHhhh
Confidence            3678889999997666555444444432      1234699999995   33444433222222 000 000000 1357


Q ss_pred             eeeecCCccc-------------cccC----CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q 045960           78 FVAASPGSFY-------------TRLF----PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFR  140 (300)
Q Consensus        78 f~~~vpgSFy-------------~~l~----P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~R  140 (300)
                      |.-+.+|+|-             ..|+    ..+-+|++||=+.|=.+.+                 .   .-.+.|+.=
T Consensus       168 F~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~-----------------~---~q~~il~~f  227 (268)
T COG1352         168 FERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE-----------------E---TQERILRRF  227 (268)
T ss_pred             EeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-----------------H---HHHHHHHHH
Confidence            7766666441             1122    3455899999888888766                 1   124556667


Q ss_pred             HHhhccCceeEE
Q 045960          141 SEELKSQGRMVL  152 (300)
Q Consensus       141 a~EL~~GG~~vl  152 (300)
                      +.-|+|||.|++
T Consensus       228 ~~~L~~gG~Lfl  239 (268)
T COG1352         228 ADSLKPGGLLFL  239 (268)
T ss_pred             HHHhCCCCEEEE
Confidence            889999999865

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=80.20  E-value=3  Score=33.97  Aligned_cols=43  Identities=19%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             ccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           96 LDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        96 v~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +|++.+.+...|+                -...-...+.+|++.-++-|+|||+|||.-
T Consensus         2 yDvilclSVtkWI----------------HLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    2 YDVILCLSVTKWI----------------HLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             EEEEEEES-HHHH----------------HHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             ccEEEEEEeeEEE----------------EecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            5888888888882                123345568999999999999999999986

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PLN02366 spermidine synthase

Probab=80.17  E-value=7.2  Score=37.18  Aligned_cols=66  Identities=11%  Similarity=0.017  Sum_probs=39.6

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV  171 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a  171 (300)
                      |++.+|++++-.+-+|   -|.        ...|.       ..|++.-.+-|+|||.|+.+... .  .. ..+.+..+
T Consensus       162 ~~~~yDvIi~D~~dp~---~~~--------~~L~t-------~ef~~~~~~~L~pgGvlv~q~~s-~--~~-~~~~~~~i  219 (308)
T PLN02366        162 PEGTYDAIIVDSSDPV---GPA--------QELFE-------KPFFESVARALRPGGVVCTQAES-M--WL-HMDLIEDL  219 (308)
T ss_pred             cCCCCCEEEEcCCCCC---Cch--------hhhhH-------HHHHHHHHHhcCCCcEEEECcCC-c--cc-chHHHHHH
Confidence            5678999998766555   121        11221       45666777889999999776421 1  10 01556666


Q ss_pred             HHHHHHcC
Q 045960          172 LKDMISEG  179 (300)
Q Consensus       172 l~~mv~eG  179 (300)
                      .+.|.+..
T Consensus       220 ~~tl~~~F  227 (308)
T PLN02366        220 IAICRETF  227 (308)
T ss_pred             HHHHHHHC
Confidence            66665554

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=80.05  E-value=23  Score=34.99  Aligned_cols=27  Identities=7%  Similarity=0.018  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960          128 QFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       128 q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +..+++..++..=.+=|+|||.+++..
T Consensus       313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        313 GACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            345677778777778899999987544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		4e-63
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		9e-63
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		2e-47
3b5i_A	374	Crystal Structure Of Indole-3-Acetic Acid Methyltra		5e-27

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score =  238 bits (606), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 139/323 (43%), Positives = 190/323 (58%), Gaps = 33/323 (10%)
Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHR----LNRKPPVLHSFLNDLPRSDFNTVF 56
           CI+ ADLGC+SGPN LL   + + S+DK+       L R  P +  FLNDL  +DFN+VF
Sbjct: 54  CIKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELER--PTIQIFLNDLFPNDFNSVF 111
Query: 57  KSLPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
           K LPSFY +L  E G + GSC + A PGSFY+RLFP   + F++S Y L WLS++P G  
Sbjct: 112 KLLPSFYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLV 171
Query: 115 ---------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND- 158
                          + +   V KA+L+QF  DF+TFL+  SEEL S GRM+LT +    
Sbjct: 172 TELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV 231
Query: 159 NFHATPGEPML-MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEV 217
              A     +L M + D++ EG  EE K+ SF + P+Y  S +EVK IV++EGSF+I  +
Sbjct: 232 ELDARNAIDLLEMAINDLVVEGHLEEEKLDSF-NLPVYIPSAEEVKCIVEEEGSFEILYL 290
Query: 218 ETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATK 277
           ETF V +  GF   +D    D++ + +YV   VRAV E  LA+ F +A + +I  RFA  
Sbjct: 291 ETFKVLYDAGF--SID----DEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKH 344
Query: 278 VTDVVLDKGRGAYASLLISLVKK 300
               VL  G+G Y +L+ISL KK
Sbjct: 345 AAK-VLPLGKGFYNNLIISLAKK 366

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score =  236 bits (603), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 133/328 (40%), Positives = 190/328 (57%), Gaps = 30/328 (9%)
Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK--PPVLHSFLNDLPRSDFNTVFKS 58
           C +  DLGC+SGPN      + + S+DK+      +   P +  FLNDL ++DFN+VFK 
Sbjct: 53  CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKL 112
Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG---- 114
           LPSFY  L  E G + GSC + A PGSFY+RLFP   + F++S Y LHWLS++P G    
Sbjct: 113 LPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172
Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY-NDNF 160
                        + +   + KA+L+QF  DF+TFL+  SEEL S+GRM+LT +   D F
Sbjct: 173 LGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEF 232
Query: 161 -HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
            H    + + M + D++ EG  EE K+ SF + PIY  S +EVK+IV++EGSF+I  +ET
Sbjct: 233 DHPNSMDLLEMSINDLVIEGHLEEEKLDSF-NVPIYAPSTEEVKRIVEEEGSFEILYLET 291
Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           FN  +  GF    D +G        D++AR  +V   VR++ E  LA+ F +A + ++  
Sbjct: 292 FNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSH 351
Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           R A      VL  G+G Y S++ISL KK
Sbjct: 352 RIAKNAAK-VLRSGKGFYDSVIISLAKK 378

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/317 (35%), Positives = 175/317 (55%), Gaps = 30/317 (9%)
Query: 2   IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK-PPVLHSFLNDLPRSDFNTVFKSLP 60
           +  ADLGCSSGPNAL    E I +++++  ++ R+  P    FLNDLP +DFN +F+SLP
Sbjct: 53  LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP 112
Query: 61  SFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-QGNES 119
                    +    G CF+   PGSFY RLFP N L F++SSY+L WLS++P G + N+ 
Sbjct: 113 I--------ENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKG 164
Query: 120 DVH----------KAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML 169
           +++           A+  QF+ D + FL+ R++E+   GRMVLT+L   +      E  L
Sbjct: 165 NIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCL 224
Query: 170 ------MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS 223
                 M L  M+SEGL EE K+  F + P Y  S  EV+  + KEGSF I  +E   + 
Sbjct: 225 IWQLLAMALNQMVSEGLIEEEKMDKF-NIPQYTPSPTEVEAEILKEGSFLIDHIEASEIY 283
Query: 224 WLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVL 283
           W     DG D  GS +   G  V + +RAV E  L + F +A ++++  R+   + +  +
Sbjct: 284 WSSCTKDG-DGGGSVE-EEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIE-RM 340
Query: 284 DKGRGAYASLLISLVKK 300
            K +  + ++++SL++K
Sbjct: 341 SKEKTKFINVIVSLIRK 357

>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 141/316 (44%), Gaps = 49/316 (15%)
Query: 6   DLGCSSGPNALLPTWEAIDSLDK-ICHRLNRK---PPVLHSFLNDLPRSDFNTVFKSLPS 61
           DLGCSSG N    T   ID + K I  R +     PP   +F +DLP +DFNT+F+ LP 
Sbjct: 58  DLGCSSGAN----TVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113
Query: 62  F-----YERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG-- 114
                  E      G+   S FVA  PGSFY RLFP   +DF +S+++LHWLS++P+   
Sbjct: 114 LVSNTCMEECLAADGNR--SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVT 171
Query: 115 --------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF 160
                          G       A+  QF++D + FL+ R+ E+K  G M L  L   + 
Sbjct: 172 DRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSV 231
Query: 161 HAT--PGEPMLM------VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSF 212
             T   G  +L          D++ EGL    K   F + P+Y  S+ + K++V   GSF
Sbjct: 232 DPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGF-NIPVYAPSLQDFKEVVDANGSF 290
Query: 213 DIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVG----ESFLANLFDDATVD 268
            I ++  +      G    V N+  D    G+      R+V     E+ +     +    
Sbjct: 291 AIDKLVVYK-----GGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFS 345
Query: 269 EIHRRFATKVTDVVLD 284
            +  R  +   DV+++
Sbjct: 346 RVESRATSHAKDVLVN 361

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	3e-80
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	5e-77
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	6e-74
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score =  247 bits (630), Expect = 3e-80
 Identities = 132/328 (40%), Positives = 189/328 (57%), Gaps = 30/328 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRL--NRKPPVLHSFLNDLPRSDFNTVFKS 58
           C +  DLGC+SGPN      + + S+DK+        + P +  FLNDL ++DFN+VFK 
Sbjct: 53  CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKL 112

Query: 59  LPSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNE 118
           LPSFY  L  E G + GSC + A PGSFY+RLFP   + F++S Y LHWLS++P G   E
Sbjct: 113 LPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172

Query: 119 S-----------------DVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161
                              + KA+L+QF  DF+TFL+  SEEL S+GRM+LT +  ++  
Sbjct: 173 LGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEF 232

Query: 162 ATPG--EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET 219
             P   + + M + D++ EG  EE K+ SF + PIY  S +EVK+IV++EGSF+I  +ET
Sbjct: 233 DHPNSMDLLEMSINDLVIEGHLEEEKLDSF-NVPIYAPSTEEVKRIVEEEGSFEILYLET 291

Query: 220 FNVSWLVGFVDGVDNKG-------SDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHR 272
           FN  +  GF    D +G        D++AR  +V   VR++ E  LA+ F +A + ++  
Sbjct: 292 FNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSH 351

Query: 273 RFATKVTDVVLDKGRGAYASLLISLVKK 300
           R A      VL  G+G Y S++ISL KK
Sbjct: 352 RIAKNAAK-VLRSGKGFYDSVIISLAKK 378

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score =  238 bits (609), Expect = 5e-77
 Identities = 86/327 (26%), Positives = 134/327 (40%), Gaps = 34/327 (10%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLP 60
                DLGCSSG N +      +  + K        PP   +F +DLP +DFNT+F+ LP
Sbjct: 53  PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112

Query: 61  SFYERLRTEK---GHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG--- 114
                   E+        S FVA  PGSFY RLFP   +DF +S+++LHWLS++P+    
Sbjct: 113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTD 172

Query: 115 -------------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL------ 155
                         G       A+  QF++D + FL+ R+ E+K  G M L  L      
Sbjct: 173 RRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVD 232

Query: 156 --YNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFD 213
                      G        D++ EGL    K   F + P+Y  S+ + K++V   GSF 
Sbjct: 233 PTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGF-NIPVYAPSLQDFKEVVDANGSFA 291

Query: 214 IQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRR 273
           I ++  +           V N+  D    G+      R+V    +     +   +++  R
Sbjct: 292 IDKLVVYKGGS-----PLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSR 346

Query: 274 FATKVTDVVLDKGRGA-YASLLISLVK 299
             ++ T    D      +  ++ SL  
Sbjct: 347 VESRATSHAKDVLVNLQFFHIVASLSF 373

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score =  230 bits (587), Expect = 6e-74
 Identities = 109/318 (34%), Positives = 166/318 (52%), Gaps = 30/318 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRK-PPVLHSFLNDLPRSDFNTVFKSL 59
            +  ADLGCSSGPNAL    E I +++++  ++ R+  P    FLNDLP +DFN +F+SL
Sbjct: 52  RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL 111

Query: 60  PSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPK------ 113
           P   +          G CF+   PGSFY RLFP N L F++SSY+L WLS++P       
Sbjct: 112 PIENDV--------DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNK 163

Query: 114 -----GQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPM 168
                       V  A+  QF+ D + FL+ R++E+   GRMVLT+L   +      E  
Sbjct: 164 GNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECC 223

Query: 169 LM------VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV 222
           L+       L  M+SEGL EE K+  F + P Y  S  EV+  + KEGSF I  +E   +
Sbjct: 224 LIWQLLAMALNQMVSEGLIEEEKMDKF-NIPQYTPSPTEVEAEILKEGSFLIDHIEASEI 282

Query: 223 SWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVV 282
            W     D   + G      G  V + +RAV E  L + F +A ++++  R+   + +  
Sbjct: 283 YWSSCTKD--GDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIE-R 339

Query: 283 LDKGRGAYASLLISLVKK 300
           + K +  + ++++SL++K
Sbjct: 340 MSKEKTKFINVIVSLIRK 357

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 45/323 (13%), Positives = 94/323 (29%), Gaps = 96/323 (29%)

Query: 2   IRFADL---GCSSGPNAL----------LPTWEAIDSLDKICHRLNRKPPVLHSFLNDLP 48
            R  DL     ++ P  L          L TW+    ++  C +L     ++ S LN L 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN--CDKLTT---IIESSLNVLE 367

Query: 49  RSDFNTVFKSLPSF----------YERLRTEKGHEFGSCFVAASPGSFYTR-LFPHNFLD 97
            +++  +F  L  F             +  +         V       +   L      +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKE 423

Query: 98  FVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN 157
              S  +++   ++     NE  +H++ ++ +         F S++        L   Y 
Sbjct: 424 STISIPSIYLELKVK--LENEYALHRSIVDHYN----IPKTFDSDD--------LIPPYL 469

Query: 158 DN-------FHATPGEP------MLMVLKD-------MISEGLAEE---SKVKSFEDFPI 194
           D         H    E         MV  D       +  +  A     S + + +    
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 195 YRASVDEVKQIVKKEGSFD--IQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRA 252
           Y+        I   +  ++  +  +  F                  K       +K+   
Sbjct: 530 YK------PYICDNDPKYERLVNAILDF----------------LPKIEENLICSKYTDL 567

Query: 253 VGESFLANLFDDATVDEIHRRFA 275
           +  + +A   D+A  +E H++  
Sbjct: 568 LRIALMAE--DEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 57/227 (25%)

Query: 13  PNALLPT-W------EAIDSLDKICHR---LNRKPPVLHSFLNDL------PRSDFNTVF 56
           P  LL   W      + +  ++K  H+   + ++P      +  +         +   + 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 57  KSLPSFYERLRTEKGHEFGSCFVAASPGSFY---------------TRLFPHNFLDFVYS 101
           +S+   Y      K  +            FY                 LF   FLDF   
Sbjct: 447 RSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--- 500

Query: 102 SYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH 161
                +L +  +      +   + LN        +  +  +      R+V  +L   +F 
Sbjct: 501 ----RFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAIL---DFL 552

Query: 162 ATPGEPMLMV-LKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVK 207
               E ++     D++   L         ED  I+    +  KQ+ +
Sbjct: 553 PKIEENLICSKYTDLLRIAL-------MAEDEAIFE---EAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	100.0
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	100.0
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	100.0
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.38
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.34
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.22
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.09
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.03
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.0
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.99
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.95
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.94
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.9
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.86
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.86
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.84
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.82
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.81
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.77
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.76
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.76
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.75
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.73
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.7
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.7
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.68
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.68
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.68
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.67
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.67
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.65
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.63
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.57
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.56
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.56
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.54
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.54
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.54
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.53
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.51
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.51
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.51
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.5
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.49
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.47
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.45
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.43
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.43
3ocj_A	305	Putative exported protein; structural genomics, PS	98.4
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.4
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.39
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.39
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.38
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.38
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.37
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.37
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.36
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.36
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.36
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.35
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.35
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.35
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.31
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.31
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.3
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.3
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.3
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.29
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.29
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.29
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.27
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.26
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.25
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.24
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.21
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.18
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.18
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.17
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.17
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.17
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.15
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.15
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.13
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.12
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.12
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.1
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.09
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.09
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.09
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.08
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.07
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.07
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.06
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.92
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	97.9
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.87
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.84
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.81
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.75
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.68
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.62
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.61
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.57
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.53
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.53
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.51
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.49
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.46
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.39
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.38
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.37
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.37
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.36
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.34
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.34
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.29
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.27
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.24
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.24
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.23
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.23
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.16
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.12
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.12
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.12
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.1
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.08
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.06
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.05
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.03
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.01
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.99
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.99
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.98
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.98
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	96.97
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.96
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.95
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.86
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	96.84
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.81
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.8
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	96.75
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	96.68
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.67
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.65
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.63
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.61
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.59
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.58
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	96.57
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.55
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.55
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	96.54
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.51
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	96.5
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.5
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.48
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.47
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.45
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.45
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.37
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.34
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	96.34
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.32
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.26
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	96.22
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.21
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.21
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.17
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.17
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	96.17
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.16
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.13
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.13
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.11
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.08
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.08
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.07
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	96.06
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.0
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	95.98
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	95.98
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.96
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	95.96
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	95.95
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	95.94
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.92
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.92
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	95.9
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	95.83
2esr_A	177	Methyltransferase; structural genomics, hypothetic	95.81
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.76
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	95.61
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.57
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.49
3sso_A	419	Methyltransferase; macrolide, natural product, ros	95.43
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.41
2frn_A	278	Hypothetical protein PH0793; structural genomics,	95.34
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	95.34
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	95.3
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	95.17
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	95.13
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	95.12
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	95.09
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	94.97
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	94.96
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	94.86
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	94.85
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	94.58
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	94.52
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	94.48
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	94.46
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	94.31
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	94.19
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	94.1
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	94.08
2o07_A	304	Spermidine synthase; structural genomics, structur	94.06
2pt6_A	321	Spermidine synthase; transferase, structural genom	94.04
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	94.02
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	93.97
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	93.79
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	93.78
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	93.69
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	93.65
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	93.64
2i7c_A	283	Spermidine synthase; transferase, structural genom	93.47
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	93.33
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	93.15
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	92.76
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	92.01
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	91.88
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	91.64
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	91.53
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	91.49
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	91.49
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	91.07
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	90.96
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	90.43
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	87.55
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	85.37
3lkd_A	542	Type I restriction-modification system methyltrans	85.21
2qm3_A	373	Predicted methyltransferase; putative methyltransf	84.42
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	83.79
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	83.36

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=100.00  E-value=6.3e-86  Score=636.69  Aligned_cols=297  Identities=43%  Similarity=0.771  Sum_probs=264.5

Q ss_pred             CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHh--cCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCcee
Q 045960            1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHR--LNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCF   78 (300)
Q Consensus         1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~--~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f   78 (300)
                      +++|||||||+|+||+.+++.||++|+++|.+  .++++|+|||||||||+||||+||++||.+++++.++.+.++++||
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            48999999999999999999999999999865  4556789999999999999999999999999988777777778999


Q ss_pred             eeecCCccccccCCCCcccEEEeccccccccCCCCCCC-------C----------CHHHHHHHHHhHHHHHHHHHHHHH
Q 045960           79 VAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQG-------N----------ESDVHKAFLNQFESDFSTFLKFRS  141 (300)
Q Consensus        79 ~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~-------n----------~~~v~~ay~~q~~~D~~~fL~~Ra  141 (300)
                      ++|||||||+||||++|+|+|||++||||||++|+.+.       |          |++|.++|++||++||.+||++|+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998765       2          788999999999999999999999


Q ss_pred             HhhccCceeEEEEeecCCC--CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          142 EELKSQGRMVLTLLYNDNF--HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       142 ~EL~~GG~~vl~~~g~~~~--~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      +||||||+||++++|+++.  ++.+++.+.++|++||.+|+|+++++|+| |+|+|+||++|++++|+++|+|+|+++|+
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf-~~P~y~ps~~E~~~~le~~g~F~i~~le~  291 (384)
T 2efj_A          213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSF-NVPIYAPSTEEVKRIVEEEGSFEILYLET  291 (384)
T ss_dssp             HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTC-CCSBCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred             HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhccc-CCcccCCCHHHHHHHHHHcCCceEEEEEE
Confidence            9999999999999999997  66655689999999999999999999999 99999999999999999999999999999


Q ss_pred             EeecccCCc---cCCC---CCCCC--cccchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeE
Q 045960          220 FNVSWLVGF---VDGV---DNKGS--DKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYA  291 (300)
Q Consensus       220 ~~~~~~~~~---~~~~---~~~~~--d~~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~  291 (300)
                      ++.+|++ +   ++..   .+...  |....|+.+++++||++||+|.+|||++++|+||+||+++++++ ++.++.+++
T Consensus       292 ~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~iRa~~epll~~hfG~~i~d~lF~ry~~~~~~~-~~~~~~~~~  369 (384)
T 2efj_A          292 FNAPYDA-GFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNAAKV-LRSGKGFYD  369 (384)
T ss_dssp             EEEETTT-TCCC---------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHH-HHHTCCEEE
T ss_pred             Eeecccc-cccccccccccccccccchHhHhHHHhhhhhHHhhhhhhHHhccHHHHHHHHHHHHHHHHHH-HhhCCCceE
Confidence            9999987 3   2210   00000  24578899999999999999999999999999999999999999 888999999


Q ss_pred             EEEEEEeeC
Q 045960          292 SLLISLVKK  300 (300)
Q Consensus       292 ~~~~~l~r~  300 (300)
                      +++++|+||
T Consensus       370 ~~~~~L~k~  378 (384)
T 2efj_A          370 SVIISLAKK  378 (384)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEc
Confidence            999999997

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=100.00  E-value=4.7e-86  Score=632.88  Aligned_cols=288  Identities=38%  Similarity=0.693  Sum_probs=264.4

Q ss_pred             CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceee
Q 045960            1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNR-KPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFV   79 (300)
Q Consensus         1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~-~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~   79 (300)
                      +++|||||||+|+||+.+++.||++|+++|.+.++ ++|+|||||||||+||||+||++|+.+.    +   .+ ++||+
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~----~---~~-~~~f~  123 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----D---VD-GVCFI  123 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----S---CT-TCEEE
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc----c---cC-CCEEE
Confidence            48999999999999999999999999999987776 6889999999999999999999999874    1   11 57999


Q ss_pred             eecCCccccccCCCCcccEEEeccccccccCCCCCCCC-----------CHHHHHHHHHhHHHHHHHHHHHHHHhhccCc
Q 045960           80 AASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGN-----------ESDVHKAFLNQFESDFSTFLKFRSEELKSQG  148 (300)
Q Consensus        80 ~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n-----------~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG  148 (300)
                      +|||||||+||||++|+|+||||+||||||++|+.+.+           |++|.++|++||++||.+||++|++||||||
T Consensus       124 ~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG  203 (359)
T 1m6e_X          124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG  203 (359)
T ss_dssp             EEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred             EecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999988762           7889999999999999999999999999999


Q ss_pred             eeEEEEeecCCCCCCCc------hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          149 RMVLTLLYNDNFHATPG------EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       149 ~~vl~~~g~~~~~~~~~------~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                      +||++++|+++.+++++      +.|.++|++||.+|+|++|++|+| |+|+|+||++|++++|+++|+|+|+++|+++.
T Consensus       204 ~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f-~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~  282 (359)
T 1m6e_X          204 RMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKF-NIPQYTPSPTEVEAEILKEGSFLIDHIEASEI  282 (359)
T ss_dssp             EEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGG-CCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEE
T ss_pred             eEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhcc-CCCccCCCHHHHHHHHHHcCCceEEEEEEEee
Confidence            99999999999876543      799999999999999999999999 99999999999999999999999999999999


Q ss_pred             cccCCccCCCCCCCCcccchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeEEEEEEEeeC
Q 045960          223 SWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK  300 (300)
Q Consensus       223 ~~~~~~~~~~~~~~~d~~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~l~r~  300 (300)
                      .|++ ++++ .+...|....|+.+++++||++||+|.+|||++++|+||+||+++++++ ++.++.++++++++|+||
T Consensus       283 ~~~~-~~~~-~d~~~~~~~~g~~~a~~~Ra~~e~ll~~hfG~~i~d~lf~ry~~~~~~~-~~~~~~~~~~~~~~L~k~  357 (359)
T 1m6e_X          283 YWSS-CTKD-GDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIRK  357 (359)
T ss_dssp             ETTC-CSSC-TTCCSSTTTTTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHSSCCEEEEEEEEEEBC
T ss_pred             ccCc-ccch-hhhhhhhhHhHhHhhhhhhhhcchhhHHhccHHHHHHHHHHHHHHHHHH-HhhCCCceEEEEEEEEeC
Confidence            9988 3332 1111234678899999999999999999999999999999999999999 888999999999999997

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=100.00  E-value=3.5e-81  Score=602.43  Aligned_cols=291  Identities=28%  Similarity=0.475  Sum_probs=259.6

Q ss_pred             CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhh---hcCCCCCce
Q 045960            1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRT---EKGHEFGSC   77 (300)
Q Consensus         1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~---~~~~~~~~~   77 (300)
                      +++|||||||+|+||+.+++.||++|+++|.+.+.++|+|||||||||+||||+||++|+.+++++..   ..+...++|
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            48999999999999999999999999999988887889999999999999999999999998654321   112233689


Q ss_pred             eeeecCCccccccCCCCcccEEEeccccccccCCCCCCC-------C---------CHHHHHHHHHhHHHHHHHHHHHHH
Q 045960           78 FVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQG-------N---------ESDVHKAFLNQFESDFSTFLKFRS  141 (300)
Q Consensus        78 f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~-------n---------~~~v~~ay~~q~~~D~~~fL~~Ra  141 (300)
                      |++|||||||+||||++|+|+|||++||||||++|+.+.       |         +|.|.+||++||++||..||++|+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999997663       2         445999999999999999999999


Q ss_pred             HhhccCceeEEEEeecCCCCCCCc--------hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCee
Q 045960          142 EELKSQGRMVLTLLYNDNFHATPG--------EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFD  213 (300)
Q Consensus       142 ~EL~~GG~~vl~~~g~~~~~~~~~--------~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~  213 (300)
                      +||||||+||++++|+++.+++++        +.|.++|++|+.||+|+++++|+| ++|+|+||++|++.+|+++|+|+
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f-~~P~y~ps~~E~~~~l~~~~~F~  291 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGF-NIPVYAPSLQDFKEVVDANGSFA  291 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSC-CCCBCCCCHHHHHHHHHHHCSEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccC-CccccCCCHHHHHHHHHhcCCcE
Confidence            999999999999999998876653        469999999999999999999999 99999999999999999888999


Q ss_pred             EEEEEEEeecccCCccCCCCCCCCcccchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhh--cCCCC--
Q 045960          214 IQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLD--KGRGA--  289 (300)
Q Consensus       214 I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~--~~~~~--  289 (300)
                      |+++|+++.+|+.. .+..    .+....|+.+++++||++||+|.+|||++++|+||+||+++++++ ++  +++.+  
T Consensus       292 I~~le~~~~~~~~~-~~~~----~~~~~~g~~~a~~~Ra~~e~ll~~hfg~~i~d~lf~ry~~~~~~~-~~~~~~~~~~~  365 (374)
T 3b5i_A          292 IDKLVVYKGGSPLV-VNEP----DDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRATSH-AKDVLVNLQFF  365 (374)
T ss_dssp             EEEEEEEECCCCCC-CSST----TCHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT-CHHHHTTCCCE
T ss_pred             EEEEEEEeecCCcc-cccc----chhHHHHHHHHHHHHHhccchhHhhccHHHHHHHHHHHHHHHHHh-HHHhhhccccc
Confidence            99999999999873 2221    145678999999999999999999999999999999999999999 66  66667  


Q ss_pred             eEEEEEEEe
Q 045960          290 YASLLISLV  298 (300)
Q Consensus       290 ~~~~~~~l~  298 (300)
                      +++++++|+
T Consensus       366 ~~~~~~~l~  374 (374)
T 3b5i_A          366 HIVASLSFT  374 (374)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEeC
Confidence            899999885

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=4.9e-11  Score=107.95  Aligned_cols=143  Identities=22%  Similarity=0.315  Sum_probs=103.0

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV  171 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a  171 (300)
                      +++++|+|+|+.++||+..                      ...+|+.-++-|+|||++++...+.++.     ..+...
T Consensus       114 ~~~~fD~v~~~~~l~~~~d----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~  166 (279)
T 3ccf_A          114 VDKPLDAVFSNAMLHWVKE----------------------PEAAIASIHQALKSGGRFVAEFGGKGNI-----KYILEA  166 (279)
T ss_dssp             CSSCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEECTTTT-----HHHHHH
T ss_pred             cCCCcCEEEEcchhhhCcC----------------------HHHHHHHHHHhcCCCcEEEEEecCCcch-----HHHHHH
Confidence            3579999999999999654                      4567788889999999999998765432     223344


Q ss_pred             HHHHHHc-CCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccchHHHHHHHH
Q 045960          172 LKDMISE-GLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGKYVTKHV  250 (300)
Q Consensus       172 l~~mv~e-G~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~~i  250 (300)
                      +.+...+ |.-    .... ..|+++++.++++.++++.| |++.+++.+..++..  .           ...+.+..|+
T Consensus       167 ~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~--~-----------~~~~~~~~~l  227 (279)
T 3ccf_A          167 LYNALETLGIH----NPQA-LNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTL--A-----------EGEFGMANWI  227 (279)
T ss_dssp             HHHHHHHHTCC----CGGG-GCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEEC--S-----------SGGGHHHHHH
T ss_pred             HHHHHHhcCCc----cccC-cCceeCCCHHHHHHHHHHcC-CEEEEEEEecccccc--c-----------CCHHHHHHHH
Confidence            4433322 321    2345 56788999999999999999 999988887655322  0           0134677888


Q ss_pred             HHhhhhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960          251 RAVGESFLANLFDDATVDEIHRRFATKVTDV  281 (300)
Q Consensus       251 RA~~ep~l~~hfge~i~delf~r~~~~~~~~  281 (300)
                      +++..+++.. ++++..+++.+++.+.+.+.
T Consensus       228 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  257 (279)
T 3ccf_A          228 QMFASAFLVG-LTPDQQVQLIRKVEATLQDK  257 (279)
T ss_dssp             HHHCHHHHTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHhcc-CCHHHHHHHHHHHHHHHHhh
Confidence            8877666654 77788888888888887765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.34  E-value=7.3e-11  Score=104.70  Aligned_cols=200  Identities=15%  Similarity=0.170  Sum_probs=123.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..+..+....               |..+|+..|+-.+--           +.. ++...  +--|   +
T Consensus        36 ~vLdiG~G~G~~~~~l~~~~---------------~~~~v~~~D~s~~~~-----------~~a-~~~~~--~~~~---~   83 (259)
T 2p35_A           36 NGYDLGCGPGNSTELLTDRY---------------GVNVITGIDSDDDML-----------EKA-ADRLP--NTNF---G   83 (259)
T ss_dssp             SEEEETCTTTHHHHHHHHHH---------------CTTSEEEEESCHHHH-----------HHH-HHHST--TSEE---E
T ss_pred             EEEEecCcCCHHHHHHHHhC---------------CCCEEEEEECCHHHH-----------HHH-HHhCC--CcEE---E
Confidence            69999999999887554321               124566666422100           000 11110  1122   2


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      .+.+.. +-|++++|+|+|+.++||+..                      ...+|+.-.+-|+|||++++...+...   
T Consensus        84 ~~d~~~-~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~---  137 (259)
T 2p35_A           84 KADLAT-WKPAQKADLLYANAVFQWVPD----------------------HLAVLSQLMDQLESGGVLAVQMPDNLQ---  137 (259)
T ss_dssp             ECCTTT-CCCSSCEEEEEEESCGGGSTT----------------------HHHHHHHHGGGEEEEEEEEEEEECCTT---
T ss_pred             ECChhh-cCccCCcCEEEEeCchhhCCC----------------------HHHHHHHHHHhcCCCeEEEEEeCCCCC---
Confidence            234433 227889999999999999643                      567888889999999999999865432   


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccch
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYAR  242 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~  242 (300)
                         ......+.++...+.+........ ..+..+++.+++++++++.| |+++..+..... .              ...
T Consensus       138 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~-~--------------~~~  197 (259)
T 2p35_A          138 ---EPTHIAMHETADGGPWKDAFSGGG-LRRKPLPPPSDYFNALSPKS-SRVDVWHTVYNH-P--------------MKD  197 (259)
T ss_dssp             ---SHHHHHHHHHHHHSTTGGGC--------CCCCCHHHHHHHHGGGE-EEEEEEEEEEEE-E--------------ESC
T ss_pred             ---cHHHHHHHHHhcCcchHHHhcccc-ccccCCCCHHHHHHHHHhcC-CceEEEEEEeee-c--------------cCC
Confidence               223445566555443332211112 23567789999999999999 887655433111 0              112


Q ss_pred             HHHHHHHHHHhh-hhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960          243 GKYVTKHVRAVG-ESFLANLFDDATVDEIHRRFATKVTDV  281 (300)
Q Consensus       243 ~~~~a~~iRA~~-ep~l~~hfge~i~delf~r~~~~~~~~  281 (300)
                      ...+..|+++.. .+++. .++++..+++.+++.+.+.+.
T Consensus       198 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  236 (259)
T 2p35_A          198 ADSIVEWVKGTGLRPYLA-AAGEENREAFLADYTRRIAAA  236 (259)
T ss_dssp             HHHHHHHHTTTTTTHHHH-TTCGGGHHHHHHHHHHHHHHH
T ss_pred             chHHhhhhhcCcchHHHH-hCCHHHHHHHHHHHHHHHHHh
Confidence            557778888764 34443 588888888888888888765

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.22  E-value=5.3e-10  Score=99.17  Aligned_cols=218  Identities=13%  Similarity=0.121  Sum_probs=129.5

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...                 ..+|+..|.-.+-- ...+      ... .  + ...++  ..
T Consensus        41 ~~vLDiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~~~~-~~a~------~~~-~--~-~~~~~--~~   90 (263)
T 2yqz_A           41 PVFLELGVGTGRIALPLIAR-----------------GYRYIALDADAAML-EVFR------QKI-A--G-VDRKV--QV   90 (263)
T ss_dssp             CEEEEETCTTSTTHHHHHTT-----------------TCEEEEEESCHHHH-HHHH------HHT-T--T-SCTTE--EE
T ss_pred             CEEEEeCCcCCHHHHHHHHC-----------------CCEEEEEECCHHHH-HHHH------HHh-h--c-cCCce--EE
Confidence            37999999999998765421                 13566666421110 0100      000 0  0 01122  22


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+++..--+|++++|+|+++.++||+..                      ...+|+.-.+-|+|||++++.+...+ ..
T Consensus        91 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~~~~~~~~-~~  147 (263)
T 2yqz_A           91 VQADARAIPLPDESVHGVIVVHLWHLVPD----------------------WPKVLAEAIRVLKPGGALLEGWDQAE-AS  147 (263)
T ss_dssp             EESCTTSCCSCTTCEEEEEEESCGGGCTT----------------------HHHHHHHHHHHEEEEEEEEEEEEEEC-CC
T ss_pred             EEcccccCCCCCCCeeEEEECCchhhcCC----------------------HHHHHHHHHHHCCCCcEEEEEecCCC-cc
Confidence            33445443478899999999999999654                      45677778889999999999954432 11


Q ss_pred             CCCchHHHHHHHHHHHc-CCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCccc
Q 045960          162 ATPGEPMLMVLKDMISE-GLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKY  240 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~e-G~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~  240 (300)
                      .  ...+...+.++... |.       .. .-+.+.++.+++.+++++.| |++...+...  |..             .
T Consensus       148 ~--~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~--~~~-------------~  201 (263)
T 2yqz_A          148 P--EWTLQERWRAFAAEEGF-------PV-ERGLHAKRLKEVEEALRRLG-LKPRTREVAR--WRE-------------E  201 (263)
T ss_dssp             H--HHHHHHHHHHHHHHHTC-------CC-CCCHHHHHHHHHHHHHHHTT-CCCEEEEEEE--EEE-------------E
T ss_pred             H--HHHHHHHHHHHHHHhCC-------Cc-ccccccCCHHHHHHHHHHcC-CCcceEEEee--eec-------------C
Confidence            0  01133444443322 21       01 22456778999999999999 9987766553  322             1


Q ss_pred             chHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCC---CeEEEEEEEeeC
Q 045960          241 ARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRG---AYASLLISLVKK  300 (300)
Q Consensus       241 ~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~~---~~~~~~~~l~r~  300 (300)
                      ...+.+..++++.+.+.+ .+++++..+++.+++.+.+.+. ......   -+..+++...||
T Consensus       202 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~rk  262 (263)
T 2yqz_A          202 RTPREALEALSERLYSFT-QGLPEPVHARVMERLWAWAEAE-LGDLDRPFPVEKRFLLRVSRL  262 (263)
T ss_dssp             ECHHHHHHHHHTTCSGGG-SSSCHHHHHHHHHHHHHHHHHH-SSCTTSCEEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHhhcccc-cCCCHHHHHHHHHHHHHHHHHh-cCCcCccccccceeEEEeeec
Confidence            124566777776655554 3477888888888888888776 332211   234555555554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.09  E-value=1.6e-08  Score=90.50  Aligned_cols=142  Identities=10%  Similarity=0.032  Sum_probs=90.5

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+++..--+|++++|+|+|+.++||+..                      ...+|+.-.+-|+|||++++......+..
T Consensus       116 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~  173 (273)
T 3bus_A          116 SYADAMDLPFEDASFDAVWALESLHHMPD----------------------RGRALREMARVLRPGGTVAIADFVLLAPV  173 (273)
T ss_dssp             EECCTTSCCSCTTCEEEEEEESCTTTSSC----------------------HHHHHHHHHTTEEEEEEEEEEEEEESSCC
T ss_pred             EECccccCCCCCCCccEEEEechhhhCCC----------------------HHHHHHHHHHHcCCCeEEEEEEeeccCCC
Confidence            34555554478899999999999999644                      35778888899999999999987765422


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccc
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYA  241 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~  241 (300)
                      .   ......+..+.          ..+  -..+.++.+++.+++++.| |++.+++.+...+..               
T Consensus       174 ~---~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~---------------  222 (273)
T 3bus_A          174 E---GAKKEAVDAFR----------AGG--GVLSLGGIDEYESDVRQAE-LVVTSTVDISAQARP---------------  222 (273)
T ss_dssp             C---HHHHHHHHHHH----------HHH--TCCCCCCHHHHHHHHHHTT-CEEEEEEECHHHHTT---------------
T ss_pred             C---hhHHHHHHHHH----------hhc--CccCCCCHHHHHHHHHHcC-CeEEEEEECcHhHHH---------------
Confidence            1   22222222221          112  1235689999999999999 999888776433111               


Q ss_pred             hHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHH
Q 045960          242 RGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATK  277 (300)
Q Consensus       242 ~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~  277 (300)
                      .-..+...+++.... +...+|++..+.+.+.+...
T Consensus       223 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  257 (273)
T 3bus_A          223 SLVKTAEAFENARSQ-VEPFMGAEGLDRMIATFRGL  257 (273)
T ss_dssp             HHHHHHHHHHHTHHH-HHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHH-HHhhcCHHHHHHHHHHHHHH
Confidence            112333333333333 34557887777776666653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.03  E-value=5.2e-08  Score=86.18  Aligned_cols=208  Identities=16%  Similarity=0.154  Sum_probs=119.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+...            +   + -+|+.-|+-.. .-...      ...... .+.. .++  ..+
T Consensus        49 ~vLDiG~G~G~~~~~l~~~------------~---~-~~v~~vD~s~~-~~~~a------~~~~~~-~~~~-~~~--~~~  101 (257)
T 3f4k_A           49 KIADIGCGTGGQTLFLADY------------V---K-GQITGIDLFPD-FIEIF------NENAVK-ANCA-DRV--KGI  101 (257)
T ss_dssp             EEEEETCTTSHHHHHHHHH------------C---C-SEEEEEESCHH-HHHHH------HHHHHH-TTCT-TTE--EEE
T ss_pred             eEEEeCCCCCHHHHHHHHh------------C---C-CeEEEEECCHH-HHHHH------HHHHHH-cCCC-Cce--EEE
Confidence            7999999999987755432            1   2 16666664211 00000      111111 1110 112  123


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+++..--+|++++|+|+++.++||+ .                      ...+|+.-.+-|+|||++++..........
T Consensus       102 ~~d~~~~~~~~~~fD~v~~~~~l~~~-~----------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~  158 (257)
T 3f4k_A          102 TGSMDNLPFQNEELDLIWSEGAIYNI-G----------------------FERGMNEWSKYLKKGGFIAVSEASWFTSER  158 (257)
T ss_dssp             ECCTTSCSSCTTCEEEEEEESCSCCC-C----------------------HHHHHHHHHTTEEEEEEEEEEEEEESSSCC
T ss_pred             ECChhhCCCCCCCEEEEEecChHhhc-C----------------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCC
Confidence            34443334678999999999999996 2                      356777788999999999999876433221


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec-ccCCccCCCCCCCCcccc
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS-WLVGFVDGVDNKGSDKYA  241 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~-~~~~~~~~~~~~~~d~~~  241 (300)
                      .  ..+...|..                ..|. .++.+++...+++.| |++.....+... |...              
T Consensus       159 ~--~~~~~~~~~----------------~~~~-~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w~~~--------------  204 (257)
T 3f4k_A          159 P--AEIEDFWMD----------------AYPE-ISVIPTCIDKMERAG-YTPTAHFILPENCWTEH--------------  204 (257)
T ss_dssp             C--HHHHHHHHH----------------HCTT-CCBHHHHHHHHHHTT-EEEEEEEECCGGGTCCC--------------
T ss_pred             h--HHHHHHHHH----------------hCCC-CCCHHHHHHHHHHCC-CeEEEEEECChhhHHHH--------------
Confidence            1  233333432                1121 468999999999999 998886655332 5321              


Q ss_pred             hHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeEEEEEEEeeC
Q 045960          242 RGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK  300 (300)
Q Consensus       242 ~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~l~r~  300 (300)
                          +...++...+.+...+-++...+++.++..+....+  ......+--.+++++|+
T Consensus       205 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~v~~k~  257 (257)
T 3f4k_A          205 ----YFAPQDEVRETFMKEHAGNKTAMDFMKGQQYERSLY--SKYKDYYGYVFYIGQKR  257 (257)
T ss_dssp             ----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HHHTTTEEEEEEEEEEC
T ss_pred             ----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--HHhCCccceEEEEEecC
Confidence                111122333344445555566666666666555543  23344556667777764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.00  E-value=1.2e-07  Score=86.60  Aligned_cols=155  Identities=14%  Similarity=0.117  Sum_probs=93.7

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ++++|+|+|+.++|++.+.       +.+      +-.+++..+|+.-.+-|+|||++++...+..+..         ..
T Consensus       135 ~~~fD~v~~~~~~~~~~d~-------~~~------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~  192 (302)
T 3hem_A          135 DEPVDRIVSLGAFEHFADG-------AGD------AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE---------EA  192 (302)
T ss_dssp             CCCCSEEEEESCGGGTTCC-------SSC------CCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH---------HH
T ss_pred             CCCccEEEEcchHHhcCcc-------ccc------cchhHHHHHHHHHHHhcCCCcEEEEEEEeccCcc---------ch
Confidence            7899999999999996542       000      0024577888889999999999999988765421         00


Q ss_pred             HHHHHcCC-Cch------hhhccccCCCc-ccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccchHH
Q 045960          173 KDMISEGL-AEE------SKVKSFEDFPI-YRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYARGK  244 (300)
Q Consensus       173 ~~mv~eG~-i~~------e~~d~f~~~P~-y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~  244 (300)
                      .   ..|. +..      +-+... .+|. +.|+++|+...+++.| |++.+++.+...                  +++
T Consensus       193 ~---~~~~~~~~~~~~~~~~~~~~-~~p~~~~~s~~~~~~~l~~aG-f~~~~~~~~~~~------------------y~~  249 (302)
T 3hem_A          193 Q---ELGLTSPMSLLRFIKFILTE-IFPGGRLPRISQVDYYSSNAG-WKVERYHRIGAN------------------YVP  249 (302)
T ss_dssp             H---HHTCCCCHHHHHHHHHHHHH-TCTTCCCCCHHHHHHHHHHHT-CEEEEEEECGGG------------------HHH
T ss_pred             h---hccccccccccchHHHHHHh-cCCCCCCCCHHHHHHHHHhCC-cEEEEEEeCchh------------------HHH
Confidence            0   0110 000      111223 3554 7899999999999999 999888765322                  233


Q ss_pred             HHHHHHHHhhh--hHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeEEEE
Q 045960          245 YVTKHVRAVGE--SFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLL  294 (300)
Q Consensus       245 ~~a~~iRA~~e--p~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~~~~  294 (300)
                      .+..|.+.+-.  +-+.+.+|++..+ .++.|-.-.+.- .+........++
T Consensus       250 tl~~w~~~~~~~~~~~~~~~~~~~~~-~w~~yl~~~~~~-f~~~~~~~~q~~  299 (302)
T 3hem_A          250 TLNAWADALQAHKDEAIALKGQETCD-IYMHYLRGCSDL-FRDKYTDVCQFT  299 (302)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHCHHHHH-HHHHHHHHHHHH-HHTTSSEEEEEE
T ss_pred             HHHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHHHH-HhCCCCeEEEEE
Confidence            33334333222  2233447766554 577776666666 555555444433

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.99  E-value=1.4e-08  Score=89.83  Aligned_cols=192  Identities=17%  Similarity=0.228  Sum_probs=112.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+....           +     .+|+.-|+-.+           ..+ ..++......++  ..
T Consensus        57 ~~vLdiG~G~G~~~~~l~~~~-----------~-----~~v~~vD~s~~-----------~~~-~a~~~~~~~~~~--~~  106 (266)
T 3ujc_A           57 SKVLDIGSGLGGGCMYINEKY-----------G-----AHTHGIDICSN-----------IVN-MANERVSGNNKI--IF  106 (266)
T ss_dssp             CEEEEETCTTSHHHHHHHHHH-----------C-----CEEEEEESCHH-----------HHH-HHHHTCCSCTTE--EE
T ss_pred             CEEEEECCCCCHHHHHHHHHc-----------C-----CEEEEEeCCHH-----------HHH-HHHHHhhcCCCe--EE
Confidence            379999999998887654421           1     35555554211           000 011111000111  12


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+++..--+|++++|+|+++.++||++                    ..|...+|+.-.+-|+|||++++.....+...
T Consensus       107 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~--------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  166 (266)
T 3ujc_A          107 EANDILTKEFPENNFDLIYSRDAILALS--------------------LENKNKLFQKCYKWLKPTGTLLITDYCATEKE  166 (266)
T ss_dssp             EECCTTTCCCCTTCEEEEEEESCGGGSC--------------------HHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG
T ss_pred             EECccccCCCCCCcEEEEeHHHHHHhcC--------------------hHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc
Confidence            3344444457889999999999999952                    24577888889999999999999988766522


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccCCccCCCCCCCCcccc
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLVGFVDGVDNKGSDKYA  241 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~~~~~~~~~~~~d~~~  241 (300)
                      ... ..+...+.    .             .....++.++++.++++.| |++.+.+.+...+                 
T Consensus       167 ~~~-~~~~~~~~----~-------------~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~-----------------  210 (266)
T 3ujc_A          167 NWD-DEFKEYVK----Q-------------RKYTLITVEEYADILTACN-FKNVVSKDLSDYW-----------------  210 (266)
T ss_dssp             GCC-HHHHHHHH----H-------------HTCCCCCHHHHHHHHHHTT-CEEEEEEECHHHH-----------------
T ss_pred             cch-HHHHHHHh----c-------------CCCCCCCHHHHHHHHHHcC-CeEEEEEeCCHHH-----------------
Confidence            222 22222211    1             1123568999999999999 9988776553221                 


Q ss_pred             hHHHHHHHHHH---hhhhHHHhhhChhHHHHHHHHHHHHhhhh
Q 045960          242 RGKYVTKHVRA---VGESFLANLFDDATVDEIHRRFATKVTDV  281 (300)
Q Consensus       242 ~~~~~a~~iRA---~~ep~l~~hfge~i~delf~r~~~~~~~~  281 (300)
                       ...+..|.+.   ....++ +.++++..+.+.+.....+...
T Consensus       211 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  251 (266)
T 3ujc_A          211 -NQLLEVEHKYLHENKEEFL-KLFSEKKFISLDDGWSRKIKDS  251 (266)
T ss_dssp             -HHHHHHHHHHHHHTHHHHH-HHSCHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHHHHHHHHHH
Confidence             2222233322   222333 3367766666666666655543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.95  E-value=4.6e-09  Score=91.91  Aligned_cols=170  Identities=15%  Similarity=0.079  Sum_probs=107.1

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||++|..+..+....               |..+|+.-|+-..=-.           ...+... ..++  +..
T Consensus        46 ~~vLDiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~~~~~-----------~a~~~~~-~~~~--~~~   96 (234)
T 3dtn_A           46 PDILDLGAGTGLLSAFLMEKY---------------PEATFTLVDMSEKMLE-----------IAKNRFR-GNLK--VKY   96 (234)
T ss_dssp             CEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEESCHHHHH-----------HHHHHTC-SCTT--EEE
T ss_pred             CeEEEecCCCCHHHHHHHHhC---------------CCCeEEEEECCHHHHH-----------HHHHhhc-cCCC--EEE
Confidence            479999999998876554321               3467777775221100           0011100 0112  223


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+.+..-.++ +++|+|+++.++||++.                    .+...+|+.-.+-|+|||++++.-...++..
T Consensus        97 ~~~d~~~~~~~-~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  155 (234)
T 3dtn_A           97 IEADYSKYDFE-EKYDMVVSALSIHHLED--------------------EDKKELYKRSYSILKESGIFINADLVHGETA  155 (234)
T ss_dssp             EESCTTTCCCC-SCEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEECBCSSH
T ss_pred             EeCchhccCCC-CCceEEEEeCccccCCH--------------------HHHHHHHHHHHHhcCCCcEEEEEEecCCCCh
Confidence            44566555555 89999999999999643                    2245678888899999999999877654421


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccc-c-CCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSF-E-DFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f-~-~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                      ... ......|.....++-.+.+++..+ . .--.+.++.+|+.++++++| |++.++.....+
T Consensus       156 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-F~~v~~~~~~~~  217 (234)
T 3dtn_A          156 FIE-NLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAG-FRDVSCIYKYYQ  217 (234)
T ss_dssp             HHH-HHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTT-CEEEEEEEEETT
T ss_pred             hhh-hHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcC-CCceeeeeeecc
Confidence            111 455566777766666666665542 0 12234579999999999999 988877655443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.94  E-value=1.3e-08  Score=88.38  Aligned_cols=122  Identities=13%  Similarity=0.034  Sum_probs=76.3

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+.+..--+|++++|+++++.++|++..                   ..+...+|+.-.+-|+|||++++...+.....
T Consensus        88 ~~~d~~~~~~~~~~~D~v~~~~~l~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  148 (235)
T 3sm3_A           88 KVENASSLSFHDSSFDFAVMQAFLTSVPD-------------------PKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL  148 (235)
T ss_dssp             EECCTTSCCSCTTCEEEEEEESCGGGCCC-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS
T ss_pred             EEecccccCCCCCceeEEEEcchhhcCCC-------------------HHHHHHHHHHHHHHcCCCeEEEEEECCcchhH
Confidence            33444444578899999999999999654                   22345788888899999999999987764322


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccc-cCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSF-EDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f-~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                      +.........+......|.......... .....++++.+|++.+++++| |++.+++....+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aG-f~~~~~~~~~~~  210 (235)
T 3sm3_A          149 KLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCR-FEIDYFRVKELE  210 (235)
T ss_dssp             HHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTT-EEEEEEEEEEEE
T ss_pred             HHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcC-CEEEEEEeccee
Confidence            1100111222222222222111111111 012346789999999999999 999998877544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.90  E-value=1.2e-07  Score=84.88  Aligned_cols=150  Identities=17%  Similarity=0.150  Sum_probs=93.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+..               . +..+|+.-|+-..=       +......... .+.. +++  ..
T Consensus        48 ~~vLDiGcG~G~~~~~la~---------------~-~~~~v~gvD~s~~~-------~~~a~~~~~~-~~~~-~~v--~~  100 (267)
T 3kkz_A           48 SLIADIGCGTGGQTMVLAG---------------H-VTGQVTGLDFLSGF-------IDIFNRNARQ-SGLQ-NRV--TG  100 (267)
T ss_dssp             CEEEEETCTTCHHHHHHHT---------------T-CSSEEEEEESCHHH-------HHHHHHHHHH-TTCT-TTE--EE
T ss_pred             CEEEEeCCCCCHHHHHHHh---------------c-cCCEEEEEeCCHHH-------HHHHHHHHHH-cCCC-cCc--EE
Confidence            3799999999988775431               1 33577777752210       0001111111 1110 112  12


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+++..--+|++++|+|+|+.++|++ .                      ...+|+.-.+-|+|||++++.........
T Consensus       101 ~~~d~~~~~~~~~~fD~i~~~~~~~~~-~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  157 (267)
T 3kkz_A          101 IVGSMDDLPFRNEELDLIWSEGAIYNI-G----------------------FERGLNEWRKYLKKGGYLAVSECSWFTDE  157 (267)
T ss_dssp             EECCTTSCCCCTTCEEEEEESSCGGGT-C----------------------HHHHHHHHGGGEEEEEEEEEEEEEESSSC
T ss_pred             EEcChhhCCCCCCCEEEEEEcCCceec-C----------------------HHHHHHHHHHHcCCCCEEEEEEeeecCCC
Confidence            334444434678999999999999996 3                      35678888899999999999887644322


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      ..  ..+...|.+                ..| ..++.+++.+.+++.| |++.+++.+.
T Consensus       158 ~~--~~~~~~~~~----------------~~~-~~~~~~~~~~~l~~aG-f~~v~~~~~~  197 (267)
T 3kkz_A          158 RP--AEINDFWMD----------------AYP-EIDTIPNQVAKIHKAG-YLPVATFILP  197 (267)
T ss_dssp             CC--HHHHHHHHH----------------HCT-TCEEHHHHHHHHHHTT-EEEEEEEECC
T ss_pred             Ch--HHHHHHHHH----------------hCC-CCCCHHHHHHHHHHCC-CEEEEEEECC
Confidence            21  233333331                123 4578999999999999 9988876653

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.86  E-value=2.5e-07  Score=83.86  Aligned_cols=151  Identities=17%  Similarity=0.107  Sum_probs=93.2

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+....           +     .+|+.-|+... .-...      ...... .+.. .++  ..
T Consensus        84 ~~vLDiGcG~G~~~~~l~~~~-----------~-----~~v~gvD~s~~-~~~~a------~~~~~~-~~~~-~~~--~~  136 (297)
T 2o57_A           84 AKGLDLGAGYGGAARFLVRKF-----------G-----VSIDCLNIAPV-QNKRN------EEYNNQ-AGLA-DNI--TV  136 (297)
T ss_dssp             CEEEEETCTTSHHHHHHHHHH-----------C-----CEEEEEESCHH-HHHHH------HHHHHH-HTCT-TTE--EE
T ss_pred             CEEEEeCCCCCHHHHHHHHHh-----------C-----CEEEEEeCCHH-HHHHH------HHHHHh-cCCC-cce--EE
Confidence            379999999999887654321           1     35666664211 00111      011111 1110 112  22


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+++..--+|++++|+|++..++||+..                      ...+|+.-.+-|+|||++++......+..
T Consensus       137 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  194 (297)
T 2o57_A          137 KYGSFLEIPCEDNSYDFIWSQDAFLHSPD----------------------KLKVFQECARVLKPRGVMAITDPMKEDGI  194 (297)
T ss_dssp             EECCTTSCSSCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTC
T ss_pred             EEcCcccCCCCCCCEeEEEecchhhhcCC----------------------HHHHHHHHHHHcCCCeEEEEEEeccCCCC
Confidence            34555554578899999999999999644                      46778888899999999999987665432


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ..  ..+...+.              .+ ..| ..++++++.+++++.| |++.+++.+
T Consensus       195 ~~--~~~~~~~~--------------~~-~~~-~~~~~~~~~~~l~~aG-f~~~~~~~~  234 (297)
T 2o57_A          195 DK--SSIQPILD--------------RI-KLH-DMGSLGLYRSLAKECG-LVTLRTFSR  234 (297)
T ss_dssp             CG--GGGHHHHH--------------HH-TCS-SCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred             ch--HHHHHHHH--------------Hh-cCC-CCCCHHHHHHHHHHCC-CeEEEEEEC
Confidence            21  11222221              12 233 3568999999999999 998877655

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.86  E-value=1.2e-08  Score=88.21  Aligned_cols=160  Identities=14%  Similarity=0.164  Sum_probs=100.3

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+...                 ..+|+.-|.-..--           +.......   .++  ..
T Consensus        47 ~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~~~~-----------~~a~~~~~---~~~--~~   93 (220)
T 3hnr_A           47 GNVLEFGVGTGNLTNKLLLA-----------------GRTVYGIEPSREMR-----------MIAKEKLP---KEF--SI   93 (220)
T ss_dssp             SEEEEECCTTSHHHHHHHHT-----------------TCEEEEECSCHHHH-----------HHHHHHSC---TTC--CE
T ss_pred             CeEEEeCCCCCHHHHHHHhC-----------------CCeEEEEeCCHHHH-----------HHHHHhCC---Cce--EE
Confidence            37999999999877765431                 14566666422100           00001100   011  12


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+.+..--+| +++|+++++.++||+..                    .+...+|+.-.+-|+|||++++......+. 
T Consensus        94 ~~~d~~~~~~~-~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-  151 (220)
T 3hnr_A           94 TEGDFLSFEVP-TSIDTIVSTYAFHHLTD--------------------DEKNVAIAKYSQLLNKGGKIVFADTIFADQ-  151 (220)
T ss_dssp             ESCCSSSCCCC-SCCSEEEEESCGGGSCH--------------------HHHHHHHHHHHHHSCTTCEEEEEEECBSSH-
T ss_pred             EeCChhhcCCC-CCeEEEEECcchhcCCh--------------------HHHHHHHHHHHHhcCCCCEEEEEeccccCh-
Confidence            34455554556 89999999999999544                    112457888889999999999987554432 


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeeccc
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWL  225 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~  225 (300)
                          ......+..+...|....   ..- ..+.++++.+|++.++++.| |++...+.....|-
T Consensus       152 ----~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~w~  206 (220)
T 3hnr_A          152 ----DAYDKTVEAAKQRGFHQL---AND-LQTEYYTRIPVMQTIFENNG-FHVTFTRLNHFVWV  206 (220)
T ss_dssp             ----HHHHHHHHHHHHTTCHHH---HHH-HHHSCCCBHHHHHHHHHHTT-EEEEEEECSSSEEE
T ss_pred             ----HHHHHHHHHHHhCCCccc---hhh-cchhhcCCHHHHHHHHHHCC-CEEEEeeccceEEE
Confidence                334455555555554321   111 23456779999999999999 99988877655553

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.84  E-value=8.5e-07  Score=79.95  Aligned_cols=97  Identities=19%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC-----CCc
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA-----TPG  165 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~-----~~~  165 (300)
                      +| +++|+|+|..++|++..                    .|...+|+.-.+-|+|||++++......+...     ...
T Consensus       126 ~~-~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~  184 (287)
T 1kpg_A          126 FD-EPVDRIVSIGAFEHFGH--------------------ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPM  184 (287)
T ss_dssp             CC-CCCSEEEEESCGGGTCT--------------------TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSC
T ss_pred             CC-CCeeEEEEeCchhhcCh--------------------HHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccc
Confidence            45 89999999999999642                    13677888888999999999999887654210     000


Q ss_pred             hHHHHHHHHHHHcCCCchhhhccccCCC-cccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          166 EPMLMVLKDMISEGLAEESKVKSFEDFP-IYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       166 ~~l~~al~~mv~eG~i~~e~~d~f~~~P-~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ..-...+.+...          .. .+| ...|+++|+.+.+++.| |++.+++.+
T Consensus       185 ~~~~~~~~~~~~----------~~-~~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~  228 (287)
T 1kpg_A          185 SFTFARFLKFIV----------TE-IFPGGRLPSIPMVQECASANG-FTVTRVQSL  228 (287)
T ss_dssp             HHHHHHHHHHHH----------HH-TSTTCCCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred             cccccchhhhHH----------he-eCCCCCCCCHHHHHHHHHhCC-cEEEEEEeC
Confidence            000001111111          11 122 24579999999999999 999887754

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.82  E-value=7.5e-08  Score=85.71  Aligned_cols=103  Identities=14%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+.+..--+|++++|+|+|+.++||+..                      ...+|+.-.+-|+|||++++.....++.  
T Consensus        91 ~~d~~~l~~~~~~fD~V~~~~~l~~~~d----------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~--  146 (260)
T 1vl5_A           91 QGDAEQMPFTDERFHIVTCRIAAHHFPN----------------------PASFVSEAYRVLKKGGQLLLVDNSAPEN--  146 (260)
T ss_dssp             ECCC-CCCSCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEEEBCSS--
T ss_pred             EecHHhCCCCCCCEEEEEEhhhhHhcCC----------------------HHHHHHHHHHHcCCCCEEEEEEcCCCCC--
Confidence            3455544478899999999999999644                      4567777889999999999987655432  


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                         ..+...+..+ ..       ...-  ......+.+++..++++.| |++..++....+
T Consensus       147 ---~~~~~~~~~~-~~-------~~~~--~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~  193 (260)
T 1vl5_A          147 ---DAFDVFYNYV-EK-------ERDY--SHHRAWKKSDWLKMLEEAG-FELEELHCFHKT  193 (260)
T ss_dssp             ---HHHHHHHHHH-HH-------HHCT--TCCCCCBHHHHHHHHHHHT-CEEEEEEEEEEE
T ss_pred             ---HHHHHHHHHH-HH-------hcCc--cccCCCCHHHHHHHHHHCC-CeEEEEEEeecc
Confidence               1222222211 10       1111  1224568999999999999 999888777544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.81  E-value=2.6e-07  Score=84.21  Aligned_cols=148  Identities=13%  Similarity=0.112  Sum_probs=84.7

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      +++|+|+++.++||+ .                      +..+|+.-.+-|+|||++++...+.+.....  ..+...+.
T Consensus       112 ~~fD~V~~~~~l~~~-~----------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~  166 (299)
T 3g5t_A          112 QKIDMITAVECAHWF-D----------------------FEKFQRSAYANLRKDGTIAIWGYADPIFPDY--PEFDDLMI  166 (299)
T ss_dssp             SCEEEEEEESCGGGS-C----------------------HHHHHHHHHHHEEEEEEEEEEEEEEEECTTC--GGGTTHHH
T ss_pred             CCeeEEeHhhHHHHh-C----------------------HHHHHHHHHHhcCCCcEEEEEecCCccccCc--HHHHHHHH
Confidence            899999999999997 4                      5678888889999999999876655322111  12333444


Q ss_pred             HHHHcCCCchhhhccccCCCccc-CCHHHHHHHHHhcCC----eeEEEEEEEeec-ccCCccC----CCCCCCCcccchH
Q 045960          174 DMISEGLAEESKVKSFEDFPIYR-ASVDEVKQIVKKEGS----FDIQEVETFNVS-WLVGFVD----GVDNKGSDKYARG  243 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y~-~s~eE~~~~i~~~gs----F~I~~~e~~~~~-~~~~~~~----~~~~~~~d~~~~~  243 (300)
                      ++....        .. .-|++. |+.+.++..+++.|-    |.-.+.+.+... |... ..    ............-
T Consensus       167 ~~~~~~--------~~-~~~~w~~p~~~~~~~~l~~~gfp~~~f~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  236 (299)
T 3g5t_A          167 EVPYGK--------QG-LGPYWEQPGRSRLRNMLKDSHLDPELFHDIQVSYFCAEDVRDK-VKLHQHTKKPLLIRKQVTL  236 (299)
T ss_dssp             HHHHCT--------TT-TGGGSCTTHHHHHHTTTTTCCCCTTTEEEEEEEEECGGGGGCH-HHHHHCSSCCCCCEEEECH
T ss_pred             HhccCc--------cc-ccchhhchhhHHHHHhhhccCCChHHcCcceEEEecccccccc-cccccCCCCceeeeccccH
Confidence            433221        12 355555 889999999999882    343333333221 2220 00    0000001223446


Q ss_pred             HHHHHHHHHhhh--hHHHh-hhCh--hHHHHHHHH-HHH
Q 045960          244 KYVTKHVRAVGE--SFLAN-LFDD--ATVDEIHRR-FAT  276 (300)
Q Consensus       244 ~~~a~~iRA~~e--p~l~~-hfge--~i~delf~r-~~~  276 (300)
                      ..+..++|++..  ..... .-++  ++++++.++ +++
T Consensus       237 ~~~~~~l~t~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~  275 (299)
T 3g5t_A          237 VEFADYVRTWSAYHQWKQDPKNKDKEDVADWFIKESLRR  275 (299)
T ss_dssp             HHHHHHHTTSHHHHHHHHCGGGTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHhcccCCchhhHHHHHHHHHHHh
Confidence            788888886654  22220 1233  677777766 444

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.77  E-value=4.1e-07  Score=80.23  Aligned_cols=102  Identities=18%  Similarity=0.292  Sum_probs=68.2

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +.+..--+|++++|+|+++.++||+..                      ...+|+.-.+-|+|||++++.....++.   
T Consensus        76 ~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~---  130 (239)
T 1xxl_A           76 GTAESLPFPDDSFDIITCRYAAHHFSD----------------------VRKAVREVARVLKQDGRFLLVDHYAPED---  130 (239)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEECBCSS---
T ss_pred             cccccCCCCCCcEEEEEECCchhhccC----------------------HHHHHHHHHHHcCCCcEEEEEEcCCCCC---
Confidence            344443478899999999999999644                      4567777889999999999976654432   


Q ss_pred             CchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          164 PGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       164 ~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                        ..+...+..+ ..      ..+.   ......+.+|+..++++.| |++.+++....+
T Consensus       131 --~~~~~~~~~~-~~------~~~~---~~~~~~~~~~~~~ll~~aG-f~~~~~~~~~~~  177 (239)
T 1xxl_A          131 --PVLDEFVNHL-NR------LRDP---SHVRESSLSEWQAMFSANQ-LAYQDIQKWNLP  177 (239)
T ss_dssp             --HHHHHHHHHH-HH------HHCT---TCCCCCBHHHHHHHHHHTT-EEEEEEEEEEEE
T ss_pred             --hhHHHHHHHH-HH------hccc---cccCCCCHHHHHHHHHHCC-CcEEEEEeecCc
Confidence              1222222211 10      0011   1123458999999999999 998888776544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.76  E-value=4.4e-08  Score=89.01  Aligned_cols=163  Identities=18%  Similarity=0.228  Sum_probs=90.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+..        ..     ..+..+|+.-|+-. +.      |....+.... .+.. .++  .-+
T Consensus        73 ~vLDlGcGtG~~~~~la~--------~~-----~~~~~~v~gvD~s~-~m------l~~A~~~~~~-~~~~-~~v--~~~  128 (261)
T 4gek_A           73 QVYDLGCSLGAATLSVRR--------NI-----HHDNCKIIAIDNSP-AM------IERCRRHIDA-YKAP-TPV--DVI  128 (261)
T ss_dssp             EEEEETCTTTHHHHHHHH--------TC-----CSSSCEEEEEESCH-HH------HHHHHHHHHT-SCCS-SCE--EEE
T ss_pred             EEEEEeCCCCHHHHHHHH--------hc-----CCCCCEEEEEECCH-HH------HHHHHHHHHh-hccC-ceE--EEe
Confidence            799999999988765432        11     23456777777421 00      1111111111 1111 122  112


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -|.+.+  +|-.++|+++|+++|||+..                    .|...+|+.-++-|+|||+|++.=....... 
T Consensus       129 ~~D~~~--~~~~~~d~v~~~~~l~~~~~--------------------~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~-  185 (261)
T 4gek_A          129 EGDIRD--IAIENASMVVLNFTLQFLEP--------------------SERQALLDKIYQGLNPGGALVLSEKFSFEDA-  185 (261)
T ss_dssp             ESCTTT--CCCCSEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEEBCCSSH-
T ss_pred             eccccc--ccccccccceeeeeeeecCc--------------------hhHhHHHHHHHHHcCCCcEEEEEeccCCCCH-
Confidence            344433  46677999999999999532                    2456788888999999999998754433211 


Q ss_pred             CCchHHHHHHHHHHH-cCCCchhhhc----cccCCCcccCCHHHHHHHHHhcCCeeEE
Q 045960          163 TPGEPMLMVLKDMIS-EGLAEESKVK----SFEDFPIYRASVDEVKQIVKKEGSFDIQ  215 (300)
Q Consensus       163 ~~~~~l~~al~~mv~-eG~i~~e~~d----~f~~~P~y~~s~eE~~~~i~~~gsF~I~  215 (300)
                      ...+.+...+.+... .|. ++.++.    .. .-.....|.+|+++.++++| |+-.
T Consensus       186 ~~~~~~~~~~~~~~~~~g~-s~~ei~~~~~~l-~~~~~~~s~~~~~~~L~~AG-F~~v  240 (261)
T 4gek_A          186 KVGELLFNMHHDFKRANGY-SELEISQKRSML-ENVMLTDSVETHKARLHKAG-FEHS  240 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTTG-GGSTTHHHHHHH-HHHCCCBCHHHHHHHHHHHT-CSEE
T ss_pred             HHHHHHHHHHHHHHHHcCC-CHHHHHHHHhhh-cccccCCCHHHHHHHHHHcC-CCeE
Confidence            111333333433332 343 222221    11 11123468999999999999 7643

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.76  E-value=5.8e-08  Score=87.03  Aligned_cols=161  Identities=14%  Similarity=0.185  Sum_probs=94.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+...               .|..+|+.-|.-.+-....       ...... .+  .++  +..
T Consensus        39 ~~vLDiG~G~G~~~~~l~~~---------------~~~~~v~~vD~s~~~~~~a-------~~~~~~-~~--~~~--~~~   91 (276)
T 3mgg_A           39 AKVLEAGCGIGAQTVILAKN---------------NPDAEITSIDISPESLEKA-------RENTEK-NG--IKN--VKF   91 (276)
T ss_dssp             CEEEETTCTTSHHHHHHHHH---------------CTTSEEEEEESCHHHHHHH-------HHHHHH-TT--CCS--EEE
T ss_pred             CeEEEecCCCCHHHHHHHHh---------------CCCCEEEEEECCHHHHHHH-------HHHHHH-cC--CCC--cEE
Confidence            37999999999877654321               1335777777522111111       011111 11  122  222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+....-.+|++++|+|+++.++||+..                      ...+|+.-.+-|+|||++++.....+...
T Consensus        92 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  149 (276)
T 3mgg_A           92 LQANIFSLPFEDSSFDHIFVCFVLEHLQS----------------------PEEALKSLKKVLKPGGTITVIEGDHGSCY  149 (276)
T ss_dssp             EECCGGGCCSCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEECGGGCE
T ss_pred             EEcccccCCCCCCCeeEEEEechhhhcCC----------------------HHHHHHHHHHHcCCCcEEEEEEcCCCCce
Confidence            33455555688999999999999999654                      34677778889999999999876543321


Q ss_pred             --CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          162 --ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       162 --~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                        +.. ..+...+..+....     .....     ...+.+++..+++++| |++.+++....+
T Consensus       150 ~~~~~-~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~l~~~l~~aG-f~~v~~~~~~~~  201 (276)
T 3mgg_A          150 FHPEG-KKAIEAWNCLIRVQ-----AYMKG-----NSLVGRQIYPLLQESG-FEKIRVEPRMVY  201 (276)
T ss_dssp             EESCC-HHHHHHHHHHHHHH-----HHTTC-----CTTGGGGHHHHHHHTT-CEEEEEEEEEEE
T ss_pred             ECCCc-HHHHHHHHHHHHHH-----HhcCC-----CcchHHHHHHHHHHCC-CCeEEEeeEEEE
Confidence              111 22333333222110     00111     1235578999999999 999888877554

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.75  E-value=4e-08  Score=84.03  Aligned_cols=96  Identities=11%  Similarity=0.127  Sum_probs=73.7

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+++..--+|++++|+|+++.++|+++.                    +|...+|+.-++-|+|||++++........ 
T Consensus        89 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-  147 (203)
T 3h2b_A           89 HHGTITDLSDSPKRWAGLLAWYSLIHMGP--------------------GELPDALVALRMAVEDGGGLLMSFFSGPSL-  147 (203)
T ss_dssp             ECCCGGGGGGSCCCEEEEEEESSSTTCCT--------------------TTHHHHHHHHHHTEEEEEEEEEEEECCSSC-
T ss_pred             EeCcccccccCCCCeEEEEehhhHhcCCH--------------------HHHHHHHHHHHHHcCCCcEEEEEEccCCch-
Confidence            34455544478899999999999999642                    246778888899999999999998655431 


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                                            ..++.. ..+.+..+.+|+++++++.| |++.+++.+..
T Consensus       148 ----------------------~~~~~~-~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~  184 (203)
T 3h2b_A          148 ----------------------EPMYHP-VATAYRWPLPELAQALETAG-FQVTSSHWDPR  184 (203)
T ss_dssp             ----------------------EEECCS-SSCEEECCHHHHHHHHHHTT-EEEEEEEECTT
T ss_pred             ----------------------hhhhch-hhhhccCCHHHHHHHHHHCC-CcEEEEEecCC
Confidence                                  113334 46778899999999999999 99999887754

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.73  E-value=2.1e-07  Score=81.04  Aligned_cols=97  Identities=11%  Similarity=0.097  Sum_probs=65.2

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH-HhhccCceeEEEEeecCCCCCCCchHH
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRS-EELKSQGRMVLTLLYNDNFHATPGEPM  168 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra-~EL~~GG~~vl~~~g~~~~~~~~~~~l  168 (300)
                      ++|++++|+|+++.+||++..                      ...+|+.-+ +-|+|||++++..+....        +
T Consensus        98 ~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~~LkpgG~l~i~~~~~~~--------~  147 (250)
T 2p7i_A           98 AQLPRRYDNIVLTHVLEHIDD----------------------PVALLKRINDDWLAEGGRLFLVCPNANA--------V  147 (250)
T ss_dssp             CCCSSCEEEEEEESCGGGCSS----------------------HHHHHHHHHHTTEEEEEEEEEEEECTTC--------H
T ss_pred             cCcCCcccEEEEhhHHHhhcC----------------------HHHHHHHHHHHhcCCCCEEEEEcCChHH--------H
Confidence            378999999999999999644                      456777788 899999999998864432        1


Q ss_pred             HHHHHHHHHcCCCchhh----hccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          169 LMVLKDMISEGLAEESK----VKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       169 ~~al~~mv~eG~i~~e~----~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ...+.  ...|.+....    .+.. .--....+.+++++++++.| |++.+.+.+
T Consensus       148 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~  199 (250)
T 2p7i_A          148 SRQIA--VKMGIISHNSAVTEAEFA-HGHRCTYALDTLERDASRAG-LQVTYRSGI  199 (250)
T ss_dssp             HHHHH--HHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred             HHHHH--HHcCccccchhccccccc-ccccccCCHHHHHHHHHHCC-CeEEEEeee
Confidence            11111  1123333211    0101 11224579999999999999 999888765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.70  E-value=2.8e-07  Score=83.16  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=72.1

Q ss_pred             Ccccccc-CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           84 GSFYTRL-FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        84 gSFy~~l-~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      +++..-. ++++++|+|+++.++||+..                      ...+|+.-++-|+|||++++..........
T Consensus       124 ~d~~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  181 (285)
T 4htf_A          124 CAAQDVASHLETPVDLILFHAVLEWVAD----------------------PRSVLQTLWSVLRPGGVLSLMFYNAHGLLM  181 (285)
T ss_dssp             SCGGGTGGGCSSCEEEEEEESCGGGCSC----------------------HHHHHHHHHHTEEEEEEEEEEEEBHHHHHH
T ss_pred             cCHHHhhhhcCCCceEEEECchhhcccC----------------------HHHHHHHHHHHcCCCeEEEEEEeCCchHHH
Confidence            4444443 68899999999999999644                      456788888999999999999876542100


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                       . ..+...+. ....+.... . ... .-|.++.+++|+++++++.| |++.+.+.+...
T Consensus       182 -~-~~~~~~~~-~~~~~~~~~-~-~~~-~~~~~~~~~~~l~~~l~~aG-f~v~~~~~~~~~  235 (285)
T 4htf_A          182 -H-NMVAGNFD-YVQAGMPKK-K-KRT-LSPDYPRDPTQVYLWLEEAG-WQIMGKTGVRVF  235 (285)
T ss_dssp             -H-HHHTTCHH-HHHTTCCCC-------CCCSCCBCHHHHHHHHHHTT-CEEEEEEEESSS
T ss_pred             -H-HHHhcCHH-HHhhhcccc-c-ccc-CCCCCCCCHHHHHHHHHHCC-CceeeeeeEEEe
Confidence             0 00000111 112222111 1 112 24567889999999999999 999988877544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.70  E-value=4.5e-07  Score=80.01  Aligned_cols=96  Identities=13%  Similarity=0.060  Sum_probs=63.6

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+++..-.+ ++++|+|+|+.++|++..                      ...+|+.-.+-|||||++++.........
T Consensus        91 ~~~d~~~~~~-~~~fD~V~~~~~~~~~~~----------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~  147 (256)
T 1nkv_A           91 IHNDAAGYVA-NEKCDVAACVGATWIAGG----------------------FAGAEELLAQSLKPGGIMLIGEPYWRQLP  147 (256)
T ss_dssp             EESCCTTCCC-SSCEEEEEEESCGGGTSS----------------------SHHHHHHHTTSEEEEEEEEEEEEEETTCC
T ss_pred             EECChHhCCc-CCCCCEEEECCChHhcCC----------------------HHHHHHHHHHHcCCCeEEEEecCcccCCC
Confidence            3455554333 789999999999999654                      35567777889999999999876543321


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                       .. .    .+..    ..      ..  .....+++.+++.+++++.| |++.+++.
T Consensus       148 -~~-~----~~~~----~~------~~--~~~~~~~~~~~~~~~l~~aG-f~~~~~~~  186 (256)
T 1nkv_A          148 -AT-E----EIAQ----AC------GV--SSTSDFLTLPGLVGAFDDLG-YDVVEMVL  186 (256)
T ss_dssp             -SS-H----HHHH----TT------TC--SCGGGSCCHHHHHHHHHTTT-BCCCEEEE
T ss_pred             -Ch-H----HHHH----HH------hc--ccccccCCHHHHHHHHHHCC-CeeEEEEe
Confidence             11 1    1111    10      11  11235679999999999999 88766553

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.68  E-value=7.9e-07  Score=81.58  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      +++|+|+|+.++|++..                    .|...+|+.-.+-|+|||++++......+........+...+.
T Consensus       154 ~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~  213 (318)
T 2fk8_A          154 EPVDRIVSIEAFEHFGH--------------------ENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFE  213 (318)
T ss_dssp             CCCSEEEEESCGGGTCG--------------------GGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHH
T ss_pred             CCcCEEEEeChHHhcCH--------------------HHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhcccccccc
Confidence            78999999999999532                    2467788888899999999999988765421000000000000


Q ss_pred             HHHHcCCCchhhhccccCCC-cccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          174 DMISEGLAEESKVKSFEDFP-IYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P-~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ....     .+-+... .+| .+.|+.+|+.+.+++.| |++.+++.+
T Consensus       214 ~~~~-----~~~~~~~-~~~~~~~~s~~~~~~~l~~aG-f~~~~~~~~  254 (318)
T 2fk8_A          214 TARF-----IKFIVTE-IFPGGRLPSTEMMVEHGEKAG-FTVPEPLSL  254 (318)
T ss_dssp             HHHH-----HHHHHHH-TSTTCCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred             ccch-----hhHHHHh-cCCCCcCCCHHHHHHHHHhCC-CEEEEEEec
Confidence            0000     0001112 234 46679999999999999 888766554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.68  E-value=2.6e-07  Score=79.69  Aligned_cols=144  Identities=17%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+....              .|..+|+.-|.-..--. .      ....... .+.  .++  ..
T Consensus        39 ~~vLDiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~s~~~~~-~------a~~~~~~-~~~--~~~--~~   92 (219)
T 3dh0_A           39 MTVLDVGTGAGFYLPYLSKMV--------------GEKGKVYAIDVQEEMVN-Y------AWEKVNK-LGL--KNV--EV   92 (219)
T ss_dssp             CEEEESSCTTCTTHHHHHHHH--------------TTTCEEEEEESCHHHHH-H------HHHHHHH-HTC--TTE--EE
T ss_pred             CEEEEEecCCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHH-H------HHHHHHH-cCC--CcE--EE
Confidence            379999999999887654321              13467777775221110 0      1111111 111  122  12


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+.+..--+|++++|+++++.++||+.+                      ...+|+.-.+-|+|||++++.........
T Consensus        93 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~  150 (219)
T 3dh0_A           93 LKSEENKIPLPDNTVDFIFMAFTFHELSE----------------------PLKFLEELKRVAKPFAYLAIIDWKKEERD  150 (219)
T ss_dssp             EECBTTBCSSCSSCEEEEEEESCGGGCSS----------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCS
T ss_pred             EecccccCCCCCCCeeEEEeehhhhhcCC----------------------HHHHHHHHHHHhCCCeEEEEEEecccccc
Confidence            33444444578999999999999999644                      46677778889999999999865444321


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                                                .- .......+.+|++..+++.| |++.+...+.
T Consensus       151 --------------------------~~-~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  182 (219)
T 3dh0_A          151 --------------------------KG-PPPEEVYSEWEVGLILEDAG-IRVGRVVEVG  182 (219)
T ss_dssp             --------------------------SS-CCGGGSCCHHHHHHHHHHTT-CEEEEEEEET
T ss_pred             --------------------------cC-CchhcccCHHHHHHHHHHCC-CEEEEEEeeC
Confidence                                      00 12234568999999999999 9988876553

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.68  E-value=2.3e-07  Score=84.56  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=61.7

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      ||++++|+|+++.+|||+.+                      +..+|+.-++-|||||++++.......       .+..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d----------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~-------~~~~  181 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKD----------------------IPATLKFFHSLLGTNAKMLIIVVSGSS-------GWDK  181 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSC----------------------HHHHHHHHHHTEEEEEEEEEEEECTTS-------HHHH
T ss_pred             cCCCceeEEEEeeeeeecCC----------------------HHHHHHHHHHHcCCCcEEEEEEecCCc-------cHHH
Confidence            57899999999999999544                      567788888999999999998754321       1223


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      .+.+....  +.      - .-...+++++|+.+++++.| |++.+.+
T Consensus       182 ~~~~~~~~--~~------~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~  219 (292)
T 2aot_A          182 LWKKYGSR--FP------Q-DDLCQYITSDDLTQMLDNLG-LKYECYD  219 (292)
T ss_dssp             HHHHHGGG--SC------C-CTTCCCCCHHHHHHHHHHHT-CCEEEEE
T ss_pred             HHHHHHHh--cc------C-CCcccCCCHHHHHHHHHHCC-CceEEEE
Confidence            33332111  00      0 01135678999999999999 8877643

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.67  E-value=2.8e-07  Score=79.00  Aligned_cols=157  Identities=11%  Similarity=0.044  Sum_probs=90.3

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..+..+...            +     .+|+.-|+-.           ...+. .+..+.  .++  ..+
T Consensus        49 ~vLdiG~G~G~~~~~l~~~------------~-----~~v~~~D~s~-----------~~~~~-a~~~~~--~~~--~~~   95 (218)
T 3ou2_A           49 DVLELASGTGYWTRHLSGL------------A-----DRVTALDGSA-----------EMIAE-AGRHGL--DNV--EFR   95 (218)
T ss_dssp             EEEEESCTTSHHHHHHHHH------------S-----SEEEEEESCH-----------HHHHH-HGGGCC--TTE--EEE
T ss_pred             eEEEECCCCCHHHHHHHhc------------C-----CeEEEEeCCH-----------HHHHH-HHhcCC--CCe--EEE
Confidence            7999999999987765432            1     3555555421           00000 011111  222  223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      .+.+..- +|++++|+++++.++||+..                    .++..+|+.-.+-|+|||++++...++.... 
T Consensus        96 ~~d~~~~-~~~~~~D~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-  153 (218)
T 3ou2_A           96 QQDLFDW-TPDRQWDAVFFAHWLAHVPD--------------------DRFEAFWESVRSAVAPGGVVEFVDVTDHERR-  153 (218)
T ss_dssp             ECCTTSC-CCSSCEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEECCCC---
T ss_pred             ecccccC-CCCCceeEEEEechhhcCCH--------------------HHHHHHHHHHHHHcCCCeEEEEEeCCCCccc-
Confidence            3455443 89999999999999999543                    2357788888899999999999988774321 


Q ss_pred             CCchHHHHHHHHHHHcCCCchh-hhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          163 TPGEPMLMVLKDMISEGLAEES-KVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e-~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                           +...+...........- .-..+ .....+++++|+.+++++.| |+++..+...
T Consensus       154 -----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~  206 (218)
T 3ou2_A          154 -----LEQQDDSEPEVAVRRTLQDGRSF-RIVKVFRSPAELTERLTALG-WSCSVDEVHP  206 (218)
T ss_dssp             ---------------CEEEEECTTSCEE-EEECCCCCHHHHHHHHHHTT-EEEEEEEEET
T ss_pred             -----cchhhhcccccceeeecCCcchh-hHhhcCCCHHHHHHHHHHCC-CEEEeeeccc
Confidence                 11111110011000000 00001 11123679999999999999 9988777654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.67  E-value=1.4e-07  Score=82.72  Aligned_cols=142  Identities=16%  Similarity=0.210  Sum_probs=92.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..+..+..                 +..+|+..|.-.+=-...       ...... .+. ..+  +..+
T Consensus        69 ~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~~~~~~a-------~~~~~~-~~~-~~~--v~~~  120 (235)
T 3lcc_A           69 RALVPGCGGGHDVVAMAS-----------------PERFVVGLDISESALAKA-------NETYGS-SPK-AEY--FSFV  120 (235)
T ss_dssp             EEEEETCTTCHHHHHHCB-----------------TTEEEEEECSCHHHHHHH-------HHHHTT-SGG-GGG--EEEE
T ss_pred             CEEEeCCCCCHHHHHHHh-----------------CCCeEEEEECCHHHHHHH-------HHHhhc-cCC-Ccc--eEEE
Confidence            799999999998875421                 235677777532111111       011100 000 011  2234


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+.+.. +.|+.++|+|+++.++||+..                    .|...+|+.-++-|+|||++++.......   
T Consensus       121 ~~d~~~-~~~~~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---  176 (235)
T 3lcc_A          121 KEDVFT-WRPTELFDLIFDYVFFCAIEP--------------------EMRPAWAKSMYELLKPDGELITLMYPITD---  176 (235)
T ss_dssp             CCCTTT-CCCSSCEEEEEEESSTTTSCG--------------------GGHHHHHHHHHHHEEEEEEEEEEECCCSC---
T ss_pred             ECchhc-CCCCCCeeEEEEChhhhcCCH--------------------HHHHHHHHHHHHHCCCCcEEEEEEecccc---
Confidence            445544 457789999999999999642                    24677888888999999999887643321   


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                                               .. .-|.|..+.+|++.++++.| |++.+++....+
T Consensus       177 -------------------------~~-~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~  210 (235)
T 3lcc_A          177 -------------------------HV-GGPPYKVDVSTFEEVLVPIG-FKAVSVEENPHA  210 (235)
T ss_dssp             -------------------------CC-SCSSCCCCHHHHHHHHGGGT-EEEEEEEECTTC
T ss_pred             -------------------------cC-CCCCccCCHHHHHHHHHHcC-CeEEEEEecCCc
Confidence                                     11 33446689999999999999 999998877544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.65  E-value=5.7e-07  Score=77.37  Aligned_cols=101  Identities=16%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHH
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML  169 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~  169 (300)
                      -+|++++|+++++.++|++..                      ...+|+.-.+-|+|||++++........         
T Consensus        88 ~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~---------  136 (230)
T 3cc8_A           88 PYEEEQFDCVIFGDVLEHLFD----------------------PWAVIEKVKPYIKQNGVILASIPNVSHI---------  136 (230)
T ss_dssp             CSCTTCEEEEEEESCGGGSSC----------------------HHHHHHHTGGGEEEEEEEEEEEECTTSH---------
T ss_pred             CCCCCccCEEEECChhhhcCC----------------------HHHHHHHHHHHcCCCCEEEEEeCCcchH---------
Confidence            367889999999999999654                      3467888889999999999988654321         


Q ss_pred             HHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          170 MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       170 ~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                      ..+..+. .+.+..............+.+.+|++.++++.| |++.+++.+...
T Consensus       137 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~  188 (230)
T 3cc8_A          137 SVLAPLL-AGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAG-YSISKVDRVYVD  188 (230)
T ss_dssp             HHHHHHH-TTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTT-EEEEEEEEEECC
T ss_pred             HHHHHHh-cCCceeccCCCCCcceEEEecHHHHHHHHHHcC-CeEEEEEecccC
Confidence            1122222 222221111111012345679999999999999 999888877544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.63  E-value=4.5e-07  Score=79.24  Aligned_cols=146  Identities=16%  Similarity=0.173  Sum_probs=91.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+...            +     .+|+.-|+-. +.-...           +..... .++  ..
T Consensus        55 ~~vLDiG~G~G~~~~~l~~~------------~-----~~v~~vD~s~-~~~~~a-----------~~~~~~-~~~--~~  102 (242)
T 3l8d_A           55 AEVLDVGCGDGYGTYKLSRT------------G-----YKAVGVDISE-VMIQKG-----------KERGEG-PDL--SF  102 (242)
T ss_dssp             CEEEEETCTTSHHHHHHHHT------------T-----CEEEEEESCH-HHHHHH-----------HTTTCB-TTE--EE
T ss_pred             CeEEEEcCCCCHHHHHHHHc------------C-----CeEEEEECCH-HHHHHH-----------Hhhccc-CCc--eE
Confidence            37999999999887654431            1     3566666421 111111           111110 122  12


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+.+..--+|++++|+|+++.++||+..                      ...+|+.-.+-|+|||++++...+.....
T Consensus       103 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~  160 (242)
T 3l8d_A          103 IKGDLSSLPFENEQFEAIMAINSLEWTEE----------------------PLRALNEIKRVLKSDGYACIAILGPTAKP  160 (242)
T ss_dssp             EECBTTBCSSCTTCEEEEEEESCTTSSSC----------------------HHHHHHHHHHHEEEEEEEEEEEECTTCGG
T ss_pred             EEcchhcCCCCCCCccEEEEcChHhhccC----------------------HHHHHHHHHHHhCCCeEEEEEEcCCcchh
Confidence            33444444578999999999999999643                      45677888899999999999987654321


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      .      ...+           ...... .......++++++.++++.| |++.+.+.+
T Consensus       161 ~------~~~~-----------~~~~~~-~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~  200 (242)
T 3l8d_A          161 R------ENSY-----------PRLYGK-DVVCNTMMPWEFEQLVKEQG-FKVVDGIGV  200 (242)
T ss_dssp             G------GGGG-----------GGGGTC-CCSSCCCCHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             h------hhhh-----------hhhccc-cccccCCCHHHHHHHHHHcC-CEEEEeecc
Confidence            0      0000           011222 34566789999999999999 999887755

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.57  E-value=1.2e-06  Score=78.32  Aligned_cols=148  Identities=14%  Similarity=0.086  Sum_probs=92.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+..                 +..+|+..|+-.    ..          +... ... .+  +..
T Consensus        36 ~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~----~~----------~~~a-~~~-~~--~~~   80 (261)
T 3ege_A           36 SVIADIGAGTGGYSVALAN-----------------QGLFVYAVEPSI----VM----------RQQA-VVH-PQ--VEW   80 (261)
T ss_dssp             CEEEEETCTTSHHHHHHHT-----------------TTCEEEEECSCH----HH----------HHSS-CCC-TT--EEE
T ss_pred             CEEEEEcCcccHHHHHHHh-----------------CCCEEEEEeCCH----HH----------HHHH-Hhc-cC--CEE
Confidence            3799999999998765431                 236778877532    00          0000 000 11  122


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-+.+..--+|++++|+|+++.++||+.+                      +..+|+.-.+-|| ||++++.........
T Consensus        81 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~  137 (261)
T 3ege_A           81 FTGYAENLALPDKSVDGVISILAIHHFSH----------------------LEKSFQEMQRIIR-DGTIVLLTFDIRLAQ  137 (261)
T ss_dssp             ECCCTTSCCSCTTCBSEEEEESCGGGCSS----------------------HHHHHHHHHHHBC-SSCEEEEEECGGGCC
T ss_pred             EECchhhCCCCCCCEeEEEEcchHhhccC----------------------HHHHHHHHHHHhC-CcEEEEEEcCCchhH
Confidence            33455444478899999999999999643                      6678888889999 998888876543322


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeeccc
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWL  225 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~  225 (300)
                      ...   +...+.++.          .   ....++++.+++. ++++.| |++.+.+.+..++.
T Consensus       138 ~~~---~~~~~~~~~----------~---~~~~~~~~~~~~~-~l~~aG-F~~v~~~~~~~p~~  183 (261)
T 3ege_A          138 RIW---LYDYFPFLW----------E---DALRFLPLDEQIN-LLQENT-KRRVEAIPFLLPHD  183 (261)
T ss_dssp             CCG---GGGTCHHHH----------H---HHHTSCCHHHHHH-HHHHHH-CSEEEEEECCEETT
T ss_pred             HHH---HHHHHHHHh----------h---hhhhhCCCHHHHH-HHHHcC-CCceeEEEecCCCc
Confidence            111   111111110          0   1113467789999 999999 99988888877643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.56  E-value=1.2e-06  Score=76.00  Aligned_cols=91  Identities=16%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|+++++.+|||+..                      ...+|+.-.+-|+|||++++.......       ....
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~-------~~~~  148 (219)
T 1vlm_A           98 LKDESFDFALMVTTICFVDD----------------------PERALKEAYRILKKGGYLIVGIVDRES-------FLGR  148 (219)
T ss_dssp             SCTTCEEEEEEESCGGGSSC----------------------HHHHHHHHHHHEEEEEEEEEEEECSSS-------HHHH
T ss_pred             CCCCCeeEEEEcchHhhccC----------------------HHHHHHHHHHHcCCCcEEEEEEeCCcc-------HHHH
Confidence            67789999999999999643                      456777778889999999998865432       1222


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      .+... ..|       ..+ .-...+++.+|++.++++.| |++.++...
T Consensus       149 ~~~~~-~~~-------~~~-~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~  188 (219)
T 1vlm_A          149 EYEKN-KEK-------SVF-YKNARFFSTEELMDLMRKAG-FEEFKVVQT  188 (219)
T ss_dssp             HHHHT-TTC--------CC-STTCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred             HHHHH-hcC-------cch-hcccccCCHHHHHHHHHHCC-CeEEEEecc
Confidence            22221 111       233 34556789999999999999 998877655

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.56  E-value=5.2e-07  Score=79.37  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHH
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML  169 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~  169 (300)
                      -+|++++|+|+|+.++||+..                    .|+..+|+.-.+-|+|||++++...+...        +.
T Consensus        96 ~~~~~~fD~i~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--------~~  147 (240)
T 3dli_A           96 SLPDKYLDGVMISHFVEHLDP--------------------ERLFELLSLCYSKMKYSSYIVIESPNPTS--------LY  147 (240)
T ss_dssp             TSCTTCBSEEEEESCGGGSCG--------------------GGHHHHHHHHHHHBCTTCCEEEEEECTTS--------HH
T ss_pred             hcCCCCeeEEEECCchhhCCc--------------------HHHHHHHHHHHHHcCCCcEEEEEeCCcch--------hH
Confidence            468899999999999999653                    24678888899999999999998875332        11


Q ss_pred             HHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          170 MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       170 ~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      . +.+.          . .. .--.+.++.++++.++++.| |++.+++.+.
T Consensus       148 ~-~~~~----------~-~~-~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~  185 (240)
T 3dli_A          148 S-LINF----------Y-ID-PTHKKPVHPETLKFILEYLG-FRDVKIEFFE  185 (240)
T ss_dssp             H-HHHH----------T-TS-TTCCSCCCHHHHHHHHHHHT-CEEEEEEEEC
T ss_pred             H-HHHH----------h-cC-ccccccCCHHHHHHHHHHCC-CeEEEEEEec
Confidence            1 1110          0 11 12235678899999999999 9988888774

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.54  E-value=4.3e-06  Score=74.55  Aligned_cols=167  Identities=10%  Similarity=0.002  Sum_probs=92.3

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCc-----hHHHhhcChhhHHHHhhhcCCCCCc
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSD-----FNTVFKSLPSFYERLRTEKGHEFGS   76 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~ND-----Fn~Lf~~l~~~~~~~~~~~~~~~~~   76 (300)
                      -+|.|+||++|..++.+....           +   |..+|+.-|+-.+.     .-...+      ..+.. .+.. .+
T Consensus        45 ~~vLDiGcG~G~~~~~l~~~~-----------g---~~~~v~gvD~s~~~~~~~~~~~~a~------~~~~~-~~~~-~~  102 (275)
T 3bkx_A           45 EKILEIGCGQGDLSAVLADQV-----------G---SSGHVTGIDIASPDYGAPLTLGQAW------NHLLA-GPLG-DR  102 (275)
T ss_dssp             CEEEEESCTTSHHHHHHHHHH-----------C---TTCEEEEECSSCTTCCSSSCHHHHH------HHHHT-STTG-GG
T ss_pred             CEEEEeCCCCCHHHHHHHHHh-----------C---CCCEEEEEECCccccccHHHHHHHH------HHHHh-cCCC-Cc
Confidence            379999999998887553321           1   34678888865542     111211      11111 0100 12


Q ss_pred             eeeeecCCc-cccc--cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           77 CFVAASPGS-FYTR--LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        77 ~f~~~vpgS-Fy~~--l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      +-  .+.+. +...  -+|++++|+|+|+.++|++..                      ...+++...+=++|||++++.
T Consensus       103 v~--~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~~~~~~~l~~~gG~l~~~  158 (275)
T 3bkx_A          103 LT--VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS----------------------ANALALLFKNMAAVCDHVDVA  158 (275)
T ss_dssp             EE--EECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC----------------------HHHHHHHHHHHTTTCSEEEEE
T ss_pred             eE--EEECChhhhccCCCCCCCEEEEEEccchhhCCC----------------------HHHHHHHHHHHhCCCCEEEEE
Confidence            21  23333 3322  256889999999999999654                      123444444445569999998


Q ss_pred             EeecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          154 LLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       154 ~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      -.......+   ......+..+..... ..-..+.. ......+|++++++++++.| |++.+.+.+
T Consensus       159 ~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~s~~~l~~~l~~aG-f~~~~~~~~  219 (275)
T 3bkx_A          159 EWSMQPTAL---DQIGHLQAAMIQGLL-YAIAPSDV-ANIRTLITPDTLAQIAHDNT-WTYTAGTIV  219 (275)
T ss_dssp             EECSSCSSG---GGHHHHHHHHHHHHH-HHHSCCTT-CSCCCCCCHHHHHHHHHHHT-CEEEECCCB
T ss_pred             EecCCCCch---hhhhHHHHHHHHHHH-hhcccccc-ccccccCCHHHHHHHHHHCC-CeeEEEEEe
Confidence            876654322   111222221111110 00001122 34446799999999999999 999887766

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.54  E-value=9.6e-07  Score=81.04  Aligned_cols=100  Identities=16%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             CCcccEEEeccccccc-cCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960           93 HNFLDFVYSSYALHWL-SRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV  171 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWL-S~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a  171 (300)
                      ++++|+|+|+.++||+ ..                   ..|...+|+.-++-|+|||+++++.++..        .+...
T Consensus       112 ~~~fD~V~~~~~l~~~~~~-------------------~~~~~~~l~~~~~~LkpgG~li~~~~~~~--------~l~~~  164 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFES-------------------YEQADMMLRNACERLSPGGYFIGTTPNSF--------ELIRR  164 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGS-------------------HHHHHHHHHHHHTTEEEEEEEEEEEECHH--------HHHHH
T ss_pred             CCCEEEEEEecchhhccCC-------------------HHHHHHHHHHHHHHhCCCcEEEEecCChH--------HHHHH
Confidence            4599999999999997 44                   23567888889999999999999987652        12233


Q ss_pred             HHHHHHc--C-------CCchhhh------------ccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          172 LKDMISE--G-------LAEESKV------------KSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       172 l~~mv~e--G-------~i~~e~~------------d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      |...-..  |       ..+.+++            ... ..|.|..+.+++.+++++.| |++...+.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~-~~~~~~~~~~~~~~l~~~~G-~~~v~~~~f~  233 (313)
T 3bgv_A          165 LEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVV-DVPEFLVYFPLLNEMAKKYN-MKLVYKKTFL  233 (313)
T ss_dssp             HTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC----CCEEECCCHHHHHHHGGGGT-EEEEEEEEHH
T ss_pred             HHhhccCccCCeeEEEEeCCCCCCCCccceEEEEECCcc-cCcceEEcHHHHHHHHHHcC-cEEEEecCHH
Confidence            3221000  0       0011111            233 46778889999999999999 8888776553

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.54  E-value=2e-06  Score=77.26  Aligned_cols=106  Identities=17%  Similarity=0.225  Sum_probs=69.2

Q ss_pred             CccccccC-CCCcccEEEeccccccc-cCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           84 GSFYTRLF-PHNFLDFVYSSYALHWL-SRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        84 gSFy~~l~-P~~sv~~~~Ss~alHWL-S~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+..--+ |++++|+|+++.++||+ ..                   ..|...+|+.-++-|+|||++++......   
T Consensus       121 ~d~~~~~~~~~~~fD~v~~~~~l~~~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---  178 (298)
T 1ri5_A          121 QDSYGRHMDLGKEFDVISSQFSFHYAFST-------------------SESLDIAQRNIARHLRPGGYFIMTVPSRD---  178 (298)
T ss_dssp             SCTTTSCCCCSSCEEEEEEESCGGGGGSS-------------------HHHHHHHHHHHHHTEEEEEEEEEEEECHH---
T ss_pred             CCccccccCCCCCcCEEEECchhhhhcCC-------------------HHHHHHHHHHHHHhcCCCCEEEEEECCHH---
Confidence            34444334 68899999999999995 22                   34577888889999999999999886442   


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhh-----------------------ccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKV-----------------------KSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~-----------------------d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                           .+...+.   .. .+.....                       +.....|.++.+++|++.++++.| |++.+.+
T Consensus       179 -----~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aG-f~~v~~~  248 (298)
T 1ri5_A          179 -----VILERYK---QG-RMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLG-LSLVERK  248 (298)
T ss_dssp             -----HHHHHHH---HT-CCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTT-EEEEEEE
T ss_pred             -----HHHHHHc---cC-ccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcC-CEEEEec
Confidence                 1111111   11 1110000                       011023346789999999999999 9988876


Q ss_pred             EEe
Q 045960          219 TFN  221 (300)
Q Consensus       219 ~~~  221 (300)
                      .+.
T Consensus       249 ~~~  251 (298)
T 1ri5_A          249 GFI  251 (298)
T ss_dssp             EHH
T ss_pred             CHH
Confidence            653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.53  E-value=3.5e-07  Score=78.57  Aligned_cols=93  Identities=15%  Similarity=0.208  Sum_probs=63.0

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      .+.+++|+|+++.++| ...                      ...+|+.-.+-|+|||++++............   +  
T Consensus       112 ~~~~~fD~v~~~~~l~-~~~----------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---~--  163 (227)
T 3e8s_A          112 PVGKDYDLICANFALL-HQD----------------------IIELLSAMRTLLVPGGALVIQTLHPWSVADGD---Y--  163 (227)
T ss_dssp             CCCCCEEEEEEESCCC-SSC----------------------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTC---C--
T ss_pred             ccCCCccEEEECchhh-hhh----------------------HHHHHHHHHHHhCCCeEEEEEecCccccCccc---c--
Confidence            4455699999999999 222                      35677778889999999999887654321100   0  


Q ss_pred             HHHHHHHcCCCchhhhccc----cCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          171 VLKDMISEGLAEESKVKSF----EDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f----~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                            ..+ +..+.+..+    ...+.++++.+|++.+++++| |++.+++.
T Consensus       164 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~  208 (227)
T 3e8s_A          164 ------QDG-WREESFAGFAGDWQPMPWYFRTLASWLNALDMAG-LRLVSLQE  208 (227)
T ss_dssp             ------SCE-EEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT-EEEEEEEC
T ss_pred             ------ccc-cchhhhhccccCcccceEEEecHHHHHHHHHHcC-CeEEEEec
Confidence                  011 111112221    036678899999999999999 99988776

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.51  E-value=4.5e-07  Score=79.78  Aligned_cols=93  Identities=16%  Similarity=0.215  Sum_probs=67.3

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      .+.+..--+|++++|+|+++.+||+++.                    .|...+|+.-.+-|+|||++++......... 
T Consensus       146 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-  204 (254)
T 1xtp_A          146 LASMETATLPPNTYDLIVIQWTAIYLTD--------------------ADFVKFFKHCQQALTPNGYIFFKENCSTGDR-  204 (254)
T ss_dssp             ESCGGGCCCCSSCEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEEBC--CC-
T ss_pred             EccHHHCCCCCCCeEEEEEcchhhhCCH--------------------HHHHHHHHHHHHhcCCCeEEEEEecCCCccc-
Confidence            3445444467899999999999999532                    3577888888999999999999875322110 


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                                       .     .... ..+.+.++.+++++++++.| |++.+++..
T Consensus       205 -----------------~-----~~~~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  238 (254)
T 1xtp_A          205 -----------------F-----LVDK-EDSSLTRSDIHYKRLFNESG-VRVVKEAFQ  238 (254)
T ss_dssp             -----------------E-----EEET-TTTEEEBCHHHHHHHHHHHT-CCEEEEEEC
T ss_pred             -----------------c-----eecc-cCCcccCCHHHHHHHHHHCC-CEEEEeeec
Confidence                             0     1112 34456789999999999999 998887654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.51  E-value=1.2e-06  Score=74.80  Aligned_cols=157  Identities=11%  Similarity=0.111  Sum_probs=88.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..+..+...                +..+|+.-|+-..    .   +......... .+.. .++  ..+
T Consensus        46 ~vLdiG~G~G~~~~~l~~~----------------~~~~v~~~D~s~~----~---~~~a~~~~~~-~~~~-~~~--~~~   98 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ----------------SDFSIRALDFSKH----M---NEIALKNIAD-ANLN-DRI--QIV   98 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH----------------SEEEEEEEESCHH----H---HHHHHHHHHH-TTCT-TTE--EEE
T ss_pred             EEEEECCCCCHHHHHHHHc----------------CCCeEEEEECCHH----H---HHHHHHHHHh-cccc-Cce--EEE
Confidence            7999999999877654421                2367777775211    0   0111111111 1110 122  123


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+.+..--+|++++|+|+++.++||+..                      ...+|+.-.+-|+|||++++...-..    
T Consensus        99 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~~~~~~~~----  152 (219)
T 3dlc_A           99 QGDVHNIPIEDNYADLIVSRGSVFFWED----------------------VATAFREIYRILKSGGKTYIGGGFGN----  152 (219)
T ss_dssp             ECBTTBCSSCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEECCSS----
T ss_pred             EcCHHHCCCCcccccEEEECchHhhccC----------------------HHHHHHHHHHhCCCCCEEEEEeccCc----
Confidence            3445444478999999999999999633                      46678888899999999988752221    


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhcc-ccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKS-FEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~-f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                         ..+...+........   ..+.. + .-....++.+|++.++++.| |++.++...
T Consensus       153 ---~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~aG-f~~v~~~~~  203 (219)
T 3dlc_A          153 ---KELRDSISAEMIRKN---PDWKEFN-RKNISQENVERFQNVLDEIG-ISSYEIILG  203 (219)
T ss_dssp             ---HHHHHHHHHHHHHHC---TTHHHHH-HHHSSHHHHHHHHHHHHHHT-CSSEEEEEE
T ss_pred             ---HHHHHHHHHHHHHhH---HHHHhhh-hhccccCCHHHHHHHHHHcC-CCeEEEEec
Confidence               112222221111110   01111 1 11123348899999999999 877665533

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.51  E-value=6.1e-08  Score=85.79  Aligned_cols=113  Identities=20%  Similarity=0.233  Sum_probs=68.0

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      .+++..--+|++++|+|+++.++||+..                      ...+|+.-.+-|+|||++++..........
T Consensus        96 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  153 (253)
T 3g5l_A           96 QKAIEDIAIEPDAYNVVLSSLALHYIAS----------------------FDDICKKVYINLKSSGSFIFSVEHPVFTAD  153 (253)
T ss_dssp             ECCGGGCCCCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHSS
T ss_pred             EcchhhCCCCCCCeEEEEEchhhhhhhh----------------------HHHHHHHHHHHcCCCcEEEEEeCCCccccC
Confidence            3445444478899999999999999743                      567888888999999999998653210000


Q ss_pred             C------C--chHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 T------P--GEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~------~--~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      .      .  +..+...+.....++.... .+..- ....|.+|.+|++++++++| |++.+++..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~t~~~~~~~l~~aG-F~~~~~~e~  216 (253)
T 3g5l_A          154 GRQDWYTDETGNKLHWPVDRYFNESMRTS-HFLGE-DVQKYHRTVTTYIQTLLKNG-FQINSVIEP  216 (253)
T ss_dssp             SSCSCEECSSCCEEEEEECCTTCCCEEEE-EETTE-EEEEECCCHHHHHHHHHHTT-EEEEEEECC
T ss_pred             ccccceeccCCceEEEEeccccccceEEE-eeccc-cCccEecCHHHHHHHHHHcC-CeeeeeecC
Confidence            0      0  0000000000001111000 00111 24456779999999999999 999887654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.50  E-value=3.5e-07  Score=78.64  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV  171 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a  171 (300)
                      +++++|+|+++.+||++..                    .|+..+|+.-++-|+|||++++.+......           
T Consensus        99 ~~~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------  147 (211)
T 3e23_A           99 AIDAYDAVWAHACLLHVPR--------------------DELADVLKLIWRALKPGGLFYASYKSGEGE-----------  147 (211)
T ss_dssp             CCSCEEEEEECSCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEECCSSC-----------
T ss_pred             CCCcEEEEEecCchhhcCH--------------------HHHHHHHHHHHHhcCCCcEEEEEEcCCCcc-----------
Confidence            8899999999999999542                    357788898999999999999987533321           


Q ss_pred             HHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          172 LKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       172 l~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                                   ..+.+ ...+.+++.+++++++++.|-|++.+++....
T Consensus       148 -------------~~~~~-~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~  184 (211)
T 3e23_A          148 -------------GRDKL-ARYYNYPSEEWLRARYAEAGTWASVAVESSEG  184 (211)
T ss_dssp             -------------EECTT-SCEECCCCHHHHHHHHHHHCCCSEEEEEEEEE
T ss_pred             -------------ccccc-chhccCCCHHHHHHHHHhCCCcEEEEEEeccC
Confidence                         01233 44456789999999999997688888776643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.49  E-value=3.3e-06  Score=77.47  Aligned_cols=95  Identities=9%  Similarity=0.019  Sum_probs=67.2

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC-C
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH-A  162 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~-~  162 (300)
                      +.+..--+|++++|+|+++.++||+ .                      ...+|+.-.+-|+|||++++......+.. .
T Consensus       174 ~d~~~~~~~~~~fD~V~~~~~l~~~-~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  230 (312)
T 3vc1_A          174 CNMLDTPFDKGAVTASWNNESTMYV-D----------------------LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQ  230 (312)
T ss_dssp             CCTTSCCCCTTCEEEEEEESCGGGS-C----------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTTCS
T ss_pred             CChhcCCCCCCCEeEEEECCchhhC-C----------------------HHHHHHHHHHHcCCCcEEEEEEccccccccc
Confidence            4444434788999999999999996 2                      36677888899999999999887665432 1


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ..     ..+..+           +.. ..| ..++.+++++++++.| |++.+++.+
T Consensus       231 ~~-----~~~~~~-----------~~~-~~~-~~~s~~~~~~~l~~aG-f~~~~~~~~  269 (312)
T 3vc1_A          231 PS-----KWVSQI-----------NAH-FEC-NIHSRREYLRAMADNR-LVPHTIVDL  269 (312)
T ss_dssp             CC-----HHHHHH-----------HHH-HTC-CCCBHHHHHHHHHTTT-EEEEEEEEC
T ss_pred             hh-----HHHHHH-----------Hhh-hcC-CCCCHHHHHHHHHHCC-CEEEEEEeC
Confidence            11     111111           111 122 4778999999999999 998888765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.47  E-value=1.6e-06  Score=78.58  Aligned_cols=66  Identities=11%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +++-.--+|++|+|+|+++.++||+.                       ...+|+.-++-|||||+|++...+.....  
T Consensus        88 ~~~e~~~~~~~sfD~v~~~~~~h~~~-----------------------~~~~~~e~~rvLkpgG~l~~~~~~~~~~~--  142 (257)
T 4hg2_A           88 APAEDTGLPPASVDVAIAAQAMHWFD-----------------------LDRFWAELRRVARPGAVFAAVTYGLTRVD--  142 (257)
T ss_dssp             CCTTCCCCCSSCEEEEEECSCCTTCC-----------------------HHHHHHHHHHHEEEEEEEEEEEECCCBCC--
T ss_pred             hhhhhhcccCCcccEEEEeeehhHhh-----------------------HHHHHHHHHHHcCCCCEEEEEECCCCCCC--
Confidence            44444458999999999999999953                       24566677788999999998887665433  


Q ss_pred             CchHHHHHHHHHH
Q 045960          164 PGEPMLMVLKDMI  176 (300)
Q Consensus       164 ~~~~l~~al~~mv  176 (300)
                        ..+...++++.
T Consensus       143 --~~~~~~~~~~~  153 (257)
T 4hg2_A          143 --PEVDAVVDRLY  153 (257)
T ss_dssp             --HHHHHHHHHHH
T ss_pred             --HHHHHHHHHHH
Confidence              33455555543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.45  E-value=7.7e-07  Score=83.30  Aligned_cols=150  Identities=19%  Similarity=0.150  Sum_probs=92.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+...               .|..+++.-|+|.     ...  ...   ... .+. ..+  +.-
T Consensus       186 ~~vLDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~-----~~~--~~~---~~~-~~~-~~~--v~~  236 (348)
T 3lst_A          186 GTVADVGGGRGGFLLTVLRE---------------HPGLQGVLLDRAE-----VVA--RHR---LDA-PDV-AGR--WKV  236 (348)
T ss_dssp             EEEEEETCTTSHHHHHHHHH---------------CTTEEEEEEECHH-----HHT--TCC---CCC-GGG-TTS--EEE
T ss_pred             ceEEEECCccCHHHHHHHHH---------------CCCCEEEEecCHH-----Hhh--ccc---ccc-cCC-CCC--eEE
Confidence            37999999999877654431               1457888888852     221  000   000 000 011  334


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.|+|+ .-+|  ++|+++++.+||..++                    .+...+|+.-++-|+|||++++.-...++..
T Consensus       237 ~~~d~~-~~~p--~~D~v~~~~vlh~~~d--------------------~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~  293 (348)
T 3lst_A          237 VEGDFL-REVP--HADVHVLKRILHNWGD--------------------EDSVRILTNCRRVMPAHGRVLVIDAVVPEGN  293 (348)
T ss_dssp             EECCTT-TCCC--CCSEEEEESCGGGSCH--------------------HHHHHHHHHHHHTCCTTCEEEEEECCBCSSS
T ss_pred             EecCCC-CCCC--CCcEEEEehhccCCCH--------------------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCC
Confidence            678888 5567  9999999999997333                    2346788889999999999988754443322


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      ...   . ..+.++..-.           ...-..++.+|++++++++| |++.++..
T Consensus       294 ~~~---~-~~~~d~~~~~-----------~~~~~~~t~~e~~~ll~~aG-f~~~~~~~  335 (348)
T 3lst_A          294 DAH---Q-SKEMDFMMLA-----------ARTGQERTAAELEPLFTAAG-LRLDRVVG  335 (348)
T ss_dssp             SCC---H-HHHHHHHHHH-----------TTSCCCCBHHHHHHHHHHTT-EEEEEEEE
T ss_pred             Ccc---h-hhhcChhhhh-----------cCCCcCCCHHHHHHHHHHCC-CceEEEEE
Confidence            111   1 1122211100           11223578999999999999 99887764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.43  E-value=4.2e-06  Score=79.15  Aligned_cols=151  Identities=17%  Similarity=0.250  Sum_probs=93.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+...               -|.++++.-|+|.     .......            .++  +.-
T Consensus       205 ~~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~-----~~~~a~~------------~~~--v~~  250 (368)
T 3reo_A          205 TTIVDVGGGTGAVASMIVAK---------------YPSINAINFDLPH-----VIQDAPA------------FSG--VEH  250 (368)
T ss_dssp             SEEEEETCTTSHHHHHHHHH---------------CTTCEEEEEECHH-----HHTTCCC------------CTT--EEE
T ss_pred             CEEEEeCCCcCHHHHHHHHh---------------CCCCEEEEEehHH-----HHHhhhh------------cCC--CEE
Confidence            37999999999877654431               2457888888742     2211111            022  334


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.|+|+. -+|..  |+++++++||+++.                    .+...+|+.-++-|+|||++++.=.-.++..
T Consensus       251 ~~~d~~~-~~p~~--D~v~~~~vlh~~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~  307 (368)
T 3reo_A          251 LGGDMFD-GVPKG--DAIFIKWICHDWSD--------------------EHCLKLLKNCYAALPDHGKVIVAEYILPPSP  307 (368)
T ss_dssp             EECCTTT-CCCCC--SEEEEESCGGGBCH--------------------HHHHHHHHHHHHHSCTTCEEEEEECCCCSSC
T ss_pred             EecCCCC-CCCCC--CEEEEechhhcCCH--------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence            6788887 57865  99999999996432                    2456788888999999999988754333221


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ......-...+.++..-.         . ...-..++.+|++++++++| |++.++...
T Consensus       308 ~~~~~~~~~~~~d~~~~~---------~-~~~g~~rt~~e~~~ll~~AG-F~~v~~~~~  355 (368)
T 3reo_A          308 DPSIATKVVIHTDALMLA---------Y-NPGGKERTEKEFQALAMASG-FRGFKVASC  355 (368)
T ss_dssp             CCCHHHHHHHHHHHHHHH---------H-SSBCCCCCHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             CCchhhhHHHhhhHHHHh---------h-cCCCccCCHHHHHHHHHHCC-CeeeEEEEe
Confidence            111000011122221110         0 11234578999999999999 998777655

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.43  E-value=8.9e-07  Score=77.08  Aligned_cols=106  Identities=14%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+...            +     .+|+.-|.-.+--..       ....... .+.   +  +..
T Consensus        39 ~~vLdiG~G~G~~~~~l~~~------------~-----~~~~~~D~s~~~~~~-------a~~~~~~-~~~---~--~~~   88 (246)
T 1y8c_A           39 DDYLDLACGTGNLTENLCPK------------F-----KNTWAVDLSQEMLSE-------AENKFRS-QGL---K--PRL   88 (246)
T ss_dssp             TEEEEETCTTSTTHHHHGGG------------S-----SEEEEECSCHHHHHH-------HHHHHHH-TTC---C--CEE
T ss_pred             CeEEEeCCCCCHHHHHHHHC------------C-----CcEEEEECCHHHHHH-------HHHHHhh-cCC---C--eEE
Confidence            37999999999988755421            1     356666642111100       0111111 110   1  122


Q ss_pred             cCCccccccCCCCcccEEEecc-ccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSY-ALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~-alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      +.+.+..--+| +++|+|+++. +|||+..                   ..|...+|+.-++-|+|||++++.+...
T Consensus        89 ~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A           89 ACQDISNLNIN-RKFDLITCCLDSTNYIID-------------------SDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             ECCCGGGCCCS-CCEEEEEECTTGGGGCCS-------------------HHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             EecccccCCcc-CCceEEEEcCccccccCC-------------------HHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            34455443455 8899999999 9999643                   3467888999999999999999987643

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.40  E-value=3e-06  Score=77.48  Aligned_cols=162  Identities=10%  Similarity=0.053  Sum_probs=92.3

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+..              ...|..+|+.-|+-..=-..       ....... .+.. .+  +..
T Consensus       120 ~~vLDiGcG~G~~~~~la~--------------~~~~~~~v~gvD~s~~~~~~-------a~~~~~~-~~~~-~~--v~~  174 (305)
T 3ocj_A          120 CVVASVPCGWMSELLALDY--------------SACPGVQLVGIDYDPEALDG-------ATRLAAG-HALA-GQ--ITL  174 (305)
T ss_dssp             CEEEETTCTTCHHHHTSCC--------------TTCTTCEEEEEESCHHHHHH-------HHHHHTT-STTG-GG--EEE
T ss_pred             CEEEEecCCCCHHHHHHHH--------------hcCCCCeEEEEECCHHHHHH-------HHHHHHh-cCCC-Cc--eEE
Confidence            3799999999988764320              12345677777752110000       0001100 0100 11  222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+.+..--+| +++|+|+++.++||+..                   ......+|+.-.+-|+|||++++...+++...
T Consensus       175 ~~~d~~~~~~~-~~fD~v~~~~~~~~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~  234 (305)
T 3ocj_A          175 HRQDAWKLDTR-EGYDLLTSNGLNIYEPD-------------------DARVTELYRRFWQALKPGGALVTSFLTPPPAL  234 (305)
T ss_dssp             EECCGGGCCCC-SCEEEEECCSSGGGCCC-------------------HHHHHHHHHHHHHHEEEEEEEEEECCCCCTTT
T ss_pred             EECchhcCCcc-CCeEEEEECChhhhcCC-------------------HHHHHHHHHHHHHhcCCCeEEEEEecCCCCcc
Confidence            44666665566 99999999999999544                   12244578888899999999999887665432


Q ss_pred             CCC------c--hHHHHHHHHHHHcCCCchhhhccccCCC-cccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          162 ATP------G--EPMLMVLKDMISEGLAEESKVKSFEDFP-IYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       162 ~~~------~--~~l~~al~~mv~eG~i~~e~~d~f~~~P-~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      ...      .  .........+..         +.. .-. ..+++.+|+++.+++.| |++.+++.
T Consensus       235 ~~~~~w~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~l~~aG-F~~v~~~~  290 (305)
T 3ocj_A          235 SPDSPWDMQAIDPHDLQLQQLVFT---------RLI-QPRWNALRTHAQTRAQLEEAG-FTDLRFED  290 (305)
T ss_dssp             CTTCCCCGGGSCHHHHHHHHHHHH---------HTT-CCSCCCCCCHHHHHHHHHHTT-CEEEEEEC
T ss_pred             cccccceeeccccchhhhhhhHHH---------HHH-hhhhhccCCHHHHHHHHHHCC-CEEEEEEc
Confidence            111      0  000000000001         111 111 14579999999999999 99887775

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.40  E-value=1.8e-06  Score=80.42  Aligned_cols=154  Identities=15%  Similarity=0.136  Sum_probs=93.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+..        .       .|..+++.-|+|.  .-...+.      .... .+.. .+  +..
T Consensus       181 ~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~--~~~~a~~------~~~~-~~~~-~~--v~~  233 (352)
T 3mcz_A          181 RTVIDLAGGHGTYLAQVLR--------R-------HPQLTGQIWDLPT--TRDAARK------TIHA-HDLG-GR--VEF  233 (352)
T ss_dssp             CEEEEETCTTCHHHHHHHH--------H-------CTTCEEEEEECGG--GHHHHHH------HHHH-TTCG-GG--EEE
T ss_pred             CEEEEeCCCcCHHHHHHHH--------h-------CCCCeEEEEECHH--HHHHHHH------HHHh-cCCC-Cc--eEE
Confidence            4799999999987665442        1       1347778889853  2222221      1111 1100 11  334


Q ss_pred             cCCcccccc-CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960           82 SPGSFYTRL-FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF  160 (300)
Q Consensus        82 vpgSFy~~l-~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~  160 (300)
                      +.|+|...- ++++.+|+++++.+||+++.                    .+...+|+.-.+-|+|||++++.-...++.
T Consensus       234 ~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  293 (352)
T 3mcz_A          234 FEKNLLDARNFEGGAADVVMLNDCLHYFDA--------------------REAREVIGHAAGLVKPGGALLILTMTMNDD  293 (352)
T ss_dssp             EECCTTCGGGGTTCCEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHTEEEEEEEEEEEECCCTT
T ss_pred             EeCCcccCcccCCCCccEEEEecccccCCH--------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence            667777654 35567999999999998533                    345778888899999999998876554433


Q ss_pred             CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEE
Q 045960          161 HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQE  216 (300)
Q Consensus       161 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~  216 (300)
                      ....   ....+.++..--         . ..-...++.+|+++++++.| |++.+
T Consensus       294 ~~~~---~~~~~~~~~~~~---------~-~~~~~~~t~~e~~~ll~~aG-f~~~~  335 (352)
T 3mcz_A          294 RVTP---ALSADFSLHMMV---------N-TNHGELHPTPWIAGVVRDAG-LAVGE  335 (352)
T ss_dssp             SSSS---HHHHHHHHHHHH---------H-STTCCCCCHHHHHHHHHHTT-CEEEE
T ss_pred             CCCC---chHHHhhHHHHh---------h-CCCCCcCCHHHHHHHHHHCC-Cceee
Confidence            2111   112222221100         0 01123468999999999999 98877

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.39  E-value=1.6e-06  Score=74.94  Aligned_cols=79  Identities=10%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      +++|+|++..++|++..                    .|...+|+.-++-|||||++++.....+.              
T Consensus       100 ~~fD~v~~~~~l~~l~~--------------------~~~~~~l~~~~r~LkpgG~~~l~~~~~~~--------------  145 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALPA--------------------DMRERYVQHLEALMPQACSGLLITLEYDQ--------------  145 (203)
T ss_dssp             HSEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHSCSEEEEEEEEESSCS--------------
T ss_pred             CCEEEEEECcchhhCCH--------------------HHHHHHHHHHHHHcCCCcEEEEEEEecCc--------------
Confidence            78999999999999532                    24567788889999999996655532211              


Q ss_pred             HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                           +        .. .-|.|..+.+|++..++. | |++..++....
T Consensus       146 -----~--------~~-~~~~~~~~~~el~~~~~~-g-f~i~~~~~~~~  178 (203)
T 1pjz_A          146 -----A--------LL-EGPPFSVPQTWLHRVMSG-N-WEVTKVGGQDT  178 (203)
T ss_dssp             -----S--------SS-SSCCCCCCHHHHHHTSCS-S-EEEEEEEESSC
T ss_pred             -----c--------cc-CCCCCCCCHHHHHHHhcC-C-cEEEEeccccc
Confidence                 0        11 223345789999999997 7 99988887654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.39  E-value=2.9e-06  Score=79.98  Aligned_cols=155  Identities=14%  Similarity=0.178  Sum_probs=92.7

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...               .|..+++.-|+|.  .-...+      ..... .+.. .+  +.-+
T Consensus       182 ~vlDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~~--~~~~a~------~~~~~-~~~~-~~--v~~~  234 (363)
T 3dp7_A          182 RLLDIGGNTGKWATQCVQY---------------NKEVEVTIVDLPQ--QLEMMR------KQTAG-LSGS-ER--IHGH  234 (363)
T ss_dssp             EEEEESCTTCHHHHHHHHH---------------STTCEEEEEECHH--HHHHHH------HHHTT-CTTG-GG--EEEE
T ss_pred             EEEEeCCCcCHHHHHHHHh---------------CCCCEEEEEeCHH--HHHHHH------HHHHh-cCcc-cc--eEEE
Confidence            7999999999877654421               1457888888752  111111      11111 0100 11  3446


Q ss_pred             CCcccccc--CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960           83 PGSFYTRL--FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF  160 (300)
Q Consensus        83 pgSFy~~l--~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~  160 (300)
                      .|+|+..-  +| +++|+++++..||.++.                    .+...+|+.-++-|+|||++++.=...++.
T Consensus       235 ~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  293 (363)
T 3dp7_A          235 GANLLDRDVPFP-TGFDAVWMSQFLDCFSE--------------------EEVISILTRVAQSIGKDSKVYIMETLWDRQ  293 (363)
T ss_dssp             ECCCCSSSCCCC-CCCSEEEEESCSTTSCH--------------------HHHHHHHHHHHHHCCTTCEEEEEECCTTSC
T ss_pred             EccccccCCCCC-CCcCEEEEechhhhCCH--------------------HHHHHHHHHHHHhcCCCcEEEEEeeccCCc
Confidence            78888752  67 88999999999985332                    245678888889999999998865433322


Q ss_pred             CCCCchH--HHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          161 HATPGEP--MLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       161 ~~~~~~~--l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      .... ..  +.....+|..          .. ......+|.+|++++++++| |++.++.
T Consensus       294 ~~~~-~~~~~~~~~~~~~~----------~~-~~~~~~~t~~e~~~ll~~AG-f~~v~~~  340 (363)
T 3dp7_A          294 RYET-ASYCLTQISLYFTA----------MA-NGNSKMFHSDDLIRCIENAG-LEVEEIQ  340 (363)
T ss_dssp             SSHH-HHHHHHHHHHHHHH----------SS-CSSCCSCCHHHHHHHHHTTT-EEESCCC
T ss_pred             cccc-hhhHHHHhhhhHHh----------hh-CCCCcccCHHHHHHHHHHcC-CeEEEEE
Confidence            1100 11  1111111100          01 22334579999999999999 8876654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.38  E-value=2.7e-06  Score=80.07  Aligned_cols=151  Identities=17%  Similarity=0.166  Sum_probs=92.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+.        ++       -|.+.+..-|+|.     +-   ......... .+  ..+  +..+
T Consensus       182 ~v~DvGgG~G~~~~~l~--------~~-------~p~~~~~~~dlp~-----v~---~~a~~~~~~-~~--~~r--v~~~  233 (353)
T 4a6d_A          182 LMCDLGGGAGALAKECM--------SL-------YPGCKITVFDIPE-----VV---WTAKQHFSF-QE--EEQ--IDFQ  233 (353)
T ss_dssp             EEEEETCTTSHHHHHHH--------HH-------CSSCEEEEEECHH-----HH---HHHHHHSCC-----CCS--EEEE
T ss_pred             eEEeeCCCCCHHHHHHH--------Hh-------CCCceeEeccCHH-----HH---HHHHHhhhh-cc--cCc--eeee
Confidence            69999999997655333        22       2567888889874     11   111111111 01  122  4457


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      +|+|+..-.|.  .|+++.+..||-.++                    .+-..+|+.-++-|+|||++++.=.-.++...
T Consensus       234 ~gD~~~~~~~~--~D~~~~~~vlh~~~d--------------------~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~  291 (353)
T 4a6d_A          234 EGDFFKDPLPE--ADLYILARVLHDWAD--------------------GKCSHLLERIYHTCKPGGGILVIESLLDEDRR  291 (353)
T ss_dssp             ESCTTTSCCCC--CSEEEEESSGGGSCH--------------------HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSC
T ss_pred             cCccccCCCCC--ceEEEeeeecccCCH--------------------HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCC
Confidence            89999875554  599999999994222                    23467888889999999999886433332211


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      ..   ....+.+|.--          . ...--.||.+|++++++++| |++.++.
T Consensus       292 ~~---~~~~~~dl~ml----------~-~~~g~ert~~e~~~ll~~AG-f~~v~v~  332 (353)
T 4a6d_A          292 GP---LLTQLYSLNML----------V-QTEGQERTPTHYHMLLSSAG-FRDFQFK  332 (353)
T ss_dssp             CC---HHHHHHHHHHH----------H-SSSCCCCCHHHHHHHHHHHT-CEEEEEE
T ss_pred             CC---HHHHHHHHHHH----------H-hCCCcCCCHHHHHHHHHHCC-CceEEEE
Confidence            11   12222222100          0 12234589999999999999 9887764

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.38  E-value=4.7e-06  Score=78.76  Aligned_cols=151  Identities=20%  Similarity=0.215  Sum_probs=93.6

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+..        .       .|.++++.-|+|.     .......            .++  +.-
T Consensus       203 ~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~-----~~~~a~~------------~~~--v~~  248 (364)
T 3p9c_A          203 GTLVDVGGGVGATVAAIAA--------H-------YPTIKGVNFDLPH-----VISEAPQ------------FPG--VTH  248 (364)
T ss_dssp             SEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH-----HHTTCCC------------CTT--EEE
T ss_pred             CEEEEeCCCCCHHHHHHHH--------H-------CCCCeEEEecCHH-----HHHhhhh------------cCC--eEE
Confidence            3799999999987664432        1       2457788888752     2221111            022  334


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.|+|+. -+|..  |+++++++||..+.                    +|...+|+.-++-|+|||++++.=...++..
T Consensus       249 ~~~D~~~-~~p~~--D~v~~~~vlh~~~d--------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~  305 (364)
T 3p9c_A          249 VGGDMFK-EVPSG--DTILMKWILHDWSD--------------------QHCATLLKNCYDALPAHGKVVLVQCILPVNP  305 (364)
T ss_dssp             EECCTTT-CCCCC--SEEEEESCGGGSCH--------------------HHHHHHHHHHHHHSCTTCEEEEEECCBCSSC
T ss_pred             EeCCcCC-CCCCC--CEEEehHHhccCCH--------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence            7789988 57865  99999999996332                    3467788888999999999988754443321


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ..........+.++..-         .. +..-..+|.+|++++++++| |++.++...
T Consensus       306 ~~~~~~~~~~~~d~~m~---------~~-~~~g~~rt~~e~~~ll~~AG-F~~v~~~~~  353 (364)
T 3p9c_A          306 EANPSSQGVFHVDMIML---------AH-NPGGRERYEREFQALARGAG-FTGVKSTYI  353 (364)
T ss_dssp             CSSHHHHHHHHHHHHHH---------HH-CSSCCCCBHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             CcchhhhhHHHhHHHHH---------hc-ccCCccCCHHHHHHHHHHCC-CceEEEEEc
Confidence            11100001112221110         00 12223578999999999999 998877655

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.37  E-value=2e-06  Score=79.64  Aligned_cols=107  Identities=16%  Similarity=0.240  Sum_probs=66.9

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCch----
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGE----  166 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~----  166 (300)
                      +|++++|+|.|..++||+-..+                   |...+|+.-++-|||||+|+++.+.+..-......    
T Consensus       125 ~~~~~FD~V~~~~~lhy~~~~~-------------------~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~  185 (302)
T 2vdw_A          125 FYFGKFNIIDWQFAIHYSFHPR-------------------HYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFI  185 (302)
T ss_dssp             CCSSCEEEEEEESCGGGTCSTT-------------------THHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEE
T ss_pred             ccCCCeeEEEECchHHHhCCHH-------------------HHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcc
Confidence            6788999999999999964422                   24678999999999999999988754321000000    


Q ss_pred             HHHHHHHHHHHcC-----CCchhh-------hccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          167 PMLMVLKDMISEG-----LAEESK-------VKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       167 ~l~~al~~mv~eG-----~i~~e~-------~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      .....+   ..+.     .++.+.       ...- ..|-|+.+++|+++++++.| |++.....+.
T Consensus       186 i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~v~~~el~~l~~~~G-l~lv~~~~f~  247 (302)
T 2vdw_A          186 IHKNLP---SSENYMSVEKIADDRIVVYNPSTMST-PMTEYIIKKNDIVRVFNEYG-FVLVDNVDFA  247 (302)
T ss_dssp             CCSSSC---TTTSEEEECEEETTEEEEBCTTTBSS-CEEEECCCHHHHHHHHHHTT-EEEEEEEEHH
T ss_pred             cccccc---cccceeeeccccccccceeeccccCC-CceeeeeEHHHHHHHHHHCC-CEEEEecChH
Confidence            000000   0000     000111       0123 45668889999999999999 8887776553

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.37  E-value=1.8e-06  Score=80.03  Aligned_cols=151  Identities=18%  Similarity=0.129  Sum_probs=89.6

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|+|+||++|..+..+.+        .       .|..++..-|+|.     ...   ........ .+.. .+  +.-
T Consensus       171 ~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~-----~~~---~a~~~~~~-~~~~-~~--v~~  223 (332)
T 3i53_A          171 GHVVDVGGGSGGLLSALLT--------A-------HEDLSGTVLDLQG-----PAS---AAHRRFLD-TGLS-GR--AQV  223 (332)
T ss_dssp             SEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH-----HHH---HHHHHHHH-TTCT-TT--EEE
T ss_pred             CEEEEeCCChhHHHHHHHH--------H-------CCCCeEEEecCHH-----HHH---HHHHhhhh-cCcC-cC--eEE
Confidence            3799999999966653322        1       1345666667642     111   11111111 1110 12  233


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.++|+ .-+|. ++|+++++.+||..++                    .+...+|+.-++-|+|||++++.-.-.++..
T Consensus       224 ~~~d~~-~~~p~-~~D~v~~~~vlh~~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~  281 (332)
T 3i53_A          224 VVGSFF-DPLPA-GAGGYVLSAVLHDWDD--------------------LSAVAILRRCAEAAGSGGVVLVIEAVAGDEH  281 (332)
T ss_dssp             EECCTT-SCCCC-SCSEEEEESCGGGSCH--------------------HHHHHHHHHHHHHHTTTCEEEEEECCCC---
T ss_pred             ecCCCC-CCCCC-CCcEEEEehhhccCCH--------------------HHHHHHHHHHHHhcCCCCEEEEEeecCCCCC
Confidence            668888 44676 8999999999997333                    2356788888899999999988754433321


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      + .  ...+..+ |+.              ..-..+|.+|++++++++| |++.++...
T Consensus       282 ~-~--~~~d~~~-~~~--------------~~~~~~t~~e~~~ll~~aG-f~~~~~~~~  321 (332)
T 3i53_A          282 A-G--TGMDLRM-LTY--------------FGGKERSLAELGELAAQAG-LAVRAAHPI  321 (332)
T ss_dssp             C-C--HHHHHHH-HHH--------------HSCCCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred             c-c--HHHHHHH-Hhh--------------CCCCCCCHHHHHHHHHHCC-CEEEEEEEC
Confidence            1 1  1111111 111              1223578999999999999 998877543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.36  E-value=3e-06  Score=71.43  Aligned_cols=87  Identities=10%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +.+..--+ ++++|+++++.++||+..                    .|...+|+.-.+-|+|||++++.........+ 
T Consensus        87 ~d~~~~~~-~~~~D~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-  144 (199)
T 2xvm_A           87 VDLNNLTF-DRQYDFILSTVVLMFLEA--------------------KTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-  144 (199)
T ss_dssp             CCGGGCCC-CCCEEEEEEESCGGGSCG--------------------GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-
T ss_pred             cchhhCCC-CCCceEEEEcchhhhCCH--------------------HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC-
Confidence            34444333 788999999999999652                    23677888888999999998776543322110 


Q ss_pred             CchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          164 PGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       164 ~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                                              .- ....+..+.+|+++.++.   |++.+.+..
T Consensus       145 ------------------------~~-~~~~~~~~~~~l~~~~~~---f~~~~~~~~  173 (199)
T 2xvm_A          145 ------------------------CT-VGFPFAFKEGELRRYYEG---WERVKYNED  173 (199)
T ss_dssp             ------------------------CC-SCCSCCBCTTHHHHHTTT---SEEEEEECC
T ss_pred             ------------------------CC-CCCCCccCHHHHHHHhcC---CeEEEeccc
Confidence                                    00 112245688999999975   998887644

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.36  E-value=2.9e-06  Score=73.93  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=67.4

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+.+..--+|++++|+++++.++|++..                      ...+|+.-++-|+|||++++.........
T Consensus        94 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  151 (243)
T 3bkw_A           94 ERADLDKLHLPQDSFDLAYSSLALHYVED----------------------VARLFRTVHQALSPGGHFVFSTEHPIYMA  151 (243)
T ss_dssp             EECCGGGCCCCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHC
T ss_pred             EEcChhhccCCCCCceEEEEeccccccch----------------------HHHHHHHHHHhcCcCcEEEEEeCCccccc
Confidence            33455554578899999999999999643                      45677778889999999999875321000


Q ss_pred             CCCchHHHHHHH--HHHHcCCCchh----hhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLK--DMISEGLAEES----KVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~--~mv~eG~i~~e----~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ..........-.  .+...+...+.    .+-.- ....|.++.+|+.++++++| |++.+++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~l~~aG-F~~~~~~~~  214 (243)
T 3bkw_A          152 PARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK-GVVKHHRTVGTTLNALIRSG-FAIEHVEEF  214 (243)
T ss_dssp             CSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH-SCCEEECCHHHHHHHHHHTT-CEEEEEEEC
T ss_pred             CcCcceeecCCCceEEeecccccccceeeeeccC-ceEEEeccHHHHHHHHHHcC-CEeeeeccC
Confidence            000000000000  00000000000    00001 24456789999999999999 998887654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.36  E-value=8.4e-06  Score=67.38  Aligned_cols=80  Identities=16%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHH
Q 045960           89 RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPM  168 (300)
Q Consensus        89 ~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l  168 (300)
                      .-+|++++|+++++.++|++.+                      ...+|+.-.+-|+|||++++.-....+...      
T Consensus        69 ~~~~~~~~D~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------  120 (170)
T 3i9f_A           69 KEIPDNSVDFILFANSFHDMDD----------------------KQHVISEVKRILKDDGRVIIIDWRKENTGI------  120 (170)
T ss_dssp             GGSCTTCEEEEEEESCSTTCSC----------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSS------
T ss_pred             CCCCCCceEEEEEccchhcccC----------------------HHHHHHHHHHhcCCCCEEEEEEcCcccccc------
Confidence            3368899999999999999643                      456777788899999999998765443210      


Q ss_pred             HHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          169 LMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       169 ~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                                +           .......+.+|++.+++  | |++.+....
T Consensus       121 ----------~-----------~~~~~~~~~~~~~~~l~--G-f~~~~~~~~  148 (170)
T 3i9f_A          121 ----------G-----------PPLSIRMDEKDYMGWFS--N-FVVEKRFNP  148 (170)
T ss_dssp             ----------S-----------SCGGGCCCHHHHHHHTT--T-EEEEEEECS
T ss_pred             ----------C-----------chHhhhcCHHHHHHHHh--C-cEEEEccCC
Confidence                      0           11123468999999999  6 998777654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.35  E-value=1.8e-06  Score=75.92  Aligned_cols=91  Identities=13%  Similarity=0.193  Sum_probs=65.9

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +.+..-.+|++++|+|+++.++|++..                    .++..+|+.-.+-|+|||++++.-...... . 
T Consensus       135 ~d~~~~~~~~~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~-  192 (241)
T 2ex4_A          135 CGLQDFTPEPDSYDVIWIQWVIGHLTD--------------------QHLAEFLRRCKGSLRPNGIIVIKDNMAQEG-V-  192 (241)
T ss_dssp             CCGGGCCCCSSCEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEEEBSSS-E-
T ss_pred             cChhhcCCCCCCEEEEEEcchhhhCCH--------------------HHHHHHHHHHHHhcCCCeEEEEEEccCCCc-c-
Confidence            445444567789999999999999543                    235678888889999999999977655420 0 


Q ss_pred             CchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          164 PGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       164 ~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                                      .     ++..  -+.+.++.+|+++++++.| |++.+.+..
T Consensus       193 ----------------~-----~~~~--~~~~~~~~~~~~~~l~~aG-f~~~~~~~~  225 (241)
T 2ex4_A          193 ----------------I-----LDDV--DSSVCRDLDVVRRIICSAG-LSLLAEERQ  225 (241)
T ss_dssp             ----------------E-----EETT--TTEEEEBHHHHHHHHHHTT-CCEEEEEEC
T ss_pred             ----------------e-----eccc--CCcccCCHHHHHHHHHHcC-CeEEEeeec
Confidence                            0     1111  2335569999999999999 998887755

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.35  E-value=5.8e-06  Score=70.33  Aligned_cols=94  Identities=9%  Similarity=0.030  Sum_probs=67.4

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+.+..--+|++++|+|+++. .||    +                 ..|...+|+.-.+-|+|||++++......+.. 
T Consensus        82 ~~d~~~~~~~~~~fD~v~~~~-~~~----~-----------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-  138 (202)
T 2kw5_A           82 QSNLADFDIVADAWEGIVSIF-CHL----P-----------------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-  138 (202)
T ss_dssp             CCBTTTBSCCTTTCSEEEEEC-CCC----C-----------------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-
T ss_pred             EcChhhcCCCcCCccEEEEEh-hcC----C-----------------HHHHHHHHHHHHHhcCCCcEEEEEEecccccc-
Confidence            344444447889999999964 455    1                 23567788888899999999999987654310 


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecc
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSW  224 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~  224 (300)
                                     .+      .... .-+.++++++|++++++  | |++.+++....+.
T Consensus       139 ---------------~~------~~~~-~~~~~~~~~~~l~~~l~--G-f~v~~~~~~~~~~  175 (202)
T 2kw5_A          139 ---------------YN------TGGP-KDLDLLPKLETLQSELP--S-LNWLIANNLERNL  175 (202)
T ss_dssp             ---------------GT------SCCS-SSGGGCCCHHHHHHHCS--S-SCEEEEEEEEEEC
T ss_pred             ---------------CC------CCCC-CcceeecCHHHHHHHhc--C-ceEEEEEEEEeec
Confidence                           00      1122 34578899999999999  6 9999998887663

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.35  E-value=3.8e-06  Score=73.14  Aligned_cols=44  Identities=16%  Similarity=0.268  Sum_probs=36.6

Q ss_pred             CcccEEEecc-ccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           94 NFLDFVYSSY-ALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        94 ~sv~~~~Ss~-alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +++|+++++. ++||+..                   ..|...+|+.-++-|+|||++++.+..
T Consensus        95 ~~fD~v~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           95 EPVDAITILCDSLNYLQT-------------------EADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             SCEEEEEECTTGGGGCCS-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCcCEEEEeCCchhhcCC-------------------HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            7899999987 9999644                   345778888888999999999997753

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.31  E-value=2.9e-06  Score=75.39  Aligned_cols=44  Identities=11%  Similarity=0.175  Sum_probs=37.6

Q ss_pred             CCcccEEEecc-ccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           93 HNFLDFVYSSY-ALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        93 ~~sv~~~~Ss~-alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ++++|+|+++. +|||+..                   ..|...+|+.-++-|+|||++++...
T Consensus       108 ~~~fD~v~~~~~~l~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          108 GRRFSAVTCMFSSIGHLAG-------------------QAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             SCCEEEEEECTTGGGGSCH-------------------HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             cCCcCEEEEcCchhhhcCC-------------------HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            78999999998 9999644                   34678889999999999999999754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.31  E-value=1.1e-06  Score=79.98  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             CCcccEEE-eccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC--CCCchHHH
Q 045960           93 HNFLDFVY-SSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH--ATPGEPML  169 (300)
Q Consensus        93 ~~sv~~~~-Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~--~~~~~~l~  169 (300)
                      ++++|+|+ ++.++||+..                    .|...+|+.-++-|+|||++++.........  +....   
T Consensus       148 ~~~fD~v~~~~~~~~~~~~--------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~---  204 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDE--------------------ADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERK---  204 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC----
T ss_pred             CCCcCEEEECCcccccCCH--------------------HHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhcc---
Confidence            68899887 5688998532                    3567888889999999999999987654210  00000   


Q ss_pred             HHHHHHHHcCC---Cc--------------------hhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          170 MVLKDMISEGL---AE--------------------ESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       170 ~al~~mv~eG~---i~--------------------~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                      ..+..  ..|.   +.                    ...+..+ ....++++++|++++++++| |++.+++.+..
T Consensus       205 ~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~el~~ll~~aG-F~v~~~~~~~~  276 (299)
T 3g2m_A          205 QELPG--RSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVC-THRRRLLAPDQVVRELVRSG-FDVIAQTPFAS  276 (299)
T ss_dssp             --------------CCEEEEEEEEEEEEEEEESCC--CCCCEE-EEEEEEECHHHHHHHHHHTT-CEEEEEEEECT
T ss_pred             ceeec--CCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEE-EEEEEEeCHHHHHHHHHHCC-CEEEEEEecCC
Confidence            00000  0010   00                    0011223 34556789999999999999 99999887753

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.30  E-value=1.3e-06  Score=78.42  Aligned_cols=86  Identities=22%  Similarity=0.194  Sum_probs=63.9

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ..++|+|+|+.+|||+..-                  ..|+...|+.-++-|||||+|++......+.  +         
T Consensus       154 ~~~fD~V~~~~~l~~i~~~------------------~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~--~---------  204 (263)
T 2a14_A          154 LPLADCVLTLLAMECACCS------------------LDAYRAALCNLASLLKPGGHLVTTVTLRLPS--Y---------  204 (263)
T ss_dssp             CCCEEEEEEESCHHHHCSS------------------HHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--E---------
T ss_pred             cCCCCEeeehHHHHHhcCC------------------HHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--c---------
Confidence            5689999999999996431                  2467888999999999999999986432210  0         


Q ss_pred             HHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          173 KDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       173 ~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                          ..|        .- .++.+..+.+|+...++++| |++.+++...
T Consensus       205 ----~~g--------~~-~~~~~~~~~~~l~~~l~~aG-F~i~~~~~~~  239 (263)
T 2a14_A          205 ----MVG--------KR-EFSCVALEKGEVEQAVLDAG-FDIEQLLHSP  239 (263)
T ss_dssp             ----EET--------TE-EEECCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred             ----eeC--------Ce-EeeccccCHHHHHHHHHHCC-CEEEEEeecc
Confidence                011        11 24456679999999999999 9999888764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.30  E-value=3.8e-06  Score=71.98  Aligned_cols=81  Identities=16%  Similarity=0.179  Sum_probs=55.8

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHH
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML  169 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~  169 (300)
                      -+|++++|+|+++.++||+..                      ...+|+.-.+-|+|||++++.......       ...
T Consensus        90 ~~~~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~-------~~~  140 (211)
T 2gs9_A           90 PFPGESFDVVLLFTTLEFVED----------------------VERVLLEARRVLRPGGALVVGVLEALS-------PWA  140 (211)
T ss_dssp             CSCSSCEEEEEEESCTTTCSC----------------------HHHHHHHHHHHEEEEEEEEEEEECTTS-------HHH
T ss_pred             CCCCCcEEEEEEcChhhhcCC----------------------HHHHHHHHHHHcCCCCEEEEEecCCcC-------cHH
Confidence            367889999999999999654                      456777788899999999999875532       112


Q ss_pred             HHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHH
Q 045960          170 MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVK  207 (300)
Q Consensus       170 ~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~  207 (300)
                      .....+...|       ... .-...++|++|++++++
T Consensus       141 ~~~~~~~~~~-------~~~-~~~~~~~s~~~l~~~l~  170 (211)
T 2gs9_A          141 ALYRRLGEKG-------VLP-WAQARFLAREDLKALLG  170 (211)
T ss_dssp             HHHHHHHHTT-------CTT-GGGCCCCCHHHHHHHHC
T ss_pred             HHHHHHhhcc-------Ccc-ccccccCCHHHHHHHhc
Confidence            2222222222       111 12245689999999999

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.30  E-value=1.3e-05  Score=72.22  Aligned_cols=89  Identities=15%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             CccccccCCC-CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           84 GSFYTRLFPH-NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        84 gSFy~~l~P~-~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      +.+..--++. +++|+|++..+||++..                    .+...+++.-++-|+|||++++.....+..  
T Consensus       140 ~D~~~l~~~~~~~FD~V~~~~~l~~l~~--------------------~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~--  197 (252)
T 2gb4_A          140 CSIFDLPRANIGKFDRIWDRGALVAINP--------------------GDHDRYADIILSLLRKEFQYLVAVLSYDPT--  197 (252)
T ss_dssp             SCTTTGGGGCCCCEEEEEESSSTTTSCG--------------------GGHHHHHHHHHHTEEEEEEEEEEEEECCTT--
T ss_pred             CccccCCcccCCCEEEEEEhhhhhhCCH--------------------HHHHHHHHHHHHHcCCCeEEEEEEEecCCc--
Confidence            4555433333 79999999999999632                    134567888889999999997554432210  


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                                               .. .-|.|..+++|+++.++. + |+|..++....
T Consensus       198 -------------------------~~-~g~~~~~~~~el~~~l~~-~-f~v~~~~~~~~  229 (252)
T 2gb4_A          198 -------------------------KH-AGPPFYVPSAELKRLFGT-K-CSMQCLEEVDA  229 (252)
T ss_dssp             -------------------------SC-CCSSCCCCHHHHHHHHTT-T-EEEEEEEEEEC
T ss_pred             -------------------------cC-CCCCCCCCHHHHHHHhhC-C-eEEEEEecccc
Confidence                                     01 223345789999999986 5 99999987653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.29  E-value=8.4e-06  Score=77.42  Aligned_cols=48  Identities=19%  Similarity=0.255  Sum_probs=40.2

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCC
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDN  159 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~  159 (300)
                      -+|++++|+|+|+.++||+.+                      ...+|+.-.+-|||||+|++.......
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d----------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~  208 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTN----------------------KLALFKEIHRVLRDGGELYFSDVYADR  208 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred             CCCCCCEEEEEEccchhcCCC----------------------HHHHHHHHHHHcCCCCEEEEEEecccc
Confidence            578999999999999999644                      467788888999999999998766543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.29  E-value=1.2e-05  Score=75.94  Aligned_cols=152  Identities=18%  Similarity=0.183  Sum_probs=92.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|+|+||++|..++.+..        .       .|.++++.-|+|.  .-...      ...... .+.. .+  +..
T Consensus       204 ~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~--~~~~a------~~~~~~-~~l~-~~--v~~  256 (369)
T 3gwz_A          204 ATAVDIGGGRGSLMAAVLD--------A-------FPGLRGTLLERPP--VAEEA------RELLTG-RGLA-DR--CEI  256 (369)
T ss_dssp             SEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH--HHHHH------HHHHHH-TTCT-TT--EEE
T ss_pred             cEEEEeCCCccHHHHHHHH--------H-------CCCCeEEEEcCHH--HHHHH------HHhhhh-cCcC-Cc--eEE
Confidence            4799999999986654332        1       1356778888742  11111      111111 1110 12  234


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.++|+ .-+|. ++|+++++.+||+.++                    .+...+|+.-++-|+|||++++.-...++..
T Consensus       257 ~~~d~~-~~~p~-~~D~v~~~~vlh~~~d--------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~  314 (369)
T 3gwz_A          257 LPGDFF-ETIPD-GADVYLIKHVLHDWDD--------------------DDVVRILRRIATAMKPDSRLLVIDNLIDERP  314 (369)
T ss_dssp             EECCTT-TCCCS-SCSEEEEESCGGGSCH--------------------HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSC
T ss_pred             eccCCC-CCCCC-CceEEEhhhhhccCCH--------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence            668888 45676 8999999999998443                    2235788888999999999998765544322


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      .   ..  ..+.++..-        .   ...-..+|.+|++++++++| |++.++..
T Consensus       315 ~---~~--~~~~d~~~~--------~---~~~g~~~t~~e~~~ll~~aG-f~~~~~~~  355 (369)
T 3gwz_A          315 A---AS--TLFVDLLLL--------V---LVGGAERSESEFAALLEKSG-LRVERSLP  355 (369)
T ss_dssp             C---HH--HHHHHHHHH--------H---HHSCCCBCHHHHHHHHHTTT-EEEEEEEE
T ss_pred             C---Cc--hhHhhHHHH--------h---hcCCccCCHHHHHHHHHHCC-CeEEEEEE
Confidence            1   11  222222110        0   01123478999999999999 99888754

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.29  E-value=5.8e-06  Score=75.29  Aligned_cols=97  Identities=12%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHH
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML  169 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~  169 (300)
                      .+|-+++|+++++.+|||+..-                    +...+|+.-++-|+|||+|++.....+.  +   +.+.
T Consensus       152 ~~d~~~~d~v~~~~vlh~~~d~--------------------~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~---~~~~  206 (274)
T 2qe6_A          152 MIDFSRPAAIMLVGMLHYLSPD--------------------VVDRVVGAYRDALAPGSYLFMTSLVDTG--L---PAQQ  206 (274)
T ss_dssp             HCCTTSCCEEEETTTGGGSCTT--------------------THHHHHHHHHHHSCTTCEEEEEEEBCSS--C---HHHH
T ss_pred             cCCCCCCEEEEEechhhhCCcH--------------------HHHHHHHHHHHhCCCCcEEEEEEecCcc--h---HHHH
Confidence            4666789999999999996651                    3567788888899999999999876532  1   2222


Q ss_pred             HHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec-ccC
Q 045960          170 MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS-WLV  226 (300)
Q Consensus       170 ~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~-~~~  226 (300)
                      . +.++          +... ..|+++++.+|+++++  .| |++........+ |.+
T Consensus       207 ~-~~~~----------~~~~-~~~~~~~s~~ei~~~l--~G-~~l~~~g~~~~~~w~p  249 (274)
T 2qe6_A          207 K-LARI----------TREN-LGEGWARTPEEIERQF--GD-FELVEPGVVYTALWRP  249 (274)
T ss_dssp             H-HHHH----------HHHH-HSCCCCBCHHHHHHTT--TT-CEECTTCSEEGGGSSC
T ss_pred             H-HHHH----------HHhc-CCCCccCCHHHHHHHh--CC-CeEccCcEeccccccC
Confidence            2 1221          1111 2477889999999999  46 887665444433 655

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.27  E-value=5.7e-06  Score=76.13  Aligned_cols=156  Identities=15%  Similarity=0.185  Sum_probs=92.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||++|..+..+.        +.       .|..+++.-|++  +.-...+.      ..... +.. .+  +..
T Consensus       167 ~~vlDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~--~~~~~a~~------~~~~~-~~~-~~--v~~  219 (335)
T 2r3s_A          167 LKVLDISASHGLFGIAVA--------QH-------NPNAEIFGVDWA--SVLEVAKE------NARIQ-GVA-SR--YHT  219 (335)
T ss_dssp             SEEEEETCTTCHHHHHHH--------HH-------CTTCEEEEEECH--HHHHHHHH------HHHHH-TCG-GG--EEE
T ss_pred             CEEEEECCCcCHHHHHHH--------HH-------CCCCeEEEEecH--HHHHHHHH------HHHhc-CCC-cc--eEE
Confidence            489999999997665433        21       134788888976  33333321      11110 100 11  223


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+++..--+|.+ +|+++++..+|..+.                    .+...+|+.-.+-|+|||++++.-...++..
T Consensus       220 ~~~d~~~~~~~~~-~D~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~  278 (335)
T 2r3s_A          220 IAGSAFEVDYGND-YDLVLLPNFLHHFDV--------------------ATCEQLLRKIKTALAVEGKVIVFDFIPNSDR  278 (335)
T ss_dssp             EESCTTTSCCCSC-EEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEECCCCTTS
T ss_pred             EecccccCCCCCC-CcEEEEcchhccCCH--------------------HHHHHHHHHHHHhCCCCcEEEEEeecCCCCc
Confidence            5567766445655 999999999997432                    3456788888899999999988765554321


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      ...   ....+.++...         .. .-....++.+|+++++++.| |++.++..
T Consensus       279 ~~~---~~~~~~~~~~~---------~~-~~~~~~~t~~~~~~ll~~aG-f~~~~~~~  322 (335)
T 2r3s_A          279 ITP---PDAAAFSLVML---------AT-TPNGDAYTFAEYESMFSNAG-FSHSQLHS  322 (335)
T ss_dssp             SCS---HHHHHHHHHHH---------HH-SSSCCCCCHHHHHHHHHHTT-CSEEEEEC
T ss_pred             CCc---hHHHHHHHHHH---------ee-CCCCCcCCHHHHHHHHHHCC-CCeeeEEE
Confidence            111   11111111100         01 11224569999999999999 88877643

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.26  E-value=2.3e-05  Score=72.29  Aligned_cols=151  Identities=19%  Similarity=0.187  Sum_probs=91.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhh-cChhhHHHHhhhcCCCCCceeeee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFK-SLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~-~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      +|.|+||++|..+..+..        .       .|..+++.-|+|.  .-...+ .+...  .+    .   .+  +..
T Consensus       170 ~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~--~~~~a~~~~~~~--~~----~---~~--v~~  221 (334)
T 2ip2_A          170 SFVDVGGGSGELTKAILQ--------A-------EPSARGVMLDREG--SLGVARDNLSSL--LA----G---ER--VSL  221 (334)
T ss_dssp             EEEEETCTTCHHHHHHHH--------H-------CTTCEEEEEECTT--CTHHHHHHTHHH--HH----T---TS--EEE
T ss_pred             EEEEeCCCchHHHHHHHH--------H-------CCCCEEEEeCcHH--HHHHHHHHHhhc--CC----C---Cc--EEE
Confidence            799999999976654432        1       1347889999842  222221 11110  00    0   12  233


Q ss_pred             cCCccccccCCCCcccEEEeccccc-cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALH-WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF  160 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alH-WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~  160 (300)
                      +.++|... +| +++|+++++..|| | +.                    .+...+|+.-++-|+|||++++.-...++.
T Consensus       222 ~~~d~~~~-~~-~~~D~v~~~~vl~~~-~~--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  278 (334)
T 2ip2_A          222 VGGDMLQE-VP-SNGDIYLLSRIIGDL-DE--------------------AASLRLLGNCREAMAGDGRVVVIERTISAS  278 (334)
T ss_dssp             EESCTTTC-CC-SSCSEEEEESCGGGC-CH--------------------HHHHHHHHHHHHHSCTTCEEEEEECCBCSS
T ss_pred             ecCCCCCC-CC-CCCCEEEEchhccCC-CH--------------------HHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence            56788874 66 6899999999998 6 21                    234677888889999999999886544432


Q ss_pred             CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          161 HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       161 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      .. .   ....+.++..-        ..+   .-..++.+|+++++++.| |++.++...
T Consensus       279 ~~-~---~~~~~~~~~~~--------~~~---~~~~~t~~e~~~ll~~aG-f~~~~~~~~  322 (334)
T 2ip2_A          279 EP-S---PMSVLWDVHLF--------MAC---AGRHRTTEEVVDLLGRGG-FAVERIVDL  322 (334)
T ss_dssp             SC-C---HHHHHHHHHHH--------HHH---SCCCCBHHHHHHHHHHTT-EEEEEEEEE
T ss_pred             CC-c---chhHHhhhHhH--------hhC---CCcCCCHHHHHHHHHHCC-CceeEEEEC
Confidence            21 1   11112221100        001   123468999999999999 998776543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.25  E-value=7.2e-06  Score=72.31  Aligned_cols=87  Identities=18%  Similarity=0.217  Sum_probs=63.7

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      +++|+|+++.+||++..   .               ..|...+|+.-++-|+|||++++......+   ..         
T Consensus       156 ~~fD~v~~~~~l~~~~~---~---------------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~---~~---------  205 (265)
T 2i62_A          156 PPADCLLSTLCLDAACP---D---------------LPAYRTALRNLGSLLKPGGFLVMVDALKSS---YY---------  205 (265)
T ss_dssp             CCEEEEEEESCHHHHCS---S---------------HHHHHHHHHHHHTTEEEEEEEEEEEESSCC---EE---------
T ss_pred             CCccEEEEhhhhhhhcC---C---------------hHHHHHHHHHHHhhCCCCcEEEEEecCCCc---eE---------
Confidence            89999999999997543   1               345778888889999999999988742211   00         


Q ss_pred             HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                         ..|        .. ..+.+..+.+++.+++++.| |++.+++.....
T Consensus       206 ---~~~--------~~-~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~  242 (265)
T 2i62_A          206 ---MIG--------EQ-KFSSLPLGWETVRDAVEEAG-YTIEQFEVISQN  242 (265)
T ss_dssp             ---EET--------TE-EEECCCCCHHHHHHHHHHTT-CEEEEEEEECCC
T ss_pred             ---EcC--------Cc-cccccccCHHHHHHHHHHCC-CEEEEEEEeccc
Confidence               011        11 23445678999999999999 999998887544

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.24  E-value=9.3e-06  Score=71.23  Aligned_cols=94  Identities=13%  Similarity=0.057  Sum_probs=59.3

Q ss_pred             cccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHH
Q 045960           95 FLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKD  174 (300)
Q Consensus        95 sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~  174 (300)
                      ++|+++++.++||+..                    .|...+|+.-.+-|+|||++++.-.+..+.     .    .+..
T Consensus       124 ~~d~v~~~~~~~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----~----~~~~  174 (245)
T 3ggd_A          124 GDANIYMRTGFHHIPV--------------------EKRELLGQSLRILLGKQGAMYLIELGTGCI-----D----FFNS  174 (245)
T ss_dssp             CSCEEEEESSSTTSCG--------------------GGHHHHHHHHHHHHTTTCEEEEEEECTTHH-----H----HHHH
T ss_pred             CccEEEEcchhhcCCH--------------------HHHHHHHHHHHHHcCCCCEEEEEeCCcccc-----H----HHHH
Confidence            4899999999999642                    246678888889999999988877655421     1    1222


Q ss_pred             HHHc-CCCchh---hhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          175 MISE-GLAEES---KVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       175 mv~e-G~i~~e---~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                      +... +-....   .+..- ..|. ..+.+|+.+.+  +| |++........
T Consensus       175 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~--aG-f~~~~~~~~~~  221 (245)
T 3ggd_A          175 LLEKYGQLPYELLLVMEHG-IRPG-IFTAEDIELYF--PD-FEILSQGEGLF  221 (245)
T ss_dssp             HHHHHSSCCHHHHHHHTTT-CCCC-CCCHHHHHHHC--TT-EEEEEEECCBC
T ss_pred             HHhCCCCCchhhhhccccC-CCCC-ccCHHHHHHHh--CC-CEEEecccccc
Confidence            2211 111111   11122 2343 46899999999  77 99877665543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.21  E-value=2.2e-06  Score=81.81  Aligned_cols=88  Identities=15%  Similarity=0.247  Sum_probs=65.5

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|+|+|+.+|||+.+                      ...+|+.-++-|+|||++++......           .
T Consensus       167 ~~~~~fD~I~~~~vl~h~~d----------------------~~~~l~~~~r~LkpgG~l~i~~~~~~-----------~  213 (416)
T 4e2x_A          167 RTEGPANVIYAANTLCHIPY----------------------VQSVLEGVDALLAPDGVFVFEDPYLG-----------D  213 (416)
T ss_dssp             HHHCCEEEEEEESCGGGCTT----------------------HHHHHHHHHHHEEEEEEEEEEEECHH-----------H
T ss_pred             cCCCCEEEEEECChHHhcCC----------------------HHHHHHHHHHHcCCCeEEEEEeCChH-----------H
Confidence            56789999999999999643                      67888889999999999999865332           1


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      .+    ..     ..++.+..-.+++++.++++.++++.| |++.+++.+.
T Consensus       214 ~~----~~-----~~~~~~~~~~~~~~s~~~l~~ll~~aG-f~~~~~~~~~  254 (416)
T 4e2x_A          214 IV----AK-----TSFDQIFDEHFFLFSATSVQGMAQRCG-FELVDVQRLP  254 (416)
T ss_dssp             HH----HH-----TCGGGCSTTCCEECCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred             hh----hh-----cchhhhhhhhhhcCCHHHHHHHHHHcC-CEEEEEEEcc
Confidence            11    11     112332023456789999999999999 9998888764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.18  E-value=3.4e-05  Score=65.59  Aligned_cols=89  Identities=19%  Similarity=0.240  Sum_probs=58.9

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|+++++.++|+++                    ..|...+|+.-++-|+|||++++......+.....+..+  
T Consensus        85 ~~~~~fD~v~~~~~l~~~~--------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~--  142 (209)
T 2p8j_A           85 FKDESMSFVYSYGTIFHMR--------------------KNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKI--  142 (209)
T ss_dssp             SCTTCEEEEEECSCGGGSC--------------------HHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEE--
T ss_pred             CCCCceeEEEEcChHHhCC--------------------HHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhh--
Confidence            6789999999999999853                    235678888889999999999999987654321100000  


Q ss_pred             HHHHHHHcCCCchhhhccccCCCc--ccCCHHHHHHHHHhcCC
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPI--YRASVDEVKQIVKKEGS  211 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~--y~~s~eE~~~~i~~~gs  211 (300)
                            .+....  ..+..  .|.  ++.+.+|++..+++.|.
T Consensus       143 ------~~~~~~--~~~~~--~~~~~~~~~~~e~~~~~~~~g~  175 (209)
T 2p8j_A          143 ------GEGEFL--QLERG--EKVIHSYVSLEEADKYFKDMKV  175 (209)
T ss_dssp             ------ETTEEE--ECC-C--CCEEEEEECHHHHHHTTTTSEE
T ss_pred             ------ccccce--eccCC--CceeEEecCHHHHHHHHhhcCc
Confidence                  000000  01111  233  57799999999998873

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.18  E-value=5.2e-06  Score=74.79  Aligned_cols=137  Identities=15%  Similarity=0.182  Sum_probs=83.2

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|.+++.+...            +     .+|+..|.-..=-       ......... .+     +-+..
T Consensus       122 ~~vLD~GcG~G~~~~~l~~~------------g-----~~v~~vD~s~~~~-------~~a~~~~~~-~~-----~~~~~  171 (286)
T 3m70_A          122 CKVLDLGCGQGRNSLYLSLL------------G-----YDVTSWDHNENSI-------AFLNETKEK-EN-----LNIST  171 (286)
T ss_dssp             CEEEEESCTTCHHHHHHHHT------------T-----CEEEEEESCHHHH-------HHHHHHHHH-TT-----CCEEE
T ss_pred             CcEEEECCCCCHHHHHHHHC------------C-----CeEEEEECCHHHH-------HHHHHHHHH-cC-----CceEE
Confidence            37999999999988765421            1     3566666421110       000111111 11     11222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+.+..-.+ ++++|+|+++.++||++.                    .++..+|+.-.+-|+|||++++.........
T Consensus       172 ~~~d~~~~~~-~~~fD~i~~~~~~~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~  230 (286)
T 3m70_A          172 ALYDINAANI-QENYDFIVSTVVFMFLNR--------------------ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDV  230 (286)
T ss_dssp             EECCGGGCCC-CSCEEEEEECSSGGGSCG--------------------GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSS
T ss_pred             EEeccccccc-cCCccEEEEccchhhCCH--------------------HHHHHHHHHHHHhcCCCcEEEEEEecCCCCC
Confidence            3345544333 889999999999999743                    2456788888899999999888665333211


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      +                         .- ..+.+..+.+|++..++.   |++...+
T Consensus       231 ~-------------------------~~-~~~~~~~~~~~l~~~~~~---~~~~~~~  258 (286)
T 3m70_A          231 P-------------------------CP-LPFSFTFAENELKEYYKD---WEFLEYN  258 (286)
T ss_dssp             C-------------------------CS-SCCSCCBCTTHHHHHTTT---SEEEEEE
T ss_pred             C-------------------------CC-CCccccCCHHHHHHHhcC---CEEEEEE
Confidence            1                         01 233467788999998864   8887765

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.17  E-value=1.2e-05  Score=75.29  Aligned_cols=155  Identities=20%  Similarity=0.199  Sum_probs=89.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+..        .       .|..+++.-|+|  +.-...+      ...... +.. .+  +..
T Consensus       184 ~~vlDvG~G~G~~~~~l~~--------~-------~~~~~~~~~D~~--~~~~~a~------~~~~~~-~~~-~~--v~~  236 (374)
T 1qzz_A          184 RHVLDVGGGNGGMLAAIAL--------R-------APHLRGTLVELA--GPAERAR------RRFADA-GLA-DR--VTV  236 (374)
T ss_dssp             CEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECH--HHHHHHH------HHHHHT-TCT-TT--EEE
T ss_pred             CEEEEECCCcCHHHHHHHH--------H-------CCCCEEEEEeCH--HHHHHHH------HHHHhc-CCC-Cc--eEE
Confidence            4799999999966654432        1       135788888873  2221111      111111 110 12  233


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe--ecCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL--YNDN  159 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~--g~~~  159 (300)
                      +.+++.. -+|.+ +|+++++..||+.+.                    .+...+|+.-.+-|+|||++++.-.  ..++
T Consensus       237 ~~~d~~~-~~~~~-~D~v~~~~vl~~~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~  294 (374)
T 1qzz_A          237 AEGDFFK-PLPVT-ADVVLLSFVLLNWSD--------------------EDALTILRGCVRALEPGGRLLVLDRADVEGD  294 (374)
T ss_dssp             EECCTTS-CCSCC-EEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEECCH----
T ss_pred             EeCCCCC-cCCCC-CCEEEEeccccCCCH--------------------HHHHHHHHHHHHhcCCCcEEEEEechhhcCC
Confidence            5577776 35654 999999999997433                    2235778888899999999988765  3322


Q ss_pred             CCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          160 FHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       160 ~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      ...   ... ..+.++...        ...   ....++.+|+++++++.| |++.++....
T Consensus       295 ~~~---~~~-~~~~~~~~~--------~~~---~~~~~~~~~~~~ll~~aG-f~~~~~~~~~  340 (374)
T 1qzz_A          295 GAD---RFF-STLLDLRML--------TFM---GGRVRTRDEVVDLAGSAG-LALASERTSG  340 (374)
T ss_dssp             ------HHH-HHHHHHHHH--------HHH---SCCCCCHHHHHHHHHTTT-EEEEEEEEEC
T ss_pred             CCC---cch-hhhcchHHH--------HhC---CCcCCCHHHHHHHHHHCC-CceEEEEECC
Confidence            110   111 111221100        001   124579999999999999 9988877654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.17  E-value=4.1e-06  Score=72.27  Aligned_cols=152  Identities=13%  Similarity=0.037  Sum_probs=82.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCC---CCcee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHE---FGSCF   78 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~---~~~~f   78 (300)
                      -+|.|+||++|..+..+..        .       .+..+|+.-|.-..--...-+.+.       . .+..   ..++-
T Consensus        31 ~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~-------~-~~~~~~~~~~v~   87 (217)
T 3jwh_A           31 RRVIDLGCGQGNLLKILLK--------D-------SFFEQITGVDVSYRSLEIAQERLD-------R-LRLPRNQWERLQ   87 (217)
T ss_dssp             CEEEEETCTTCHHHHHHHH--------C-------TTCSEEEEEESCHHHHHHHHHHHT-------T-CCCCHHHHTTEE
T ss_pred             CEEEEeCCCCCHHHHHHHh--------h-------CCCCEEEEEECCHHHHHHHHHHHH-------H-hcCCcccCcceE
Confidence            3799999999998775432        1       123567777753221111111110       0 0000   00121


Q ss_pred             eeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           79 VAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        79 ~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                        .+-++....-++.+++|+|+++.++||+..                    .++..+|+.-++-|+|||+++++....-
T Consensus        88 --~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~li~~~~~~~  145 (217)
T 3jwh_A           88 --LIQGALTYQDKRFHGYDAATVIEVIEHLDL--------------------SRLGAFERVLFEFAQPKIVIVTTPNIEY  145 (217)
T ss_dssp             --EEECCTTSCCGGGCSCSEEEEESCGGGCCH--------------------HHHHHHHHHHHTTTCCSEEEEEEEBHHH
T ss_pred             --EEeCCcccccccCCCcCEEeeHHHHHcCCH--------------------HHHHHHHHHHHHHcCCCEEEEEccCccc
Confidence              122333333456689999999999999632                    3467888888999999996665543111


Q ss_pred             CCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHH----HHHHhcCCeeEEEE
Q 045960          159 NFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVK----QIVKKEGSFDIQEV  217 (300)
Q Consensus       159 ~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~----~~i~~~gsF~I~~~  217 (300)
                                ...+..+.. +.      ... .-..+..+.+|++    .++++.| |+++..
T Consensus       146 ----------~~~~~~~~~-~~------~~~-~~~~~~~~~~~l~~~~~~~~~~~G-f~v~~~  189 (217)
T 3jwh_A          146 ----------NVKFANLPA-GK------LRH-KDHRFEWTRSQFQNWANKITERFA-YNVQFQ  189 (217)
T ss_dssp             ----------HHHTC-------------------CCSCBCHHHHHHHHHHHHHHSS-EEEEEC
T ss_pred             ----------chhhccccc-cc------ccc-cccccccCHHHHHHHHHHHHHHcC-ceEEEE
Confidence                      111111111 10      011 1233457999999    7777888 877543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.17  E-value=2.3e-05  Score=65.35  Aligned_cols=71  Identities=11%  Similarity=0.088  Sum_probs=53.1

Q ss_pred             CCCCcccEEEeccccccc-cCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHH
Q 045960           91 FPHNFLDFVYSSYALHWL-SRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML  169 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWL-S~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~  169 (300)
                      +|++++|+|+|+.++||+ .+                      ...+|+.-++-|||||++++.-.....          
T Consensus        59 ~~~~~fD~V~~~~~l~~~~~~----------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~----------  106 (176)
T 2ld4_A           59 HKESSFDIILSGLVPGSTTLH----------------------SAEILAEIARILRPGGCLFLKEPVETA----------  106 (176)
T ss_dssp             CCSSCEEEEEECCSTTCCCCC----------------------CHHHHHHHHHHEEEEEEEEEEEEEESS----------
T ss_pred             CCCCCEeEEEECChhhhcccC----------------------HHHHHHHHHHHCCCCEEEEEEcccccc----------
Confidence            478899999999999996 32                      356777888999999999995321110          


Q ss_pred             HHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEE
Q 045960          170 MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQ  215 (300)
Q Consensus       170 ~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~  215 (300)
                                         . .-+.|.++.+|+...+++.| | |+
T Consensus       107 -------------------~-~~~~~~~~~~~~~~~l~~aG-f-i~  130 (176)
T 2ld4_A          107 -------------------V-DNNSKVKTASKLCSALTLSG-L-VE  130 (176)
T ss_dssp             -------------------S-CSSSSSCCHHHHHHHHHHTT-C-EE
T ss_pred             -------------------c-ccccccCCHHHHHHHHHHCC-C-cE
Confidence                               0 11456678899999999998 7 66

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.15  E-value=1.5e-05  Score=74.66  Aligned_cols=157  Identities=16%  Similarity=0.126  Sum_probs=94.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+...               .|..+++.-|+|  ..-...+      ...... +.. .+  +..
T Consensus       192 ~~vLDvG~G~G~~~~~l~~~---------------~p~~~~~~~D~~--~~~~~a~------~~~~~~-~~~-~~--v~~  244 (359)
T 1x19_A          192 KKMIDVGGGIGDISAAMLKH---------------FPELDSTILNLP--GAIDLVN------ENAAEK-GVA-DR--MRG  244 (359)
T ss_dssp             CEEEEESCTTCHHHHHHHHH---------------CTTCEEEEEECG--GGHHHHH------HHHHHT-TCT-TT--EEE
T ss_pred             CEEEEECCcccHHHHHHHHH---------------CCCCeEEEEecH--HHHHHHH------HHHHhc-CCC-CC--EEE
Confidence            37999999999977654431               135778888873  2222221      111111 110 11  233


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.++|..--+|+.  |+++++..||.++.                    .+...+|+.-++-|+|||++++.-...++..
T Consensus       245 ~~~d~~~~~~~~~--D~v~~~~vlh~~~d--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~  302 (359)
T 1x19_A          245 IAVDIYKESYPEA--DAVLFCRILYSANE--------------------QLSTIMCKKAFDAMRSGGRLLILDMVIDDPE  302 (359)
T ss_dssp             EECCTTTSCCCCC--SEEEEESCGGGSCH--------------------HHHHHHHHHHHTTCCTTCEEEEEEECCCCTT
T ss_pred             EeCccccCCCCCC--CEEEEechhccCCH--------------------HHHHHHHHHHHHhcCCCCEEEEEecccCCCC
Confidence            5678877656665  99999999985222                    3467788888999999999977655444321


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      . .  .....+ .|...       ...- .....+++.+|+++++++.| |++.++...
T Consensus       303 ~-~--~~~~~~-~~~~~-------~~~g-~~~~~~~t~~e~~~ll~~aG-f~~v~~~~~  348 (359)
T 1x19_A          303 N-P--NFDYLS-HYILG-------AGMP-FSVLGFKEQARYKEILESLG-YKDVTMVRK  348 (359)
T ss_dssp             S-C--CHHHHH-HHGGG-------GGSS-CCCCCCCCGGGHHHHHHHHT-CEEEEEEEE
T ss_pred             C-c--hHHHHH-HHHHh-------cCCC-CcccCCCCHHHHHHHHHHCC-CceEEEEec
Confidence            1 1  122222 33211       0101 12234589999999999999 988776654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.15  E-value=2.6e-05  Score=67.60  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=36.8

Q ss_pred             CCcccEEEe-ccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           93 HNFLDFVYS-SYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        93 ~~sv~~~~S-s~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      ++++|+++| ..++||+..                   ..|...+|+.-++-|+|||++++.....
T Consensus        98 ~~~~D~v~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A           98 GRKFSAVVSMFSSVGYLKT-------------------TEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             SSCEEEEEECTTGGGGCCS-------------------HHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             CCCCcEEEEcCchHhhcCC-------------------HHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            678999995 559999654                   3467888999999999999999975443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.13  E-value=7.5e-06  Score=75.37  Aligned_cols=91  Identities=14%  Similarity=0.217  Sum_probs=61.5

Q ss_pred             EEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHH
Q 045960           98 FVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMIS  177 (300)
Q Consensus        98 ~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~  177 (300)
                      .++|+++||||..                   ..|....|+.-.+-|+|||+|++.....+.. +   +.+..+...+  
T Consensus       163 av~~~avLH~l~d-------------------~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~-p---~~~~~~~~~~--  217 (277)
T 3giw_A          163 ALTVIAIVHFVLD-------------------EDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA-P---QEVGRVAREY--  217 (277)
T ss_dssp             EEEEESCGGGSCG-------------------GGCHHHHHHHHHTTSCTTCEEEEEEECCTTS-H---HHHHHHHHHH--
T ss_pred             hHHhhhhHhcCCc-------------------hhhHHHHHHHHHHhCCCCcEEEEEeccCCCC-H---HHHHHHHHHH--
Confidence            5889999999655                   2224566777788999999999998776421 1   2222222222  


Q ss_pred             cCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec-ccC
Q 045960          178 EGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS-WLV  226 (300)
Q Consensus       178 eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~-~~~  226 (300)
                               ..- ..|+.++|.+|+...+.  | |++..-.+...+ |.+
T Consensus       218 ---------~~~-g~p~~~rs~~ei~~~f~--G-lelvePG~v~~~~Wrp  254 (277)
T 3giw_A          218 ---------AAR-NMPMRLRTHAEAEEFFE--G-LELVEPGIVQVHKWHP  254 (277)
T ss_dssp             ---------HHT-TCCCCCCCHHHHHHTTT--T-SEECTTCSEEGGGSSC
T ss_pred             ---------Hhc-CCCCccCCHHHHHHHhC--C-CcccCCcEeecccccC
Confidence                     222 46889999999999995  6 887665444444 766

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.12  E-value=2.9e-05  Score=72.34  Aligned_cols=156  Identities=15%  Similarity=0.166  Sum_probs=92.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+..        .       .|.++++.-|+|  +.-...+      ..... .+.. .+  +.-
T Consensus       185 ~~vLDvG~G~G~~~~~l~~--------~-------~~~~~~~~~D~~--~~~~~a~------~~~~~-~~~~-~~--v~~  237 (360)
T 1tw3_A          185 RHVLDVGGGKGGFAAAIAR--------R-------APHVSATVLEMA--GTVDTAR------SYLKD-EGLS-DR--VDV  237 (360)
T ss_dssp             SEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECT--THHHHHH------HHHHH-TTCT-TT--EEE
T ss_pred             cEEEEeCCcCcHHHHHHHH--------h-------CCCCEEEEecCH--HHHHHHH------HHHHh-cCCC-Cc--eEE
Confidence            3799999999987765542        1       135788888873  2222221      11111 1110 12  223


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee-cCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY-NDNF  160 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g-~~~~  160 (300)
                      +.+++.. -+|.+ +|+++++..||.++.                    .+...+|+.-.+-|+|||++++.-.. .++.
T Consensus       238 ~~~d~~~-~~~~~-~D~v~~~~vl~~~~~--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~  295 (360)
T 1tw3_A          238 VEGDFFE-PLPRK-ADAIILSFVLLNWPD--------------------HDAVRILTRCAEALEPGGRILIHERDDLHEN  295 (360)
T ss_dssp             EECCTTS-CCSSC-EEEEEEESCGGGSCH--------------------HHHHHHHHHHHHTEEEEEEEEEEECCBCGGG
T ss_pred             EeCCCCC-CCCCC-ccEEEEcccccCCCH--------------------HHHHHHHHHHHHhcCCCcEEEEEEEeccCCC
Confidence            5567775 35654 999999999986332                    23457788888899999999987654 3222


Q ss_pred             CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          161 HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       161 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                      .. .  ... .+.++...        ... .  ...++.+|+++++++.| |++.++.....
T Consensus       296 ~~-~--~~~-~~~~~~~~--------~~~-~--~~~~t~~e~~~ll~~aG-f~~~~~~~~~~  341 (360)
T 1tw3_A          296 SF-N--EQF-TELDLRML--------VFL-G--GALRTREKWDGLAASAG-LVVEEVRQLPS  341 (360)
T ss_dssp             CC-S--HHH-HHHHHHHH--------HHH-S--CCCCBHHHHHHHHHHTT-EEEEEEEEEEC
T ss_pred             CC-c--chh-hhccHHHh--------hhc-C--CcCCCHHHHHHHHHHCC-CeEEEEEeCCC
Confidence            11 1  111 11111100        001 1  23479999999999999 99888776643

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.12  E-value=1.6e-05  Score=74.99  Aligned_cols=150  Identities=18%  Similarity=0.182  Sum_probs=90.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+..        .       .|.++++.-|+|  ..-...+.               .++  +..
T Consensus       211 ~~vLDvG~G~G~~~~~l~~--------~-------~~~~~~~~~D~~--~~~~~a~~---------------~~~--v~~  256 (372)
T 1fp1_D          211 STLVDVGGGSGRNLELIIS--------K-------YPLIKGINFDLP--QVIENAPP---------------LSG--IEH  256 (372)
T ss_dssp             SEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECH--HHHTTCCC---------------CTT--EEE
T ss_pred             CEEEEeCCCCcHHHHHHHH--------H-------CCCCeEEEeChH--HHHHhhhh---------------cCC--CEE
Confidence            3799999999988765432        1       135777777864  11111111               122  344


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.|+|+. -+|.  +|+++++.+||+++.                    .+...+|+.-++-|+|||++++.-...++..
T Consensus       257 ~~~d~~~-~~~~--~D~v~~~~~lh~~~d--------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~  313 (372)
T 1fp1_D          257 VGGDMFA-SVPQ--GDAMILKAVCHNWSD--------------------EKCIEFLSNCHKALSPNGKVIIVEFILPEEP  313 (372)
T ss_dssp             EECCTTT-CCCC--EEEEEEESSGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEEEECSSC
T ss_pred             EeCCccc-CCCC--CCEEEEecccccCCH--------------------HHHHHHHHHHHHhcCCCCEEEEEEeccCCCC
Confidence            6678887 4675  899999999998443                    2245788888999999999998854444322


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ..........+.++..-.        .. .  -..++.+|+++++++.| |++.++...
T Consensus       314 ~~~~~~~~~~~~d~~~~~--------~~-~--~~~~t~~e~~~ll~~aG-f~~~~~~~~  360 (372)
T 1fp1_D          314 NTSEESKLVSTLDNLMFI--------TV-G--GRERTEKQYEKLSKLSG-FSKFQVACR  360 (372)
T ss_dssp             CSSHHHHHHHHHHHHHHH--------HH-S--CCCEEHHHHHHHHHHTT-CSEEEEEEE
T ss_pred             ccchHHHHHHHhhHHHHh--------cc-C--CccCCHHHHHHHHHHCC-CceEEEEEc
Confidence            111000011222221000        00 0  12358999999999999 888776553

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.10  E-value=8e-06  Score=70.22  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|+++++.++|| ..                      ...+|+.-++-|+|||++++.-...             
T Consensus       111 ~~~~~fD~v~~~~~l~~-~~----------------------~~~~l~~~~~~L~~gG~l~i~~~~~-------------  154 (215)
T 2zfu_A          111 LEDESVDVAVFCLSLMG-TN----------------------IRDFLEEANRVLKPGGLLKVAEVSS-------------  154 (215)
T ss_dssp             CCTTCEEEEEEESCCCS-SC----------------------HHHHHHHHHHHEEEEEEEEEEECGG-------------
T ss_pred             CCCCCEeEEEEehhccc-cC----------------------HHHHHHHHHHhCCCCeEEEEEEcCC-------------
Confidence            67889999999999997 22                      4667777788999999999874211             


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                                       .       +++.+++.+++++.| |++.+...
T Consensus       155 -----------------~-------~~~~~~~~~~l~~~G-f~~~~~~~  178 (215)
T 2zfu_A          155 -----------------R-------FEDVRTFLRAVTKLG-FKIVSKDL  178 (215)
T ss_dssp             -----------------G-------CSCHHHHHHHHHHTT-EEEEEEEC
T ss_pred             -----------------C-------CCCHHHHHHHHHHCC-CEEEEEec
Confidence                             1       128899999999998 88877553

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.09  E-value=2.5e-05  Score=72.90  Aligned_cols=148  Identities=20%  Similarity=0.293  Sum_probs=90.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+.        +.       .|..+++.-|+|.     .......            .++  +..
T Consensus       190 ~~vlDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~~------------~~~--v~~  235 (352)
T 1fp2_A          190 ESIVDVGGGTGTTAKIIC--------ET-------FPKLKCIVFDRPQ-----VVENLSG------------SNN--LTY  235 (352)
T ss_dssp             SEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-----HHTTCCC------------BTT--EEE
T ss_pred             ceEEEeCCCccHHHHHHH--------HH-------CCCCeEEEeeCHH-----HHhhccc------------CCC--cEE
Confidence            379999999997665433        22       1346788888741     1111111            122  444


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhcc---CceeEEEEeecC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKS---QGRMVLTLLYND  158 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~---GG~~vl~~~g~~  158 (300)
                      +.|.|+. -+|.  +|+++++.+||.++.                    .+...+|+.-++-|+|   ||++++.-...+
T Consensus       236 ~~~d~~~-~~p~--~D~v~~~~~lh~~~d--------------------~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          236 VGGDMFT-SIPN--ADAVLLKYILHNWTD--------------------KDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             EECCTTT-CCCC--CSEEEEESCGGGSCH--------------------HHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             EeccccC-CCCC--ccEEEeehhhccCCH--------------------HHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            6688887 4564  999999999996332                    2245778888899999   999988865554


Q ss_pred             CCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          159 NFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       159 ~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      +......-.-...+.++..        +. + +  -..++.+|+++++++.| |++.++..
T Consensus       293 ~~~~~~~~~~~~~~~d~~~--------~~-~-~--g~~~t~~e~~~ll~~aG-f~~~~~~~  340 (352)
T 1fp2_A          293 KKKDENQVTQIKLLMDVNM--------AC-L-N--GKERNEEEWKKLFIEAG-FQHYKISP  340 (352)
T ss_dssp             TTTSCHHHHHHHHHHHHHG--------GG-G-T--CCCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred             CCCCccchhhhHhhccHHH--------Hh-c-c--CCCCCHHHHHHHHHHCC-CCeeEEEe
Confidence            3221100001112222210        00 2 2  33468999999999999 88777654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.09  E-value=1.7e-05  Score=68.28  Aligned_cols=158  Identities=18%  Similarity=0.085  Sum_probs=84.7

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+..               ..+..+|+.-|.-..--...-+.+...  .+.....   .++-  .
T Consensus        31 ~~vLDiGcG~G~~~~~l~~---------------~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~---~~v~--~   88 (219)
T 3jwg_A           31 KKVIDLGCGEGNLLSLLLK---------------DKSFEQITGVDVSYSVLERAKDRLKID--RLPEMQR---KRIS--L   88 (219)
T ss_dssp             CEEEEETCTTCHHHHHHHT---------------STTCCEEEEEESCHHHHHHHHHHHTGG--GSCHHHH---TTEE--E
T ss_pred             CEEEEecCCCCHHHHHHHh---------------cCCCCEEEEEECCHHHHHHHHHHHHhh--ccccccC---cceE--E
Confidence            3799999999987765432               113367777775322111111111100  0000000   0111  1


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +-++....-++.+++|+|+++.++||+..                    .++..+|+.-++-|+|||.++.+....-+. 
T Consensus        89 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--------------------~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~-  147 (219)
T 3jwg_A           89 FQSSLVYRDKRFSGYDAATVIEVIEHLDE--------------------NRLQAFEKVLFEFTRPQTVIVSTPNKEYNF-  147 (219)
T ss_dssp             EECCSSSCCGGGTTCSEEEEESCGGGCCH--------------------HHHHHHHHHHHTTTCCSEEEEEEEBGGGGG-
T ss_pred             EeCcccccccccCCCCEEEEHHHHHhCCH--------------------HHHHHHHHHHHHhhCCCEEEEEccchhhhh-
Confidence            22344444456789999999999999633                    246788888999999999665544322111 


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHH----HHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVK----QIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~----~~i~~~gsF~I~~~e~~  220 (300)
                      ...         .+ ..+.      ... .-..+..+.+|++    .++++.| |+++....-
T Consensus       148 ~~~---------~~-~~~~------~~~-~~~~~~~~~~~l~~~~~~l~~~~G-f~v~~~~~g  192 (219)
T 3jwg_A          148 HYG---------NL-FEGN------LRH-RDHRFEWTRKEFQTWAVKVAEKYG-YSVRFLQIG  192 (219)
T ss_dssp             CCC---------CT------------GG-GCCTTSBCHHHHHHHHHHHHHHHT-EEEEEEEES
T ss_pred             hhc---------cc-Cccc------ccc-cCceeeecHHHHHHHHHHHHHHCC-cEEEEEecC
Confidence            000         00 0000      011 1223456899999    6677788 887665433

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.09  E-value=1.4e-05  Score=74.93  Aligned_cols=149  Identities=19%  Similarity=0.231  Sum_probs=90.1

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+..        .       .|.++++.-|+|  ..   ......            .++  +..
T Consensus       195 ~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~--~~---~~~a~~------------~~~--v~~  240 (358)
T 1zg3_A          195 ESLVDVGGGTGGVTKLIHE--------I-------FPHLKCTVFDQP--QV---VGNLTG------------NEN--LNF  240 (358)
T ss_dssp             SEEEEETCTTSHHHHHHHH--------H-------CTTSEEEEEECH--HH---HSSCCC------------CSS--EEE
T ss_pred             CEEEEECCCcCHHHHHHHH--------H-------CCCCeEEEeccH--HH---Hhhccc------------CCC--cEE
Confidence            3799999999987765432        1       134667777874  21   111111            123  444


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhcc---CceeEEEEeecC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKS---QGRMVLTLLYND  158 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~---GG~~vl~~~g~~  158 (300)
                      +.|+|+. -+|  ++|+++++..||+++.                    .+...+|+.-.+-|+|   ||++++.-...+
T Consensus       241 ~~~d~~~-~~~--~~D~v~~~~vlh~~~d--------------------~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  297 (358)
T 1zg3_A          241 VGGDMFK-SIP--SADAVLLKWVLHDWND--------------------EQSLKILKNSKEAISHKGKDGKVIIIDISID  297 (358)
T ss_dssp             EECCTTT-CCC--CCSEEEEESCGGGSCH--------------------HHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred             EeCccCC-CCC--CceEEEEcccccCCCH--------------------HHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence            6788887 456  4999999999998433                    2345788888899999   999988754443


Q ss_pred             CCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          159 NFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       159 ~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      +......-.....+.++..-        ... +  -..++.+|+++++++.| |++.++..
T Consensus       298 ~~~~~~~~~~~~~~~d~~~~--------~~~-~--g~~~t~~e~~~ll~~aG-f~~~~~~~  346 (358)
T 1zg3_A          298 ETSDDRGLTELQLDYDLVML--------TMF-L--GKERTKQEWEKLIYDAG-FSSYKITP  346 (358)
T ss_dssp             TTCSCHHHHHHHHHHHHHHH--------HHH-S--CCCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred             CCCccchhhhHHHhhCHHHh--------ccC-C--CCCCCHHHHHHHHHHcC-CCeeEEEe
Confidence            32211000011122222100        001 1  12469999999999999 88877654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.08  E-value=1.5e-05  Score=68.43  Aligned_cols=47  Identities=15%  Similarity=0.238  Sum_probs=39.2

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      |++++|+|+++.++||+..                   ..++..+|+.-++-|+|||++++.....
T Consensus       111 ~~~~fD~v~~~~~l~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          111 TAELFDLIVVAEVLYYLED-------------------MTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CSCCEEEEEEESCGGGSSS-------------------HHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCCCccEEEEccHHHhCCC-------------------HHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            7899999999999999665                   2346678888899999999999877533

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.07  E-value=3.3e-05  Score=64.31  Aligned_cols=77  Identities=13%  Similarity=0.223  Sum_probs=56.3

Q ss_pred             CccccccCCCCcccEEEec-cccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSS-YALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss-~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      +.+..--+|++++|+++++ ..+|+++.                    .+...+|+.-.+-|+|||++++......    
T Consensus        96 ~d~~~~~~~~~~~D~i~~~~~~~~~~~~--------------------~~~~~~l~~~~~~l~~~G~l~~~~~~~~----  151 (195)
T 3cgg_A           96 GDLSVDQISETDFDLIVSAGNVMGFLAE--------------------DGREPALANIHRALGADGRAVIGFGAGR----  151 (195)
T ss_dssp             CCTTTSCCCCCCEEEEEECCCCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEETTS----
T ss_pred             cccccCCCCCCceeEEEECCcHHhhcCh--------------------HHHHHHHHHHHHHhCCCCEEEEEeCCCC----
Confidence            3444334678899999998 78888532                    3467788888899999999998764221    


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                                                       ..+.+++...+++.| |++.++.
T Consensus       152 ---------------------------------~~~~~~~~~~l~~~G-f~~~~~~  173 (195)
T 3cgg_A          152 ---------------------------------GWVFGDFLEVAERVG-LELENAF  173 (195)
T ss_dssp             ---------------------------------SCCHHHHHHHHHHHT-EEEEEEE
T ss_pred             ---------------------------------CcCHHHHHHHHHHcC-CEEeeee
Confidence                                             035778888898888 8876654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.07  E-value=1.7e-05  Score=68.31  Aligned_cols=54  Identities=15%  Similarity=0.205  Sum_probs=40.0

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      +.+..--+|++++|+++++.++|+..                    ..|...+|+.-++-|+|||++++.....
T Consensus        92 ~d~~~~~~~~~~~D~v~~~~~~~~~~--------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~  145 (227)
T 1ve3_A           92 GDARKLSFEDKTFDYVIFIDSIVHFE--------------------PLELNQVFKEVRRVLKPSGKFIMYFTDL  145 (227)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCGGGCC--------------------HHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CchhcCCCCCCcEEEEEEcCchHhCC--------------------HHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence            44444346788999999999955421                    2346778888889999999999987653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.06  E-value=3.2e-06  Score=77.22  Aligned_cols=92  Identities=14%  Similarity=0.140  Sum_probs=58.0

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      ++.+++|+|+|..++||+.-                ..-..+...+|+.-++-|+|||+|++....              
T Consensus       173 ~~~~~fD~I~~~~vl~~ihl----------------~~~~~~~~~~l~~~~~~LkpGG~lil~~~~--------------  222 (292)
T 3g07_A          173 AQTPEYDVVLCLSLTKWVHL----------------NWGDEGLKRMFRRIYRHLRPGGILVLEPQP--------------  222 (292)
T ss_dssp             TCCCCEEEEEEESCHHHHHH----------------HHHHHHHHHHHHHHHHHEEEEEEEEEECCC--------------
T ss_pred             ccCCCcCEEEEChHHHHhhh----------------cCCHHHHHHHHHHHHHHhCCCcEEEEecCC--------------
Confidence            57899999999999999520                011346788999999999999999986321              


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHh--cCCeeEEEE
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKK--EGSFDIQEV  217 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~--~gsF~I~~~  217 (300)
                       |........++++-...+ .  .....++++..++.+  .| |+..++
T Consensus       223 -~~~y~~~~~~~~~~~~~~-~--~~~~~p~~~~~~L~~~~~G-F~~~~~  266 (292)
T 3g07_A          223 -WSSYGKRKTLTETIYKNY-Y--RIQLKPEQFSSYLTSPDVG-FSSYEL  266 (292)
T ss_dssp             -HHHHHTTTTSCHHHHHHH-H--HCCCCGGGHHHHHTSTTTC-CCEEEE
T ss_pred             -chhhhhhhcccHHHHhhh-h--cEEEcHHHHHHHHHhcCCC-ceEEEE
Confidence             111111222233222222 1  111236899999998  77 865443

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.92  E-value=3.8e-05  Score=66.27  Aligned_cols=166  Identities=14%  Similarity=0.156  Sum_probs=89.7

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCce-eeee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSC-FVAA   81 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~-f~~~   81 (300)
                      +|+|+||++|..++.+...               .|..+|+.-|.-..=-...       ...... .+.  .++ |+.+
T Consensus        44 ~vLDiGcG~G~~~~~la~~---------------~p~~~v~gvD~s~~~l~~a-------~~~~~~-~~~--~~v~~~~~   98 (214)
T 1yzh_A           44 IHVEVGSGKGAFVSGMAKQ---------------NPDINYIGIDIQKSVLSYA-------LDKVLE-VGV--PNIKLLWV   98 (214)
T ss_dssp             EEEEESCTTSHHHHHHHHH---------------CTTSEEEEEESCHHHHHHH-------HHHHHH-HCC--SSEEEEEC
T ss_pred             eEEEEccCcCHHHHHHHHH---------------CCCCCEEEEEcCHHHHHHH-------HHHHHH-cCC--CCEEEEeC
Confidence            6999999999888755321               1346777777421111100       111111 111  232 2222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      =... ..+.+|++++|+++++...+|...--       +..       .-+...+|+.-++-|+|||++++.....    
T Consensus        99 d~~~-~~~~~~~~~~D~i~~~~~~~~~~~~~-------~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~~----  159 (214)
T 1yzh_A           99 DGSD-LTDYFEDGEIDRLYLNFSDPWPKKRH-------EKR-------RLTYKTFLDTFKRILPENGEIHFKTDNR----  159 (214)
T ss_dssp             CSSC-GGGTSCTTCCSEEEEESCCCCCSGGG-------GGG-------STTSHHHHHHHHHHSCTTCEEEEEESCH----
T ss_pred             CHHH-HHhhcCCCCCCEEEEECCCCccccch-------hhh-------ccCCHHHHHHHHHHcCCCcEEEEEeCCH----
Confidence            1111 33457899999999998888854200       000       0024567887888899999998865211    


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhh-ccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKV-KSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~-d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                          +....++..|.+.|.-..+.. |-+ .-+.......++++...+.| +.|-++.
T Consensus       160 ----~~~~~~~~~~~~~g~~~~~~~~d~~-~~~~~~~~~t~~e~~~~~~g-~~i~~~~  211 (214)
T 1yzh_A          160 ----GLFEYSLVSFSQYGMKLNGVWLDLH-ASDFEGNVMTEYEQKFSNKG-QVIYRVE  211 (214)
T ss_dssp             ----HHHHHHHHHHHHHTCEEEEEESSGG-GSCCCCCCCCHHHHHTGGGC-CCCEEEE
T ss_pred             ----HHHHHHHHHHHHCCCeeeecccccc-ccCCCCCCCcHHHHHHHHCC-CCeEEEE
Confidence                234455555656674222211 223 23333334457778888887 6665544

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=97.90  E-value=6.4e-05  Score=67.89  Aligned_cols=158  Identities=13%  Similarity=-0.005  Sum_probs=85.6

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||++|..++.+..        .      -++..+|+..|+-..=-. ..      .... ...+   .+  +..
T Consensus        24 ~~vLDiGcG~G~~~~~l~~--------~------~~~~~~v~gvD~s~~~~~-~a------~~~~-~~~~---~~--v~~   76 (284)
T 3gu3_A           24 VHIVDYGCGYGYLGLVLMP--------L------LPEGSKYTGIDSGETLLA-EA------RELF-RLLP---YD--SEF   76 (284)
T ss_dssp             CEEEEETCTTTHHHHHHTT--------T------SCTTCEEEEEESCHHHHH-HH------HHHH-HSSS---SE--EEE
T ss_pred             CeEEEecCCCCHHHHHHHH--------h------CCCCCEEEEEECCHHHHH-HH------HHHH-HhcC---Cc--eEE
Confidence            4799999999987764421        1      111367788775211000 00      0000 0001   11  222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec----
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN----  157 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~----  157 (300)
                      +-+.+..--+ ++++|+|+++.++|++..                      +..+|+.-.+-|+|||++++.-+..    
T Consensus        77 ~~~d~~~~~~-~~~fD~v~~~~~l~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  133 (284)
T 3gu3_A           77 LEGDATEIEL-NDKYDIAICHAFLLHMTT----------------------PETMLQKMIHSVKKGGKIICFEPHWISNM  133 (284)
T ss_dssp             EESCTTTCCC-SSCEEEEEEESCGGGCSS----------------------HHHHHHHHHHTEEEEEEEEEEECCHHHHH
T ss_pred             EEcchhhcCc-CCCeeEEEECChhhcCCC----------------------HHHHHHHHHHHcCCCCEEEEEecchhccc
Confidence            3344444333 579999999999999644                      4567777888999999999886541    


Q ss_pred             -C--CCCCCC-chHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          158 -D--NFHATP-GEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       158 -~--~~~~~~-~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                       .  ..+... .......|.++..++      .... ..  ..++.+++..+++++| |+..+...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~--~~~~~~~l~~~l~~aG-F~~v~~~~  189 (284)
T 3gu3_A          134 ASYLLDGEKQSEFIQLGVLQKLFESD------TQRN-GK--DGNIGMKIPIYLSELG-VKNIECRV  189 (284)
T ss_dssp             HSEEETTSCHHHHCCHHHHHHHHHHH------HHHT-CC--CTTGGGTHHHHHHHTT-CEEEEEEE
T ss_pred             ccceecCcchhhccchHHHHHHHHHH------hhhh-cc--cccHHHHHHHHHHHcC-CCeEEEEE
Confidence             0  000000 000022333332221      1111 11  2334568999999999 88766643

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.87  E-value=1.6e-05  Score=71.58  Aligned_cols=52  Identities=15%  Similarity=0.103  Sum_probs=41.8

Q ss_pred             cCCCCcccEEEec-cccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           90 LFPHNFLDFVYSS-YALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        90 l~P~~sv~~~~Ss-~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      ++|++++|+|+++ .++|++......               .+++..+|+.-++-|+|||++++....
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~---------------~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGD---------------QSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSS---------------SHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccCCCeEEEEEcChHHhhcCccccC---------------HHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            3789999999999 899997653321               245778889999999999999998753

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.84  E-value=3.3e-05  Score=68.73  Aligned_cols=102  Identities=14%  Similarity=0.228  Sum_probs=61.3

Q ss_pred             cCCCCcccEEEecc-ccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC--Cch
Q 045960           90 LFPHNFLDFVYSSY-ALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT--PGE  166 (300)
Q Consensus        90 l~P~~sv~~~~Ss~-alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~--~~~  166 (300)
                      -+|++++|+|+++. .+||...                      ...+|+.-.+-|+|||++++...+.......  ...
T Consensus       109 ~~~~~~fD~v~~~~~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~  166 (260)
T 2avn_A          109 PFPSGAFEAVLALGDVLSYVEN----------------------KDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKD  166 (260)
T ss_dssp             CSCTTCEEEEEECSSHHHHCSC----------------------HHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEEcchhhhcccc----------------------HHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcch
Confidence            37889999999986 5678443                      4667778889999999999998765310000  000


Q ss_pred             HHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          167 PMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       167 ~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      .. ..+......|...... ..+ .++.++.+++|++++   +| |++.++...
T Consensus       167 ~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l---aG-f~~~~~~~~  213 (260)
T 2avn_A          167 AW-DQITRFLKTQTTSVGT-TLF-SFNSYAFKPEDLDSL---EG-FETVDIRGI  213 (260)
T ss_dssp             CH-HHHHHHHHHCEEEEEC-SSE-EEEEECBCGGGGSSC---TT-EEEEEEEEE
T ss_pred             hH-HHHHHHHhccccccCC-Cce-eEEEeccCHHHHHHh---cC-ceEEEEECC
Confidence            01 1122223334322110 011 223347899999988   77 998887765

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.81  E-value=8.8e-05  Score=66.52  Aligned_cols=105  Identities=15%  Similarity=0.049  Sum_probs=64.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCc-eeeee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGS-CFVAA   81 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~-~f~~~   81 (300)
                      +|+|+||++|..+..+...+           |   |+=.||--|.-           +.....+.+. -.+.++ ..+.+
T Consensus        80 ~VldlG~G~G~~~~~la~~V-----------G---~~G~V~avD~s-----------~~~~~~l~~~-a~~~~ni~~V~~  133 (233)
T 4df3_A           80 RILYLGIASGTTASHMSDII-----------G---PRGRIYGVEFA-----------PRVMRDLLTV-VRDRRNIFPILG  133 (233)
T ss_dssp             EEEEETCTTSHHHHHHHHHH-----------C---TTCEEEEEECC-----------HHHHHHHHHH-STTCTTEEEEES
T ss_pred             EEEEecCcCCHHHHHHHHHh-----------C---CCceEEEEeCC-----------HHHHHHHHHh-hHhhcCeeEEEE
Confidence            79999999999887654322           2   23455555421           1111111111 111123 44556


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      ..+....--++.+++|++|+..+.||                        |-..++..-.+-|||||++++.+-.+
T Consensus       134 d~~~p~~~~~~~~~vDvVf~d~~~~~------------------------~~~~~l~~~~r~LKpGG~lvI~ik~r  185 (233)
T 4df3_A          134 DARFPEKYRHLVEGVDGLYADVAQPE------------------------QAAIVVRNARFFLRDGGYMLMAIKAR  185 (233)
T ss_dssp             CTTCGGGGTTTCCCEEEEEECCCCTT------------------------HHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             eccCccccccccceEEEEEEeccCCh------------------------hHHHHHHHHHHhccCCCEEEEEEecc
Confidence            66666665677889999998777766                        12456666778899999999987444

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.75  E-value=4.3e-05  Score=69.04  Aligned_cols=90  Identities=16%  Similarity=0.231  Sum_probs=67.0

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|+|+|+.+|||+..-                  ..|+..+|+.-++-|||||+|++...-...  ...      
T Consensus       170 ~~~~~fD~V~~~~~l~~~~~~------------------~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~--~~~------  223 (289)
T 2g72_A          170 PAPLPADALVSAFCLEAVSPD------------------LASFQRALDHITTLLRPGGHLLLIGALEES--WYL------  223 (289)
T ss_dssp             SSCSSEEEEEEESCHHHHCSS------------------HHHHHHHHHHHHTTEEEEEEEEEEEEESCC--EEE------
T ss_pred             cCCCCCCEEEehhhhhhhcCC------------------HHHHHHHHHHHHHhcCCCCEEEEEEecCcc--eEE------
Confidence            678899999999999996641                  235788899999999999999997422111  000      


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                                     ...- ..|.++.+.+|+++++++.| |++.+++.+..+
T Consensus       224 ---------------~~~~-~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~~~  259 (289)
T 2g72_A          224 ---------------AGEA-RLTVVPVSEEEVREALVRSG-YKVRDLRTYIMP  259 (289)
T ss_dssp             ---------------ETTE-EEECCCCCHHHHHHHHHHTT-EEEEEEEEEECC
T ss_pred             ---------------cCCe-eeeeccCCHHHHHHHHHHcC-CeEEEeeEeecc
Confidence                           0112 34567789999999999999 999998877643

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.68  E-value=0.00023  Score=59.04  Aligned_cols=52  Identities=10%  Similarity=0.124  Sum_probs=40.1

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      +.+.. .+|++++|+++++..+||-                     ..+...+|+.-.+-|+|||++++.....
T Consensus       109 ~d~~~-~~~~~~~D~v~~~~~~~~~---------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          109 SDLYE-NVKDRKYNKIITNPPIRAG---------------------KEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             CSTTT-TCTTSCEEEEEECCCSTTC---------------------HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             Cchhc-ccccCCceEEEECCCcccc---------------------hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            34444 4567899999999999881                     2346778888899999999999998654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.62  E-value=9e-05  Score=60.28  Aligned_cols=56  Identities=14%  Similarity=0.102  Sum_probs=39.4

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      +|++++|+++++..+||...       +. ...   .........+|+.-.+-|+|||++++.....
T Consensus        84 ~~~~~~D~i~~~~~~~~~~~-------~~-~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           84 VGDSKVQVVMSDMAPNMSGT-------PA-VDI---PRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HTTCCEEEEEECCCCCCCSC-------HH-HHH---HHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCCCceeEEEECCCccccCC-------Cc-cch---HHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            67889999999999999654       10 000   0012223678888888999999999877644

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.61  E-value=0.00026  Score=61.47  Aligned_cols=129  Identities=16%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+...               .|..+|+.-|.-..   .+-.    ....... .+  ..++-+  +
T Consensus        41 ~vLDiGcG~G~~~~~la~~---------------~p~~~v~giD~s~~---~l~~----a~~~~~~-~~--~~nv~~--~   93 (213)
T 2fca_A           41 IHIEVGTGKGQFISGMAKQ---------------NPDINYIGIELFKS---VIVT----AVQKVKD-SE--AQNVKL--L   93 (213)
T ss_dssp             EEEEECCTTSHHHHHHHHH---------------CTTSEEEEECSCHH---HHHH----HHHHHHH-SC--CSSEEE--E
T ss_pred             eEEEEecCCCHHHHHHHHH---------------CCCCCEEEEEechH---HHHH----HHHHHHH-cC--CCCEEE--E
Confidence            6999999999988765321               13466676663211   0000    0011111 11  123222  2


Q ss_pred             CCccc--cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960           83 PGSFY--TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF  160 (300)
Q Consensus        83 pgSFy--~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~  160 (300)
                      -+...  ...+|++++|.++++.+.+|...--       ...       +-....||+.-++-|+|||++++.....   
T Consensus        94 ~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~-------~~~-------rl~~~~~l~~~~~~LkpgG~l~~~td~~---  156 (213)
T 2fca_A           94 NIDADTLTDVFEPGEVKRVYLNFSDPWPKKRH-------EKR-------RLTYSHFLKKYEEVMGKGGSIHFKTDNR---  156 (213)
T ss_dssp             CCCGGGHHHHCCTTSCCEEEEESCCCCCSGGG-------GGG-------STTSHHHHHHHHHHHTTSCEEEEEESCH---
T ss_pred             eCCHHHHHhhcCcCCcCEEEEECCCCCcCccc-------ccc-------ccCcHHHHHHHHHHcCCCCEEEEEeCCH---
Confidence            23332  2458899999999988888854200       000       0012567788888999999999876211   


Q ss_pred             CCCCchHHHHHHHHHHHcCC
Q 045960          161 HATPGEPMLMVLKDMISEGL  180 (300)
Q Consensus       161 ~~~~~~~l~~al~~mv~eG~  180 (300)
                           +....++..|.+.|.
T Consensus       157 -----~~~~~~~~~~~~~g~  171 (213)
T 2fca_A          157 -----GLFEYSLKSFSEYGL  171 (213)
T ss_dssp             -----HHHHHHHHHHHHHTC
T ss_pred             -----HHHHHHHHHHHHCCC
Confidence                 234455555556664

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.57  E-value=0.00049  Score=58.15  Aligned_cols=55  Identities=9%  Similarity=0.146  Sum_probs=37.0

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +|++++|+|+|+.++||...        .. ...+  +..+....+|+.-.+-|+|||+|++.+..
T Consensus       102 ~~~~~fD~v~~~~~~~~~g~--------~~-~d~~--~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A          102 LQDKKIDIILSDAAVPCIGN--------KI-DDHL--NSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             HTTCCEEEEEECCCCCCCSC--------HH-HHHH--HHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCCcccEEEeCCCcCCCCC--------cc-cCHH--HHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence            67889999999999999422        00 0000  01122345777778889999999987654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.53  E-value=0.00038  Score=64.38  Aligned_cols=87  Identities=18%  Similarity=0.256  Sum_probs=55.9

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|..++|++.+..++|||.+                         +|..-++-|+|||++++.+-  +.-+... +.+. 
T Consensus       147 l~~~~fD~v~~d~sf~sl~~-------------------------vL~e~~rvLkpGG~lv~lvk--Pqfe~~~-~~~~-  197 (291)
T 3hp7_A          147 FTEGLPSFASIDVSFISLNL-------------------------ILPALAKILVDGGQVVALVK--PQFEAGR-EQIG-  197 (291)
T ss_dssp             CTTCCCSEEEECCSSSCGGG-------------------------THHHHHHHSCTTCEEEEEEC--GGGTSCG-GGCC-
T ss_pred             CCCCCCCEEEEEeeHhhHHH-------------------------HHHHHHHHcCcCCEEEEEEC--cccccCh-hhcC-
Confidence            57778999999999998644                         45556788999999999741  1110000 0000 


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                            ..|.+..        .-.+..+.+++.+.+++.| |.+..+..-.
T Consensus       198 ------~~G~vrd--------~~~~~~~~~~v~~~~~~~G-f~v~~~~~sp  233 (291)
T 3hp7_A          198 ------KNGIVRE--------SSIHEKVLETVTAFAVDYG-FSVKGLDFSP  233 (291)
T ss_dssp             -------CCCCCC--------HHHHHHHHHHHHHHHHHTT-EEEEEEEECS
T ss_pred             ------CCCccCC--------HHHHHHHHHHHHHHHHHCC-CEEEEEEECC
Confidence                  1233321        1224457899999999998 9988876543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.53  E-value=0.00033  Score=65.72  Aligned_cols=103  Identities=15%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+.+.                +..+|+.-|+. . .-...+..      ... .+.  .+ -+..+
T Consensus        69 ~VLDvGcG~G~~~~~la~~----------------g~~~v~gvD~s-~-~l~~a~~~------~~~-~~~--~~-~v~~~  120 (349)
T 3q7e_A           69 VVLDVGSGTGILCMFAAKA----------------GARKVIGIECS-S-ISDYAVKI------VKA-NKL--DH-VVTII  120 (349)
T ss_dssp             EEEEESCTTSHHHHHHHHT----------------TCSEEEEEECS-T-HHHHHHHH------HHH-TTC--TT-TEEEE
T ss_pred             EEEEEeccchHHHHHHHHC----------------CCCEEEEECcH-H-HHHHHHHH------HHH-cCC--CC-cEEEE
Confidence            7999999999877755421                12578888875 2 32222211      111 111  11 01223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      -++...--+|.+++|+++|....|++...+                   ++..+|..+.+-|+|||+|+.
T Consensus       121 ~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~-------------------~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          121 KGKVEEVELPVEKVDIIISEWMGYCLFYES-------------------MLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             ESCTTTCCCSSSCEEEEEECCCBBTBTBTC-------------------CHHHHHHHHHHHEEEEEEEES
T ss_pred             ECcHHHccCCCCceEEEEEccccccccCch-------------------hHHHHHHHHHHhCCCCCEEcc
Confidence            344444457889999999988766655433                   367889999999999999973

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.51  E-value=0.00056  Score=58.74  Aligned_cols=153  Identities=9%  Similarity=0.015  Sum_probs=81.5

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...               .|..+|+.-|+-..=...+.+.....   . ...+  .+++-  .
T Consensus        29 ~~vLDiGcG~G~~~~~la~~---------------~p~~~v~gvD~s~~~l~~~~~~a~~~---~-~~~~--~~~v~--~   85 (218)
T 3mq2_A           29 DVVLDVGTGDGKHPYKVARQ---------------NPSRLVVALDADKSRMEKISAKAAAK---P-AKGG--LPNLL--Y   85 (218)
T ss_dssp             EEEEEESCTTCHHHHHHHHH---------------CTTEEEEEEESCGGGGHHHHHHHTSC---G-GGTC--CTTEE--E
T ss_pred             CEEEEecCCCCHHHHHHHHH---------------CCCCEEEEEECCHHHHHHHHHHHHHh---h-hhcC--CCceE--E
Confidence            37999999999998765431               13467888875432222221111000   0 0001  12221  1


Q ss_pred             cCCccccccCCCCcccEEE---eccccc--cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           82 SPGSFYTRLFPHNFLDFVY---SSYALH--WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~---Ss~alH--WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +-+....--+++++ |.++   ++..+|  |+..                      ...+|+.-++-|||||++++.+..
T Consensus        86 ~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~~~~  142 (218)
T 3mq2_A           86 LWATAERLPPLSGV-GELHVLMPWGSLLRGVLGS----------------------SPEMLRGMAAVCRPGASFLVALNL  142 (218)
T ss_dssp             EECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTS----------------------SSHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             EecchhhCCCCCCC-CEEEEEccchhhhhhhhcc----------------------HHHHHHHHHHHcCCCcEEEEEecc
Confidence            23444443355655 5555   333332  4322                      356677788899999999997643


Q ss_pred             cCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          157 NDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       157 ~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                      ..-...                  +.  ++... ..+......++++..+++.| |+|.+++.+..
T Consensus       143 ~~~~~~------------------~~--~~~~~-~~~~~~~~~~~l~~~l~~aG-f~i~~~~~~~~  186 (218)
T 3mq2_A          143 HAWRPS------------------VP--EVGEH-PEPTPDSADEWLAPRYAEAG-WKLADCRYLEP  186 (218)
T ss_dssp             GGBTTB------------------CG--GGTTC-CCCCHHHHHHHHHHHHHHTT-EEEEEEEEECH
T ss_pred             cccccc------------------cc--ccccC-CccchHHHHHHHHHHHHHcC-CCceeeeccch
Confidence            321110                  00  11111 11112223566888999998 99999988743

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.49  E-value=0.00048  Score=65.73  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...            +     .+|+..|.-   -..+-    ........ .+.  .   +..+
T Consensus       236 ~VLDlGcG~G~~~~~la~~------------g-----~~V~gvDis---~~al~----~A~~n~~~-~~~--~---v~~~  285 (381)
T 3dmg_A          236 QVLDLGAGYGALTLPLARM------------G-----AEVVGVEDD---LASVL----SLQKGLEA-NAL--K---AQAL  285 (381)
T ss_dssp             EEEEETCTTSTTHHHHHHT------------T-----CEEEEEESB---HHHHH----HHHHHHHH-TTC--C---CEEE
T ss_pred             EEEEEeeeCCHHHHHHHHc------------C-----CEEEEEECC---HHHHH----HHHHHHHH-cCC--C---eEEE
Confidence            7999999999999866431            1     366666641   11111    11111111 111  1   2224


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -+....-..+++++|+|+|+..+||.....                 ..+...+|+.-.+-|+|||++++..
T Consensus       286 ~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~-----------------~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          286 HSDVDEALTEEARFDIIVTNPPFHVGGAVI-----------------LDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             ECSTTTTSCTTCCEEEEEECCCCCTTCSSC-----------------CHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcchhhccccCCCeEEEEECCchhhccccc-----------------HHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            466666666778999999999999965543                 2356788888889999999999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.46  E-value=0.0011  Score=56.40  Aligned_cols=47  Identities=9%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +.+.+..  ++++++|+++++..+||                         +..+|+.-.+-|+|||++++...
T Consensus       114 ~~~d~~~--~~~~~fD~i~~~~~~~~-------------------------~~~~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A          114 QKTSLLA--DVDGKFDLIVANILAEI-------------------------LLDLIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             EESSTTT--TCCSCEEEEEEESCHHH-------------------------HHHHGGGSGGGEEEEEEEEEEEE
T ss_pred             Eeccccc--cCCCCceEEEECCcHHH-------------------------HHHHHHHHHHhcCCCCEEEEEec
Confidence            3344443  35689999999988777                         34566777788999999998643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.39  E-value=0.00031  Score=59.45  Aligned_cols=62  Identities=19%  Similarity=0.084  Sum_probs=42.3

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      -+|++++|+|+++.++|.+.........+.       .....|...+|+.-.+-|+|||++++...+.+
T Consensus       102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          102 DFPSASFDVVLEKGTLDALLAGERDPWTVS-------SEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             CSCSSCEEEEEEESHHHHHTTTCSCTTSCC-------HHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             CCCCCcccEEEECcchhhhccccccccccc-------cchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence            467889999999999987642111000000       11234678888888999999999999886553

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.38  E-value=0.00067  Score=56.60  Aligned_cols=52  Identities=13%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ++++++|+++++  ++|+..-...      +.     ....+...+|+.-.+-|+|||++++...
T Consensus        85 ~~~~~fD~v~~~--~~~~~~~~~~------~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           85 YVREPIRAAIFN--LGYLPSADKS------VI-----TKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             TCCSCEEEEEEE--EC----------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hccCCcCEEEEe--CCCCCCcchh------cc-----cChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            457889999876  3443221100      00     0123445667777889999999998764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.37  E-value=0.00035  Score=59.57  Aligned_cols=47  Identities=17%  Similarity=0.116  Sum_probs=35.9

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +-+.....+.+.+++|+++++.++||+   |+                         .-.+-|+|||++++.+..
T Consensus       130 ~~~d~~~~~~~~~~~D~i~~~~~~~~~---~~-------------------------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          130 RHGDGWQGWQARAPFDAIIVTAAPPEI---PT-------------------------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EESCGGGCCGGGCCEEEEEESSBCSSC---CT-------------------------HHHHTEEEEEEEEEEECS
T ss_pred             EECCcccCCccCCCccEEEEccchhhh---hH-------------------------HHHHhcccCcEEEEEEcC
Confidence            445566666677899999999999994   42                         124679999999999865

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.37  E-value=0.00028  Score=66.96  Aligned_cols=104  Identities=19%  Similarity=0.228  Sum_probs=66.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+...            |    .-+|+.-|..  +.-...+..-      .. .+.. .++  ..+
T Consensus        66 ~VLDlGcGtG~ls~~la~~------------g----~~~V~gvD~s--~~~~~a~~~~------~~-~~~~-~~v--~~~  117 (376)
T 3r0q_C           66 TVLDVGTGSGILAIWSAQA------------G----ARKVYAVEAT--KMADHARALV------KA-NNLD-HIV--EVI  117 (376)
T ss_dssp             EEEEESCTTTHHHHHHHHT------------T----CSEEEEEESS--TTHHHHHHHH------HH-TTCT-TTE--EEE
T ss_pred             EEEEeccCcCHHHHHHHhc------------C----CCEEEEEccH--HHHHHHHHHH------HH-cCCC-CeE--EEE
Confidence            7999999999887754321            2    1378888874  4433333211      11 1110 111  223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -+....-.+| +++|+++|....|++...                   .++..+|+.+.+=|+|||+|++.-
T Consensus       118 ~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e-------------------~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          118 EGSVEDISLP-EKVDVIISEWMGYFLLRE-------------------SMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             ESCGGGCCCS-SCEEEEEECCCBTTBTTT-------------------CTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             ECchhhcCcC-CcceEEEEcChhhcccch-------------------HHHHHHHHHHHhhCCCCeEEEEec
Confidence            3444444455 899999998878887652                   246788999999999999997653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.36  E-value=0.00034  Score=61.14  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=36.6

Q ss_pred             cCCccccc--cCCCCcccEEEe-ccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           82 SPGSFYTR--LFPHNFLDFVYS-SYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        82 vpgSFy~~--l~P~~sv~~~~S-s~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      +-+....-  -+|++++|+|++ .+++++ ....                 ..++..+|+.-.+-|||||+|++.
T Consensus       113 ~~~d~~~~~~~~~~~~fD~V~~d~~~~~~-~~~~-----------------~~~~~~~l~~~~r~LkpgG~l~~~  169 (236)
T 1zx0_A          113 LKGLWEDVAPTLPDGHFDGILYDTYPLSE-ETWH-----------------THQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             EESCHHHHGGGSCTTCEEEEEECCCCCBG-GGTT-----------------THHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             EecCHHHhhcccCCCceEEEEECCcccch-hhhh-----------------hhhHHHHHHHHHHhcCCCeEEEEE
Confidence            33444443  478899999999 776632 2211                 234567788888999999998764

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.34  E-value=0.0014  Score=57.32  Aligned_cols=104  Identities=18%  Similarity=0.224  Sum_probs=60.2

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...            +     .+|+..|+-.. .-...      ...... .+.   +  +..
T Consensus        43 ~~vLDlGcG~G~~~~~l~~~------------~-----~~v~gvD~s~~-~l~~a------~~~~~~-~~~---~--v~~   92 (252)
T 1wzn_A           43 RRVLDLACGTGIPTLELAER------------G-----YEVVGLDLHEE-MLRVA------RRKAKE-RNL---K--IEF   92 (252)
T ss_dssp             CEEEEETCTTCHHHHHHHHT------------T-----CEEEEEESCHH-HHHHH------HHHHHH-TTC---C--CEE
T ss_pred             CEEEEeCCCCCHHHHHHHHC------------C-----CeEEEEECCHH-HHHHH------HHHHHh-cCC---c--eEE
Confidence            37999999999987755321            1     35666664211 00011      111111 111   1  112


Q ss_pred             cCCccccccCCCCcccEEEecc-ccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSY-ALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~-alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +.+.+..-- +++++|+|++.. ++|+++                    ..|...+|+.-++-|+|||++++.+..
T Consensus        93 ~~~d~~~~~-~~~~fD~v~~~~~~~~~~~--------------------~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A           93 LQGDVLEIA-FKNEFDAVTMFFSTIMYFD--------------------EEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             EESCGGGCC-CCSCEEEEEECSSGGGGSC--------------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EECChhhcc-cCCCccEEEEcCCchhcCC--------------------HHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            334444322 347899999874 455532                    235778888889999999999988753

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.34  E-value=0.00055  Score=66.55  Aligned_cols=49  Identities=20%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             cCCccccccCCC--CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           82 SPGSFYTRLFPH--NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        82 vpgSFy~~l~P~--~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      +-|.|..--++.  .++|+|+++..++|    |                   |....|....+.|||||++|+.
T Consensus       237 i~GD~~~lp~~d~~~~aDVVf~Nn~~F~----p-------------------dl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          237 ERGDFLSEEWRERIANTSVIFVNNFAFG----P-------------------EVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             EECCTTSHHHHHHHHTCSEEEECCTTCC----H-------------------HHHHHHHHHHTTSCTTCEEEES
T ss_pred             EECcccCCccccccCCccEEEEcccccC----c-------------------hHHHHHHHHHHcCCCCcEEEEe
Confidence            445555433333  46899999888766    1                   3455566678899999999876

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.29  E-value=9.3e-05  Score=65.79  Aligned_cols=67  Identities=12%  Similarity=0.188  Sum_probs=42.1

Q ss_pred             HHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEE
Q 045960          136 FLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQ  215 (300)
Q Consensus       136 fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~  215 (300)
                      +|+.-.+-|+|||++++.+  .+        .....+..+-..|++..        ...+..+.+|+.+.+++.| |++.
T Consensus       119 ~l~~i~rvLkpgG~lv~~~--~p--------~~e~~~~~~~~~G~~~d--------~~~~~~~~~~l~~~l~~aG-f~v~  179 (232)
T 3opn_A          119 ILPPLYEILEKNGEVAALI--KP--------QFEAGREQVGKNGIIRD--------PKVHQMTIEKVLKTATQLG-FSVK  179 (232)
T ss_dssp             THHHHHHHSCTTCEEEEEE--CH--------HHHSCHHHHC-CCCCCC--------HHHHHHHHHHHHHHHHHHT-EEEE
T ss_pred             HHHHHHHhccCCCEEEEEE--Cc--------ccccCHHHhCcCCeecC--------cchhHHHHHHHHHHHHHCC-CEEE
Confidence            5566778899999999965  11        11222222223354321        1123348999999999999 9998


Q ss_pred             EEEEEe
Q 045960          216 EVETFN  221 (300)
Q Consensus       216 ~~e~~~  221 (300)
                      .++...
T Consensus       180 ~~~~~p  185 (232)
T 3opn_A          180 GLTFSP  185 (232)
T ss_dssp             EEEECS
T ss_pred             EEEEcc
Confidence            877553

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.27  E-value=0.0014  Score=55.10  Aligned_cols=47  Identities=13%  Similarity=-0.024  Sum_probs=35.7

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHH--hhccCceeEEEEeecC
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSE--ELKSQGRMVLTLLYND  158 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~--EL~~GG~~vl~~~g~~  158 (300)
                      +|++++|+++++..+||..                     .++..+|+.-.+  -|+|||++++....+.
T Consensus       109 ~~~~~fD~i~~~~p~~~~~---------------------~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          109 GTTSPVDLVLADPPYNVDS---------------------ADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CCSSCCSEEEECCCTTSCH---------------------HHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             ccCCCccEEEECCCCCcch---------------------hhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            4678999999998888831                     245566666666  8999999999886554

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.24  E-value=0.001  Score=55.42  Aligned_cols=57  Identities=11%  Similarity=0.026  Sum_probs=35.1

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +++.. .+|++++|+++|+..+||.+..+. +..            ..|...+++.-.+.| |||++++...
T Consensus        68 ~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~l-pgG~l~~~~~  124 (170)
T 3q87_B           68 ADLLC-SINQESVDVVVFNPPYVPDTDDPI-IGG------------GYLGREVIDRFVDAV-TVGMLYLLVI  124 (170)
T ss_dssp             CSTTT-TBCGGGCSEEEECCCCBTTCCCTT-TBC------------CGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred             CChhh-hcccCCCCEEEECCCCccCCcccc-ccC------------CcchHHHHHHHHhhC-CCCEEEEEEe
Confidence            44444 456689999999999999766321 110            111223344444555 9999988764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.24  E-value=0.00035  Score=61.21  Aligned_cols=111  Identities=12%  Similarity=0.115  Sum_probs=63.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+..        .       .|...|+--|.-.+   .+-.    ....... .+  ..++-  -+
T Consensus        37 ~vLDiGcG~G~~~~~lA~--------~-------~p~~~v~giD~s~~---~l~~----a~~~~~~-~~--l~nv~--~~   89 (218)
T 3dxy_A           37 VTLEIGFGMGASLVAMAK--------D-------RPEQDFLGIEVHSP---GVGA----CLASAHE-EG--LSNLR--VM   89 (218)
T ss_dssp             EEEEESCTTCHHHHHHHH--------H-------CTTSEEEEECSCHH---HHHH----HHHHHHH-TT--CSSEE--EE
T ss_pred             eEEEEeeeChHHHHHHHH--------H-------CCCCeEEEEEecHH---HHHH----HHHHHHH-hC--CCcEE--EE
Confidence            699999999988775532        1       23467777775321   1111    0111111 11  12322  23


Q ss_pred             CCcc---ccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSF---YTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSF---y~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -+..   ....+|++++|.+++++...|-..--.        .    +..  --..||+.-++-|||||++++..
T Consensus        90 ~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~--------~----rr~--~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A           90 CHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHN--------K----RRI--VQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             CSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGG--------G----GSS--CSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCHHHHHHHHcCCCChheEEEeCCCCccchhhh--------h----hhh--hhHHHHHHHHHHcCCCcEEEEEe
Confidence            3333   334689999999999999998433000        0    000  00247888889999999998876

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.23  E-value=0.00072  Score=55.64  Aligned_cols=101  Identities=15%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...               .|..+|+..|.-..=-..       ..+... ..+.. .++++. 
T Consensus        27 ~~vldiG~G~G~~~~~l~~~---------------~~~~~v~~vD~~~~~~~~-------a~~~~~-~~~~~-~~~~~~-   81 (178)
T 3hm2_A           27 ETLWDIGGGSGSIAIEWLRS---------------TPQTTAVCFEISEERRER-------ILSNAI-NLGVS-DRIAVQ-   81 (178)
T ss_dssp             EEEEEESTTTTHHHHHHHTT---------------SSSEEEEEECSCHHHHHH-------HHHHHH-TTTCT-TSEEEE-
T ss_pred             CeEEEeCCCCCHHHHHHHHH---------------CCCCeEEEEeCCHHHHHH-------HHHHHH-HhCCC-CCEEEe-
Confidence            37999999999877754321               134778888753211110       011111 11110 144333 


Q ss_pred             cCCccccccCCC--CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           82 SPGSFYTRLFPH--NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        82 vpgSFy~~l~P~--~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                        +.... -+|.  +++|+++++.++|| .                         .+|+.-.+-|+|||++++....
T Consensus        82 --~d~~~-~~~~~~~~~D~i~~~~~~~~-~-------------------------~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           82 --QGAPR-AFDDVPDNPDVIFIGGGLTA-P-------------------------GVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             --CCTTG-GGGGCCSCCSEEEECC-TTC-T-------------------------THHHHHHHTCCTTCEEEEEECS
T ss_pred             --cchHh-hhhccCCCCCEEEECCcccH-H-------------------------HHHHHHHHhcCCCCEEEEEeec
Confidence              33333 4455  89999999999998 1                         2445566789999999987643

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.23  E-value=0.0025  Score=55.98  Aligned_cols=72  Identities=17%  Similarity=0.277  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCC
Q 045960          132 DFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGS  211 (300)
Q Consensus       132 D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gs  211 (300)
                      +...+|+.-++-|||||++++.........     .+...     ..+      .. . ..|.|++. +|+.+.+++.| 
T Consensus       117 ~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-----~~~~~-----~~~------~~-~-~~~~~~~~-~el~~~l~~aG-  176 (225)
T 3p2e_A          117 PNRDILSNVADLAKKEAHFEFVTTYSDSYE-----EAEIK-----KRG------LP-L-LSKAYFLS-EQYKAELSNSG-  176 (225)
T ss_dssp             TCHHHHHHHHTTEEEEEEEEEEECCCC--------------------------------CCHHHHHS-HHHHHHHHHHT-
T ss_pred             chHHHHHHHHHhcCCCcEEEEEEeccccch-----hchhh-----hcC------CC-C-CChhhcch-HHHHHHHHHcC-
Confidence            345678888899999999999542222110     00000     001      01 1 12334433 47999999999 


Q ss_pred             eeEEEEEEEeec
Q 045960          212 FDIQEVETFNVS  223 (300)
Q Consensus       212 F~I~~~e~~~~~  223 (300)
                      |+|..++.+...
T Consensus       177 f~v~~~~~~~~~  188 (225)
T 3p2e_A          177 FRIDDVKELDNE  188 (225)
T ss_dssp             CEEEEEEEECHH
T ss_pred             CCeeeeeecCHH
Confidence            999999988644

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.16  E-value=0.0018  Score=59.10  Aligned_cols=40  Identities=13%  Similarity=0.229  Sum_probs=32.8

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      .+++|+|+|.+.|||+..                    .+....|+.-++-|+|||.|++
T Consensus       211 ~~~fDlI~crnvliyf~~--------------------~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          211 PGPFDAIFCRNVMIYFDK--------------------TTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             CCCEEEEEECSSGGGSCH--------------------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCeeEEEECCchHhCCH--------------------HHHHHHHHHHHHHhCCCcEEEE
Confidence            578999999999999643                    1246778888899999999976

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.12  E-value=0.0018  Score=54.93  Aligned_cols=101  Identities=15%  Similarity=0.058  Sum_probs=59.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...            +   |..+|+..|.-.. .-...      ...... .+.  .++  ..+
T Consensus        43 ~vLDiG~G~G~~~~~la~~------------~---~~~~v~~vD~s~~-~~~~a------~~~~~~-~~~--~~v--~~~   95 (204)
T 3e05_A           43 VMWDIGAGSASVSIEASNL------------M---PNGRIFALERNPQ-YLGFI------RDNLKK-FVA--RNV--TLV   95 (204)
T ss_dssp             EEEEETCTTCHHHHHHHHH------------C---TTSEEEEEECCHH-HHHHH------HHHHHH-HTC--TTE--EEE
T ss_pred             EEEEECCCCCHHHHHHHHH------------C---CCCEEEEEeCCHH-HHHHH------HHHHHH-hCC--CcE--EEE
Confidence            7999999999987755432            1   2356666664211 00000      011111 111  122  223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+.+...+.+..++|++++..+++   .                      ...+|+.-.+-|+|||++++...
T Consensus        96 ~~d~~~~~~~~~~~D~i~~~~~~~---~----------------------~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A           96 EAFAPEGLDDLPDPDRVFIGGSGG---M----------------------LEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             ECCTTTTCTTSCCCSEEEESCCTT---C----------------------HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             eCChhhhhhcCCCCCEEEECCCCc---C----------------------HHHHHHHHHHhcCCCeEEEEEec
Confidence            344444444457899999988775   2                      45677778888999999998764

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.12  E-value=0.00094  Score=60.64  Aligned_cols=42  Identities=10%  Similarity=0.096  Sum_probs=33.3

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ++++|+|+|+.++||+..                    .|....|+.-++-| |||++++.+.
T Consensus       108 ~~~fD~Vv~~~~l~~~~~--------------------~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          108 AGHFDFVLNDRLINRFTT--------------------EEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             TTCCSEEEEESCGGGSCH--------------------HHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             CCCccEEEEhhhhHhCCH--------------------HHHHHHHHHHHHhC-cCcEEEEEec
Confidence            578999999999998532                    34566677677778 9999999884

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.12  E-value=0.0036  Score=54.42  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=17.7

Q ss_pred             HHHHHHHHHhhccCceeEEEEe
Q 045960          134 STFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       134 ~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ..+|+.-.+-|+|||++++.+.
T Consensus       158 ~~~l~~~~~~LkpgG~l~i~~~  179 (230)
T 1fbn_A          158 EILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCcEEEEEEe
Confidence            4567777889999999999853

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.10  E-value=0.0014  Score=61.26  Aligned_cols=102  Identities=17%  Similarity=0.180  Sum_probs=59.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+..            .+    ..+|+.-|..  ..-...+      ..... .+.. .++-  .+
T Consensus        67 ~VLDiGcGtG~ls~~la~------------~g----~~~v~gvD~s--~~~~~a~------~~~~~-~~~~-~~i~--~~  118 (340)
T 2fyt_A           67 VVLDVGCGTGILSMFAAK------------AG----AKKVLGVDQS--EILYQAM------DIIRL-NKLE-DTIT--LI  118 (340)
T ss_dssp             EEEEETCTTSHHHHHHHH------------TT----CSEEEEEESS--THHHHHH------HHHHH-TTCT-TTEE--EE
T ss_pred             EEEEeeccCcHHHHHHHH------------cC----CCEEEEEChH--HHHHHHH------HHHHH-cCCC-CcEE--EE
Confidence            799999999987664431            11    2478888864  2222221      11111 1110 1221  12


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      -+...+--+|++++|+++|....+-+..                   ..++..+|..+.+-|+|||+++
T Consensus       119 ~~d~~~~~~~~~~~D~Ivs~~~~~~l~~-------------------~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          119 KGKIEEVHLPVEKVDVIISEWMGYFLLF-------------------ESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ESCTTTSCCSCSCEEEEEECCCBTTBTT-------------------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EeeHHHhcCCCCcEEEEEEcCchhhccC-------------------HHHHHHHHHHHHhhcCCCcEEE
Confidence            3444443478889999999763222222                   1246778999999999999998

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.08  E-value=0.00015  Score=67.64  Aligned_cols=106  Identities=15%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...            +   |..+|+..|...     -.  +......... .+.  ..-+   +
T Consensus       199 ~VLDlGcG~G~~~~~la~~------------~---~~~~v~~vD~s~-----~~--l~~a~~~~~~-~~~--~~~~---~  250 (343)
T 2pjd_A          199 KVLDVGCGAGVLSVAFARH------------S---PKIRLTLCDVSA-----PA--VEASRATLAA-NGV--EGEV---F  250 (343)
T ss_dssp             BCCBTTCTTSHHHHHHHHH------------C---TTCBCEEEESBH-----HH--HHHHHHHHHH-TTC--CCEE---E
T ss_pred             eEEEecCccCHHHHHHHHH------------C---CCCEEEEEECCH-----HH--HHHHHHHHHH-hCC--CCEE---E
Confidence            6899999999988755421            1   345677777421     10  1111111111 111  1112   3


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .+.++.  ++++++|+++|+..+||...                 ....+...+|+.-.+-|+|||++++...
T Consensus       251 ~~d~~~--~~~~~fD~Iv~~~~~~~g~~-----------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          251 ASNVFS--EVKGRFDMIISNPPFHDGMQ-----------------TSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             ECSTTT--TCCSCEEEEEECCCCCSSSH-----------------HHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             Eccccc--cccCCeeEEEECCCcccCcc-----------------CCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            445544  34789999999999998332                 1134578899999999999999998753

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.06  E-value=0.005  Score=54.59  Aligned_cols=123  Identities=11%  Similarity=0.074  Sum_probs=60.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+...               .+. +|+.-|+-..=....       ...... .+-. .++  ..+
T Consensus        52 ~vLDlG~G~G~~~~~la~~---------------~~~-~v~gvDi~~~~~~~a-------~~n~~~-~~~~-~~v--~~~  104 (259)
T 3lpm_A           52 KIIDLCSGNGIIPLLLSTR---------------TKA-KIVGVEIQERLADMA-------KRSVAY-NQLE-DQI--EII  104 (259)
T ss_dssp             EEEETTCTTTHHHHHHHTT---------------CCC-EEEEECCSHHHHHHH-------HHHHHH-TTCT-TTE--EEE
T ss_pred             EEEEcCCchhHHHHHHHHh---------------cCC-cEEEEECCHHHHHHH-------HHHHHH-CCCc-ccE--EEE
Confidence            7999999999877754321               122 677777522111111       011111 1110 112  223


Q ss_pred             CCccccc--cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTR--LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~--l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -+.+..-  -+|++++|+|+|+-.++..+.  ....++......-......++..+|+.-++-|+|||++++..
T Consensus       105 ~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          105 EYDLKKITDLIPKERADIVTCNPPYFATPD--TSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             CSCGGGGGGTSCTTCEEEEEECCCC-------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECcHHHhhhhhccCCccEEEECCCCCCCcc--ccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            3444332  267899999999866654311  000111111111111224578899999999999999999965

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.05  E-value=0.0069  Score=53.48  Aligned_cols=71  Identities=14%  Similarity=0.012  Sum_probs=43.6

Q ss_pred             cccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHH--HHHHHHHHHHHhhccCceeEEEEeecCCCCCCCc
Q 045960           88 TRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFES--DFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPG  165 (300)
Q Consensus        88 ~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~--D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~  165 (300)
                      ...||++++|.++.++.-.|..+-                +..+  ....+|+.-++-|+|||++++.....        
T Consensus       116 ~~~~~~~~~D~v~~~~~dp~~k~~----------------h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~--------  171 (235)
T 3ckk_A          116 PNFFYKGQLTKMFFLFPDPHFKRT----------------KHKWRIISPTLLAEYAYVLRVGGLVYTITDVL--------  171 (235)
T ss_dssp             HHHCCTTCEEEEEEESCC---------------------------CCCHHHHHHHHHHEEEEEEEEEEESCH--------
T ss_pred             hhhCCCcCeeEEEEeCCCchhhhh----------------hhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH--------
Confidence            345789999999998887774320                0000  01468888899999999998876221        


Q ss_pred             hHHHHHHHHHHHcCCCc
Q 045960          166 EPMLMVLKDMISEGLAE  182 (300)
Q Consensus       166 ~~l~~al~~mv~eG~i~  182 (300)
                      +....++..|...|.+.
T Consensus       172 ~~~~~~~~~l~~~~~f~  188 (235)
T 3ckk_A          172 ELHDWMCTHFEEHPLFE  188 (235)
T ss_dssp             HHHHHHHHHHHTSTTEE
T ss_pred             HHHHHHHHHHHHCCCcc
Confidence            34555666666666443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.03  E-value=0.0037  Score=52.30  Aligned_cols=114  Identities=19%  Similarity=0.228  Sum_probs=63.1

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+....    ...  ..+...|..+|+..|+-..-      .++              +--+.  .
T Consensus        25 ~vLDlGcG~G~~~~~la~~~----~~~--~~~~~~~~~~v~~vD~s~~~------~~~--------------~~~~~--~   76 (196)
T 2nyu_A           25 RVLDCGAAPGAWSQVAVQKV----NAA--GTDPSSPVGFVLGVDLLHIF------PLE--------------GATFL--C   76 (196)
T ss_dssp             EEEEETCCSCHHHHHHHHHT----TTT--CCCTTSCCCEEEEECSSCCC------CCT--------------TCEEE--C
T ss_pred             EEEEeCCCCCHHHHHHHHHh----ccc--cccccCCCceEEEEechhcc------cCC--------------CCeEE--E
Confidence            79999999999887654321    000  00011233678888865420      010              00111  0


Q ss_pred             CCcccc--------ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYT--------RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~--------~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      .+.+..        ..+|++++|+|+|..++||.-.-        . ...  .........+|+.-.+-|+|||++++..
T Consensus        77 ~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~--------~-~~~--~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           77 PADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFR--------D-LDH--DRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             SCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCH--------H-HHH--HHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCc--------c-cCH--HHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            222222        23567799999998777763220        0 000  0112234577888888999999999986


Q ss_pred             e
Q 045960          155 L  155 (300)
Q Consensus       155 ~  155 (300)
                      .
T Consensus       146 ~  146 (196)
T 2nyu_A          146 W  146 (196)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.01  E-value=0.0023  Score=52.74  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=29.7

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +++|+++++..+|+                         +..+|+.-.+-|+|||++++...
T Consensus        99 ~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           99 PDIDIAVVGGSGGE-------------------------LQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             CCEEEEEESCCTTC-------------------------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCEEEECCchHH-------------------------HHHHHHHHHHhcCCCcEEEEEec
Confidence            58999999877654                         35677777889999999998764

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.99  E-value=0.0034  Score=52.71  Aligned_cols=115  Identities=10%  Similarity=0.016  Sum_probs=60.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+....           +   |.-+|+.-|.-..=-...       ...... .+.. .++  ..+
T Consensus        25 ~vLDlGcG~G~~~~~l~~~~-----------~---~~~~v~~vD~s~~~~~~a-------~~~~~~-~~~~-~~v--~~~   79 (197)
T 3eey_A           25 TVVDATCGNGNDTAFLASLV-----------G---ENGRVFGFDIQDKAIANT-------TKKLTD-LNLI-DRV--TLI   79 (197)
T ss_dssp             EEEESCCTTSHHHHHHHHHH-----------C---TTCEEEEECSCHHHHHHH-------HHHHHH-TTCG-GGE--EEE
T ss_pred             EEEEcCCCCCHHHHHHHHHh-----------C---CCCEEEEEECCHHHHHHH-------HHHHHH-cCCC-CCe--EEE
Confidence            79999999998877654321           1   224677777432111110       111111 0100 111  223


Q ss_pred             CCcccccc-CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRL-FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l-~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+++..-. ++++++|+++++..+..-..  ..+...           .+|...+|+.-.+-|+|||++++...
T Consensus        80 ~~d~~~~~~~~~~~fD~v~~~~~~~~~~~--~~~~~~-----------~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           80 KDGHQNMDKYIDCPVKAVMFNLGYLPSGD--HSISTR-----------PETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             CSCGGGGGGTCCSCEEEEEEEESBCTTSC--TTCBCC-----------HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ECCHHHHhhhccCCceEEEEcCCcccCcc--cccccC-----------cccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            34433222 56689999999876611000  000001           12445578888889999999998764

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.99  E-value=0.0016  Score=56.18  Aligned_cols=45  Identities=22%  Similarity=0.011  Sum_probs=32.3

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +.....+.+.+++|++++..++|++.+                            .-.+-|+|||++++....
T Consensus       123 ~d~~~~~~~~~~fD~v~~~~~~~~~~~----------------------------~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          123 GDGTLGYEEEKPYDRVVVWATAPTLLC----------------------------KPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             SCGGGCCGGGCCEEEEEESSBBSSCCH----------------------------HHHHTEEEEEEEEEEECS
T ss_pred             CCcccccccCCCccEEEECCcHHHHHH----------------------------HHHHHcCCCcEEEEEEcC
Confidence            444443445678999999999998432                            134579999999998753

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.98  E-value=0.0031  Score=53.37  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=57.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+...               .|..+|+..|.-.. .-...+      ..... .+  ..+  +..+
T Consensus        68 ~vLDiG~G~G~~~~~l~~~---------------~~~~~v~~vD~s~~-~~~~a~------~~~~~-~~--~~~--v~~~  120 (207)
T 1jsx_A           68 RFIDVGTGPGLPGIPLSIV---------------RPEAHFTLLDSLGK-RVRFLR------QVQHE-LK--LEN--IEPV  120 (207)
T ss_dssp             EEEEETCTTTTTHHHHHHH---------------CTTSEEEEEESCHH-HHHHHH------HHHHH-TT--CSS--EEEE
T ss_pred             eEEEECCCCCHHHHHHHHH---------------CCCCEEEEEeCCHH-HHHHHH------HHHHH-cC--CCC--eEEE
Confidence            7999999999998865532               12356777774211 111110      11111 11  122  2223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      .+.+.. +.|.+++|++++...       +                   ++..+|+.-.+-|+|||++++..
T Consensus       121 ~~d~~~-~~~~~~~D~i~~~~~-------~-------------------~~~~~l~~~~~~L~~gG~l~~~~  165 (207)
T 1jsx_A          121 QSRVEE-FPSEPPFDGVISRAF-------A-------------------SLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ECCTTT-SCCCSCEEEEECSCS-------S-------------------SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ecchhh-CCccCCcCEEEEecc-------C-------------------CHHHHHHHHHHhcCCCcEEEEEe
Confidence            444443 336789999998531       1                   24577787888999999999874

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.98  E-value=0.0015  Score=62.07  Aligned_cols=111  Identities=15%  Similarity=0.058  Sum_probs=62.1

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+..        .       .|..+|+..|.-.   ..+    ......... .+-. ..+-+..
T Consensus       224 ~~VLDlGcG~G~~s~~la~--------~-------~p~~~V~gvD~s~---~al----~~Ar~n~~~-ngl~-~~~~v~~  279 (375)
T 4dcm_A          224 GEIVDLGCGNGVIGLTLLD--------K-------NPQAKVVFVDESP---MAV----ASSRLNVET-NMPE-ALDRCEF  279 (375)
T ss_dssp             SEEEEETCTTCHHHHHHHH--------H-------CTTCEEEEEESCH---HHH----HHHHHHHHH-HCGG-GGGGEEE
T ss_pred             CeEEEEeCcchHHHHHHHH--------H-------CCCCEEEEEECcH---HHH----HHHHHHHHH-cCCC-cCceEEE
Confidence            3799999999988876542        1       1346778777421   111    111111111 1100 0111222


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +-+.++. -+|++++|+|+|+-.+|+...++..                 ....+|+.-.+-|+|||++++..
T Consensus       280 ~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          280 MINNALS-GVEPFRFNAVLCNPPFHQQHALTDN-----------------VAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             EECSTTT-TCCTTCEEEEEECCCC-------CC-----------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eechhhc-cCCCCCeeEEEECCCcccCcccCHH-----------------HHHHHHHHHHHhCCCCcEEEEEE
Confidence            3455555 4688899999999999986554431                 12357777888899999999965

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=96.97  E-value=0.003  Score=58.50  Aligned_cols=102  Identities=18%  Similarity=0.206  Sum_probs=60.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+..            .+    .-+|+.-|..  ..-...+.      .... .+.. .++-  .+
T Consensus        41 ~VLDiGcGtG~ls~~la~------------~g----~~~v~~vD~s--~~~~~a~~------~~~~-~~~~-~~i~--~~   92 (328)
T 1g6q_1           41 IVLDVGCGTGILSMFAAK------------HG----AKHVIGVDMS--SIIEMAKE------LVEL-NGFS-DKIT--LL   92 (328)
T ss_dssp             EEEEETCTTSHHHHHHHH------------TC----CSEEEEEESS--THHHHHHH------HHHH-TTCT-TTEE--EE
T ss_pred             EEEEecCccHHHHHHHHH------------CC----CCEEEEEChH--HHHHHHHH------HHHH-cCCC-CCEE--EE
Confidence            799999999987764331            11    2478888874  23222221      1111 1110 1121  12


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      -+..-.--+|.+++|+++|....+.+....                   ++..+|..+.+-|+|||+++
T Consensus        93 ~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~-------------------~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1           93 RGKLEDVHLPFPKVDIIISEWMGYFLLYES-------------------MMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ESCTTTSCCSSSCEEEEEECCCBTTBSTTC-------------------CHHHHHHHHHHHEEEEEEEE
T ss_pred             ECchhhccCCCCcccEEEEeCchhhcccHH-------------------HHHHHHHHHHhhcCCCeEEE
Confidence            344433346778999999986555443322                   35678888999999999997

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.96  E-value=0.0071  Score=52.02  Aligned_cols=60  Identities=17%  Similarity=0.041  Sum_probs=34.4

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHH--HhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFL--NQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~--~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +|++++|+|+++-.+||...-..  ..+   ..++.  .....+...+|+.-.+-|+|||++++.+.
T Consensus       119 ~~~~~fD~I~~npp~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  180 (230)
T 3evz_A          119 VVEGTFDVIFSAPPYYDKPLGRV--LTE---REAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP  180 (230)
T ss_dssp             TCCSCEEEEEECCCCC--------------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             cccCceeEEEECCCCcCCccccc--cCh---hhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            45689999999988888544110  000   00000  00112346788888889999999999864

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.95  E-value=0.0013  Score=56.25  Aligned_cols=101  Identities=14%  Similarity=0.074  Sum_probs=57.3

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+....           +   |..+|+..|.-.+ .-...      .+.... .+.  .++  ..
T Consensus        79 ~~vLdiG~G~G~~~~~l~~~~-----------~---~~~~v~~vD~~~~-~~~~a------~~~~~~-~~~--~~v--~~  132 (215)
T 2yxe_A           79 MKVLEIGTGCGYHAAVTAEIV-----------G---EDGLVVSIERIPE-LAEKA------ERTLRK-LGY--DNV--IV  132 (215)
T ss_dssp             CEEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEEESCHH-HHHHH------HHHHHH-HTC--TTE--EE
T ss_pred             CEEEEECCCccHHHHHHHHHh-----------C---CCCEEEEEeCCHH-HHHHH------HHHHHH-cCC--CCe--EE
Confidence            379999999999887554321           1   2246666663211 11111      111111 111  222  12


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +.+.....+.+.+++|+++++.++|++.+                            .-.+-|+|||++++.+..
T Consensus       133 ~~~d~~~~~~~~~~fD~v~~~~~~~~~~~----------------------------~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          133 IVGDGTLGYEPLAPYDRIYTTAAGPKIPE----------------------------PLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             EESCGGGCCGGGCCEEEEEESSBBSSCCH----------------------------HHHHTEEEEEEEEEEESS
T ss_pred             EECCcccCCCCCCCeeEEEECCchHHHHH----------------------------HHHHHcCCCcEEEEEECC
Confidence            33444333333678999999999998432                            134679999999998853

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.86  E-value=0.0035  Score=55.85  Aligned_cols=18  Identities=22%  Similarity=0.189  Sum_probs=14.7

Q ss_pred             EEEeeCCCCCcccHHHHH
Q 045960            3 RFADLGCSSGPNALLPTW   20 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~   20 (300)
                      +|.|+||++|..|..+..
T Consensus        79 ~VLDlG~GtG~~t~~la~   96 (232)
T 3id6_C           79 KVLYLGAASGTTISHVSD   96 (232)
T ss_dssp             EEEEETCTTSHHHHHHHH
T ss_pred             EEEEEeecCCHHHHHHHH
Confidence            799999999997775543

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=96.84  E-value=0.0058  Score=59.38  Aligned_cols=38  Identities=11%  Similarity=-0.004  Sum_probs=28.7

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      .+++|+|+++.++++    |                   |+...|+...+.|+|||+|++.
T Consensus       321 ~~~FDvIvvn~~l~~----~-------------------d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          321 IPQCDVILVNNFLFD----E-------------------DLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             GGGCSEEEECCTTCC----H-------------------HHHHHHHHHHTTCCTTCEEEES
T ss_pred             cCCCCEEEEeCcccc----c-------------------cHHHHHHHHHHhCCCCeEEEEe
Confidence            467899999877743    1                   3455677788899999999875

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.81  E-value=0.0035  Score=55.84  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=33.8

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -++.... +|++++|+++++...|+                         +..++..-.+-|+|||++++...
T Consensus       173 ~~d~~~~-~~~~~fD~Vv~n~~~~~-------------------------~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          173 EGSLEAA-LPFGPFDLLVANLYAEL-------------------------HAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             ESCHHHH-GGGCCEEEEEEECCHHH-------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECChhhc-CcCCCCCEEEECCcHHH-------------------------HHHHHHHHHHHcCCCCEEEEEee
Confidence            3444443 57889999999876655                         34566667788999999998643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.80  E-value=0.0042  Score=53.82  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=28.4

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      .+++|+++++.+-|+                        +...+|+.-++-|||||++++.+..
T Consensus       124 ~~~fD~V~~~~~~~~------------------------~~~~~l~~~~r~LkpgG~l~i~~~~  163 (210)
T 1nt2_A          124 VEKVDLIYQDIAQKN------------------------QIEILKANAEFFLKEKGEVVIMVKA  163 (210)
T ss_dssp             CCCEEEEEECCCSTT------------------------HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccceeEEEEeccChh------------------------HHHHHHHHHHHHhCCCCEEEEEEec
Confidence            378999999832111                        1234567778889999999999743

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=96.75  E-value=0.0065  Score=53.14  Aligned_cols=98  Identities=16%  Similarity=0.058  Sum_probs=56.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+...               .|..+|+.-|.-. +--...+      ... ...+.  .+  +..+
T Consensus        73 ~vLDiG~G~G~~~~~la~~---------------~~~~~v~~vD~s~-~~~~~a~------~~~-~~~~~--~~--v~~~  125 (240)
T 1xdz_A           73 TICDVGAGAGFPSLPIKIC---------------FPHLHVTIVDSLN-KRITFLE------KLS-EALQL--EN--TTFC  125 (240)
T ss_dssp             EEEEECSSSCTTHHHHHHH---------------CTTCEEEEEESCH-HHHHHHH------HHH-HHHTC--SS--EEEE
T ss_pred             EEEEecCCCCHHHHHHHHh---------------CCCCEEEEEeCCH-HHHHHHH------HHH-HHcCC--CC--EEEE
Confidence            7999999999998865431               1235677777421 0000110      011 11111  23  2233


Q ss_pred             CCccccccCC---CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           83 PGSFYTRLFP---HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        83 pgSFy~~l~P---~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      -++...-.++   ++++|+|+|...       +                   |+..+|+.-.+-|+|||++++.
T Consensus       126 ~~d~~~~~~~~~~~~~fD~V~~~~~-------~-------------------~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          126 HDRAETFGQRKDVRESYDIVTARAV-------A-------------------RLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             ESCHHHHTTCTTTTTCEEEEEEECC-------S-------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             eccHHHhcccccccCCccEEEEecc-------C-------------------CHHHHHHHHHHhcCCCCEEEEE
Confidence            4444432332   578999998651       1                   2567788888999999999876

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=96.68  E-value=0.014  Score=50.09  Aligned_cols=20  Identities=20%  Similarity=0.094  Sum_probs=16.4

Q ss_pred             HHHHHHHhhccCceeEEEEe
Q 045960          136 FLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       136 fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +|+.-.+-|+|||++++...
T Consensus       136 ~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          136 LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             HHHHHHHHSCTTCEEEEEEC
T ss_pred             HHHHHHHhcCCCcEEEEEec
Confidence            66667788999999998774

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.67  E-value=0.0054  Score=53.72  Aligned_cols=100  Identities=17%  Similarity=0.200  Sum_probs=58.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...+           +   |..+|+..|+-.. .-...+      ..... .+.  .+ -+..+
T Consensus        96 ~vldiG~G~G~~~~~l~~~~-----------~---~~~~v~~~D~~~~-~~~~a~------~~~~~-~~~--~~-~v~~~  150 (255)
T 3mb5_A           96 FIVEAGVGSGALTLFLANIV-----------G---PEGRVVSYEIRED-FAKLAW------ENIKW-AGF--DD-RVTIK  150 (255)
T ss_dssp             EEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEECSCHH-HHHHHH------HHHHH-HTC--TT-TEEEE
T ss_pred             EEEEecCCchHHHHHHHHHh-----------C---CCeEEEEEecCHH-HHHHHH------HHHHH-cCC--CC-ceEEE
Confidence            79999999998887665432           1   2356777775211 111111      11111 111  11 12234


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+.+. ..+|++++|++++.        .|.                   ...+|+.-.+-|+|||++++...
T Consensus       151 ~~d~~-~~~~~~~~D~v~~~--------~~~-------------------~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          151 LKDIY-EGIEEENVDHVILD--------LPQ-------------------PERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             CSCGG-GCCCCCSEEEEEEC--------SSC-------------------GGGGHHHHHHHEEEEEEEEEEES
T ss_pred             ECchh-hccCCCCcCEEEEC--------CCC-------------------HHHHHHHHHHHcCCCCEEEEEEC
Confidence            45665 44889999999983        232                   12445566788999999988764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.65  E-value=0.0026  Score=55.42  Aligned_cols=47  Identities=17%  Similarity=0.173  Sum_probs=32.2

Q ss_pred             cCCccccccCCCCc-ccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           82 SPGSFYTRLFPHNF-LDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        82 vpgSFy~~l~P~~s-v~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      +.+.+. .-+|..+ +|+++++.++|++.+                            .-.+-|+|||++++.+...
T Consensus       145 ~~~d~~-~~~~~~~~fD~Ii~~~~~~~~~~----------------------------~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          145 ILGDGS-KGFPPKAPYDVIIVTAGAPKIPE----------------------------PLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             EESCGG-GCCGGGCCEEEEEECSBBSSCCH----------------------------HHHHTEEEEEEEEEEECSS
T ss_pred             EECCcc-cCCCCCCCccEEEECCcHHHHHH----------------------------HHHHhcCCCcEEEEEEecC
Confidence            334442 3345544 999999999998432                            1245799999999998643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.63  E-value=0.0028  Score=54.96  Aligned_cols=77  Identities=5%  Similarity=-0.090  Sum_probs=43.2

Q ss_pred             CC-CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHH
Q 045960           91 FP-HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML  169 (300)
Q Consensus        91 ~P-~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~  169 (300)
                      +| ++++|+|+|+.      .                      ...+|+.-.+-|+|||+++ ...+..+.     +.+.
T Consensus       106 ~~~~~~fD~v~~~~------~----------------------~~~~l~~~~~~LkpgG~l~-~~~~~~~~-----~~~~  151 (226)
T 3m33_A          106 AGLGAPFGLIVSRR------G----------------------PTSVILRLPELAAPDAHFL-YVGPRLNV-----PEVP  151 (226)
T ss_dssp             TTCCCCEEEEEEES------C----------------------CSGGGGGHHHHEEEEEEEE-EEESSSCC-----THHH
T ss_pred             CcCCCCEEEEEeCC------C----------------------HHHHHHHHHHHcCCCcEEE-EeCCcCCH-----HHHH
Confidence            55 78999999971      1                      1234555678899999998 22222211     2222


Q ss_pred             HHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHH
Q 045960          170 MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIV  206 (300)
Q Consensus       170 ~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i  206 (300)
                      +.   +...|. ....++.. ..+.++++.++.+...
T Consensus       152 ~~---l~~~Gf-~~~~~~~~-~~~~~~~~~~~~~~~~  183 (226)
T 3m33_A          152 ER---LAAVGW-DIVAEDHV-SVLAHAPTWEDWQMRG  183 (226)
T ss_dssp             HH---HHHTTC-EEEEEEEE-EEEEEECSHHHHHHHH
T ss_pred             HH---HHHCCC-eEEEEEee-eecccCcCHHHHhhhH
Confidence            22   234453 22334444 5666777777665443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.61  E-value=0.004  Score=53.71  Aligned_cols=38  Identities=13%  Similarity=0.022  Sum_probs=28.0

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +++|++|+....|+.                      .+...++... +-|+|||++++.-
T Consensus       133 ~~fD~V~~d~~~~~~----------------------~~~~~~~~~~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          133 DTLDMVFLDHWKDRY----------------------LPDTLLLEKC-GLLRKGTVLLADN  170 (221)
T ss_dssp             CCCSEEEECSCGGGH----------------------HHHHHHHHHT-TCCCTTCEEEESC
T ss_pred             CceEEEEEcCCcccc----------------------hHHHHHHHhc-cccCCCeEEEEeC
Confidence            789999998877762                      1234556655 8899999998743

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.59  E-value=0.0024  Score=58.92  Aligned_cols=103  Identities=12%  Similarity=0.003  Sum_probs=37.3

Q ss_pred             cCCccccc--cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCC
Q 045960           82 SPGSFYTR--LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDN  159 (300)
Q Consensus        82 vpgSFy~~--l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~  159 (300)
                      +.+.....  -+|++++|+|++...-+|                           .+|..-.+-|+|||++++.....  
T Consensus       172 ~~~d~~~~~~~~~~~~fD~V~~~~~~~~---------------------------~~l~~~~~~LkpgG~lv~~~~~~--  222 (336)
T 2b25_A          172 IHKDISGATEDIKSLTFDAVALDMLNPH---------------------------VTLPVFYPHLKHGGVCAVYVVNI--  222 (336)
T ss_dssp             EESCTTCCC-------EEEEEECSSSTT---------------------------TTHHHHGGGEEEEEEEEEEESSH--
T ss_pred             EECChHHcccccCCCCeeEEEECCCCHH---------------------------HHHHHHHHhcCCCcEEEEEeCCH--
Confidence            34454443  257788999998644333                           14556678899999999776422  


Q ss_pred             CCCCCchHHHHHHHHHHHcCC-Cc-----hhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          160 FHATPGEPMLMVLKDMISEGL-AE-----ESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       160 ~~~~~~~~l~~al~~mv~eG~-i~-----~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                            +.+...+..|...+. +.     +.....+ ..-...+...++.+.++++| |++.+++...
T Consensus       223 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w-~~~~~~~~~g~y~~~l~~aG-F~~v~~~~~~  282 (336)
T 2b25_A          223 ------TQVIELLDGIRTCELALSCEKISEVIVRDW-LVCLAKQKNGILAQKVESKI-NTDVQLDSQE  282 (336)
T ss_dssp             ------HHHHHHHHHHHHHTCCEEEEEEECCCCCCE-EECC---------------------------
T ss_pred             ------HHHHHHHHHHHhcCCCcccceEEEecccce-EEEeecccccchhhhhcccc-cccccccccc
Confidence                  334455555544221 11     1111222 11111222338999999998 8887765543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.58  E-value=0.0094  Score=53.17  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=34.6

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHh-HHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQ-FESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q-~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .+|++++|+|+|+--.++....    . .+...++.+.. ...++..+|+.-++-|+|||++++...
T Consensus       110 ~~~~~~fD~Vv~nPPy~~~~~~----~-~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          110 GLPDEHFHHVIMNPPYNDAGDR----R-TPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             TCCTTCEEEEEECCCC--------------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCCCcCEEEECCCCcCCCCC----C-CcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            3678899999999766664211    1 11111221111 123478899999999999999998764

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=96.57  E-value=0.006  Score=58.23  Aligned_cols=40  Identities=28%  Similarity=0.256  Sum_probs=29.0

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      +..+|+++|-+--+.|-.                   +..+..+|.+|.+=|+|||+|+
T Consensus       147 pe~~DvivsE~~~~~l~~-------------------e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          147 PEQVDAIVSEWMGYGLLH-------------------ESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             SSCEEEEECCCCBTTBTT-------------------TCSHHHHHHHHHHHEEEEEEEE
T ss_pred             CccccEEEeecccccccc-------------------cchhhhHHHHHHhhCCCCceEC
Confidence            468999999433332222                   2237788999999999999987

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.55  E-value=0.0098  Score=48.20  Aligned_cols=43  Identities=12%  Similarity=0.081  Sum_probs=28.0

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      .++|+++++..+|  ..       .+.+.           ..+.+  .+-|+|||++++......
T Consensus       109 ~~~D~i~~~~~~~--~~-------~~~~~-----------~~~~~--~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          109 ERFTVAFMAPPYA--MD-------LAALF-----------GELLA--SGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             CCEEEEEECCCTT--SC-------TTHHH-----------HHHHH--HTCEEEEEEEEEEEETTS
T ss_pred             CceEEEEECCCCc--hh-------HHHHH-----------HHHHh--hcccCCCcEEEEEeCCcc
Confidence            4799999998776  22       11121           11222  577999999999886554

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.55  E-value=0.0058  Score=53.33  Aligned_cols=99  Identities=14%  Similarity=0.164  Sum_probs=54.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...               .|..+|+.-|.-.. .      +......... .+.. .++-  .
T Consensus        73 ~~vLDiG~G~G~~~~~la~~---------------~~~~~v~~vD~~~~-~------~~~a~~~~~~-~~~~-~~v~--~  126 (232)
T 3ntv_A           73 KNILEIGTAIGYSSMQFASI---------------SDDIHVTTIERNET-M------IQYAKQNLAT-YHFE-NQVR--I  126 (232)
T ss_dssp             CEEEEECCSSSHHHHHHHTT---------------CTTCEEEEEECCHH-H------HHHHHHHHHH-TTCT-TTEE--E
T ss_pred             CEEEEEeCchhHHHHHHHHh---------------CCCCEEEEEECCHH-H------HHHHHHHHHH-cCCC-CcEE--E
Confidence            37999999999988765421               12456676664211 0      0000111111 1110 1221  2


Q ss_pred             cCCccccccCC---CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           82 SPGSFYTRLFP---HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        82 vpgSFy~~l~P---~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      +-|.+.. .+|   ++++|+|++..   |...                      +..+|+.-.+-|+|||++++
T Consensus       127 ~~~d~~~-~~~~~~~~~fD~V~~~~---~~~~----------------------~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          127 IEGNALE-QFENVNDKVYDMIFIDA---AKAQ----------------------SKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             EESCGGG-CHHHHTTSCEEEEEEET---TSSS----------------------HHHHHHHHGGGEEEEEEEEE
T ss_pred             EECCHHH-HHHhhccCCccEEEEcC---cHHH----------------------HHHHHHHHHHhcCCCeEEEE
Confidence            2334333 233   68999999653   2121                      45577777889999999987

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=96.54  E-value=0.0099  Score=52.20  Aligned_cols=48  Identities=8%  Similarity=0.026  Sum_probs=32.9

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      +.+++|+|+|+..++-....+..             ....+...+|+.-++-|+|||++++
T Consensus       165 ~~~~fD~Iv~npp~~~~~~~~~~-------------~~~~~~~~~l~~~~~~LkpgG~l~~  212 (250)
T 1o9g_A          165 AGSAPDVVLTDLPYGERTHWEGQ-------------VPGQPVAGLLRSLASALPAHAVIAV  212 (250)
T ss_dssp             TTCCCSEEEEECCGGGSSSSSSC-------------CCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCCceEEEeCCCeecccccccc-------------ccccHHHHHHHHHHHhcCCCcEEEE
Confidence            44589999998766654332210             1124456778877888999999998

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.51  E-value=0.011  Score=52.78  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||++|..++.+...               .|..+|+..|.-.. --.+.      ...... .+.  .+  +..
T Consensus       111 ~~vLDlG~GsG~~~~~la~~---------------~~~~~v~~vD~s~~-~l~~a------~~n~~~-~~~--~~--v~~  163 (276)
T 2b3t_A          111 CRILDLGTGTGAIALALASE---------------RPDCEIIAVDRMPD-AVSLA------QRNAQH-LAI--KN--IHI  163 (276)
T ss_dssp             CEEEEETCTTSHHHHHHHHH---------------CTTSEEEEECSSHH-HHHHH------HHHHHH-HTC--CS--EEE
T ss_pred             CEEEEecCCccHHHHHHHHh---------------CCCCEEEEEECCHH-HHHHH------HHHHHH-cCC--Cc--eEE
Confidence            47999999999988755421               12357777774211 00011      011111 111  12  223


Q ss_pred             cCCccccccCCCCcccEEEeccccccccC----------CCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSR----------MPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~----------vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      +-+.+.. .+|++++|+++|+...+|...          .|.......       ...-.++..+|+.-.+-|+|||+++
T Consensus       164 ~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~-------~~g~~~~~~~l~~~~~~LkpgG~l~  235 (276)
T 2b3t_A          164 LQSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAA-------DSGMADIVHIIEQSRNALVSGGFLL  235 (276)
T ss_dssp             ECCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCH-------HHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEcchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCC-------CcHHHHHHHHHHHHHHhcCCCCEEE
Confidence            4455554 356788999999977776433          121100000       0112456788888889999999999


Q ss_pred             EEE
Q 045960          152 LTL  154 (300)
Q Consensus       152 l~~  154 (300)
                      +..
T Consensus       236 ~~~  238 (276)
T 2b3t_A          236 LEH  238 (276)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            874

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=96.50  E-value=0.0067  Score=51.81  Aligned_cols=44  Identities=11%  Similarity=0.144  Sum_probs=28.7

Q ss_pred             CCCc-ccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHH--HHhhccCceeEEEEeecC
Q 045960           92 PHNF-LDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFR--SEELKSQGRMVLTLLYND  158 (300)
Q Consensus        92 P~~s-v~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~R--a~EL~~GG~~vl~~~g~~  158 (300)
                      ++++ +|+++++..+|+  .                     +...+|+.-  .+=|+|||++++......
T Consensus       121 ~~~~~fD~I~~~~~~~~--~---------------------~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          121 QNQPHFDVVFLDPPFHF--N---------------------LAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CSSCCEEEEEECCCSSS--C---------------------HHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             ccCCCCCEEEECCCCCC--c---------------------cHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            4678 999999877663  1                     112233322  445999999998876443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.50  E-value=0.013  Score=54.33  Aligned_cols=39  Identities=5%  Similarity=0.016  Sum_probs=30.4

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +|++++|+|++...      +|.                   ...+|+.-.+-|+|||++++..
T Consensus       184 l~d~~FDvV~~~a~------~~d-------------------~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          184 IDGLEFDVLMVAAL------AEP-------------------KRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             GGGCCCSEEEECTT------CSC-------------------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCCCcCEEEECCC------ccC-------------------HHHHHHHHHHHcCCCcEEEEEc
Confidence            47899999998654      332                   4667777889999999999865

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.48  E-value=0.0022  Score=56.39  Aligned_cols=46  Identities=13%  Similarity=0.068  Sum_probs=29.7

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      -+|++++|.++.-........                 ....|...||+.-++=|||||+|+.
T Consensus       123 ~~~~~~FD~i~~D~~~~~~~~-----------------~~~~~~~~~~~e~~rvLkPGG~l~f  168 (236)
T 3orh_A          123 TLPDGHFDGILYDTYPLSEET-----------------WHTHQFNFIKNHAFRLLKPGGVLTY  168 (236)
T ss_dssp             GSCTTCEEEEEECCCCCBGGG-----------------TTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred             cccccCCceEEEeeeecccch-----------------hhhcchhhhhhhhhheeCCCCEEEE
Confidence            478889998864222111000                 0123567888888999999999865

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.47  E-value=0.0042  Score=57.03  Aligned_cols=101  Identities=15%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+....           +   ...+|+..|+-.+ .-...      ...... .+  ..+  +..+
T Consensus        78 ~VLDiGcG~G~~~~~la~~~-----------~---~~~~v~gvD~s~~-~~~~a------~~~~~~-~g--~~~--v~~~  131 (317)
T 1dl5_A           78 RVLEIGGGTGYNAAVMSRVV-----------G---EKGLVVSVEYSRK-ICEIA------KRNVER-LG--IEN--VIFV  131 (317)
T ss_dssp             EEEEECCTTSHHHHHHHHHH-----------C---TTCEEEEEESCHH-HHHHH------HHHHHH-TT--CCS--EEEE
T ss_pred             EEEEecCCchHHHHHHHHhc-----------C---CCCEEEEEECCHH-HHHHH------HHHHHH-cC--CCC--eEEE
Confidence            79999999998776554321           1   1245666663210 00000      111111 11  123  2223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      -+.+..-+.+.+++|+|++...+|++.+                            .-.+-|+|||++++.+...
T Consensus       132 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~----------------------------~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          132 CGDGYYGVPEFSPYDVIFVTVGVDEVPE----------------------------TWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             ESCGGGCCGGGCCEEEEEECSBBSCCCH----------------------------HHHHHEEEEEEEEEEBCBG
T ss_pred             ECChhhccccCCCeEEEEEcCCHHHHHH----------------------------HHHHhcCCCcEEEEEECCC
Confidence            4555554556788999999999998431                            1245799999999987543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.45  E-value=0.00076  Score=56.87  Aligned_cols=123  Identities=12%  Similarity=-0.010  Sum_probs=58.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...               .|..+|+.-|+-..=-...=+.+...        +     .-+..
T Consensus        32 ~~vLDiG~G~G~~~~~l~~~---------------~~~~~v~~vD~~~~~~~~a~~~~~~~--------~-----~~~~~   83 (215)
T 4dzr_A           32 TRVIDVGTGSGCIAVSIALA---------------CPGVSVTAVDLSMDALAVARRNAERF--------G-----AVVDW   83 (215)
T ss_dssp             EEEEEEESSBCHHHHHHHHH---------------CTTEEEEEEECC--------------------------------C
T ss_pred             CEEEEecCCHhHHHHHHHHh---------------CCCCeEEEEECCHHHHHHHHHHHHHh--------C-----CceEE
Confidence            47999999999887765432               12356777775322111111111100        0     01122


Q ss_pred             cCCccccccCCC-----CcccEEEeccccccccCC---CCCCCC--CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           82 SPGSFYTRLFPH-----NFLDFVYSSYALHWLSRM---PKGQGN--ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        82 vpgSFy~~l~P~-----~sv~~~~Ss~alHWLS~v---P~~~~n--~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      +-+.+.. .+|+     +++|+++++-.+|+....   +..+..  +.... .-.......+..||+.-.+-|+|||+++
T Consensus        84 ~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~  161 (215)
T 4dzr_A           84 AAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLAL-DGGEDGLQFYRRMAALPPYVLARGRAGV  161 (215)
T ss_dssp             CHHHHHH-HHHHHHHTTCCBSEEEECCCCCC-------------------------CTTHHHHHHHTCCGGGBCSSSEEE
T ss_pred             EEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccc-cCCCcHHHHHHHHHHHHHHHhcCCCeEE
Confidence            3344444 4554     899999998777664432   111110  00000 0001112234788888889999999944


Q ss_pred             EEE
Q 045960          152 LTL  154 (300)
Q Consensus       152 l~~  154 (300)
                      +..
T Consensus       162 ~~~  164 (215)
T 4dzr_A          162 FLE  164 (215)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.45  E-value=0.0076  Score=52.90  Aligned_cols=98  Identities=11%  Similarity=0.011  Sum_probs=43.4

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHHH
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVLK  173 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al~  173 (300)
                      +++|+++|+-..|+.......+. ++.+..      ..+...++..-++-|+|||.+.+.-           ..+..+..
T Consensus       139 ~~fD~i~~npp~~~~~~~~~~~~-~~~~~~------~~~~~~l~~~~~~~LkpgG~l~~~~-----------~~~~~~~~  200 (254)
T 2h00_A          139 IIYDFCMCNPPFFANQLEAKGVN-SRNPRR------PPPSSVNTGGITEIMAEGGELEFVK-----------RIIHDSLQ  200 (254)
T ss_dssp             CCBSEEEECCCCC--------------------------------CTTTTHHHHTHHHHHH-----------HHHHHHHH
T ss_pred             CcccEEEECCCCccCcchhcccc-cccccc------cCCHHHHhhhHHHHEecCCEEEEEH-----------HHHHHHHh
Confidence            68999999977776441000000 011110      1123345566677899999875431           12222222


Q ss_pred             HHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          174 DMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       174 ~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      -+...|.+.      +  ..-...+.+++.+++++.| |+..+..
T Consensus       201 ~l~~~g~~~------~--~~~~~~~~~~~~~~l~~~G-f~~v~~~  236 (254)
T 2h00_A          201 LKKRLRWYS------C--MLGKKCSLAPLKEELRIQG-VPKVTYT  236 (254)
T ss_dssp             HGGGBSCEE------E--EESSTTSHHHHHHHHHHTT-CSEEEEE
T ss_pred             cccceEEEE------E--CCCChhHHHHHHHHHHHcC-CCceEEE
Confidence            121222111      1  0112345689999999998 7654443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.37  E-value=0.0035  Score=53.98  Aligned_cols=107  Identities=11%  Similarity=0.091  Sum_probs=58.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCC---CCCcee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGH---EFGSCF   78 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~---~~~~~f   78 (300)
                      -+|.|+||++|..++.+....    .      ....|..+|+.-|.-.. .-...+      ...... +.   ...++-
T Consensus        82 ~~VLdiG~G~G~~~~~la~~~----~------~~~~~~~~v~~vD~~~~-~~~~a~------~~~~~~-~~~~~~~~~v~  143 (227)
T 2pbf_A           82 SRAIDVGSGSGYLTVCMAIKM----N------VLENKNSYVIGLERVKD-LVNFSL------ENIKRD-KPELLKIDNFK  143 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHT----T------TTTCTTCEEEEEESCHH-HHHHHH------HHHHHH-CGGGGSSTTEE
T ss_pred             CEEEEECCCCCHHHHHHHHHh----c------ccCCCCCEEEEEeCCHH-HHHHHH------HHHHHc-CccccccCCEE
Confidence            379999999998777554311    0      00123457777774211 111110      111111 10   001221


Q ss_pred             eeecCCcccccc----CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           79 VAASPGSFYTRL----FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        79 ~~~vpgSFy~~l----~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                        .+-+....-.    .+.+++|++++..++|++   +.                         .-.+-|+|||++++.+
T Consensus       144 --~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~---~~-------------------------~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          144 --IIHKNIYQVNEEEKKELGLFDAIHVGASASEL---PE-------------------------ILVDLLAENGKLIIPI  193 (227)
T ss_dssp             --EEECCGGGCCHHHHHHHCCEEEEEECSBBSSC---CH-------------------------HHHHHEEEEEEEEEEE
T ss_pred             --EEECChHhcccccCccCCCcCEEEECCchHHH---HH-------------------------HHHHhcCCCcEEEEEE
Confidence              2234444433    556789999999999973   31                         1346799999999998


Q ss_pred             ee
Q 045960          155 LY  156 (300)
Q Consensus       155 ~g  156 (300)
                      ..
T Consensus       194 ~~  195 (227)
T 2pbf_A          194 EE  195 (227)
T ss_dssp             EE
T ss_pred             cc
Confidence            75

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.34  E-value=0.0077  Score=52.63  Aligned_cols=101  Identities=12%  Similarity=0.044  Sum_probs=54.3

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+...+              ++.-+|+..|.-.. .-...+      +.... .+....++  ..+
T Consensus        59 ~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~-~~~~a~------~~~~~-~g~~~~~i--~~~  114 (221)
T 3dr5_A           59 GAIAITPAAGLVGLYILNGL--------------ADNTTLTCIDPESE-HQRQAK------ALFRE-AGYSPSRV--RFL  114 (221)
T ss_dssp             EEEEESTTHHHHHHHHHHHS--------------CTTSEEEEECSCHH-HHHHHH------HHHHH-TTCCGGGE--EEE
T ss_pred             CEEEEcCCchHHHHHHHHhC--------------CCCCEEEEEECCHH-HHHHHH------HHHHH-cCCCcCcE--EEE
Confidence            79999999999998665421              12356666664211 111111      11111 11100112  223


Q ss_pred             CCcccccc--CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           83 PGSFYTRL--FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        83 pgSFy~~l--~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      -|...+-+  ++++++|++|+....+                         ++..+|+.-.+=|+|||++++
T Consensus       115 ~gda~~~l~~~~~~~fD~V~~d~~~~-------------------------~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          115 LSRPLDVMSRLANDSYQLVFGQVSPM-------------------------DLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             CSCHHHHGGGSCTTCEEEEEECCCTT-------------------------THHHHHHHHHHHEEEEEEEEE
T ss_pred             EcCHHHHHHHhcCCCcCeEEEcCcHH-------------------------HHHHHHHHHHHHcCCCcEEEE
Confidence            33333322  3478999999864211                         134466666788999999987

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=96.34  E-value=0.023  Score=46.22  Aligned_cols=72  Identities=13%  Similarity=0.058  Sum_probs=39.7

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+..                 +..+|+..|.-.. .-...      ...... .+.  .+  +..+
T Consensus        38 ~vLdiG~G~G~~~~~l~~-----------------~~~~v~~vD~~~~-~~~~a------~~~~~~-~~~--~~--~~~~   88 (183)
T 2yxd_A           38 VVVDVGCGSGGMTVEIAK-----------------RCKFVYAIDYLDG-AIEVT------KQNLAK-FNI--KN--CQII   88 (183)
T ss_dssp             EEEEESCCCSHHHHHHHT-----------------TSSEEEEEECSHH-HHHHH------HHHHHH-TTC--CS--EEEE
T ss_pred             EEEEeCCCCCHHHHHHHh-----------------cCCeEEEEeCCHH-HHHHH------HHHHHH-cCC--Cc--EEEE
Confidence            799999999998876542                 1246666663211 00000      111111 111  12  2224


Q ss_pred             CCccccccCCCCcccEEEeccc
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYA  104 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~a  104 (300)
                      -+.+.. .+|++++|+++++..
T Consensus        89 ~~d~~~-~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           89 KGRAED-VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             ESCHHH-HGGGCCCSEEEECSC
T ss_pred             ECCccc-cccCCCCcEEEECCc
Confidence            455555 567789999999877

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.32  E-value=0.0028  Score=57.43  Aligned_cols=50  Identities=14%  Similarity=0.174  Sum_probs=32.6

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCc--eeEEEEee
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQG--RMVLTLLY  156 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG--~~vl~~~g  156 (300)
                      +|++++|+|+|..+ |....        +.+..      .+.+ ..|+.-.+-|+|||  .+++....
T Consensus       136 l~~~~fD~V~sd~~-~~~~~--------~~~d~------~~~l-~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          136 LPVERTDVIMCDVG-ESSPK--------WSVES------ERTI-KILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             SCCCCCSEEEECCC-CCCSC--------HHHHH------HHHH-HHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCCCCCcEEEEeCc-ccCCc--------cchhH------HHHH-HHHHHHHHHhccCCCeEEEEEeCC
Confidence            67889999999888 65222        11100      0011 26777778899999  88886654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.26  E-value=0.0069  Score=54.69  Aligned_cols=116  Identities=14%  Similarity=0.072  Sum_probs=63.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCC---CCceee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHE---FGSCFV   79 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~---~~~~f~   79 (300)
                      +|.|+||++|..++.+..            .+    .-+|+..|+++.+.-.+.+.--.. + .....+..   ..++-+
T Consensus        82 ~vLDlG~G~G~~~~~~a~------------~~----~~~v~~~D~s~~~~~~~a~~n~~~-N-~~~~~~~~~~~~~~v~~  143 (281)
T 3bzb_A           82 TVCELGAGAGLVSIVAFL------------AG----ADQVVATDYPDPEILNSLESNIRE-H-TANSCSSETVKRASPKV  143 (281)
T ss_dssp             EEEETTCTTSHHHHHHHH------------TT----CSEEEEEECSCHHHHHHHHHHHHT-T-CC----------CCCEE
T ss_pred             eEEEecccccHHHHHHHH------------cC----CCEEEEEeCCCHHHHHHHHHHHHH-h-hhhhcccccCCCCCeEE
Confidence            799999999988764321            11    137888887544333333211000 0 00000000   012222


Q ss_pred             e-ecCCccccccC---CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhc---c--Ccee
Q 045960           80 A-ASPGSFYTRLF---PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELK---S--QGRM  150 (300)
Q Consensus        80 ~-~vpgSFy~~l~---P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~---~--GG~~  150 (300)
                      . ..-|.....+.   +.+++|+|+++.++|+...                      ...+|+.-.+-|+   |  ||++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~----------------------~~~ll~~l~~~Lk~~~p~~gG~l  201 (281)
T 3bzb_A          144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQA----------------------HDALLRSVKMLLALPANDPTAVA  201 (281)
T ss_dssp             EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGG----------------------HHHHHHHHHHHBCCTTTCTTCEE
T ss_pred             EEecCCCccHHHHhhccCCCCCEEEEeCcccChHH----------------------HHHHHHHHHHHhcccCCCCCCEE
Confidence            1 12222223333   6789999999999998433                      5566777777899   9  9999


Q ss_pred             EEEEeecC
Q 045960          151 VLTLLYND  158 (300)
Q Consensus       151 vl~~~g~~  158 (300)
                      ++.+..+.
T Consensus       202 ~v~~~~~~  209 (281)
T 3bzb_A          202 LVTFTHHR  209 (281)
T ss_dssp             EEEECC--
T ss_pred             EEEEEeee
Confidence            88876543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=96.22  E-value=0.01  Score=55.38  Aligned_cols=103  Identities=15%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+..        .        +..+|+.-|..  ..-...+      +.... .+.. .++-  .
T Consensus        52 ~~VLDiGcGtG~ls~~la~--------~--------g~~~V~~vD~s--~~~~~a~------~~~~~-~~l~-~~v~--~  103 (348)
T 2y1w_A           52 KIVLDVGCGSGILSFFAAQ--------A--------GARKIYAVEAS--TMAQHAE------VLVKS-NNLT-DRIV--V  103 (348)
T ss_dssp             CEEEEETCTTSHHHHHHHH--------T--------TCSEEEEEECS--THHHHHH------HHHHH-TTCT-TTEE--E
T ss_pred             CEEEEcCCCccHHHHHHHh--------C--------CCCEEEEECCH--HHHHHHH------HHHHH-cCCC-CcEE--E
Confidence            3799999999987765432        1        12478888863  2222221      11111 1110 1221  1


Q ss_pred             cCCccccccCCCCcccEEEeccccc-cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALH-WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alH-WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +.+.+-.--+| +++|+++|...+| |...                     ++...|..-.+-|+|||++++..
T Consensus       104 ~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~---------------------~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          104 IPGKVEEVSLP-EQVDIIISEPMGYMLFNE---------------------RMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             EESCTTTCCCS-SCEEEEEECCCBTTBTTT---------------------SHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EEcchhhCCCC-CceeEEEEeCchhcCChH---------------------HHHHHHHHHHhhcCCCeEEEEec
Confidence            23333322234 6899999997654 4221                     12223333348899999998654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.21  E-value=0.02  Score=49.80  Aligned_cols=42  Identities=12%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             cccCCC--CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           88 TRLFPH--NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        88 ~~l~P~--~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      .+-||.  +++|++++....   .                      ++..+|+.-.+-|+|||++++.-
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~---~----------------------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADK---E----------------------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCG---G----------------------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccCCCCCcCEEEEeCCH---H----------------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence            345776  899999987431   1                      13456677778899999999864

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.21  E-value=0.0054  Score=54.17  Aligned_cols=39  Identities=15%  Similarity=0.107  Sum_probs=28.9

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      +|++++|+|+++.+.+.                             |+.-.+-|+|||++++...+..
T Consensus       144 ~~~~~fD~v~~~~~~~~-----------------------------l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          144 FSDTSMDAIIRIYAPCK-----------------------------AEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             BCTTCEEEEEEESCCCC-----------------------------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCCceeEEEEeCChhh-----------------------------HHHHHHhcCCCcEEEEEEcCHH
Confidence            67889999998755222                             3335567999999999987654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.17  E-value=0.00055  Score=59.70  Aligned_cols=80  Identities=14%  Similarity=0.038  Sum_probs=44.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+...            +     .+|+..|+-..=    .+..   ...... .+.. .++  ..
T Consensus        80 ~~vLD~gcG~G~~~~~la~~------------~-----~~v~~vD~s~~~----~~~a---~~~~~~-~~~~-~~~--~~  131 (241)
T 3gdh_A           80 DVVVDAFCGVGGNTIQFALT------------G-----MRVIAIDIDPVK----IALA---RNNAEV-YGIA-DKI--EF  131 (241)
T ss_dssp             SEEEETTCTTSHHHHHHHHT------------T-----CEEEEEESCHHH----HHHH---HHHHHH-TTCG-GGE--EE
T ss_pred             CEEEECccccCHHHHHHHHc------------C-----CEEEEEECCHHH----HHHH---HHHHHH-cCCC-cCe--EE
Confidence            37999999999999876531            1     455655532110    0000   011111 1100 111  22


Q ss_pred             cCCccccccCCCCcccEEEeccccccccC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSR  110 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~  110 (300)
                      +-+.+..-. |++++|+|+++..+||...
T Consensus       132 ~~~d~~~~~-~~~~~D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          132 ICGDFLLLA-SFLKADVVFLSPPWGGPDY  159 (241)
T ss_dssp             EESCHHHHG-GGCCCSEEEECCCCSSGGG
T ss_pred             EECChHHhc-ccCCCCEEEECCCcCCcch
Confidence            334444433 7789999999999999765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.17  E-value=0.0089  Score=53.40  Aligned_cols=100  Identities=18%  Similarity=0.218  Sum_probs=56.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+.+.+           +   |..+|+..|.-.. .-...+      ..... .+.. .+  +..+
T Consensus       115 ~VLDiG~G~G~~~~~la~~~-----------~---~~~~v~~vD~s~~-~~~~a~------~~~~~-~~~~-~~--v~~~  169 (277)
T 1o54_A          115 RIIDTGVGSGAMCAVLARAV-----------G---SSGKVFAYEKREE-FAKLAE------SNLTK-WGLI-ER--VTIK  169 (277)
T ss_dssp             EEEEECCTTSHHHHHHHHHT-----------T---TTCEEEEECCCHH-HHHHHH------HHHHH-TTCG-GG--EEEE
T ss_pred             EEEEECCcCCHHHHHHHHHh-----------C---CCcEEEEEECCHH-HHHHHH------HHHHH-cCCC-CC--EEEE
Confidence            79999999998887654321           1   2357777774211 111111      11111 1100 12  2234


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+.+... +|++++|++++.        .|.    +               ..+|+.-.+-|+|||++++...
T Consensus       170 ~~d~~~~-~~~~~~D~V~~~--------~~~----~---------------~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          170 VRDISEG-FDEKDVDALFLD--------VPD----P---------------WNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CCCGGGC-CSCCSEEEEEEC--------CSC----G---------------GGTHHHHHHHEEEEEEEEEEES
T ss_pred             ECCHHHc-ccCCccCEEEEC--------CcC----H---------------HHHHHHHHHHcCCCCEEEEEeC
Confidence            4555544 788899999983        232    1               2445556678999999998874

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=96.17  E-value=0.011  Score=50.47  Aligned_cols=17  Identities=24%  Similarity=0.104  Sum_probs=14.7

Q ss_pred             EEEeeCCCCCcccHHHH
Q 045960            3 RFADLGCSSGPNALLPT   19 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~   19 (300)
                      +|.|+||++|..++.++
T Consensus        57 ~vLDlgcG~G~~~~~l~   73 (202)
T 2fpo_A           57 QCLDCFAGSGALGLEAL   73 (202)
T ss_dssp             EEEETTCTTCHHHHHHH
T ss_pred             eEEEeCCCcCHHHHHHH
Confidence            79999999999888654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.16  E-value=0.0056  Score=52.92  Aligned_cols=107  Identities=16%  Similarity=0.065  Sum_probs=57.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCC---CCCcee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGH---EFGSCF   78 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~---~~~~~f   78 (300)
                      -+|.|+||++|..+..+....    ..    .+ ..+.-+|+..|.-.. .-...+      ...... +.   ...++-
T Consensus        86 ~~VLdiG~G~G~~~~~la~~~----~~----~~-~~~~~~v~~vD~~~~-~~~~a~------~~~~~~-~~~~~~~~~v~  148 (227)
T 1r18_A           86 ARILDVGSGSGYLTACFYRYI----KA----KG-VDADTRIVGIEHQAE-LVRRSK------ANLNTD-DRSMLDSGQLL  148 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHH----HH----SC-CCTTCEEEEEESCHH-HHHHHH------HHHHHH-HHHHHHHTSEE
T ss_pred             CEEEEECCCccHHHHHHHHhc----cc----cc-CCccCEEEEEEcCHH-HHHHHH------HHHHhc-CccccCCCceE
Confidence            379999999999888654321    11    01 112346666664211 111111      111000 00   001221


Q ss_pred             eeecCCccccccCCC-CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           79 VAASPGSFYTRLFPH-NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        79 ~~~vpgSFy~~l~P~-~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                        .+-+.... -+|. +++|++++..++||+   |.                         .-.+-|+|||+|++.+..
T Consensus       149 --~~~~d~~~-~~~~~~~fD~I~~~~~~~~~---~~-------------------------~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          149 --IVEGDGRK-GYPPNAPYNAIHVGAAAPDT---PT-------------------------ELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             --EEESCGGG-CCGGGCSEEEEEECSCBSSC---CH-------------------------HHHHTEEEEEEEEEEESC
T ss_pred             --EEECCccc-CCCcCCCccEEEECCchHHH---HH-------------------------HHHHHhcCCCEEEEEEec
Confidence              12234444 3454 789999999999983   31                         134569999999999864

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.13  E-value=0.013  Score=51.99  Aligned_cols=129  Identities=12%  Similarity=0.081  Sum_probs=70.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...+           +   |..+|+.-|.-. +.-...+      .......+.-..+  +..+
T Consensus       102 ~vLdiG~G~G~~~~~l~~~~-----------~---~~~~v~~vD~~~-~~~~~a~------~~~~~~~g~~~~~--v~~~  158 (280)
T 1i9g_A          102 RVLEAGAGSGALTLSLLRAV-----------G---PAGQVISYEQRA-DHAEHAR------RNVSGCYGQPPDN--WRLV  158 (280)
T ss_dssp             EEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEECSCH-HHHHHHH------HHHHHHHTSCCTT--EEEE
T ss_pred             EEEEEcccccHHHHHHHHHh-----------C---CCCEEEEEeCCH-HHHHHHH------HHHHHhcCCCCCc--EEEE
Confidence            79999999999887554321           1   235667666411 1111111      1111100100012  2234


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+.+....+|++++|++++..        |.    +               ..+|+.-.+-|+|||++++.....     
T Consensus       159 ~~d~~~~~~~~~~~D~v~~~~--------~~----~---------------~~~l~~~~~~L~pgG~l~~~~~~~-----  206 (280)
T 1i9g_A          159 VSDLADSELPDGSVDRAVLDM--------LA----P---------------WEVLDAVSRLLVAGGVLMVYVATV-----  206 (280)
T ss_dssp             CSCGGGCCCCTTCEEEEEEES--------SC----G---------------GGGHHHHHHHEEEEEEEEEEESSH-----
T ss_pred             ECchHhcCCCCCceeEEEECC--------cC----H---------------HHHHHHHHHhCCCCCEEEEEeCCH-----
Confidence            566666667889999999832        21    1               135666678899999999987533     


Q ss_pred             CCchHHHHHHHHHHH-cCCCchhhhccc
Q 045960          163 TPGEPMLMVLKDMIS-EGLAEESKVKSF  189 (300)
Q Consensus       163 ~~~~~l~~al~~mv~-eG~i~~e~~d~f  189 (300)
                         +.+.+.+..|.. .|....+.++.+
T Consensus       207 ---~~~~~~~~~l~~~~~f~~~~~~~~~  231 (280)
T 1i9g_A          207 ---TQLSRIVEALRAKQCWTEPRAWETL  231 (280)
T ss_dssp             ---HHHHHHHHHHHHHSSBCCCEEECCC
T ss_pred             ---HHHHHHHHHHHhcCCcCCcEEEEEe
Confidence               334455555554 455444444443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.13  E-value=0.1  Score=44.64  Aligned_cols=20  Identities=15%  Similarity=0.180  Sum_probs=16.5

Q ss_pred             HHHHHHHHhhccCceeEEEE
Q 045960          135 TFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       135 ~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      .+|+.-.+-|+|||++++.+
T Consensus       159 ~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          159 ILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEEE
Confidence            45666788999999999984

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.11  E-value=0.018  Score=50.15  Aligned_cols=101  Identities=14%  Similarity=-0.039  Sum_probs=56.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...+           +   |..+|+.-|.-.. .-...+      .......+.  .++-  .+
T Consensus        99 ~vLdiG~G~G~~~~~l~~~~-----------~---~~~~v~~~D~~~~-~~~~a~------~~~~~~~g~--~~v~--~~  153 (258)
T 2pwy_A           99 RVLEAGTGSGGLTLFLARAV-----------G---EKGLVESYEARPH-HLAQAE------RNVRAFWQV--ENVR--FH  153 (258)
T ss_dssp             EEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEEESCHH-HHHHHH------HHHHHHCCC--CCEE--EE
T ss_pred             EEEEECCCcCHHHHHHHHHh-----------C---CCCEEEEEeCCHH-HHHHHH------HHHHHhcCC--CCEE--EE
Confidence            79999999999887654321           1   2346666664211 111110      111111011  2222  23


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .+++..--+|++++|++++.    +    |.                   ...+|+.-.+-|+|||++++...
T Consensus       154 ~~d~~~~~~~~~~~D~v~~~----~----~~-------------------~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          154 LGKLEEAELEEAAYDGVALD----L----ME-------------------PWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             ESCGGGCCCCTTCEEEEEEE----S----SC-------------------GGGGHHHHHHHEEEEEEEEEEES
T ss_pred             ECchhhcCCCCCCcCEEEEC----C----cC-------------------HHHHHHHHHHhCCCCCEEEEEeC
Confidence            34555433788899999972    2    32                   12456666788999999998773

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.08  E-value=0.0034  Score=57.20  Aligned_cols=50  Identities=18%  Similarity=0.109  Sum_probs=32.7

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCc--eeEEEEee
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQG--RMVLTLLY  156 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG--~~vl~~~g  156 (300)
                      +|++++|+|+|..+ |+...        +.+. .     .+.+ ..|+.-.+-|+|||  .+++....
T Consensus       144 l~~~~fD~Vvsd~~-~~~~~--------~~~d-~-----~~~l-~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          144 MEPFQADTVLCDIG-ESNPT--------AAVE-A-----SRTL-TVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCCCCCSEEEECCC-CCCSC--------HHHH-H-----HHHH-HHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CCCCCcCEEEECCC-cCCCc--------hhhh-H-----HHHH-HHHHHHHHHhccCCCcEEEEEeCC
Confidence            67889999999988 66322        1110 0     0011 26777778899999  99886654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.07  E-value=0.013  Score=53.78  Aligned_cols=43  Identities=26%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHH--HHHHHHHHHhhccCceeEEEE
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDF--STFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~--~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +++++|+|++....++   .|.                 ..+  ..||+.-.+-|+|||+|++..
T Consensus       166 ~~~~fDvIi~d~~~~~---~~~-----------------~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPA---GPA-----------------SKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             CTTCEEEEEEECC-----------------------------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCceeEEEECCCCcc---ccc-----------------hhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            6789999999887776   221                 011  467777888999999999885

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=96.06  E-value=0.018  Score=49.80  Aligned_cols=99  Identities=13%  Similarity=0.152  Sum_probs=55.7

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC---chHHHhhcChhhHHHHhhhcCCCCCceee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRS---DFNTVFKSLPSFYERLRTEKGHEFGSCFV   79 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~N---DFn~Lf~~l~~~~~~~~~~~~~~~~~~f~   79 (300)
                      +|.|+||++|..++.+.+..           +   |.-+|+.-|+-..   +.....+           ..    .++- 
T Consensus        80 ~vLDlG~G~G~~~~~la~~~-----------g---~~~~v~gvD~s~~~i~~~~~~a~-----------~~----~~v~-  129 (233)
T 2ipx_A           80 KVLYLGAASGTTVSHVSDIV-----------G---PDGLVYAVEFSHRSGRDLINLAK-----------KR----TNII-  129 (233)
T ss_dssp             EEEEECCTTSHHHHHHHHHH-----------C---TTCEEEEECCCHHHHHHHHHHHH-----------HC----TTEE-
T ss_pred             EEEEEcccCCHHHHHHHHHh-----------C---CCcEEEEEECCHHHHHHHHHHhh-----------cc----CCeE-
Confidence            79999999999887665431           1   2245666664321   1111111           00    1221 


Q ss_pred             eecCCccccc---cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           80 AASPGSFYTR---LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        80 ~~vpgSFy~~---l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                       .+-+.+...   -++.+++|++++..+      .|.                  ....++..-.+-|+|||++++.+..
T Consensus       130 -~~~~d~~~~~~~~~~~~~~D~V~~~~~------~~~------------------~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          130 -PVIEDARHPHKYRMLIAMVDVIFADVA------QPD------------------QTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             -EECSCTTCGGGGGGGCCCEEEEEECCC------CTT------------------HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             -EEEcccCChhhhcccCCcEEEEEEcCC------Ccc------------------HHHHHHHHHHHHcCCCeEEEEEEcc
Confidence             123343331   135678999999554      111                  1234566677889999999997653

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.00  E-value=0.025  Score=52.67  Aligned_cols=49  Identities=14%  Similarity=0.091  Sum_probs=35.3

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      +|++++|+|++....||-  .|..+.                -..|++.-.+-|+|||+|+++....
T Consensus       155 ~~~~~fDvIi~D~~~~~~--~~~~L~----------------t~efl~~~~r~LkpgGvlv~~~~~~  203 (317)
T 3gjy_A          155 FTPASRDVIIRDVFAGAI--TPQNFT----------------TVEFFEHCHRGLAPGGLYVANCGDH  203 (317)
T ss_dssp             CCTTCEEEEEECCSTTSC--CCGGGS----------------BHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             ccCCCCCEEEECCCCccc--cchhhh----------------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence            367889999998877762  232110                1467777889999999999998643

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=95.98  E-value=0.023  Score=49.13  Aligned_cols=36  Identities=14%  Similarity=0.308  Sum_probs=28.4

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      ++++|+|++....+                         +...+|+.-.+-|+|||++++.
T Consensus       124 ~~~fD~I~~~~~~~-------------------------~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          124 YPLFDVLFIDAAKG-------------------------QYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             SCCEEEEEEEGGGS-------------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCccEEEECCCHH-------------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence            57899999876543                         2466777778899999999886

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=95.98  E-value=0.0036  Score=54.73  Aligned_cols=102  Identities=13%  Similarity=0.024  Sum_probs=58.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||+.|+.++..+.               ..|..+|.-.|.     |.-.-.+-.  ... ...|.. .++-+  
T Consensus        51 ~~VLDlGCG~GplAl~l~~---------------~~p~a~~~A~Di-----~~~~leiar--~~~-~~~g~~-~~v~~--  104 (200)
T 3fzg_A           51 SSILDFGCGFNPLALYQWN---------------ENEKIIYHAYDI-----DRAEIAFLS--SII-GKLKTT-IKYRF--  104 (200)
T ss_dssp             SEEEEETCTTHHHHHHHHC---------------SSCCCEEEEECS-----CHHHHHHHH--HHH-HHSCCS-SEEEE--
T ss_pred             CeEEEecCCCCHHHHHHHh---------------cCCCCEEEEEeC-----CHHHHHHHH--HHH-HhcCCC-ccEEE--
Confidence            3799999999999986532               234567777763     221111110  111 111211 12332  


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                        ...-.. .|+.++|+|.++..||-|.+.+.                      -+..-.+.|+|||.+ +++.
T Consensus       105 --~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~----------------------al~~v~~~L~pggvf-ISfp  152 (200)
T 3fzg_A          105 --LNKESD-VYKGTYDVVFLLKMLPVLKQQDV----------------------NILDFLQLFHTQNFV-ISFP  152 (200)
T ss_dssp             --ECCHHH-HTTSEEEEEEEETCHHHHHHTTC----------------------CHHHHHHTCEEEEEE-EEEE
T ss_pred             --eccccc-CCCCCcChhhHhhHHHhhhhhHH----------------------HHHHHHHHhCCCCEE-EEeC
Confidence              222223 68889999999999999954222                      122367889999876 5665

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.96  E-value=0.014  Score=49.68  Aligned_cols=51  Identities=12%  Similarity=0.008  Sum_probs=31.7

Q ss_pred             CcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           94 NFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +++|+|+|..+..+.-.        .....   ..........|+.-.+-|+|||+|++.+.
T Consensus        90 ~~~D~Vlsd~~~~~~g~--------~~~d~---~~~~~l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGI--------PSRDH---AVSYQIGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             SSEEEEEECCCCCCCSC--------HHHHH---HHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcceEEecCCCcCCCCC--------cccCH---HHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            38999999875443111        11110   11223345677777788999999998775

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=95.96  E-value=0.029  Score=49.44  Aligned_cols=105  Identities=11%  Similarity=0.078  Sum_probs=54.3

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCce-eee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSC-FVA   80 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~-f~~   80 (300)
                      -+|.|+||++|..++.+...              -++..+|+.-|+-.. .-...      ...... .+.. .++ +..
T Consensus        65 ~~VLdiG~G~G~~~~~la~~--------------~~~~~~v~~vD~s~~-~~~~a------~~~~~~-~g~~-~~v~~~~  121 (248)
T 3tfw_A           65 KRILEIGTLGGYSTIWMARE--------------LPADGQLLTLEADAH-HAQVA------RENLQL-AGVD-QRVTLRE  121 (248)
T ss_dssp             SEEEEECCTTSHHHHHHHTT--------------SCTTCEEEEEECCHH-HHHHH------HHHHHH-TTCT-TTEEEEE
T ss_pred             CEEEEecCCchHHHHHHHHh--------------CCCCCEEEEEECCHH-HHHHH------HHHHHH-cCCC-CcEEEEE
Confidence            37999999999998855421              112466777775211 00000      011111 1110 122 222


Q ss_pred             ecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           81 ASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        81 ~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +=...+...+-...++|+|++.....+                         ...+|+.-.+-|+|||++++.-
T Consensus       122 ~d~~~~l~~~~~~~~fD~V~~d~~~~~-------------------------~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          122 GPALQSLESLGECPAFDLIFIDADKPN-------------------------NPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             SCHHHHHHTCCSCCCCSEEEECSCGGG-------------------------HHHHHHHHHHTCCTTCEEEEEC
T ss_pred             cCHHHHHHhcCCCCCeEEEEECCchHH-------------------------HHHHHHHHHHhcCCCeEEEEeC
Confidence            111112223323468999998653211                         3446666678999999988753

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=95.95  E-value=0.01  Score=48.92  Aligned_cols=45  Identities=9%  Similarity=-0.096  Sum_probs=28.5

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      ++++|+++++..+|+...        +.+            ...+. ..+-|+|||++++......
T Consensus       114 ~~~fD~i~~~~~~~~~~~--------~~~------------~~~l~-~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          114 KLQFDLVLLDPPYAKQEI--------VSQ------------LEKML-ERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             TCCEEEEEECCCGGGCCH--------HHH------------HHHHH-HTTCEEEEEEEEEEEETTC
T ss_pred             CCCCCEEEECCCCCchhH--------HHH------------HHHHH-HhcccCCCCEEEEEeCCcc
Confidence            788999999877663111        111            11122 2566999999998876543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=95.94  E-value=0.022  Score=50.60  Aligned_cols=99  Identities=17%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+...               .|..+|+.-|.-. +.-...+      +.. ...+  ..+  +..+
T Consensus        83 ~vLDiG~G~G~~~i~la~~---------------~~~~~v~~vD~s~-~~~~~a~------~~~-~~~~--l~~--v~~~  135 (249)
T 3g89_A           83 RVLDLGTGAGFPGLPLKIV---------------RPELELVLVDATR-KKVAFVE------RAI-EVLG--LKG--ARAL  135 (249)
T ss_dssp             EEEEETCTTTTTHHHHHHH---------------CTTCEEEEEESCH-HHHHHHH------HHH-HHHT--CSS--EEEE
T ss_pred             EEEEEcCCCCHHHHHHHHH---------------CCCCEEEEEECCH-HHHHHHH------HHH-HHhC--CCc--eEEE
Confidence            7999999999998865421               1346777777321 1111111      111 1111  123  2223


Q ss_pred             CCccccccC---CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRLF---PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l~---P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -+....-..   +++++|+|+|.+.-                          ++..+++.-.+=|+|||++++.-
T Consensus       136 ~~d~~~~~~~~~~~~~fD~I~s~a~~--------------------------~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          136 WGRAEVLAREAGHREAYARAVARAVA--------------------------PLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             ECCHHHHTTSTTTTTCEEEEEEESSC--------------------------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ECcHHHhhcccccCCCceEEEECCcC--------------------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence            344433222   24789999986421                          14567777888999999998765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.92  E-value=0.014  Score=49.93  Aligned_cols=18  Identities=11%  Similarity=0.242  Sum_probs=15.2

Q ss_pred             eEEEeeCCCCCcccHHHH
Q 045960            2 IRFADLGCSSGPNALLPT   19 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~   19 (300)
                      -+|.|+||++|..++.+.
T Consensus        60 ~~vLdiG~G~G~~~~~la   77 (223)
T 3duw_A           60 RNILEIGTLGGYSTIWLA   77 (223)
T ss_dssp             SEEEEECCTTSHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHH
Confidence            379999999999988654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.92  E-value=0.014  Score=50.00  Aligned_cols=44  Identities=18%  Similarity=0.111  Sum_probs=30.7

Q ss_pred             ccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           85 SFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        85 SFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      .......+.+++|++++...++.   ++.                         .-.+-|+|||++++.+..
T Consensus       141 d~~~~~~~~~~fD~i~~~~~~~~---~~~-------------------------~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          141 DGRMGYAEEAPYDAIHVGAAAPV---VPQ-------------------------ALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSS---CCH-------------------------HHHHTEEEEEEEEEEESC
T ss_pred             CcccCcccCCCcCEEEECCchHH---HHH-------------------------HHHHhcCCCcEEEEEEec
Confidence            33333345678999999988875   231                         234679999999998753

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=95.90  E-value=0.013  Score=52.41  Aligned_cols=98  Identities=12%  Similarity=0.116  Sum_probs=56.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhc-CCCCCceeeee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEK-GHEFGSCFVAA   81 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~-~~~~~~~f~~~   81 (300)
                      +|.|+||++|..++.+...+              .|..+|+.-|.-.. .      +......... . +  ..++  ..
T Consensus       113 ~VLD~G~G~G~~~~~la~~~--------------~~~~~v~~vD~s~~-~------~~~a~~~~~~-~~g--~~~v--~~  166 (275)
T 1yb2_A          113 DILEVGVGSGNMSSYILYAL--------------NGKGTLTVVERDED-N------LKKAMDNLSE-FYD--IGNV--RT  166 (275)
T ss_dssp             EEEEECCTTSHHHHHHHHHH--------------TTSSEEEEECSCHH-H------HHHHHHHHHT-TSC--CTTE--EE
T ss_pred             EEEEecCCCCHHHHHHHHHc--------------CCCCEEEEEECCHH-H------HHHHHHHHHh-cCC--CCcE--EE
Confidence            79999999999887654422              12356777775221 0      0000111111 1 1  1222  22


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +-+.+.. .+|++++|++++    |    +|.                   ...+|+.-.+-|+|||++++..
T Consensus       167 ~~~d~~~-~~~~~~fD~Vi~----~----~~~-------------------~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          167 SRSDIAD-FISDQMYDAVIA----D----IPD-------------------PWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             ECSCTTT-CCCSCCEEEEEE----C----CSC-------------------GGGSHHHHHHTEEEEEEEEEEE
T ss_pred             EECchhc-cCcCCCccEEEE----c----CcC-------------------HHHHHHHHHHHcCCCCEEEEEe
Confidence            3455554 678889999998    2    332                   1255666778899999999876

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=95.83  E-value=0.011  Score=54.41  Aligned_cols=45  Identities=11%  Similarity=0.115  Sum_probs=30.9

Q ss_pred             CCCcccEEEeccccc---cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           92 PHNFLDFVYSSYALH---WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        92 P~~sv~~~~Ss~alH---WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      |..++|+|+|..+.|   |..+                 + .+.+ ..|..-.+-|||||.|++.+.
T Consensus       145 ~~~~fD~V~sd~~~~~g~~~~d-----------------~-~~~l-~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          145 PPERCDTLLCDIGESSPNPTVE-----------------A-GRTL-RVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             CCCCCSEEEECCCCCCSSHHHH-----------------H-HHHH-HHHHHHHHHCCTTCEEEEEES
T ss_pred             CcCCCCEEEECCccccCcchhh-----------------H-HHHH-HHHHHHHHHhCCCCEEEEEeC
Confidence            678999999988764   4211                 0 0011 366666789999999998664

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=95.81  E-value=0.0085  Score=49.35  Aligned_cols=17  Identities=35%  Similarity=0.294  Sum_probs=14.5

Q ss_pred             EEEeeCCCCCcccHHHH
Q 045960            3 RFADLGCSSGPNALLPT   19 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~   19 (300)
                      +|.|+||++|..++.+.
T Consensus        34 ~vLDlGcG~G~~~~~l~   50 (177)
T 2esr_A           34 RVLDLFAGSGGLAIEAV   50 (177)
T ss_dssp             EEEEETCTTCHHHHHHH
T ss_pred             eEEEeCCCCCHHHHHHH
Confidence            79999999999887543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.76  E-value=0.0088  Score=55.16  Aligned_cols=49  Identities=12%  Similarity=0.007  Sum_probs=34.3

Q ss_pred             CCCcccEEEecccccc-ccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           92 PHNFLDFVYSSYALHW-LSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        92 P~~sv~~~~Ss~alHW-LS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +++++|++++....|| ++..+..+                ....|++.-.+-|+|||+|++....
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~~~~l----------------~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          148 TEERYDVVIIDLTDPVGEDNPARLL----------------YTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGG----------------SSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cCCCccEEEECCCCcccccCcchhc----------------cHHHHHHHHHHhcCCCcEEEEEccC
Confidence            4678999999998888 22211100                0256777778899999999998654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=95.61  E-value=0.09  Score=48.86  Aligned_cols=28  Identities=14%  Similarity=0.157  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960          130 ESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus       130 ~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      .+|+..+|+.-.+-|+|||.++++....
T Consensus       248 ~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          248 FDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            4567888988889999999988877544

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.57  E-value=0.025  Score=48.30  Aligned_cols=22  Identities=9%  Similarity=0.111  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHhhccCceeEEEE
Q 045960          133 FSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+|+.-.+-|+|||++++.-
T Consensus       153 ~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          153 TDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCcEEEEeC
Confidence            4556666778899999998753

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.49  E-value=0.067  Score=46.16  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.+.+.                 ..+|+..|.-.. .-...+      ..... .+-. .+  +..+
T Consensus        94 ~vldiG~G~G~~~~~l~~~-----------------~~~v~~vD~~~~-~~~~a~------~~~~~-~~~~-~~--~~~~  145 (248)
T 2yvl_A           94 RVLEFGTGSGALLAVLSEV-----------------AGEVWTFEAVEE-FYKTAQ------KNLKK-FNLG-KN--VKFF  145 (248)
T ss_dssp             EEEEECCTTSHHHHHHHHH-----------------SSEEEEECSCHH-HHHHHH------HHHHH-TTCC-TT--EEEE
T ss_pred             EEEEeCCCccHHHHHHHHh-----------------CCEEEEEecCHH-HHHHHH------HHHHH-cCCC-Cc--EEEE
Confidence            7999999999988766543                 135555554211 101110      11111 1100 11  1223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+.+...+++++++|++++.        .|.    +               ..+|+.-.+-|+|||++++...
T Consensus       146 ~~d~~~~~~~~~~~D~v~~~--------~~~----~---------------~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          146 NVDFKDAEVPEGIFHAAFVD--------VRE----P---------------WHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             CSCTTTSCCCTTCBSEEEEC--------SSC----G---------------GGGHHHHHHHBCTTCEEEEEES
T ss_pred             EcChhhcccCCCcccEEEEC--------CcC----H---------------HHHHHHHHHHcCCCCEEEEEeC
Confidence            45555544477899999973        221    1               2344555678999999999874

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=95.43  E-value=0.019  Score=55.43  Aligned_cols=94  Identities=15%  Similarity=0.069  Sum_probs=59.0

Q ss_pred             eEEEeeCCC------CCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCC
Q 045960            2 IRFADLGCS------SGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFG   75 (300)
Q Consensus         2 ~~iaD~Gcs------~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~   75 (300)
                      .+|.|+||+      +|..|+.++...              .|..+|+--|+-.+=   .+           .  .   +
T Consensus       218 ~rVLDIGCG~~~~~~TGG~Sl~la~~~--------------fP~a~V~GVDiSp~m---~~-----------~--~---~  264 (419)
T 3sso_A          218 VRVLEIGVGGYKHPEWGGGSLRMWKSF--------------FPRGQIYGLDIMDKS---HV-----------D--E---L  264 (419)
T ss_dssp             CEEEEECCSCTTCSSCCCHHHHHHHHH--------------CTTCEEEEEESSCCG---GG-----------C--B---T
T ss_pred             CEEEEEecCCCcCCCCCHHHHHHHHHh--------------CCCCEEEEEECCHHH---hh-----------c--C---C
Confidence            489999999      777777554321              134678888875541   10           0  0   1


Q ss_pred             ce-eeeecCCccccccCC------CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCc
Q 045960           76 SC-FVAASPGSFYTRLFP------HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQG  148 (300)
Q Consensus        76 ~~-f~~~vpgSFy~~l~P------~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG  148 (300)
                      ++ |..   |....-=|+      ++++|+|+|..+ ||.                      .|...+|+.-.+-|||||
T Consensus       265 rI~fv~---GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~----------------------~d~~~aL~el~rvLKPGG  318 (419)
T 3sso_A          265 RIRTIQ---GDQNDAEFLDRIARRYGPFDIVIDDGS-HIN----------------------AHVRTSFAALFPHVRPGG  318 (419)
T ss_dssp             TEEEEE---CCTTCHHHHHHHHHHHCCEEEEEECSC-CCH----------------------HHHHHHHHHHGGGEEEEE
T ss_pred             CcEEEE---ecccccchhhhhhcccCCccEEEECCc-ccc----------------------hhHHHHHHHHHHhcCCCe
Confidence            22 222   232222233      689999999865 652                      245677888889999999


Q ss_pred             eeEEEE
Q 045960          149 RMVLTL  154 (300)
Q Consensus       149 ~~vl~~  154 (300)
                      ++++.=
T Consensus       319 vlVi~D  324 (419)
T 3sso_A          319 LYVIED  324 (419)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999963

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.41  E-value=0.028  Score=53.93  Aligned_cols=120  Identities=18%  Similarity=0.164  Sum_probs=67.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||+.|..|+.+....               +..+|+.+|.-.+=...+-+.+..        .+.  ...+   +
T Consensus       249 ~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~~~~~l~~~~~~~~~--------~g~--~~~~---~  300 (429)
T 1sqg_A          249 HILDLCAAPGGKTTHILEVA---------------PEAQVVAVDIDEQRLSRVYDNLKR--------LGM--KATV---K  300 (429)
T ss_dssp             EEEEESCTTCHHHHHHHHHC---------------TTCEEEEEESSTTTHHHHHHHHHH--------TTC--CCEE---E
T ss_pred             eEEEECCCchHHHHHHHHHc---------------CCCEEEEECCCHHHHHHHHHHHHH--------cCC--CeEE---E
Confidence            79999999999998765421               125788888655433333222211        111  1112   2


Q ss_pred             CCcccc--ccCCCCcccEEEec---cccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYT--RLFPHNFLDFVYSS---YALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~--~l~P~~sv~~~~Ss---~alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+.+..  ..+|.+++|.|++.   +.+..+.+.|+...  ++..+.     ...+....+|+.-.+-|+|||+|+....
T Consensus       301 ~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~-----~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          301 QGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIP-----ELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             ECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHH-----HHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             eCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHH-----HHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            223222  22567889999973   34445555443110  122221     1233346788888889999999998763

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=95.34  E-value=0.12  Score=46.50  Aligned_cols=101  Identities=11%  Similarity=-0.054  Sum_probs=54.7

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+...            +   +. +|+..|+-..     .  +......... ++-. +.+  ..+
T Consensus       128 ~VLDlgcG~G~~~~~la~~------------~---~~-~V~~vD~s~~-----~--~~~a~~n~~~-n~~~-~~v--~~~  180 (278)
T 2frn_A          128 LVVDMFAGIGHLSLPIAVY------------G---KA-KVIAIEKDPY-----T--FKFLVENIHL-NKVE-DRM--SAY  180 (278)
T ss_dssp             EEEETTCTTTTTHHHHHHH------------T---CC-EEEEECCCHH-----H--HHHHHHHHHH-TTCT-TTE--EEE
T ss_pred             EEEEecccCCHHHHHHHHh------------C---CC-EEEEEECCHH-----H--HHHHHHHHHH-cCCC-ceE--EEE
Confidence            6999999999998866431            1   12 5777665211     0  0001111111 1111 112  113


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      -+....-+ +.+++|++++..        |..                  ...+|..-.+-|+|||++++...+.
T Consensus       181 ~~D~~~~~-~~~~fD~Vi~~~--------p~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          181 NMDNRDFP-GENIADRILMGY--------VVR------------------THEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             CSCTTTCC-CCSCEEEEEECC--------CSS------------------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ECCHHHhc-ccCCccEEEECC--------chh------------------HHHHHHHHHHHCCCCeEEEEEEeec
Confidence            33443333 378899998842        211                  1345555667899999999877654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=95.34  E-value=0.084  Score=48.44  Aligned_cols=50  Identities=16%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             CcccEEEeccccccccC-CCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           94 NFLDFVYSSYALHWLSR-MPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        94 ~sv~~~~Ss~alHWLS~-vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +++|+|+|+.+.+|.-. .+.... .           ...+...|+.-.+-|||||+|++...
T Consensus       122 ~~fD~Vvsn~~~~~~g~~~~d~~~-~-----------~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          122 NKWDLIISDMYDPRTKHVTKENDS-K-----------EGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             SCEEEEEECCCCCC---CCSCCCC-C-----------CTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CcccEEEEcCCccccccccccccc-h-----------HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            78999999877665211 011000 0           11245677778889999999998654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=95.30  E-value=0.073  Score=55.91  Aligned_cols=111  Identities=11%  Similarity=0.039  Sum_probs=65.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhh-c--CCCCCceee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTE-K--GHEFGSCFV   79 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~-~--~~~~~~~f~   79 (300)
                      +|.|+||++|..++.+..            .+  +|..+|+.-|+-..   .|    ......+... .  .....+  +
T Consensus       724 rVLDVGCGTG~lai~LAr------------~g--~p~a~VtGVDIS~e---mL----e~AReRLa~~lnAkr~gl~n--V  780 (950)
T 3htx_A          724 TLVDFGCGSGSLLDSLLD------------YP--TSLQTIIGVDISPK---GL----ARAAKMLHVKLNKEACNVKS--A  780 (950)
T ss_dssp             EEEEETCSSSHHHHHHTS------------SC--CCCCEEEEEESCHH---HH----HHHHHHHHHHTTTTCSSCSE--E
T ss_pred             EEEEECCCCCHHHHHHHH------------hC--CCCCeEEEEECCHH---HH----HHHHHHhhhccchhhcCCCc--e
Confidence            799999999988775431            11  23357777775321   11    1111111100 0  001122  2


Q ss_pred             eecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           80 AASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        80 ~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      ..+-|+...--++.+++|+|+++.++||+..                    .+...||+.-.+-|+|| .+++..+.+
T Consensus       781 efiqGDa~dLp~~d~sFDlVV~~eVLeHL~d--------------------p~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEE--------------------DQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             EEEESCTTSCCTTSCSCCEEEEESCGGGSCH--------------------HHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             EEEECchHhCCcccCCeeEEEEeCchhhCCh--------------------HHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            2234555555567899999999999999543                    12456788888999999 777776544

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=95.17  E-value=0.045  Score=49.07  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHhhccCceeEEEEee
Q 045960          130 ESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus       130 ~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      .++...+|+.-.+-|+|||+|+.....
T Consensus       187 ~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          187 SLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             GTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            345678899888999999999887643

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=95.13  E-value=0.052  Score=49.90  Aligned_cols=122  Identities=13%  Similarity=-0.006  Sum_probs=60.5

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+....              .+.-+|+-+|.-..=-..+-       ..... .+.  .++  ..+
T Consensus       121 ~VLDlg~G~G~~t~~la~~~--------------~~~~~v~avD~s~~~l~~a~-------~~~~~-~g~--~~v--~~~  174 (315)
T 1ixk_A          121 IVADMAAAPGGKTSYLAQLM--------------RNDGVIYAFDVDENRLRETR-------LNLSR-LGV--LNV--ILF  174 (315)
T ss_dssp             EEEECCSSCSHHHHHHHHHT--------------TTCSEEEEECSCHHHHHHHH-------HHHHH-HTC--CSE--EEE
T ss_pred             EEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEcCCHHHHHHHH-------HHHHH-hCC--CeE--EEE
Confidence            79999999999998655421              11246677664321111111       11111 111  122  122


Q ss_pred             CCccccccCCCCcccEEEecc---ccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSY---ALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~---alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+.+..-..+++++|.|++..   .+.-+.+.|+...  ++..+.     ...+....+|+.-++-|||||+|++...
T Consensus       175 ~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~-----~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          175 HSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIK-----FCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             SSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHH-----HHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHH-----HHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            233322112356899999742   1222223343211  122222     2234457888888899999999988653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=95.12  E-value=0.087  Score=46.04  Aligned_cols=55  Identities=15%  Similarity=0.155  Sum_probs=32.1

Q ss_pred             cccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           86 FYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        86 Fy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +....++.+++|.++....=-|....          .  ..+...  ...+|+.-++-|+|||++++..
T Consensus       119 ~l~~~~~~~~~d~v~~~~p~p~~k~~----------~--~~~r~~--~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          119 FLPNFFEKGQLSKMFFCFPDPHFKQR----------K--HKARII--TNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             CGGGTSCTTCEEEEEEESCCCC------------------CSSCC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhccccccCEEEEECCCcccccc----------h--hHHhhc--cHHHHHHHHHHcCCCCEEEEEe
Confidence            34466888999999855433332110          0  000000  1467777888999999999854

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=95.09  E-value=0.046  Score=53.50  Aligned_cols=104  Identities=15%  Similarity=0.185  Sum_probs=54.3

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..++.+.        +.        +..+|+.-|+..  -   .....   ..... .+-. .++  ..
T Consensus       160 ~~VLDiGcGtG~la~~la--------~~--------~~~~V~gvD~s~--~---l~~A~---~~~~~-~gl~-~~v--~~  211 (480)
T 3b3j_A          160 KIVLDVGCGSGILSFFAA--------QA--------GARKIYAVEAST--M---AQHAE---VLVKS-NNLT-DRI--VV  211 (480)
T ss_dssp             CEEEEESCSTTHHHHHHH--------HT--------TCSEEEEEECHH--H---HHHHH---HHHHH-TTCT-TTE--EE
T ss_pred             CEEEEecCcccHHHHHHH--------Hc--------CCCEEEEEEcHH--H---HHHHH---HHHHH-cCCC-CcE--EE
Confidence            379999999998665332        11        235788888631  1   11111   11111 1110 122  22


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +.+.+..--+| .++|+++|+..++.+..        +            +....|..-.+-|+|||+|++..
T Consensus       212 ~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~--------e------------~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          212 IPGKVEEVSLP-EQVDIIISEPMGYMLFN--------E------------RMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             EESCTTTCCCS-SCEEEEECCCCHHHHTC--------H------------HHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EECchhhCccC-CCeEEEEEeCchHhcCc--------H------------HHHHHHHHHHHhcCCCCEEEEEe
Confidence            33444442234 58999999877443222        1            12223333347899999998654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=94.97  E-value=0.058  Score=49.18  Aligned_cols=66  Identities=9%  Similarity=-0.086  Sum_probs=35.4

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV  171 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a  171 (300)
                      +++++|+|++...-+|... +..                -....|++.-++-|+|||+|++.....   . ...+.+..+
T Consensus       160 ~~~~fD~Ii~d~~~~~~~~-~~~----------------l~~~~~l~~~~~~LkpgG~lv~~~~~~---~-~~~~~~~~~  218 (296)
T 1inl_A          160 FKNEFDVIIIDSTDPTAGQ-GGH----------------LFTEEFYQACYDALKEDGVFSAETEDP---F-YDIGWFKLA  218 (296)
T ss_dssp             CSSCEEEEEEEC---------------------------CCSHHHHHHHHHHEEEEEEEEEECCCT---T-TTHHHHHHH
T ss_pred             CCCCceEEEEcCCCcccCc-hhh----------------hhHHHHHHHHHHhcCCCcEEEEEccCc---c-cCHHHHHHH
Confidence            3578999999766666432 100                012566777788899999999975211   0 111445555


Q ss_pred             HHHHHHc
Q 045960          172 LKDMISE  178 (300)
Q Consensus       172 l~~mv~e  178 (300)
                      ++.|.+.
T Consensus       219 ~~~l~~~  225 (296)
T 1inl_A          219 YRRISKV  225 (296)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555444

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=94.96  E-value=0.096  Score=45.78  Aligned_cols=18  Identities=22%  Similarity=0.385  Sum_probs=15.6

Q ss_pred             EEEeeCCCCCcccHHHHH
Q 045960            3 RFADLGCSSGPNALLPTW   20 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~   20 (300)
                      +|.|+||++|..++.+..
T Consensus        73 ~VLeiG~G~G~~~~~la~   90 (237)
T 3c3y_A           73 KTIEVGVFTGYSLLLTAL   90 (237)
T ss_dssp             EEEEECCTTSHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHH
Confidence            799999999999987654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=94.86  E-value=0.14  Score=47.48  Aligned_cols=113  Identities=17%  Similarity=0.072  Sum_probs=62.7

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|.||++|..++.+....           +   |...|+..|.-.   ..+    ......... .+-  .  .+.-+
T Consensus       206 ~vLD~gcGsG~~~ie~a~~~-----------~---~~~~v~g~Di~~---~~i----~~a~~n~~~-~g~--~--~i~~~  259 (354)
T 3tma_A          206 RVLDPFTGSGTIALEAASTL-----------G---PTSPVYAGDLDE---KRL----GLAREAALA-SGL--S--WIRFL  259 (354)
T ss_dssp             CEEESSCTTSHHHHHHHHHH-----------C---TTSCEEEEESCH---HHH----HHHHHHHHH-TTC--T--TCEEE
T ss_pred             EEEeCCCCcCHHHHHHHHhh-----------C---CCceEEEEECCH---HHH----HHHHHHHHH-cCC--C--ceEEE
Confidence            68999999998877654432           0   235566666421   111    000111111 111  1  12223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+.+..-..|..++|+++++--.+|...  .    ..        +.......+++.-.+-|+|||++++...
T Consensus       260 ~~D~~~~~~~~~~~D~Ii~npPyg~r~~--~----~~--------~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          260 RADARHLPRFFPEVDRILANPPHGLRLG--R----KE--------GLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             ECCGGGGGGTCCCCSEEEECCCSCC----------CH--------HHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             eCChhhCccccCCCCEEEECCCCcCccC--C----cc--------cHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            3455554456677899999876665221  0    11        2234457888888899999999998763

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=94.85  E-value=0.03  Score=50.61  Aligned_cols=45  Identities=16%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ++++|++++....||-.  |..+         |       -..|++.-.+-|+|||++++...
T Consensus       150 ~~~fD~Ii~d~~~~~~~--~~~l---------~-------~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          150 NRGFDVIIADSTDPVGP--AKVL---------F-------SEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             CCCEEEEEEECCCCC-------T---------T-------SHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCeeEEEECCCCCCCc--chhh---------h-------HHHHHHHHHHhcCCCcEEEEEcC
Confidence            56799999987766611  1100         0       14567777788999999999853

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=94.58  E-value=0.14  Score=44.84  Aligned_cols=18  Identities=17%  Similarity=0.128  Sum_probs=15.5

Q ss_pred             EEEeeCCCCCcccHHHHH
Q 045960            3 RFADLGCSSGPNALLPTW   20 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~   20 (300)
                      +|.|+||++|..|+.+.+
T Consensus        84 ~VLDiG~GtG~~t~~la~  101 (236)
T 2bm8_A           84 TIVELGVYNGGSLAWFRD  101 (236)
T ss_dssp             EEEEECCTTSHHHHHHHH
T ss_pred             EEEEEeCCCCHHHHHHHH
Confidence            799999999999986554

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=94.52  E-value=0.031  Score=51.71  Aligned_cols=45  Identities=16%  Similarity=0.193  Sum_probs=27.3

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +++++|++++...-||   .|.        ...|.       ..|++.-.+-|+|||++++..
T Consensus       178 ~~~~fD~Ii~d~~~~~---~~~--------~~l~t-------~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          178 HKNEFDVIITDSSDPV---GPA--------ESLFG-------QSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CTTCEEEEEECCC-------------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCceEEEEcCCCCC---Ccc--------hhhhH-------HHHHHHHHhhcCCCeEEEEEC
Confidence            5678999999776555   221        00010       567777788999999999876

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=94.48  E-value=0.071  Score=47.09  Aligned_cols=18  Identities=17%  Similarity=0.281  Sum_probs=15.4

Q ss_pred             EEEeeCCCCCcccHHHHH
Q 045960            3 RFADLGCSSGPNALLPTW   20 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~   20 (300)
                      +|.|+||++|..++.+..
T Consensus        82 ~VLeiG~G~G~~~~~la~   99 (247)
T 1sui_A           82 NTMEIGVYTGYSLLATAL   99 (247)
T ss_dssp             EEEEECCGGGHHHHHHHH
T ss_pred             EEEEeCCCcCHHHHHHHH
Confidence            799999999999986554

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=94.46  E-value=0.15  Score=49.11  Aligned_cols=122  Identities=11%  Similarity=0.079  Sum_probs=61.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||+.|.-|+.+...+           +   ..-+|+.+|.-..=-..+=       ..... .+.  .++-+  +
T Consensus       262 ~VLDlgaG~G~~t~~la~~~-----------~---~~~~v~a~D~s~~~l~~~~-------~~~~~-~g~--~~v~~--~  315 (450)
T 2yxl_A          262 TVVDLAAAPGGKTTHLAELM-----------K---NKGKIYAFDVDKMRMKRLK-------DFVKR-MGI--KIVKP--L  315 (450)
T ss_dssp             EEEESSCTTCHHHHHHHHHT-----------T---TCSEEEEECSCHHHHHHHH-------HHHHH-TTC--CSEEE--E
T ss_pred             EEEEeCCCccHHHHHHHHHc-----------C---CCCEEEEEcCCHHHHHHHH-------HHHHH-cCC--CcEEE--E
Confidence            79999999999998765421           1   1246777775321111111       11111 111  22222  2


Q ss_pred             CCcccc--ccCCCCcccEEEec---cccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYT--RLFPHNFLDFVYSS---YALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~--~l~P~~sv~~~~Ss---~alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+.+-.  .-++++++|.|++.   +.+.-+.+.|+...  ++..+..     ....-..+|+.-++-|+|||+|+....
T Consensus       316 ~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~-----l~~~q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          316 VKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINE-----MSQLQRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             CSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHH-----HHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             EcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHH-----HHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            222221  12566789999962   23333333342100  0122211     122235778888888999999987654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=94.31  E-value=0.61  Score=43.69  Aligned_cols=28  Identities=11%  Similarity=-0.020  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960          128 QFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       128 q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ...+++..+|..-.+-|+|||.+++...
T Consensus       299 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          299 RAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            3467788999999999999999988764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=94.19  E-value=0.32  Score=42.88  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhhccCceeEEEE
Q 045960          133 FSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+|..-.+-|++||++|++-
T Consensus        98 i~~Il~~~~~~L~~~~~lVlq~  119 (225)
T 3kr9_A           98 IARILEEGLGKLANVERLILQP  119 (225)
T ss_dssp             HHHHHHHTGGGCTTCCEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEEEC
Confidence            4667777778899999998854

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=94.10  E-value=0.077  Score=44.93  Aligned_cols=21  Identities=10%  Similarity=0.034  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhhccCceeEEE
Q 045960          133 FSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      ...+|+.-.+-|+|||++++.
T Consensus       139 ~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          139 GADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEE
T ss_pred             hHHHHHHHHHhcCCCeEEEEE
Confidence            456677777889999999874

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=94.08  E-value=0.069  Score=48.11  Aligned_cols=64  Identities=16%  Similarity=-0.021  Sum_probs=38.0

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHHH
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMVL  172 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~al  172 (300)
                      ++++|++++....+|..  |..+.                -..|++.-.+-|+|||+|++.... +.   ...+.+..++
T Consensus       146 ~~~fD~Ii~d~~~~~~~--~~~l~----------------~~~~~~~~~~~L~pgG~lv~~~~~-~~---~~~~~~~~~~  203 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGP--AVNLF----------------TKGFYAGIAKALKEDGIFVAQTDN-PW---FTPELITNVQ  203 (275)
T ss_dssp             CSCEEEEEESCSSCCSC--CCCCS----------------TTHHHHHHHHHEEEEEEEEEECCC-TT---TCHHHHHHHH
T ss_pred             CCCeeEEEECCCCCCCc--chhhh----------------HHHHHHHHHHhcCCCcEEEEEcCC-cc---ccHHHHHHHH
Confidence            57899999987777621  21111                134555566889999999988532 11   1114556666


Q ss_pred             HHHHHc
Q 045960          173 KDMISE  178 (300)
Q Consensus       173 ~~mv~e  178 (300)
                      +.|.+-
T Consensus       204 ~~l~~~  209 (275)
T 1iy9_A          204 RDVKEI  209 (275)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            655443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=94.06  E-value=0.047  Score=50.11  Aligned_cols=46  Identities=11%  Similarity=0.099  Sum_probs=28.9

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +++++|+|++....||   .|..               .-....|++.-.+-|+|||++++...
T Consensus       165 ~~~~fD~Ii~d~~~~~---~~~~---------------~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          165 NQDAFDVIITDSSDPM---GPAE---------------SLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             CSSCEEEEEEECC-----------------------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCceEEEECCCCCC---Ccch---------------hhhHHHHHHHHHhccCCCeEEEEecC
Confidence            4678999999877666   2210               00124567777889999999998764

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=94.04  E-value=0.07  Score=49.34  Aligned_cols=63  Identities=13%  Similarity=-0.029  Sum_probs=38.4

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHH--HHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHH
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDF--STFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML  169 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~--~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~  169 (300)
                      +++++|++++...-+|   -|.                 .++  ..|++.-.+-|+|||++++.....-    ...+.+.
T Consensus       186 ~~~~fDvIi~d~~~p~---~~~-----------------~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~----~~~~~~~  241 (321)
T 2pt6_A          186 VTNTYDVIIVDSSDPI---GPA-----------------ETLFNQNFYEKIYNALKPNGYCVAQCESLW----IHVGTIK  241 (321)
T ss_dssp             CCSCEEEEEEECCCSS---SGG-----------------GGGSSHHHHHHHHHHEEEEEEEEEEECCTT----TCHHHHH
T ss_pred             cCCCceEEEECCcCCC---Ccc-----------------hhhhHHHHHHHHHHhcCCCcEEEEEcCCcc----cCHHHHH
Confidence            3578999999765555   111                 011  5677777889999999999863211    1114555


Q ss_pred             HHHHHHHHc
Q 045960          170 MVLKDMISE  178 (300)
Q Consensus       170 ~al~~mv~e  178 (300)
                      ..++.+.+.
T Consensus       242 ~~~~~l~~~  250 (321)
T 2pt6_A          242 NMIGYAKKL  250 (321)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            555555443

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=94.02  E-value=0.061  Score=50.18  Aligned_cols=46  Identities=13%  Similarity=0.040  Sum_probs=31.2

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +|++++|++++....+|-   |.     ..          -....|++.-.+-|+|||+|++..
T Consensus       190 ~~~~~fDlIi~d~~~p~~---~~-----~~----------l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          190 AAEGSYDAVIVDSSDPIG---PA-----KE----------LFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             SCTTCEEEEEECCCCTTS---GG-----GG----------GGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCccEEEECCCCccC---cc-----hh----------hhHHHHHHHHHHhcCCCcEEEEec
Confidence            356889999997765441   10     00          002567777788899999999874

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=93.97  E-value=0.083  Score=45.11  Aligned_cols=18  Identities=33%  Similarity=0.344  Sum_probs=15.0

Q ss_pred             eEEEeeCCCCCcccHHHH
Q 045960            2 IRFADLGCSSGPNALLPT   19 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~   19 (300)
                      -+|.|+||++|..++.+.
T Consensus        71 ~~vLdiG~G~G~~~~~la   88 (229)
T 2avd_A           71 KKALDLGTFTGYSALALA   88 (229)
T ss_dssp             CEEEEECCTTSHHHHHHH
T ss_pred             CEEEEEcCCccHHHHHHH
Confidence            379999999999887654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=93.79  E-value=0.31  Score=43.50  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=19.1

Q ss_pred             HHHHHHHHHhhccCceeEEEEeecCC
Q 045960          134 STFLKFRSEELKSQGRMVLTLLYNDN  159 (300)
Q Consensus       134 ~~fL~~Ra~EL~~GG~~vl~~~g~~~  159 (300)
                      ..+|..-.+-|+|||++++.+....+
T Consensus       199 ~~~l~~~~~~LkpgG~l~~s~~~~~~  224 (272)
T 3a27_A          199 HKFLDKTFEFLKDRGVIHYHETVAEK  224 (272)
T ss_dssp             GGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred             HHHHHHHHHHcCCCCEEEEEEcCccc
Confidence            34555556789999999988876543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=93.78  E-value=0.12  Score=46.70  Aligned_cols=20  Identities=10%  Similarity=0.006  Sum_probs=16.4

Q ss_pred             HHHHHHH-HhhccCceeEEEE
Q 045960          135 TFLKFRS-EELKSQGRMVLTL  154 (300)
Q Consensus       135 ~fL~~Ra-~EL~~GG~~vl~~  154 (300)
                      .|++.-. +.|+|||++++.+
T Consensus       229 ~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          229 DFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             HHHHHHHHHCCCTTCEEEEEC
T ss_pred             HHHHHHHHhcCCCCCEEEEEE
Confidence            5666677 8899999999875

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=93.69  E-value=0.15  Score=49.88  Aligned_cols=122  Identities=11%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCce-eeee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSC-FVAA   81 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~-f~~~   81 (300)
                      +|.|+||++|.-|+.+.+.+           +   +.-+|+-+|.-..=-..+=+.+       .. .+.  .++ ++.+
T Consensus       120 ~VLDl~aGpG~kt~~lA~~~-----------~---~~g~V~avDis~~~l~~~~~n~-------~r-~g~--~nv~~~~~  175 (479)
T 2frx_A          120 RVMDVAAAPGSKTTQISARM-----------N---NEGAILANEFSASRVKVLHANI-------SR-CGI--SNVALTHF  175 (479)
T ss_dssp             EEEESSCTTSHHHHHHHHHT-----------T---TCSEEEEECSSHHHHHHHHHHH-------HH-HTC--CSEEEECC
T ss_pred             EEEEeCCCCCHHHHHHHHhC-----------C---CCCEEEEEECCHHHHHHHHHHH-------HH-cCC--CcEEEEeC
Confidence            79999999999998765421           1   1246676665322111111111       11 111  222 2222


Q ss_pred             cCCccccccCCCCcccEEEec---cccccccCCCCCCCC--CHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRLFPHNFLDFVYSS---YALHWLSRMPKGQGN--ESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss---~alHWLS~vP~~~~n--~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      =...+ .. .+++++|.|++.   +.+.-+.+.|+....  +..+.+     ..+....+|+.-++-|||||+||....
T Consensus       176 D~~~~-~~-~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~-----l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          176 DGRVF-GA-AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQE-----IAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             CSTTH-HH-HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHH-----HHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CHHHh-hh-hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHH-----HHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            11111 00 135679999872   344444555544332  222222     233345678888889999999988654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=93.65  E-value=0.04  Score=48.60  Aligned_cols=102  Identities=14%  Similarity=0.192  Sum_probs=54.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+...+              ++..+|+.-|.-..=       +....+.... .+.. .++-+  +
T Consensus        63 ~VLDiG~G~G~~t~~la~~~--------------~~~~~v~~iD~~~~~-------~~~a~~~~~~-~g~~-~~i~~--~  117 (242)
T 3r3h_A           63 KVLELGTFTGYSALAMSLAL--------------PDDGQVITCDINEGW-------TKHAHPYWRE-AKQE-HKIKL--R  117 (242)
T ss_dssp             EEEEEESCCSHHHHHHHHTS--------------CTTCEEEEEECCCSS-------CCCSHHHHHH-TTCT-TTEEE--E
T ss_pred             EEEEeeCCcCHHHHHHHHhC--------------CCCCEEEEEECCHHH-------HHHHHHHHHH-cCCC-CcEEE--E
Confidence            79999999999998654321              123566666653321       1111111111 1110 12211  2


Q ss_pred             CCcccccc---CC---CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRL---FP---HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l---~P---~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      -|....-+   .+   .+++|+||+...   ..                      +...+|+.-.+-|+|||++++.-
T Consensus       118 ~gda~~~l~~~~~~~~~~~fD~V~~d~~---~~----------------------~~~~~l~~~~~~LkpGG~lv~d~  170 (242)
T 3r3h_A          118 LGPALDTLHSLLNEGGEHQFDFIFIDAD---KT----------------------NYLNYYELALKLVTPKGLIAIDN  170 (242)
T ss_dssp             ESCHHHHHHHHHHHHCSSCEEEEEEESC---GG----------------------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCHHHHHHHHhhccCCCCEeEEEEcCC---hH----------------------HhHHHHHHHHHhcCCCeEEEEEC
Confidence            23333221   11   478999998643   11                      23456666678899999999853

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=93.64  E-value=0.68  Score=43.59  Aligned_cols=27  Identities=15%  Similarity=0.295  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960          129 FESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       129 ~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ..+++..+++.-.+-|+|||.+++...
T Consensus       306 ~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          306 VSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            456678888888899999999988774

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=93.47  E-value=0.06  Score=48.67  Aligned_cols=42  Identities=19%  Similarity=0.164  Sum_probs=31.0

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHH--HHHHHHHHHhhccCceeEEEE
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDF--STFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~--~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ++++|++++....||.   |.                 .++  ..|++.-.+-|+|||+|++..
T Consensus       149 ~~~fD~Ii~d~~~~~~---~~-----------------~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          149 TNTYDVIIVDSSDPIG---PA-----------------ETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CSCEEEEEEECCCTTT---GG-----------------GGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCCCC---cc-----------------hhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            5789999997766662   21                 112  567777888999999999875

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=93.33  E-value=0.6  Score=41.32  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhhccCceeEEEE
Q 045960          133 FSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+|....+-|+++|+||++-
T Consensus       104 I~~IL~~~~~~l~~~~~lIlqp  125 (230)
T 3lec_A          104 IADILNNDIDKLQHVKTLVLQP  125 (230)
T ss_dssp             HHHHHHHTGGGGTTCCEEEEEE
T ss_pred             HHHHHHHHHHHhCcCCEEEEEC
Confidence            5667777777799999988765

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=93.15  E-value=0.14  Score=44.39  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhhccCceeEEEE
Q 045960          133 FSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+|+.-.+-|+|||++++.-
T Consensus       161 ~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          161 YPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCeEEEEeC
Confidence            3456666678899999999853

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=92.76  E-value=0.16  Score=49.57  Aligned_cols=121  Identities=12%  Similarity=0.064  Sum_probs=61.7

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|.-|+.+.+.+           +   ..-+|+-+|+-..=-..+=+.       ... .+.  .   +..+
T Consensus       104 ~VLDlgaGpG~kt~~LA~~~-----------~---~~g~V~AvDis~~~l~~a~~n-------~~r-~G~--~---v~~~  156 (464)
T 3m6w_A          104 RVLDLAAAPGGKTTHLAARM-----------G---GKGLLLANEVDGKRVRGLLEN-------VER-WGA--P---LAVT  156 (464)
T ss_dssp             EEEESSCTTCHHHHHHHHHT-----------T---TCSEEEEECSCHHHHHHHHHH-------HHH-HCC--C---CEEE
T ss_pred             EEEEEcCCcCHHHHHHHHhC-----------C---CCCEEEEEECCHHHHHHHHHH-------HHH-cCC--e---EEEE
Confidence            79999999999998765421           1   124566666432111111111       111 121  1   1112


Q ss_pred             CCcccccc-CCCCcccEEEec---cccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRL-FPHNFLDFVYSS---YALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l-~P~~sv~~~~Ss---~alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -+....-. +.++++|.|++.   +.+--+.+.|+...  .+..+.+     ..+....+|+.-++-|||||+||....
T Consensus       157 ~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~-----l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          157 QAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKR-----MAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             CSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHH-----HHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             ECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHH-----HHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            22221111 135678998852   22223334443322  1333322     234447788888899999999987653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=92.01  E-value=0.76  Score=41.06  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhhccCceeEEEE
Q 045960          133 FSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+|....+-|+++|+||++=
T Consensus       104 I~~IL~~~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A          104 IRTILEEGAAKLAGVTKLILQP  125 (244)
T ss_dssp             HHHHHHHTGGGGTTCCEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEEEc
Confidence            5667777777889999988774

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=91.88  E-value=1.5  Score=41.03  Aligned_cols=27  Identities=11%  Similarity=-0.117  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960          129 FESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       129 ~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ..+++..+|..-.+-|+|||.+++...
T Consensus       310 ~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          310 GLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            457788999999999999999887764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=91.64  E-value=0.76  Score=47.00  Aligned_cols=29  Identities=14%  Similarity=0.201  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960          128 QFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus       128 q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      +..+|+..++..-.+-|+|||+|++....
T Consensus       631 ~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          631 DVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             BHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            34678889999889999999999977654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=91.53  E-value=0.49  Score=42.62  Aligned_cols=20  Identities=25%  Similarity=0.152  Sum_probs=16.5

Q ss_pred             CCCcccEEEeccccccccCC
Q 045960           92 PHNFLDFVYSSYALHWLSRM  111 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~v  111 (300)
                      |+.+.|++.++=++|-|.+-
T Consensus       165 ~~~~~DvvLllk~lh~LE~q  184 (253)
T 3frh_A          165 PAEAGDLALIFKLLPLLERE  184 (253)
T ss_dssp             CCCBCSEEEEESCHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHhhhh
Confidence            44489999999999998763

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=91.49  E-value=0.58  Score=43.76  Aligned_cols=64  Identities=17%  Similarity=0.231  Sum_probs=37.0

Q ss_pred             CCCCcccEEEeccccccccC---CCCCCCCCHHHHHHHHHhH------HHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           91 FPHNFLDFVYSSYALHWLSR---MPKGQGNESDVHKAFLNQF------ESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~---vP~~~~n~~~v~~ay~~q~------~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      .|..++|+|+++=-......   .+..  -+++..+.|...+      ...+..||+.-.+-|+|||++++.++.
T Consensus        94 ~~~~~fD~Ii~NPPy~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A           94 EPGEAFDLILGNPPYGIVGEASKYPIH--VFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             CCSSCEEEEEECCCCCCBSCTTTCSBC--CCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CccCCCCEEEECcCccCcccccccccc--cCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            35678999999632222111   1000  0234444443211      113557888888899999999998864

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=91.49  E-value=0.29  Score=44.75  Aligned_cols=67  Identities=10%  Similarity=0.017  Sum_probs=37.1

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCc--hHHH
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPG--EPML  169 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~--~~l~  169 (300)
                      |....|++.++=++|-|.+-.+                ..-|     .--++|+|||.+ +++.-+.-++..-+  +.-.
T Consensus       195 p~~~~DvaL~lkti~~Le~q~k----------------g~g~-----~ll~aL~~~~vv-VSfp~ksl~Grs~gm~~~Y~  252 (281)
T 3lcv_B          195 LDEPADVTLLLKTLPCLETQQR----------------GSGW-----EVIDIVNSPNIV-VTFPTKSLGQRSKGMFQNYS  252 (281)
T ss_dssp             CCSCCSEEEETTCHHHHHHHST----------------THHH-----HHHHHSSCSEEE-EEEECC-------CHHHHHH
T ss_pred             CCCCcchHHHHHHHHHhhhhhh----------------HHHH-----HHHHHhCCCCEE-EeccchhhcCCCcchhhHHH
Confidence            6777999999999999865211                0112     245678888765 66654332222222  4445


Q ss_pred             HHHHHHHH-cCC
Q 045960          170 MVLKDMIS-EGL  180 (300)
Q Consensus       170 ~al~~mv~-eG~  180 (300)
                      ..|...+. +|.
T Consensus       253 ~~~e~~~~~~g~  264 (281)
T 3lcv_B          253 QSFESQARERSC  264 (281)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCC
Confidence            55665444 454

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=91.07  E-value=0.26  Score=45.48  Aligned_cols=122  Identities=11%  Similarity=0.019  Sum_probs=64.1

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHH-HhhcChhhHHHHhhhcCCCCCceeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNT-VFKSLPSFYERLRTEKGHEFGSCFVA   80 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~-Lf~~l~~~~~~~~~~~~~~~~~~f~~   80 (300)
                      .+|.|.||++|.-++.+...+    ...    .  ....+|+..|+-  +... +.+      ..... .+.  .   +.
T Consensus       132 ~~VlDp~cGsG~~l~~~~~~~----~~~----~--~~~~~v~GiDi~--~~~~~~a~------~n~~~-~g~--~---~~  187 (344)
T 2f8l_A          132 VSILDPACGTANLLTTVINQL----ELK----G--DVDVHASGVDVD--DLLISLAL------VGADL-QRQ--K---MT  187 (344)
T ss_dssp             EEEEETTCTTSHHHHHHHHHH----HTT----S--SCEEEEEEEESC--HHHHHHHH------HHHHH-HTC--C---CE
T ss_pred             CEEEeCCCCccHHHHHHHHHH----HHh----c--CCCceEEEEECC--HHHHHHHH------HHHHh-CCC--C---ce
Confidence            489999999998877655443    111    0  124777777742  1111 110      00100 111  1   11


Q ss_pred             ecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHh---HHHHH-HHHHHHHHHhhccCceeEEEEee
Q 045960           81 ASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQ---FESDF-STFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        81 ~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q---~~~D~-~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      .+-|..... .+...+|+++++--+++.+.        ++..+.|...   -..|. ..|+..-.+-|+|||++++.++.
T Consensus       188 i~~~D~l~~-~~~~~fD~Ii~NPPfg~~~~--------~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          188 LLHQDGLAN-LLVDPVDVVISDLPVGYYPD--------DENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             EEESCTTSC-CCCCCEEEEEEECCCSEESC--------HHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             EEECCCCCc-cccCCccEEEECCCCCCcCc--------hhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence            223333332 35678999999988877432        1110001000   00112 35777777889999999998853

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=90.96  E-value=1.2  Score=42.32  Aligned_cols=27  Identities=11%  Similarity=0.172  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960          128 QFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       128 q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+|+..++..-.+-|+|||++++..
T Consensus       300 ~~~~~~~~ll~~a~~~LkpGG~Lv~~s  326 (393)
T 4dmg_A          300 AMKRHLVDLVREALRLLAEEGFLWLSS  326 (393)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            446788889999999999999998554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=90.43  E-value=0.32  Score=47.33  Aligned_cols=26  Identities=15%  Similarity=0.263  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHhhccCceeEEEEe
Q 045960          130 ESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       130 ~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ......+|..-++-|+|||+||....
T Consensus       210 ~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          210 QKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            34456888888899999999987653

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=87.55  E-value=0.25  Score=44.27  Aligned_cols=19  Identities=16%  Similarity=0.099  Sum_probs=16.5

Q ss_pred             HHHHHHHhhccCceeEEEE
Q 045960          136 FLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       136 fL~~Ra~EL~~GG~~vl~~  154 (300)
                      |++.-.+-|+|||+|++..
T Consensus       153 ~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          153 RIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             HHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEEc
Confidence            7777888999999999874

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=85.37  E-value=3.1  Score=39.68  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=18.6

Q ss_pred             HHHHHHHHHhhccCceeEEEEe
Q 045960          134 STFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       134 ~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ..||+.-.+-|+|||++++.++
T Consensus       287 ~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          287 LNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEEC
Confidence            4677777788999999999885

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=85.21  E-value=3.9  Score=40.51  Aligned_cols=130  Identities=19%  Similarity=0.247  Sum_probs=63.3

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|.+|++|.-.+.+...+.            .....+++..|+-..=....  .+.     +.. .+....+ .-..
T Consensus       223 ~~VlDPaCGSG~fLi~a~~~l~------------~~~~~~i~G~Eid~~~~~lA--~~N-----l~l-~gi~~~~-~~I~  281 (542)
T 3lkd_A          223 FTLYDATMGSGSLLLNAKRYSR------------QPQTVVYFGQELNTSTYNLA--RMN-----MIL-HGVPIEN-QFLH  281 (542)
T ss_dssp             CEEEETTCTTSTTGGGHHHHCS------------CTTTCEEEEEESCHHHHHHH--HHH-----HHH-TTCCGGG-EEEE
T ss_pred             CEEeecccchhHHHHHHHHHHH------------hccCceEEEEECcHHHHHHH--HHH-----HHH-cCCCcCc-cceE
Confidence            4899999999988776554321            11246777776421111100  000     000 0100011 1111


Q ss_pred             cCCcccc--ccCCCCcccEEEec--cccccccCCCCCCCCCHHHHHHH---HHhHHHHHHHHHHHHHHhhc-cCceeEEE
Q 045960           82 SPGSFYT--RLFPHNFLDFVYSS--YALHWLSRMPKGQGNESDVHKAF---LNQFESDFSTFLKFRSEELK-SQGRMVLT  153 (300)
Q Consensus        82 vpgSFy~--~l~P~~sv~~~~Ss--~alHWLS~vP~~~~n~~~v~~ay---~~q~~~D~~~fL~~Ra~EL~-~GG~~vl~  153 (300)
                      .+-++..  ..++...+|+|+++  |...|-..-  .+.+.+.. +.|   ......|+ .|+..-.+-|+ +||++.+.
T Consensus       282 ~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~--~~~~d~rf-~~~G~~~~~s~~~~-~Fl~~~l~~Lk~~gGr~a~V  357 (542)
T 3lkd_A          282 NADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASS--GFMDDPRF-SPFGKLAPKSKADF-AFLLHGYYHLKQDNGVMAIV  357 (542)
T ss_dssp             ESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCG--GGGGSTTT-GGGSSCCCTTCCHH-HHHHHHHHTBCTTTCEEEEE
T ss_pred             ecceecccccccccccccEEEecCCcCCccccch--hhhhhhhh-hhhhhcCCCchhhH-HHHHHHHHHhCCCceeEEEE
Confidence            2233333  23667889999998  556662110  00000000 000   00111233 58888888999 99999998


Q ss_pred             Eee
Q 045960          154 LLY  156 (300)
Q Consensus       154 ~~g  156 (300)
                      ++.
T Consensus       358 lP~  360 (542)
T 3lkd_A          358 LPH  360 (542)
T ss_dssp             EET
T ss_pred             ecc
Confidence            863

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=84.42  E-value=6.6  Score=36.39  Aligned_cols=101  Identities=9%  Similarity=-0.008  Sum_probs=58.1

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+| ++|..++.+..        .    +   |..+|+.-|+-.   .    .+......... .+-  .+  +..+
T Consensus       175 ~VLDlG-G~G~~~~~la~--------~----~---~~~~v~~vDi~~---~----~l~~a~~~~~~-~g~--~~--v~~~  226 (373)
T 2qm3_A          175 DIFVLG-DDDLTSIALML--------S----G---LPKRIAVLDIDE---R----LTKFIEKAANE-IGY--ED--IEIF  226 (373)
T ss_dssp             EEEEES-CTTCHHHHHHH--------H----T---CCSEEEEECSCH---H----HHHHHHHHHHH-HTC--CC--EEEE
T ss_pred             EEEEEC-CCCHHHHHHHH--------h----C---CCCEEEEEECCH---H----HHHHHHHHHHH-cCC--CC--EEEE
Confidence            799999 99998875432        1    1   235677777521   0    11111111111 121  12  3334


Q ss_pred             CCccccccCC---CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCcee-EEEEe
Q 045960           83 PGSFYTRLFP---HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRM-VLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P---~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~-vl~~~  155 (300)
                      .|.+... +|   ++++|+|+++.-+|+.                       +...||+.-.+-|+|||++ ++.+.
T Consensus       227 ~~D~~~~-l~~~~~~~fD~Vi~~~p~~~~-----------------------~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          227 TFDLRKP-LPDYALHKFDTFITDPPETLE-----------------------AIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             CCCTTSC-CCTTTSSCBSEEEECCCSSHH-----------------------HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             EChhhhh-chhhccCCccEEEECCCCchH-----------------------HHHHHHHHHHHHcccCCeEEEEEEe
Confidence            5555543 33   4689999998665541                       1378888888999999965 55543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=83.79  E-value=1.4  Score=39.32  Aligned_cols=50  Identities=18%  Similarity=0.224  Sum_probs=37.4

Q ss_pred             EEEeeCCCCCcccHHHHH------------HHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHh
Q 045960            3 RFADLGCSSGPNALLPTW------------EAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVF   56 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf   56 (300)
                      +|.|+||++|.-|..+..            ..++.+++....    .+.++++..|...-||..++
T Consensus        32 ~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~----~~~v~~i~~D~~~~~~~~~~   93 (255)
T 3tqs_A           32 TLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ----QKNITIYQNDALQFDFSSVK   93 (255)
T ss_dssp             EEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT----CTTEEEEESCTTTCCGGGSC
T ss_pred             EEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh----CCCcEEEEcchHhCCHHHhc
Confidence            699999999999998864            466666665421    34689999998887776543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=83.36  E-value=2.7  Score=38.62  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=17.4

Q ss_pred             HHHHHHHHhhccCceeEEEEeecC
Q 045960          135 TFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus       135 ~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      .+|..-.+-|+|||.+++......
T Consensus       272 ~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          272 KFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             HHHHHHHHHcCCCCEEEEEEeecC
Confidence            455556677899999988766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	3e-87

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  263 bits (673), Expect = 3e-87
 Identities = 108/318 (33%), Positives = 165/318 (51%), Gaps = 30/318 (9%)

Query: 1   CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKP-PVLHSFLNDLPRSDFNTVFKSL 59
            +  ADLGCSSGPNAL    E I +++++  ++ R+  P    FLNDLP +DFN +F+SL
Sbjct: 52  RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL 111

Query: 60  PSFYERLRTEKGHEFGSCFVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKG----- 114
           P   +          G CF+   PGSFY RLFP N L F++SSY+L WLS++P G     
Sbjct: 112 PIENDV--------DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNK 163

Query: 115 ------QGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL------YNDNFHA 162
                       V  A+  QF+ D + FL+ R++E+   GRMVLT+L             
Sbjct: 164 GNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECC 223

Query: 163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV 222
              + + M L  M+SEGL EE K+  F + P Y  S  EV+  + KEGSF I  +E   +
Sbjct: 224 LIWQLLAMALNQMVSEGLIEEEKMDKF-NIPQYTPSPTEVEAEILKEGSFLIDHIEASEI 282

Query: 223 SWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVV 282
            W         + G      G  V + +RAV E  L + F +A ++++  R+   + +  
Sbjct: 283 YW--SSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIE-R 339

Query: 283 LDKGRGAYASLLISLVKK 300
           + K +  + ++++SL++K
Sbjct: 340 MSKEKTKFINVIVSLIRK 357

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.07
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.99
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.93
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.89
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.84
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.83
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.81
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.77
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.76
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.75
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.7
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.66
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.64
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.58
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.56
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.56
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.51
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.51
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.45
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.44
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.37
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.36
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.28
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.26
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.15
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.09
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.07
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.05
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	97.97
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	97.87
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.8
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.7
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.56
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.53
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.39
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.34
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.31
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.23
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.18
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.17
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.15
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.05
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.83
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.81
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.71
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.49
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.47
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.38
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.31
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.07
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.64
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	95.39
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	95.16
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	94.6
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	91.95
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	91.63
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	88.92
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	88.52
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	87.67
d2h00a1	250	Methyltransferase 10 domain containing protein MET	87.62
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	84.23

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=2.1e-94  Score=687.17  Aligned_cols=288  Identities=38%  Similarity=0.684  Sum_probs=267.4

Q ss_pred             CeEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceee
Q 045960            1 CIRFADLGCSSGPNALLPTWEAIDSLDKICHRLNR-KPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFV   79 (300)
Q Consensus         1 ~~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~-~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~   79 (300)
                      +|+|||||||+||||+.+|+.||++|+++|++.+. ++|+|||||||||+||||+||++||...        +..++||+
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~--------~~~~~~f~  123 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--------DVDGVCFI  123 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--------SCTTCEEE
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc--------cCCCCeEE
Confidence            48999999999999999999999999999987765 5789999999999999999999998642        23478999


Q ss_pred             eecCCccccccCCCCcccEEEeccccccccCCCCCCCC-----------CHHHHHHHHHhHHHHHHHHHHHHHHhhccCc
Q 045960           80 AASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGN-----------ESDVHKAFLNQFESDFSTFLKFRSEELKSQG  148 (300)
Q Consensus        80 ~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n-----------~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG  148 (300)
                      +|||||||+||||++|+||+||++||||||++|+++.+           |++|.+||++||++||.+||++||+||+|||
T Consensus       124 ~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG  203 (359)
T d1m6ex_         124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG  203 (359)
T ss_dssp             EEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred             EecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999872           8999999999999999999999999999999


Q ss_pred             eeEEEEeecCCCCCCCc------hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          149 RMVLTLLYNDNFHATPG------EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       149 ~~vl~~~g~~~~~~~~~------~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                      +|||+++||++.++.++      ++|.++|+|||.||+|++||+|+| |+|+|+||++|++++|+++|+|+|+++|+++.
T Consensus       204 ~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsf-n~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~  282 (359)
T d1m6ex_         204 RMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKF-NIPQYTPSPTEVEAEILKEGSFLIDHIEASEI  282 (359)
T ss_dssp             EEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGG-CCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEE
T ss_pred             EEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhc-cCccccCCHHHHHHHhccCCCeeeeeeEeeec
Confidence            99999999998776654      999999999999999999999999 99999999999999999999999999999999


Q ss_pred             cccCCccCCCCCCCCcccchHHHHHHHHHHhhhhHHHhhhChhHHHHHHHHHHHHhhhhhhhcCCCCeEEEEEEEeeC
Q 045960          223 SWLVGFVDGVDNKGSDKYARGKYVTKHVRAVGESFLANLFDDATVDEIHRRFATKVTDVVLDKGRGAYASLLISLVKK  300 (300)
Q Consensus       223 ~~~~~~~~~~~~~~~d~~~~~~~~a~~iRA~~ep~l~~hfge~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~l~r~  300 (300)
                      +|++ +.+..+ ...|..++|+.+++++|||+||+|++|||++|+|+||+||+++++++ ++++++++++++++|+||
T Consensus       283 ~~~~-~~~~~~-~~~d~~~~~~~~a~~~RA~~e~~l~~hfg~~i~D~lF~r~~~~v~~~-~~~~~~~~~~~~~sL~rK  357 (359)
T d1m6ex_         283 YWSS-CTKDGD-GGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIRK  357 (359)
T ss_dssp             ETTC-CSSCTT-CCSSTTTTTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHSSCCEEEEEEEEEEBC
T ss_pred             cccc-cccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHhh-HhhcCCceEEEEEEEEec
Confidence            9998 333221 22467788999999999999999999999999999999999999999 999999999999999998

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6e-11  Score=103.49  Aligned_cols=106  Identities=20%  Similarity=0.105  Sum_probs=81.4

Q ss_pred             eeeecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           78 FVAASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        78 f~~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      ....+........+|.+++|+++|..+|||++..                  ..|+..+|+..++-|||||+|++.....
T Consensus       135 ~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~------------------~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         135 LKCDVHLGNPLAPAVLPLADCVLTLLAMECACCS------------------LDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             EECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS------------------HHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             cccccccccccccccCCcccEEeehhhHHHhccc------------------HHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence            3344556666778999999999999999997641                  4578899999999999999999987643


Q ss_pred             CCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeecccC
Q 045960          158 DNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVSWLV  226 (300)
Q Consensus       158 ~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~~~~  226 (300)
                      .+.-                       ..... ..+.+..+.+|++++++++| |+|..++.....++.
T Consensus       197 ~~~~-----------------------~~~~~-~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~~~  240 (257)
T d2a14a1         197 LPSY-----------------------MVGKR-EFSCVALEKGEVEQAVLDAG-FDIEQLLHSPQSYSV  240 (257)
T ss_dssp             CCEE-----------------------EETTE-EEECCCCCHHHHHHHHHHTT-EEEEEEEEECCCCCT
T ss_pred             cccc-----------------------eeccc-cccccCCCHHHHHHHHHHCC-CEEEEEEEecccccc
Confidence            3210                       01223 46678889999999999999 999999888666433

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.99  E-value=3.6e-09  Score=90.42  Aligned_cols=102  Identities=14%  Similarity=0.199  Sum_probs=69.5

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      ++...==||++++|+|+|..++||+.+                      ...+|+.-++-|+|||++++.-...++.   
T Consensus        70 ~d~~~l~~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~---  124 (231)
T d1vl5a_          70 GDAEQMPFTDERFHIVTCRIAAHHFPN----------------------PASFVSEAYRVLKKGGQLLLVDNSAPEN---  124 (231)
T ss_dssp             CCC-CCCSCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEEEBCSS---
T ss_pred             cccccccccccccccccccccccccCC----------------------HHHHHHHHHHhcCCCcEEEEEeCCCCCC---
Confidence            455543489999999999999999644                      5678888999999999999977655432   


Q ss_pred             CchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          164 PGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       164 ~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                        ..+...+ +.....      .+.. .  ....+.+++.+.++++| |++++++.+..+
T Consensus       125 --~~~~~~~-~~~~~~------~~~~-~--~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~  171 (231)
T d1vl5a_         125 --DAFDVFY-NYVEKE------RDYS-H--HRAWKKSDWLKMLEEAG-FELEELHCFHKT  171 (231)
T ss_dssp             --HHHHHHH-HHHHHH------HCTT-C--CCCCBHHHHHHHHHHHT-CEEEEEEEEEEE
T ss_pred             --HHHHHHH-HHHHhh------cccC-c--ccCCCHHHHHHHHHHCC-CEEEEEEEeecC
Confidence              2222222 211111      1111 1  23457899999999999 999888776544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.93  E-value=8.4e-09  Score=89.00  Aligned_cols=101  Identities=17%  Similarity=0.284  Sum_probs=68.2

Q ss_pred             ccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCC
Q 045960           85 SFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATP  164 (300)
Q Consensus        85 SFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~  164 (300)
                      +...--||++++|+|+|+.++||+.+                      ...+|+.-.+=|||||++++...+.++.    
T Consensus        72 d~~~~~~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~~~~r~LkpgG~~~~~~~~~~~~----  125 (234)
T d1xxla_          72 TAESLPFPDDSFDIITCRYAAHHFSD----------------------VRKAVREVARVLKQDGRFLLVDHYAPED----  125 (234)
T ss_dssp             BTTBCCSCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEECBCSS----
T ss_pred             ccccccccccccceeeeeceeecccC----------------------HHHHHHHHHHeeCCCcEEEEEEcCCCCC----
Confidence            33333379999999999999999544                      5677888899999999999977655432    


Q ss_pred             chHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          165 GEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       165 ~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                       ..+...++....        ...  .......+.++++.++++.| |.+.+++.+..+
T Consensus       126 -~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~g-f~~~~~~~~~~~  172 (234)
T d1xxla_         126 -PVLDEFVNHLNR--------LRD--PSHVRESSLSEWQAMFSANQ-LAYQDIQKWNLP  172 (234)
T ss_dssp             -HHHHHHHHHHHH--------HHC--TTCCCCCBHHHHHHHHHHTT-EEEEEEEEEEEE
T ss_pred             -HHHHHHHHHHHh--------hCC--CcccccCCHHHHHHHHHHCC-CceeEEEEeeCc
Confidence             222222221100        110  11223347899999999998 999888776544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.89  E-value=4.4e-09  Score=90.45  Aligned_cols=163  Identities=17%  Similarity=0.156  Sum_probs=97.2

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+..        .     -..|..+|+.-|+-.. .=...      .+.... .+   ....+...
T Consensus        42 ~vLDlGCGtG~~~~~l~~--------~-----~~~~~~~v~giD~S~~-ml~~A------~~~~~~-~~---~~~~~~~~   97 (225)
T d1im8a_          42 NVYDLGCSRGAATLSARR--------N-----INQPNVKIIGIDNSQP-MVERC------RQHIAA-YH---SEIPVEIL   97 (225)
T ss_dssp             EEEEESCTTCHHHHHHHH--------T-----CCCSSCEEEEECSCHH-HHHHH------HHHHHT-SC---CSSCEEEE
T ss_pred             EEEEeccchhhHHHHHHH--------h-----hcCCCCceEEeCCCHH-HHHHH------HHHhHh-hc---ccchhhhc
Confidence            799999999998865432        1     1235688888884221 11111      111111 11   12222223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      -+.+..  +|....|+++|++++||++.                    +|..++|+.-++-|+|||.+++.-....+...
T Consensus        98 ~~d~~~--~~~~~~d~i~~~~~l~~~~~--------------------~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~  155 (225)
T d1im8a_          98 CNDIRH--VEIKNASMVILNFTLQFLPP--------------------EDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK  155 (225)
T ss_dssp             CSCTTT--CCCCSEEEEEEESCGGGSCG--------------------GGHHHHHHHHHHHEEEEEEEEEEEECCCSSHH
T ss_pred             cchhhc--cccccceeeEEeeeccccCh--------------------hhHHHHHHHHHHhCCCCceeecccccccccch
Confidence            334332  46678899999999999653                    35788999999999999999987554443211


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhcc----ccCCCcccCCHHHHHHHHHhcCCeeE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKS----FEDFPIYRASVDEVKQIVKKEGSFDI  214 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~----f~~~P~y~~s~eE~~~~i~~~gsF~I  214 (300)
                       .++.+...+..+....-.++.+...    + ..-.+.+|.+|++.+++++| |+-
T Consensus       156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~L~~aG-F~~  208 (225)
T d1im8a_         156 -INHLLIDLHHQFKRANGYSELEVSQKRTAL-ENVMRTDSIETHKVRLKNVG-FSQ  208 (225)
T ss_dssp             -HHHHHHHHHHHHHHHTTGGGSTTHHHHHHH-HHHCCCCCHHHHHHHHHHHT-CSE
T ss_pred             -hhhHHHHHHHHHHHHcCCCHHHHHHHHHHh-hcccCCCCHHHHHHHHHHcC-CCc
Confidence             1134444555554443334433322    1 11234569999999999999 763

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.84  E-value=2.1e-08  Score=88.07  Aligned_cols=157  Identities=17%  Similarity=0.201  Sum_probs=96.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+..        +       .|.+++..-|+|.    .+    .......... +.. .+  +..+
T Consensus        83 ~VLDvGcG~G~~~~~la~--------~-------~p~~~~~~~D~~~----~~----~~a~~~~~~~-~~~-~r--v~~~  135 (253)
T d1tw3a2          83 HVLDVGGGKGGFAAAIAR--------R-------APHVSATVLEMAG----TV----DTARSYLKDE-GLS-DR--VDVV  135 (253)
T ss_dssp             EEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECTT----HH----HHHHHHHHHT-TCT-TT--EEEE
T ss_pred             EEEEeCCCCCHHHHHHHH--------h-------cceeEEEEccCHH----HH----HHHHHHHHHh-hcc-cc--hhhc
Confidence            799999999998876542        2       2568888889874    11    1111112111 111 22  3446


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      +|+|+.. .| .++|+++++++||.++.                    ++...+|+.-++-|+|||++++.=........
T Consensus       136 ~~D~~~~-~~-~~~D~v~~~~vlh~~~d--------------------~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~  193 (253)
T d1tw3a2         136 EGDFFEP-LP-RKADAIILSFVLLNWPD--------------------HDAVRILTRCAEALEPGGRILIHERDDLHENS  193 (253)
T ss_dssp             ECCTTSC-CS-SCEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGC
T ss_pred             cccchhh-cc-cchhheeeccccccCCc--------------------hhhHHHHHHHHHhcCCCcEEEEEeccCCCCCc
Confidence            7888864 34 46899999999997433                    24567888899999999999886432222111


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                      ........-+.-|+.              ..-..||.+|++++++++| |++.++..+..+
T Consensus       194 ~~~~~~~~dl~~~~~--------------~~g~~rt~~e~~~ll~~AG-f~~~~v~~~~~p  239 (253)
T d1tw3a2         194 FNEQFTELDLRMLVF--------------LGGALRTREKWDGLAASAG-LVVEEVRQLPSP  239 (253)
T ss_dssp             CSHHHHHHHHHHHHH--------------HSCCCCBHHHHHHHHHHTT-EEEEEEEEEECS
T ss_pred             chhHHHHhhHHHHhh--------------CCCcCCCHHHHHHHHHHCC-CeEEEEEECCCC
Confidence            110000111111111              1123478999999999999 999988777554

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=3.1e-08  Score=83.48  Aligned_cols=97  Identities=15%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +.+-.--+|++++|+|+|+.+|||+.+                      +..+|+.-++-|+|||+|++..+...+    
T Consensus        80 ~d~~~l~~~~~~fD~I~~~~~l~h~~d----------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~----  133 (208)
T d1vlma_          80 GTAENLPLKDESFDFALMVTTICFVDD----------------------PERALKEAYRILKKGGYLIVGIVDRES----  133 (208)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGSSC----------------------HHHHHHHHHHHEEEEEEEEEEEECSSS----
T ss_pred             ccccccccccccccccccccccccccc----------------------cccchhhhhhcCCCCceEEEEecCCcc----
Confidence            444444588999999999999999644                      566788889999999999999875432    


Q ss_pred             CchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          164 PGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       164 ~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                         .+    ..+......    ...+ .--.+++|.+|+..+++++| |++.++..
T Consensus       134 ---~~----~~~~~~~~~----~~~~-~~~~~~~s~~~l~~~l~~~G-f~~i~v~~  176 (208)
T d1vlma_         134 ---FL----GREYEKNKE----KSVF-YKNARFFSTEELMDLMRKAG-FEEFKVVQ  176 (208)
T ss_dssp             ---HH----HHHHHHTTT----C-CC-STTCCCCCHHHHHHHHHHTT-CEEEEEEE
T ss_pred             ---hh----HHhhhhccc----cccc-cccccCCCHHHHHHHHHHcC-CeEEEEEE
Confidence               11    111111110    1222 23345689999999999999 88766543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=3.7e-08  Score=85.53  Aligned_cols=95  Identities=14%  Similarity=0.081  Sum_probs=66.5

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +++.. ++|++++|+|+|..++||+..                      +..+|+.-.+-|||||++++...+...... 
T Consensus        90 ~d~~~-~~~~~~fD~v~~~~~~~~~~d----------------------~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~-  145 (245)
T d1nkva_          90 NDAAG-YVANEKCDVAACVGATWIAGG----------------------FAGAEELLAQSLKPGGIMLIGEPYWRQLPA-  145 (245)
T ss_dssp             SCCTT-CCCSSCEEEEEEESCGGGTSS----------------------SHHHHHHHTTSEEEEEEEEEEEEEETTCCS-
T ss_pred             hHHhh-ccccCceeEEEEEehhhccCC----------------------HHHHHHHHHHHcCcCcEEEEEeccccCCCC-
Confidence            55554 589999999999999999654                      466788899999999999999877654321 


Q ss_pred             CchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          164 PGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       164 ~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      . +.+...+               .. .-+.-+.+..++...+++.| |++..++..
T Consensus       146 ~-~~~~~~~---------------~~-~~~~~~~~~~~~~~~~~~aG-~~~v~~~~~  184 (245)
T d1nkva_         146 T-EEIAQAC---------------GV-SSTSDFLTLPGLVGAFDDLG-YDVVEMVLA  184 (245)
T ss_dssp             S-HHHHHTT---------------TC-SCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred             h-HHHHHHh---------------cc-CCCcccCCHHHHHHHHHHcC-CEEEEEEeC
Confidence            1 1111111               11 12223457889999999999 887665544

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=1.1e-07  Score=85.19  Aligned_cols=102  Identities=15%  Similarity=0.130  Sum_probs=67.0

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHHH
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLMV  171 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~a  171 (300)
                      +++++|.++|..+++.+.+                    +++..||+.-++-|||||++++...+..+............
T Consensus       114 ~~~~fD~i~si~~~eh~~~--------------------~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~  173 (280)
T d2fk8a1         114 FAEPVDRIVSIEAFEHFGH--------------------ENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLS  173 (280)
T ss_dssp             CCCCCSEEEEESCGGGTCG--------------------GGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHH
T ss_pred             hccchhhhhHhhHHHHhhh--------------------hhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccc
Confidence            4678999999999998543                    35789999999999999999998866543210000000001


Q ss_pred             HHHHHHcCCCchhhhccccCCCc-ccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          172 LKDMISEGLAEESKVKSFEDFPI-YRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       172 l~~mv~eG~i~~e~~d~f~~~P~-y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ....-..+.     +..+ .+|. +.||.+|+...+++.| |++..++.+
T Consensus       174 ~~~~~~~df-----I~ky-ifPgg~lPS~~~l~~~~e~aG-f~v~~~~~~  216 (280)
T d2fk8a1         174 FETARFIKF-----IVTE-IFPGGRLPSTEMMVEHGEKAG-FTVPEPLSL  216 (280)
T ss_dssp             HHHHHHHHH-----HHHH-TSTTCCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred             cccccccch-----hhhh-ccCCCcccchHhhhhhHHhhc-cccceeeec
Confidence            110000011     2334 5776 5799999999999998 888666544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.76  E-value=4.1e-07  Score=80.41  Aligned_cols=96  Identities=18%  Similarity=0.160  Sum_probs=65.6

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +.+++.+-=+|++++|+|+|..++||+..                      ...+|+.-++-|||||+|++.-.......
T Consensus       122 ~~~d~~~l~~~~~sfD~V~~~~~l~h~~d----------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  179 (282)
T d2o57a1         122 KYGSFLEIPCEDNSYDFIWSQDAFLHSPD----------------------KLKVFQECARVLKPRGVMAITDPMKEDGI  179 (282)
T ss_dssp             EECCTTSCSSCTTCEEEEEEESCGGGCSC----------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTC
T ss_pred             cccccccccccccccchhhccchhhhccC----------------------HHHHHHHHHHhcCCCcEEEEEEeecCCCC
Confidence            34666665589999999999999999533                      46678889999999999999865544322


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      ..  ..+...+.              .. .+| ..++.+++++++++.| |+....+
T Consensus       180 ~~--~~~~~~~~--------------~~-~~~-~~~s~~~~~~~l~~~G-f~~i~~~  217 (282)
T d2o57a1         180 DK--SSIQPILD--------------RI-KLH-DMGSLGLYRSLAKECG-LVTLRTF  217 (282)
T ss_dssp             CG--GGGHHHHH--------------HH-TCS-SCCCHHHHHHHHHHTT-EEEEEEE
T ss_pred             ch--hHHHHHHH--------------Hh-ccC-CCCCHHHHHHHHHHcC-CceEEEE
Confidence            11  11222221              12 222 3468899999999999 7765544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.2e-09  Score=93.39  Aligned_cols=98  Identities=15%  Similarity=0.245  Sum_probs=75.5

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      ++.+...-++++++|+|.++++|||++.-                  ..|+..+|+.-++=|||||.||+....+.+.. 
T Consensus       145 ~~~~~~~~~~~~~fD~V~~~~~l~~i~~~------------------~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~-  205 (263)
T d2g72a1         145 PQPLGAGSPAPLPADALVSAFCLEAVSPD------------------LASFQRALDHITTLLRPGGHLLLIGALEESWY-  205 (263)
T ss_dssp             SSTTCSSCSSCSSEEEEEEESCHHHHCSS------------------HHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE-
T ss_pred             CCccccCCcCcCccCeeeeHHHHHHHccC------------------HHHHHHHHHHHHHHcCCCCEEEEecccCCccc-
Confidence            55566666788899999999999997651                  34588899999999999999998775443210 


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEeec
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNVS  223 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~~  223 (300)
                                            .+..- .++.|..+.+|++++++++| |+|.+++....+
T Consensus       206 ----------------------~~~~~-~~~~~~~t~e~v~~~l~~aG-f~v~~~~~~~~~  242 (263)
T d2g72a1         206 ----------------------LAGEA-RLTVVPVSEEEVREALVRSG-YKVRDLRTYIMP  242 (263)
T ss_dssp             ----------------------EETTE-EEECCCCCHHHHHHHHHHTT-EEEEEEEEEECC
T ss_pred             ----------------------ccCCc-ccccCCCCHHHHHHHHHHCC-CeEEEEEEeecc
Confidence                                  01112 45678889999999999999 999998887654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=8.6e-08  Score=84.66  Aligned_cols=157  Identities=13%  Similarity=0.114  Sum_probs=93.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      ++|.|+||++|..+..++..+..    ..     +...+.+..-| |+-.+-..++.-      ..+.  ...+++-...
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~----~~-----~~~~~~~~~vD-~s~~~l~~a~~~------~~~~--~~~~~~~~~~  103 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQA----QY-----PGVCINNEVVE-PSAEQIAKYKEL------VAKI--SNLENVKFAW  103 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHH----HS-----TTCEEEEEEEC-CCHHHHHHHHHH------HTTC--CSCTTEEEEE
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhh----hc-----cCCceEEEEEe-CcHHHHHHHHHH------Hhhc--cccccccccc
Confidence            58999999999877766554433    21     23346666667 333333333211      1110  0011111111


Q ss_pred             cCCc------cccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGS------FYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgS------Fy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ....      ....-++++++|+|+++.+|||+.+                      ...+|+.-.+-|+|||.|+++..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d----------------------~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         104 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD----------------------IPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             ECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSC----------------------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhhhhhhcchhcccCCCCceeEEEEccceecCCC----------------------HHHHHHHHHhhCCCCCEEEEEEe
Confidence            1111      1234678999999999999999544                      56788888999999999999876


Q ss_pred             ecCCCCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEE
Q 045960          156 YNDNFHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQ  215 (300)
Q Consensus       156 g~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~  215 (300)
                      ....       .....+..+...-      .+.- ..  .+++.++++.++++.| |..+
T Consensus       162 ~~~~-------~~~~l~~~~~~~~------~~~~-~~--~~~~~~~~~~~L~~~G-~~~~  204 (280)
T d1jqea_         162 SGSS-------GWDKLWKKYGSRF------PQDD-LC--QYITSDDLTQMLDNLG-LKYE  204 (280)
T ss_dssp             CTTS-------HHHHHHHHHGGGS------CCCT-TS--CCCCHHHHHHHHHHHT-CCEE
T ss_pred             cCcc-------hHHHHHHHHHHhc------CCCc-cc--ccCCHHHHHHHHHHCC-CceE
Confidence            4321       2344455443221      0111 12  2457899999999998 6543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.66  E-value=1.5e-07  Score=82.92  Aligned_cols=156  Identities=21%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..+..+.        ++       -|.++++.-|+|.  --...      ...... .+.. ..  +.-+
T Consensus        84 ~vlDvG~G~G~~~~~l~--------~~-------~P~~~~~~~Dlp~--~~~~a------~~~~~~-~~~~-~r--i~~~  136 (256)
T d1qzza2          84 HVLDVGGGNGGMLAAIA--------LR-------APHLRGTLVELAG--PAERA------RRRFAD-AGLA-DR--VTVA  136 (256)
T ss_dssp             EEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH--HHHHH------HHHHHH-TTCT-TT--EEEE
T ss_pred             EEEEECCCCCHHHHHHH--------Hh-------hcCcEEEEecChH--HHHHH------HHHHhh-cCCc-ce--eeee
Confidence            69999999997665443        22       2568888889883  11111      111211 1211 12  3346


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      +|.|+..+ |. +.|+++..+.||=+++                    ++...+|+.-++-|+|||++++.=.-..+.+.
T Consensus       137 ~~d~~~~~-p~-~~D~v~~~~vLh~~~d--------------------~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~  194 (256)
T d1qzza2         137 EGDFFKPL-PV-TADVVLLSFVLLNWSD--------------------EDALTILRGCVRALEPGGRLLVLDRADVEGDG  194 (256)
T ss_dssp             ECCTTSCC-SC-CEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEECCH-----
T ss_pred             eeeccccc-cc-cchhhhccccccccCc--------------------HHHHHHHHHHHhhcCCcceeEEEEeccCCCCc
Confidence            78998754 54 4899999999984222                    34567888899999999999876432222211


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                      .  .....++.++.-         -.  ..+-..+|.+|++++++++| |++.+.....
T Consensus       195 ~--~~~~~~~~d~~m---------l~--~~~g~~rt~~e~~~ll~~AG-f~~~~~~~~~  239 (256)
T d1qzza2         195 A--DRFFSTLLDLRM---------LT--FMGGRVRTRDEVVDLAGSAG-LALASERTSG  239 (256)
T ss_dssp             ----HHHHHHHHHHH---------HH--HHSCCCCCHHHHHHHHHTTT-EEEEEEEEEC
T ss_pred             c--cHHHHHHHHHHH---------Hh--hCCCccCCHHHHHHHHHHCC-CceeEEEEeC
Confidence            1  112222222110         00  11224479999999999999 9988876653

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.8e-08  Score=83.14  Aligned_cols=93  Identities=13%  Similarity=0.134  Sum_probs=70.1

Q ss_pred             ecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960           81 ASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNF  160 (300)
Q Consensus        81 ~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~  160 (300)
                      -+.+++.+--+|++++|+|+++.++|+++.                    .|+..+|+.-++-|+|||.+++.-....+.
T Consensus       113 f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~--------------------~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~  172 (222)
T d2ex4a1         113 YFCCGLQDFTPEPDSYDVIWIQWVIGHLTD--------------------QHLAEFLRRCKGSLRPNGIIVIKDNMAQEG  172 (222)
T ss_dssp             EEECCGGGCCCCSSCEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEEEBSSS
T ss_pred             cccccccccccccccccccccccccccchh--------------------hhhhhHHHHHHHhcCCcceEEEEEcccccc
Confidence            355678777788999999999999999543                    346778888999999999999876443321


Q ss_pred             CCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEE
Q 045960          161 HATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVET  219 (300)
Q Consensus       161 ~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~  219 (300)
                      .                       .++.  .-..+.++.++++++++++| |++.+.+.
T Consensus       173 ~-----------------------~~~~--~~~~~~~~~~~~~~l~~~aG-f~ii~~~~  205 (222)
T d2ex4a1         173 V-----------------------ILDD--VDSSVCRDLDVVRRIICSAG-LSLLAEER  205 (222)
T ss_dssp             E-----------------------EEET--TTTEEEEBHHHHHHHHHHTT-CCEEEEEE
T ss_pred             c-----------------------cccc--CCceeeCCHHHHHHHHHHcC-CEEEEEEE
Confidence            1                       0122  23446789999999999999 88877664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.58  E-value=3.6e-08  Score=83.13  Aligned_cols=104  Identities=15%  Similarity=0.243  Sum_probs=68.3

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..++.+.        +.    +     .+|+..|+ +-+.-...+.      ...+ .+  ....++.  
T Consensus        40 ~ILDiGcG~G~~~~~la--------~~----~-----~~v~giD~-S~~~i~~ak~------~~~~-~~--~~~~~~~--   90 (226)
T d1ve3a1          40 KVLDLACGVGGFSFLLE--------DY----G-----FEVVGVDI-SEDMIRKARE------YAKS-RE--SNVEFIV--   90 (226)
T ss_dssp             EEEEETCTTSHHHHHHH--------HT----T-----CEEEEEES-CHHHHHHHHH------HHHH-TT--CCCEEEE--
T ss_pred             EEEEECCCcchhhhhHh--------hh----h-----cccccccc-cccchhhhhh------hhcc-cc--ccccccc--
Confidence            79999999999886542        11    1     46777774 2222222221      1111 11  1223333  


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                       ++.-.--+|++++|+|+|+.++||+   |                 ..|+..+|+.-++-|||||++++.+..
T Consensus        91 -~d~~~l~~~~~~fD~I~~~~~l~~~---~-----------------~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1          91 -GDARKLSFEDKTFDYVIFIDSIVHF---E-----------------PLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             -CCTTSCCSCTTCEEEEEEESCGGGC---C-----------------HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -cccccccccCcCceEEEEecchhhC---C-----------------hhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence             3333334889999999999999995   3                 246888999999999999999998754

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=2.8e-06  Score=76.14  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=64.4

Q ss_pred             CCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC-------CCCc
Q 045960           93 HNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH-------ATPG  165 (300)
Q Consensus        93 ~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~-------~~~~  165 (300)
                      +.++|-++|-.++..+.+                    +++..|++...+=|+|||++++...+.....       +.. 
T Consensus       125 ~~~fD~i~si~~~eh~~~--------------------~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~-  183 (285)
T d1kpga_         125 DEPVDRIVSIGAFEHFGH--------------------ERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMS-  183 (285)
T ss_dssp             CCCCSEEEEESCGGGTCT--------------------TTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCH-
T ss_pred             cccccceeeehhhhhcCc--------------------hhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcc-
Confidence            468999999999988543                    2367899999999999999999988754311       000 


Q ss_pred             hHHHHHHHHHHHcCCCchhhhccccCCCc-ccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          166 EPMLMVLKDMISEGLAEESKVKSFEDFPI-YRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       166 ~~l~~al~~mv~eG~i~~e~~d~f~~~P~-y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ........           -+... .+|- +.||.+|+.+.+++.| |+|++.+.+
T Consensus       184 ~~~~~~~~-----------fi~ky-iFpgg~lPsl~~~~~~~e~ag-f~v~~~~~~  226 (285)
T d1kpga_         184 FTFARFLK-----------FIVTE-IFPGGRLPSIPMVQECASANG-FTVTRVQSL  226 (285)
T ss_dssp             HHHHHHHH-----------HHHHH-TSTTCCCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred             hhhhchhh-----------HHHHH-hccCCCCCChhhHHHHHHHhc-hhhcccccc
Confidence            11111111           12222 3443 5689999999999998 999877655

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.56  E-value=3.6e-08  Score=86.99  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=65.3

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHAT  163 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~  163 (300)
                      +++..--+|++++|+|+|+.+|||++.                    .|+..||+.-++-|+|||++++.-.......  
T Consensus       147 ~d~~~~~~~~~~fD~I~~~~vl~hl~d--------------------~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~--  204 (254)
T d1xtpa_         147 ASMETATLPPNTYDLIVIQWTAIYLTD--------------------ADFVKFFKHCQQALTPNGYIFFKENCSTGDR--  204 (254)
T ss_dssp             SCGGGCCCCSSCEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEEBC--CC--
T ss_pred             ccccccccCCCccceEEeeccccccch--------------------hhhHHHHHHHHHhcCCCcEEEEEecCCCCCc--
Confidence            455554578899999999999999644                    4577889988999999999988653222110  


Q ss_pred             CchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          164 PGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       164 ~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                                          ...+..  -+..++|.++++++++++| |+|.+.+
T Consensus       205 --------------------~~~d~~--d~~~~rs~~~~~~l~~~aG-f~ii~~~  236 (254)
T d1xtpa_         205 --------------------FLVDKE--DSSLTRSDIHYKRLFNESG-VRVVKEA  236 (254)
T ss_dssp             --------------------EEEETT--TTEEEBCHHHHHHHHHHHT-CCEEEEE
T ss_pred             --------------------ceeccc--CCceeCCHHHHHHHHHHcC-CEEEEEE
Confidence                                011222  3456789999999999999 8887655

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.51  E-value=8.5e-07  Score=75.86  Aligned_cols=102  Identities=12%  Similarity=0.106  Sum_probs=63.3

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH-HhhccCceeEEEEeecCCCCC
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRS-EELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra-~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      +.+. .+.+++++|+|+++.+|||+..                      -..+|+.-. +=|+|||.++++++-...   
T Consensus        71 ~~~~-~~~~~~~fD~I~~~~vleh~~d----------------------~~~~l~~i~~~~Lk~gG~l~i~~pn~~~---  124 (225)
T d2p7ia1          71 SRFE-DAQLPRRYDNIVLTHVLEHIDD----------------------PVALLKRINDDWLAEGGRLFLVCPNANA---  124 (225)
T ss_dssp             SCGG-GCCCSSCEEEEEEESCGGGCSS----------------------HHHHHHHHHHTTEEEEEEEEEEEECTTC---
T ss_pred             cccc-ccccccccccccccceeEecCC----------------------HHHHHHHHHHHhcCCCceEEEEeCCccc---
Confidence            3443 3456789999999999999755                      234454444 569999999999863321   


Q ss_pred             CCchHHHHHHHHHHHcCCCchhhh----ccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          163 TPGEPMLMVLKDMISEGLAEESKV----KSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       163 ~~~~~l~~al~~mv~eG~i~~e~~----d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                           +..-+  ....|.+.....    +.. .--....+.++++..+++.| |+|.+.+.+
T Consensus       125 -----~~~~~--~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~l~~~l~~~G-f~i~~~~~~  177 (225)
T d2p7ia1         125 -----VSRQI--AVKMGIISHNSAVTEAEFA-HGHRCTYALDTLERDASRAG-LQVTYRSGI  177 (225)
T ss_dssp             -----HHHHH--HHHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred             -----HHHHH--HHHhhhhhhhhhcCccccc-eeeeeccCHHHHHHHHHHCC-CEEEEEEEE
Confidence                 11111  112233332111    111 11123458999999999999 999887755

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=6.3e-06  Score=74.04  Aligned_cols=103  Identities=16%  Similarity=0.120  Sum_probs=69.3

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      +|++++|.|+|--++..+......             .-.+.+.+|++.-++=|||||+|++...+.++....       
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~-------------~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~-------  181 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGD-------------AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEA-------  181 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSC-------------CSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHH-------
T ss_pred             ccccccceEeechhHHhcchhhhh-------------hHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchh-------
Confidence            678899999999999664331110             112347899999999999999999999887642100       


Q ss_pred             HHHHHHHcCCCchh-------hhccccCCCc-ccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          171 VLKDMISEGLAEES-------KVKSFEDFPI-YRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       171 al~~mv~eG~i~~e-------~~d~f~~~P~-y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                           -..|..+..       =+... .+|- +.||.+|+...+++.| |+|++.+.+
T Consensus       182 -----~~~~~~~p~~~~~~~~fi~ky-iFpgg~lps~~~~~~~~e~~g-l~v~~~~~~  232 (291)
T d1kpia_         182 -----QELGLTSPMSLLRFIKFILTE-IFPGGRLPRISQVDYYSSNAG-WKVERYHRI  232 (291)
T ss_dssp             -----HHHTCCCCHHHHHHHHHHHHH-TCTTCCCCCHHHHHHHHHHHT-CEEEEEEEC
T ss_pred             -----hhccCCCchhhcccchHHHHH-hcCCCCCCCHHHHHhhhcccc-cccceeeec
Confidence                 000111100       01223 4664 6789999999999998 999888765

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.45  E-value=1.6e-07  Score=77.06  Aligned_cols=81  Identities=10%  Similarity=0.095  Sum_probs=60.3

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHHH
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPMLM  170 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~~  170 (300)
                      .+..++|+++|+.++|+++.                    .++..+++.-++-|||||++++........          
T Consensus        95 ~~~~~~D~i~~~~~l~~l~~--------------------~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~----------  144 (201)
T d1pjza_          95 RDIGHCAAFYDRAAMIALPA--------------------DMRERYVQHLEALMPQACSGLLITLEYDQA----------  144 (201)
T ss_dssp             HHHHSEEEEEEESCGGGSCH--------------------HHHHHHHHHHHHHSCSEEEEEEEEESSCSS----------
T ss_pred             ccccceeEEEEEeeeEecch--------------------hhhHHHHHHHHHhcCCCcEEEEEEcccccc----------
Confidence            34567899999999999554                    356788888999999999998877654321          


Q ss_pred             HHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEe
Q 045960          171 VLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFN  221 (300)
Q Consensus       171 al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~  221 (300)
                                       .. .-|.|..+.+|++.++. .+ |.|+.++...
T Consensus       145 -----------------~~-~~p~~~~~~~el~~l~~-~~-~~i~~~~~~~  175 (201)
T d1pjza_         145 -----------------LL-EGPPFSVPQTWLHRVMS-GN-WEVTKVGGQD  175 (201)
T ss_dssp             -----------------SS-SSCCCCCCHHHHHHTSC-SS-EEEEEEEESS
T ss_pred             -----------------cC-CCccccCCHHHHHHHhC-CC-cEEEEEEEec
Confidence                             12 45667788999998875 33 8887776553

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.44  E-value=9.3e-07  Score=76.21  Aligned_cols=45  Identities=16%  Similarity=0.322  Sum_probs=38.3

Q ss_pred             CCCcccEEEec-cccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           92 PHNFLDFVYSS-YALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        92 P~~sv~~~~Ss-~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +++++|+|+|. .++|++..                   .+|+.++|+.-++-|+|||+|++.+.
T Consensus        98 ~~~~fD~i~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_          98 INRKFDLITCCLDSTNYIID-------------------SDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CSCCEEEEEECTTGGGGCCS-------------------HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ccccccccceeeeeeeccCC-------------------HHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            46789999986 68888665                   56789999999999999999998775

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4e-06  Score=71.78  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             cCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCCCCchHHH
Q 045960           90 LFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHATPGEPML  169 (300)
Q Consensus        90 l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~~~~~~l~  169 (300)
                      -.+.+++|++++..++|.+..                    .+...+++.-++-|+|||++++........         
T Consensus       124 ~~~~~~fd~i~~~~~l~~~~~--------------------~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~---------  174 (229)
T d2bzga1         124 RTNIGKFDMIWDRGALVAINP--------------------GDRKCYADTMFSLLGKKFQYLLCVLSYDPT---------  174 (229)
T ss_dssp             GSCCCCEEEEEESSSTTTSCG--------------------GGHHHHHHHHHHTEEEEEEEEEEEEECCTT---------
T ss_pred             ccccCceeEEEEEEEEEeccc--------------------hhhHHHHHHHHhhcCCcceEEEEEcccCCC---------
Confidence            467889999999999999543                    235667778899999999999888766421         


Q ss_pred             HHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEEee
Q 045960          170 MVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETFNV  222 (300)
Q Consensus       170 ~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~~~  222 (300)
                                        .. .-|-|..+.+|++..+..  .|.|+.+|..+.
T Consensus       175 ------------------~~-~gpp~~~~~~el~~lf~~--~~~i~~le~~~~  206 (229)
T d2bzga1         175 ------------------KH-PGPPFYVPHAEIERLFGK--ICNIRCLEKVDA  206 (229)
T ss_dssp             ------------------TC-CCSSCCCCHHHHHHHHTT--TEEEEEEEEEEC
T ss_pred             ------------------CC-CCCCCCCCHHHHHHHhcC--CCEEEEEEEecc
Confidence                              11 345577899999999964  399988887654

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.36  E-value=8.2e-07  Score=77.98  Aligned_cols=146  Identities=18%  Similarity=0.263  Sum_probs=92.4

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.++        ++       .|+++++.-|||.     +..   .        ... ..+  +..+
T Consensus        84 ~vlDiGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~-----vi~---~--------~~~-~~r--i~~~  129 (244)
T d1fp1d2          84 TLVDVGGGSGRNLELII--------SK-------YPLIKGINFDLPQ-----VIE---N--------APP-LSG--IEHV  129 (244)
T ss_dssp             EEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-----HHT---T--------CCC-CTT--EEEE
T ss_pred             EEEEecCCCcHHHHHHH--------HH-------CCCCeEEEecchh-----hhh---c--------cCC-CCC--eEEe
Confidence            69999999998766433        22       3678889999983     111   1        011 122  3457


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFHA  162 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~~  162 (300)
                      +|+|++. .|..  |+++.+..||-.+.                    ++-.+.|+.-++-|+|||++++.=.-.++...
T Consensus       130 ~gd~~~~-~p~~--D~~~l~~vLh~~~d--------------------e~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~  186 (244)
T d1fp1d2         130 GGDMFAS-VPQG--DAMILKAVCHNWSD--------------------EKCIEFLSNCHKALSPNGKVIIVEFILPEEPN  186 (244)
T ss_dssp             ECCTTTC-CCCE--EEEEEESSGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEEEECSSCC
T ss_pred             cCCcccc-cccc--eEEEEehhhhhCCH--------------------HHHHHHHHHHHHHcCCCcEEEEEEEEecCCCC
Confidence            8999976 4644  99999999996333                    34567889999999999998887655443322


Q ss_pred             CCc-hHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEE
Q 045960          163 TPG-EPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVE  218 (300)
Q Consensus       163 ~~~-~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e  218 (300)
                      ... ..+...+ +|.-          -. +..--.||.+|++++++++| |+..++.
T Consensus       187 ~~~~~~~~~~~-d~~m----------~~-~~~g~ert~~e~~~ll~~AG-F~~v~v~  230 (244)
T d1fp1d2         187 TSEESKLVSTL-DNLM----------FI-TVGGRERTEKQYEKLSKLSG-FSKFQVA  230 (244)
T ss_dssp             SSHHHHHHHHH-HHHH----------HH-HHSCCCEEHHHHHHHHHHTT-CSEEEEE
T ss_pred             CchHHHHHHHH-HHHH----------Hh-hCCCcCCCHHHHHHHHHHcC-CCceEEE
Confidence            111 1121121 1100          00 11223468999999999999 8876654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.28  E-value=1.7e-06  Score=75.23  Aligned_cols=49  Identities=12%  Similarity=0.232  Sum_probs=41.1

Q ss_pred             ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           89 RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        89 ~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .+.++.++|+|+|..++||+-.   .               .+|+..+|+.-++-|+|||+|++++.
T Consensus        87 ~~~~~~~fD~V~~~~~l~~~~~---~---------------~~~~~~~l~~i~~~Lk~gG~~i~~~~  135 (252)
T d1ri5a_          87 HMDLGKEFDVISSQFSFHYAFS---T---------------SESLDIAQRNIARHLRPGGYFIMTVP  135 (252)
T ss_dssp             CCCCSSCEEEEEEESCGGGGGS---S---------------HHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccccceEEEEcceeeecCC---C---------------HHHHHHHHHHHhceeCCCCEEEEEec
Confidence            3446789999999999999543   1               56788999999999999999999885

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.26  E-value=2.1e-06  Score=71.84  Aligned_cols=49  Identities=14%  Similarity=0.180  Sum_probs=39.6

Q ss_pred             ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           89 RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        89 ~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      ++.|++++|+++++.++|++   |.                 .++..+|+.-++-|+|||++++.....
T Consensus        89 ~~~~~~~fD~I~~~~~~~~~---~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1          89 TLTFDGEYDFILSTVVMMFL---EA-----------------QTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             TCCCCCCEEEEEEESCGGGS---CT-----------------THHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             cccccccccEEEEeeeeecC---CH-----------------HHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            34578899999999999995   42                 246778998999999999999876543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.15  E-value=3.8e-06  Score=71.89  Aligned_cols=49  Identities=16%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             cccCCCCcccEEEec-cccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEee
Q 045960           88 TRLFPHNFLDFVYSS-YALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLY  156 (300)
Q Consensus        88 ~~l~P~~sv~~~~Ss-~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g  156 (300)
                      ..+-+++++|+|+|. .++||++.                    .|...+|+..++-|+|||++++.+..
T Consensus        98 ~~l~~~~~fD~I~~~~~~~~~~~~--------------------~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1          98 LEIAFKNEFDAVTMFFSTIMYFDE--------------------EDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             GGCCCCSCEEEEEECSSGGGGSCH--------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhcccccccchHhhhhhhhhcCCh--------------------HHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            334456789999986 68888643                    36788999999999999999997753

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.09  E-value=9.8e-06  Score=70.51  Aligned_cols=149  Identities=19%  Similarity=0.262  Sum_probs=90.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|..++.++        ++       -|.++++.-|||.-        +...         ....+  +..+
T Consensus        84 ~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~v--------i~~~---------~~~~r--~~~~  129 (243)
T d1kyza2          84 SLVDVGGGTGAVINTIV--------SK-------YPTIKGINFDLPHV--------IEDA---------PSYPG--VEHV  129 (243)
T ss_dssp             EEEEETCTTSHHHHHHH--------HH-------CTTSEEEEEECTTT--------TTTC---------CCCTT--EEEE
T ss_pred             EEEEecCCCcHHHHHHH--------HH-------CCCCeEEEcccHHh--------hhhc---------ccCCc--eEEe
Confidence            69999999998877544        22       25788999999963        2111         11122  4457


Q ss_pred             CCccccccCCCCcccEEEeccccc-cccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALH-WLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alH-WLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +|.|+.. .|..  |+.+-.+.|| | +                    .+|...+|+.-++-|+|||++++.=.-.++..
T Consensus       130 ~~d~~~~-~P~a--d~~~l~~vlh~~-~--------------------d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~  185 (243)
T d1kyza2         130 GGDMFVS-IPKA--DAVFMKWICHDW-S--------------------DEHCLKFLKNCYEALPDNGKVIVAECILPVAP  185 (243)
T ss_dssp             ECCTTTC-CCCC--SCEECSSSSTTS-C--------------------HHHHHHHHHHHHHHCCSSSCEEEEECEECSSC
T ss_pred             ccccccc-CCCc--ceEEEEEEeecC-C--------------------HHHHHHHHHHHHHhcCCCceEEEEEEEecCCC
Confidence            8999987 5765  4455556666 5 1                    23567789999999999999988743332222


Q ss_pred             CCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          162 ATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      .........++.+|..-         .. +.--..||.+|++++++++| |+..++...
T Consensus       186 ~~~~~~~~~~~~d~~ml---------~~-~~~g~ert~~e~~~ll~~AG-f~~vkv~~~  233 (243)
T d1kyza2         186 DSSLATKGVVHIDVIML---------AH-NPGGKERTQKEFEDLAKGAG-FQGFKVHCN  233 (243)
T ss_dssp             CCCHHHHHHHHHHHHHH---------HH-CSSCCCEEHHHHHHHHHHHC-CSCEEEEEE
T ss_pred             CCchhhHHHHHHHHHHH---------hh-CCCCCcCCHHHHHHHHHHcC-CCcEEEEEe
Confidence            11111112222222110         00 11123578999999999999 888776533

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.07  E-value=1.8e-05  Score=69.11  Aligned_cols=148  Identities=20%  Similarity=0.288  Sum_probs=91.6

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|+|+||++|.-++.+        .++       -|+++++.-|||.     +....+.           . .+  +..+
T Consensus        83 ~vvDvGGG~G~~~~~l--------~~~-------~P~l~~~v~Dlp~-----vi~~~~~-----------~-~r--v~~~  128 (244)
T d1fp2a2          83 SIVDVGGGTGTTAKII--------CET-------FPKLKCIVFDRPQ-----VVENLSG-----------S-NN--LTYV  128 (244)
T ss_dssp             EEEEETCTTSHHHHHH--------HHH-------CTTCEEEEEECHH-----HHTTCCC-----------B-TT--EEEE
T ss_pred             EEEEecCCccHHHHHH--------HHh-------CCCCeEEEecCHH-----HHHhCcc-----------c-Cc--eEEE
Confidence            6999999999876543        222       3678999999983     2221111           1 23  4458


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccC---ceeEEEEeecCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQ---GRMVLTLLYNDN  159 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~G---G~~vl~~~g~~~  159 (300)
                      +|+|++.. |  ..|+++..+.||-.++                    ++-.++|+.-++.|+||   |++++.=.-.++
T Consensus       129 ~gD~f~~~-p--~aD~~~l~~vLHdw~d--------------------~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~  185 (244)
T d1fp2a2         129 GGDMFTSI-P--NADAVLLKYILHNWTD--------------------KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK  185 (244)
T ss_dssp             ECCTTTCC-C--CCSEEEEESCGGGSCH--------------------HHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred             ecCcccCC-C--CCcEEEEEeecccCCh--------------------HHHHHHHHHHHHHcCcccCCcEEEEEEeecCC
Confidence            89999863 4  4599999999995333                    34567889899999999   555554322222


Q ss_pred             CCCCCchHHHHHHHHHHHcCCCchhhhccccCCCcccCCHHHHHHHHHhcCCeeEEEEEEE
Q 045960          160 FHATPGEPMLMVLKDMISEGLAEESKVKSFEDFPIYRASVDEVKQIVKKEGSFDIQEVETF  220 (300)
Q Consensus       160 ~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~~P~y~~s~eE~~~~i~~~gsF~I~~~e~~  220 (300)
                      ............+.+|.-           . .+-=-.||.+|++++++++| |++.++...
T Consensus       186 ~~~~~~~~~~~~~~dl~m-----------~-~~~G~ert~~e~~~ll~~AG-f~~~~i~~~  233 (244)
T d1fp2a2         186 KKDENQVTQIKLLMDVNM-----------A-CLNGKERNEEEWKKLFIEAG-FQHYKISPL  233 (244)
T ss_dssp             TTSCHHHHHHHHHHHHHG-----------G-GGTCCCEEHHHHHHHHHHTT-CCEEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHH-----------H-hCCCcCCCHHHHHHHHHHcC-CceEEEEEC
Confidence            211110111223333210           0 11113578999999999999 988776433

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=5.4e-06  Score=70.17  Aligned_cols=97  Identities=21%  Similarity=0.235  Sum_probs=62.1

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+.        +.    +     .+|+..|+-.       ..+     ...++.+   .+.++. 
T Consensus        44 ~~vLDiGcG~G~~~~~l~--------~~----~-----~~v~giD~s~-------~~l-----~~a~~~~---~~~~~~-   90 (246)
T d2avna1          44 CRVLDLGGGTGKWSLFLQ--------ER----G-----FEVVLVDPSK-------EML-----EVAREKG---VKNVVE-   90 (246)
T ss_dssp             CEEEEETCTTCHHHHHHH--------TT----T-----CEEEEEESCH-------HHH-----HHHHHHT---CSCEEE-
T ss_pred             CEEEEECCCCchhccccc--------cc----c-----eEEEEeeccc-------ccc-----ccccccc---cccccc-
Confidence            379999999999987541        11    1     3566666431       011     1112222   123332 


Q ss_pred             cCCccccccCCCCcccEEEec-cccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRLFPHNFLDFVYSS-YALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss-~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                        ++..+=-||++++|+|+|. ..+||+..                      ...+|+.-.+=|||||.+++.+.
T Consensus        91 --~~~~~l~~~~~~fD~ii~~~~~~~~~~d----------------------~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          91 --AKAEDLPFPSGAFEAVLALGDVLSYVEN----------------------KDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             --CCTTSCCSCTTCEEEEEECSSHHHHCSC----------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --ccccccccccccccceeeecchhhhhhh----------------------HHHHHHHHHhhcCcCcEEEEEEC
Confidence              3344333889999999986 57999544                      45678878899999999999885

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=2.9e-06  Score=74.82  Aligned_cols=96  Identities=16%  Similarity=0.180  Sum_probs=60.6

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|+||++|..+..+.        +       ..|..+++-.|+-..   .|         ...++...  +-.|   
T Consensus        86 ~~iLDiGcG~G~~~~~l~--------~-------~~~~~~~~giD~s~~---~~---------~~a~~~~~--~~~~---  133 (268)
T d1p91a_          86 TAVLDIGCGEGYYTHAFA--------D-------ALPEITTFGLDVSKV---AI---------KAAAKRYP--QVTF---  133 (268)
T ss_dssp             CEEEEETCTTSTTHHHHH--------H-------TCTTSEEEEEESCHH---HH---------HHHHHHCT--TSEE---
T ss_pred             CEEEEeCCCCcHHHHHHH--------H-------HCCCCEEEEecchHh---hh---------hhhhcccc--cccc---
Confidence            379999999999876433        2       124567777774211   11         01111111  1123   


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      +-++...--||++++|++++..++|++..                             -.+-|||||+|++..++.+
T Consensus       134 ~~~d~~~l~~~~~sfD~v~~~~~~~~~~e-----------------------------~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         134 CVASSHRLPFSDTSMDAIIRIYAPCKAEE-----------------------------LARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             EECCTTSCSBCTTCEEEEEEESCCCCHHH-----------------------------HHHHEEEEEEEEEEEECTT
T ss_pred             eeeehhhccCCCCCEEEEeecCCHHHHHH-----------------------------HHHHhCCCcEEEEEeeCCc
Confidence            23455566689999999999988887432                             2345999999999998754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=97.87  E-value=8.9e-06  Score=71.96  Aligned_cols=49  Identities=14%  Similarity=0.107  Sum_probs=37.5

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +++.. +-+++++|+|+|+.+|||++.                      ...+|+.-.+-|||||++++.-+
T Consensus        84 ~d~~~-~~~~~~fD~v~~~~~l~~~~d----------------------~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          84 GDATE-IELNDKYDIAICHAFLLHMTT----------------------PETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             SCTTT-CCCSSCEEEEEEESCGGGCSS----------------------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccccc-ccccCCceEEEEehhhhcCCC----------------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence            34443 333568999999999999655                      45677788899999999988764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.80  E-value=1.2e-05  Score=68.51  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=78.9

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      .|.|+||+.|.+++.+.        +       ..|+..++--|+-.+=...+.+       .. .+.+  ..|+.+.-.
T Consensus        32 lvLeIGcG~G~~~~~lA--------~-------~~p~~~~iGiD~~~~~i~~a~~-------~~-~~~~--l~Nv~~~~~   86 (204)
T d2fcaa1          32 IHIEVGTGKGQFISGMA--------K-------QNPDINYIGIELFKSVIVTAVQ-------KV-KDSE--AQNVKLLNI   86 (204)
T ss_dssp             EEEEECCTTSHHHHHHH--------H-------HCTTSEEEEECSCHHHHHHHHH-------HH-HHSC--CSSEEEECC
T ss_pred             eEEEEEecCcHHHHHHH--------H-------hCCCCcEEEeecchHHHHHHHH-------HH-HHHh--ccCchhccc
Confidence            48999999999887542        1       1367888888864222211111       11 1112  246655544


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHH--HHHHHHHHHHhhccCceeEEEEeecCCC
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESD--FSTFLKFRSEELKSQGRMVLTLLYNDNF  160 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D--~~~fL~~Ra~EL~~GG~~vl~~~g~~~~  160 (300)
                      ......+.||++++|.++..+..+|-.+                ++..+-  ...||+.-++-|||||.+++..    +.
T Consensus        87 Da~~l~~~~~~~~~d~v~i~fp~P~~k~----------------~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T----D~  146 (204)
T d2fcaa1          87 DADTLTDVFEPGEVKRVYLNFSDPWPKK----------------RHEKRRLTYSHFLKKYEEVMGKGGSIHFKT----DN  146 (204)
T ss_dssp             CGGGHHHHCCTTSCCEEEEESCCCCCSG----------------GGGGGSTTSHHHHHHHHHHHTTSCEEEEEE----SC
T ss_pred             chhhhhcccCchhhhccccccccccchh----------------hhcchhhhHHHHHHHHHHhCCCCcEEEEEE----CC
Confidence            4444446799999999999999999543                011111  1468888999999999998753    11


Q ss_pred             CCCCchHHHHHHHHHHHcC
Q 045960          161 HATPGEPMLMVLKDMISEG  179 (300)
Q Consensus       161 ~~~~~~~l~~al~~mv~eG  179 (300)
                      .    +....++..+.+.|
T Consensus       147 ~----~y~~~~~~~~~~~~  161 (204)
T d2fcaa1         147 R----GLFEYSLKSFSEYG  161 (204)
T ss_dssp             H----HHHHHHHHHHHHHT
T ss_pred             h----HHHHHHHHHHHHCC
Confidence            1    33445555555555

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.70  E-value=9.2e-05  Score=63.90  Aligned_cols=107  Identities=9%  Similarity=-0.048  Sum_probs=61.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|+|+||++|..+..+.+ +.              |.-+||--|.     +.-.      ...+... ..+.+++.+. 
T Consensus        76 ~~VLDlGcGsG~~~~~la~-~~--------------~~g~V~aVDi-----S~~~------i~~a~~~-a~~~~ni~~i-  127 (230)
T d1g8sa_          76 SKILYLGASAGTTPSHVAD-IA--------------DKGIVYAIEY-----APRI------MRELLDA-CAERENIIPI-  127 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHH-HT--------------TTSEEEEEES-----CHHH------HHHHHHH-TTTCTTEEEE-
T ss_pred             CEEEEeCEEcCHHHHHHHH-hC--------------CCCEEEEEeC-----cHHH------HHHHHHH-HhhhcccceE-
Confidence            4799999999988775543 11              1235666653     2111      0111111 1111233222 


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      .....+-.-.++...++.+++..+||..+                      ...+++.-.+-|||||++++..-.+.
T Consensus       128 ~~d~~~~~~~~~~~~~v~~i~~~~~~~~~----------------------~~~~l~~~~r~LKpgG~~~i~~k~~~  182 (230)
T d1g8sa_         128 LGDANKPQEYANIVEKVDVIYEDVAQPNQ----------------------AEILIKNAKWFLKKGGYGMIAIKARS  182 (230)
T ss_dssp             ECCTTCGGGGTTTCCCEEEEEECCCSTTH----------------------HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             EEeeccCcccccccceeEEeeccccchHH----------------------HHHHHHHHHHhcccCceEEEEeeccc
Confidence            22223333345667788888888887433                      45677777889999999998886554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.56  E-value=0.00014  Score=60.30  Aligned_cols=53  Identities=9%  Similarity=0.117  Sum_probs=39.1

Q ss_pred             eecCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           80 AASPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        80 ~~vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ..+-+..+. -+|++++|+++|+..+|+..+                     ....+|+.-.+=|+|||+|++..
T Consensus       105 ~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~---------------------~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         105 RVVHSDLYE-NVKDRKYNKIITNPPIRAGKE---------------------VLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             EEEECSTTT-TCTTSCEEEEEECCCSTTCHH---------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhh-hhccCCceEEEEcccEEecch---------------------hhhhHHHHHHHhcCcCcEEEEEE
Confidence            345566666 568899999999988887222                     13556777777899999998765

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.53  E-value=6.6e-05  Score=63.69  Aligned_cols=111  Identities=16%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      .|.|+||+.|.+++....               ..|+..++--|+-.+=.....+.       ..+ .+  ..|+-+.-.
T Consensus        34 lvLdIGcG~G~~~~~lA~---------------~~p~~~~iGid~~~~~v~~a~~~-------~~~-~~--l~Ni~~~~~   88 (204)
T d1yzha1          34 IHVEVGSGKGAFVSGMAK---------------QNPDINYIGIDIQKSVLSYALDK-------VLE-VG--VPNIKLLWV   88 (204)
T ss_dssp             EEEEESCTTSHHHHHHHH---------------HCTTSEEEEEESCHHHHHHHHHH-------HHH-HC--CSSEEEEEC
T ss_pred             eEEEEeccCCHHHHHHHH---------------HCCCCceEEEeccHHHHHHHHHh-------hhh-hc--cccceeeec
Confidence            488999999998875522               13667888888543322222111       111 12  246655555


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHH--HHHHHHHHHHhhccCceeEEEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESD--FSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D--~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...-..+.||++|+|.++.++.-.|-.+                ++..+.  -..||+.-++-|||||.+.+..
T Consensus        89 da~~l~~~~~~~~~~~i~i~fPdPw~K~----------------~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1          89 DGSDLTDYFEDGEIDRLYLNFSDPWPKK----------------RHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CSSCGGGTSCTTCCSEEEEESCCCCCSG----------------GGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CHHHHhhhccCCceehhcccccccccch----------------hhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            4444557899999999999999999544                111111  1578888999999999997753

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=0.00017  Score=63.32  Aligned_cols=52  Identities=15%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             ccCCCCcccEEEec-cccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           89 RLFPHNFLDFVYSS-YALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        89 ~l~P~~sv~~~~Ss-~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .+.+.+++|++++. .++++|...-.               ...|...+|+.-++-|||||+|++.+.
T Consensus       123 ~~~~~~~fd~v~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         123 DVPAGDGFDAVICLGNSFAHLPDSKG---------------DQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HSCCTTCEEEEEECSSCGGGSCCTTS---------------SSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCCCceEEEEecCchhhcCCccc---------------ChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            45567889999875 58888543111               135678899999999999999999875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.00021  Score=64.16  Aligned_cols=102  Identities=19%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+.+            .|.    -+|+.-|..  .--.+.+..      . +..+.. .++  .-+
T Consensus        41 ~VLDlGcGtG~ls~~aa~------------~Ga----~~V~avd~s--~~~~~a~~~------~-~~~~~~-~~i--~~i   92 (328)
T d1g6q1_          41 IVLDVGCGTGILSMFAAK------------HGA----KHVIGVDMS--SIIEMAKEL------V-ELNGFS-DKI--TLL   92 (328)
T ss_dssp             EEEEETCTTSHHHHHHHH------------TCC----SEEEEEESS--THHHHHHHH------H-HHTTCT-TTE--EEE
T ss_pred             EEEEeCCCCCHHHHHHHH------------hCC----CEEEEEeCC--HHHHHHHHH------H-HHhCcc-ccc--eEE
Confidence            689999999987765431            131    267777753  221122111      1 111111 122  223


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      -|+...--+|++++|+++|....|.+....                   ++..++.+|.+=|||||+|+
T Consensus        93 ~~~~~~l~~~~~~~D~i~se~~~~~~~~e~-------------------~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          93 RGKLEDVHLPFPKVDIIISEWMGYFLLYES-------------------MMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ESCTTTSCCSSSCEEEEEECCCBTTBSTTC-------------------CHHHHHHHHHHHEEEEEEEE
T ss_pred             EeehhhccCcccceeEEEEEecceeeccch-------------------hHHHHHHHHHhccCCCeEEE
Confidence            355556668999999999999998876633                   47788889999999999985

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00014  Score=65.04  Aligned_cols=102  Identities=15%  Similarity=0.097  Sum_probs=66.1

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+.+            .|   + -+|+.-|... .- ...+..       .+..+.. .++  .-+
T Consensus        36 ~VLDiGcG~G~ls~~aa~------------~G---a-~~V~avd~s~-~~-~~a~~~-------~~~n~~~-~~v--~~~   87 (316)
T d1oria_          36 VVLDVGSGTGILCMFAAK------------AG---A-RKVIGIECSS-IS-DYAVKI-------VKANKLD-HVV--TII   87 (316)
T ss_dssp             EEEEETCTTSHHHHHHHH------------TT---C-SEEEEEECST-TH-HHHHHH-------HHHTTCT-TTE--EEE
T ss_pred             EEEEEecCCcHHHHHHHH------------hC---C-CEEEEEcCcH-HH-hhhhhH-------HHHhCCc-ccc--ceE
Confidence            689999999987765432            12   1 3677778432 22 222111       1111111 122  234


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      -|...+--+|.+++|+++|....|.+-.                   +.++..+|.+|.+-|+|||+++
T Consensus        88 ~~~~~~~~~~~~~~D~ivs~~~~~~l~~-------------------e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          88 KGKVEEVELPVEKVDIIISEWMGYCLFY-------------------ESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             ESCTTTCCCSSSCEEEEEECCCBBTBTB-------------------TCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eccHHHcccccceeEEEeeeeeeeeecc-------------------HHHHHHHHHHHHhcCCCCeEEE
Confidence            4666666789999999999988888665                   2347889999999999999986

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00054  Score=61.68  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhhccCceeEEE
Q 045960          132 DFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus       132 D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      |+...|+...+.|||||++|+.
T Consensus       244 ~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         244 EVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEES
T ss_pred             HHHHHHHHHHHhCCCCcEEEEe
Confidence            3566778888999999999864

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00012  Score=62.10  Aligned_cols=99  Identities=15%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|..+...+           +   +.-.|+.-|.-.    .+..   .....+.. .+  ..++-.  +
T Consensus        78 ~VLdiG~GtG~~s~~la~~~-----------~---~~g~V~~id~~~----~~~~---~a~~~~~~-~~--~~n~~~--~  131 (213)
T d1dl5a1          78 RVLEIGGGTGYNAAVMSRVV-----------G---EKGLVVSVEYSR----KICE---IAKRNVER-LG--IENVIF--V  131 (213)
T ss_dssp             EEEEECCTTSHHHHHHHHHH-----------C---TTCEEEEEESCH----HHHH---HHHHHHHH-TT--CCSEEE--E
T ss_pred             eEEEecCccchhHHHHHHHh-----------C---CCCcEEEeecch----hhHH---HhhhhHhh-hc--cccccc--c
Confidence            79999999999988543211           1   224455544211    1111   01111111 11  123332  2


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -|.-..-+++.+++|.+++.+++|+   +|..                     +    .+-|||||+||+.+.
T Consensus       132 ~~d~~~~~~~~~~fD~I~~~~~~~~---~p~~---------------------l----~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         132 CGDGYYGVPEFSPYDVIFVTVGVDE---VPET---------------------W----FTQLKEGGRVIVPIN  176 (213)
T ss_dssp             ESCGGGCCGGGCCEEEEEECSBBSC---CCHH---------------------H----HHHEEEEEEEEEEBC
T ss_pred             cCchHHccccccchhhhhhhccHHH---hHHH---------------------H----HHhcCCCcEEEEEEC
Confidence            3566666777889999999999998   5631                     1    234999999988653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.17  E-value=0.00065  Score=55.78  Aligned_cols=49  Identities=18%  Similarity=0.236  Sum_probs=35.5

Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +.|...+-+++..++|.+++.-..|   .                      +..+++.-.+-|||||++++...
T Consensus        87 ~~gda~~~~~~~~~~D~v~~~~~~~---~----------------------~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          87 MEGDAPEALCKIPDIDIAVVGGSGG---E----------------------LQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             EESCHHHHHTTSCCEEEEEESCCTT---C----------------------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECchhhcccccCCcCEEEEeCccc---c----------------------chHHHHHHHHHhCcCCEEEEEee
Confidence            4567777788888999999864322   1                      34456667777999999998764

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.15  E-value=0.0029  Score=54.05  Aligned_cols=106  Identities=12%  Similarity=-0.031  Sum_probs=58.0

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCc-eeeee
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGS-CFVAA   81 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~-~f~~~   81 (300)
                      +|+|+||++|..+..+.+.+           |   |.=.||--|.-.     -+      ........ ...++ ..+.+
T Consensus        76 ~VLDlGaGsG~~t~~la~~V-----------G---~~G~V~aVD~s~-----~~------l~~a~~~a-~~~~~~~~i~~  129 (227)
T d1g8aa_          76 SVLYLGIASGTTASHVSDIV-----------G---WEGKIFGIEFSP-----RV------LRELVPIV-EERRNIVPILG  129 (227)
T ss_dssp             EEEEETTTSTTHHHHHHHHH-----------C---TTSEEEEEESCH-----HH------HHHHHHHH-SSCTTEEEEEC
T ss_pred             EEEEeccCCCHHHHHHHHHh-----------C---CCCEEEEEeCcH-----HH------HHHHHHHH-HhcCCceEEEE
Confidence            79999999999887654422           2   234555554321     11      11111100 00122 23333


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      --+.-..--.+..++|+++...+.++                        +-..+++.-.+-|||||++++..-++.
T Consensus       130 d~~~~~~~~~~~~~vD~i~~d~~~~~------------------------~~~~~l~~~~~~LkpgG~lvi~~ka~~  182 (227)
T d1g8aa_         130 DATKPEEYRALVPKVDVIFEDVAQPT------------------------QAKILIDNAEVYLKRGGYGMIAVKSRS  182 (227)
T ss_dssp             CTTCGGGGTTTCCCEEEEEECCCSTT------------------------HHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             ECCCcccccccccceEEEEEEccccc------------------------hHHHHHHHHHHhcccCCeEEEEEECCc
Confidence            33333333344567999887533221                        124567777889999999999876554

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.05  E-value=0.00076  Score=58.78  Aligned_cols=101  Identities=13%  Similarity=0.108  Sum_probs=55.9

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      -+|.|.||++|.-|+.+...+           +   |.-+|+--|.- -+|-...+      +.+... +. ..++  ..
T Consensus        87 ~rVLEiG~GsG~lt~~la~~v-----------~---~~g~V~~vD~~-e~~~~~A~------~n~~~~-~~-~~nv--~~  141 (250)
T d1yb2a1          87 MDILEVGVGSGNMSSYILYAL-----------N---GKGTLTVVERD-EDNLKKAM------DNLSEF-YD-IGNV--RT  141 (250)
T ss_dssp             CEEEEECCTTSHHHHHHHHHH-----------T---TSSEEEEECSC-HHHHHHHH------HHHHTT-SC-CTTE--EE
T ss_pred             CEEEEeeeeCcHHHHHHHHHh-----------C---CCcEEEEEECC-HHHHHHHH------HHHHHh-cC-CCce--EE
Confidence            379999999999888665433           1   23455555521 11211111      111111 11 1222  22


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      .=+.+.+ .+|++++|.++..        +|+    |.               .+|..-++-|||||++++..+
T Consensus       142 ~~~Di~~-~~~~~~fD~V~ld--------~p~----p~---------------~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         142 SRSDIAD-FISDQMYDAVIAD--------IPD----PW---------------NHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             ECSCTTT-CCCSCCEEEEEEC--------CSC----GG---------------GSHHHHHHTEEEEEEEEEEES
T ss_pred             EEeeeec-ccccceeeeeeec--------CCc----hH---------------HHHHHHHHhcCCCceEEEEeC
Confidence            2245543 4788999999863        453    22               345567788999999987653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.83  E-value=0.0013  Score=55.54  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhhccCceeEEEEeecC
Q 045960          133 FSTFLKFRSEELKSQGRMVLTLLYND  158 (300)
Q Consensus       133 ~~~fL~~Ra~EL~~GG~~vl~~~g~~  158 (300)
                      ...||+.-.+=|||||++++..-++.
T Consensus       139 ~~~~l~~~~~~LkpgG~l~i~~~~~~  164 (209)
T d1nt2a_         139 IEILKANAEFFLKEKGEVVIMVKARS  164 (209)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred             HHHHHHHHHHHhccCCeEEEEEEccc
Confidence            45677778889999999999876553

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0009  Score=59.28  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=63.6

Q ss_pred             EEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeeec
Q 045960            3 RFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAAS   82 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~v   82 (300)
                      +|.|+||++|..|+.+.+            .|   + -+|+..|...  --..++      ... ...+.. .++.+  +
T Consensus        38 ~VLDiGcG~G~lsl~aa~------------~G---a-~~V~aid~s~--~~~~a~------~~~-~~~~~~-~~i~~--~   89 (311)
T d2fyta1          38 VVLDVGCGTGILSMFAAK------------AG---A-KKVLGVDQSE--ILYQAM------DII-RLNKLE-DTITL--I   89 (311)
T ss_dssp             EEEEETCTTSHHHHHHHH------------TT---C-SEEEEEESST--HHHHHH------HHH-HHTTCT-TTEEE--E
T ss_pred             EEEEECCCCCHHHHHHHH------------cC---C-CEEEEEeCHH--HHHHHH------HHH-HHhCCC-ccceE--E
Confidence            699999999987664332            12   1 3677778532  111111      111 111111 22322  3


Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      .|...+--+|..++|+++|....|-+-.                   +..+..++.+|.+-|+|||+++.
T Consensus        90 ~~~~~~l~~~~~~~D~Ivse~~~~~~~~-------------------e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          90 KGKIEEVHLPVEKVDVIISEWMGYFLLF-------------------ESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             ESCTTTSCCSCSCEEEEEECCCBTTBTT-------------------TCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EeeHHHhcCccccceEEEEeeeeeeccc-------------------ccccHHHHHHHHhcCCCCcEEec
Confidence            4555555578899999999888877554                   22367788889999999999973

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00052  Score=58.66  Aligned_cols=45  Identities=20%  Similarity=0.188  Sum_probs=34.1

Q ss_pred             CCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           83 PGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        83 pgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      -|.-+.-..+.+++|.+++..++++   +|..                         -.+-|||||+||+.+.
T Consensus       138 ~gD~~~~~~~~~~fD~I~~~~~~~~---ip~~-------------------------l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         138 VGDGRMGYAEEAPYDAIHVGAAAPV---VPQA-------------------------LIDQLKPGGRLILPVG  182 (224)
T ss_dssp             ESCGGGCCGGGCCEEEEEECSBBSS---CCHH-------------------------HHHTEEEEEEEEEEES
T ss_pred             Eeecccccchhhhhhhhhhhcchhh---cCHH-------------------------HHhhcCCCcEEEEEEc
Confidence            3555666777889999999999987   6631                         1346999999998764

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.0032  Score=55.15  Aligned_cols=119  Identities=13%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|.||++|.-|+.+...+           +   |.-+|+--|.- -|+-...+      .......+....++  .-
T Consensus        98 ~~VLE~G~GsG~lt~~La~~v-----------g---p~G~V~~~d~~-~~~~~~Ar------~n~~~~~~~~~~nv--~~  154 (264)
T d1i9ga_          98 ARVLEAGAGSGALTLSLLRAV-----------G---PAGQVISYEQR-ADHAEHAR------RNVSGCYGQPPDNW--RL  154 (264)
T ss_dssp             CEEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEECSC-HHHHHHHH------HHHHHHHTSCCTTE--EE
T ss_pred             CEEEecCcCCcHHHHHHHHhh-----------C---CCcEEEEecCC-HHHHHHHH------HhhhhhccCCCceE--EE
Confidence            379999999999998766544           2   23455555522 22222222      11111111111222  22


Q ss_pred             cCCccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeecCCCC
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYNDNFH  161 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~~~~~  161 (300)
                      +=+.....-+|++++|.||.        ++|+    |.+               +|..-++-|||||++++..+..    
T Consensus       155 ~~~d~~~~~~~~~~fDaV~l--------dlp~----P~~---------------~l~~~~~~LkpGG~lv~~~P~i----  203 (264)
T d1i9ga_         155 VVSDLADSELPDGSVDRAVL--------DMLA----PWE---------------VLDAVSRLLVAGGVLMVYVATV----  203 (264)
T ss_dssp             ECSCGGGCCCCTTCEEEEEE--------ESSC----GGG---------------GHHHHHHHEEEEEEEEEEESSH----
T ss_pred             EecccccccccCCCcceEEE--------ecCC----HHH---------------HHHHHHhccCCCCEEEEEeCcc----
Confidence            33566777789999999985        3665    322               3445688999999998876432    


Q ss_pred             CCCchHHHHHHHHHHHc
Q 045960          162 ATPGEPMLMVLKDMISE  178 (300)
Q Consensus       162 ~~~~~~l~~al~~mv~e  178 (300)
                          +.+.+++..|..+
T Consensus       204 ----~Qv~~~~~~l~~~  216 (264)
T d1i9ga_         204 ----TQLSRIVEALRAK  216 (264)
T ss_dssp             ----HHHHHHHHHHHHH
T ss_pred             ----ChHHHHHHHHHHc
Confidence                3455555555444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.47  E-value=0.0015  Score=56.83  Aligned_cols=40  Identities=20%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             ccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEE
Q 045960           89 RLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus        89 ~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      ..+|.+++|+++++...|-                         +..++..-.+-|||||++++.
T Consensus       178 ~~~~~~~fD~V~ani~~~~-------------------------l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         178 AALPFGPFDLLVANLYAEL-------------------------HAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HHGGGCCEEEEEEECCHHH-------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccccchhhhcccccc-------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence            3578899999999755443                         233444556779999999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.38  E-value=0.0079  Score=49.60  Aligned_cols=41  Identities=12%  Similarity=0.194  Sum_probs=32.7

Q ss_pred             CCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           91 FPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        91 ~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      .|.+.+|+|+|-+.|+.++.                    +...+.|+.-++-|+|||.|+
T Consensus       128 ~~~~~fDvI~CRNVLiYf~~--------------------~~~~~vl~~l~~~L~pGG~L~  168 (193)
T d1af7a2         128 NVPGPFDAIFCRNVMIYFDK--------------------TTQEDILRRFVPLLKPDGLLF  168 (193)
T ss_dssp             CCCCCEEEEEECSSGGGSCH--------------------HHHHHHHHHHGGGEEEEEEEE
T ss_pred             CCCCCccEEEeehhHHhcCH--------------------HHHHHHHHHHHHHhCCCcEEE
Confidence            34578999999999999665                    124567788899999999875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0024  Score=53.99  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=31.9

Q ss_pred             ccccccCCCCcccEEE-----eccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEE
Q 045960           85 SFYTRLFPHNFLDFVY-----SSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVL  152 (300)
Q Consensus        85 SFy~~l~P~~sv~~~~-----Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl  152 (300)
                      .....-+|++++|.++     +..+++.                      ..|...||+.-.+=|||||+|++
T Consensus       111 ~~~~~~~~~~~fD~i~fD~~~~~~~~~~----------------------~~~~~~~~~~~~r~LkpGG~~~~  161 (229)
T d1zx0a1         111 EDVAPTLPDGHFDGILYDTYPLSEETWH----------------------THQFNFIKNHAFRLLKPGGVLTY  161 (229)
T ss_dssp             HHHGGGSCTTCEEEEEECCCCCBGGGTT----------------------THHHHHHHHTHHHHEEEEEEEEE
T ss_pred             cccccccccccccceeeccccccccccc----------------------ccCHHHHHHHHHHHcCCCcEEEE
Confidence            3344457888888887     3333333                      23467788888899999999875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.004  Score=57.78  Aligned_cols=22  Identities=9%  Similarity=0.064  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhhccCceeEEE
Q 045960          132 DFSTFLKFRSEELKSQGRMVLT  153 (300)
Q Consensus       132 D~~~fL~~Ra~EL~~GG~~vl~  153 (300)
                      |+...|+...+.|||||++|..
T Consensus       311 ~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         311 DLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEES
T ss_pred             HHHHHHHHHHHhcCCCcEEEEe
Confidence            4677788899999999998763

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.64  E-value=0.017  Score=48.94  Aligned_cols=35  Identities=23%  Similarity=0.110  Sum_probs=25.7

Q ss_pred             CCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960           92 PHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus        92 P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      +...+|.++...++++   +|.                     .+    -+-|+|||+||+-+
T Consensus       131 ~~~pfD~Iiv~~a~~~---ip~---------------------~l----~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         131 EEKPYDRVVVWATAPT---LLC---------------------KP----YEQLKEGGIMILPI  165 (224)
T ss_dssp             GGCCEEEEEESSBBSS---CCH---------------------HH----HHTEEEEEEEEEEE
T ss_pred             hhhhHHHHHhhcchhh---hhH---------------------HH----HHhcCCCCEEEEEE
Confidence            3466999999999876   663                     11    13499999999865

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=95.39  E-value=0.029  Score=48.62  Aligned_cols=20  Identities=25%  Similarity=0.296  Sum_probs=15.7

Q ss_pred             HHHHHHHhhccCceeEEEEe
Q 045960          136 FLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       136 fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +|+.-.+-|||||++++.++
T Consensus       186 ~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         186 YIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             THHHHHHHEEEEEEEEEEES
T ss_pred             HHHHHHhhcCCCCEEEEEeC
Confidence            45556788999999998763

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.029  Score=50.16  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=16.9

Q ss_pred             EEEeeCCCCCcccHHHHHHH
Q 045960            3 RFADLGCSSGPNALLPTWEA   22 (300)
Q Consensus         3 ~iaD~Gcs~G~Nsl~~~~~i   22 (300)
                      +|+|.||++|..|+.+...+
T Consensus       101 rVLE~GtGsG~lt~~LAr~v  120 (324)
T d2b25a1         101 TVLEAGSGSGGMSLFLSKAV  120 (324)
T ss_dssp             EEEEECCTTSHHHHHHHHHH
T ss_pred             EEEEecccccHHHHHHHHHh
Confidence            79999999999998766544

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.032  Score=48.70  Aligned_cols=118  Identities=14%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|+||++|.-++.+..               ..|..+|+..|.-..=.+..=       ..... .+  ..++  ..
T Consensus       110 ~~vlDlGtGSG~I~i~la~---------------~~p~~~v~avDis~~Al~~A~-------~Na~~-~~--~~~v--~~  162 (274)
T d2b3ta1         110 CRILDLGTGTGAIALALAS---------------ERPDCEIIAVDRMPDAVSLAQ-------RNAQH-LA--IKNI--HI  162 (274)
T ss_dssp             CEEEEETCTTSHHHHHHHH---------------HCTTSEEEEECSSHHHHHHHH-------HHHHH-HT--CCSE--EE
T ss_pred             cceeeeehhhhHHHHHHHh---------------hCCcceeeeccchhHHHhHHH-------HHHHH-hC--cccc--ee
Confidence            5799999999998775543               124578888884221111110       11111 11  1233  33


Q ss_pred             cCCccccccCCCCcccEEEeccc----------cccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeE
Q 045960           82 SPGSFYTRLFPHNFLDFVYSSYA----------LHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMV  151 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss~a----------lHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~v  151 (300)
                      +-++++.. +|.+.+|+++|+=-          -+++..-|.......       ..--..+..+++.=.+=|+|||.++
T Consensus       163 ~~~d~~~~-~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g-------~dGl~~~~~i~~~a~~~L~~~G~l~  234 (274)
T d2b3ta1         163 LQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAA-------DSGMADIVHIIEQSRNALVSGGFLL  234 (274)
T ss_dssp             ECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCH-------HHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred             eecccccc-cCCCceeEEEecchhhhhhhhcccccccccchhhhcccc-------cccchHHHHHHHHHHHhcCCCCEEE
Confidence            55777775 46789999999811          012222232111100       0112335677777778899999999


Q ss_pred             EEE
Q 045960          152 LTL  154 (300)
Q Consensus       152 l~~  154 (300)
                      +.+
T Consensus       235 lEi  237 (274)
T d2b3ta1         235 LEH  237 (274)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            986

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.95  E-value=0.11  Score=43.67  Aligned_cols=44  Identities=18%  Similarity=0.184  Sum_probs=32.7

Q ss_pred             CccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           84 GSFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        84 gSFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      |..+.-..+...+|.++...+++   ++|+.                         -.+-|+|||+||+.+.
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~---~~p~~-------------------------l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAP---DTPTE-------------------------LINQLASGGRLIVPVG  191 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBS---SCCHH-------------------------HHHTEEEEEEEEEEES
T ss_pred             cccccccccccceeeEEEEeech---hchHH-------------------------HHHhcCCCcEEEEEEe
Confidence            55556666778899999999975   56631                         1357999999988765

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.63  E-value=0.19  Score=41.94  Aligned_cols=45  Identities=16%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             ccccccCCCCcccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           85 SFYTRLFPHNFLDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        85 SFy~~l~P~~sv~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      .-+.-..+...+|.++...+++.   +|.                     .++    +-|+|||+||+-+...
T Consensus       135 d~~~g~~~~~pfD~Iiv~~a~~~---ip~---------------------~l~----~qL~~gGrLv~pv~~~  179 (215)
T d1jg1a_         135 DGSKGFPPKAPYDVIIVTAGAPK---IPE---------------------PLI----EQLKIGGKLIIPVGSY  179 (215)
T ss_dssp             CGGGCCGGGCCEEEEEECSBBSS---CCH---------------------HHH----HTEEEEEEEEEEECSS
T ss_pred             ccccCCcccCcceeEEeeccccc---CCH---------------------HHH----HhcCCCCEEEEEEccC
Confidence            33444566777999999999976   673                     122    3499999999877543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=88.92  E-value=3.1  Score=35.93  Aligned_cols=27  Identities=11%  Similarity=-0.002  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHHHHhhccCceeEEEE
Q 045960          128 QFESDFSTFLKFRSEELKSQGRMVLTL  154 (300)
Q Consensus       128 q~~~D~~~fL~~Ra~EL~~GG~~vl~~  154 (300)
                      ...+++..++..-.+=|+|||.|++..
T Consensus       235 ~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         235 RAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            346677888988889999999988765

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.52  E-value=0.34  Score=39.48  Aligned_cols=42  Identities=29%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             ccEEEeccccccccCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960           96 LDFVYSSYALHWLSRMPKGQGNESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus        96 v~~~~Ss~alHWLS~vP~~~~n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      +|+|+||+-+-+..+                  --......|..+.+-|+|||+|++.-.
T Consensus       101 ~DlGvSs~Qld~~~r------------------~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2         101 MDLGVSTYQLKGENR------------------ELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             EECSCCHHHHHTSHT------------------HHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             eccchhHhhhhhhhc------------------cchhHHHHHHHHHHhcCCCCeeeeecc
Confidence            566677766655333                  123357789999999999999987653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.67  E-value=1.6  Score=37.99  Aligned_cols=27  Identities=11%  Similarity=-0.117  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHhhccCceeEEEEe
Q 045960          129 FESDFSTFLKFRSEELKSQGRMVLTLL  155 (300)
Q Consensus       129 ~~~D~~~fL~~Ra~EL~~GG~~vl~~~  155 (300)
                      ..+++..++..-.+=|+|||+|++...
T Consensus       238 ~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         238 GLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             HHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            356778888888889999999988763

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=0.74  Score=38.77  Aligned_cols=19  Identities=21%  Similarity=-0.026  Sum_probs=16.3

Q ss_pred             eEEEeeCCCCCcccHHHHH
Q 045960            2 IRFADLGCSSGPNALLPTW   20 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~   20 (300)
                      ++|.|+||++|.-++.+..
T Consensus        63 ~~~LDiGtGsg~I~~~l~~   81 (250)
T d2h00a1          63 RRGIDIGTGASCIYPLLGA   81 (250)
T ss_dssp             CEEEEESCTTTTHHHHHHH
T ss_pred             ceEEEeCCCchHHHHHHHH
Confidence            6899999999998887654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=84.23  E-value=0.62  Score=40.27  Aligned_cols=124  Identities=11%  Similarity=-0.004  Sum_probs=62.0

Q ss_pred             eEEEeeCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHhhcChhhHHHHhhhcCCCCCceeeee
Q 045960            2 IRFADLGCSSGPNALLPTWEAIDSLDKICHRLNRKPPVLHSFLNDLPRSDFNTVFKSLPSFYERLRTEKGHEFGSCFVAA   81 (300)
Q Consensus         2 ~~iaD~Gcs~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~v~~nDlP~NDFn~Lf~~l~~~~~~~~~~~~~~~~~~f~~~   81 (300)
                      .+|.|.||++|.-.+.++..    +.++      ..++++++..|.-.   ..+ + +-..  ..... +.  ...+.  
T Consensus       119 ~~vlDp~~GsG~~l~~~~~~----l~~~------~~~~~~~~g~di~~---~~~-~-~a~~--~~~~~-~~--~~~~~--  176 (328)
T d2f8la1         119 VSILDPACGTANLLTTVINQ----LELK------GDVDVHASGVDVDD---LLI-S-LALV--GADLQ-RQ--KMTLL--  176 (328)
T ss_dssp             EEEEETTCTTSHHHHHHHHH----HHTT------SSCEEEEEEEESCH---HHH-H-HHHH--HHHHH-TC--CCEEE--
T ss_pred             CEEEeCCCCcchhHHHHHHH----HHhc------cCccceEEEecccH---HHH-H-HHHH--HHHHh-hh--hhhhh--
Confidence            57999999999765544433    3222      34568888888521   111 1 1100  00010 11  11111  


Q ss_pred             cCCccccccCCCCcccEEEec--cccccccCCCCCCC--CCHHHHHHHHHhHHHHHHHHHHHHHHhhccCceeEEEEeec
Q 045960           82 SPGSFYTRLFPHNFLDFVYSS--YALHWLSRMPKGQG--NESDVHKAFLNQFESDFSTFLKFRSEELKSQGRMVLTLLYN  157 (300)
Q Consensus        82 vpgSFy~~l~P~~sv~~~~Ss--~alHWLS~vP~~~~--n~~~v~~ay~~q~~~D~~~fL~~Ra~EL~~GG~~vl~~~g~  157 (300)
                      . +.+. ...|...+|+|+++  |..+|....-....  ......        .-...|+..=.+-|+|||++++.++..
T Consensus       177 ~-~d~~-~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~--------~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         177 H-QDGL-ANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHS--------FAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             E-SCTT-SCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCE--------EHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             c-cccc-cccccccccccccCCCCCCCccchhhhhcchhcccCcc--------hHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            1 1222 24567789999998  33333211000000  000000        012457777778899999999998743