Citrus Sinensis ID: 045968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
Protein Sequence
MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPYS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcccccccccEEEEcccccccccccccccccEEEEcccccccccccccccccccEEEccccccccccccHHHcccccccEEEcccccccccccccHHHHHHHHHHHHHccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEEEEEcccccccccccccccccccEEHHHHcccccHHHHHHHccccHHHHHHHHcccHHHHHHHccccccccccEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccEEcccccccccccccccccccccccEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEEEEHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHEEEEcccccHHcccccccccccEEEEEccccccccccHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHEccccccHHHccHHHHHHHHHHHEEccccHHHHHccHHHHHHHHHccEEEEccccccccccccccccccccccHHHHHHHHHHHHcEcEEEEccHHHHHHHHccHHHHHHHHHHHccccccEEEEEEcccccccccccccccccEEEEEEcccccccccHHHEcccccEEEEcccHcHHHHcccccccccccccccccccHHHHEEEEcccHHHHHHccccccccccEEEEEcccccHcccccccccccccEEEEEccHHHHHHcccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MHDVIRDMAIWITCEIEKEKRNFLVRAgaglkeapdvkgweNVRRLSLMQNQIetvsevptcphlLTLFLDFNQELEMIADGFFQLMPSLKVlkmsncgqgrlklpvgmsvlgsslelldisctGITELPEELKKLVNLkclnlrwtgalIRIPRQLISKFSRLRVLRMFAIGydrfheapedsvlfgGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCldgfeleelkIDYTEIVRKrrepfvfrnlHRVTMVLCHKlkdvtflvfapnlksldldgcDAMEEIIsvgkfaetpemmghispfenlqrlnledlpnlesiywkplpftrLKEMAVLgcdqleklpvdsnsakeRKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPYS
Flexible Loop (DISEMBL)
MHDVIRDMAIWITCEIEKEKRNFLVRAgaglkeapdvkgwenVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRwtgaliriprqliskfsRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLdgfeleelkidyteivrkrrepfvfrnlHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQleklpvdsnsakerkFVIRGEEDWWNRLQWEDEATQIAFRSCFQPYS
Low Complexity Region (SEG)
MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEElkklvnlkclnlRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQellglkylevlelslGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPYS
Disordered region (IsUnstruct)
***VIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVD****KERKFVIRGEEDWWNRLQWEDEATQIAFRSCF****
Disordered Region (DISOPRED)
MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGK************PFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLP************IRGEEDWWNRLQWEDEATQIAFRSCFQPY*
Disordered Region (DISEMBL)
MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPYS
Disordered Region (DISPRO)
MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAE***MMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQPYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	402	2.2.26 [Sep-21-2011]
O64973	889	Disease resistance protei	yes	no	0.920	0.416	0.366	3e-51
Q9FLB4	874	Putative disease resistan	no	no	0.930	0.427	0.363	1e-50
Q9C8T9	898	Putative disease resistan	no	no	0.935	0.418	0.358	7e-50
Q8RXS5	888	Probable disease resistan	no	no	0.940	0.425	0.350	3e-48
Q9SH22	884	Probable disease resistan	no	no	0.932	0.424	0.346	4e-47
P60838	894	Probable disease resistan	no	no	0.940	0.422	0.348	5e-47
Q8L3R3	885	Disease resistance protei	no	no	0.920	0.418	0.367	4e-46
O23317	719	Probable disease resistan	no	no	0.850	0.475	0.344	4e-46
O82484	892	Putative disease resistan	no	no	0.930	0.419	0.352	2e-45
Q9SI85	893	Probable disease resistan	no	no	0.927	0.417	0.345	3e-45

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 156/426 (36%), Positives = 225/426 (52%), Gaps = 56/426 (13%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+R+MA+WI+ ++ K+K   +VRAG GL+E P VK W  VR++SLM N+IE + +  
Sbjct: 477 MHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSH 536

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
            C  L TLFL  N  +++ A+ FF+ MP L VL +S   Q   +LP  +S L +SL   +
Sbjct: 537 ECAALTTLFLQKNDVVKISAE-FFRCMPHLVVLDLSE-NQSLNELPEEISEL-ASLRYFN 593

Query: 121 ISCTGITELPE---ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177
           +S T I +LP     LKKL++L   ++   G+++      IS    LR L +        
Sbjct: 594 LSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILG-----ISNLWNLRTLGL-------- 640

Query: 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCI-------- 229
                DS L      L++EL  L++LEV+ L + S    + LL S +L  CI        
Sbjct: 641 ----RDSRLLLDMS-LVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYL 695

Query: 230 ----------------RSLCLDGFELEELKIDYTEIVRKR-REPFV--FRNLHRVTMVLC 270
                           R L +    + E+KI+ T     R + P    F NL RV +  C
Sbjct: 696 KEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKC 755

Query: 271 HKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330
           H LKD+T+L+FAPNL  L++     +E+IIS  K     E    I PF  L+ L+L +L 
Sbjct: 756 HGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEK---AEEHSATIVPFRKLETLHLFELR 812

Query: 331 NLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNS--AKERKFVIRGEEDWWNRLQWEDE 388
            L+ IY K L F  LK + V  C++L KLP+DS S  A E   +  GE +W  R++WED+
Sbjct: 813 GLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQ 872

Query: 389 ATQIAF 394
           ATQ+ F
Sbjct: 873 ATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 156/429 (36%), Positives = 221/429 (51%), Gaps = 55/429 (12%)

Query: 1   MHDVIRDMAIWIT--CEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE 58
           MHDV+R+MA+WI+  C  +K+K   +V A A L++ P ++  + VRR+SL+ NQIE   E
Sbjct: 463 MHDVVREMALWISSGCGDQKQKNVLVVEANAQLRDIPKIEDQKAVRRMSLIYNQIEEACE 522

Query: 59  VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL 118
              CP L TL L  N+ L  I+  F   +P L VL +S      ++LP   S L  SL  
Sbjct: 523 SLHCPKLETLLLRDNR-LRKISREFLSHVPILMVLDLS-LNPNLIELP-SFSPL-YSLRF 578

Query: 119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH 178
           L++SCTGIT LP+ L  L NL  LNL  T  L RI    I     L VL+++A G D   
Sbjct: 579 LNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYE--IHDLPNLEVLKLYASGIDITD 636

Query: 179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLD--- 235
           +             L++++  +K+L +L ++L +   L+I L   +  S    L LD   
Sbjct: 637 K-------------LVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQS 683

Query: 236 --------------------------GFELEELKIDYTEIVRKR-REPFVFRNLHRVTMV 268
                                       E+E    + +EIV  R R    F NL +V + 
Sbjct: 684 YYQSLKVPLATISSSRFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLD 743

Query: 269 LCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVG---KFAETPEMMGHISPFENLQRLN 325
            C  LKD+T+LVFAP+L +L +     +E IIS     +  +T E+ G I PF  L+ L 
Sbjct: 744 NCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVI-PFRELEFLT 802

Query: 326 LEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQW 385
           L +L  L+SIY  PL F +LKE+ +  C +L KLP+DS SA ++  VI  EE+W   LQW
Sbjct: 803 LRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQW 862

Query: 386 EDEATQIAF 394
           ED AT+  F
Sbjct: 863 EDVATKERF 871

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  198 bits (503), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 154/429 (35%), Positives = 224/429 (52%), Gaps = 53/429 (12%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           +HDV+R+MA+WI  ++ K+   F+VRA  GL+E   V+ W  VRR+SLM+N I  +    
Sbjct: 475 LHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSLMKNNIAHLDGRL 534

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELL 119
            C  L TL L  +  LE I+  FF  MP L VL +S  G   L +LP G+S L  SL+ L
Sbjct: 535 DCMELTTLLLQ-STHLEKISSEFFNSMPKLAVLDLS--GNYYLSELPNGISEL-VSLQYL 590

Query: 120 DISCTGITELP---EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR 176
           ++S TGI  LP   +ELKKL++L        G+++      IS    L+VL++    Y  
Sbjct: 591 NLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG-----ISCLHNLKVLKLSGSSYAW 645

Query: 177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYH-ALQILLSSNKLKSCIR----- 230
             +              ++EL  L++LEVL  ++          LSS++L SCIR     
Sbjct: 646 DLDT-------------VKELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKIS 692

Query: 231 ------------SLCLDGFELEELKIDYTEIVR-KRREPFVFRNLHRVTMVLCHKLKDVT 277
                       SL +    L+E  I++      K      F +L  V +  C +L+++T
Sbjct: 693 NNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIKMGRICSFSSLIEVNLSNCRRLRELT 752

Query: 278 FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYW 337
           FL+FAPNLK L +   + +E+II+  K A   E  G I PF  L  L+L +L  L++IYW
Sbjct: 753 FLMFAPNLKRLHVVSSNQLEDIINKEK-AHDGEKSG-IVPFPKLNELHLYNLRELKNIYW 810

Query: 338 KPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERK---FVIRGEEDWWNRLQWEDEATQIAF 394
            PLPF  L+++ V+GC  L+KLP+DS S K       +   E +W  R++WEDEAT+  F
Sbjct: 811 SPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRF 870

Query: 395 ---RSCFQP 400
              RS F  
Sbjct: 871 LANRSSFSS 879

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 150/428 (35%), Positives = 226/428 (52%), Gaps = 50/428 (11%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+R+MA+WI  +  K+K NF+V+AG   +  P+++ W+  RR+SLM N IE++ + P
Sbjct: 471 MHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAP 530

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
             P L+TL L  N  L  I+  FF+LMP L VL +S     R  LP  +S    SL+ L 
Sbjct: 531 ESPQLITLLLRKNF-LGHISSSFFRLMPMLVVLDLSMNRDLR-HLPNEISEC-VSLQYLS 587

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S T I   P  L +L  L  LNL +T  +  I    IS  + L+VLR+F  G+      
Sbjct: 588 LSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRLFVSGF------ 639

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--- 237
           PED         ++ EL  L+ L+ L ++LG    L+  LS+ +L SC R+L ++     
Sbjct: 640 PEDP-------CVLNELQLLENLQTLTITLGLASILEQFLSNQRLASCTRALRIENLNPQ 692

Query: 238 -----------ELEELKI---DYTEIVRKRREPFV----------FRNLHRVTMVLCHKL 273
                       L+EL     D  EI  KR E  +          F NL +V++  C +L
Sbjct: 693 SSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRL 752

Query: 274 KDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE 333
           +D+T+L+FAPNL  L +     ++E+I+  K AE   ++    PF+ L+ L LE++  L+
Sbjct: 753 RDLTWLIFAPNLTVLRVISASDLKEVINKEK-AEQQNLI----PFQELKELRLENVQMLK 807

Query: 334 SIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIA 393
            I+  PLPF  L+++ V GC +L KLP++  S      VI   + W   L+WEDEAT+  
Sbjct: 808 HIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKAR 867

Query: 394 FRSCFQPY 401
           F    + +
Sbjct: 868 FLPTLKAF 875

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 145/419 (34%), Positives = 217/419 (51%), Gaps = 44/419 (10%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+R+MA+WI  E+  +K  F+VRAG G++E P +K W  VRR+SLM+N+I  +    
Sbjct: 475 MHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSY 534

Query: 61  TCPHLLTLFL------DFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGS 114
            C  L TL L          +L+ I+  FF  MP L VL +S+  +   +LP  +S L  
Sbjct: 535 ECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSH-NKSLFELPEEISNL-V 592

Query: 115 SLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY 174
           SL+ L++  T I+ LP+ +++L  +  LNL +T  L  I    IS    L+VL++F    
Sbjct: 593 SLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITG--ISSLHNLKVLKLFR--- 647

Query: 175 DRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS--------------LGSYHALQILL 220
                 P D          ++EL  L++LE+L  +              L     L+I  
Sbjct: 648 ---SRLPWDL-------NTVKELETLEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYG 697

Query: 221 SS-NKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFV-FRNLHRVTMVLCHKLKDVTF 278
           SS + L   + SL +   +L E +I    I   +      F +L  V +  C  L+++TF
Sbjct: 698 SSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTF 757

Query: 279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK 338
           L+FAP ++SL +     +E+II+  K  E  E    I PF  L  L L DLP L+ IYW+
Sbjct: 758 LIFAPKIRSLSVWHAKDLEDIINEEKACEGEE--SGILPFPELNFLTLHDLPKLKKIYWR 815

Query: 339 PLPFTRLKEMAVLGCDQLEKLPVDSNSAK--ERKFVIRGEED-WWNRLQWEDEATQIAF 394
           PLPF  L+E+ +  C  L KLP+DS S K  E   +IR ++  W+  ++W DEAT+  F
Sbjct: 816 PLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRF 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  188 bits (478), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 149/428 (34%), Positives = 220/428 (51%), Gaps = 50/428 (11%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+R+MA+WI  ++ + K   +V+ G GL+E P VK W +VRR+SLM+N+IE +S  P
Sbjct: 476 MHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSP 535

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
            C  L TLFL  N  L  I+D FF+ +P L VL +S     R KLP  +S L  SL  LD
Sbjct: 536 ECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLR-KLPNQISKL-VSLRYLD 593

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S T I  LP  L++L  L+ L L +   L  I         R   L    +  D     
Sbjct: 594 LSWTYIKRLPVGLQELKKLRYLRLDYMKRLKSISGISNISSLRKLQLLQSKMSLDMSLVE 653

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELE 240
               +               ++LEVL +S+ S   ++ LL++ +L  C++ L L G + E
Sbjct: 654 ELQLL---------------EHLEVLNISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEE 698

Query: 241 ------------------------ELKIDYTEI-VRKRREPFV--FRNLHRVTMVLCHKL 273
                                   E+KI+   + +   R P      NL  V +  C  L
Sbjct: 699 SSGVLTLPDMDNLNKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGL 758

Query: 274 KDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE 333
           KD+T+L+FAPNL SL++   + +E II+     E    M  I PF+ L+ L L +L  L 
Sbjct: 759 KDLTWLLFAPNLTSLEVLDSELVEGIIN----QEKAMTMSGIIPFQKLESLRLHNLAMLR 814

Query: 334 SIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSA-KERKFVIR-GEEDWWNRLQWEDEATQ 391
           SIYW+PL F  LK + +  C +L KLP+DS  A ++ + VI+  EE+W  R++W++EAT+
Sbjct: 815 SIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATR 874

Query: 392 IAFRSCFQ 399
           + F   F+
Sbjct: 875 LRFLPFFK 882

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 157/427 (36%), Positives = 217/427 (50%), Gaps = 57/427 (13%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHD++R+MA+WI  ++ K K   +V+AG GL E P+V+ W  V+R+SLM N  E +   P
Sbjct: 476 MHDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSP 535

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
            C  L+TLFL  N +L  I+  FF+ MPSL VL +S       +LP  +S L  SL+ LD
Sbjct: 536 ECVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSE-NHSLSELPEEISEL-VSLQYLD 593

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S T I  LP  L +L  L  L L  T  L     + IS  S L  LR   +   R  + 
Sbjct: 594 LSGTYIERLPHGLHELRKLVHLKLERTRRL-----ESISGISYLSSLRTLRL---RDSKT 645

Query: 181 PEDSVLFGG-------------------GEVL--------IQELLGLKYLEVLELSLGSY 213
             D+ L                      GE+         IQ +    + E  E S+G  
Sbjct: 646 TLDTGLMKELQLLEHLELITTDISSGLVGELFCYPRVGRCIQHIYIRDHWERPEESVGV- 704

Query: 214 HALQILLSSNKLKSCIRSLCLDGFE---LEELKIDYTEIVRKRREPFVFRNLHRVTMVLC 270
               ++L +      I +LC        + E+ I+ T   +    P  F NL  V +  C
Sbjct: 705 ----LVLPA------IHNLCYISIWNCWMWEIMIEKTPWKKNLTNPN-FSNLSNVRIEGC 753

Query: 271 HKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330
             LKD+T+L+FAPNL +L + GC  +E+IIS  K A   E    I PF+ L+ LNL  L 
Sbjct: 754 DGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLEK--EILPFQKLECLNLYQLS 811

Query: 331 NLESIYWKPLPFTRLKEMAVL-GCDQLEKLPVDSNS-AKERKFVIR-GEEDWWNRLQWED 387
            L+SIYW  LPF RL+ + +L  C +L KLP+DS S  K  +FVI+  E+ W  R++WED
Sbjct: 812 ELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIERVEWED 871

Query: 388 EATQIAF 394
           EATQ  F
Sbjct: 872 EATQYRF 878

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score =  185 bits (470), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 139/404 (34%), Positives = 208/404 (51%), Gaps = 62/404 (15%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+R+MA+WI+ ++ K K   +VRAG GL   P+VK W  VRR+SLM+N++E +   P
Sbjct: 359 MHDVVREMALWISSDLGKHKDQCIVRAGVGLHAVPEVKNWRAVRRMSLMKNELEKILGCP 418

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
           TCP L TL L  N +L  I+  FF+ MP+L VL +S        LP  +S     +E  +
Sbjct: 419 TCPQLTTLLLQKNHKLVNISGEFFRFMPNLVVLDLS-WNSSLTGLPKKIS----EVETTN 473

Query: 121 ISCTGITELPEE---LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177
            S  G+ E   E   + KL++LK L L+ +   + +                        
Sbjct: 474 TSEFGVHEEFGEYAGVSKLLSLKTLRLQKSKKALDVNSA--------------------- 512

Query: 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSY---HALQILLSSNKLKSCIRSLCL 234
                            +EL  L+++EVL + + S     + +IL   +     IR + +
Sbjct: 513 -----------------KELQLLEHIEVLTIDIFSKVEEESFKILTFPSMCN--IRRIGI 553

Query: 235 DGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCD 294
               ++E+K++        R    F +L +V +  C  LK++T+L+FAPNL  LD    +
Sbjct: 554 WKCGMKEIKVEM-------RTSSCFSSLSKVVIGQCDGLKELTWLLFAPNLTYLDARFAE 606

Query: 295 AMEEIISVGKFAE-TPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVL-G 352
            +E+IIS  K A  T E    I PF+ L+ L+L DLP L+SIYW PL F RL E+AV   
Sbjct: 607 QLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYWSPLSFPRLSELAVQEH 666

Query: 353 CDQLEKLPVDSNS--AKERKFVIRGEEDWWNRLQWEDEATQIAF 394
           C +L+KLP++S S  A     V  GE  W   ++WED+AT++ F
Sbjct: 667 CPKLKKLPLNSKSGTAGVELVVKYGENKWLEGVEWEDKATELRF 710

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 221/428 (51%), Gaps = 54/428 (12%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+R+MA+W   ++ K K   +V+AG+GL++ P V+ W  VRRLSLM N IE +S  P
Sbjct: 474 MHDVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISGSP 533

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
            CP L TLFL  N+ L  I+  FF+ M  L VL +S   Q    LP  +S L  +L  LD
Sbjct: 534 ECPELTTLFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLD-GLPEQISEL-VALRYLD 591

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRV--LRMFAIGYDRFH 178
           +S T I  LP  L+ L  L  LNL     L  I    ISK S LR   LR   I  D   
Sbjct: 592 LSHTNIEGLPACLQDLKTLIHLNLECMRRLGSIAG--ISKLSSLRTLGLRNSNIMLDVMS 649

Query: 179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSC---------- 228
                          ++EL  L++LE+L + + S   L+ ++ +  L +C          
Sbjct: 650 ---------------VKELHLLEHLEILTIDIVSTMVLEQMIDAGTLMNCMQEVSIRCLI 694

Query: 229 ----------------IRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHK 272
                           +RSL +   E+ E++I+          P  F NL +V + +C  
Sbjct: 695 YDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWNTNPTSPCFF-NLSQVIIHVCSS 753

Query: 273 LKDVTFLVFAPNLKSLDLDGCDAMEEIIS----VGKFAETPEMMGHISPFENLQRLNLED 328
           LKD+T+L+FAPN+  L ++  + ++E+IS     G   E  + +  I PF+ LQ L+L  
Sbjct: 754 LKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSS 813

Query: 329 LPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAK-ERKFVIRGEE-DWWNRLQWE 386
           LP L+SIYW  L F  L  + V  C +L KLP+DS +    +KFV++ +E +W   ++W+
Sbjct: 814 LPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYKETEWIESVEWK 873

Query: 387 DEATQIAF 394
           DEAT++ F
Sbjct: 874 DEATKLHF 881

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  182 bits (463), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 146/423 (34%), Positives = 219/423 (51%), Gaps = 50/423 (11%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+R+MA+WI  E+  +K  F+VRAG G++E P VK W  VRR+SLM N+I  +    
Sbjct: 475 MHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSY 534

Query: 61  TCPHLLTLFLDFNQ--------ELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVL 112
            C  L TL L   +        E++ I+  FF  MP L VL +S+  Q   +LP  +S L
Sbjct: 535 ECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSH-NQSLFELPEEISNL 593

Query: 113 GSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172
             SL+ L++S TGI  L + +++L  +  LNL  T  L  I    IS    L+VL+++  
Sbjct: 594 -VSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDG--ISSLHNLKVLKLYG- 649

Query: 173 GYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIR-- 230
                   P D          ++EL  L++LE+L  ++    A Q  LSS++L S  R  
Sbjct: 650 -----SRLPWDL-------NTVKELETLEHLEILTTTIDP-RAKQ-FLSSHRLMSRSRLL 695

Query: 231 ---------------SLCLDGFELEELKIDYTEIVRKRREPFV-FRNLHRVTMVLCHKLK 274
                          SL +   +L E +I    I   +      F +L  VT+  C  L+
Sbjct: 696 QIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLR 755

Query: 275 DVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES 334
           ++TFL+FAP L+SL +     +E+II+  K  E  +    I PF  L+ LNL+DLP L++
Sbjct: 756 ELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGED--SGIVPFPELKYLNLDDLPKLKN 813

Query: 335 IYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERK---FVIRGEEDWWNRLQWEDEATQ 391
           IY +PLPF  L+++ +  C  L KLP+DS S K+ +    +   +  W   ++W DEAT+
Sbjct: 814 IYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATK 873

Query: 392 IAF 394
             F
Sbjct: 874 KRF 876

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
24461863	889	NBS-LRR type disease resistance protein	0.985	0.445	0.724	1e-164
24461866	890	NBS-LRR type disease resistance protein	0.970	0.438	0.566	1e-124
24461865	892	NBS-LRR type disease resistance protein	0.972	0.438	0.567	1e-120
24461861	890	NBS-LRR type disease resistance protein	0.962	0.434	0.56	1e-111
24461864	899	NBS-LRR type disease resistance protein	0.985	0.440	0.530	1e-109
359482672	905	PREDICTED: probable disease resistance p	0.982	0.436	0.451	2e-84
225442867	893	PREDICTED: probable disease resistance p	0.952	0.428	0.449	3e-83
147852651	882	hypothetical protein VITISV_017542 [Viti	0.955	0.435	0.448	3e-81
359482674	991	PREDICTED: probable disease resistance p	0.932	0.378	0.435	5e-80
297741963	721	unnamed protein product [Vitis vinifera]	0.960	0.535	0.421	5e-77

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 311/429 (72%), Positives = 339/429 (79%), Gaps = 33/429 (7%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+R MA+WI CEIE+EKRNFLVRAGAGL++AP VK WENVRRLSLMQN I+ +SEVP
Sbjct: 465 MHDVVRYMALWIVCEIEEEKRNFLVRAGAGLEQAPAVKEWENVRRLSLMQNDIKILSEVP 524

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGR-LKLPVGMSVLGSSLELL 119
           TCP L TLFL  N  L+ I DGFF+ MPSLKVLKMS+CG  + LKLP+GMS+LG SLELL
Sbjct: 525 TCPDLHTLFLASNNNLQRITDGFFKFMPSLKVLKMSHCGDLKVLKLPLGMSMLG-SLELL 583

Query: 120 DISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHE 179
           DIS T I ELPEELK LVNLKCLNLRW   L +IPRQLIS  SRL VLRMFA G     E
Sbjct: 584 DISQTSIGELPEELKLLVNLKCLNLRWATWLSKIPRQLISNSSRLHVLRMFATGCSH-SE 642

Query: 180 APEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-- 237
           A EDSVLFGGGEVLIQELLGLKYLEVLEL+L S HALQ+  SSNKLKSCIRSL LD    
Sbjct: 643 ASEDSVLFGGGEVLIQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCIRSLLLDEVRG 702

Query: 238 -------------------------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHK 272
                                    E+EELKIDYTEIVRKRREPFVF +LHRVT+  C K
Sbjct: 703 TKSIIDATAFADLNHLNELRIDSVAEVEELKIDYTEIVRKRREPFVFGSLHRVTLGQCLK 762

Query: 273 LKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNL 332
           LKD+TFLVFAPNLKSL L  C AMEEIISVGKFAE PE+MGHISPFENLQRL+L DLP L
Sbjct: 763 LKDLTFLVFAPNLKSLQLLNCRAMEEIISVGKFAEVPEVMGHISPFENLQRLHLFDLPRL 822

Query: 333 ESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQI 392
           +SIYWKPLPFT LKEM V GC+QL+KLP+DSNSA   KFVIRGE + WNRLQWED+ATQI
Sbjct: 823 KSIYWKPLPFTHLKEMRVHGCNQLKKLPLDSNSA---KFVIRGEAEGWNRLQWEDDATQI 879

Query: 393 AFRSCFQPY 401
           AFRSCFQPY
Sbjct: 880 AFRSCFQPY 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/424 (56%), Positives = 296/424 (69%), Gaps = 34/424 (8%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDV+RDMA+WI C IEKEK NFLV AG GL EAPDV GWE  RRLSLM NQI  +SEV 
Sbjct: 473 MHDVVRDMALWIACAIEKEKDNFLVYAGVGLIEAPDVSGWEKARRLSLMHNQITNLSEVA 532

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
           TCPHLLTLFL+ N EL+MI + FF+ MPSLKVL +++       LP G+S L  SL+ LD
Sbjct: 533 TCPHLLTLFLNEN-ELQMIHNDFFRFMPSLKVLNLAD--SSLTNLPEGISKL-VSLQHLD 588

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S + I ELP ELK LVNLKCLNL +T +L  IPRQLIS  SRL VLRMFA  +  F  A
Sbjct: 589 LSKSSIEELPLELKALVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAASHSAFDRA 648

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--- 237
            EDS+LFGGGE++++ELLGLKYLEV+  +L S H LQ  LSS+KL+SC R+L L  F   
Sbjct: 649 SEDSILFGGGELIVEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSCTRALLLQCFNDS 708

Query: 238 -----------------------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK 274
                                  +LEELK+DYT  V++    FVF +L +V ++ C KLK
Sbjct: 709 TSLEVSALADLKQLNRLWITECKKLEELKMDYTREVQQ----FVFHSLKKVEILACSKLK 764

Query: 275 DVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES 334
           D+TFLVFAPNL+S++L GC AMEE++S+GKFAE PE++ +++PF  LQ L L    NL+S
Sbjct: 765 DLTFLVFAPNLESIELMGCPAMEEMVSMGKFAEVPEVVANLNPFAKLQNLKLFGATNLKS 824

Query: 335 IYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAF 394
           IYWKPLPF  LK M+   C +L+KLP+DSNSA+ER  VI G   WW +L+W DEAT+ AF
Sbjct: 825 IYWKPLPFPHLKSMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLEWVDEATRNAF 884

Query: 395 RSCF 398
             CF
Sbjct: 885 LPCF 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/425 (56%), Positives = 298/425 (70%), Gaps = 34/425 (8%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDVIRDMA+WI C+IE+EK NF V AG GL EAPDV+GWE  RRLSLMQNQI  +SE+P
Sbjct: 474 MHDVIRDMALWIACDIEREKENFFVYAGVGLVEAPDVRGWEKARRLSLMQNQIRNLSEIP 533

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
           TCPHLLTL L     L  I + FFQ MPSLKVL +S+C     KLPVG+S L  SL+ LD
Sbjct: 534 TCPHLLTLLL-NENNLRKIQNYFFQFMPSLKVLNLSHCE--LTKLPVGISEL-VSLQHLD 589

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S + I E P ELK LVNLKCL+L +T  LI IPRQLIS  SRLRVLRMF   ++ F EA
Sbjct: 590 LSESDIEEFPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMFGASHNAFDEA 649

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE-- 238
            E+S+LFGGGE++++ELLGLK+LEV+ L+L S + LQ  L+S+KL+SC ++L L  F+  
Sbjct: 650 SENSILFGGGELIVEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSCTQALLLQHFKDS 709

Query: 239 ------------------------LEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK 274
                                   LEELK+DY E V++    F FR+L+ V +  C +LK
Sbjct: 710 TSLEVSALADLKQLNRLQIANSVILEELKMDYAEEVQQ----FAFRSLNMVEICNCIQLK 765

Query: 275 DVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES 334
           D+TFLVFAPNLKS+ +  C AMEEI S GKFAE PE+M +++PFE LQ L +    NL+S
Sbjct: 766 DLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKLQNLEVAGARNLKS 825

Query: 335 IYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAF 394
           IYWK LPF  LK M+ L C +L+KLP+DSNSAKERK VI GE +W  +LQWEDEAT+ AF
Sbjct: 826 IYWKSLPFPHLKAMSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQWEDEATRNAF 885

Query: 395 RSCFQ 399
             CF+
Sbjct: 886 LRCFR 890

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/425 (56%), Positives = 292/425 (68%), Gaps = 38/425 (8%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           MHDVIRDMA+W+ C+ EKEK N+LV AGAGL+EAPDV  WE +RRLSLM+NQIE +SEVP
Sbjct: 475 MHDVIRDMALWLACDAEKEKENYLVYAGAGLREAPDVIEWEKLRRLSLMENQIENLSEVP 534

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
           TCPHLLTLFL+ +  L  I   F Q M  LKVL +S    G L LP+G+S L  SLE LD
Sbjct: 535 TCPHLLTLFLNSDDILWRINSDFLQSMLRLKVLNLSRY-MGLLVLPLGISKL-VSLEYLD 592

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S + I+E+PEELK LVNLKCLNL +TG L++IP QLIS FSRL VLRMF   Y  +   
Sbjct: 593 LSTSLISEIPEELKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAYFSYGNY 652

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCL------ 234
           P +SVLFGGGE+L++ELLGLK+LEVL L+LGS  ALQ  L+S+ L+SC R++ L      
Sbjct: 653 PIESVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLTSHMLRSCTRAMLLQDFQGS 712

Query: 235 --------------------DGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK 274
                               D +EL ELKIDY   V++    + F +L    +  C KLK
Sbjct: 713 TSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQR----YGFHSLQSFEVNYCSKLK 768

Query: 275 DVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES 334
           D+T LV  PNLKS+++  C+AMEEIISVG+FA  P      + F  LQ L + +LPNL+S
Sbjct: 769 DLTLLVLIPNLKSIEVTDCEAMEEIISVGEFAGNP------NAFAKLQYLGIGNLPNLKS 822

Query: 335 IYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAF 394
           IYWKPLPF  L+E+ V  C +L+KLP+DSNSAKE K VIRG  +WW  LQWEDEATQ AF
Sbjct: 823 IYWKPLPFPCLEELTVSDCYELKKLPLDSNSAKEHKIVIRGAANWWRNLQWEDEATQNAF 882

Query: 395 RSCFQ 399
            SCFQ
Sbjct: 883 LSCFQ 887

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/424 (53%), Positives = 288/424 (67%), Gaps = 28/424 (6%)

Query: 1   MHDVIRDMAIWITCEIEK------EKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIE 54
           MHDVIRDM +WI C+ EK      +K N+LV  GAGL EAP+V+ WEN +RLSLM+ QI 
Sbjct: 476 MHDVIRDMTLWIACDTEKTEDTEKKKENYLVYEGAGLTEAPNVREWENAKRLSLMETQIR 535

Query: 55  TVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-LPVGMSVLG 113
            +SEVPTC HLLTLFL FN+ELEMI   FF+ MP LKVL +S  G  R+   P+G+SVL 
Sbjct: 536 NLSEVPTCLHLLTLFLVFNEELEMITGDFFKSMPCLKVLNLS--GARRMSSFPLGVSVL- 592

Query: 114 SSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIG 173
            SL+ LD+S T I ELP+EL  L NLK LNL  T  LI IPRQLIS+FS L VLRMF +G
Sbjct: 593 VSLQHLDLSGTAIQELPKELNALENLKSLNLDQTHYLITIPRQLISRFSCLVVLRMFGVG 652

Query: 174 YDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLC 233
               +    DS LF GG++L++ L GLK+LEVL L+L +   LQ +L+S KL+SC ++L 
Sbjct: 653 DWSPNGKRNDSDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSCTQALY 712

Query: 234 LDGFE------------LEEL------KIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKD 275
           L  F+            LE L      + +  E ++  R+PFVF++L ++ +  CH+LK+
Sbjct: 713 LHSFKRSEPLDVSALAGLEHLNRLWIHECEELEELKMARQPFVFQSLEKIQIYGCHRLKN 772

Query: 276 VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI 335
           +TFL+FAPNLKS+++  C AMEEIIS  KFA+ PE+M  I PF  L  L L  L  L+SI
Sbjct: 773 LTFLLFAPNLKSIEVSSCFAMEEIISEVKFADFPEVMPIIKPFAQLYSLRLGGLTVLKSI 832

Query: 336 YWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFR 395
           Y +PLPF  L+++ V  CD+L KLP+DSNSAKERK VIRG   WW +LQWED+ TQ AFR
Sbjct: 833 YKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYTKWWEQLQWEDQDTQNAFR 892

Query: 396 SCFQ 399
            CF+
Sbjct: 893 PCFR 896

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 251/436 (57%), Gaps = 41/436 (9%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           +HDVIRDMA+WI CE  KE+  FLV+AG+ L EAP+V  W   +R+SLM NQIE ++  P
Sbjct: 472 LHDVIRDMALWIGCETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISLMDNQIEELTGSP 531

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
            CP+L TLFL  N  L+MI+D FFQ MPSL+VL +S       +LP G+S L  SL+ L+
Sbjct: 532 KCPNLSTLFLADNS-LKMISDTFFQFMPSLRVLDLSK--NSITELPRGISNL-VSLQYLN 587

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S T I ELP ELK L  LKCL L     L  IP QLIS  S L+V+ MF  G       
Sbjct: 588 LSQTNIKELPIELKNLDKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFNSGISE-RTV 646

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE-- 238
            +D +L    E L+QEL  LKYL  L +S+ S  A + LLSS KL+ CI  LCL  F   
Sbjct: 647 LKDGILSDDNEALVQELESLKYLHGLGVSVKSASAFKRLLSSYKLRICISGLCLKNFNGS 706

Query: 239 ------------------------LEELKIDYT----EIVR------KRREPFVFRNLHR 264
                                   LE+L+ID+     E V       K      F +L  
Sbjct: 707 SSLNLTSLSNAKCLSSLYISKCGSLEDLEIDWAGEGKETVESNYLNSKVSSHNSFHSLVW 766

Query: 265 VTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRL 324
           + +  C +LKD+T+LVF PNLK L +  CD M+E+I  GK  E+ E   ++SPF  LQ L
Sbjct: 767 LGIERCSRLKDLTWLVFVPNLKVLTIIDCDQMQEVIGTGKCGESAENGENLSPFVKLQVL 826

Query: 325 NLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQ 384
            L+DLP L+SI+WK LPF  L  + V  C  L+KLP+ +NSAK  + VI G   WWN ++
Sbjct: 827 ELDDLPQLKSIFWKALPFIYLNTIHVRNCPLLKKLPLSANSAKGNRIVIAGHNKWWNEVE 886

Query: 385 WEDEATQIAFRSCFQP 400
           WEDEATQ  F  CF P
Sbjct: 887 WEDEATQNVFLPCFVP 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 196/436 (44%), Positives = 254/436 (58%), Gaps = 53/436 (12%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           +HDVIRDMA+WI CE  KE+  FLV+A +GL EAP+V  W   +R+SL+ NQIE ++  P
Sbjct: 472 LHDVIRDMALWIACETGKEQDKFLVQASSGLTEAPEVARWMGPKRISLIGNQIEKLTGSP 531

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
            CP+L TLFL  N  L+MI D FFQ MP+L+VL +S       +LP G+S L  SL+ L+
Sbjct: 532 NCPNLSTLFLQDNS-LKMITDSFFQFMPNLRVLDLSR--NAMTELPQGISNL-VSLQYLN 587

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S T I ELP ELK L  LK L L     L  IP QLIS  S L+V+ MF  G       
Sbjct: 588 LSQTNIKELPIELKNLGKLKFLLLH-RMRLSSIPEQLISSLSMLQVIDMFNCG------- 639

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--- 237
                +  G E L++EL  LKYL  L +++ S  A + LLSS+KLKSCI  +CL+ F   
Sbjct: 640 -----ICDGDEALVEELESLKYLHDLGVTITSASAFKRLLSSDKLKSCISGVCLENFNGS 694

Query: 238 -----------------------ELEELKIDY-------TE---IVRKRREPFVFRNLHR 264
                                    E+L+ID+       TE   +  K      F NL  
Sbjct: 695 SSLNLTSLCNVKRLRNLFISNCGSSEDLEIDWAWEGKETTESNYLNSKVSSHSSFHNLSW 754

Query: 265 VTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRL 324
           + +  C +LKD+T+LVFAPNLK L +  CD M+EII  GK  E+ E   ++SPF  LQ L
Sbjct: 755 LRVKRCSRLKDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGESTENGENLSPFVKLQVL 814

Query: 325 NLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQ 384
            LEDLP L+SI+WK LPF  L  + V  C  L+KLP+D+NSAKE + VI G+ +W+N L 
Sbjct: 815 TLEDLPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKEHRIVISGQTEWFNELD 874

Query: 385 WEDEATQIAFRSCFQP 400
           WE+EAT  AF  CF P
Sbjct: 875 WENEATHNAFLPCFVP 890

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 186/415 (44%), Positives = 250/415 (60%), Gaps = 31/415 (7%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           +HDVIRDMA+WI  E  KE+  FLV+AG+ L EAP+V  W   +R+SLM NQIE ++  P
Sbjct: 472 LHDVIRDMALWIARETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISLMNNQIEKLTGSP 531

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
            CP+L TLFL  N  L+MI D FFQ MP+L+VL +S+      +LP  +S L  SL  LD
Sbjct: 532 ICPNLSTLFLRENS-LKMITDSFFQFMPNLRVLDLSD--NSITELPREISNL-VSLRYLD 587

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S T I ELP ELK L NLKCL L +   L  +P QLIS    L+V+ MF  G       
Sbjct: 588 LSFTEIKELPIELKNLGNLKCLLLSFMPQLSSVPEQLISSLLMLQVIDMFDCG------- 640

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCI----RSLCLDG 236
                +  G E L++EL  LKYL  L +++ S  A + LLSS+KL+SCI    R+L +  
Sbjct: 641 -----ICDGDEALVEELESLKYLHDLSVTITSTSAFKRLLSSDKLRSCISRRLRNLFISN 695

Query: 237 F-ELEELKIDYTEIVRKRREPFV----------FRNLHRVTMVLCHKLKDVTFLVFAPNL 285
              LE+L+ID+    +K  E             F +L  +T+V C +LKD+T++ FAPNL
Sbjct: 696 CGSLEDLEIDWVGEGKKTVESNYLNSKVSSHNSFHSLEALTVVSCSRLKDLTWVAFAPNL 755

Query: 286 KSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRL 345
           K L +  CD M+E+I   K  E+ E   ++ PF  LQ L+L  LP L+SI+WK LP   L
Sbjct: 756 KVLTIIDCDQMQEVIGTRKSDESAENGENLGPFAKLQVLHLVGLPQLKSIFWKALPLIYL 815

Query: 346 KEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQP 400
             + V  C  L+KLP+++NSAK  + VI G+ +WWN ++WEDEAT  AF  CF P
Sbjct: 816 NRIHVRNCPLLKKLPLNANSAKGHRIVISGQTEWWNEVEWEDEATHNAFLPCFVP 870

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482674|ref|XP_002281708.2| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 186/427 (43%), Positives = 247/427 (57%), Gaps = 52/427 (12%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
           +HDVIRDMA+WI  E  KE+  FLV+AG+ L EAP+V  W   +R+SLM NQIE ++  P
Sbjct: 472 LHDVIRDMALWIARETGKEQDKFLVKAGSTLTEAPEVAEWMGPKRISLMNNQIEKLTGSP 531

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
            CP+L TLFL  N  L+MI D FFQ MP+L+VL +S+      +LP G+S L  SL  LD
Sbjct: 532 ICPNLSTLFLRENS-LKMITDSFFQFMPNLRVLDLSD--NSITELPQGISNL-VSLRYLD 587

Query: 121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
           +S T I ELP ELK L NLKCL L     L  IP QLIS    L+V+ M   G       
Sbjct: 588 LSLTEIKELPIELKNLGNLKCLLLSDMPQLSSIPEQLISSLLMLQVIDMSNCG------- 640

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE-- 238
                +  G E L++EL  LKYL  L +++ S  A + LLSS+KL+SCI S+CL  F   
Sbjct: 641 -----ICDGDEALVEELESLKYLHDLGVTITSTSAFKRLLSSDKLRSCISSVCLRNFNGS 695

Query: 239 ------------------------LEELKIDYTEIVRKRREPFV----------FRNLHR 264
                                   LE L ID+    +K  E             F +L  
Sbjct: 696 SSLNLTSLCNVKNLCELSISNCGSLENLVIDWAWEGKKTTESNYLNSKVSSHNSFHSLEV 755

Query: 265 VTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRL 324
           V +  C +LKD+T++ FAPNLK+L +  CD M+E+I  GK  E+ E   ++SPF  LQ L
Sbjct: 756 VVIESCSRLKDLTWVAFAPNLKALTIIDCDQMQEVIGTGKCGESAENGENLSPFVKLQVL 815

Query: 325 NLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQ 384
            L+DLP L+SI+WK LPF  L  + V  C  L+KLP+++NSAK  + VI G+ +WWN+++
Sbjct: 816 ELDDLPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLNANSAKGHRIVISGQTEWWNKVE 875

Query: 385 WEDEATQ 391
           WEDE +Q
Sbjct: 876 WEDELSQ 882

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741963|emb|CBI33408.3| unnamed protein product [Vitis vinifera]

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 182/432 (42%), Positives = 252/432 (58%), Gaps = 46/432 (10%)

Query: 2   HDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPT 61
           HDV+RDMA+WIT E+ + K  FLV+  AGL +APD   W+   R+SLM NQIE ++  PT
Sbjct: 300 HDVVRDMALWITSEMGEMKGKFLVQTSAGLTQAPDFVKWKATERISLMDNQIEKLTGSPT 359

Query: 62  CPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI 121
           CP+L TL LD N +L+MI++GFFQ MP+L+VL +SN     ++LP  +S L  SL+ LD+
Sbjct: 360 CPNLSTLRLDLNSDLQMISNGFFQFMPNLRVLSLSN--TKIVELPSDISNL-VSLQYLDL 416

Query: 122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIG-YDRFHEA 180
           S T I +LP E+K LV LK L L  T  +  IPR LIS    L+ + M+  G YD+  E 
Sbjct: 417 SGTEIKKLPIEMKNLVQLKILIL-CTSKVSSIPRGLISSLLMLQAVGMYNCGLYDQVAEG 475

Query: 181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE-- 238
             +S    G E L++EL  LKYL  L +++ S   L+  LSS KL SC   +CL+ F+  
Sbjct: 476 GVESY---GKESLVEELESLKYLTHLTVTIASASVLKRFLSSRKLPSCTVGICLEMFKGS 532

Query: 239 ------------------------LEELKIDYT-----EIVRKRREPFV--FRNLHRVTM 267
                                   L E+K D+       +      P V  F  L  V +
Sbjct: 533 SSLNLSSLENMKHLYALTMKDLDSLREIKFDWAGKGKETMGYSSLNPKVKCFHGLREVAI 592

Query: 268 VLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLE 327
             C  LK++T+L+FAPNL  L +  CD MEE+I  GK AE     G++SPF  L +L L 
Sbjct: 593 NRCQMLKNLTWLIFAPNLLYLKIGQCDEMEEVI--GKGAEDG---GNLSPFTKLIQLELN 647

Query: 328 DLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWED 387
            LP L+++Y  PLPF  L  + V+GC +L+KLP++SNSA + + V+ G+++WWN L+WED
Sbjct: 648 GLPQLKNVYRNPLPFLYLDRIEVIGCPKLKKLPLNSNSANQGRVVMVGKQEWWNELEWED 707

Query: 388 EATQIAFRSCFQ 399
           EAT   F   F+
Sbjct: 708 EATLTTFLPSFK 719

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.375	0.170	0.452	6e-50
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.405	0.183	0.415	3.2e-48
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.450	0.204	0.369	3.5e-47
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.972	0.437	0.356	1.3e-46
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.970	0.434	0.347	3.5e-45
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.447	0.205	0.396	6.6e-45
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.967	0.440	0.342	1.9e-44
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.410	0.184	0.366	6.4e-44
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.407	0.215	0.408	4.2e-42
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.967	0.435	0.340	1e-41

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
 Identities = 71/157 (45%), Positives = 95/157 (60%)

Query:   241 ELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEII 300
             E+ I+ T   +    P  F NL  V +  C  LKD+T+L+FAPNL +L + GC  +E+II
Sbjct:   725 EIMIEKTPWKKNLTNPN-FSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDII 783

Query:   301 SVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLG-CDQLEKL 359
             S  K A   E    I PF+ L+ LNL  L  L+SIYW  LPF RL+ + +L  C +L KL
Sbjct:   784 SKEKAASVLEK--EILPFQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKL 841

Query:   360 PVDSNSA-KERKFVIR-GEEDWWNRLQWEDEATQIAF 394
             P+DS S  K  +FVI+  E+ W  R++WEDEATQ  F
Sbjct:   842 PLDSKSVVKVEEFVIKYKEKKWIERVEWEDEATQYRF 878

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.2e-48, Sum P(2) = 3.2e-48
 Identities = 71/171 (41%), Positives = 99/171 (57%)

Query:   229 IRSLCLDGFELEELKIDYTEIVRKR-REPFV--FRNLHRVTMVLCHKLKDVTFLVFAPNL 285
             +R L +    + E+KI+ T     R + P    F NL RV +  CH LKD+T+L+FAPNL
Sbjct:   711 LRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNL 770

Query:   286 KSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRL 345
               L++     +E+IIS  K AE  E    I PF  L+ L+L +L  L+ IY K L F  L
Sbjct:   771 TFLEVGFSKEVEDIISEEK-AE--EHSATIVPFRKLETLHLFELRGLKRIYAKALHFPCL 827

Query:   346 KEMAVLGCDQLEKLPVDSNS--AKERKFVIRGEEDWWNRLQWEDEATQIAF 394
             K + V  C++L KLP+DS S  A E   +  GE +W  R++WED+ATQ+ F
Sbjct:   828 KVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRF 878

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 3.5e-47, Sum P(2) = 3.5e-47
 Identities = 78/211 (36%), Positives = 117/211 (55%)

Query:   212 SYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFV------------- 258
             S  AL+ LL S++L  C++ + +   + E ++I     +   RE F+             
Sbjct:   672 SSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDLREVFIGGCGMRDIIIERN 731

Query:   259 -------FRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEM 311
                    F NL +V +  C+ LKD+T+L+FAPNL  L++     +EEIIS  K A T ++
Sbjct:   732 TSLTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQEK-ASTADI 790

Query:   312 MGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLG-CDQLEKLPVDSNS---AK 367
             +    PF  L+ L+L DLP L+SIYW PLPF  L ++ V   C +L KLP+DS S   A 
Sbjct:   791 V----PFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQSCIVAG 846

Query:   368 ERKFVIRGEEDWWNRLQWEDEATQIAFR-SC 397
             E   +  G+E+W  R++WED+AT++ F  SC
Sbjct:   847 EELVIQYGDEEWKERVEWEDKATRLRFLPSC 877

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 1.3e-46, P = 1.3e-46
 Identities = 148/415 (35%), Positives = 210/415 (50%)

Query:     1 MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
             MHDV+R+MA+WI  ++ + K   +V+ G GL+E P VK W +VRR+SLM+N+IE +S  P
Sbjct:   476 MHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSP 535

Query:    61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
              C  L TLFL  N  L  I+D FF+ +P L VL +S     R KLP  +S L  SL  LD
Sbjct:   536 ECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLR-KLPNQISKL-VSLRYLD 593

Query:   121 ISCTGITELPEEXXXXXXXXXXXXRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA 180
             +S T I  LP               +   L  I    IS  S LR L++           
Sbjct:   594 LSWTYIKRLPVGLQELKKLRYLRLDYMKRLKSISG--ISNISSLRKLQLLQSKMSLDMSL 651

Query:   181 PEDSVLFGGGEVLIQXXXXXXXXXXXXXXXGSYHALQILL-------SSNKLK----SCI 229
              E+  L    EVL                      LQIL+       SS  L       +
Sbjct:   652 VEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNL 711

Query:   230 RSLCLDGFELEELKIDYTEI-VRKRREPFV--FRNLHRVTMVLCHKLKDVTFLVFAPNLK 286
               + +    + E+KI+   + +   R P      NL  V +  C  LKD+T+L+FAPNL 
Sbjct:   712 NKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLT 771

Query:   287 SLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLK 346
             SL++   + +E II+  K A T  M G I PF+ L+ L L +L  L SIYW+PL F  LK
Sbjct:   772 SLEVLDSELVEGIINQEK-AMT--MSG-IIPFQKLESLRLHNLAMLRSIYWQPLSFPCLK 827

Query:   347 EMAVLGCDQLEKLPVDSNSA-KERKFVIR-GEEDWWNRLQWEDEATQIAFRSCFQ 399
              + +  C +L KLP+DS  A ++ + VI+  EE+W  R++W++EAT++ F   F+
Sbjct:   828 TIHITKCPELRKLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRFLPFFK 882

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 3.5e-45, P = 3.5e-45
 Identities = 143/411 (34%), Positives = 208/411 (50%)

Query:     1 MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
             +HDV+R+MA+WI  ++ K+   F+VRA  GL+E   V+ W  VRR+SLM+N I  +    
Sbjct:   475 LHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSLMKNNIAHLDGRL 534

Query:    61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELL 119
              C  L TL L  +  LE I+  FF  MP L VL +S  G   L +LP G+S L  SL+ L
Sbjct:   535 DCMELTTLLLQ-STHLEKISSEFFNSMPKLAVLDLS--GNYYLSELPNGISEL-VSLQYL 590

Query:   120 DISCTGITELPEEXXXXXXXXXXXXRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHE 179
             ++S TGI  LP+               T  L  +    IS    L+VL++    Y    +
Sbjct:   591 NLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG--ISCLHNLKVLKLSGSSYAWDLD 648

Query:   180 APEDSVLFGGGEVLIQX----XXXXXXXXXXXXXXGSYHALQILLSSNKLKSCIR-SLCL 234
               ++       EVL                          L+I  +SN+ ++  R SL +
Sbjct:   649 TVKELEALEHLEVLTTTIDDCTLGTDQFLSSHRLMSCIRFLKISNNSNRNRNSSRISLPV 708

Query:   235 DGFELEELKIDYTEIVR-KRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGC 293
                 L+E  I++      K      F +L  V +  C +L+++TFL+FAPNLK L +   
Sbjct:   709 TMDRLQEFTIEHCHTSEIKMGRICSFSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSS 768

Query:   294 DAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGC 353
             + +E+II+  K A   E  G I PF  L  L+L +L  L++IYW PLPF  L+++ V+GC
Sbjct:   769 NQLEDIINKEK-AHDGEKSG-IVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGC 826

Query:   354 DQLEKLPVDSNSAKE--RKFVIRGEE-DWWNRLQWEDEATQIAF---RSCF 398
               L+KLP+DS S K      +I   E +W  R++WEDEAT+  F   RS F
Sbjct:   827 PNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRFLANRSSF 877

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 6.6e-45, Sum P(2) = 6.6e-45
 Identities = 75/189 (39%), Positives = 108/189 (57%)

Query:   213 YHALQILL---SSNKLKSCIRSLCLDGFELEELKIDYTEIVRKR-REPFVFRNLHRVTMV 268
             Y +L++ L   SS++    I+   +   E+E    + +EIV  R R    F NL +V + 
Sbjct:   685 YQSLKVPLATISSSRFLE-IQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLRKVRLD 743

Query:   269 LCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIIS---VGKFAETPEMMGHISPFENLQRLN 325
              C  LKD+T+LVFAP+L +L +     +E IIS     +  +T E+ G I PF  L+ L 
Sbjct:   744 NCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVI-PFRELEFLT 802

Query:   326 LEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQW 385
             L +L  L+SIY  PL F +LKE+ +  C +L KLP+DS SA ++  VI  EE+W   LQW
Sbjct:   803 LRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQW 862

Query:   386 EDEATQIAF 394
             ED AT+  F
Sbjct:   863 EDVATKERF 871

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 141/412 (34%), Positives = 208/412 (50%)

Query:     1 MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
             MHDV+R+MA+WI  E+  +K  F+VRAG G++E P +K W  VRR+SLM+N+I  +    
Sbjct:   475 MHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSY 534

Query:    61 TCPHLLTLFL------DFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGS 114
              C  L TL L          +L+ I+  FF  MP L VL +S+  +   +LP  +S L  
Sbjct:   535 ECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSH-NKSLFELPEEISNL-V 592

Query:   115 SLELLDISCTGITELPEEXXXXXXXXXXXXRWTGALIRIPRQLISKFSRLRVLRMFA--I 172
             SL+ L++  T I+ LP+              +T  L  I    IS    L+VL++F   +
Sbjct:   593 SLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITG--ISSLHNLKVLKLFRSRL 650

Query:   173 GYDRFHEAPEDSVLFGGGEVLIQXXXXXXXXXXXXXXXGSY-HALQILLSS-NKLKSCIR 230
              +D  +   E   L    E+L                  S+   L+I  SS + L   + 
Sbjct:   651 PWD-LNTVKELETL-EHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLE 708

Query:   231 SLCLDGFELEELKIDYTEIVRKRREPFV-FRNLHRVTMVLCHKLKDVTFLVFAPNLKSLD 289
             SL +   +L E +I    I   +      F +L  V +  C  L+++TFL+FAP ++SL 
Sbjct:   709 SLSVSTDKLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLS 768

Query:   290 LDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMA 349
             +     +E+II+  K  E  E  G I PF  L  L L DLP L+ IYW+PLPF  L+E+ 
Sbjct:   769 VWHAKDLEDIINEEKACEGEES-G-ILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEIN 826

Query:   350 VLGCDQLEKLPVDSNSAK--ERKFVIRGEED-WWNRLQWEDEATQIAFR-SC 397
             +  C  L KLP+DS S K  E   +IR ++  W+  ++W DEAT+  F  SC
Sbjct:   827 IRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFLPSC 878

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 6.4e-44, Sum P(2) = 6.4e-44
 Identities = 63/172 (36%), Positives = 101/172 (58%)

Query:   229 IRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSL 288
             +RSL +   E+ E++I+          P  F NL +V + +C  LKD+T+L+FAPN+  L
Sbjct:   711 LRSLTMWNCEISEIEIERLTWNTNPTSPCFF-NLSQVIIHVCSSLKDLTWLLFAPNITYL 769

Query:   289 DLDGCDAMEEIIS----VGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTR 344
              ++  + ++E+IS     G   E  + +  I PF+ LQ L+L  LP L+SIYW  L F  
Sbjct:   770 MIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPC 829

Query:   345 LKEMAVLGCDQLEKLPVDSNSAKE-RKFVIRGEE-DWWNRLQWEDEATQIAF 394
             L  + V  C +L KLP+DS +    +KFV++ +E +W   ++W+DEAT++ F
Sbjct:   830 LSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYKETEWIESVEWKDEATKLHF 881

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 4.2e-42, Sum P(2) = 4.2e-42
 Identities = 69/169 (40%), Positives = 93/169 (55%)

Query:     1 MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
             MHDV+R+MA+WI  +  K+K NF+VRA  GL E P+ K W  VRR+SLM N IE ++   
Sbjct:   360 MHDVVREMALWIASDFGKQKENFVVRARVGLHERPEAKDWGAVRRMSLMDNHIEEITCES 419

Query:    61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD 120
              C  L TLFL  NQ L+ ++  F + M  L VL +S   +   KLP  +S L  SL+ LD
Sbjct:   420 KCSELTTLFLQSNQ-LKNLSGEFIRYMQKLVVLDLSY-NRDFNKLPEQISGL-VSLQFLD 476

Query:   121 ISCTGITELPEEXXXXXXXXXXXXRWTGALIRIPRQLISKFSRLRVLRM 169
             +S T I +LP               +T  L  I    IS+   LR+LR+
Sbjct:   477 LSNTSIKQLPVGLKKLKKLTFLNLAYTVRLCSISG--ISRLLSLRLLRL 523

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.0e-41, P = 1.0e-41
 Identities = 141/414 (34%), Positives = 206/414 (49%)

Query:     1 MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
             MHDV+R+MA+WI  E+  +K  F+VRAG G++E P VK W  VRR+SLM N+I  +    
Sbjct:   475 MHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNWNVVRRMSLMGNKIHHLVGSY 534

Query:    61 TCPHLLTLFLDFNQ--------ELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVL 112
              C  L TL L   +        E++ I+  FF  MP L VL +S+  Q   +LP  +S L
Sbjct:   535 ECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSH-NQSLFELPEEISNL 593

Query:   113 GSSLELLDISCTGITELPEEXXXXXXXXXXXXRWTGALIRIPRQLISKFSRLRVLRMFA- 171
               SL+ L++S TGI  L +               T  L  I    IS    L+VL+++  
Sbjct:   594 -VSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDG--ISSLHNLKVLKLYGS 650

Query:   172 -IGYDRFHEAPEDSVLFGGGEVLIQXXXXXXXXXXXXXXXGSYHALQILLSSNKLKSC-- 228
              + +D  +   E   L    E+L                  S   L  +  SN       
Sbjct:   651 RLPWD-LNTVKELETL-EHLEILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQ 708

Query:   229 IRSLCLDGFELEELKIDYTEIVRKRREPFV-FRNLHRVTMVLCHKLKDVTFLVFAPNLKS 287
             + SL +   +L E +I    I   +      F +L  VT+  C  L+++TFL+FAP L+S
Sbjct:   709 LESLSVSTDKLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRS 768

Query:   288 LDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKE 347
             L +     +E+II+  K  E  E  G I PF  L+ LNL+DLP L++IY +PLPF  L++
Sbjct:   769 LSVVDAKDLEDIINEEKACEG-EDSG-IVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEK 826

Query:   348 MAVLGCDQLEKLPVDSNSAK--ERKFVIRGEEDWWNR-LQWEDEATQIAFR-SC 397
             + +  C  L KLP+DS S K  E   +I  ++  W + ++W DEAT+  F  SC
Sbjct:   827 ITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRFLPSC 880

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	402
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.49
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.44
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.44
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.4
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.36
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.25
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.19
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG4341	483	consensus F-box protein containing LRR [General fu	98.96
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.92
KOG4341	483	consensus F-box protein containing LRR [General fu	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.72
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.67
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.65
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.6
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.58
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.42
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.08
PLN03150	623	hypothetical protein; Provisional	98.08
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.97
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
PLN03150	623	hypothetical protein; Provisional	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.81
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.67
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.22
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.88
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.71
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.58
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.9
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.72
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.3
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.66
smart00370	26	LRR Leucine-rich repeats, outliers.	84.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.98

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.95  E-value=4.8e-28  Score=250.03  Aligned_cols=376  Identities=39%  Similarity=0.640  Sum_probs=290.1

Q ss_pred             CchhHHHHHHHHhhhcccccCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEecccccc-cccc
Q 045968            1 MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQE-LEMI   79 (402)
Q Consensus         1 mhdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~   79 (402)
                      |||||||||+|++++....+++.++..+.+..++|....+..+|++++.++.+..++....++.|++|.+.++.. +..+
T Consensus       483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i  562 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI  562 (889)
T ss_pred             eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence            899999999999997777778877777778888899999999999999999999999999999999999998853 7778


Q ss_pred             chHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhh
Q 045968           80 ADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS  159 (402)
Q Consensus        80 ~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~  159 (402)
                      +..+|..+|.|++|++++|. .+..+|..++.+. +|++|+++++++.++|.+++++.+|.+|++..+.....++. +..
T Consensus       563 s~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~  639 (889)
T KOG4658|consen  563 SGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILL  639 (889)
T ss_pred             CHHHHhhCcceEEEECCCCC-ccCcCChHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhh
Confidence            88889999999999999986 8899999999999 99999999999999999999999999999998766666644 467


Q ss_pred             CCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--
Q 045968          160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--  237 (402)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--  237 (402)
                      .+.+|++|.+.......             +...+.++..+.+|+.+.++.....-+..+............+.+.++  
T Consensus       640 ~L~~Lr~L~l~~s~~~~-------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~  706 (889)
T KOG4658|consen  640 ELQSLRVLRLPRSALSN-------------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK  706 (889)
T ss_pred             hcccccEEEeecccccc-------------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc
Confidence            79999999998766322             667788899999999988875443222323222222222223332222  


Q ss_pred             -----------eeeeEeccccccccCCCC------ccc-cccccEEecccccCcccCcccccCCCCCEEeecCCcchHHH
Q 045968          238 -----------ELEELKIDYTEIVRKRRE------PFV-FRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEI  299 (402)
Q Consensus       238 -----------~L~~L~i~~~~~~~~~~~------~~~-~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~  299 (402)
                                 +|++|.|.++........      ... |+++.++.+.+|....++.+..-.|+|+.|.+..|..++++
T Consensus       707 ~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  707 RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence                       778888877766332211      112 66788888888877778888878899999999999999888


Q ss_pred             hhcCCCCCCccccCCCCCCCcccee-ecCccccccccccCccCCCCccEEEecCCCCCCCCCCCCCCCCCC--eeEEE-c
Q 045968          300 ISVGKFAETPEMMGHISPFENLQRL-NLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKER--KFVIR-G  375 (402)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~l~~L~~L-~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~--~~~~~-~  375 (402)
                      .+......  ........|..+..+ .+.+.+.+..+.+....++.|+.+.+..||++..+|.+......+  .+.+. .
T Consensus       787 i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~  864 (889)
T KOG4658|consen  787 IPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYP  864 (889)
T ss_pred             CCHHHHhh--hcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecC
Confidence            65322211  011124556666666 466777788888888888999999999999999999987766433  23333 3


Q ss_pred             cHHHhhhccccchhhhhhc
Q 045968          376 EEDWWNRLQWEDEATQIAF  394 (402)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~  394 (402)
                      +.+|.+.++|.+++.+..|
T Consensus       865 ~~~~~~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  865 DGEWLEGVYWEDELTKLRF  883 (889)
T ss_pred             CccceeeEEehhhhhhhhc
Confidence            4678888999999988766

>PLN03210 Resistant to P

Probab=99.90  E-value=5.9e-23  Score=222.20  Aligned_cols=290  Identities=19%  Similarity=0.237  Sum_probs=201.0

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI  121 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L  121 (402)
                      ++|.|.+.++.+..+|......+|+.|++.++ .+..++.. ++.+++|+.|+++++. .+..+|. ++.+. +|++|++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~-~~~l~~Lk~L~Ls~~~-~l~~ip~-ls~l~-~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-KLEKLWDG-VHSLTGLRNIDLRGSK-NLKEIPD-LSMAT-NLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcCCccCCcEEECcCc-cccccccc-cccCCCCCEEECCCCC-CcCcCCc-cccCC-cccEEEe
Confidence            45556666666666676667889999999988 78888776 7889999999999985 5677764 67777 9999999


Q ss_pred             cCC-CCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968          122 SCT-GITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL  200 (402)
Q Consensus       122 ~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  200 (402)
                      ++| .+..+|..++++++|+.|++++|+.++.+|.. + ++++|++|++.+|.......                .  ..
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p----------------~--~~  724 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFP----------------D--IS  724 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccc----------------c--cc
Confidence            997 67889999999999999999999999999975 3 79999999999986543110                0  12


Q ss_pred             CCCceEEEEecCchhhHhhhhhhhhcccceeeEecc---------------------ceeeeEeccccccccCCCC-ccc
Q 045968          201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDG---------------------FELEELKIDYTEIVRKRRE-PFV  258 (402)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---------------------~~L~~L~i~~~~~~~~~~~-~~~  258 (402)
                      .+|+.|.++.+....   ++... ...+|..|.+.+                     .+|++|+++++.....+|. .+.
T Consensus       725 ~nL~~L~L~~n~i~~---lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~  800 (1153)
T PLN03210        725 TNISWLDLDETAIEE---FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN  800 (1153)
T ss_pred             CCcCeeecCCCcccc---ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence            344555554333222   11111 122333333322                     1466666666544333332 125


Q ss_pred             cccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcC-CC--------CCCccccCCCCCCCccceeecCcc
Q 045968          259 FRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVG-KF--------AETPEMMGHISPFENLQRLNLEDL  329 (402)
Q Consensus       259 ~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~--------~~~~~~~~~~~~l~~L~~L~l~~c  329 (402)
                      +++|+.|++++|..++.+|....+++|+.|++++|..++.++... ..        +.. +.+..+..+++|+.|++.+|
T Consensus       801 L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        801 LHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence            777788888777767777655567777777777777665443110 00        000 12234677889999999999


Q ss_pred             ccccccccCccCCCCccEEEecCCCCCCCCCC
Q 045968          330 PNLESIYWKPLPFTRLKEMAVLGCDQLEKLPV  361 (402)
Q Consensus       330 ~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~  361 (402)
                      ++++.++.....+++|+.+++++|++|+.++.
T Consensus       880 ~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        880 NNLQRVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             CCcCccCcccccccCCCeeecCCCcccccccC
Confidence            99999988888889999999999999987754

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=6.8e-23  Score=193.73  Aligned_cols=324  Identities=20%  Similarity=0.239  Sum_probs=152.1

Q ss_pred             EEEeCCccccCCCccCCcc-ceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           24 LVRAGAGLKEAPDVKGWEN-VRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~-l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      +.+....+..||.+..... ++.|++..|.|..+..-  ..++.||+|+++.| .+..++...|..-.++++|+++.|  
T Consensus       107 v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N--  183 (873)
T KOG4194|consen  107 VNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASN--  183 (873)
T ss_pred             eeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccc--
Confidence            3334444444444444332 44444444444443221  44444444444444 444444333444444444444444  


Q ss_pred             ccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccc
Q 045968          101 GRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH  178 (402)
Q Consensus       101 ~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  178 (402)
                      .|+.+ ...|..+. +|..|.|++|+++.+|.. +.++++|+.|++.. +.++-+...++.++++|+.|.+..+.+... 
T Consensus       184 ~It~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL-  260 (873)
T KOG4194|consen  184 RITTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKL-  260 (873)
T ss_pred             cccccccccccccc-hheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccc-
Confidence            44444 22344444 444444444444444433 33344444444444 333333222244444444444444333211 


Q ss_pred             cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--------------eeeeEec
Q 045968          179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--------------ELEELKI  244 (402)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~i  244 (402)
                                    .-..+..+.++++|++..+......  .+..-....|+.|++++|              .|++|++
T Consensus       261 --------------~DG~Fy~l~kme~l~L~~N~l~~vn--~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL  324 (873)
T KOG4194|consen  261 --------------DDGAFYGLEKMEHLNLETNRLQAVN--EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL  324 (873)
T ss_pred             --------------cCcceeeecccceeecccchhhhhh--cccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence                          0112334455555555544333221  111222334555555555              4444444


Q ss_pred             cccccccCCCCcc-ccccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCcc
Q 045968          245 DYTEIVRKRREPF-VFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENL  321 (402)
Q Consensus       245 ~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L  321 (402)
                      +.+.+....+.++ .++.|+.|.++++ .++++.  .+..+.+|++|+++.+.. ...++        .....+.++++|
T Consensus       325 s~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~l-s~~IE--------Daa~~f~gl~~L  394 (873)
T KOG4194|consen  325 SSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIE--------DAAVAFNGLPSL  394 (873)
T ss_pred             cccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeE-EEEEe--------cchhhhccchhh
Confidence            4444433222211 3455666666665 455552  344566777777766432 22221        112356678888


Q ss_pred             ceeecCccccccccccCc-cCCCCccEEEecCCCCCCCCCCCCCCCC--------CCeeEEEccHHHhh
Q 045968          322 QRLNLEDLPNLESIYWKP-LPFTRLKEMAVLGCDQLEKLPVDSNSAK--------ERKFVIRGEEDWWN  381 (402)
Q Consensus       322 ~~L~l~~c~~l~~i~~~~-~~~~~L~~L~i~~c~~L~~lp~~~~~~~--------~~~~~~~~~~~~~~  381 (402)
                      +.|.+.+ ++++.|+..+ .+++.|++|++.+-+ +.++..+.....        ..-..++|...|..
T Consensus       395 rkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~  461 (873)
T KOG4194|consen  395 RKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLCDCQLKWLA  461 (873)
T ss_pred             hheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEEeccHHHHH
Confidence            8888887 5788887643 347888888885432 343322221111        22235678888876

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.84  E-value=4.6e-20  Score=198.57  Aligned_cols=131  Identities=22%  Similarity=0.325  Sum_probs=59.5

Q ss_pred             ccCCccceEEEccCCccc-ccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccc-ccccccccc
Q 045968           37 VKGWENVRRLSLMQNQIE-TVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVL  112 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~-~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l  112 (402)
                      +..+++|+.|++++|.+. .+|..  ..+++|++|++++|.....+|.   ..+++|++|++++|  .+. .+|..++.+
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n--~~~~~~p~~~~~l  163 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNN--MLSGEIPNDIGSF  163 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCC--cccccCChHHhcC
Confidence            445566666666666554 33332  2555555555555522112221   23444555555544  333 234444444


Q ss_pred             cccccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          113 GSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       113 ~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      . +|++|++++|.+. .+|..+.++++|++|++++|.....+|.. +.++++|++|++.+|.+
T Consensus       164 ~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        164 S-SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             C-CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence            4 4555555444432 34444444444444444443222233332 44444444444444433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=3.7e-23  Score=196.89  Aligned_cols=308  Identities=19%  Similarity=0.237  Sum_probs=186.0

Q ss_pred             CcEEEEeCCccccCCC-ccCCccceEEEccCCcccccC-CCCCCCccceEecccccccc--ccchHHhccCCCCCEEEcc
Q 045968           21 RNFLVRAGAGLKEAPD-VKGWENVRRLSLMQNQIETVS-EVPTCPHLLTLFLDFNQELE--MIADGFFQLMPSLKVLKMS   96 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~l~~L~~L~l~   96 (402)
                      ..++...+..+..+|. ++.+.+|++|++..|.+..+. ..+.+|.||.+.+..| ++.  .+|+. +-++..|..|+++
T Consensus        34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~d-iF~l~dLt~lDLS  111 (1255)
T KOG0444|consen   34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTD-IFRLKDLTILDLS  111 (1255)
T ss_pred             eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCch-hcccccceeeecc
Confidence            5778888888888864 777788999999888776653 4578888888888877 544  37777 6678888888888


Q ss_pred             CCCccccccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968           97 NCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus        97 ~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      +|  .+.+.|..+.... ++.+|+|++|.|..+|.. +.+++-|-+||++. +.+..+|+. ++++.+|++|.++++...
T Consensus       112 hN--qL~EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  112 HN--QLREVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hh--hhhhcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCChhh
Confidence            88  8888888877777 888888888888888876 56788888888888 688888876 788888888888877763


Q ss_pred             ccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-------------eeeeE
Q 045968          176 RFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-------------ELEEL  242 (402)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------~L~~L  242 (402)
                      .               .-+..+..++.|+.|++++.. .....++.+.....+|..++++.+             +|+.|
T Consensus       187 h---------------fQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrL  250 (1255)
T KOG0444|consen  187 H---------------FQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRL  250 (1255)
T ss_pred             H---------------HHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhhee
Confidence            2               234444455555555555332 122233333333333333333333             33333


Q ss_pred             eccccccccCCCCccccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCc------------
Q 045968          243 KIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETP------------  309 (402)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~------------  309 (402)
                      .++++.+.....-.+.-.+|++|+++.+ +++.+| .+..+++|+.|.+.++.. +      |.|.+|            
T Consensus       251 NLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL-~------FeGiPSGIGKL~~Levf~  322 (1255)
T KOG0444|consen  251 NLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKL-T------FEGIPSGIGKLIQLEVFH  322 (1255)
T ss_pred             ccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcc-c------ccCCccchhhhhhhHHHH
Confidence            3333322211111112334555555554 444443 333445554444444221 1      111110            


Q ss_pred             -------cccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCC
Q 045968          310 -------EMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLP  360 (402)
Q Consensus       310 -------~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp  360 (402)
                             -.+..+..|+.|+.|.++. +.+-.+|....-+|.|+.|+++.-|+|..-|
T Consensus       323 aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  323 AANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence                   0113556666677776643 5555566555556777777777777766544

>PLN03210 Resistant to P

Probab=99.84  E-value=8e-20  Score=197.98  Aligned_cols=329  Identities=23%  Similarity=0.301  Sum_probs=233.7

Q ss_pred             CchhHHHHHHHHhhhcc--cccCcEEEEeC----------------------Ccccc--C--CCccCCccceEEEccCCc
Q 045968            1 MHDVIRDMAIWITCEIE--KEKRNFLVRAG----------------------AGLKE--A--PDVKGWENVRRLSLMQNQ   52 (402)
Q Consensus         1 mhdl~~~~~~~~~~~~~--~~~~~~~~~~~----------------------~~~~~--~--~~~~~~~~l~~L~l~~~~   52 (402)
                      |||++|+||..++++++  ++++.+++..+                      ....+  +  ..+.++++|+.|.+..+.
T Consensus       490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~  569 (1153)
T PLN03210        490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK  569 (1153)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence            99999999999998764  33444443221                      00111  1  246788999999886553


Q ss_pred             cc-------ccCCC-CCC-CccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecC
Q 045968           53 IE-------TVSEV-PTC-PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISC  123 (402)
Q Consensus        53 ~~-------~~~~~-~~~-~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~  123 (402)
                      ..       .+|.. ..+ ++|+.|.+.++ .+..+|.. | .+.+|++|++.++  .+..++..+..+. +|++|++++
T Consensus       570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~-f-~~~~L~~L~L~~s--~l~~L~~~~~~l~-~Lk~L~Ls~  643 (1153)
T PLN03210        570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSN-F-RPENLVKLQMQGS--KLEKLWDGVHSLT-GLRNIDLRG  643 (1153)
T ss_pred             ccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCc-C-CccCCcEEECcCc--cccccccccccCC-CCCEEECCC
Confidence            21       13332 333 46999999987 78888876 4 5789999999999  8999988888888 999999998


Q ss_pred             C-CCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCC
Q 045968          124 T-GITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKY  202 (402)
Q Consensus       124 ~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  202 (402)
                      + .+..+| .+..+++|+.|++.+|..+..+|.. +.++++|++|++.+|.....                +..-.++++
T Consensus       644 ~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~----------------Lp~~i~l~s  705 (1153)
T PLN03210        644 SKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEI----------------LPTGINLKS  705 (1153)
T ss_pred             CCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCc----------------cCCcCCCCC
Confidence            6 567777 4788999999999999999999986 99999999999999876431                111126788


Q ss_pred             CceEEEEecCchhhHhhhhhhhhcccceeeEeccce------------eeeEecccccccc-------CCCC-ccccccc
Q 045968          203 LEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE------------LEELKIDYTEIVR-------KRRE-PFVFRNL  262 (402)
Q Consensus       203 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------L~~L~i~~~~~~~-------~~~~-~~~~~~L  262 (402)
                      |+.|.+++|.  .+..++.   ...+|+.|.++++.            |++|.+.++....       ..+. ...+++|
T Consensus       706 L~~L~Lsgc~--~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        706 LYRLNLSGCS--RLKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCEEeCCCCC--Ccccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccc
Confidence            9999998553  3333332   23578888888773            3334443321100       0000 0035789


Q ss_pred             cEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc------
Q 045968          263 HRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI------  335 (402)
Q Consensus       263 ~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i------  335 (402)
                      +.|++++|..+..+| .++.+++|+.|+|++|..++.++.            . ..+++|+.|++++|..+..+      
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~-~~L~sL~~L~Ls~c~~L~~~p~~~~n  847 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------G-INLESLESLDLSGCSRLRTFPDISTN  847 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------C-CCccccCEEECCCCCccccccccccc
Confidence            999999997777776 678899999999999998887753            1 25667777777777655443      


Q ss_pred             --------------ccCccCCCCccEEEecCCCCCCCCCCCCCCCCCCeeE
Q 045968          336 --------------YWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFV  372 (402)
Q Consensus       336 --------------~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~  372 (402)
                                    +.....+++|+.|++.+|++|+.+|...... ..++.
T Consensus       848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~  897 (1153)
T PLN03210        848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLET  897 (1153)
T ss_pred             cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc-cCCCe
Confidence                          3334568999999999999999998766554 44433

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.83  E-value=1.8e-21  Score=184.25  Aligned_cols=302  Identities=18%  Similarity=0.256  Sum_probs=220.2

Q ss_pred             ccCCccceEEEccCCcccccCCCC-CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccc
Q 045968           37 VKGWENVRRLSLMQNQIETVSEVP-TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGS  114 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~  114 (402)
                      +..+++|+.+++..|.++.+|... ...+|+.|++.+| .+..+....++.++.||.|+++.|  .++.++ ..|..-. 
T Consensus        98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN--~is~i~~~sfp~~~-  173 (873)
T KOG4194|consen   98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRN--LISEIPKPSFPAKV-  173 (873)
T ss_pred             HhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhc--hhhcccCCCCCCCC-
Confidence            455667777777777777777773 4455888888877 777777666888888888888888  788875 3454445 


Q ss_pred             cccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchh
Q 045968          115 SLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL  193 (402)
Q Consensus       115 ~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (402)
                      ++++|+|++|.|+.+..+ +..+.+|-.|.++. +.++.+|..+++++++|+.|++..+.+..+               .
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~iriv---------------e  237 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIV---------------E  237 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeee---------------h
Confidence            899999999998877654 67778899999998 788999987788899999999998887532               2


Q ss_pred             hHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--------------eeeeEeccccccccCCCCcc-c
Q 045968          194 IQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRREPF-V  258 (402)
Q Consensus       194 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~~-~  258 (402)
                      ...++.++.|+.|.+.-++...++  .+....+..++.|+++.|              .|+.|+++.+.+..+-.+.| +
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~--DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLD--DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCccccc--Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            234667777777777755544433  233445667888888887              67777888777755444432 6


Q ss_pred             cccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccc---cc
Q 045968          259 FRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPN---LE  333 (402)
Q Consensus       259 ~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~---l~  333 (402)
                      +++|+.|+++.+ .++.++  .+..+..|++|.++++ .++.+-.           ..+.++.+|+.|+++++.-   ++
T Consensus       316 tqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-----------~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  316 TQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-----------GAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             cccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHh-----------hHHHHhhhhhhhcCcCCeEEEEEe
Confidence            789999999998 788885  5667899999999995 4555532           4678889999999998542   23


Q ss_pred             ccccCccCCCCccEEEecCCCCCCCCCCCCCCCCCCeeEEE
Q 045968          334 SIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIR  374 (402)
Q Consensus       334 ~i~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~~  374 (402)
                      +-.....++|+|++|++.+ .+||.+|....+..++++..+
T Consensus       383 Daa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  383 DAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             cchhhhccchhhhheeecC-ceeeecchhhhccCcccceec
Confidence            3322333489999999976 578888765555545555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.82  E-value=2.2e-19  Score=193.28  Aligned_cols=149  Identities=26%  Similarity=0.334  Sum_probs=106.4

Q ss_pred             CcEEEEeCCccc-cCCC--ccCCccceEEEccCCcccccCCCCCCCccceEecccccccc-ccchHHhccCCCCCEEEcc
Q 045968           21 RNFLVRAGAGLK-EAPD--VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMS   96 (402)
Q Consensus        21 ~~~~~~~~~~~~-~~~~--~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~   96 (402)
                      ...+......+. .+|.  +..+.+|++|++++|.+....+...+++|++|++++| .+. .+|.. ++.+++|++|+++
T Consensus        95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~  172 (968)
T PLN00113         95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLG  172 (968)
T ss_pred             CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECc
Confidence            455555555543 3443  2367889999998888765434456788888888887 444 45554 7888888888888


Q ss_pred             CCCcccc-ccccccccccccccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968           97 NCGQGRL-KLPVGMSVLGSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus        97 ~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      +|  .+. .+|..++.+. +|++|++++|.+. .+|..+.++++|++|++.+|.....+|.. +.++++|++|++.+|.+
T Consensus       173 ~n--~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        173 GN--VLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             cC--cccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee
Confidence            88  665 5577777777 8888888888765 56777888888888888885444456654 77888888888887766


Q ss_pred             c
Q 045968          175 D  175 (402)
Q Consensus       175 ~  175 (402)
                      .
T Consensus       249 ~  249 (968)
T PLN00113        249 T  249 (968)
T ss_pred             c
Confidence            3

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=2.5e-21  Score=184.55  Aligned_cols=292  Identities=21%  Similarity=0.227  Sum_probs=198.9

Q ss_pred             cEEEEeCCccccC-CCccCCccceEEEccCCcccc--cC-CCCCCCccceEeccccccccccchHHhccCCCCCEEEccC
Q 045968           22 NFLVRAGAGLKEA-PDVKGWENVRRLSLMQNQIET--VS-EVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN   97 (402)
Q Consensus        22 ~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~--~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~   97 (402)
                      ..+.++...+..+ ..++.++.||.+.+..|+++.  +| ++..+..|++|++++| ++.+.|.. +...+++-+|++++
T Consensus        58 EHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNLS~  135 (1255)
T KOG0444|consen   58 EHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNLSY  135 (1255)
T ss_pred             hhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchh-hhhhcCcEEEEccc
Confidence            4455555555444 456777899999999997764  44 4488999999999999 89999988 89999999999999


Q ss_pred             CCccccccccc-cccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968           98 CGQGRLKLPVG-MSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus        98 ~~~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                      |  .|..+|.. |.++. .|-+|||++|++..+|.-+.++.+|++|++++ +-+.++....+.+|++|+.|++++.+.+-
T Consensus       136 N--~IetIPn~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  136 N--NIETIPNSLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             C--ccccCCchHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchh
Confidence            9  99999865 45677 89999999999999999999999999999999 45555433225567888888888877652


Q ss_pred             cccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-------------eeeeEe
Q 045968          177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-------------ELEELK  243 (402)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------~L~~L~  243 (402)
                                    ......+..+.+|+.++++.++   ++.++.......+|++|+++++             +|++|.
T Consensus       212 --------------~N~Ptsld~l~NL~dvDlS~N~---Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  212 --------------DNIPTSLDDLHNLRDVDLSENN---LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLN  274 (1255)
T ss_pred             --------------hcCCCchhhhhhhhhccccccC---CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhc
Confidence                          2233445566677777776443   3334444445567777777777             455555


Q ss_pred             ccccccccCCCCccccccccEEecccccCcc-------------------------cCc-ccccCCCCCEEeecCCcchH
Q 045968          244 IDYTEIVRKRREPFVFRNLHRVTMVLCHKLK-------------------------DVT-FLVFAPNLKSLDLDGCDAME  297 (402)
Q Consensus       244 i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-------------------------~l~-~~~~l~~L~~L~l~~c~~l~  297 (402)
                      ++.+.....+.....+++|++|++.++ .++                         -+| .+..+++|+.|.++.+..++
T Consensus       275 lSrNQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT  353 (1255)
T KOG0444|consen  275 LSRNQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT  353 (1255)
T ss_pred             cccchhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee
Confidence            555444222222224566666666554 222                         222 23345566666666644432


Q ss_pred             HHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEe
Q 045968          298 EIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAV  350 (402)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i  350 (402)
                       +            +..+--+|-|+.|++..++++.-=|....+-.+|+.-.|
T Consensus       354 -L------------PeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  354 -L------------PEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             -c------------hhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence             2            346778899999999999988654444333344544444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.65  E-value=5.4e-18  Score=154.31  Aligned_cols=316  Identities=21%  Similarity=0.206  Sum_probs=205.4

Q ss_pred             EEeCCccccCC-CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccc
Q 045968           25 VRAGAGLKEAP-DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL  103 (402)
Q Consensus        25 ~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~  103 (402)
                      ......+..+| .++++.++..|++..|.+..+|.+..|..|+++.+..| .++.+|..+.+.++++.+|++.+|  +++
T Consensus       189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN--klk  265 (565)
T KOG0472|consen  189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN--KLK  265 (565)
T ss_pred             ccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc--ccc
Confidence            33444556664 57888889999999999999998899999999998877 888999888889999999999999  899


Q ss_pred             ccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCC--CCcEEEee-eecccccccC
Q 045968          104 KLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFS--RLRVLRMF-AIGYDRFHEA  180 (402)
Q Consensus       104 ~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~-~~~~~~~~~~  180 (402)
                      ++|..+..+. +|++||+++|.++.+|..++++ +|++|.+.| +-++.+..+++.+-+  -|++|+-. .+......  
T Consensus       266 e~Pde~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG-NPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s--  340 (565)
T KOG0472|consen  266 EVPDEICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEG-NPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS--  340 (565)
T ss_pred             cCchHHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcC-CchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC--
Confidence            9999888888 8999999999999999999999 999999999 566666555333222  24454321 11111111  


Q ss_pred             CCcccccCC--cchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceee--------------eEec
Q 045968          181 PEDSVLFGG--GEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELE--------------ELKI  244 (402)
Q Consensus       181 ~~~~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~--------------~L~i  244 (402)
                       +|+.....  ....+.......+.+.|+++.-....++.-.-......-+...+++.+.|.              .+.+
T Consensus       341 -e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l  419 (565)
T KOG0472|consen  341 -EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL  419 (565)
T ss_pred             -cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence             11100000  111223344445556666654333332211111111223444555555222              1222


Q ss_pred             cccccccCCCC-ccccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhh-------------cCCCCCCc
Q 045968          245 DYTEIVRKRRE-PFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIIS-------------VGKFAETP  309 (402)
Q Consensus       245 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~-------------~~~~~~~~  309 (402)
                      + ....+|++. ...+++|..|+++++ .+.++| .++.+..|+.|+++.+.. ..++.             .+.. ..+
T Consensus       420 s-nn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nq-i~~  495 (565)
T KOG0472|consen  420 S-NNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQ-IGS  495 (565)
T ss_pred             h-cCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhcccc-ccc
Confidence            2 223355554 116889999999887 677777 667788899999988632 22221             0000 000


Q ss_pred             cccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCC
Q 045968          310 EMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCD  354 (402)
Q Consensus       310 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~  354 (402)
                      -....++.+.+|..|++.+ ..+..||...+.|.+|++|++.+-|
T Consensus       496 vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             cChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence            1123578889999999987 6789999999999999999998866

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.58  E-value=2.8e-14  Score=145.53  Aligned_cols=133  Identities=23%  Similarity=0.197  Sum_probs=100.1

Q ss_pred             CcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      ...+.+....+..+|... ..+++.|++.+|.++.+|..  .++|++|++++| .+..+|..    .++|+.|++.+|  
T Consensus       203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls~N--  272 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSLPVL----PPGLLELSIFSN--  272 (788)
T ss_pred             CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcccCc----ccccceeeccCC--
Confidence            567777787888887633 25799999999999888754  588999999988 77777652    468889999998  


Q ss_pred             cccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       101 ~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      .++.+|...   . +|+.|++++|++..+|..   .++|+.|++++ +.++.+|..    ..+|+.|.+.+|.+.
T Consensus       273 ~L~~Lp~lp---~-~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        273 PLTHLPALP---S-GLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLT  335 (788)
T ss_pred             chhhhhhch---h-hcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCccc
Confidence            788776532   3 788889999988888763   46789999988 577777652    345777777776664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.49  E-value=5.2e-16  Score=126.12  Aligned_cols=165  Identities=23%  Similarity=0.358  Sum_probs=142.6

Q ss_pred             CccccCCCccCCccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc
Q 045968           29 AGLKEAPDVKGWENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV  107 (402)
Q Consensus        29 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~  107 (402)
                      ..+.+++.+..++.+++|.++.|.+..+|+. ..+.+|+.|+++.| +++++|.+ ++.+++|+.|++.-|  .+..+|.
T Consensus        21 Ssf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmn--rl~~lpr   96 (264)
T KOG0617|consen   21 SSFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMN--RLNILPR   96 (264)
T ss_pred             ccHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchh--hhhcCcc
Confidence            3456778888889999999999999988765 89999999999977 99999998 999999999999999  8999999


Q ss_pred             ccccccccccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCccc
Q 045968          108 GMSVLGSSLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSV  185 (402)
Q Consensus       108 ~~~~l~~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  185 (402)
                      .|+.++ .|++||++.|.+.  .+|-.+.-++.|+.|+++. +.++-+|.+ ++++++|+.|.+.++...+         
T Consensus        97 gfgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll~---------  164 (264)
T KOG0617|consen   97 GFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLLS---------  164 (264)
T ss_pred             ccCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchhh---------
Confidence            999998 9999999998765  6888888889999999999 788999987 9999999999998887653         


Q ss_pred             ccCCcchhhHhhhcCCCCceEEEEecCchhh
Q 045968          186 LFGGGEVLIQELLGLKYLEVLELSLGSYHAL  216 (402)
Q Consensus       186 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  216 (402)
                             ...+++.+..|++|++.++....+
T Consensus       165 -------lpkeig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  165 -------LPKEIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             -------CcHHHHHHHHHHHHhcccceeeec
Confidence                   446778888888999886654433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.44  E-value=1e-14  Score=145.50  Aligned_cols=256  Identities=21%  Similarity=0.249  Sum_probs=164.5

Q ss_pred             ccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968           41 ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD  120 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~  120 (402)
                      .+++.|+...|.+..+.....-.+|++++++++ .+..+|.+ +..|.+|+.+++.+|  .+..+|..+.... +|++|+
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp~w-i~~~~nle~l~~n~N--~l~~lp~ri~~~~-~L~~l~  293 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLPEW-IGACANLEALNANHN--RLVALPLRISRIT-SLVSLS  293 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchh-hhhcchHH-HHhcccceEecccch--hHHhhHHHHhhhh-hHHHHH
Confidence            356666666666654433455677888888877 77777755 788888888888888  7777777777777 888888


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCC-CcEEEeeeecccccccCCCcc------------ccc
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSR-LRVLRMFAIGYDRFHEAPEDS------------VLF  187 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~------------~~~  187 (402)
                      +..|.+..+|.....+..|++|++.. +.+.++|...+..... |+.|+.+.+.....+  -.|.            +..
T Consensus       294 ~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  294 AAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNH  370 (1081)
T ss_pred             hhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCc
Confidence            88888888877777778888888877 5777776643332222 444444433332211  0000            000


Q ss_pred             CCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhh-hhcccceeeEeccceeeeEeccccccccCCCCccccccccEEe
Q 045968          188 GGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSN-KLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVT  266 (402)
Q Consensus       188 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~  266 (402)
                      - +...+..+.++++|+.|+++.+....++   ++. .....|+.|.+++|.|+.|..+-         . .++.|++|.
T Consensus       371 L-td~c~p~l~~~~hLKVLhLsyNrL~~fp---as~~~kle~LeeL~LSGNkL~~Lp~tv---------a-~~~~L~tL~  436 (1081)
T KOG0618|consen  371 L-TDSCFPVLVNFKHLKVLHLSYNRLNSFP---ASKLRKLEELEELNLSGNKLTTLPDTV---------A-NLGRLHTLR  436 (1081)
T ss_pred             c-cccchhhhccccceeeeeecccccccCC---HHHHhchHHhHHHhcccchhhhhhHHH---------H-hhhhhHHHh
Confidence            0 4445666778888999999866544333   221 22234444444444444443111         2 688999999


Q ss_pred             cccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccc
Q 045968          267 MVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPN  331 (402)
Q Consensus       267 l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  331 (402)
                      ..++ .+..+|.+..++.|+.+|++.| .++.+..          ..... =|+|++|++++++.
T Consensus       437 ahsN-~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l----------~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  437 AHSN-QLLSFPELAQLPQLKVLDLSCN-NLSEVTL----------PEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             hcCC-ceeechhhhhcCcceEEecccc-hhhhhhh----------hhhCC-CcccceeeccCCcc
Confidence            9887 7888999999999999999985 4554421          11111 28999999999765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.44  E-value=6.5e-16  Score=140.92  Aligned_cols=127  Identities=24%  Similarity=0.354  Sum_probs=83.6

Q ss_pred             cceEEEccCCcccccC-CCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVS-EVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~  120 (402)
                      .+..+.+..|.++.+. +...+..+.++.+.+| ++..+|+. ++.+..+..++.+++  .++.+|..++.+. +|..|+
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~a-ig~l~~l~~l~vs~n--~ls~lp~~i~s~~-~l~~l~  120 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAA-IGELEALKSLNVSHN--KLSELPEQIGSLI-SLVKLD  120 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHH-HHHHHHHHHhhcccc--hHhhccHHHhhhh-hhhhhh
Confidence            4555666666666543 3466677777777766 55566655 666666677777777  6777776666666 777777


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      .+.|.+.++|++++.+..|..++... +++..+|.+ +.++.+|..+.+.++...
T Consensus       121 ~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~-~~~~~~l~~l~~~~n~l~  173 (565)
T KOG0472|consen  121 CSSNELKELPDSIGRLLDLEDLDATN-NQISSLPED-MVNLSKLSKLDLEGNKLK  173 (565)
T ss_pred             ccccceeecCchHHHHhhhhhhhccc-cccccCchH-HHHHHHHHHhhccccchh
Confidence            77777777777777666677666665 566666665 666666666666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.43  E-value=1.7e-13  Score=142.50  Aligned_cols=332  Identities=22%  Similarity=0.273  Sum_probs=190.1

Q ss_pred             CcEEEEeCCccccCCCccCCccceEEEccCCc--ccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEcc
Q 045968           21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQ--IETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMS   96 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~   96 (402)
                      ...++.-...+..++.-..+++++.|-+.++.  +..++.  ...+|.|++|++++|..+..+|.+ ++.+-+||+|+++
T Consensus       525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~  603 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLS  603 (889)
T ss_pred             eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccccc
Confidence            35566666667777777777789999999985  566665  588999999999999889999988 9999999999999


Q ss_pred             CCCccccccccccccccccccEEEecCCC-CccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968           97 NCGQGRLKLPVGMSVLGSSLELLDISCTG-ITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus        97 ~~~~~i~~l~~~~~~l~~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      ++  .++.+|..++++. .|.+|++..++ +..+|.....+++|++|.+..- . .......++.+.+|++|....+...
T Consensus       604 ~t--~I~~LP~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s-~-~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  604 DT--GISHLPSGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS-A-LSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             CC--CccccchHHHHHH-hhheeccccccccccccchhhhcccccEEEeecc-c-cccchhhHHhhhcccchhhheeecc
Confidence            99  9999999999999 99999999974 4445555666999999999873 3 1111122444445555544433332


Q ss_pred             cc--ccCCCcc--------ccc---CCcchhhHhhhcCCCCceEEEEecCchhhHh-hhhhhhhcccceeeEeccc-eee
Q 045968          176 RF--HEAPEDS--------VLF---GGGEVLIQELLGLKYLEVLELSLGSYHALQI-LLSSNKLKSCIRSLCLDGF-ELE  240 (402)
Q Consensus       176 ~~--~~~~~~~--------~~~---~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~-~L~  240 (402)
                      ..  ...+.+.        .+.   ......+..+..+.+|+.|.+..++...+.. .........        +. ++.
T Consensus       679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~--------~f~~l~  750 (889)
T KOG4658|consen  679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL--------CFPNLS  750 (889)
T ss_pred             hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhh--------hHHHHH
Confidence            11  0111110        000   0011122234445555555555443322110 000000000        00 122


Q ss_pred             eEeccccccccCCCCccccccccEEecccccCcccC-cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCC
Q 045968          241 ELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV-TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFE  319 (402)
Q Consensus       241 ~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~  319 (402)
                      .+.+..+.....+.+....++|++|++..|..++++ +....+..++++.+..+ .+.........+...........++
T Consensus       751 ~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~~~~l~~l~~i~~~~l~~~  829 (889)
T KOG4658|consen  751 KVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRMLCSLGGLPQLYWLPLSFL  829 (889)
T ss_pred             HHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccceeeecCCCCceeEecccCcc
Confidence            223333333333333226789999999999877774 44444444444333221 1111100000000000111222333


Q ss_pred             ccceeecCccccccccccCccCCCCccEEEecCC-CCCCCCCCCCCCCCCCeeEEEccHHH
Q 045968          320 NLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGC-DQLEKLPVDSNSAKERKFVIRGEEDW  379 (402)
Q Consensus       320 ~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c-~~L~~lp~~~~~~~~~~~~~~~~~~~  379 (402)
                      .|+.+.+..||++..       +|.+.++.+.+| +++...|..     ..++.|.++.+.
T Consensus       830 ~l~~~~ve~~p~l~~-------~P~~~~~~i~~~~~~~~~~~~~-----~~~~~v~~~~~~  878 (889)
T KOG4658|consen  830 KLEELIVEECPKLGK-------LPLLSTLTIVGCEEKLKEYPDG-----EWLEGVYWEDEL  878 (889)
T ss_pred             chhheehhcCccccc-------CccccccceeccccceeecCCc-----cceeeEEehhhh
Confidence            455555555555544       588889999997 888888854     235566655443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=4.2e-13  Score=137.61  Aligned_cols=117  Identities=21%  Similarity=0.309  Sum_probs=52.1

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI  121 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L  121 (402)
                      .++.|++++|.++.+|... .++|++|++++| .+..+|..+   .++|+.|++++|  .+..+|..+.  . +|++|++
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N-~LtsLP~~l---~~~L~~L~Ls~N--~L~~LP~~l~--s-~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELKSLPENL-QGNIKTLYANSN-QLTSIPATL---PDTIQEMELSIN--RITELPERLP--S-ALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCCcCChhh-ccCCCEEECCCC-ccccCChhh---hccccEEECcCC--ccCcCChhHh--C-CCCEEEC
Confidence            4555555555555444321 234555555544 444444331   124555555555  4444444332  1 4555555


Q ss_pred             cCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      ++|++..+|..+.  .+|+.|++++ +.++.+|.. +  .++|++|++.+|.+
T Consensus       270 s~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-l--p~sL~~L~Ls~N~L  316 (754)
T PRK15370        270 FHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-L--PSGITHLNVQSNSL  316 (754)
T ss_pred             cCCccCccccccC--CCCcEEECCC-CccccCccc-c--hhhHHHHHhcCCcc
Confidence            5555554444332  3455555555 244444432 1  12444444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=1.7e-12  Score=132.58  Aligned_cols=247  Identities=20%  Similarity=0.167  Sum_probs=166.4

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI  121 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L  121 (402)
                      .-..|+++.+.++.+|... .++|+.|.+.+| ++..+|.    .+++|++|++++|  .++.+|..    +++|+.|++
T Consensus       202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N--~LtsLP~l----p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN--QLTSLPVL----PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC----CCCCCcEEEecCC--ccCcccCc----ccccceeec
Confidence            4556899999998888642 258999999988 7887775    2589999999999  89988753    238999999


Q ss_pred             cCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCC
Q 045968          122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK  201 (402)
Q Consensus       122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  201 (402)
                      ++|.+..+|..   ..+|+.|++.+ +.++.+|..    +++|++|++++|.+...+.                 +  ..
T Consensus       270 s~N~L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~-----------------l--p~  322 (788)
T PRK15387        270 FSNPLTHLPAL---PSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLASLPA-----------------L--PS  322 (788)
T ss_pred             cCCchhhhhhc---hhhcCEEECcC-Ccccccccc----ccccceeECCCCccccCCC-----------------C--cc
Confidence            99999888763   36788999999 588888762    5789999999988764211                 0  12


Q ss_pred             CCceEEEEecCchhhHhhhhhhhhcccceeeEeccc----------eeeeEeccccccccCCCCccccccccEEeccccc
Q 045968          202 YLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF----------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCH  271 (402)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~  271 (402)
                      .|+.|.+..+....++.      .+..|+.|++++|          +|+.|.++++.... +|.  ...+|+.|+++++ 
T Consensus       323 ~L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~-LP~--l~~~L~~LdLs~N-  392 (788)
T PRK15387        323 ELCKLWAYNNQLTSLPT------LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTS-LPA--LPSGLKELIVSGN-  392 (788)
T ss_pred             cccccccccCccccccc------cccccceEecCCCccCCCCCCCcccceehhhcccccc-Ccc--cccccceEEecCC-
Confidence            34455555443333221      1234555555555          33344444444332 221  2457888888877 


Q ss_pred             CcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEec
Q 045968          272 KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVL  351 (402)
Q Consensus       272 ~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~  351 (402)
                      .++.+|..  .++|+.|++++|. +..++               ..+.+|+.|++++ ..++.+|.....+++|+.|+++
T Consensus       393 ~Lt~LP~l--~s~L~~LdLS~N~-LssIP---------------~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        393 RLTSLPVL--PSELKELMVSGNR-LTSLP---------------MLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cccCCCCc--ccCCCEEEccCCc-CCCCC---------------cchhhhhhhhhcc-CcccccChHHhhccCCCeEECC
Confidence            56666543  3678888888864 33332               1234678888877 4577777766778899999998


Q ss_pred             CCCCCC
Q 045968          352 GCDQLE  357 (402)
Q Consensus       352 ~c~~L~  357 (402)
                      +.+ |.
T Consensus       454 ~N~-Ls  458 (788)
T PRK15387        454 GNP-LS  458 (788)
T ss_pred             CCC-CC
Confidence            764 44

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.40  E-value=3.9e-14  Score=129.20  Aligned_cols=323  Identities=20%  Similarity=0.208  Sum_probs=163.0

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+.++.++|.--- .....+++..|.|+.+|+.  ..+++||.|+++.| +|+.|.+.+|++++.|..|.+.++.
T Consensus        49 ~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             ceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCC
Confidence            344455566666654322 3455666666666666654  56666666666666 6666666666666666666666522


Q ss_pred             cccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968          100 QGRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                       .|+++|. .|+.+. .|+-|.+.-|.+.-++.. +..+++|..|.+.. +.++.++..++..+.+++.+++..+.+.-.
T Consensus       127 -kI~~l~k~~F~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  127 -KITDLPKGAFGGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             -chhhhhhhHhhhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccc
Confidence             6666653 355565 666666666666544433 56666666666666 455666554466666666665544432100


Q ss_pred             ccCCCcccccCCcchh----hHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCC
Q 045968          178 HEAPEDSVLFGGGEVL----IQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKR  253 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~  253 (402)
                            =++.. ....    ..+.+.+.-.....++.   ..+.+..+. +..-.++.+      ...+. ..+.....-
T Consensus       204 ------CnL~w-la~~~a~~~ietsgarc~~p~rl~~---~Ri~q~~a~-kf~c~~esl------~s~~~-~~d~~d~~c  265 (498)
T KOG4237|consen  204 ------CNLPW-LADDLAMNPIETSGARCVSPYRLYY---KRINQEDAR-KFLCSLESL------PSRLS-SEDFPDSIC  265 (498)
T ss_pred             ------cccch-hhhHHhhchhhcccceecchHHHHH---HHhcccchh-hhhhhHHhH------HHhhc-cccCcCCcC
Confidence                  00000 0000    00000000000000000   000000000 000000000      00000 011111111


Q ss_pred             CC---ccccccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCc
Q 045968          254 RE---PFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED  328 (402)
Q Consensus       254 ~~---~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  328 (402)
                      |.   . .+++|++|+++++ .++.+.  +|..+..+++|.+.++ .++.+..           ..+.++..|+.|++.+
T Consensus       266 P~~cf~-~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~-----------~~f~~ls~L~tL~L~~  331 (498)
T KOG4237|consen  266 PAKCFK-KLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSS-----------GMFQGLSGLKTLSLYD  331 (498)
T ss_pred             hHHHHh-hcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHH-----------HhhhccccceeeeecC
Confidence            11   2 5788999999988 788873  7888899999999884 4555543           3667888999999988


Q ss_pred             cccccccccCccC-CCCccEEEecCCCCCCCCCCCCCCCCCCeeEEEccHHHhhhccccchhhhhhccccccc
Q 045968          329 LPNLESIYWKPLP-FTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEEDWWNRLQWEDEATQIAFRSCFQP  400 (402)
Q Consensus       329 c~~l~~i~~~~~~-~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (402)
                       ..++.+.+..+. ..+|.+|.+-                .+...++|...|..  +|-....-.+.-+|=+|
T Consensus       332 -N~it~~~~~aF~~~~~l~~l~l~----------------~Np~~CnC~l~wl~--~Wlr~~~~~~~~~Cq~p  385 (498)
T KOG4237|consen  332 -NQITTVAPGAFQTLFSLSTLNLL----------------SNPFNCNCRLAWLG--EWLRKKSVVGNPRCQSP  385 (498)
T ss_pred             -CeeEEEecccccccceeeeeehc----------------cCcccCccchHHHH--HHHhhCCCCCCCCCCCC
Confidence             466666554321 3333333331                12223456666666  55444444444445444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.38  E-value=1e-13  Score=138.53  Aligned_cols=271  Identities=20%  Similarity=0.200  Sum_probs=151.4

Q ss_pred             cceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEc
Q 045968           65 LLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL  144 (402)
Q Consensus        65 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  144 (402)
                      |+.|+++.| .+...|.. +-.+.+|+.|+++.|  .+..+|.+.+.+. +|++|.|.+|.+..+|..+..+.+|+.|++
T Consensus        47 L~~l~lsnn-~~~~fp~~-it~l~~L~~ln~s~n--~i~~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   47 LKSLDLSNN-QISSFPIQ-ITLLSHLRQLNLSRN--YIRSVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQYLDL  121 (1081)
T ss_pred             eEEeecccc-ccccCCch-hhhHHHHhhcccchh--hHhhCchhhhhhh-cchhheeccchhhcCchhHHhhhccccccc
Confidence            555555544 44444443 444455555555555  4555554444444 555555555555555555555555555555


Q ss_pred             cCCCCccccchhhhhCCCCCcEEEeeeeccccc-c---cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchh-----
Q 045968          145 RWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF-H---EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA-----  215 (402)
Q Consensus       145 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----  215 (402)
                      +. +.+..+|.- +..++.++.+...++..... .   +...+..++......+.++..+.+  .|++..+....     
T Consensus       122 S~-N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~  197 (1081)
T KOG0618|consen  122 SF-NHFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN  197 (1081)
T ss_pred             ch-hccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence            55 444444442 44444444444443310000 0   000000000002223333333333  34443222220     


Q ss_pred             hHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc-ccccCCCCCEEeecCCc
Q 045968          216 LQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCD  294 (402)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~  294 (402)
                      ...+......+..|..+.+.+-+++.|..+++...+..... ...+|+.++++.+ ++..+| |+..+++|+.|+...+.
T Consensus       198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p-~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP-VPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNR  275 (1081)
T ss_pred             ccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc-ccccceeeecchh-hhhcchHHHHhcccceEecccchh
Confidence            00111112233456666666668888888887776555555 6789999999988 677775 78889999999999965


Q ss_pred             chHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCC
Q 045968          295 AMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPV  361 (402)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~  361 (402)
                      . ..++            ..+....+|+.|++.+| .+++++.....+..|+.|++.. .+|..+|.
T Consensus       276 l-~~lp------------~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~lp~  327 (1081)
T KOG0618|consen  276 L-VALP------------LRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSLPD  327 (1081)
T ss_pred             H-HhhH------------HHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-ccccccch
Confidence            5 4443            35666778888888774 6888888877788999999955 46777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.36  E-value=2.3e-12  Score=132.26  Aligned_cols=201  Identities=20%  Similarity=0.278  Sum_probs=135.1

Q ss_pred             ccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968           41 ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD  120 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~  120 (402)
                      .+...|++.+++++.+|... .++++.|++++| .+..+|...+   ++|++|++++|  .++.+|..+.  . +|+.|+
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N--~LtsLP~~l~--~-~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSN--QLTSIPATLP--D-TIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCC--ccccCChhhh--c-cccEEE
Confidence            35678999998888887642 357999999988 8888887643   58999999999  8998887653  2 899999


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL  200 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  200 (402)
                      +++|.+..+|..+.  .+|+.|++++ +.++.+|.. +  .++|++|++++|.+...+.                .+  .
T Consensus       248 Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~----------------~l--p  303 (754)
T PRK15370        248 LSINRITELPERLP--SALQSLDLFH-NKISCLPEN-L--PEELRYLSVYDNSIRTLPA----------------HL--P  303 (754)
T ss_pred             CcCCccCcCChhHh--CCCCEEECcC-CccCccccc-c--CCCCcEEECCCCccccCcc----------------cc--h
Confidence            99999999988764  5899999997 688888875 4  3589999999987753210                01  1


Q ss_pred             CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCcccc
Q 045968          201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLV  280 (402)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~  280 (402)
                      +.|+.|.++.+....++.   .  ..++|+.|.+++|          .... +|.. .+++|+.|++++| .++.+|.. 
T Consensus       304 ~sL~~L~Ls~N~Lt~LP~---~--l~~sL~~L~Ls~N----------~Lt~-LP~~-l~~sL~~L~Ls~N-~L~~LP~~-  364 (754)
T PRK15370        304 SGITHLNVQSNSLTALPE---T--LPPGLKTLEAGEN----------ALTS-LPAS-LPPELQVLDVSKN-QITVLPET-  364 (754)
T ss_pred             hhHHHHHhcCCccccCCc---c--ccccceeccccCC----------cccc-CChh-hcCcccEEECCCC-CCCcCChh-
Confidence            245666666544333221   1  1234444444433          3322 1222 2457777777776 55555421 


Q ss_pred             cCCCCCEEeecCCc
Q 045968          281 FAPNLKSLDLDGCD  294 (402)
Q Consensus       281 ~l~~L~~L~l~~c~  294 (402)
                      -.++|+.|++++|.
T Consensus       365 lp~~L~~LdLs~N~  378 (754)
T PRK15370        365 LPPTITTLDVSRNA  378 (754)
T ss_pred             hcCCcCEEECCCCc
Confidence            13567777777754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=1.5e-13  Score=111.86  Aligned_cols=143  Identities=28%  Similarity=0.446  Sum_probs=126.2

Q ss_pred             eCCccccC-CCccCCccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccc-
Q 045968           27 AGAGLKEA-PDVKGWENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL-  103 (402)
Q Consensus        27 ~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~-  103 (402)
                      +...+..+ |.+..+.+++.|.+.+|+++++|.. ++++.|+.|++..| .+..+|.. |+.+|.|++|++..|  .+. 
T Consensus        41 SHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprg-fgs~p~levldltyn--nl~e  116 (264)
T KOG0617|consen   41 SHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRG-FGSFPALEVLDLTYN--NLNE  116 (264)
T ss_pred             ccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccc-cCCCchhhhhhcccc--cccc
Confidence            33444444 6688889999999999999999876 89999999999988 78888888 999999999999999  665 


Q ss_pred             -ccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968          104 -KLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       104 -~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                       .+|..|..+. .|+.|.++.|.+..+|..++++++|+.|.+.. +.+-.+|.+ ++.++.|++|++.++....
T Consensus       117 ~~lpgnff~m~-tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  117 NSLPGNFFYMT-TLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             ccCCcchhHHH-HHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccceeee
Confidence             5798888888 99999999999999999999999999999999 678889987 9999999999999987753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.25  E-value=8.1e-12  Score=117.51  Aligned_cols=131  Identities=22%  Similarity=0.174  Sum_probs=67.7

Q ss_pred             CccceEEEccCCcccc-----cCC-CCCCCccceEeccccccccc------cchHHhccCCCCCEEEccCCCcccc-ccc
Q 045968           40 WENVRRLSLMQNQIET-----VSE-VPTCPHLLTLFLDFNQELEM------IADGFFQLMPSLKVLKMSNCGQGRL-KLP  106 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~l~~------~~~~~~~~l~~L~~L~l~~~~~~i~-~l~  106 (402)
                      +..++.+++.++.+..     ++. ....++++++.++++ .+..      .....+..+++|++|++++|  .+. ..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~   98 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN--ALGPDGC   98 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC--CCChhHH
Confidence            3446677777666532     221 245566667766655 2221      11122555667777777776  443 223


Q ss_pred             ccccccc--ccccEEEecCCCCcc-----ccHhhhcC-CCCcEEEccCCCCcc-----ccchhhhhCCCCCcEEEeeeec
Q 045968          107 VGMSVLG--SSLELLDISCTGITE-----LPEELKKL-VNLKCLNLRWTGALI-----RIPRQLISKFSRLRVLRMFAIG  173 (402)
Q Consensus       107 ~~~~~l~--~~L~~L~L~~~~l~~-----lp~~i~~l-~~L~~L~l~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~  173 (402)
                      ..+..+.  ++|++|++++|.+..     +...+..+ ++|+.|++++|. ++     .++. .+..+++|++|++.+|.
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAK-ALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHH-HHHhCCCcCEEECcCCC
Confidence            3333333  137777777765542     22234445 666777776643 33     1222 24555667777766665


Q ss_pred             cc
Q 045968          174 YD  175 (402)
Q Consensus       174 ~~  175 (402)
                      +.
T Consensus       177 l~  178 (319)
T cd00116         177 IG  178 (319)
T ss_pred             Cc
Confidence            53

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.19  E-value=2.3e-11  Score=114.44  Aligned_cols=136  Identities=25%  Similarity=0.217  Sum_probs=76.4

Q ss_pred             CCCCccceEecccccccc-----ccchHHhccCCCCCEEEccCCCccccc-------cccccccccccccEEEecCCCCc
Q 045968           60 PTCPHLLTLFLDFNQELE-----MIADGFFQLMPSLKVLKMSNCGQGRLK-------LPVGMSVLGSSLELLDISCTGIT  127 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~-----~~~~~~~~~l~~L~~L~l~~~~~~i~~-------l~~~~~~l~~~L~~L~L~~~~l~  127 (402)
                      ..+.+|+.+.+.++ .+.     .++.. +...+.|++++++++  .+..       ++..+..+. +|++|++++|.+.
T Consensus        20 ~~l~~L~~l~l~~~-~l~~~~~~~i~~~-l~~~~~l~~l~l~~~--~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~   94 (319)
T cd00116          20 PKLLCLQVLRLEGN-TLGEEAAKALASA-LRPQPSLKELCLSLN--ETGRIPRGLQSLLQGLTKGC-GLQELDLSDNALG   94 (319)
T ss_pred             HHHhhccEEeecCC-CCcHHHHHHHHHH-HhhCCCceEEecccc--ccCCcchHHHHHHHHHHhcC-ceeEEEccCCCCC
Confidence            44556778888777 432     23333 566677888887777  4431       233445555 7888888777665


Q ss_pred             c-ccHhhhcCCC---CcEEEccCCCCccc-----cchhhhhCC-CCCcEEEeeeecccccccCCCcccccCCcchhhHhh
Q 045968          128 E-LPEELKKLVN---LKCLNLRWTGALIR-----IPRQLISKF-SRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQEL  197 (402)
Q Consensus       128 ~-lp~~i~~l~~---L~~L~l~~~~~~~~-----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (402)
                      . .+..+..+.+   |++|++++|. +..     +.. .+..+ ++|++|++.+|.+....           .......+
T Consensus        95 ~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~-----------~~~~~~~~  161 (319)
T cd00116          95 PDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGAS-----------CEALAKAL  161 (319)
T ss_pred             hhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchH-----------HHHHHHHH
Confidence            2 3333433333   7888877753 331     111 24455 77777777777764210           11123345


Q ss_pred             hcCCCCceEEEEecCc
Q 045968          198 LGLKYLEVLELSLGSY  213 (402)
Q Consensus       198 ~~l~~L~~L~l~~~~~  213 (402)
                      ..+++|++|++.++..
T Consensus       162 ~~~~~L~~L~l~~n~l  177 (319)
T cd00116         162 RANRDLKELNLANNGI  177 (319)
T ss_pred             HhCCCcCEEECcCCCC
Confidence            5566777777765543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.16  E-value=1.1e-12  Score=119.87  Aligned_cols=281  Identities=19%  Similarity=0.237  Sum_probs=178.2

Q ss_pred             EEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecC-
Q 045968           46 LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISC-  123 (402)
Q Consensus        46 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~-  123 (402)
                      .+-++.+++++|..-- +....+.+..| +|..+|+.+|+.+++||.|++++|  .|+.+ |.+|..+. .|..|-+.+ 
T Consensus        51 VdCr~~GL~eVP~~LP-~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N--~Is~I~p~AF~GL~-~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP-PETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKN--NISFIAPDAFKGLA-SLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcccCcccCC-CcceEEEeccC-CcccCChhhccchhhhceeccccc--chhhcChHhhhhhH-hhhHHHhhcC
Confidence            3444456666664311 34556788888 999999999999999999999999  89998 88898888 777777776 


Q ss_pred             CCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCC
Q 045968          124 TGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKY  202 (402)
Q Consensus       124 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  202 (402)
                      |+|+++|.. +..+..|+.|.+.- +++..++.+++..+++|..|.+.++.+...               .-..+..+..
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i---------------~~~tf~~l~~  189 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSI---------------CKGTFQGLAA  189 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhh---------------ccccccchhc
Confidence            899999987 78899999999988 688888888899999999999999887532               1123445556


Q ss_pred             CceEEEEecCchh------hHhh----hhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEE---eccc
Q 045968          203 LEVLELSLGSYHA------LQIL----LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRV---TMVL  269 (402)
Q Consensus       203 L~~L~l~~~~~~~------~~~~----~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L---~l~~  269 (402)
                      ++.+++.-+....      ....    +......+.....          .+......+..... +...++.+   ..+.
T Consensus       190 i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~----------rl~~~Ri~q~~a~k-f~c~~esl~s~~~~~  258 (498)
T KOG4237|consen  190 IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY----------RLYYKRINQEDARK-FLCSLESLPSRLSSE  258 (498)
T ss_pred             cchHhhhcCccccccccchhhhHHhhchhhcccceecchH----------HHHHHHhcccchhh-hhhhHHhHHHhhccc
Confidence            6666665322110      0000    0000000000000          00000000111111 11112222   1122


Q ss_pred             ccCcccC---cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccC-ccCCCCc
Q 045968          270 CHKLKDV---TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK-PLPFTRL  345 (402)
Q Consensus       270 ~~~l~~l---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~~L  345 (402)
                      | .+..+   ..+..+++|+.|+++++ .++.+-.           ..+.+...++.|.+.+ .+++.+... ...+..|
T Consensus       259 d-~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~-----------~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L  324 (498)
T KOG4237|consen  259 D-FPDSICPAKCFKKLPNLRKLNLSNN-KITRIED-----------GAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGL  324 (498)
T ss_pred             c-CcCCcChHHHHhhcccceEeccCCC-ccchhhh-----------hhhcchhhhhhhhcCc-chHHHHHHHhhhccccc
Confidence            3 23332   25788999999999995 4555532           4667778899999987 567666543 3347899


Q ss_pred             cEEEecCCCCCCCC-CCCCCCCCCCeeEEE
Q 045968          346 KEMAVLGCDQLEKL-PVDSNSAKERKFVIR  374 (402)
Q Consensus       346 ~~L~i~~c~~L~~l-p~~~~~~~~~~~~~~  374 (402)
                      +.|++.+ .+++.+ |...... ..+..+.
T Consensus       325 ~tL~L~~-N~it~~~~~aF~~~-~~l~~l~  352 (498)
T KOG4237|consen  325 KTLSLYD-NQITTVAPGAFQTL-FSLSTLN  352 (498)
T ss_pred             eeeeecC-CeeEEEeccccccc-ceeeeee
Confidence            9999987 478887 4443333 5555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.11  E-value=1.1e-10  Score=98.42  Aligned_cols=136  Identities=26%  Similarity=0.307  Sum_probs=53.8

Q ss_pred             ccCCCccCCccceEEEccCCcccccCCCC-CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccc
Q 045968           32 KEAPDVKGWENVRRLSLMQNQIETVSEVP-TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMS  110 (402)
Q Consensus        32 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~  110 (402)
                      ..++......+++.|++.++.|+.+.... .+.+|+.|++++| .+..++.  +..++.|+.|++++|  .++.+...+.
T Consensus        10 ~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N--~I~~i~~~l~   84 (175)
T PF14580_consen   10 EQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNN--RISSISEGLD   84 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS-----S-CHHHH
T ss_pred             ccccccccccccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCC--CCCccccchH
Confidence            34455555567889999999999887775 6889999999988 8888765  788899999999999  8888865553


Q ss_pred             -cccccccEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccc---hhhhhCCCCCcEEEeeeecc
Q 045968          111 -VLGSSLELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIP---RQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       111 -~l~~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~  174 (402)
                       .++ +|++|++++|++..+.  ..+..+++|+.|++.+| -+...+   ..++..+++|+.|+-.....
T Consensus        85 ~~lp-~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   85 KNLP-NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             HH-T-T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred             HhCC-cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEccH
Confidence             466 9999999999887653  34778899999999984 444332   23477899999998665443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=1.1e-10  Score=98.42  Aligned_cols=140  Identities=28%  Similarity=0.311  Sum_probs=48.5

Q ss_pred             CCcccccCCCCCCCccceEeccccccccccchHHhc-cCCCCCEEEccCCCccccccccccccccccccEEEecCCCCcc
Q 045968           50 QNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQ-LMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITE  128 (402)
Q Consensus        50 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~  128 (402)
                      .+-|+.++.......+++|++.+| .+..+..  +. .+.+|+.|++++|  .++.+. .+..+. +|++|++++|.+.+
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n-~I~~Ie~--L~~~l~~L~~L~Ls~N--~I~~l~-~l~~L~-~L~~L~L~~N~I~~   78 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGN-QISTIEN--LGATLDKLEVLDLSNN--QITKLE-GLPGLP-RLKTLDLSNNRISS   78 (175)
T ss_dssp             -------------------------------S----TT-TT--EEE-TTS----S--T-T----T-T--EEE--SS---S
T ss_pred             cccccccccccccccccccccccc-ccccccc--hhhhhcCCCEEECCCC--CCcccc-CccChh-hhhhcccCCCCCCc
Confidence            344555555566667788888877 6666643  44 4677888888888  777764 455666 88888888888887


Q ss_pred             ccHhh-hcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceE
Q 045968          129 LPEEL-KKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVL  206 (402)
Q Consensus       129 lp~~i-~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  206 (402)
                      ++..+ ..+++|++|++++ +.+.++.. ..+..+++|++|++.+|.....            ...-...+..+|+|+.|
T Consensus        79 i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~------------~~YR~~vi~~lP~Lk~L  145 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK------------KNYRLFVIYKLPSLKVL  145 (175)
T ss_dssp             -CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS------------TTHHHHHHHH-TT-SEE
T ss_pred             cccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch------------hhHHHHHHHHcChhhee
Confidence            76554 3578888888877 56655432 2367788888888888777532            22334456667777777


Q ss_pred             EEE
Q 045968          207 ELS  209 (402)
Q Consensus       207 ~l~  209 (402)
                      +-.
T Consensus       146 D~~  148 (175)
T PF14580_consen  146 DGQ  148 (175)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4e-11  Score=111.14  Aligned_cols=163  Identities=17%  Similarity=0.128  Sum_probs=117.1

Q ss_pred             CccCCccceEEEccCCcccccC---CCCCCCccceEeccccccccc--cchHHhccCCCCCEEEccCCCcccccccccc-
Q 045968           36 DVKGWENVRRLSLMQNQIETVS---EVPTCPHLLTLFLDFNQELEM--IADGFFQLMPSLKVLKMSNCGQGRLKLPVGM-  109 (402)
Q Consensus        36 ~~~~~~~l~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~-  109 (402)
                      +-+.+.+||.+.+.++.+...+   ....|++++.|+++.| -+..  .-..++.++|+|+.|+++.|  .+.....+. 
T Consensus       116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N--rl~~~~~s~~  192 (505)
T KOG3207|consen  116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN--RLSNFISSNT  192 (505)
T ss_pred             HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc--cccCCccccc
Confidence            3456678999999998887766   3488999999999988 3332  22456899999999999999  666542221 


Q ss_pred             -ccccccccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccc
Q 045968          110 -SVLGSSLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVL  186 (402)
Q Consensus       110 -~~l~~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  186 (402)
                       ..+. +|+.|.++.|+++  ++...+..+++|+.|++..+..+.....+ -.-+..|++|+++++.+..          
T Consensus       193 ~~~l~-~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~----------  260 (505)
T KOG3207|consen  193 TLLLS-HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID----------  260 (505)
T ss_pred             hhhhh-hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc----------
Confidence             2344 9999999999987  33334668899999999996433222211 3447789999999998863          


Q ss_pred             cCCcchhhHhhhcCCCCceEEEEecCchhhH
Q 045968          187 FGGGEVLIQELLGLKYLEVLELSLGSYHALQ  217 (402)
Q Consensus       187 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  217 (402)
                          .......+.++.|+.|.++.++..++.
T Consensus       261 ----~~~~~~~~~l~~L~~Lnls~tgi~si~  287 (505)
T KOG3207|consen  261 ----FDQGYKVGTLPGLNQLNLSSTGIASIA  287 (505)
T ss_pred             ----cccccccccccchhhhhccccCcchhc
Confidence                233445778888888888866655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.96  E-value=6.2e-11  Score=109.30  Aligned_cols=91  Identities=18%  Similarity=0.287  Sum_probs=64.0

Q ss_pred             ccccccEEecccccCcccCc--ccc-cCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccc
Q 045968          258 VFRNLHRVTMVLCHKLKDVT--FLV-FAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES  334 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l~--~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~  334 (402)
                      ++++|+.|.++.|.++++..  .++ +.+.|+.+++.+|....+-          ........+|.|+.|.+++|..+.+
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG----------TLASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh----------hHhhhccCCchhccCChhhhhhhhh
Confidence            57888888888887777743  333 5678888888887776554          2334567788888888888876654


Q ss_pred             c-----ccCccCCCCccEEEecCCCCCCC
Q 045968          335 I-----YWKPLPFTRLKEMAVLGCDQLEK  358 (402)
Q Consensus       335 i-----~~~~~~~~~L~~L~i~~c~~L~~  358 (402)
                      -     .....+...|..+.+.+||.++.
T Consensus       388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  388 EGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             hhhhhhhhccccccccceeeecCCCCchH
Confidence            4     23344567788888888887764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=4.6e-11  Score=105.66  Aligned_cols=182  Identities=21%  Similarity=0.166  Sum_probs=87.7

Q ss_pred             cccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcch
Q 045968          115 SLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEV  192 (402)
Q Consensus       115 ~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  192 (402)
                      .|++|||+...++  .+--.+..+.+|+.|.+.+...-.++... +.+-.+|+.|+++.|....             ...
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n~  251 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------ENA  251 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hhH
Confidence            4777777766554  23223556667777777663222334433 5666677777777666542             111


Q ss_pred             hhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--eeeeEeccccccccCCCCccccccccEEecccc
Q 045968          193 LIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLC  270 (402)
Q Consensus       193 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (402)
                      .-..+.+++.|..|+++||.......-.....-...|.+|+++++  ++..=++..     ..  . .+++|.+|++++|
T Consensus       252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-----L~--~-rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-----LV--R-RCPNLVHLDLSDS  323 (419)
T ss_pred             HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-----HH--H-hCCceeeeccccc
Confidence            222345566666777776654332221111112223333333333  111111100     00  1 4666666666666


Q ss_pred             cCccc--CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcc
Q 045968          271 HKLKD--VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL  329 (402)
Q Consensus       271 ~~l~~--l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  329 (402)
                      ..+++  +..+.+|+.|++|.++.|..+.-           +..-.+...|.|.+|++.+|
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p-----------~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIP-----------ETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcCCCh-----------HHeeeeccCcceEEEEeccc
Confidence            54544  22445566666666666654321           11223455566666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.92  E-value=7.1e-11  Score=108.95  Aligned_cols=285  Identities=16%  Similarity=0.155  Sum_probs=161.1

Q ss_pred             cceEEEccCCcccccCCC----CCCCccceEeccccccccccc-hHHhccCCCCCEEEccCCCcccccc-cccc-ccccc
Q 045968           42 NVRRLSLMQNQIETVSEV----PTCPHLLTLFLDFNQELEMIA-DGFFQLMPSLKVLKMSNCGQGRLKL-PVGM-SVLGS  114 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~-~~l~~  114 (402)
                      .++.|++.++.-......    ..+|++++|.+.+|..+++.. .++-..|++|+++++..|. .+++. -..+ ..++ 
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-~iT~~~Lk~la~gC~-  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-SITDVSLKYLAEGCR-  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-hhHHHHHHHHHHhhh-
Confidence            678899888743322222    789999999999998777633 3445779999999999986 67754 2222 3456 


Q ss_pred             cccEEEecCC-CCcc--ccHhhhcCCCCcEEEccCCCCccccchh-hhhCCCCCcEEEeeeecccccccCCCcccccCCc
Q 045968          115 SLELLDISCT-GITE--LPEELKKLVNLKCLNLRWTGALIRIPRQ-LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGG  190 (402)
Q Consensus       115 ~L~~L~L~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  190 (402)
                      +|++|++++| .+..  +-.....+.+++.+...+|.....-... +=..+..+..+++..|...+             +
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-------------D  283 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-------------D  283 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-------------c
Confidence            9999999997 3432  3233455666777777777443321110 01234445556665665442             2


Q ss_pred             chhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEecccccccc---CCCCccccccccEEec
Q 045968          191 EVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVR---KRREPFVFRNLHRVTM  267 (402)
Q Consensus       191 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~---~~~~~~~~~~L~~L~l  267 (402)
                      .....--..+..|+.|..+.+.......+.+..+.+.+          |+.+.+..|...+   +.+....++.|+.+++
T Consensus       284 ~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~----------L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~  353 (483)
T KOG4341|consen  284 EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN----------LQVLELSGCQQFSDRGFTMLGRNCPHLERLDL  353 (483)
T ss_pred             hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc----------eEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence            22222223355666666664443333334444444443          3344444333211   1111115677777777


Q ss_pred             ccccCcccC---cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccC-ccCCC
Q 045968          268 VLCHKLKDV---TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK-PLPFT  343 (402)
Q Consensus       268 ~~~~~l~~l---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~  343 (402)
                      ..|-.+++-   ....+++.|+.|.++.|..+++....       ...........|+.+.+++|+.+.+-... .-.++
T Consensus       354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~-------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR-------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh-------hhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            777444442   12235677777777777776655210       11123345566777777777766443322 23367


Q ss_pred             CccEEEecCCCCCCC
Q 045968          344 RLKEMAVLGCDQLEK  358 (402)
Q Consensus       344 ~L~~L~i~~c~~L~~  358 (402)
                      +|+.+++..|....+
T Consensus       427 ~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  427 NLERIELIDCQDVTK  441 (483)
T ss_pred             ccceeeeechhhhhh
Confidence            777777766666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.5e-09  Score=100.89  Aligned_cols=182  Identities=18%  Similarity=0.154  Sum_probs=85.0

Q ss_pred             ccCCCCCEEEccCCCcccccccc--ccccccccccEEEecCCCCccc---cHhhhcCCCCcEEEccCCCCccccc-hhhh
Q 045968           85 QLMPSLKVLKMSNCGQGRLKLPV--GMSVLGSSLELLDISCTGITEL---PEELKKLVNLKCLNLRWTGALIRIP-RQLI  158 (402)
Q Consensus        85 ~~l~~L~~L~l~~~~~~i~~l~~--~~~~l~~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~~~-~~~l  158 (402)
                      .++++|++..+.++  .+...+.  ....++ +++.||+++|-+..+   -..+..+++|+.|+++. |.+.... ...-
T Consensus       118 sn~kkL~~IsLdn~--~V~~~~~~~~~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~  193 (505)
T KOG3207|consen  118 SNLKKLREISLDNY--RVEDAGIEEYSKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTT  193 (505)
T ss_pred             hhHHhhhheeecCc--cccccchhhhhhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccch
Confidence            34455666666666  4544432  233344 666666666644322   22244566666666666 3333211 1111


Q ss_pred             hCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccce
Q 045968          159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE  238 (402)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  238 (402)
                      ..++.|+.|.+..|.+.|.              ....-+..+|.|+.|.+..+...-+  .....+-...|+.|+|++++
T Consensus       194 ~~l~~lK~L~l~~CGls~k--------------~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSCGLSWK--------------DVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             hhhhhhheEEeccCCCCHH--------------HHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCc
Confidence            2355666666666666421              1222344456666666554321111  11111112233333333332


Q ss_pred             eeeEeccccccccCCCCccccccccEEecccccCcccCc--c------cccCCCCCEEeecCCcc
Q 045968          239 LEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--F------LVFAPNLKSLDLDGCDA  295 (402)
Q Consensus       239 L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~------~~~l~~L~~L~l~~c~~  295 (402)
                      +.+++.-        +..+.++.|+.|.++.| ++.++.  .      ...+++|++|++..|+.
T Consensus       258 li~~~~~--------~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  258 LIDFDQG--------YKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccccccc--------cccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence            2222110        11126777777777776 566542  1      24567777777777655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.72  E-value=1.6e-09  Score=96.13  Aligned_cols=106  Identities=25%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCc
Q 045968           61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLK  140 (402)
Q Consensus        61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~  140 (402)
                      .++.|+++++++| .+..+..+ .+-.|.+|.|+++.|  .+..+.. +..+. +|++||+++|.+.++.-+-..+.|++
T Consensus       282 TWq~LtelDLS~N-~I~~iDES-vKL~Pkir~L~lS~N--~i~~v~n-La~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  282 TWQELTELDLSGN-LITQIDES-VKLAPKLRRLILSQN--RIRTVQN-LAELP-QLQLLDLSGNLLAECVGWHLKLGNIK  355 (490)
T ss_pred             hHhhhhhcccccc-chhhhhhh-hhhccceeEEecccc--ceeeehh-hhhcc-cceEeecccchhHhhhhhHhhhcCEe
Confidence            3444555555554 44444444 444555555555555  4443322 33344 55555555554444433333444555


Q ss_pred             EEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          141 CLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       141 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      .|.+.+ |.++.+.-  ++++-+|..|++.++.+.
T Consensus       356 tL~La~-N~iE~LSG--L~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  356 TLKLAQ-NKIETLSG--LRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eeehhh-hhHhhhhh--hHhhhhheeccccccchh
Confidence            555555 34444432  444455555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.67  E-value=3.4e-09  Score=94.10  Aligned_cols=132  Identities=20%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             hccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCC
Q 045968           84 FQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSR  163 (402)
Q Consensus        84 ~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  163 (402)
                      +...+.|+.+++++|  .|+.+..++.-.+ .++.|+++.|++..+.. +..+++|.+||+++ |.++.+.-. =.++.|
T Consensus       280 ~dTWq~LtelDLS~N--~I~~iDESvKL~P-kir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gw-h~KLGN  353 (490)
T KOG1259|consen  280 ADTWQELTELDLSGN--LITQIDESVKLAP-KLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGW-HLKLGN  353 (490)
T ss_pred             cchHhhhhhcccccc--chhhhhhhhhhcc-ceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhh-HhhhcC
Confidence            344567899999999  8888877776555 99999999998887754 88889999999988 677766542 346788


Q ss_pred             CcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEecccee
Q 045968          164 LRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFEL  239 (402)
Q Consensus       164 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L  239 (402)
                      .++|.+.++.+.                 .+..+.++-.|..|++.++..+..+...+... .++|+.+.+.+|.|
T Consensus       354 IKtL~La~N~iE-----------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  354 IKTLKLAQNKIE-----------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNPL  411 (490)
T ss_pred             EeeeehhhhhHh-----------------hhhhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCCc
Confidence            888888887764                 34556667777788888777766666554443 45777776666643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.67  E-value=9.2e-10  Score=105.33  Aligned_cols=169  Identities=24%  Similarity=0.280  Sum_probs=131.9

Q ss_pred             ccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEE
Q 045968           41 ENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELL  119 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L  119 (402)
                      ......+++.|.+.++|.- ..|..|..+.+..| .+..+|.. +..+..|.+|+++.|  .++.+|..++.++  |+.|
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~ls~N--qlS~lp~~lC~lp--Lkvl  148 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDLSSN--QLSHLPDGLCDLP--LKVL  148 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhhccc--hhhcCChhhhcCc--ceeE
Confidence            3455677778877777755 67788888888877 77778877 888999999999999  8999988888876  9999


Q ss_pred             EecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          120 DISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       120 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      -+++|++..+|..++.+.+|..|+.+. +.+..+|.. ++++.+|+.|++..+....                ...++..
T Consensus       149 i~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l~~----------------lp~El~~  210 (722)
T KOG0532|consen  149 IVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHLED----------------LPEELCS  210 (722)
T ss_pred             EEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhhhh----------------CCHHHhC
Confidence            999999999999999889999999988 578888886 8899999999988887753                3345555


Q ss_pred             CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc
Q 045968          200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF  237 (402)
Q Consensus       200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (402)
                      |+ |..|+++++....   ++.....+++|+.|-|++|
T Consensus       211 Lp-Li~lDfScNkis~---iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  211 LP-LIRLDFSCNKISY---LPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             Cc-eeeeecccCceee---cchhhhhhhhheeeeeccC
Confidence            55 6778887555444   4444555667777777776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.65  E-value=2.3e-08  Score=90.68  Aligned_cols=242  Identities=18%  Similarity=0.198  Sum_probs=139.3

Q ss_pred             CCccCCccceEEEccCCcccc-----c-CCCCCCCccceEecccc--cc-ccccc------hHHhccCCCCCEEEccCCC
Q 045968           35 PDVKGWENVRRLSLMQNQIET-----V-SEVPTCPHLLTLFLDFN--QE-LEMIA------DGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        35 ~~~~~~~~l~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~--~~-l~~~~------~~~~~~l~~L~~L~l~~~~   99 (402)
                      +.......+..+++++|.+-.     + +.+...++|+..++++-  .. ...+|      ...+..+++|++++|++|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            455566788889999986642     2 22256668888877653  11 12233      2335777889999999885


Q ss_pred             cccccc---ccccccccccccEEEecCCCCccccH--------------hhhcCCCCcEEEccCCCCccccch----hhh
Q 045968          100 QGRLKL---PVGMSVLGSSLELLDISCTGITELPE--------------ELKKLVNLKCLNLRWTGALIRIPR----QLI  158 (402)
Q Consensus       100 ~~i~~l---~~~~~~l~~~L~~L~L~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~~~----~~l  158 (402)
                      |....+   -.-+..+. .|++|.|.+|++....-              .+..-++|+.+.... |.+.+.+.    .++
T Consensus       104 ~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCT-DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAF  181 (382)
T ss_pred             cCccchHHHHHHHHhcc-CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHH
Confidence            333332   12245566 88888888887763211              123446788887777 55555432    235


Q ss_pred             hCCCCCcEEEeeeecccccccCCCcccccCCcc-hhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc
Q 045968          159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGE-VLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF  237 (402)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (402)
                      ...+.|+.+++..+.+...            +. .....+..+++|+.|++..+-...-....-.               
T Consensus       182 ~~~~~leevr~~qN~I~~e------------G~~al~eal~~~~~LevLdl~DNtft~egs~~La---------------  234 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPE------------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA---------------  234 (382)
T ss_pred             HhccccceEEEecccccCc------------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHH---------------
Confidence            6677888888877776531            22 2345577778888877764322211110000               


Q ss_pred             eeeeEeccccccccCCCCccccccccEEecccccCcccC------ccc-ccCCCCCEEeecCCcchHHHhhcCCCCCCcc
Q 045968          238 ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV------TFL-VFAPNLKSLDLDGCDAMEEIISVGKFAETPE  310 (402)
Q Consensus       238 ~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l------~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  310 (402)
                                   ...  + .+++|+.|++++| .+.+-      ..+ ..+|.|+.|.+.+|..-.+-..        .
T Consensus       235 -------------kaL--~-s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~  289 (382)
T KOG1909|consen  235 -------------KAL--S-SWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------A  289 (382)
T ss_pred             -------------HHh--c-ccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------H
Confidence                         001  1 5667888888888 55542      111 2467888888877655433321        1


Q ss_pred             ccCCCCCCCccceeecCccc
Q 045968          311 MMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       311 ~~~~~~~l~~L~~L~l~~c~  330 (402)
                      ........|.|+.|.|++|.
T Consensus       290 la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  290 LAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHhcchhhHHhcCCccc
Confidence            11233446777777777653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.61  E-value=3.8e-08  Score=95.57  Aligned_cols=120  Identities=30%  Similarity=0.383  Sum_probs=63.6

Q ss_pred             EEccCCcc-cccCCCCCCCccceEeccccccccccchHHhccCC-CCCEEEccCCCccccccccccccccccccEEEecC
Q 045968           46 LSLMQNQI-ETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMP-SLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISC  123 (402)
Q Consensus        46 L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~  123 (402)
                      +....+.+ .........+.++.+.+.++ .+.++++. ..... +|+.|+++++  .+..+|..+..++ +|+.|+++.
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N--~i~~l~~~~~~l~-~L~~L~l~~  172 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDN--KIESLPSPLRNLP-NLKNLDLSF  172 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCc-ccccCccc-cccchhhccccccccc--chhhhhhhhhccc-cccccccCC
Confidence            44444443 22333344455556655555 55555553 33332 5666666666  5555554455555 666666666


Q ss_pred             CCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeee
Q 045968          124 TGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI  172 (402)
Q Consensus       124 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  172 (402)
                      |.+..+|...+..++|+.|++++ +.++.+|.. +.....|++|.+..+
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~-~~~~~~L~~l~~~~N  219 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPE-IELLSALEELDLSNN  219 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccC-CccccCchh-hhhhhhhhhhhhcCC
Confidence            66666655554556666666666 455555553 334444666655555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=3.7e-09  Score=93.80  Aligned_cols=184  Identities=19%  Similarity=0.173  Sum_probs=121.4

Q ss_pred             CCcEEEccCCCCcccc-chhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhh
Q 045968          138 NLKCLNLRWTGALIRI-PRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHAL  216 (402)
Q Consensus       138 ~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  216 (402)
                      .|+++|++. ..++.- -...++.|.+|+.|.+.+...               ++.....+..-.+|+.|+++++..-.-
T Consensus       186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~L---------------dD~I~~~iAkN~~L~~lnlsm~sG~t~  249 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRL---------------DDPIVNTIAKNSNLVRLNLSMCSGFTE  249 (419)
T ss_pred             hhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccccc---------------CcHHHHHHhccccceeeccccccccch
Confidence            588999988 455541 123477899999999998887               556777888889999999997654333


Q ss_pred             HhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccC-c--ccCcc-cccCCCCCEEeecC
Q 045968          217 QILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHK-L--KDVTF-LVFAPNLKSLDLDG  292 (402)
Q Consensus       217 ~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l--~~l~~-~~~l~~L~~L~l~~  292 (402)
                      .........++.|..|++++|.+..=.+      +..-.. --++|+.|++++|.. +  .++.. ...+|+|.+||+++
T Consensus       250 n~~~ll~~scs~L~~LNlsWc~l~~~~V------tv~V~h-ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD  322 (419)
T KOG2120|consen  250 NALQLLLSSCSRLDELNLSWCFLFTEKV------TVAVAH-ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD  322 (419)
T ss_pred             hHHHHHHHhhhhHhhcCchHhhccchhh------hHHHhh-hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence            3333334445555555444442211111      111111 357899999999843 2  22333 34799999999999


Q ss_pred             CcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc-ccccCccCCCCccEEEecCCCC
Q 045968          293 CDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE-SIYWKPLPFTRLKEMAVLGCDQ  355 (402)
Q Consensus       293 c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~i~~~~~~~~~L~~L~i~~c~~  355 (402)
                      |..++.-..           ..+-.|+.|++|.+++|-.+. .-.......|+|.+|++.+|-.
T Consensus       323 ~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  323 SVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            998876432           356789999999999997651 1112334579999999987754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.58  E-value=6e-08  Score=94.16  Aligned_cols=193  Identities=27%  Similarity=0.332  Sum_probs=131.1

Q ss_pred             eEeccccccc-cccchHHhccCCCCCEEEccCCCccccccccccccc-cccccEEEecCCCCccccHhhhcCCCCcEEEc
Q 045968           67 TLFLDFNQEL-EMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVL-GSSLELLDISCTGITELPEELKKLVNLKCLNL  144 (402)
Q Consensus        67 ~L~l~~~~~l-~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l-~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l  144 (402)
                      .+....+ .+ .++..  +...+.+..|++.++  .+.+++...... . +|+.|++++|.+..+|..++.+++|+.|++
T Consensus        97 ~l~~~~~-~~~~~~~~--~~~~~~l~~L~l~~n--~i~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l  170 (394)
T COG4886          97 SLDLNLN-RLRSNISE--LLELTNLTSLDLDNN--NITDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDL  170 (394)
T ss_pred             eeecccc-ccccCchh--hhcccceeEEecCCc--ccccCccccccchh-hcccccccccchhhhhhhhhcccccccccc
Confidence            4666665 33 33333  566788999999999  899987766655 4 899999999999999888999999999999


Q ss_pred             cCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhh
Q 045968          145 RWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNK  224 (402)
Q Consensus       145 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  224 (402)
                      .. +.+.+++.. ....++|+.|+++++.+...+                .......+|+++.+..+......   ....
T Consensus       171 ~~-N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~----------------~~~~~~~~L~~l~~~~N~~~~~~---~~~~  229 (394)
T COG4886         171 SF-NDLSDLPKL-LSNLSNLNNLDLSGNKISDLP----------------PEIELLSALEELDLSNNSIIELL---SSLS  229 (394)
T ss_pred             CC-chhhhhhhh-hhhhhhhhheeccCCccccCc----------------hhhhhhhhhhhhhhcCCcceecc---hhhh
Confidence            99 688999874 448999999999999886321                11133444777777655311111   1111


Q ss_pred             hcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchH
Q 045968          225 LKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAME  297 (402)
Q Consensus       225 ~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~  297 (402)
                      ...          ++..+.+.+......+.....++.++.|+++++ .+++++.++.+.+|+.|+++++....
T Consensus       230 ~~~----------~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         230 NLK----------NLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             hcc----------cccccccCCceeeeccchhccccccceeccccc-cccccccccccCccCEEeccCccccc
Confidence            111          233333333332221111115777999999888 78888878888999999998865543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.54  E-value=8.4e-08  Score=66.51  Aligned_cols=59  Identities=34%  Similarity=0.450  Sum_probs=34.1

Q ss_pred             CccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCC
Q 045968           63 PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTG  125 (402)
Q Consensus        63 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~  125 (402)
                      |+|++|.+++| .+..++...|..+++|++|++++|  .++.+ +..|..++ +|++|++++|.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N--~l~~i~~~~f~~l~-~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN--NLTSIPPDAFSNLP-NLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS--SESEEETTTTTTST-TESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC--ccCccCHHHHcCCC-CCCEEeCcCCc
Confidence            35566666655 555665555666666666666666  55555 33455555 66666666554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.49  E-value=1.1e-07  Score=65.88  Aligned_cols=59  Identities=34%  Similarity=0.501  Sum_probs=34.4

Q ss_pred             ccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeec
Q 045968          114 SSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIG  173 (402)
Q Consensus       114 ~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  173 (402)
                      |+|++|++++|++..+|.. +..+++|++|++++ +.++.++..++.++++|++|++.+|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3566666666666655543 45566666666665 45555555556666666666665553

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.42  E-value=3.6e-08  Score=94.69  Aligned_cols=133  Identities=24%  Similarity=0.319  Sum_probs=105.4

Q ss_pred             CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968           36 DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS  115 (402)
Q Consensus        36 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~  115 (402)
                      .+..+..+..++++.|.+..+|.-.+..-|+.|.++.| ++..+|.. ++..+.|..|+.+.|  .+..+|..++.+. +
T Consensus       116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~n--ei~slpsql~~l~-s  190 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKN--EIQSLPSQLGYLT-S  190 (722)
T ss_pred             hhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecC-ccccCCcc-cccchhHHHhhhhhh--hhhhchHHhhhHH-H
Confidence            34555667777888888887777777777888888866 77777777 677788888888888  7888888888888 8


Q ss_pred             ccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968          116 LELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       116 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                      |+.|++..|.+..+|..+. .-.|..||++. |++..+|.. +++|..|++|-+..|...+
T Consensus       191 lr~l~vrRn~l~~lp~El~-~LpLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  191 LRDLNVRRNHLEDLPEELC-SLPLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHHHHhhhhhhhCCHHHh-CCceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCCCC
Confidence            8888888888888888877 44688888876 788888887 8889999999888887653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.30  E-value=8.3e-08  Score=93.63  Aligned_cols=106  Identities=27%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCc
Q 045968           61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLK  140 (402)
Q Consensus        61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~  140 (402)
                      .+..++.+.+..+ .+..+... +..+++|+.|++.+|  .+..+...+..+. +|++|++++|.|..+ .++..++.|+
T Consensus        70 ~l~~l~~l~l~~n-~i~~~~~~-l~~~~~l~~l~l~~n--~i~~i~~~l~~~~-~L~~L~ls~N~I~~i-~~l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQN-LIAKILNH-LSKLKSLEALDLYDN--KIEKIENLLSSLV-NLQVLDLSFNKITKL-EGLSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchh-hhhhhhcc-cccccceeeeecccc--chhhcccchhhhh-cchheeccccccccc-cchhhccchh
Confidence            4455555555555 44442222 566777777777777  6776644355566 777777777777766 4566666777


Q ss_pred             EEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          141 CLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       141 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      .|++.+ |.++.+..  +..+++|+.+++.++.+.
T Consensus       144 ~L~l~~-N~i~~~~~--~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  144 ELNLSG-NLISDISG--LESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             hheecc-CcchhccC--CccchhhhcccCCcchhh
Confidence            777777 56666654  556777777777777664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=2.2e-07  Score=82.66  Aligned_cols=209  Identities=16%  Similarity=0.114  Sum_probs=117.9

Q ss_pred             ccCCCCCEEEccCCCcccccccc---ccccccccccEEEecCCCCc----cccHhhhcCCCCcEEEccCCCC-ccccchh
Q 045968           85 QLMPSLKVLKMSNCGQGRLKLPV---GMSVLGSSLELLDISCTGIT----ELPEELKKLVNLKCLNLRWTGA-LIRIPRQ  156 (402)
Q Consensus        85 ~~l~~L~~L~l~~~~~~i~~l~~---~~~~l~~~L~~L~L~~~~l~----~lp~~i~~l~~L~~L~l~~~~~-~~~~~~~  156 (402)
                      ..+..++.+++.+|  .++++..   -+.+++ .|++|+++.|.+.    ++|   ....+|+.|-+.++.. ++.... 
T Consensus        68 ~~~~~v~elDL~~N--~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s-  140 (418)
T KOG2982|consen   68 SSVTDVKELDLTGN--LISDWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTS-  140 (418)
T ss_pred             HHhhhhhhhhcccc--hhccHHHHHHHHhcCc-cceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhh-
Confidence            44667777777777  6765532   223444 7777777777554    333   2335777777777432 222332 


Q ss_pred             hhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEecc
Q 045968          157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDG  236 (402)
Q Consensus       157 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  236 (402)
                      .+..++.+++|+++.|.......          +....+.  --+.+++|++..|............+..+++..+.+..
T Consensus       141 ~l~~lP~vtelHmS~N~~rq~n~----------Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e  208 (418)
T KOG2982|consen  141 SLDDLPKVTELHMSDNSLRQLNL----------DDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE  208 (418)
T ss_pred             hhhcchhhhhhhhccchhhhhcc----------ccccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence            26677777888777775432110          1111111  12345666666555554444444555555666665555


Q ss_pred             ceeeeEeccccccccCCCCccccccccEEecccccCccc---CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccC
Q 045968          237 FELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKD---VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMG  313 (402)
Q Consensus       237 ~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  313 (402)
                      |.|+++.-..  .      .+.+|.+-.|.++.. ++.+   +..+..++.|.-|.+.+++..+.+..+    ++  -.-
T Consensus       209 ~PlK~~s~ek--~------se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~----er--r~l  273 (418)
T KOG2982|consen  209 GPLKTESSEK--G------SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG----ER--RFL  273 (418)
T ss_pred             Ccccchhhcc--c------CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccCC----cc--eEE
Confidence            5555442211  1      114666667777665 5555   457788999999999998877655321    10  012


Q ss_pred             CCCCCCccceeecC
Q 045968          314 HISPFENLQRLNLE  327 (402)
Q Consensus       314 ~~~~l~~L~~L~l~  327 (402)
                      .++.+++++.|+=+
T Consensus       274 lIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  274 LIARLTKVQVLNGS  287 (418)
T ss_pred             EEeeccceEEecCc
Confidence            56778888887533

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.21  E-value=1.4e-07  Score=92.08  Aligned_cols=127  Identities=27%  Similarity=0.341  Sum_probs=91.0

Q ss_pred             CccceEEEccCCccccc-CCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968           40 WENVRRLSLMQNQIETV-SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL  118 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~  118 (402)
                      +..++.+.+..+.+..+ .....+++|..+++.+| .+..+... +..+++|++|++++|  .|+.+. .+..+. .|+.
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N--~I~~i~-~l~~l~-~L~~  144 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFN--KITKLE-GLSTLT-LLKE  144 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccc-hhhhhcchheecccc--cccccc-chhhcc-chhh
Confidence            45566666777777763 33577888888888877 66666554 567888888888888  787763 345566 7888


Q ss_pred             EEecCCCCccccHhhhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeeccc
Q 045968          119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  175 (402)
                      |++++|.+..+ ..+..+.+|+.+++++ +.+..+.. . ...+.+++.+.+.++.+.
T Consensus       145 L~l~~N~i~~~-~~~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  145 LNLSGNLISDI-SGLESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             heeccCcchhc-cCCccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCchh
Confidence            88888888766 3455578888888888 56666654 2 367788888888877765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.16  E-value=1.2e-06  Score=79.66  Aligned_cols=13  Identities=8%  Similarity=-0.000  Sum_probs=8.3

Q ss_pred             ccccccEEecccc
Q 045968          258 VFRNLHRVTMVLC  270 (402)
Q Consensus       258 ~~~~L~~L~l~~~  270 (402)
                      ..+.|+.|.+++|
T Consensus       296 ek~dL~kLnLngN  308 (382)
T KOG1909|consen  296 EKPDLEKLNLNGN  308 (382)
T ss_pred             cchhhHHhcCCcc
Confidence            3566666666666

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.08  E-value=1.3e-06  Score=86.87  Aligned_cols=240  Identities=24%  Similarity=0.232  Sum_probs=119.7

Q ss_pred             hccCCCCCEEEccCCCccccc--cccccccccccccEEEecCC--CCcccc----HhhhcCCCCcEEEccCCCCccccch
Q 045968           84 FQLMPSLKVLKMSNCGQGRLK--LPVGMSVLGSSLELLDISCT--GITELP----EELKKLVNLKCLNLRWTGALIRIPR  155 (402)
Q Consensus        84 ~~~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~~L~~L~L~~~--~l~~lp----~~i~~l~~L~~L~l~~~~~~~~~~~  155 (402)
                      ...+++|+.+.+..|. .+..  +-.....++ +|+.|+++++  .....+    .....+.+|+.+++..|..+++...
T Consensus       184 ~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCS-KITDDSLDALALKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             HhhCchhhHhhhcccc-cCChhhHHHHHhhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            4456778888777774 4444  222233444 7888888763  111111    1234557788888887765666544


Q ss_pred             hhhh-CCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEe
Q 045968          156 QLIS-KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCL  234 (402)
Q Consensus       156 ~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l  234 (402)
                      ..+. .+++|++|.+..|....             +.....-...++.|+.|+++++.......+......+++++.+.+
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt-------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLT-------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccc-------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            3343 37788888876666421             333334445577788888876554433333333333444444332


Q ss_pred             ccc----eeeeEeccccccccCCCCcccc-ccccEEecccccCcccCc--ccccCCCCC-EEeecCCcch-HHHhhcCCC
Q 045968          235 DGF----ELEELKIDYTEIVRKRREPFVF-RNLHRVTMVLCHKLKDVT--FLVFAPNLK-SLDLDGCDAM-EEIISVGKF  305 (402)
Q Consensus       235 ~~~----~L~~L~i~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~--~~~~l~~L~-~L~l~~c~~l-~~~~~~~~~  305 (402)
                      ..+    .++.+.+..+..        .. ..+..+.+.+|+.++++.  ..+ ..... .+.+.+|+.+ ..+.     
T Consensus       329 ~~~~~c~~l~~~~l~~~~~--------~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~-----  394 (482)
T KOG1947|consen  329 LSLNGCPSLTDLSLSGLLT--------LTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLE-----  394 (482)
T ss_pred             hhcCCCccHHHHHHHHhhc--------cCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHH-----
Confidence            221    133333322211        11 123333333333333321  111 11111 4455666655 2221     


Q ss_pred             CCCccccCCCCCCCccceeecCccccccccccC--ccCCCCccEEEecCCCCCCCC
Q 045968          306 AETPEMMGHISPFENLQRLNLEDLPNLESIYWK--PLPFTRLKEMAVLGCDQLEKL  359 (402)
Q Consensus       306 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~--~~~~~~L~~L~i~~c~~L~~l  359 (402)
                             .....+..++.|.++.|.....-...  ...+..++.+++.+|+.+...
T Consensus       395 -------~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  395 -------LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             -------HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence                   12233333788888887655333222  111567777777777776644

>PLN03150 hypothetical protein; Provisional

Probab=98.08  E-value=1.2e-05  Score=82.50  Aligned_cols=86  Identities=28%  Similarity=0.424  Sum_probs=41.3

Q ss_pred             cceEecccccccc-ccchHHhccCCCCCEEEccCCCcccc-ccccccccccccccEEEecCCCCc-cccHhhhcCCCCcE
Q 045968           65 LLTLFLDFNQELE-MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELLDISCTGIT-ELPEELKKLVNLKC  141 (402)
Q Consensus        65 L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~  141 (402)
                      ++.|++.+| .+. .+|.. +..+++|+.|++++|  .+. .+|..++.+. +|++|++++|.+. .+|..++++++|+.
T Consensus       420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N--~l~g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGN--SIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCC--cccCcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence            444445544 222 23333 455555555555555  444 3344455554 5555555555544 34555555555555


Q ss_pred             EEccCCCCccccch
Q 045968          142 LNLRWTGALIRIPR  155 (402)
Q Consensus       142 L~l~~~~~~~~~~~  155 (402)
                      |++++|.....+|.
T Consensus       495 L~Ls~N~l~g~iP~  508 (623)
T PLN03150        495 LNLNGNSLSGRVPA  508 (623)
T ss_pred             EECcCCcccccCCh
Confidence            55555333233444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.01  E-value=2.5e-07  Score=91.42  Aligned_cols=108  Identities=27%  Similarity=0.274  Sum_probs=52.1

Q ss_pred             hccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCC
Q 045968           84 FQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSR  163 (402)
Q Consensus        84 ~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  163 (402)
                      ++-++.|+.|++++|  ++.... .+..+. +|++|||+.|.+..+|..-..-.+|+.|.+++ |.++.+..  +.++.+
T Consensus       183 Lqll~ale~LnLshN--k~~~v~-~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g--ie~Lks  255 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHN--KFTKVD-NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG--IENLKS  255 (1096)
T ss_pred             HHHHHHhhhhccchh--hhhhhH-HHHhcc-cccccccccchhccccccchhhhhheeeeecc-cHHHhhhh--HHhhhh
Confidence            444455555555555  444443 344444 55555555555555443211112355555555 34444432  455555


Q ss_pred             CcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968          164 LRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS  212 (402)
Q Consensus       164 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  212 (402)
                      |+.|++++|-+.              ....+..+..+..|+.|.+.++.
T Consensus       256 L~~LDlsyNll~--------------~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  256 LYGLDLSYNLLS--------------EHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhccchhHhhhh--------------cchhhhHHHHHHHHHHHhhcCCc
Confidence            555555555443              22333444445555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.97  E-value=1.4e-05  Score=51.00  Aligned_cols=40  Identities=45%  Similarity=0.580  Sum_probs=27.1

Q ss_pred             cccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccch
Q 045968          115 SLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR  155 (402)
Q Consensus       115 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~  155 (402)
                      +|++|++++|++..+|..+.++++|+.|++++ +.+++++.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDISP   41 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence            67777777777777776677777777777777 46666553

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=2.3e-06  Score=76.37  Aligned_cols=225  Identities=18%  Similarity=0.152  Sum_probs=126.0

Q ss_pred             CCCEEEccCCCcccccc--ccccccccccccEEEecCCCCcc---ccHhhhcCCCCcEEEccCCCCccc-cchhhh-hCC
Q 045968           89 SLKVLKMSNCGQGRLKL--PVGMSVLGSSLELLDISCTGITE---LPEELKKLVNLKCLNLRWTGALIR-IPRQLI-SKF  161 (402)
Q Consensus        89 ~L~~L~l~~~~~~i~~l--~~~~~~l~~~L~~L~L~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~l-~~l  161 (402)
                      -++.|.+.+|  .+...  ...|+.....++.|||.+|.+..   +...+.+++.|++|+++.+ .+.. +..  + --.
T Consensus        46 a~ellvln~~--~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~--lp~p~  120 (418)
T KOG2982|consen   46 ALELLVLNGS--IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKS--LPLPL  120 (418)
T ss_pred             chhhheecCC--CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCcccc--Ccccc
Confidence            4556667777  55543  22233322389999999998874   4445789999999999884 4332 221  1 235


Q ss_pred             CCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhh-hhhhhcccceeeEeccceee
Q 045968          162 SRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILL-SSNKLKSCIRSLCLDGFELE  240 (402)
Q Consensus       162 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~L~  240 (402)
                      .+|+.|-+.+....|.              ..-..+..+|.++.|+++.+....+..-. ......+          .+.
T Consensus       121 ~nl~~lVLNgT~L~w~--------------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~----------~v~  176 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWT--------------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWST----------EVL  176 (418)
T ss_pred             cceEEEEEcCCCCChh--------------hhhhhhhcchhhhhhhhccchhhhhccccccccccch----------hhh
Confidence            6889998888877652              12234666777777777644221110000 0000111          223


Q ss_pred             eEeccccccccCCCC---ccccccccEEecccccCcccCc---ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCC
Q 045968          241 ELKIDYTEIVRKRRE---PFVFRNLHRVTMVLCHKLKDVT---FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGH  314 (402)
Q Consensus       241 ~L~i~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  314 (402)
                      +++...|...-|...   ...||++..+.+..| -+++..   ....+|.+-.|.+..+. +.++          ...+.
T Consensus       177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~-PlK~~s~ek~se~~p~~~~LnL~~~~-idsw----------asvD~  244 (418)
T KOG2982|consen  177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG-PLKTESSEKGSEPFPSLSCLNLGANN-IDSW----------ASVDA  244 (418)
T ss_pred             hhhcCCcHHHHHHHHHhHHhhcccchheeeecC-cccchhhcccCCCCCcchhhhhcccc-cccH----------HHHHH
Confidence            333333322111111   115888888888777 354442   34456777777777643 3333          23357


Q ss_pred             CCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCC
Q 045968          315 ISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKL  359 (402)
Q Consensus       315 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~l  359 (402)
                      +.+||.|..|.+.+.|-+..+...     .=+.|-|...++++-+
T Consensus       245 Ln~f~~l~dlRv~~~Pl~d~l~~~-----err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  245 LNGFPQLVDLRVSENPLSDPLRGG-----ERRFLLIARLTKVQVL  284 (418)
T ss_pred             HcCCchhheeeccCCcccccccCC-----cceEEEEeeccceEEe
Confidence            788899999988888877665442     2234444444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.88  E-value=9.9e-06  Score=83.09  Aligned_cols=31  Identities=42%  Similarity=0.590  Sum_probs=14.8

Q ss_pred             cccEEEecCCCCccccHhhhcCCCCcEEEccC
Q 045968          115 SLELLDISCTGITELPEELKKLVNLKCLNLRW  146 (402)
Q Consensus       115 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~  146 (402)
                      +|..||+|++++..+ .+++++.+|+.|.+.+
T Consensus       174 NL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  174 NLRSLDISGTNISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             ccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence            444555555444444 4444444444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=1.1e-05  Score=82.76  Aligned_cols=105  Identities=24%  Similarity=0.307  Sum_probs=83.6

Q ss_pred             CCCCEEEccCCCcccc-ccccccccccccccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCC
Q 045968           88 PSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL  164 (402)
Q Consensus        88 ~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  164 (402)
                      .+|++|++++.. .+. .+|..++.+.|.|+.|.+++-.+.  ++-.-..+++||..|||++ .+++.+ .+ ++++++|
T Consensus       122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~G-IS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SG-ISRLKNL  197 (699)
T ss_pred             HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HH-HhccccH
Confidence            579999999985 333 567778877779999999997554  2333467899999999999 577877 33 9999999


Q ss_pred             cEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEe
Q 045968          165 RVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSL  210 (402)
Q Consensus       165 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  210 (402)
                      +.|.+.+-.+.              ....+.++..|++|+.|+++.
T Consensus       198 q~L~mrnLe~e--------------~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  198 QVLSMRNLEFE--------------SYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             HHHhccCCCCC--------------chhhHHHHhcccCCCeeeccc
Confidence            99999877765              445677899999999999984

>PLN03150 hypothetical protein; Provisional

Probab=97.85  E-value=5.2e-05  Score=77.74  Aligned_cols=107  Identities=21%  Similarity=0.309  Sum_probs=86.2

Q ss_pred             cceEEEccCCcccc-cCC-CCCCCccceEecccccccc-ccchHHhccCCCCCEEEccCCCcccc-cccccccccccccc
Q 045968           42 NVRRLSLMQNQIET-VSE-VPTCPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLE  117 (402)
Q Consensus        42 ~l~~L~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~  117 (402)
                      .++.|++.++.+.. +|. +..+++|+.|++++| .+. .+|.. +..+++|+.|++++|  .++ .+|..++.+. +|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N--~lsg~iP~~l~~L~-~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYN--SFNGSIPESLGQLT-SLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCC--CCCCCCchHHhcCC-CCC
Confidence            47889999998864 343 378999999999999 554 57766 899999999999999  787 5688899999 999


Q ss_pred             EEEecCCCCc-cccHhhhcC-CCCcEEEccCCCCcccc
Q 045968          118 LLDISCTGIT-ELPEELKKL-VNLKCLNLRWTGALIRI  153 (402)
Q Consensus       118 ~L~L~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~~~  153 (402)
                      +|++++|.+. .+|..+... .++..+++.+|..+...
T Consensus       494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             EEECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence            9999999886 788887654 56788888886444333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.81  E-value=2.5e-05  Score=49.81  Aligned_cols=38  Identities=34%  Similarity=0.459  Sum_probs=21.6

Q ss_pred             CCCEEEccCCCccccccccccccccccccEEEecCCCCccc
Q 045968           89 SLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITEL  129 (402)
Q Consensus        89 ~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~l  129 (402)
                      +|++|++++|  .++++|..++.+. +|++|++++|.+.++
T Consensus         2 ~L~~L~l~~N--~i~~l~~~l~~l~-~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN--QITDLPPELSNLP-NLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSS--S-SSHGGHGTTCT-TSSEEEETSSCCSBE
T ss_pred             cceEEEccCC--CCcccCchHhCCC-CCCEEEecCCCCCCC
Confidence            4566666666  5666655555555 666666666665554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=4.6e-06  Score=66.09  Aligned_cols=107  Identities=18%  Similarity=0.234  Sum_probs=62.4

Q ss_pred             EEEccCCcccccCCC----CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968           45 RLSLMQNQIETVSEV----PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD  120 (402)
Q Consensus        45 ~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~  120 (402)
                      .++++.+.+-.+++.    ....+|+..++++| .+.+.|+.+-.+++-++.|++.+|  .++++|..+..++ .|+.|+
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n--eisdvPeE~Aam~-aLr~lN  106 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN--EISDVPEELAAMP-ALRSLN  106 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh--hhhhchHHHhhhH-Hhhhcc
Confidence            344444444333322    44555666666666 666666665566666666666666  6666666665555 666666


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccchh
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQ  156 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~  156 (402)
                      ++.|.+...|.-+..+.+|-.|+..+ +....+|..
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence            66666666666655566666666655 444445443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=0.00011  Score=70.02  Aligned_cols=62  Identities=23%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCC-CCccccH
Q 045968           61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCT-GITELPE  131 (402)
Q Consensus        61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~-~l~~lp~  131 (402)
                      .+.+++.|++++| .+..+|.  +  ..+|+.|.+.+|. .++.+|..+   +++|++|++++| .+..+|.
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~--L--P~sLtsL~Lsnc~-nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV--L--PNELTEITIENCN-NLTTLPGSI---PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC--C--CCCCcEEEccCCC-CcccCCchh---hhhhhheEccCccccccccc
Confidence            3566666666666 5555541  1  1246666666654 455555433   226666666665 5555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=5.6e-05  Score=64.00  Aligned_cols=98  Identities=24%  Similarity=0.363  Sum_probs=47.1

Q ss_pred             EEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc--cccccccccccEEEec
Q 045968           45 RLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP--VGMSVLGSSLELLDIS  122 (402)
Q Consensus        45 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~--~~~~~l~~~L~~L~L~  122 (402)
                      .+++.+|++-.++.++.++.|.+|.+..| .+..+.+..-.-+++|..|.+.+|  ++.++.  ..+..++ +|++|.+-
T Consensus        46 ~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN--si~~l~dl~pLa~~p-~L~~Ltll  121 (233)
T KOG1644|consen   46 AIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN--SIQELGDLDPLASCP-KLEYLTLL  121 (233)
T ss_pred             eecccccchhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCc--chhhhhhcchhccCC-ccceeeec
Confidence            35555555555555555555555555544 555555443344455555555555  444431  1122333 55555555


Q ss_pred             CCCCccccHh----hhcCCCCcEEEccC
Q 045968          123 CTGITELPEE----LKKLVNLKCLNLRW  146 (402)
Q Consensus       123 ~~~l~~lp~~----i~~l~~L~~L~l~~  146 (402)
                      +|.+.+-...    +..+++|+.||+.+
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            5544433221    34445555555433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=6.3e-05  Score=63.69  Aligned_cols=122  Identities=20%  Similarity=0.257  Sum_probs=66.8

Q ss_pred             EEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecC
Q 045968           45 RLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISC  123 (402)
Q Consensus        45 ~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~  123 (402)
                      .+++.+..+..+... .-..+...+++++| .+..++.  |..++.|..|.+.+|  .|+.+...+..+.|+|..|.+.+
T Consensus        23 e~~LR~lkip~ienlg~~~d~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nN--rIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   23 ELDLRGLKIPVIENLGATLDQFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNN--RITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccchhhccccccccceeccccc-chhhccc--CCCccccceEEecCC--cceeeccchhhhccccceEEecC
Confidence            444444444443332 23344556667766 5544443  666677777777777  67777555555555677777777


Q ss_pred             CCCccccH--hhhcCCCCcEEEccCCCCccccc---hhhhhCCCCCcEEEeeee
Q 045968          124 TGITELPE--ELKKLVNLKCLNLRWTGALIRIP---RQLISKFSRLRVLRMFAI  172 (402)
Q Consensus       124 ~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~  172 (402)
                      |.+.++.+  .+..+++|+.|.+-+ +.+++-.   .-++..+++|+.|++...
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhhh
Confidence            76665533  245556666666655 3333221   112445555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=0.00013  Score=69.44  Aligned_cols=85  Identities=21%  Similarity=0.368  Sum_probs=61.1

Q ss_pred             CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968           36 DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS  115 (402)
Q Consensus        36 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~  115 (402)
                      .+..+..+++|++++|.++.+|.+.  ++|++|.+.+|..+..+|.. +  .++|++|.+.+|. .+..+|       ++
T Consensus        47 r~~~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs-~L~sLP-------~s  113 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCP-EISGLP-------ES  113 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcc-cccccc-------cc
Confidence            3445688999999999888887432  36999999998788777764 3  3589999999985 454444       36


Q ss_pred             ccEEEecCCC---CccccHhh
Q 045968          116 LELLDISCTG---ITELPEEL  133 (402)
Q Consensus       116 L~~L~L~~~~---l~~lp~~i  133 (402)
                      |+.|+++.+.   +..+|..+
T Consensus       114 Le~L~L~~n~~~~L~~LPssL  134 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPNGL  134 (426)
T ss_pred             cceEEeCCCCCcccccCcchH
Confidence            7777777654   45566554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.62  E-value=2.6e-05  Score=77.47  Aligned_cols=242  Identities=21%  Similarity=0.236  Sum_probs=140.2

Q ss_pred             CCCCccceEeccccccccccc-hHHhccCCCCCEEEccCCCccccccc----cccccccccccEEEecCCC-CccccH-h
Q 045968           60 PTCPHLLTLFLDFNQELEMIA-DGFFQLMPSLKVLKMSNCGQGRLKLP----VGMSVLGSSLELLDISCTG-ITELPE-E  132 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~i~~l~----~~~~~l~~~L~~L~L~~~~-l~~lp~-~  132 (402)
                      ..+++|+.+.+..+..+.+.. ......++.|+.|++.+|...+...+    .....+. +|+.|+++++. ++...- .
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR-KLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC-CcCccchhhhhccCchhHHH
Confidence            458999999999887776632 33478899999999987310222212    2233455 99999999986 553321 2


Q ss_pred             -hhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEe
Q 045968          133 -LKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSL  210 (402)
Q Consensus       133 -i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  210 (402)
                       ...+++|+.|.+..|..+++... .+..++++|++|++.+|....             .........++++++.|.+..
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-------------d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-------------DSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-------------HHHHHHHHHhCcchhhhhhhh
Confidence             33488999999988876665433 234578999999999988752             222333345577777666543


Q ss_pred             cC-chhhHhh--hhhhhhc-ccceeeEeccc-eeeeEeccccccccCCCCccccccccEEecccccCcc-cCcc-cccCC
Q 045968          211 GS-YHALQIL--LSSNKLK-SCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK-DVTF-LVFAP  283 (402)
Q Consensus       211 ~~-~~~~~~~--~~~~~~~-~~L~~L~l~~~-~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~-~~~l~  283 (402)
                      .. +..+...  ....... ..+..+.+.++ +++.+.+..+.. ....        ..+.+.+|+.++ .+.. ...+.
T Consensus       331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~-~~~~--------~~~~l~gc~~l~~~l~~~~~~~~  401 (482)
T KOG1947|consen  331 LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI-SDLG--------LELSLRGCPNLTESLELRLCRSD  401 (482)
T ss_pred             cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc-cCcc--------hHHHhcCCcccchHHHHHhccCC
Confidence            22 1222211  1111111 13344444444 555555554431 1111        134555665552 2222 22233


Q ss_pred             CCCEEeecCCcchHHHhhcCCCCCCccccCCCCC-CCccceeecCcccccccc
Q 045968          284 NLKSLDLDGCDAMEEIISVGKFAETPEMMGHISP-FENLQRLNLEDLPNLESI  335 (402)
Q Consensus       284 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~c~~l~~i  335 (402)
                      .++.|++..|...+....           ..... +.+++.+.+.+|+.+...
T Consensus       402 ~l~~L~l~~~~~~t~~~l-----------~~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  402 SLRVLNLSDCRLVTDKGL-----------RCLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             ccceEecccCccccccch-----------HHHhhhhhccccCCccCcccccch
Confidence            489999999887665421           11111 677888888888766443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.46  E-value=1.8e-05  Score=62.75  Aligned_cols=109  Identities=27%  Similarity=0.324  Sum_probs=85.3

Q ss_pred             CCccceEeccccccccccch--HHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968           62 CPHLLTLFLDFNQELEMIAD--GFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL  139 (402)
Q Consensus        62 ~~~L~~L~l~~~~~l~~~~~--~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L  139 (402)
                      ...+..++++.| .+..++.  +.+.+-..|...++++|  .++.+|..|...+|.++.|++++|.+.++|..+..++.|
T Consensus        26 akE~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N--~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL  102 (177)
T KOG4579|consen   26 AKELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDN--GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL  102 (177)
T ss_pred             HHHhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccc--hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence            344566778877 5544442  33566677888899999  899998888766668999999999999999999999999


Q ss_pred             cEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          140 KCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       140 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      +.++++. |.+...|.- +..+.+|-.|+..++...
T Consensus       103 r~lNl~~-N~l~~~p~v-i~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  103 RSLNLRF-NPLNAEPRV-IAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhccccc-CccccchHH-HHHHHhHHHhcCCCCccc
Confidence            9999998 677777764 666888888887776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.35  E-value=5.8e-06  Score=82.05  Aligned_cols=127  Identities=24%  Similarity=0.298  Sum_probs=77.4

Q ss_pred             CccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968           40 WENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL  118 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~  118 (402)
                      |..|...++++|.+..+... .-++.|+.|++++| ++....  .+..|++|++|+++.|  .+..+|..-..-. +|+.
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN--~L~~vp~l~~~gc-~L~~  236 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYN--CLRHVPQLSMVGC-KLQL  236 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccc--hhccccccchhhh-hhee
Confidence            44555566666665544433 55677777777777 555544  3777777888887777  6666653211112 5777


Q ss_pred             EEecCCCCccccHhhhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecc
Q 045968          119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  174 (402)
                      |.+++|.++++ .++.++.+|+.||++. |.+..... .-+..+..|+.|.+.+|..
T Consensus       237 L~lrnN~l~tL-~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  237 LNLRNNALTTL-RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eeecccHHHhh-hhHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            77777777766 5677777777777777 33332111 1144566666666666644

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=4e-05  Score=68.00  Aligned_cols=101  Identities=24%  Similarity=0.171  Sum_probs=64.3

Q ss_pred             CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccH--hhhcCCC
Q 045968           61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPE--ELKKLVN  138 (402)
Q Consensus        61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~--~i~~l~~  138 (402)
                      .+.+++.|+..+| .+.+|  ++..+++.|++|.|+-|  .|+.+. .+..+. +|+.|.|..|.|.++.+  .+.++++
T Consensus        17 dl~~vkKLNcwg~-~L~DI--sic~kMp~lEVLsLSvN--kIssL~-pl~rCt-rLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDI--SICEKMPLLEVLSLSVN--KISSLA-PLQRCT-RLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCC-CccHH--HHHHhcccceeEEeecc--ccccch-hHHHHH-HHHHHHHHhcccccHHHHHHHhcCch
Confidence            3556666777776 66665  44677777777777777  777662 255666 77777777777766643  3667777


Q ss_pred             CcEEEccCCCCccccc----hhhhhCCCCCcEEE
Q 045968          139 LKCLNLRWTGALIRIP----RQLISKFSRLRVLR  168 (402)
Q Consensus       139 L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~  168 (402)
                      |+.|-|..|.-...-+    ..++.-+++|+.|+
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777766544333222    23355677777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.88  E-value=0.00052  Score=60.57  Aligned_cols=112  Identities=23%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccc-ccccccccccccccEEEecCCCCcccc--HhhhcC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELLDISCTGITELP--EELKKL  136 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~~lp--~~i~~l  136 (402)
                      ..+..|+.+.+.++ .+..+..  +..+++|+.|.+++|.+.++ .++.....++ +|++|++++|++..+-  ..+..+
T Consensus        40 d~~~~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   40 DEFVELELLSVINV-GLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             ccccchhhhhhhcc-ceeeccc--CCCcchhhhhcccCCcccccccceehhhhCC-ceeEEeecCCccccccccchhhhh
Confidence            44555666666644 4444333  67778888888888854443 4444444554 8999999988776431  235677


Q ss_pred             CCCcEEEccCCCCcc--ccchhhhhCCCCCcEEEeeeeccc
Q 045968          137 VNLKCLNLRWTGALI--RIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       137 ~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      .+|..|++..|....  .--..++.-+++|++|+-..+...
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence            788888888874322  222344566888888887665554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.00016  Score=64.30  Aligned_cols=94  Identities=22%  Similarity=0.311  Sum_probs=50.2

Q ss_pred             hHHHHHHHHhhhcccccCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccch-H
Q 045968            4 VIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIAD-G   82 (402)
Q Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~   82 (402)
                      |.++|....++.-...+...+.+.+-++++|.-+.+++.|+.|.++-|.|..+..+..|++|+.|.+..| .|.++.. .
T Consensus         4 LTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~   82 (388)
T KOG2123|consen    4 LTESMVYIRAKCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELE   82 (388)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHH
Confidence            4444444444431112223333444455555555666666666666666666666666666666666665 5554432 1


Q ss_pred             HhccCCCCCEEEccCC
Q 045968           83 FFQLMPSLKVLKMSNC   98 (402)
Q Consensus        83 ~~~~l~~L~~L~l~~~   98 (402)
                      .++++|+||.|.|..|
T Consensus        83 YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HHhcCchhhhHhhccC
Confidence            1456666666666655

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.71  E-value=0.006  Score=48.74  Aligned_cols=114  Identities=22%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             CccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccc
Q 045968           40 WENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSL  116 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L  116 (402)
                      +.+++.+.+.. .+..+...  ..+++|+.+.+..  .+..++...|..++.|+.+.+.++   +..+ ...|..+. +|
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~---~~~i~~~~F~~~~-~l   83 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNN---LKSIGDNAFSNCT-NL   83 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETST---T-EE-TTTTTT-T-TE
T ss_pred             CCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeeccccccccccccc---ccccccccccccc-cc
Confidence            34555555543 33334332  4445555555543  244455555555555666655432   2222 22333344 55


Q ss_pred             cEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCC
Q 045968          117 ELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRL  164 (402)
Q Consensus       117 ~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  164 (402)
                      +.+++..+ +..++.. +.++ +|+.+.+..  .+..++...+.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            55555443 3333332 3333 555555443  3334444444444444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.66  E-value=0.0038  Score=55.60  Aligned_cols=185  Identities=16%  Similarity=0.141  Sum_probs=113.8

Q ss_pred             CccceEEEccCCcccc-----cC-CCCCCCccceEeccccc--ccc-ccc------hHHhccCCCCCEEEccCCCccccc
Q 045968           40 WENVRRLSLMQNQIET-----VS-EVPTCPHLLTLFLDFNQ--ELE-MIA------DGFFQLMPSLKVLKMSNCGQGRLK  104 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~-----~~-~~~~~~~L~~L~l~~~~--~l~-~~~------~~~~~~l~~L~~L~l~~~~~~i~~  104 (402)
                      +..+..+++++|.|..     +. .+..-.+|+..+++...  ... .++      ..++-+||+|+..++++|.|... 
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~-  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE-  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc-
Confidence            5678889999997653     22 12556778887777531  111 122      23378899999999999953333 


Q ss_pred             cccc----cccccccccEEEecCCCCccc-----cHh---------hhcCCCCcEEEccCCCCccccch----hhhhCCC
Q 045968          105 LPVG----MSVLGSSLELLDISCTGITEL-----PEE---------LKKLVNLKCLNLRWTGALIRIPR----QLISKFS  162 (402)
Q Consensus       105 l~~~----~~~l~~~L~~L~L~~~~l~~l-----p~~---------i~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~  162 (402)
                      .|..    ++... .|.+|.+++|++.-+     ...         +.+-+.|+.+.... |.+.+.+.    ..+.+-.
T Consensus       108 ~~e~L~d~is~~t-~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~  185 (388)
T COG5238         108 FPEELGDLISSST-DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHE  185 (388)
T ss_pred             cchHHHHHHhcCC-CceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhc
Confidence            3333    34455 899999999987633     211         23457899998888 56665443    2234446


Q ss_pred             CCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhH--hhhhhhhhcccceeeEeccc
Q 045968          163 RLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQ--ILLSSNKLKSCIRSLCLDGF  237 (402)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~  237 (402)
                      +|+++.+..|.+...  +.        ....+..+..+++|+.|++..+......  .+......++.|+.|.+.+|
T Consensus       186 ~lk~vki~qNgIrpe--gv--------~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         186 NLKEVKIQQNGIRPE--GV--------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             CceeEEeeecCcCcc--hh--------HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            899999998887531  00        2234456778899999999854332221  12222334445566655555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.58  E-value=0.0015  Score=57.66  Aligned_cols=105  Identities=25%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             CCccceEEEccCCcccccCCCCCCCccceEecccc--ccccccchHHhccCCCCCEEEccCCCcccccc--ccccccccc
Q 045968           39 GWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFN--QELEMIADGFFQLMPSLKVLKMSNCGQGRLKL--PVGMSVLGS  114 (402)
Q Consensus        39 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l--~~~~~~l~~  114 (402)
                      .+..++.+++.+...+.+.....+++|+.|.++.|  .....++.. ...+|+|++|++++|  .+..+  ...+..+. 
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N--ki~~lstl~pl~~l~-  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN--KIKDLSTLRPLKELE-  116 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC--ccccccccchhhhhc-
Confidence            34567778887778777777889999999999988  333334444 566799999999999  66643  12245566 


Q ss_pred             cccEEEecCCCCccccHh----hhcCCCCcEEEccCC
Q 045968          115 SLELLDISCTGITELPEE----LKKLVNLKCLNLRWT  147 (402)
Q Consensus       115 ~L~~L~L~~~~l~~lp~~----i~~l~~L~~L~l~~~  147 (402)
                      +|..|++.+|....+-..    +.-+++|++|+-..+
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            899999999866654332    566789999986654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.09  E-value=0.008  Score=53.58  Aligned_cols=136  Identities=20%  Similarity=0.178  Sum_probs=75.4

Q ss_pred             CCccCCccceEEEccCCcccc-cCC-C----CCCCccceEeccccccccccchHH-------------hccCCCCCEEEc
Q 045968           35 PDVKGWENVRRLSLMQNQIET-VSE-V----PTCPHLLTLFLDFNQELEMIADGF-------------FQLMPSLKVLKM   95 (402)
Q Consensus        35 ~~~~~~~~l~~L~l~~~~~~~-~~~-~----~~~~~L~~L~l~~~~~l~~~~~~~-------------~~~l~~L~~L~l   95 (402)
                      +.+.+|++++.+++++|.+.. ++. .    ++-..|.+|.+.+| .+..+...-             ...-|.|++...
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            456677777777777776542 221 1    56677777777766 443322111             123456777777


Q ss_pred             cCCCccccccccc-----cccccccccEEEecCCCCcc-----c-cHhhhcCCCCcEEEccCCCCccccch----hhhhC
Q 045968           96 SNCGQGRLKLPVG-----MSVLGSSLELLDISCTGITE-----L-PEELKKLVNLKCLNLRWTGALIRIPR----QLISK  160 (402)
Q Consensus        96 ~~~~~~i~~l~~~-----~~~l~~~L~~L~L~~~~l~~-----l-p~~i~~l~~L~~L~l~~~~~~~~~~~----~~l~~  160 (402)
                      ..|  ++.+.+..     +.... +|+.+.+..|+|..     + -.++..+.+|+.||+.. |.++....    .+++.
T Consensus       165 grN--Rlengs~~~~a~~l~sh~-~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~  240 (388)
T COG5238         165 GRN--RLENGSKELSAALLESHE-NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCE  240 (388)
T ss_pred             ccc--hhccCcHHHHHHHHHhhc-CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcc
Confidence            666  55543321     22234 67777777776651     1 11244556777777777 44443221    12456


Q ss_pred             CCCCcEEEeeeeccc
Q 045968          161 FSRLRVLRMFAIGYD  175 (402)
Q Consensus       161 l~~L~~L~l~~~~~~  175 (402)
                      ++.|++|++.+|-..
T Consensus       241 W~~lrEL~lnDClls  255 (388)
T COG5238         241 WNLLRELRLNDCLLS  255 (388)
T ss_pred             cchhhhccccchhhc
Confidence            666777777777653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.28  E-value=0.0077  Score=31.93  Aligned_cols=17  Identities=41%  Similarity=0.716  Sum_probs=7.5

Q ss_pred             ccEEEecCCCCccccHh
Q 045968          116 LELLDISCTGITELPEE  132 (402)
Q Consensus       116 L~~L~L~~~~l~~lp~~  132 (402)
                      |++|++++|.++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.90  E-value=0.076  Score=42.24  Aligned_cols=102  Identities=18%  Similarity=0.268  Sum_probs=56.5

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLV  137 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~  137 (402)
                      ..+.+|+.+.+..  .+..++...|..+++|+.+.+.++   +..+ ...|..+. +|+.+.+.. .+..++.. +..++
T Consensus         9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~---~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN---LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST---TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             hCCCCCCEEEECC--CeeEeChhhccccccccccccccc---ccccceeeeeccc-ccccccccc-cccccccccccccc
Confidence            4566788777763  566677777888888888888664   5554 34466666 788888865 55555443 55678


Q ss_pred             CCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968          138 NLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA  171 (402)
Q Consensus       138 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  171 (402)
                      +|+.+++..  .+..++...+.++ +|+.+.+..
T Consensus        82 ~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence            888888865  3666666557776 888777654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=0.0037  Score=53.21  Aligned_cols=62  Identities=32%  Similarity=0.598  Sum_probs=31.4

Q ss_pred             ccccccEEecccccCcccC--cccc-cCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          258 VFRNLHRVTMVLCHKLKDV--TFLV-FAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l--~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                      .++.++.|.+.+|..+.+.  ..++ -.++|+.|+|++|+.+++-           ....+..+++|+.|.+.+.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----------GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----------GLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----------HHHHHHHhhhhHHHHhcCch
Confidence            3455555555555555543  2222 2455666666666655543           12344555555555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.62  E-value=0.023  Score=27.95  Aligned_cols=16  Identities=44%  Similarity=0.677  Sum_probs=6.8

Q ss_pred             cccEEEecCCCCcccc
Q 045968          115 SLELLDISCTGITELP  130 (402)
Q Consensus       115 ~L~~L~L~~~~l~~lp  130 (402)
                      +|+.|++++|++.++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5555666665555443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.98  E-value=0.041  Score=27.07  Aligned_cols=17  Identities=24%  Similarity=0.454  Sum_probs=9.5

Q ss_pred             CCccEEEecCCCCCCCCC
Q 045968          343 TRLKEMAVLGCDQLEKLP  360 (402)
Q Consensus       343 ~~L~~L~i~~c~~L~~lp  360 (402)
                      ++|+.|++++|. |+++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            467777887776 77765

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.019  Score=49.00  Aligned_cols=32  Identities=16%  Similarity=0.190  Sum_probs=17.3

Q ss_pred             eEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           67 TLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        67 ~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      .++-+++ .+...+-..+..++.++.|.+.+|.
T Consensus       105 aVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  105 AVDASDS-SIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             EEecCCc-hHHHHHHHHHhccchhhhheecccc
Confidence            3444433 4444444446666666666666663

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.30  E-value=0.047  Score=28.85  Aligned_cols=20  Identities=25%  Similarity=0.396  Sum_probs=12.0

Q ss_pred             CCCEEEccCCCccccccccccc
Q 045968           89 SLKVLKMSNCGQGRLKLPVGMS  110 (402)
Q Consensus        89 ~L~~L~l~~~~~~i~~l~~~~~  110 (402)
                      +|++|++++|  .++.+|..|+
T Consensus         1 ~L~~Ldls~n--~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN--NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS--EESEEGTTTT
T ss_pred             CccEEECCCC--cCEeCChhhc
Confidence            3566666666  5666655544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.28  E-value=0.32  Score=26.77  Aligned_cols=17  Identities=24%  Similarity=0.669  Sum_probs=13.3

Q ss_pred             CCCccEEEecCCCCCCC
Q 045968          342 FTRLKEMAVLGCDQLEK  358 (402)
Q Consensus       342 ~~~L~~L~i~~c~~L~~  358 (402)
                      ||+|+.|++++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            57888888888888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.92  E-value=0.023  Score=49.59  Aligned_cols=83  Identities=18%  Similarity=0.097  Sum_probs=49.8

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL  139 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L  139 (402)
                      ..+...+.|+++.| .+...... |+.+..|..|+++.+  .+..+|.+++.+. .+.++++..|.....|...+..+.+
T Consensus        39 ~~~kr~tvld~~s~-r~vn~~~n-~s~~t~~~rl~~skn--q~~~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSN-RLVNLGKN-FSILTRLVRLDLSKN--QIKFLPKDAKQQR-ETVNAASHKNNHSQQPKSQKKEPHP  113 (326)
T ss_pred             hccceeeeehhhhh-HHHhhccc-hHHHHHHHHHhccHh--hHhhChhhHHHHH-HHHHHHhhccchhhCCccccccCCc
Confidence            45566666666655 44344444 555555666666666  5666666666666 6666666666666666666666666


Q ss_pred             cEEEccCC
Q 045968          140 KCLNLRWT  147 (402)
Q Consensus       140 ~~L~l~~~  147 (402)
                      +.++..++
T Consensus       114 k~~e~k~~  121 (326)
T KOG0473|consen  114 KKNEQKKT  121 (326)
T ss_pred             chhhhccC
Confidence            66666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.66  E-value=0.042  Score=48.04  Aligned_cols=94  Identities=18%  Similarity=0.106  Sum_probs=78.4

Q ss_pred             cccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchh
Q 045968           77 EMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQ  156 (402)
Q Consensus        77 ~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~  156 (402)
                      ..+|-.-+..+...++|+++.+  .+..+-..|+.+. .|..|+++.|.+..+|...+....+..+++.. +..++.|.+
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~--r~vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s  106 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSN--RLVNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS  106 (326)
T ss_pred             cccchhhhhccceeeeehhhhh--HHHhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc
Confidence            3444333566778899999999  8888877888888 99999999999999999998888889999888 678889987


Q ss_pred             hhhCCCCCcEEEeeeeccc
Q 045968          157 LISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       157 ~l~~l~~L~~L~l~~~~~~  175 (402)
                       .+..+.+++++..++.+.
T Consensus       107 -~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  107 -QKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             -ccccCCcchhhhccCcch
Confidence             899999999998877654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.98  E-value=0.77  Score=25.07  Aligned_cols=18  Identities=33%  Similarity=0.532  Sum_probs=9.8

Q ss_pred             cccEEEecCCCCccccHh
Q 045968          115 SLELLDISCTGITELPEE  132 (402)
Q Consensus       115 ~L~~L~L~~~~l~~lp~~  132 (402)
                      +|++|++++|.+..+|..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            455555555555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.98  E-value=0.77  Score=25.07  Aligned_cols=18  Identities=33%  Similarity=0.532  Sum_probs=9.8

Q ss_pred             cccEEEecCCCCccccHh
Q 045968          115 SLELLDISCTGITELPEE  132 (402)
Q Consensus       115 ~L~~L~L~~~~l~~lp~~  132 (402)
                      +|++|++++|.+..+|..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            455555555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	402
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.8 bits (192), Expect = 9e-16
 Identities = 68/328 (20%), Positives = 119/328 (36%), Gaps = 67/328 (20%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
             R L L +N+I+T+++    + PHL  L L+ N  +  +  G F  + +L+ L + +  
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSN- 90

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEEL-KKLVNLKCLNLRWTGALIRIPRQL 157
             RLK +P+G+    S+L  LDIS   I  L + + + L NLK L +     L+ I  + 
Sbjct: 91  --RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRA 147

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS------LG 211
            S  + L  L +           P ++            L  L  L VL L       + 
Sbjct: 148 FSGLNSLEQLTL---EKCNLTSIPTEA------------LSHLHGLIVLRLRHLNINAIR 192

Query: 212 SYH-----ALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRV 265
            Y       L++L +S       +   CL G  L  L I +  +          R+L  +
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYL 250

Query: 266 TMVLCH--KLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENL 321
             +      +  +   +      L+ + L G      ++    F               L
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL--AVVEPYAFRGLN----------YL 298

Query: 322 QRLNLED-------------LPNLESIY 336
           + LN+               + NLE++ 
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 42/276 (15%)

Query: 41  ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
            N+R L L  N+++ +         +L  L +  N+ + ++ D  FQ + +LK L++ + 
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN 138

Query: 99  GQGRL-KLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQ 156
               L  +        +SLE L +    +T +P E L  L  L  L LR    +  I   
Sbjct: 139 ---DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDY 194

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYL--------EVLEL 208
               F RL  L++  I +  + +    + L+G         L L  L         V  L
Sbjct: 195 S---FKRLYRLKVLEISHWPYLDTMTPNCLYG---------LNLTSLSITHCNLTAVPYL 242

Query: 209 SLGSYHALQIL-LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVT 266
           ++     L+ L LS N + + I    L     L+E+++   ++     EP+ FR L+ + 
Sbjct: 243 AVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQL--AVVEPYAFRGLNYLR 299

Query: 267 MVLCH--KLKDVTFLVFA--PNLKSLDLDG----CD 294
           ++     +L  +   VF    NL++L LD     CD
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 32/159 (20%), Positives = 64/159 (40%), Gaps = 31/159 (19%)

Query: 38  KGWENVRRLSLMQNQIETV---------------------SEVPT-----CPHLLTLFLD 71
           +   N++ L +  N +  +                     + +PT        L+ L L 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 72  FNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPE 131
               +  I D  F+ +  LKVL++S+     L       + G +L  L I+   +T +P 
Sbjct: 185 HLN-INAIRDYSFKRLYRLKVLEISHWPY--LDTMTPNCLYGLNLTSLSITHCNLTAVPY 241

Query: 132 E-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRM 169
             ++ LV L+ LNL +   +  I   ++ +  RL+ +++
Sbjct: 242 LAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQL 279

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 46/300 (15%), Positives = 92/300 (30%), Gaps = 66/300 (22%)

Query: 97  NCGQGRL-KLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIP 154
            C + R   +P G+    +   LLD+    I  L ++      +L+ L L     +  + 
Sbjct: 17  LCHRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVE 72

Query: 155 RQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS----- 209
               +    LR L +     +R    P                 GL  L  L++S     
Sbjct: 73  PGAFNNLFNLRTLGL---RSNRLKLIPLGV------------FTGLSNLTKLDISENKIV 117

Query: 210 ------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE-LEELKIDYTEIVRKRREPFVFRN 261
                     + L+ L +  N L   I      G   LE+L ++   +           +
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSH 174

Query: 262 LHR-VTMVLCH-KLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISP 317
           LH  + + L H  +  +    F     LK L++     + + ++                
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGL--------- 224

Query: 318 FENLQRLNLED-------------LPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSN 364
             NL  L++               L  L  +     P + ++   +    +L+++ +   
Sbjct: 225 --NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 60/349 (17%), Positives = 117/349 (33%), Gaps = 59/349 (16%)

Query: 42  NVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           N+  L+L  NQ+  +  +       L +L + FN  +  +     Q +P LKVL + +  
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN- 83

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQL 157
              L  L        ++L  L +    I ++      K  NL  L+L   G L       
Sbjct: 84  --ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGT 140

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-------- 209
             +   L+ L +     ++      + +          ++     L+ LELS        
Sbjct: 141 QVQLENLQELLL---SNNKIQALKSEEL----------DIFANSSLKKLELSSNQIKEFS 187

Query: 210 ---LGSYHALQIL-LSSNKLKSCI---RSLCLDGFELEELKIDYTEIVRKRREPFVFRNL 262
                +   L  L L++ +L   +     L L    +  L +  +++         F  L
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT--SNTTFLGL 245

Query: 263 HRVTMV---LCH-KLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHIS 316
               +    L +  L  V    FA  P L+   L+  + ++ + S             + 
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFS-----------HSLH 293

Query: 317 PFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNS 365
              N++ LNL+   +            ++ + +      LE L ++ N 
Sbjct: 294 GLFNVRYLNLKR--SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 45/280 (16%)

Query: 42  NVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           +  + S+    +  + +        L  L ++ N  +  I    F  + +LK L +SN  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSF 364

Query: 100 QGRLKLPVG--MSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQ 156
                L     +S+  S L +L+++   I+++  +    L +L+ L+L        +  Q
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS------- 209
                  +  + +    Y+++ +   +S               +  L+ L L        
Sbjct: 425 EWRGLENIFEIYL---SYNKYLQLTRNS------------FALVPSLQRLMLRRVALKNV 469

Query: 210 ------LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVR------KRREP 256
                       L IL LS+N + +    +     +LE L + +  + R           
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 257 FVFRNLHRVTMV-LCH-KLKDVTFLVFA--PNLKSLDLDG 292
           +  + L  + ++ L      ++   VF     LK +DL  
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 47/271 (17%), Positives = 91/271 (33%), Gaps = 42/271 (15%)

Query: 44  RRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
             L+L +N+I  +         HL  L L  N+  + +    ++ + ++  + +S     
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN--- 440

Query: 102 RLKLPVGMSVLG-SSLELLDIS---CTGITELPEELKKLVNLKCLNLRWTGALIRIPRQL 157
           +       S     SL+ L +       +   P   + L NL  L+L     +  I   +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDM 499

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQ 217
           +    +L +L +    ++      + +         I  L GL +L +L           
Sbjct: 500 LEGLEKLEILDL---QHNNLARLWKHA----NPGGPIYFLKGLSHLHIL----------- 541

Query: 218 ILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMV-LCH-KLKD 275
             L SN        +  D FEL+ + +    +        VF N   +  + L    +  
Sbjct: 542 -NLESNGFDEIPVEVFKDLFELKIIDLGLNNL--NTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 276 V---TFLVFAPNLKSLDLDG------CDAME 297
           V    F     NL  LD+        C+++ 
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 43/279 (15%), Positives = 91/279 (32%), Gaps = 51/279 (18%)

Query: 89  SLKVLKMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRW 146
           S +V   S+     L  +P     L +++ +L+++   +  L      +   L  L++ +
Sbjct: 5   SHEVADCSHLK---LTQVPDD---LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 147 TGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVL 206
              + ++  +L  K   L+VL +    ++   +  + +                  L  L
Sbjct: 59  N-TISKLEPELCQKLPMLKVLNL---QHNELSQLSDKT------------FAFCTNLTEL 102

Query: 207 ELS-----------LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRR 254
            L                  L  L LS N L S      +    L+EL +   +I   + 
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 255 EPFVFRNLHRVTMV-LCH-KLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPE 310
           E         +  + L   ++K+ +   F     L  L L+       +          E
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL---------TE 213

Query: 311 MMGHISPFENLQRLNLED--LPNLESIYWKPLPFTRLKE 347
            +       +++ L+L +  L    +  +  L +T L  
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 17/121 (14%)

Query: 38  KGWENVRRLSLMQNQIETVSEVPT----------CPHLLTLFLDFNQELEMIADGFFQLM 87
           +G E +  L L  N +  + +               HL  L L+ N   + I    F+ +
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDL 559

Query: 88  PSLKVLKMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEEL--KKLVNLKCLNL 144
             LK++ +       L  LP  +     SL+ L++    IT + +++      NL  L++
Sbjct: 560 FELKIIDLGLN---NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 145 R 145
           R
Sbjct: 617 R 617

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 34/207 (16%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
            +  L  + N++  +    T   L  L LD+NQ +E I + F      ++ L  S+    
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN--- 629

Query: 102 RLK-LPVGMSVLG-SSLELLDISCTGITELPEEL------KKLVNLKCLNLRWTGALIRI 153
           +LK +P   +      +  +D S   I      +       K +N   + L +   + + 
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF 688

Query: 154 PRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS---- 209
           P +L +  S +  + +     +     PE+S      +           L  ++L     
Sbjct: 689 PTELFATGSPISTIIL---SNNLMTSIPENS-----LKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 210 --------LGSYHALQIL-LSSNKLKS 227
                     +   L  + +S N   S
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSS 767

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 49/354 (13%), Positives = 108/354 (30%), Gaps = 72/354 (20%)

Query: 45  RLSLMQNQIETV-SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL 103
           ++  + N+I  +   +     L  ++   +               +    K         
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYE------ 481

Query: 104 KLPVGMSVLGSSLELLDIS-CTGITELPEELKKLVNLKCLNLRW-----TGALIRIPRQL 157
              +  S L   L  +++  C  +T+LP+ L  L  L+ LN+          L     +L
Sbjct: 482 NEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-------- 209
                    +++F +GY+   E P  + L             +  L +L+          
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQ-----------KMVKLGLLDCVHNKVRHLE 589

Query: 210 -LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDY---TEIVRKRREPFVFRNLHR 264
             G+   L  L L  N+++      C    ++E L   +     I       F  ++++ 
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI----PNIFNAKSVYV 645

Query: 265 VTMV-LCH-KLKDVTFLVFAP-------NLKSLDLDGCDAMEEIISVGKFAETPEMMGHI 315
           +  V   + K+      +          N  ++ L     +++           E+    
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFP--------TELFATG 696

Query: 316 SPFENLQRLNL-----EDLPNLESIYWKPLPFTRLKEMAVL--GCDQLEKLPVD 362
           S    +  + L       +P   S+  K   +     +  +    ++L  L  D
Sbjct: 697 S---PISTIILSNNLMTSIPE-NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 39/330 (11%), Positives = 86/330 (26%), Gaps = 73/330 (22%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLD--FNQELEMIADGFFQLMPSLKVLKMSNCG 99
            ++ LS   +       +     L     +   ++        F      L +  +    
Sbjct: 348 ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 100 QGRLKLPVGMSVL-GSSLELLDISCT--GITELPEELKKLVNLKCLNLRWTGALIRIPRQ 156
             R      +      SL+   I      IT + + +++L  L+ +              
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA-NSPFTYDNIA 466

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS------- 209
           +  + +     + +                             LK L  +EL        
Sbjct: 467 VDWEDANSDYAKQYEN--------------------EELSWSNLKDLTDVELYNCPNMTQ 506

Query: 210 ----LGSYHALQIL-LSSNKLKS---------CIRSLCLDGFELEELKIDY---TEIVRK 252
               L     LQ L ++ N+  S          +      G +++   + Y    E    
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP-- 564

Query: 253 RREPFVFRNLHR-VTMVLCH-KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPE 310
                  + + +   +   H K++ +        L  L LD            +  E PE
Sbjct: 565 --ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN----------QIEEIPE 612

Query: 311 MMGHISPFENLQRLNL-----EDLPNLESI 335
                +    ++ L       + +PN+ + 
Sbjct: 613 DFCAFTD--QVEGLGFSHNKLKYIPNIFNA 640

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 30/201 (14%)

Query: 21  RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQ---- 74
            N +   G  +  + D     N   ++L  N+I+        T   + T+ L  N     
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 75  --ELEMIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLG-SSLELLDISCTGITELP 130
                   DG ++    L  + +      +L  L           L  +D+S    +  P
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFN---KLTSLSDDFRATTLPYLSNMDVSYNCFSSFP 769

Query: 131 EELKKLVNLKCLNLRWTGALI--RIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFG 188
            +      LK   +R        RI RQ  +  +    L    IG +   +  E      
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---- 825

Query: 189 GGEVLIQELLGLKYLEVLELS 209
                         L +L+++
Sbjct: 826 -----------TPQLYILDIA 835

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 8e-15
 Identities = 52/280 (18%), Positives = 95/280 (33%), Gaps = 40/280 (14%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
           +K   DV      + LS+++ Q++    +   P L +L L  N+            +PSL
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFK---KVALPSL 352

Query: 91  KVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGAL 150
             L +S              +  +SL  LD+S  G   +      L  L+ L+ + +  L
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-L 411

Query: 151 IRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS- 209
            R+     S F  L  L    I Y       +               LGL  L  L+++ 
Sbjct: 412 KRVTE--FSAFLSLEKLLYLDISYTNTKIDFDGI------------FLGLTSLNTLKMAG 457

Query: 210 -----------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE-LEELKIDYTEIVRKRREP 256
                        +   L  L LS  +L+  I     D    L+ L + +  +     + 
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNL--LFLDS 514

Query: 257 FVFRNLHRVTMVLCH--KLKDV--TFLVFAPNLKSLDLDG 292
             +  L+ ++ + C   +++        F  +L   +L  
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 45/320 (14%), Positives = 100/320 (31%), Gaps = 44/320 (13%)

Query: 42  NVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           ++  L  ++ ++ ++   P      L  L +  N         +F  + +L  + +S   
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN- 163

Query: 100 QGRLK-LP----VGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIP 154
              ++ +       +         LD+S   I  + ++  + + L  L LR       I 
Sbjct: 164 --YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 155 RQLISKFSRLRVLRMFAIGYDRFHEAPE-DSVLFGGGEVLIQELLGLKYLEVLELSLGSY 213
           +  +   + L V R+    +         +  +  G   +  +   L Y       +  +
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 214 HALQIL----LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVL 269
           H L  +    L+   +K  +  +    F+ + L I   ++  K+        L   ++ L
Sbjct: 282 HCLANVSAMSLAGVSIKY-LEDVPKH-FKWQSLSIIRCQL--KQFPTLDLPFLK--SLTL 335

Query: 270 CH-KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNL-- 326
              K       V  P+L  LDL               + +           +L+ L+L  
Sbjct: 336 TMNKGSISFKKVALPSLSYLDLSRN----------ALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 327 ----------EDLPNLESIY 336
                       L  L+ + 
Sbjct: 386 NGAIIMSANFMGLEELQHLD 405

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 59/337 (17%), Positives = 110/337 (32%), Gaps = 39/337 (11%)

Query: 41  ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
            + + + L  N ++ +          L  L L   + +E I D  +  +  L  L ++  
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN 90

Query: 99  GQGRLK-LPVGM-SVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPR 155
               ++    G  S L +SLE L    T +  L    + +L+ LK LN+     +     
Sbjct: 91  ---PIQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKL 145

Query: 156 -QLISKFSRLRVLRMFAIGYDRFHEAPED--SVLFGGGEVLIQELLGLKYLEVLELSLGS 212
               S  + L  + +    Y+       +    L    +V +   + L  ++ ++     
Sbjct: 146 PAYFSNLTNLVHVDL---SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 213 YHALQIL-LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRR----EPFVFRNLHRVT 266
              L  L L  N   S I   CL     L   ++   E   +R     EP +   L  VT
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 267 MVLCH----KLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFEN 320
           +               + F    N+ ++ L G      I  +    +  +          
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV----SIKYLEDVPKHFKWQSLSIIRCQ 318

Query: 321 LQRLNLEDLPNLESIY------WKPLPFTRLKEMAVL 351
           L++    DLP L+S+               L  ++ L
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYL 355

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 55/288 (19%)

Query: 112 LGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMF 170
           + SS + +D+S   +  L          L+ L+L     +  I  +       L  L   
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLI-- 86

Query: 171 AIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-----------LGSYHALQIL 219
            +  +        S              GL  LE L              +G    L+ L
Sbjct: 87  -LTGNPIQSFSPGS------------FSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 220 -LSSNKLKSCIRSLCLDGF-ELEELKIDY---TEIVRKRREPFVFRNLHRVTMVLCH--- 271
            ++ N + SC           L  + + Y     I          + L     V      
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-----TVNDLQFLRENPQVNLSLDM 188

Query: 272 ---KLKDVTFLVFA-PNLKSLDLDGCDAMEEIISVGKFA-----ETPEMMGHISPFENLQ 322
               +  +    F    L  L L G      I+               ++G      NL+
Sbjct: 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 323 RLNLEDLPNLESIYWKPL-----PFTRLKEMAVLGCDQLEKLPVDSNS 365
                 +  L  +                 +       +  + +   S
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.8 bits (182), Expect = 8e-15
 Identities = 69/327 (21%), Positives = 109/327 (33%), Gaps = 74/327 (22%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQL-MPSLKVLKMSNCGQ 100
             +R           +      +   +     + L+  AD       P    L++ +   
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-- 91

Query: 101 GRLK-LPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS 159
             L   P     L S L+ + I   G+ ELP+ +++   L+ L L     L  +P   I+
Sbjct: 92  -PLPQFPDQAFRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IA 147

Query: 160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQIL 219
             +RLR L +         E PE             E  GL  L+ L L           
Sbjct: 148 SLNRLRELSIR--ACPELTELPEP----LASTDASGEHQGLVNLQSLRLE---------- 191

Query: 220 LSSNKLKS---CIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV 276
                ++S    I +L      L+ LKI  + +           +L              
Sbjct: 192 --WTGIRSLPASIANLQ----NLKSLKIRNSPL---SALGPAIHHLP------------- 229

Query: 277 TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIY 336
                   L+ LDL GC A+            P + G  +    L+RL L+D  NL ++ 
Sbjct: 230 -------KLEELDLRGCTALRNY---------PPIFGGRA---PLKRLILKDCSNLLTL- 269

Query: 337 WKPLPFTRLKEMAVL---GCDQLEKLP 360
             PL   RL ++  L   GC  L +LP
Sbjct: 270 --PLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETV-SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPS 89
              + + +G  N++ L L    I ++ + +    +L +L +  +  L  +      L P 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHL-PK 230

Query: 90  LKVLKMSNCGQGRLKLPVGMSVLGSSLELLDIS-CTGITELPEELKKLVNLKCLNLRWTG 148
           L+ L +  C   R   P       + L+ L +  C+ +  LP ++ +L  L+ L+LR   
Sbjct: 231 LEELDLRGCTALR-NYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 149 ALIRIPRQLISKFSRLRVLRM 169
            L R+P  LI++     ++ +
Sbjct: 289 NLSRLP-SLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 35/265 (13%), Positives = 63/265 (23%), Gaps = 72/265 (27%)

Query: 114 SSLELLDIS-CTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172
           S  E L     T +    + L +       +                + +     ++   
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW--------HSAWRQANSNNPQIETR 63

Query: 173 GYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS----------LGSYHALQIL-LS 221
                    +             E         LEL                 LQ + + 
Sbjct: 64  TGRALKATADLL-----------EDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTID 112

Query: 222 SNKLKS---CIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTF 278
           +  L      ++        LE L +    +   R  P    +L+               
Sbjct: 113 AAGLMELPDTMQQFA----GLETLTLARNPL---RALPASIASLN--------------- 150

Query: 279 LVFAPNLKSLDLDGCDAMEEI-ISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYW 337
                 L+ L +  C  + E+   +     + E         NLQ L LE    + S+  
Sbjct: 151 -----RLRELSIRACPELTELPEPLASTDASGE----HQGLVNLQSLRLEW-TGIRSL-- 198

Query: 338 KPLPFTRLKEMAVLGCD--QLEKLP 360
            P     L+ +  L      L  L 
Sbjct: 199 -PASIANLQNLKSLKIRNSPLSALG 222

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 57/354 (16%), Positives = 111/354 (31%), Gaps = 52/354 (14%)

Query: 38  KGWENVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95
               ++  L L  N + ++S         L  L L  N    +     F  + +L+ L++
Sbjct: 71  YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 96  SNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIP 154
            N         +  + L +SL  L+I    +     + LK + ++  L L  +     + 
Sbjct: 131 GNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLL 188

Query: 155 RQLISKFSRLRVLRMFAIGYDRFHEAPED-------------------SVLFGGGEVLIQ 195
                  S +R L +      RF  +P                        F     L++
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248

Query: 196 ELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE 255
            +L L  +E  + +L          + ++         ++   +  L I    +      
Sbjct: 249 YILELSEVEFDDCTLNGL----GDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FYDL 302

Query: 256 PFVFRNLHRVTMV-LCH-KLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPEM 311
             V+  L +V  + + + K+  V         +L+ LDL     +EE +           
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA--- 359

Query: 312 MGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNS 365
                 + +LQ L L    +L S+         LK         L  L +  N+
Sbjct: 360 ------WPSLQTLVLSQN-HLRSMQKTGEILLTLK--------NLTSLDISRNT 398

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 51/331 (15%), Positives = 96/331 (29%), Gaps = 65/331 (19%)

Query: 41  ENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
             ++ L L  N+I  +    +  C +L  L L  ++ +  I    F  + SL+ L +S+ 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN 84

Query: 99  GQGRLK-LPVGMSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPR 155
               L  L        SSL+ L++       L        L NL+ L +        I R
Sbjct: 85  ---HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 156 QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA 215
              +  + L  L    I           S            L  ++ +  L L L     
Sbjct: 142 IDFAGLTSLNELE---IKALSLRNYQSQS------------LKSIRDIHHLTLHL----- 181

Query: 216 LQILLSSNKLKSCIRSLCLDGFE-LEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK 274
                  ++  + +  +  D    +  L++  T + R +  P     +      L  +  
Sbjct: 182 -------SES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 275 DVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES 334
            +T   F   LK L                                L  +  +D      
Sbjct: 234 VLTDESFNELLKLLRY---------------------------ILELSEVEFDDCTLNGL 266

Query: 335 IYWKPLPFTRLKEMAVLGCDQLEKLPVDSNS 365
             + P     + E+  +    + +L +    
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 37/259 (14%), Positives = 75/259 (28%), Gaps = 71/259 (27%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
            +RRL + Q  +             +  + ++ ++ + ++   F Q + SL+ L +S   
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENL 345

Query: 100 QGRLKLPVGMSVLG-SSLELLDISCTGITELPEE---LKKLVNLKCLNLRWTGALIRIPR 155
                L          SL+ L +S   +  + +    L  L NL  L++           
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-------- 397

Query: 156 QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA 215
                                FH  P+                  + +  L LS      
Sbjct: 398 --------------------TFHPMPDS-------------CQWPEKMRFLNLS------ 418

Query: 216 LQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMV-LCH-KL 273
                 S  ++  +++       LE L +    +            L R+  + +   KL
Sbjct: 419 ------STGIRV-VKTCIPQT--LEVLDVSNNNLDS------FSLFLPRLQELYISRNKL 463

Query: 274 KDVTFLVFAPNLKSLDLDG 292
           K +      P L  + +  
Sbjct: 464 KTLPDASLFPVLLVMKISR 482

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 31/154 (20%)

Query: 39  GWENVRRLSLMQNQIETVSEVP----TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK 94
            W +++ L L QN + ++ +      T  +L +L +  N     + D        ++ L 
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWP-EKMRFLN 416

Query: 95  MSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLV----------------- 137
           +S+       + V  + +  +LE+LD+S   +      L +L                  
Sbjct: 417 LSST-----GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL 471

Query: 138 --NLKCLNLRWTGALIRIPRQLISKFSRLRVLRM 169
              L  + +     L  +P  +  + + L+ + +
Sbjct: 472 FPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97
             ++ L + +N+++T+ +    P LL + +  NQ L+ + DG F  + SL+ + +  
Sbjct: 451 PRLQELYISRNKLKTLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHT 506

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 52/334 (15%), Positives = 111/334 (33%), Gaps = 76/334 (22%)

Query: 30  GLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPS 89
            +     ++   N+  L+L  NQI  +S +     L  L++  N+ +  I+    Q + +
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK-ITDIS--ALQNLTN 111

Query: 90  LKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGA 149
           L+ L ++      +     ++ L + +  L++           L  +  L  L +  +  
Sbjct: 112 LRELYLNED---NISDISPLANL-TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-- 165

Query: 150 LIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS 209
             ++  + ++  + L  L   ++ Y++  +              I  L  L  L      
Sbjct: 166 --KV--KDVTPIANLTDLYSLSLNYNQIED--------------ISPLASLTSLHYFTAY 207

Query: 210 ---------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKRRE 255
                    + +   L  L + +NK+        L        L  L+I   +I     +
Sbjct: 208 VNQITDITPVANMTRLNSLKIGNNKITD------LSPLANLSQLTWLEIGTNQI----SD 257

Query: 256 PFVFRNLHRVTMVLCH--KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMG 313
               ++L ++ M+     ++ D++ L     L SL L+      E + V           
Sbjct: 258 INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEV----------- 306

Query: 314 HISPFENLQRLNLED-----------LPNLESIY 336
            I    NL  L L             L  ++S  
Sbjct: 307 -IGGLTNLTTLFLSQNHITDIRPLASLSKMDSAD 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 48/330 (14%), Positives = 101/330 (30%), Gaps = 92/330 (27%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100
               R  L +  +  V        +  L +   + +  I     + + +L+ L ++    
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAGEK-VASIQG--IEYLTNLEYLNLNGN-- 76

Query: 101 GRLKLPVGMSVLG--SSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQL- 157
            ++     +S L     L  L I    IT++   L+ L NL+ L L            + 
Sbjct: 77  -QIT---DISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED--------NIS 123

Query: 158 -ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS------- 209
            IS  + L  +    +G +                  +  L  +  L  L ++       
Sbjct: 124 DISPLANLTKMYSLNLGANHNLS-------------DLSPLSNMTGLNYLTVTESKVKDV 170

Query: 210 --LGSYHALQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKRREPFVFRNL 262
             + +   L  L L+ N+++       +        L        +I     +     N+
Sbjct: 171 TPIANLTDLYSLSLNYNQIED------ISPLASLTSLHYFTAYVNQI----TDITPVANM 220

Query: 263 HRVTMVLCH--KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFEN 320
            R+  +     K+ D++ L     L  L++       +I               I+  ++
Sbjct: 221 TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN----QISD-------------INAVKD 263

Query: 321 LQRL--------------NLEDLPNLESIY 336
           L +L               L +L  L S++
Sbjct: 264 LTKLKMLNVGSNQISDISVLNNLSQLNSLF 293

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 59/351 (16%), Positives = 119/351 (33%), Gaps = 90/351 (25%)

Query: 46  LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL 105
           L+ +   I  +         +   L      +++     + + S+  L ++      ++ 
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVASIQ- 60

Query: 106 PVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLR 165
             G+  L ++LE L+++   IT++   L  LV L  L +      I      IS    L 
Sbjct: 61  --GIEYL-TNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTN--KITD----ISALQNLT 110

Query: 166 VLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS----------LGSYHA 215
            LR   +  D   +              I  L  L  +  L L           L +   
Sbjct: 111 NLRELYLNEDNISD--------------ISPLANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 216 LQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKRREPFVFRNLHRVTMVLC 270
           L  L ++ +K+K       +        L  L ++Y +I     +     +L  +     
Sbjct: 157 LNYLTVTESKVKD------VTPIANLTDLYSLSLNYNQI----EDISPLASLTSLHYFTA 206

Query: 271 H--KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRL---- 324
           +  ++ D+T +     L SL +       +I               +SP  NL +L    
Sbjct: 207 YVNQITDITPVANMTRLNSLKIGNN----KITD-------------LSPLANLSQLTWLE 249

Query: 325 ----------NLEDLPNLESIYWKPLPFTRLKEMAVLG-CDQLEKLPVDSN 364
                      ++DL  L+ +    +   ++ +++VL    QL  L +++N
Sbjct: 250 IGTNQISDINAVKDLTKLKMLN---VGSNQISDISVLNNLSQLNSLFLNNN 297

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 61/347 (17%), Positives = 118/347 (34%), Gaps = 51/347 (14%)

Query: 38  KGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQ-ELEMIADGFFQLMPSLKVLK 94
           +   N+R L L  ++I  +         HL  L L F      ++ DG+F+ + +L  L 
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 95  MSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKL--VNLKCLNLRWTGALI 151
           +S      L L      L +SL+ +D S   I  + E  L+ L    L   +L       
Sbjct: 130 LSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 152 RIPRQLISKFSRLR--VLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS 209
           R+        +  R  VL +  +  + +      +      +     L+   ++      
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 210 LGSYH-------------ALQIL-LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRR 254
             +               +++ L LS   + S + S   +   +L+ L + Y +I   + 
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKI--NKI 305

Query: 255 EPFVFRNLHRVTMV-LCH-KLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPE 310
               F  L  + ++ L +  L ++    F   P +  +DL        I  +        
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN----HIAII-------- 353

Query: 311 MMGHISPFENLQRLNLED--------LPNLESIYWKPLPFTRLKEMA 349
                   E LQ L+L D        +P++  I+        L ++ 
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 61/280 (21%), Positives = 111/280 (39%), Gaps = 40/280 (14%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           +VR L L    + +++     T   L  L L +N+ +  IAD  F  + +L+VL +S   
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYN- 324

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIP--- 154
              L  L          +  +D+    I  + ++  K L  L+ L+LR   AL  I    
Sbjct: 325 --LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFIP 381

Query: 155 --RQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS--- 209
               +    ++L  L    +  +  H +  ++ L     +    LL + +L++L L+   
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLS--ENRLENLDILYF--LLRVPHLQILILNQNR 437

Query: 210 ---------LGSYHALQIL-LSSNKLKSC-IRSLCLDGFE----LEELKIDYTEIVRKRR 254
                         +L+ L L  N L+      LC D FE    L+ L +++  +     
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL--NSL 495

Query: 255 EPFVFRNLHRVTMV-LCH-KLKDVTFLVFAPNLKSLDLDG 292
            P VF +L  +  + L   +L  ++      NL+ LD+  
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 56/350 (16%), Positives = 105/350 (30%), Gaps = 51/350 (14%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
              RL L  N I TV+    P    L  L L        I    F+ +P+L++L + +  
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITEL---PEELKKLVNLKCLNLRWTGALIRIPR 155
             ++  L          L  L +   G+++        + L  L  L+L     +  +  
Sbjct: 84  --KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYL 140

Query: 156 QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA 215
                F +L  L+      ++     E             +   L +  +   SL S  +
Sbjct: 141 HPS--FGKLNSLKSIDFSSNQIFLVCEHE--LEP-----LQGKTLSFFSLAANSLYSRVS 191

Query: 216 LQILLSSNKLKS-CIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLC--HK 272
           +      N  ++  +  L + G                + + F     H +       H 
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 273 LKDVTFLVFAP----NLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED 328
           +KD     FA     +++ LDL        + S+                ++L+ LNL  
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHG----FVFSLNSRV--------FETLKDLKVLNLAY 299

Query: 329 -------------LPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNS 365
                        L NL+ +         L      G  ++  + +  N 
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 55/388 (14%), Positives = 115/388 (29%), Gaps = 87/388 (22%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSE----VPTCPHLLTLFLDFNQELEMIADGFFQL 86
           L   P      +++ +    NQI  V E          L    L  N     ++  + + 
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 87  MPSLK---------------VLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPE 131
           M   +               V    N      K      +L   +         I +  +
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 132 EL---KKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFG 188
                    +++ L+L   G +  +  ++      L+VL    + Y++ ++  +++    
Sbjct: 258 NTFAGLARSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLN---LAYNKINKIADEA---- 309

Query: 189 GGEVLIQELLGLKYLEVLELS-----------LGSYHALQIL-LSSNKLKSCIRSLCLDG 236
                     GL  L+VL LS                 +  + L  N +   I+      
Sbjct: 310 --------FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKF 360

Query: 237 F-ELEELKIDYTEIVRKRREPFV---------FRNLHRVTMVL---------CHKLKDVT 277
             +L+ L +    +      P +            L ++ +              L  + 
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 278 FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYW 337
           FL+  P+L+ L L+              +E P          +L++L L +   L+  + 
Sbjct: 421 FLLRVPHLQILILNQNR-FSSCSGDQTPSENP----------SLEQLFLGEN-MLQLAWE 468

Query: 338 KPLPFTRLKEMAVLGCDQLEKLPVDSNS 365
             L +   +     G   L+ L ++ N 
Sbjct: 469 TELCWDVFE-----GLSHLQVLYLNHNY 491

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 30  GLKEAPDVKGWENVRRLSLMQNQIETVSEVPTC---PHLLTLFLDFNQ----ELEMIADG 82
            L     +    +++ L L QN+  + S   T    P L  LFL  N         +   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 83  FFQLMPSLKVLKMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKC 141
            F+ +  L+VL +++     L  LP G+    ++L  L ++   +T L        NL+ 
Sbjct: 475 VFEGLSHLQVLYLNHN---YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEI 530

Query: 142 LNLR 145
           L++ 
Sbjct: 531 LDIS 534

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 37/262 (14%), Positives = 75/262 (28%), Gaps = 43/262 (16%)

Query: 114 SSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172
           ++ E L +S   I  +       L  L+ L L      + I ++       LR+L +   
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL--- 80

Query: 173 GYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-------------LGSYHALQIL 219
           G  + +    D+              GL +L  L L                +  AL  L
Sbjct: 81  GSSKIYFLHPDA------------FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 220 -LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPF-VFRNLHRVTMVLCH-KLKD 275
            LS N+++S            L+ +     +I           +        L    L  
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 276 VTFLVFA--------PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLE 327
              + +           L+ LD+ G     +I      A +      +    ++      
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 328 D--LPNLESIYWKPLPFTRLKE 347
              + + +   +  L  + ++ 
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRH 270

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 60/267 (22%), Positives = 91/267 (34%), Gaps = 49/267 (18%)

Query: 41  ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
            N R L+LM+N I+ +         HL  L L  N  +  I  G F  + SL  L++ + 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133

Query: 99  GQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQ 156
               L  +P G     S L  L +    I  +P     ++ +L  L+L     L  I   
Sbjct: 134 ---WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHAL 216
               F  L  L+   +G     +              +  L  L  LE LE         
Sbjct: 191 A---FEGLFNLKYLNLGMCNIKD--------------MPNLTPLVGLEELE--------- 224

Query: 217 QILLSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTMV-LCH-KL 273
              +S N     IR     G   L++L +  +++     E   F  L  +  + L H  L
Sbjct: 225 ---MSGNHFPE-IRPGSFHGLSSLKKLWVMNSQV--SLIERNAFDGLASLVELNLAHNNL 278

Query: 274 KDVTFLVFA--PNLKSLDLDG----CD 294
             +   +F     L  L L      CD
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWNCD 305

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 38  KGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95
           +    +R L L  N IE++        P L+ L L   ++LE I++G F+ + +LK L +
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203

Query: 96  SNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRI 153
             C    +K +P    +    LE L++S     E+       L +LK L +  +  +  I
Sbjct: 204 GMC---NIKDMPNLTPL--VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLI 257

Query: 154 PRQLISKFSRLRVLRM 169
            R      + L  L +
Sbjct: 258 ERNAFDGLASLVELNL 273

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMP 88
           +K+ P++     +  L +  N    +          L  L++  +Q + +I    F  + 
Sbjct: 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLA 266

Query: 89  SLKVLKMSNCGQGRLK-LPVGMSVLGSSLELLDIS 122
           SL  L +++     L  LP  +      L  L + 
Sbjct: 267 SLVELNLAHN---NLSSLPHDLFTPLRYLVELHLH 298

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 67/346 (19%), Positives = 115/346 (33%), Gaps = 62/346 (17%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
            V  L+L   QIE +          +  L++ FN  +  +    FQ +P L VL +    
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN- 127

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQL 157
              L  LP G+      L  L +S   +  + ++  +   +L+ L L     L  +    
Sbjct: 128 --DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--- 181

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL------IQEL--LGLKYLEVLELS 209
           +S    L       + Y+          +    E L      I  +       L +L+L 
Sbjct: 182 LSLIPSLFHAN---VSYNLLSTLAIPIAV----EELDASHNSINVVRGPVNVELTILKLQ 234

Query: 210 ---------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE-LEELKIDYTEIVRKRREPFV 258
                    L +Y  L  + LS N+L+  I        + LE L I    +         
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL---VALNLY 290

Query: 259 FRNLHRVTMV-LCH-KLKDVTFLVFA-PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI 315
            + +  + ++ L H  L  V         L++L LD       I+++            +
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN----SIVTL-----------KL 335

Query: 316 SPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPV 361
           S    L+ L L      +    + L F  +   AV   DQ  K+  
Sbjct: 336 STHHTLKNLTLSHND-WDCNSLRAL-FRNVARPAVDDADQHCKIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 11/134 (8%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMP 88
           L +   +  +  +  + L  N++E +          L  L++  N+ L  + + + Q +P
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL-NLYGQPIP 295

Query: 89  SLKVLKMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRW 146
           +LKVL +S+     L  +          LE L +    I  L       L NL   +  W
Sbjct: 296 TLKVLDLSHN---HLLHVERNQPQF-DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 351

Query: 147 TG-ALIRIPRQLIS 159
              +L  + R +  
Sbjct: 352 DCNSLRALFRNVAR 365

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 38/276 (13%), Positives = 80/276 (28%), Gaps = 63/276 (22%)

Query: 114 SSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172
           ++ +++    + + +LP   L     ++ LNL     +  I     +    ++ L M   
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYM--- 100

Query: 173 GYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-----------LGSYHALQIL-L 220
           G++     P                  +  L VL L              +   L  L +
Sbjct: 101 GFNAIRYLPPHV------------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148

Query: 221 SSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFL 279
           S+N L+  I          L+ L++    +     +  +  +L    +        ++ L
Sbjct: 149 SNNNLER-IEDDTFQATTSLQNLQLSSNRL--THVDLSLIPSLFHANVSYNL----LSTL 201

Query: 280 VFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNL-----------ED 328
                ++ LD         I  V                  L  L L            +
Sbjct: 202 AIPIAVEELDASHN----SINVVRGPV-----------NVELTILKLQHNNLTDTAWLLN 246

Query: 329 LPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSN 364
            P L  +        ++     +   +LE+L + +N
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 61/267 (22%), Positives = 98/267 (36%), Gaps = 49/267 (18%)

Query: 41  ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
            N R L+L +NQI+ +         HL  L L  N  +  I  G F  + +L  L++ + 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122

Query: 99  GQGRLK-LPVGMSVLGSSLELLDISCTGITELPEEL-KKLVNLKCLNLRWTGALIRIPRQ 156
              RL  +P G  V  S L+ L +    I  +P     ++ +L+ L+L     L  I   
Sbjct: 123 ---RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHAL 216
                S LR L +         E              I  L  L  L+ L+         
Sbjct: 180 AFEGLSNLRYLNL---AMCNLRE--------------IPNLTPLIKLDELD--------- 213

Query: 217 QILLSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCH--KL 273
              LS N L + IR     G   L++L +  ++I  +  E   F NL  +  +      L
Sbjct: 214 ---LSGNHLSA-IRPGSFQGLMHLQKLWMIQSQI--QVIERNAFDNLQSLVEINLAHNNL 267

Query: 274 KDVTFLVFA--PNLKSLDLDG----CD 294
             +   +F    +L+ + L      C+
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPWNCN 294

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMP 88
           L+E P++     +  L L  N +  +         HL  L++  +Q +++I    F  + 
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQ 255

Query: 89  SLKVLKMSNCGQGRLK-LPVGMSVLGSSLELLDIS 122
           SL  + +++     L  LP  +      LE + + 
Sbjct: 256 SLVEINLAHN---NLTLLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 38  KGWENVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95
           +G  ++++L ++Q+QI+ +          L+ + L  N  L ++    F  +  L+ + +
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHL 286

Query: 96  SN 97
            +
Sbjct: 287 HH 288

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 46/255 (18%), Positives = 85/255 (33%), Gaps = 42/255 (16%)

Query: 63  PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDIS 122
                L L+ N+ L+ +  G F  +  L  L +S+ G              +SL+ LD+S
Sbjct: 28  SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 123 CTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPE 182
             G+  +      L  L+ L+ + +  L ++     S F  LR L    I +     A  
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFN 143

Query: 183 DSVLFGGGEVLIQELLGLKYLEVLELS------------LGSYHALQIL-LSSNKLKSCI 229
                           GL  LEVL+++                  L  L LS  +L+  +
Sbjct: 144 GI------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-L 190

Query: 230 RSLCLDG-FELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCH--KLKDVTFLVFAP--- 283
                +    L+ L + +        + F ++ L+ + ++      +             
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

Query: 284 NLKSLDLDG----CD 294
           +L  L+L      C 
Sbjct: 249 SLAFLNLTQNDFACT 263

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           N+  L +                  L  L +  N   E      F  + +L  L +S C 
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC- 185

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLR 145
             +L+ L        SSL++L++S      L     K L +L+ L+  
Sbjct: 186 --QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 42  NVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100
           +++ L L  N + T+S        L  L    +   +M     F  + +L  L +S+   
Sbjct: 79  SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-- 136

Query: 101 GRLK-LPVGM-SVLGSSLELLDIS-CTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQ 156
              +    G+ + L SSLE+L ++  +       +   +L NL  L+L     L ++   
Sbjct: 137 -HTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT 193

Query: 157 LISKFSRLRVLRM 169
             +  S L+VL M
Sbjct: 194 AFNSLSSLQVLNM 206

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 54/350 (15%), Positives = 105/350 (30%), Gaps = 71/350 (20%)

Query: 41  ENVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
            +   L    N + T+  +      +L  L L   Q +  I +  FQ    L  L ++  
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN 91

Query: 99  GQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQ 156
               L  +         +L+ L    TGI+ +    L     L+ L L     +  I   
Sbjct: 92  ---PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLP 147

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHAL 216
                 +L+VL       +  H   ++             +  L+    L L+       
Sbjct: 148 KGFPTEKLKVLDF---QNNAIHYLSKED------------MSSLQQATNLSLN------- 185

Query: 217 QILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTM--VLCHKLK 274
              L+ N +   I     D    + L    T+ +    +      +  + +        +
Sbjct: 186 ---LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 275 DVTFLVFAP----NLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED-- 328
           D++  VF      +++S++L          ++               F  LQ L+L    
Sbjct: 242 DISPAVFEGLCEMSVESINLQKH----YFFNISSNT--------FHCFSGLQELDLTATH 289

Query: 329 ----------LPNLESIYWKPL---PFTRLKEMAVLGCDQLEKLPVDSNS 365
                     L  L+ +    L    F  L +++      L  L +  N+
Sbjct: 290 LSELPSGLVGLSTLKKLV---LSANKFENLCQISASNFPSLTHLSIKGNT 336

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 48/279 (17%), Positives = 96/279 (34%), Gaps = 44/279 (15%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
            +++L L  N+ E + ++     P L  L +  N +   +  G  + + +L+ L +S+  
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLI 158
                         S L+ L++S      L  E  K+   L+ L+L +T  L     Q  
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQ-- 418

Query: 159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS--------- 209
           S F  L +L++  + +     + E                GL  L+ L L          
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSEQL------------FDGLPALQHLNLQGNHFPKGNI 466

Query: 210 -----LGSYHALQIL-LSSNKLKSCIRSLCLDGFE-LEELKIDYTEIVRKRREPFVFRNL 262
                L +   L+IL LS   L S I        + +  + + +  +           +L
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHL 523

Query: 263 HRVTMVLCH-KLKDVTFLVFA--PNLKSLDLDG----CD 294
             + + L    +  +   +       ++++L      C 
Sbjct: 524 KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 56/339 (16%), Positives = 100/339 (29%), Gaps = 73/339 (21%)

Query: 46  LSLMQNQIETV-SEVPTCPHLLTLFLDFNQELEMIADGF-FQLMPSLKVLKMSNCGQGRL 103
           L+L  N I  +           +L     Q L +I  G     + SL +    +     +
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 104 --KLPVGMSVLG----------------------SSLELLDISCTGITELPEELKKLVNL 139
              +  G+  +                       S L+ LD++ T ++ELP  L  L  L
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL 303

Query: 140 KCLNLRWTGALIRIPRQLISKFSRLRVLRM------FAIGYDRFHEAPEDSVL------F 187
           K L L        + +   S F  L  L +        +G            L       
Sbjct: 304 KKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 188 GGGEVLIQELLGLKYLEVLELS-----------LGSYHALQIL-LSSNKLKSCIRSLCLD 235
              +    +L  L +L+ L LS                 L++L L+  +LK         
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 236 GFE-LEELKIDYTEIVRKRREPFVFRNLHR-VTMVLCH-KLKDVTFLVFA-----PNLKS 287
               L+ L + ++ +        +F  L     + L                     L+ 
Sbjct: 423 NLHLLKVLNLSHSLL--DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 288 LDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNL 326
           L L  CD    + S+ + A         +  + +  ++L
Sbjct: 481 LVLSFCD----LSSIDQHA--------FTSLKMMNHVDL 507

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 44/256 (17%)

Query: 110 SVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLR 168
             L +S E L+ S   +  +      +L+NL  L+L     +  I         RL  L 
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLV 87

Query: 169 MFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-----------LGSYHALQ 217
           +     +      E +            L G K L+ L              L +   L+
Sbjct: 88  L---TANPLIFMAETA------------LSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 218 IL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFV-FRNLHRVTMVLCH-KLK 274
            L L SN + S          +L+ L      I    +E     +    +++ L    + 
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 275 DVTFLVFA-PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED--LPN 331
            +    F     +SL+  G   +  I    K           S  ++L     ED    +
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN----------STIQSLWLGTFEDMDDED 242

Query: 332 LESIYWKPLPFTRLKE 347
           +    ++ L    ++ 
Sbjct: 243 ISPAVFEGLCEMSVES 258

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 68/350 (19%), Positives = 116/350 (33%), Gaps = 62/350 (17%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
            V  L+L   QIE +          +  L++ FN  +  +    FQ +P L VL +    
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN- 133

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQL 157
              L  LP G+      L  L +S   +  + ++  +   +L+ L L     L  +    
Sbjct: 134 --DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--- 187

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL------IQELLG--LKYLEVLELS 209
           +S    L    +    Y+          +    E L      I  + G     L +L+L 
Sbjct: 188 LSLIPSLFHANV---SYNLLSTLAIPIAV----EELDASHNSINVVRGPVNVELTILKLQ 240

Query: 210 ---------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE-LEELKIDYTEIVRKRREPFV 258
                    L +Y  L  + LS N+L+  I        + LE L I    +         
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL---VALNLY 296

Query: 259 FRNLHRVTMV-LCH-KLKDVTFLVFA-PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI 315
            + +  + ++ L H  L  V         L++L LD       I+++            +
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN----SIVTL-----------KL 341

Query: 316 SPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNS 365
           S    L+ L L      +    + L F  +   AV   DQ  K+      
Sbjct: 342 STHHTLKNLTLSHND-WDCNSLRAL-FRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 44/227 (19%), Positives = 81/227 (35%), Gaps = 17/227 (7%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMP 88
           L +   +  +  +  + L  N++E +   P      L  L++  N+ L  + + + Q +P
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVAL-NLYGQPIP 301

Query: 89  SLKVLKMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRW 146
           +LKVL +S+     L  +          LE L +    I  L       L NL   +  W
Sbjct: 302 TLKVLDLSHN---HLLHVERNQPQF-DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357

Query: 147 TGALIRIPRQLISKFSRLRVL---RMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYL 203
               +   R L    +R  V    +   I Y   H            + L+Q +     +
Sbjct: 358 DCNSL---RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 204 EVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFE-LEELKIDYTEI 249
           E ++ + G   A   + S   L   I        +  E+L+ +  E+
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 40/203 (19%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100
            ++   ++  N +   S +     +  L    N  + ++          L +LK+ +   
Sbjct: 192 PSLFHANVSYNLL---STLAIPIAVEELDASHNS-INVVRGPVNV---ELTILKLQHNNL 244

Query: 101 GRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLIS 159
                 +        L  +D+S   + ++      K+  L+ L +     L+ +      
Sbjct: 245 TDTAWLLNY----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLY--- 296

Query: 160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS--------LG 211
               +  L++  + ++       +                   LE L L         L 
Sbjct: 297 -GQPIPTLKVLDLSHNHLLHVERN-------------QPQFDRLENLYLDHNSIVTLKLS 342

Query: 212 SYHALQIL-LSSNKLK-SCIRSL 232
           ++H L+ L LS N    + +R+L
Sbjct: 343 THHTLKNLTLSHNDWDCNSLRAL 365

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 38/276 (13%), Positives = 80/276 (28%), Gaps = 63/276 (22%)

Query: 114 SSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172
           ++ +++    + + +LP   L     ++ LNL     +  I     +    ++ L M   
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYM--- 106

Query: 173 GYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-----------LGSYHALQIL-L 220
           G++     P                  +  L VL L              +   L  L +
Sbjct: 107 GFNAIRYLPPHV------------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154

Query: 221 SSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFL 279
           S+N L+  I          L+ L++    +     +  +  +L    +        ++ L
Sbjct: 155 SNNNLER-IEDDTFQATTSLQNLQLSSNRL--THVDLSLIPSLFHANVSYNL----LSTL 207

Query: 280 VFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNL-----------ED 328
                ++ LD         I  V                  L  L L            +
Sbjct: 208 AIPIAVEELDASHN----SINVV-----------RGPVNVELTILKLQHNNLTDTAWLLN 252

Query: 329 LPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSN 364
            P L  +        ++     +   +LE+L + +N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 64/367 (17%), Positives = 126/367 (34%), Gaps = 94/367 (25%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
           + +       + V  L   +  I+++  V    +L  +    NQ L  I     + +  L
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ-LTDIT--PLKNLTKL 92

Query: 91  KVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGAL 150
             + M+N    ++     ++ L ++L  L +    IT++   LK L NL  L L      
Sbjct: 93  VDILMNNN---QIADITPLANL-TNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN--- 144

Query: 151 IRIPRQL--ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLEL 208
                 +  IS  S L  L+  + G                    ++ L  L  LE L++
Sbjct: 145 -----TISDISALSGLTSLQQLSFGNQVTD---------------LKPLANLTTLERLDI 184

Query: 209 S---------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKRR 254
           S         L     L+ L  ++N++        +        L+EL ++  ++    +
Sbjct: 185 SSNKVSDISVLAKLTNLESLIATNNQISD------ITPLGILTNLDELSLNGNQL----K 234

Query: 255 EPFVFRNLHRVTMVLCH--KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMM 312
           +     +L  +T +     ++ ++  L     L  L L         IS           
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-----IS----------- 278

Query: 313 GHISPFENLQRL--------------NLEDLPNLESIYWKPLPFTRLKEMAVLG-CDQLE 357
            +ISP   L  L               + +L NL  +    L F  + +++ +    +L+
Sbjct: 279 -NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT---LYFNNISDISPVSSLTKLQ 334

Query: 358 KLPVDSN 364
           +L   +N
Sbjct: 335 RLFFYNN 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 6e-12
 Identities = 67/366 (18%), Positives = 134/366 (36%), Gaps = 90/366 (24%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
           L +   +K    +  + +  NQI  ++ +    +L  L L  NQ +  I     + + +L
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ-ITDIDP--LKNLTNL 136

Query: 91  KVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGAL 150
             L++S+     +     +S L +SL+ L      +T+L + L  L  L+ L++      
Sbjct: 137 NRLELSSN---TISDISALSGL-TSLQQLSFGNQ-VTDL-KPLANLTTLERLDISSN--- 187

Query: 151 IRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS- 209
            ++    IS  ++L  L       ++  +              I  L  L  L+ L L+ 
Sbjct: 188 -KV--SDISVLAKLTNLESLIATNNQISD--------------ITPLGILTNLDELSLNG 230

Query: 210 --------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKRREP 256
                   L S   L  L L++N++ +      L        L ELK+   +I       
Sbjct: 231 NQLKDIGTLASLTNLTDLDLANNQISN------LAPLSGLTKLTELKLGANQI----SNI 280

Query: 257 FVFRNLHRVTMVLCH--KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGH 314
                L  +T +  +  +L+D++ +    NL  L L   +     IS             
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-----IS------------D 323

Query: 315 ISPFENLQRL--------------NLEDLPNLESIYWKPLPFTRLKEMAVLG-CDQLEKL 359
           ISP  +L +L              +L +L N+  +        ++ ++  L    ++ +L
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLS---AGHNQISDLTPLANLTRITQL 380

Query: 360 PVDSNS 365
            ++  +
Sbjct: 381 GLNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 62/365 (16%), Positives = 129/365 (35%), Gaps = 88/365 (24%)

Query: 30  GLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPS 89
           G+K    V+   N+ +++   NQ+  ++ +     L+ + ++ NQ +  I       + +
Sbjct: 57  GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ-IADITP--LANLTN 113

Query: 90  LKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGA 149
           L  L + N    ++     +  L ++L  L++S   I+++   L  L +L+ L+      
Sbjct: 114 LTGLTLFNN---QITDIDPLKNL-TNLNRLELSSNTISDIS-ALSGLTSLQQLSFG---- 164

Query: 150 LIRIPRQL--ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLE 207
                 Q+  +   + L  L    I  ++  +              I  L  L  LE L 
Sbjct: 165 -----NQVTDLKPLANLTTLERLDISSNKVSD--------------ISVLAKLTNLESLI 205

Query: 208 LS---------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKR 253
            +         LG    L  L L+ N+LK       +        L +L +   +I    
Sbjct: 206 ATNNQISDITPLGILTNLDELSLNGNQLKD------IGTLASLTNLTDLDLANNQI---- 255

Query: 254 REPFVFRNLHRVTMVLCH--KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEM 311
                   L ++T +     ++ +++ L     L +L+L+    +E+I            
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISP---------- 304

Query: 312 MGHISPFENLQRLNLED-----------LPNLESIYWKPLPFTRLKEMAVLG-CDQLEKL 359
              IS  +NL  L L             L  L+ ++       ++ +++ L     +  L
Sbjct: 305 ---ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF---FYNNKVSDVSSLANLTNINWL 358

Query: 360 PVDSN 364
               N
Sbjct: 359 SAGHN 363

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 61/356 (17%), Positives = 110/356 (30%), Gaps = 92/356 (25%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100
               +  L +  +           + TL  D    ++ I     + + +L  +  SN   
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG-IKSID--GVEYLNNLTQINFSNN-- 78

Query: 101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQL--I 158
            +L     +  L + L  + ++   I ++   L  L NL  L L           Q+  I
Sbjct: 79  -QLTDITPLKNL-TKLVDILMNNNQIADIT-PLANLTNLTGLTLFNN--------QITDI 127

Query: 159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS--------L 210
                L  L    +  +   +              I  L GL  L+ L           L
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--------------ISALSGLTSLQQLSFGNQVTDLKPL 173

Query: 211 GSYHALQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKRREPFVFRNLHRV 265
            +   L+ L +SSNK+        +        LE L     +I     +      L  +
Sbjct: 174 ANLTTLERLDISSNKVSD------ISVLAKLTNLESLIATNNQI----SDITPLGILTNL 223

Query: 266 TMVLCH--KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQR 323
             +  +  +LKD+  L    NL  LDL       +I +             ++P   L +
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANN----QISN-------------LAPLSGLTK 266

Query: 324 L--------------NLEDLPNLESIYWKPLPFTRLKEMAVLG-CDQLEKLPVDSN 364
           L               L  L  L ++    L   +L++++ +     L  L +  N
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISPISNLKNLTYLTLYFN 319

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 47/263 (17%), Positives = 82/263 (31%), Gaps = 39/263 (14%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           N   L  +  ++  + +        L  + +  N  LE+I    F  +P L  +++    
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELK-KLVNLKCLNLRWTGALIRIPRQLI 158
                +         +L+ L IS TGI  LP+  K   +    L+++    +  I R   
Sbjct: 91  NLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 159 SKFS-RLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQ 217
              S    +L +     +   E    +  F G              ++ EL         
Sbjct: 150 VGLSFESVILWL---NKNGIQEIHNSA--FNG-------------TQLDEL--------- 182

Query: 218 ILLSSNKLKSCIRSLCLDG-FELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV 276
            L  +N L   + +    G      L I  T I       +   NL ++     + LK +
Sbjct: 183 NLSDNNNL-EELPNDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLRARSTYNLKKL 239

Query: 277 TFLVFAPNLKSLDLDG---CDAM 296
             L     L    L     C A 
Sbjct: 240 PTLEKLVALMEASLTYPSHCCAF 262

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 59/319 (18%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
           ++  ++   NQ+E + E+   P L  ++ D N  L+ +      L  SL+ +   N    
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-LKKL----PDLPLSLESIVAGNN--- 225

Query: 102 RLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKF 161
            L+    +  L   L  +      +  LP+    L  L   +   T         L    
Sbjct: 226 ILEELPELQNL-PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT--------DLPELP 276

Query: 162 SRLRVLRMFAIGYDRFHEAPED----SVLFGGGEVLIQELLGLKYLEV-------LELSL 210
             L  L +    +    E P +    +        L      L+ L V       L    
Sbjct: 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP 336

Query: 211 GSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVL 269
                L+ L  S N L             L++L ++Y  +      P    +L      +
Sbjct: 337 PR---LERLIASFNHLAEVPELPQ----NLKQLHVEYNPLREFPDIPESVEDLR-----M 384

Query: 270 CHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL 329
              L +V  L    NLK L ++               E P++        +++ L +   
Sbjct: 385 NSHLAEVPELP--QNLKQLHVETN----------PLREFPDIPE------SVEDLRMNSE 426

Query: 330 PNLESIYWKPLPFTRLKEM 348
             ++   +      +L++ 
Sbjct: 427 RVVDPYEFAHETTDKLEDD 445

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 66/357 (18%), Positives = 121/357 (33%), Gaps = 70/357 (19%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100
             +  L +  NQ+E + E+     L  + +D N  L+ +      L PSL+ +   N   
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKL----PDLPPSLEFIAAGNN-- 183

Query: 101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISK 160
            +L+    +  L   L  +      + +LP+    L ++   N              + +
Sbjct: 184 -QLEELPELQNL-PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE---------ELPE 232

Query: 161 FSRLRVLRMFAIGYDRFHEAPED-------SVLFGGGEVLIQELLGLKYLEVLELSLGSY 213
              L  L       +     P+        +V       L +    L +L+V E      
Sbjct: 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292

Query: 214 HA----LQIL-LSSNKLKSCIRSLCLDGFELEELKIDY---TEIVRKRREPFVFRNLHRV 265
                 L  L  SSN+++S           LEEL +      E+      P +   L R+
Sbjct: 293 SELPPNLYYLNASSNEIRSLCDLPP----SLEELNVSNNKLIEL------PALPPRLERL 342

Query: 266 TMVLCHKLKDVTFLVFAPNLKSLDLDGC---------DAMEEIISVGKFAETPEMMGHIS 316
                + L +V  L    NLK L ++           +++E++      AE PE+     
Sbjct: 343 I-ASFNHLAEVPELP--QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ--- 396

Query: 317 PFENLQRLNLED---------LPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSN 364
              NL++L++E            ++E +           E A    D+LE    + +
Sbjct: 397 ---NLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 54/357 (15%), Positives = 97/357 (27%), Gaps = 103/357 (28%)

Query: 46  LSLMQNQIETV-SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK 104
                + +  +  E          +  +++       G  +    + V ++ +C   +  
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-EMAVSRLRDCLDRQAH 74

Query: 105 -----------LPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRI 153
                      LP         LE L  SC  +TELPE  + L +L   N     AL  +
Sbjct: 75  ELELNNLGLSSLPELPP----HLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDL 129

Query: 154 PRQL------------ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK 201
           P  L            + +      L++  +  +   + P+                   
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD----------------LPP 173

Query: 202 YLEVLELS---------LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVR 251
            LE +            L +   L  +   +N LK            LE +      +  
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL----SLESIVAGNNIL-- 227

Query: 252 KRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEM 311
              E    +NL                    P L ++  D                 P++
Sbjct: 228 --EELPELQNL--------------------PFLTTIYADNN----------LLKTLPDL 255

Query: 312 MGHISPFENLQRLNLEDLP----NLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSN 364
              +    N++   L DLP    +L  +      F+ L E+       L  L   SN
Sbjct: 256 PPSLEAL-NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP----PNLYYLNASSN 307

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 26/124 (20%)

Query: 40  WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
             ++  L++  N++  +      P L  L   FN  L  + +    L  +LK L +    
Sbjct: 316 PPSLEELNVSNNKLIELPA--LPPRLERLIASFNH-LAEVPE----LPQNLKQLHVEYN- 367

Query: 100 QGRLK-LPVGMSVLGS---------------SLELLDISCTGITELPEELKKLVNLKCLN 143
              L+  P     +                 +L+ L +    + E P+  + + +L+  +
Sbjct: 368 --PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNS 425

Query: 144 LRWT 147
            R  
Sbjct: 426 ERVV 429

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 42/213 (19%), Positives = 73/213 (34%), Gaps = 45/213 (21%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ---------------E 75
           L+E P+++    +  +    N ++T+ +    P L  L +  N                 
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDLPELPQSLTFLDV 284

Query: 76  LEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKK 135
            E I  G  +L P+L  L  S+     L        L  SLE L++S   + ELP    +
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIRSL------CDLPPSLEELNVSNNKLIELPALPPR 338

Query: 136 LVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQ 195
           L  L          L  +P         L+ L    + Y+   E P+          + +
Sbjct: 339 LERLIASFNH----LAEVPELP----QNLKQLH---VEYNPLREFPD----------IPE 377

Query: 196 ELLGLKYLEVLELSLGSYHALQIL-LSSNKLKS 227
            +  L+    L         L+ L + +N L+ 
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 39  GWENVRRLSLMQNQIETVSEVPTCPHLLT----LFLDFNQELEMIADGFFQLMPSLKVLK 94
               +  L L  NQ++ +S++      +     L +  N        G      SL  L 
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 95  MSNCGQGRLKLPVGM-SVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRI 153
           MS+       L   +   L   +++LD+    I  +P+++ KL  L+ LN+  +  L  +
Sbjct: 406 MSSN-----ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVA-SNQLKSV 459

Query: 154 PRQLISKFSRLRVLRMF 170
           P  +  + + L+ + + 
Sbjct: 460 PDGIFDRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 55/332 (16%), Positives = 96/332 (28%), Gaps = 36/332 (10%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
            +  L L  N++  +S  PT  +L  L L FN    +     F  M  LK L +S     
Sbjct: 70  ELEYLDLSHNKLVKISCHPT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 102 RLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKC-LNLRWTGALIRIPRQLISK 160
           +  +     +  S + L+     G  E PE L+        +          I    +  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 161 FSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILL 220
            + L +  +  +  D        S+L           L L  +E    S      LQ++ 
Sbjct: 189 VANLELSNIKCVLEDNKCSYFL-SILAKLQTNPKLSNLTLNNIETTWNSF--IRILQLVW 245

Query: 221 SSNKLKSCIRSLCLDGF-----------ELEELKIDYTEIVRKRREPF-VFRNLHRVT-- 266
            +      I ++ L G             L+ L I              ++     +   
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 267 MVLCHKLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRL 324
                  + V  L  +       LD                 +T     +      L+ L
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNN----------LLTDTVF--ENCGHLTELETL 353

Query: 325 NLEDLPN-LESIYWKPLPFTRLKEMAVLGCDQ 355
            L+   N L+ +       T++K +  L   Q
Sbjct: 354 ILQM--NQLKELSKIAEMTTQMKSLQQLDISQ 383

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 48/276 (17%), Positives = 88/276 (31%), Gaps = 48/276 (17%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
           ++   D       + L L+  +      +     L  L    N+     +      +PSL
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGNAFS---EVDLPSL 349

Query: 91  KVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGAL 150
           + L +S  G              +SL+ LD+S  G+  +      L  L+ L+ + +  L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-L 408

Query: 151 IRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSL 210
            ++     S F  LR L    I +     A                  GL  LEVL+   
Sbjct: 409 KQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGI------------FNGLSSLEVLK--- 451

Query: 211 GSYHALQILLSSNKLKSCIRSLCLDGFE-LEELKIDY---TEIVRKRREPFVFRNLHRVT 266
                    ++ N  +             L  L +      ++      P  F +L  + 
Sbjct: 452 ---------MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----SPTAFNSLSSLQ 497

Query: 267 MV-LCH-KLKDVTFLVFA--PNLKSLDLDG----CD 294
           ++ +   +LK V   +F    +L+ + L      C 
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 47/313 (15%), Positives = 101/313 (32%), Gaps = 29/313 (9%)

Query: 42  NVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           ++++L  ++  + ++   P      L  L +  N         +F  + +L+ L +S+  
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 100 QGRLKLPV--GMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQL 157
              +       +  +      LD+S   +  +     K + L  L LR     + + +  
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPE-DSVLFGGGEVLIQELLGLKYLEVLELSL-GSYHA 215
           I   + L V R+    +       + D     G   L  E   L YL+     +   ++ 
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 216 LQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKD 275
           L  + S + +   I  +    +      ++       +      ++L R+T    +K  +
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-TSNKGGN 339

Query: 276 VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED------- 328
               V  P+L+ LDL               +             +L+ L+L         
Sbjct: 340 AFSEVDLPSLEFLDLSRN----------GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 329 -----LPNLESIY 336
                L  LE + 
Sbjct: 390 SNFLGLEQLEHLD 402

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 57/343 (16%), Positives = 108/343 (31%), Gaps = 52/343 (15%)

Query: 41  ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
            + + L L  N +  +      + P L  L L   + ++ I DG +Q +  L  L ++  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86

Query: 99  GQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQ 156
               ++ L +G     SSL+ L    T +  L    +  L  LK LN+     +      
Sbjct: 87  ---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFK-- 140

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHAL 216
           L   FS L  L    +  ++                    L  L  + +L LSL      
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTD------------LRVLHQMPLLNLSLD----- 183

Query: 217 QILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMV-------- 268
              LS N +   I+        L +L +               + L  + +         
Sbjct: 184 ---LSLNPMNF-IQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 269 LCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED 328
               L+          L +L ++          +    +    + ++S F +L  + +E 
Sbjct: 239 NEGNLEKFDKSAL-EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF-SLVSVTIER 296

Query: 329 LPN------LESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNS 365
           + +       + +      F +      L    L++L   SN 
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNK 336

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 40/274 (14%), Positives = 74/274 (27%), Gaps = 42/274 (15%)

Query: 112 LGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMF 170
           L  S + LD+S   +  L          L+ L+L     +  I        S L  L + 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLIL- 83

Query: 171 AIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-----------LGSYHALQIL 219
               +        +              GL  L+ L              +G    L+ L
Sbjct: 84  --TGNPIQSLALGA------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 220 -LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPF-VFRNLHRVTMVL---CHKL 273
            ++ N ++S            LE L +   +I         V   +  + + L    + +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 274 KDVTFLVFA-PNLKSLDLDGCDAMEEIISVGKFAETPE------MMGHISPFENLQRLNL 326
             +    F    L  L L        ++                ++G      NL++ + 
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 327 EDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLP 360
             L  L ++  +      L        D    L 
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.8 bits (153), Expect = 6e-11
 Identities = 51/353 (14%), Positives = 102/353 (28%), Gaps = 71/353 (20%)

Query: 36  DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ--ELEMIADGFFQLMPSLKVL 93
             +    +  L    + I  ++ +     L  L    N    L+           +L  L
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD------LSQNTNLTYL 90

Query: 94  KMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIR 152
              +    +L  L V      + L  L+     +T+L   + +   L  LN      L  
Sbjct: 91  ACDSN---KLTNLDVTPL---TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTE 141

Query: 153 IPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVL------ 206
           I    +S  ++L  L                       ++   ++     L  L      
Sbjct: 142 ID---VSHNTQLTELD-----------------CHLNKKITKLDVTPQTQLTTLDCSFNK 181

Query: 207 --ELSLGSYHALQIL-LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNL 262
             EL +     L  L   +N +      L L+   +L  L     ++            L
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNIT----KLDLNQNIQLTFLDCSSNKLTE-----IDVTPL 232

Query: 263 HRVTMVLCH--KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFEN 320
            ++T   C    L ++        L +L     D +E  I +    +             
Sbjct: 233 TQLTYFDCSVNPLTELDVSTL-SKLTTLHCIQTDLLE--IDLTHNTQLIYF--QAEGCRK 287

Query: 321 LQRLNLEDLPNLESIYW-----KPLPFTRLKEMAVLGCD--QLEKLPVDSNSA 366
           ++ L++     L  +         L  ++  ++  L  +  +L +L V  N+ 
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTK 340

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 46/208 (22%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
                DV     +  L    N+I  + +V     L  L  D N  +  +          L
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNN-ITKLD---LNQNIQL 214

Query: 91  KVLKMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTG 148
             L  S+    +L  + V      + L   D S   +TEL    L KL  L C+      
Sbjct: 215 TFLDCSSN---KLTEIDVTPL---TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD--- 265

Query: 149 ALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVL-- 206
            L+ I    ++  ++L   +                   G  ++   ++     L +L  
Sbjct: 266 -LLEID---LTHNTQLIYFQ-----------------AEGCRKIKELDVTHNTQLYLLDC 304

Query: 207 ------ELSLGSYHALQIL-LSSNKLKS 227
                 EL L     L  L L++ +L  
Sbjct: 305 QAAGITELDLSQNPKLVYLYLNNTELTE 332

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 9e-11
 Identities = 48/286 (16%), Positives = 89/286 (31%), Gaps = 55/286 (19%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
            V+ L L  N+I  +S      C +L  L L  N  +  I +  F  + SL+ L +S   
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN- 110

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEE--LKKLVNLKCLNLRWTGALIRIPRQ 156
              L  L        SSL  L++       L E      L  L+ L +       +I R+
Sbjct: 111 --YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS------- 209
             +  + L  L +              S            L  ++ +  L L        
Sbjct: 169 DFAGLTFLEELEI---DASDLQSYEPKS------------LKSIQNVSHLILHMKQHILL 213

Query: 210 ----LGSYHALQIL-LSSNKLKSC----IRSLCLDGF----ELEELKIDYTEIVRKRREP 256
               +    +++ L L    L +     + +   +          +KI    +    +  
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL---FQVM 270

Query: 257 FVFRNLHRVTMV-LCH-KLKDVTFLVFA--PNLKSLDLDG----CD 294
            +   +  +  +     +LK V   +F    +L+ + L      C 
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 35/269 (13%)

Query: 41  ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
            +   L L  N+I  + +       +L TL L  N+ +  I+ G F  +  L+ L +S  
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN 110

Query: 99  GQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTG-ALIRIPR 155
              +LK LP  M     +L+ L +    IT++ +     L  +  + L         I  
Sbjct: 111 ---QLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 156 QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA 215
                  +L  +R+           P+   L      L   L G K  +V   SL   + 
Sbjct: 165 GAFQGMKKLSYIRI---ADTNITTIPQG--LPPSLTEL--HLDGNKITKVDAASLKGLNN 217

Query: 216 LQIL-LSSNKLKSCIRSLCLDGFE-LEELKIDYTEIVRKRREPFVFRNLHRVTMV-LCH- 271
           L  L LS N + S + +  L     L EL ++  ++    + P    +   + +V L + 
Sbjct: 218 LAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKL---VKVPGGLADHKYIQVVYLHNN 273

Query: 272 KLKDVTFLVFAP--------NLKSLDLDG 292
            +  +    F P        +   + L  
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 45/227 (19%)

Query: 97  NCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIP 154
            C    L+ +P  +        LLD+    ITE+ +   K L NL  L L     + +I 
Sbjct: 37  QCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKIS 92

Query: 155 RQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL------IQELL-----GLKYL 203
               +   +L  L +     ++  E PE   +    + L      I ++      GL  +
Sbjct: 93  PGAFAPLVKLERLYL---SKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 204 EVLELS---LGSYH----------ALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEI 249
            V+EL    L S             L  + ++   + + I         L EL +D  +I
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPS--LTELHLDGNKI 204

Query: 250 VRKRREPFVFRNLHRVTM-VLCH-KLKDVTFLVFA--PNLKSLDLDG 292
              + +    + L+ +    L    +  V     A  P+L+ L L+ 
Sbjct: 205 --TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 57/275 (20%), Positives = 92/275 (33%), Gaps = 50/275 (18%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           +   L L  N I  + +       HL  L L  N+ +  I +  F  +  L+ L +S   
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN- 112

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQL 157
              L  +P  +    SSL  L I    I ++P+     L N+ C+ +        +    
Sbjct: 113 --HLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN----PLENSG 163

Query: 158 ISK--FSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLE------VLELS 209
                F  L+ L    I   +    P+D  L       + EL    +L+      +    
Sbjct: 164 FEPGAFDGLK-LNYLRISEAKLTGIPKD--LPET----LNEL----HLDHNKIQAIELED 212

Query: 210 LGSYHALQIL-LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLH---- 263
           L  Y  L  L L  N++   I +  L     L EL +D  ++    R P    +L     
Sbjct: 213 LLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKL---SRVPAGLPDLKLLQV 268

Query: 264 ------RVTMVLCHKLKDVTFLVFAPNLKSLDLDG 292
                  +T V  +    V F V       + L  
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 53/263 (20%), Positives = 93/263 (35%), Gaps = 59/263 (22%)

Query: 97  NCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIP 154
            C    LK +P  +S       LLD+    I+EL ++  K L +L  L L     + +I 
Sbjct: 39  QCSDLGLKAVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIH 94

Query: 155 RQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL------IQEL-----LGLKYL 203
            +  S   +L+ L +     +   E P +  L      L      I+++      GL+ +
Sbjct: 95  EKAFSPLRKLQKLYI---SKNHLVEIPPN--LPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 204 EVLELSLGSYHA------------LQIL-LSSNKLKSCIRSLCLDGFE-LEELKIDYTEI 249
             +E+                   L  L +S  KL      +  D  E L EL +D+ +I
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL----TGIPKDLPETLNELHLDHNKI 205

Query: 250 VRKRREPFVFRNLHRVTM-VLCH-KLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKF 305
             +  E        ++    L H +++ +     +  P L+ L LD            K 
Sbjct: 206 --QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN----------KL 253

Query: 306 AETPEMMGHISPFENLQRLNLED 328
           +  P     +   + LQ + L  
Sbjct: 254 SRVPA---GLPDLKLLQVVYLHT 273

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 46/269 (17%), Positives = 82/269 (30%), Gaps = 39/269 (14%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
             + L L+  +     + PT        L F       A     L PSL+ L +S  G  
Sbjct: 305 GWQHLELVNCKF---GQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLS 360

Query: 102 RLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKF 161
                       +SL+ LD+S  G+  +      L  L+ L+ + +         +    
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 162 SRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS------------ 209
             L  L    I +     A                  GL  LEVL+++            
Sbjct: 421 RNLIYLD---ISHTHTRVAFNGI------------FNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 210 LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMV 268
                 L  L LS  +L+    +       L+ L + +        + F ++ L+ + ++
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTFPYKCLNSLQVL 523

Query: 269 LCH--KLKDV---TFLVFAPNLKSLDLDG 292
                 +          F  +L  L+L  
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 49/320 (15%), Positives = 106/320 (33%), Gaps = 43/320 (13%)

Query: 42  NVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           ++++L  ++  + ++   P      L  L +  N         +F  + +L+ L +S+  
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN- 159

Query: 100 QGRLKLPV-----GMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIP 154
             +++         +  +      LD+S   +  +     K + L  L LR     + + 
Sbjct: 160 --KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 155 RQLISKFSRLRVLRMFAIGYDRFHEAPE-DSVLFGGGEVLIQELLGLKYLEV----LELS 209
           +  I   + L V R+    +       + D     G   L  E   L YL+     +   
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 210 LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMV 268
                 +    L S  ++          F  + L++   +    +      ++L R+T  
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKF--GQFPTLKLKSLKRLTF- 332

Query: 269 LCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED 328
             +K  +    V  P+L+ LDL        +   G  +++           +L+ L+L  
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRN----GLSFKGCCSQS------DFGTTSLKYLDLSF 382

Query: 329 ------------LPNLESIY 336
                       L  LE + 
Sbjct: 383 NGVITMSSNFLGLEQLEHLD 402

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 8/133 (6%)

Query: 39  GWENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97
           G  +++ L L  N + T+S        L  L    +   +M     F  + +L  L +S+
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 98  CGQGRLK-LPVGMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIRIP 154
                 +    G+    SSLE+L ++     E  LP+   +L NL  L+L     L ++ 
Sbjct: 431 T---HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS 486

Query: 155 RQLISKFSRLRVL 167
               +  S L+VL
Sbjct: 487 PTAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 38  KGWENVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95
               N+  L +                  L  L +  N   E      F  + +L  L +
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 96  SNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRI 153
           S C   +L+ L        SSL++L++S      L     K L +L+ L+      +   
Sbjct: 478 SQC---QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 154 PRQLISKFSRLRVLRM 169
            ++L    S L  L +
Sbjct: 535 KQELQHFPSSLAFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 64/347 (18%), Positives = 107/347 (30%), Gaps = 55/347 (15%)

Query: 42  NVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           + + L L  N +  +      + P L  L L   + ++ I DG +Q +  L  L ++   
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN- 86

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRW---TGALIRIP 154
              ++ L +G     SSL+ L    T +  L    +  L  LK LN+          ++P
Sbjct: 87  --PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLP 142

Query: 155 RQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK----YLEVLELSL 210
            +  S  + L  L    +  ++                +    L L      +  ++   
Sbjct: 143 -EYFSNLTNLEHLD---LSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 211 GSYHALQIL-LSSNKLKSCIRSLCLDGFE-LEELKIDYTEIVRKRR----EPFVFRNLHR 264
                L  L L +N     +   C+ G   LE  ++   E   +      +      L  
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 265 VTM-----VLCHKLKDVTFLVFA--PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISP 317
           +T+            D    +F    N+ S  L        I  V  F          S 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT----IERVKDF----------SY 302

Query: 318 FENLQRLNLED-----LPNLESIYWKPLPFTRLKEMAVLGCDQLEKL 359
               Q L L +      P L+    K L FT  K         L  L
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 55/311 (17%), Positives = 89/311 (28%), Gaps = 85/311 (27%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
           NV   SL+   IE V +         L L   +              SLK L  ++   G
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK-FGQFPTLKL---KSLKRLTFTSNKGG 338

Query: 102 RLKLPVGMSVLGSSLELLDIS---CTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLI 158
                V +     SLE LD+S    +      +      +LK L+L +   +I +     
Sbjct: 339 NAFSEVDLP----SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-F 392

Query: 159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQI 218
               +L  L      +    +  E SV            L L+ L  L++S         
Sbjct: 393 LGLEQLEHLDF---QHSNLKQMSEFSVF-----------LSLRNLIYLDIS--------- 429

Query: 219 LLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTF 278
                  +     +      LE LK+       +   P +F  L                
Sbjct: 430 ---HTHTRVAFNGIFNGLSSLEVLKMAGNSFQ-ENFLPDIFTEL---------------- 469

Query: 279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNL------------ 326
                NL  LDL  C          +  +        +   +LQ LN+            
Sbjct: 470 ----RNLTFLDLSQC----------QLEQLSPTA--FNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 327 -EDLPNLESIY 336
            + L +L+ + 
Sbjct: 514 YKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 41/278 (14%), Positives = 74/278 (26%), Gaps = 46/278 (16%)

Query: 110 SVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLR 168
             L  S + LD+S   +  L          L+ L+L     +  I        S L  L 
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLI 82

Query: 169 MFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS-----------LGSYHALQ 217
           +     +        +              GL  L+ L              +G    L+
Sbjct: 83  L---TGNPIQSLALGA------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 218 IL-LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCH---- 271
            L ++ N ++S            LE L +   +I          R LH++ ++       
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLS 185

Query: 272 --KLKDVTFLVFA-PNLKSLDLDGCDAMEEIISVGKFAETPEM------MGHISPFENLQ 322
              +  +    F    L  L L         +          +      +G      NL+
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNN-FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 323 RLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLP 360
           + +   L  L ++  +      L        D    L 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.1 bits (145), Expect = 5e-10
 Identities = 44/319 (13%), Positives = 93/319 (29%), Gaps = 88/319 (27%)

Query: 46  LSLMQNQIETVSEVPTCPHLLTLFLDFNQ--ELEMIADGFFQLMPSLKVLKMSNCGQGRL 103
              +   I+ +         +   L      +     +     + S+  +  +N     +
Sbjct: 4   TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNE-----LNSIDQIIANNSDIKSV 58

Query: 104 KLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSR 163
           +   G+  L  ++  L ++   +T++ + L  L NL  L L       +I    +S    
Sbjct: 59  Q---GIQYL-PNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDEN----KIKD--LSSLKD 107

Query: 164 LRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS---------LGSYH 214
           L+ L+  ++ ++   +              I  L+ L  LE L L          L    
Sbjct: 108 LKKLKSLSLEHNGISD--------------INGLVHLPQLESLYLGNNKITDITVLSRLT 153

Query: 215 ALQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKRREPFVFRNLHRVTMVL 269
            L  L L  N++        +        L+ L +    I                    
Sbjct: 154 KLDTLSLEDNQISD------IVPLAGLTKLQNLYLSKNHI-------------------- 187

Query: 270 CHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAE----------TPEMMGHISPFE 319
                D+  L    NL  L+L   + + + I+                +      IS   
Sbjct: 188 ----SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

Query: 320 NLQRLNLEDLPNLESIYWK 338
           + ++ N+    +L     +
Sbjct: 244 DYEKPNV--KWHLPEFTNE 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 5e-09
 Identities = 42/244 (17%), Positives = 76/244 (31%), Gaps = 54/244 (22%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIAD-GFFQLMPS 89
           +K+      +    + +L +  +           +  +  + +     I      Q +P+
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD----IKSVQGIQYLPN 66

Query: 90  LKVLKMSNCGQGRLKLPVGMSVLGS--SLELLDISCTGITELPEELKKLVNLKCLNLRWT 147
           +  L ++     +L     +  L +  +L  L +    I +L   LK L  LK L+L   
Sbjct: 67  VTKLFLNGN---KLT---DIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHN 119

Query: 148 GALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLE 207
                I    I+    L  L    +G ++  +              I  L  L  L+ L 
Sbjct: 120 ----GI--SDINGLVHLPQLESLYLGNNKITD--------------ITVLSRLTKLDTLS 159

Query: 208 LS---------LGSYHALQIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKR 253
           L          L     LQ L LS N +        L        L+ L++   E + K 
Sbjct: 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQECLNKP 213

Query: 254 REPF 257
               
Sbjct: 214 INHQ 217

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 21/117 (17%), Positives = 52/117 (44%), Gaps = 12/117 (10%)

Query: 30  GLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ--ELEMIADGFFQLM 87
            + +A       ++ ++    + I++V  +   P++  LFL+ N+  +++ + +     +
Sbjct: 32  SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTN-----L 86

Query: 88  PSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
            +L  L +      ++K    +  L   L+ L +   GI+++   L  L  L+ L L
Sbjct: 87  KNLGWLFLDEN---KIKDLSSLKDL-KKLKSLSLEHNGISDI-NGLVHLPQLESLYL 138

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 12/126 (9%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
            ++ LSL  N I  ++ +   P L +L+L  N+ +  I       +  L  L + +    
Sbjct: 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDN--- 163

Query: 102 RLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKF 161
           ++   V ++ L + L+ L +S   I++L   L  L NL  L L           + I+  
Sbjct: 164 QISDIVPLAGL-TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQ----ECLNKPINHQ 217

Query: 162 SRLRVL 167
           S L V 
Sbjct: 218 SNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIAD-GFFQLMPS 89
           + +   +     +  L L  N+I  ++ +     L TL L+ NQ    I+D      +  
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ----ISDIVPLAGLTK 176

Query: 90  LKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGIT-ELPEELKKLVNLKCLNL 144
           L+ L +S      L+    ++ L  +L++L++       +       LV    +  
Sbjct: 177 LQNLYLSKNHISDLR---ALAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 39  GWENVRRLSLMQNQIETVSEVPTCP-HLLTLFLDFNQEL---EMIADGFFQLMPSLKVLK 94
             + ++ L L +N ++   +V     ++ +L               D       S+ VL 
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 95  MSNCGQGRLKLPVGM-SVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRI 153
           +S+       L   +   L   +++LD+    I  +P+++  L  L+ LN+  +  L  +
Sbjct: 435 LSSN-----MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVA-SNQLKSV 488

Query: 154 PRQLISKFSRLRVLRMF 170
           P  +  + + L+ + + 
Sbjct: 489 PDGVFDRLTSLQYIWLH 505

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 49/336 (14%), Positives = 105/336 (31%), Gaps = 58/336 (17%)

Query: 42  NVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
             + LSL QN I  +    +     L  L L  N+ +  +    F               
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFL-------------- 97

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS 159
                           LE LD+S   +  +      + +L+ L+L +      +P     
Sbjct: 98  ----FNQ--------DLEYLDVSHNRLQNIS--CCPMASLRHLDLSFND-FDVLPVC--K 140

Query: 160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG--LKYLEVLELSLGSYHALQ 217
           +F  L  L    +   +F +     V       ++ +L+   +K  E   L + +   L 
Sbjct: 141 EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 218 ILLSSNKLKSCIRSLCLDGF---ELEELKIDYTEIVRKRREPF-VFRNLHRVTMVLCH-- 271
           ++   N L S   ++ ++     +L  +K++     R       + R    + + L H  
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 272 ----KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLE 327
                   +    +   ++ L++                E  +          L+ L +E
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNL----------TITERIDREEFTYSETALKSLMIE 310

Query: 328 DLPNLESIYWKPLPFTRLKEMAV--LGCDQLEKLPV 361
            + N   ++ K   ++   EM +  L       + +
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 41  ENVRRLSLMQNQIETVSE-VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97
             V+ L L  N+I ++ + V     L  L +  NQ L+ + DG F  + SL+ + + +
Sbjct: 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHD 506

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 66/294 (22%)

Query: 114 SSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI 172
           +  ++  ++ + + +      +   N+K L+L     L +I    ++ F++L +L +   
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNL--- 65

Query: 173 GYDRFHEAPEDSVLFGGGEVL---------IQELLGLKYLEVLELS--------LGSYHA 215
             +  +E  +          L         +QELL    +E L  +              
Sbjct: 66  SSNVLYETLD----LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 216 LQIL-LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTM-VLCH- 271
            + + L++NK+   +R L       ++ L +   EI           +   +    L + 
Sbjct: 122 KKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYN 179

Query: 272 KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED--- 328
            + DV   V    LK+LDL       ++  +G                 +  ++L +   
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSN----KLAFMGP---------EFQSAAGVTWISLRNNKL 226

Query: 329 ---------LPNLESIY-----WKPLP----FTRLKEMAVLGCDQLEKLPVDSN 364
                      NLE        +        F++ + +  +    ++KL   + 
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 40  WENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97
            +  + + L  N+I  + ++       +  L L  N+   +          +L+ L +  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 98  CGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQ 156
                +  +   +    + L+ LD+S   +  +  E +    +  ++LR    L+ I + 
Sbjct: 179 N---FIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232

Query: 157 LISKFSRLRVL 167
            +     L   
Sbjct: 233 -LRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 37/224 (16%), Positives = 79/224 (35%), Gaps = 38/224 (16%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
           L E  D++    +R L L  N +    E+   P + TL    N  +  ++    Q     
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYV---QELLVGPSIETLHAANNN-ISRVSCSRGQ---GK 122

Query: 91  KVLKMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELP--EELKKLVNLKCLNLRWT 147
           K + ++N    ++  L        S ++ LD+    I  +   E       L+ LNL++ 
Sbjct: 123 KNIYLANN---KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 148 GALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYL---- 203
             +  +  Q+   F++L+ L    +  ++      +           Q   G+ ++    
Sbjct: 180 -FIYDVKGQV--VFAKLKTLD---LSSNKLAFMGPE----------FQSAAGVTWISLRN 223

Query: 204 ---EVLELSLGSYHALQIL-LSSNKLKS-CIRSLCLDGFELEEL 242
               ++E +L     L+   L  N      +R        ++ +
Sbjct: 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 47/341 (13%), Positives = 105/341 (30%), Gaps = 70/341 (20%)

Query: 41  ENVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
              +   +  + ++        +  ++  L L  N  L  I+         L++L +S+ 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68

Query: 99  GQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLI 158
               L   + +  L S+L  LD++   + EL        +++ L+      + R+     
Sbjct: 69  ---VLYETLDLESL-STLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVS---C 116

Query: 159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS--------- 209
           S+    + + +     ++     +                    ++ L+L          
Sbjct: 117 SRGQGKKNIYL---ANNKITMLRDLD------------EGCRSRVQYLDLKLNEIDTVNF 161

Query: 210 ---LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRV 265
                S   L+ L L  N +      +     +L+ L +   ++         F++   V
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTLDLSSNKL---AFMGPEFQSAAGV 216

Query: 266 TMVLCH--KLKDV-TFLVFAPNLKSLDLDG----CDAMEEIISVGKFAETPEMMGHISPF 318
           T +     KL  +   L F+ NL+  DL G    C  + +                 S  
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF---------------FSKN 261

Query: 319 ENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKL 359
           + +Q +  + +  L     +      L       C+ L   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 47/202 (23%), Positives = 70/202 (34%), Gaps = 35/202 (17%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
             +R+ L  N+I  V       C +L  L+L  N  L  I    F  +  L+ L +S+  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91

Query: 100 QGRLKLPVGM-SVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQL 157
           Q R  +       L   L  L +   G+ EL     + L  L+ L L+   AL  +P   
Sbjct: 92  QLR-SVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDT 148

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS---LGSYH 214
                 L  L +     +R    PE +              GL  L+ L L    +   H
Sbjct: 149 FRDLGNLTHLFL---HGNRISSVPERA------------FRGLHSLDRLLLHQNRVAHVH 193

Query: 215 A--------LQIL-LSSNKLKS 227
                    L  L L +N L +
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSA 215

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 44  RRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
           + L L  N ++ + +       +L  LFL  N+ +  + +  F+ + SL  L +      
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN--- 187

Query: 102 RLK-LPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLR 145
           R+  +          L  L +    ++ LP E L  L  L+ L L 
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 38  KGWENVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM 95
           +G  ++ RL L QN++  V          L+TL+L  N  L  +       + +L+ L++
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRL 232

Query: 96  SN 97
           ++
Sbjct: 233 ND 234

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 43/297 (14%), Positives = 97/297 (32%), Gaps = 66/297 (22%)

Query: 112 LGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMF 170
            G+  ++  ++ + + +      +   N+K L+L     L +I    ++ F++L +L + 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNL- 65

Query: 171 AIGYDRFHEAPEDSVLFGGGEVL---------IQELLGLKYLEVLELS--------LGSY 213
               +  +E  +          L         +QELL    +E L  +            
Sbjct: 66  --SSNVLYETLD----LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 214 HALQIL-LSSNKLKSCIRSLCLDGF-ELEELKIDYTEIVRKRREPFVFRNLHRVTM-VLC 270
              + + L++NK+   +R L       ++ L +   EI           +   +    L 
Sbjct: 120 QGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQ 177

Query: 271 H-KLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED- 328
           +  + DV   V    LK+LDL       ++  +G                 +  ++L + 
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSN----KLAFMGP---------EFQSAAGVTWISLRNN 224

Query: 329 -----------LPNLESIY-----WK----PLPFTRLKEMAVLGCDQLEKLPVDSNS 365
                        NLE        +        F++ + +  +    ++KL   +  
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 40/262 (15%), Positives = 81/262 (30%), Gaps = 26/262 (9%)

Query: 41  ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC 98
           +  + + L  N+I  + ++       +  L L  N+   +          +L+ L +   
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 99  GQGRLK-LPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQL 157
               +  +   +    + L+ LD+S   +  +  E +    +  ++LR    L+ I +  
Sbjct: 180 ---FIYDVKGQVVF--AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA- 232

Query: 158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL------IQELLGLKYLEVLELSLG 211
                  + L  F +  + FH             V       +++L G    E    +LG
Sbjct: 233 ---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 212 SYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLC 270
            Y A     L +      I    L   E   L    +E  R   E         +  +  
Sbjct: 290 HYGAYCCEDLPAPFADRLIA---LKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 271 HKLKDVTFLVFA--PNLKSLDL 290
              + V   V        +L+ 
Sbjct: 347 Q-YRTVIDQVTLRKQAKITLEQ 367

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 53/366 (14%), Positives = 120/366 (32%), Gaps = 60/366 (16%)

Query: 42  NVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
             +   +  + ++    S   +  ++  L L  N  L  I+         L++L +S+  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN- 68

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS 159
              L   + +  L S+L  LD++   + EL        +++ L+      + R+     S
Sbjct: 69  --VLYETLDLESL-STLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVS---CS 117

Query: 160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS---------- 209
           +    + + +     ++     +                    ++ L+L           
Sbjct: 118 RGQGKKNIYL---ANNKITMLRDLD------------EGCRSRVQYLDLKLNEIDTVNFA 162

Query: 210 --LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVT 266
               S   L+ L L  N +      +     +L+ L +   ++         F++   VT
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTLDLSSNKL---AFMGPEFQSAAGVT 217

Query: 267 MV-LCH-KLKDV-TFLVFAPNLKSLDLDG----CDAMEEIISVGKFAETPEMMG-HISPF 318
            + L + KL  +   L F+ NL+  DL G    C  + +  S  +  +T           
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 319 ENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRGEED 378
           +N +   +  L +  +   + LP      +  L   +   L    +  +     +  E +
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER----LECERE 333

Query: 379 WWNRLQ 384
              R +
Sbjct: 334 NQARQR 339

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 40/313 (12%), Positives = 86/313 (27%), Gaps = 52/313 (16%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
           L E  D++    +R L L  N +    E+   P + TL    N  +  ++    Q     
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYV---QELLVGPSIETLHAANNN-ISRVSCSRGQ---GK 122

Query: 91  KVLKMSNCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEE--LKKLVNLKCLNLRWT 147
           K + ++N    ++  L        S ++ LD+    I  +           L+ LNL++ 
Sbjct: 123 KNIYLANN---KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 148 GALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLE 207
             +  +  Q+   F++L+ L    +  ++                   E      +  + 
Sbjct: 180 -FIYDVKGQV--VFAKLKTLD---LSSNKLAFMGP-------------EFQSAAGVTWIS 220

Query: 208 LS----------LGSYHALQIL-LSSNKLKS-CIRSLCLDGFELEELKIDYTEIVRKRRE 255
           L           L     L+   L  N      +R        ++ +     + +  + E
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 256 PFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI 315
                         C +     F      LK  +                     +    
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE--------RLECER 332

Query: 316 SPFENLQRLNLED 328
                 + ++   
Sbjct: 333 ENQARQREIDALK 345

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 56/341 (16%), Positives = 110/341 (32%), Gaps = 56/341 (16%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           +V  + L  N I  ++E        L  L ++      +I +  F+ + SL +LK+    
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-- 88

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITE--LPEEL-KKLVNLKCLNLRWTGALIRIPR 155
             +   L  G     ++LE+L ++   +    L     K L +L+ L LR    + +I  
Sbjct: 89  -NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQP 146

Query: 156 QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSY-- 213
                F  +R   +  + +++     E+       +     LL L  + + +++      
Sbjct: 147 ASF--FLNMRRFHVLDLTFNKVKSICEED--LLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 214 ---------HALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLH 263
                     ++  L LS N  K  +     D     +++             F   N  
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 264 RVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQR 323
                    L+       A  +K+ DL         +    F+             +L++
Sbjct: 263 DPDNFTFKGLE-------ASGVKTCDLSKSKIFA--LLKSVFSHFT----------DLEQ 303

Query: 324 LNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSN 364
           L L    N            ++ + A  G   L KL +  N
Sbjct: 304 LTLAQ--N---------EINKIDDNAFWGLTHLLKLNLSQN 333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 41/265 (15%), Positives = 86/265 (32%), Gaps = 68/265 (25%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100
            N  +++  ++ +           + TL       +  I     Q + +L  L++ +   
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTG-VTTIE--GVQYLNNLIGLELKDN-- 73

Query: 101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISK 160
            ++     +  L + +  L++S   +  +   +  L ++K L+L  T    +I    ++ 
Sbjct: 74  -QITDLAPLKNL-TKITELELSGNPLKNV-SAIAGLQSIKTLDLTST----QITD--VTP 124

Query: 161 FSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS---------LG 211
            + L  L++  +  ++                 I  L GL  L+ L +          L 
Sbjct: 125 LAGLSNLQVLYLDLNQITN--------------ISPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 212 SYHALQIL-LSSNKLK--SCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMV 268
           +   L  L    NK+   S + SL      L E+ +   +I                   
Sbjct: 171 NLSKLTTLKADDNKISDISPLASL----PNLIEVHLKNNQI------------------- 207

Query: 269 LCHKLKDVTFLVFAPNLKSLDLDGC 293
                 DV+ L    NL  + L   
Sbjct: 208 -----SDVSPLANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
           + +   +K    +  L L  N ++ VS +     + TL L   Q  ++        + +L
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP---LAGLSNL 131

Query: 91  KVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
           +VL +      ++     ++ L ++L+ L I    +++L   L  L  L  L  
Sbjct: 132 QVLYLDLN---QITNISPLAGL-TNLQYLSIGNAQVSDL-TPLANLSKLTTLKA 180

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 42/210 (20%)

Query: 30  GLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPS 89
           G+     V+   N+  L L  NQI  ++ +     +  L L  N  L+ +      L  S
Sbjct: 52  GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNV-SAIAGL-QS 108

Query: 90  LKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGA 149
           +K L +++    ++     ++ L S+L++L +    IT +   L  L NL+ L++     
Sbjct: 109 IKTLDLTST---QITDVTPLAGL-SNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNA-- 161

Query: 150 LIRIPRQL--ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLE 207
                 Q+  ++  + L  L       ++  +              I  L  L  L  + 
Sbjct: 162 ------QVSDLTPLANLSKLTTLKADDNKISD--------------ISPLASLPNLIEVH 201

Query: 208 LS---------LGSYHALQIL-LSSNKLKS 227
           L          L +   L I+ L++  + +
Sbjct: 202 LKNNQISDVSPLANTSNLFIVTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ--ELEMIADGFFQLMP 88
           +     + G  N++ LS+   Q+  ++ +     L TL  D N+  ++  +A      +P
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS-----LP 195

Query: 89  SLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
           +L  + + N     +     ++   S+L ++ ++   IT  P       NL   N+
Sbjct: 196 NLIEVHLKNNQISDVS---PLANT-SNLFIVTLTNQTITNQPVFYNN--NLVVPNV 245

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 36/213 (16%), Positives = 78/213 (36%), Gaps = 21/213 (9%)

Query: 42  NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           + + L L++  + T+        P++  +++  +  L+ +    F  +  +  +++ N  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 100 QGRLK-LPVGM-SVLGSSLELLDISCTGITELPEE--LKKLVNLKCLNLRWTGALIRIPR 155
              L  +       L   L+ L I  TG+   P+   +        L +     +  IP 
Sbjct: 92  N--LTYIDPDALKEL-PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 156 QLISKF-SRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSL--GS 212
                  +    L++     + F      +  F G ++    L   KYL V++     G 
Sbjct: 149 NAFQGLCNETLTLKL---YNNGFTSVQGYA--FNGTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 213 YHALQIL-LSSNKLKSCIRSLCLDGFELEELKI 244
           Y    +L +S   + + + S  L+   L+EL  
Sbjct: 204 YSGPSLLDVSQTSVTA-LPSKGLEH--LKELIA 233

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
             + L+L  N IE +S +    +L  L L  N  ++ I +    +  +L+ L +S     
Sbjct: 49  ACKHLALSTNNIEKISSLSGMENLRILSLGRNL-IKKI-ENLDAVADTLEELWISYNQIA 106

Query: 102 RLKLPVGMSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNL 144
            L    G+  L  +L +L +S   IT   E  +L  L  L+ L L
Sbjct: 107 SLS---GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 12/135 (8%)

Query: 41  ENVRRLSLMQNQIETVS--EVPTCPHLLTLFLDFNQ---ELEMIADGFFQLMPSLKVLKM 95
             ++ LS+ Q      S  +V   P L TL L  N    E  +I+       P+L+VL +
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 96  SNCGQGRL-KLPVGMSVLGSSLELLDISCTGITELPEELK--KLVNLKCLNLRWTGALIR 152
            N G      +   ++     L+ LD+S   + +            L  LNL +TG L +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQ 267

Query: 153 IPRQLISKFSRLRVL 167
           +P+ L    ++L VL
Sbjct: 268 VPKGL---PAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 30  GLKEAPDVKGWENVRRLSLMQNQIETVSEVP-----TCPHLLTLFLDFNQELEMIADGFF 84
           GL  A     +  ++ L+L    +ET S V          L  L L  N   +       
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 85  QLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
                L  L +S        L      L + L +LD+S   +   P    +L  +  L+L
Sbjct: 250 DWPSQLNSLNLSFT-----GLKQVPKGLPAKLSVLDLSYNRLDRNPSPD-ELPQVGNLSL 303

Query: 145 R 145
           +
Sbjct: 304 K 304

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 39/219 (17%), Positives = 69/219 (31%), Gaps = 20/219 (9%)

Query: 87  MPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRW 146
           +  L+ L + N        P  +   G  L +L++           L +L       L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 147 ----TGALIRIPRQLISKFSRLRVLRMFAIGYDRF-HEAPEDSVLFGGGEVLIQEL---- 197
                   +    + +  F  L  L    +  +    E    S L       +Q L    
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLD---LSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 198 LGLKYLE-VLELSLGSYHALQIL-LSSNKLKSCI-RSLCLDGFELEELKIDYTEIVRKRR 254
            G++    V      +   LQ L LS N L+       C    +L  L + +T +  K+ 
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQV 268

Query: 255 EPFVFRNLHRVTMVLCH-KLKDVTFLVFAPNLKSLDLDG 292
              +   L    + L + +L         P + +L L G
Sbjct: 269 PKGLPAKLS--VLDLSYNRLDRNPSPDELPQVGNLSLKG 305

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 5e-08
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 40  WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           + +VR L L    +  +  +     +  L L  N+ L  +      L   L+VL+ S+  
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAAL-RCLEVLQASDN- 496

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNLR 145
              L+   G++ L   L+ L +    + +      L     L  LNL+
Sbjct: 497 --ALENVDGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 38/262 (14%), Positives = 77/262 (29%), Gaps = 72/262 (27%)

Query: 46  LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL 105
              +   I+ +         +   L      + +       + S+  +  +N     ++ 
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQ- 62

Query: 106 PVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLR 165
             G+  L  ++  L ++   +T++ + L  L NL  L L       ++    +S    L+
Sbjct: 63  --GIQYL-PNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDEN----KVKD--LSSLKDLK 112

Query: 166 VLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS---------LGSYHAL 216
            L+  ++ ++   +              I  L+ L  LE L L          L     L
Sbjct: 113 KLKSLSLEHNGISD--------------INGLVHLPQLESLYLGNNKITDITVLSRLTKL 158

Query: 217 QIL-LSSNKLKSCIRSLCLDGFE----LEELKIDYTEIVRKRREPFVFRNLHRVTMVLCH 271
             L L  N++        +        L+ L +    I                      
Sbjct: 159 DTLSLEDNQISD------IVPLAGLTKLQNLYLSKNHI---------------------- 190

Query: 272 KLKDVTFLVFAPNLKSLDLDGC 293
              D+  L    NL  L+L   
Sbjct: 191 --SDLRALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 31  LKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
           + +A       ++ ++    + I++V  +   P++  LFL+ N+ L  I       + +L
Sbjct: 36  VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP--LANLKNL 92

Query: 91  KVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
             L +      ++K    +  L   L+ L +   GI+++   L  L  L+ L L
Sbjct: 93  GWLFLDEN---KVKDLSSLKDL-KKLKSLSLEHNGISDI-NGLVHLPQLESLYL 141

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
            ++ LSL  N I  ++ +   P L +L+L  N+ +  I       +  L  L + +    
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDN--- 166

Query: 102 RLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
           ++   V ++ L + L+ L +S   I++L   L  L NL  L L
Sbjct: 167 QISDIVPLAGL-TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 12/124 (9%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ--ELEMIADGFFQLMPSLKVLKMSNCG 99
            +  LSL  NQI  +  +     L  L+L  N   +L  +A      + +L VL++ +  
Sbjct: 157 KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG-----LKNLDVLELFSQ- 210

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS 159
           +   K     S L     + +   + +T  PE +    + +  N++W   L     ++  
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH--LPEFTNEVSF 266

Query: 160 KFSR 163
            F +
Sbjct: 267 IFYQ 270

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 48/356 (13%), Positives = 100/356 (28%), Gaps = 111/356 (31%)

Query: 9   AIWITCEIEKEKR-----NFLVRA--GAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPT 61
             ++ C  +   R     N    +     +++      W+N + ++   +++ T+ E   
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNC--DKLTTIIES-- 361

Query: 62  CPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI 121
                   L+  +  E      F     L V   S        +P    +L     L+  
Sbjct: 362 -------SLNVLEPAEY--RKMFD---RLSVFPPS------AHIP--TILL----SLI-- 395

Query: 122 SCTGITELPEE-LKKLVNLKCLNLRWTGALIRIP-----------------RQLISKFSR 163
               I       + KL     +  +   + I IP                 R ++  ++ 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 164 LRVLRMFAIGYDRFHEAP--EDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLS 221
            +        +D     P   D   +              ++         +H   I   
Sbjct: 456 PK-------TFDSDDLIPPYLDQYFY-------------SHI--------GHHLKNIEHP 487

Query: 222 SNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVF 281
             +  +  R + LD F   E KI +                      + + L+ + F   
Sbjct: 488 --ERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGS------------ILNTLQQLKFY-- 530

Query: 282 APNLKSLDLDGCDAMEEII-SVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIY 336
               K    D     E ++ ++  F    E     S + +L R+ L    + E+I+
Sbjct: 531 ----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA-ED-EAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 45/315 (14%), Positives = 89/315 (28%), Gaps = 117/315 (37%)

Query: 120 DISCTGITELP------EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIG 173
           +  C  + ++P      EE+  ++  K                     S    L      
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSK------------------DAVSGTLRL------ 67

Query: 174 YDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLC 233
           +       E+ V     +  ++E+L + Y                      L S I++  
Sbjct: 68  FWTLLSKQEEMV-----QKFVEEVLRINY--------------------KFLMSPIKTEQ 102

Query: 234 LDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTF-LVFAPNL------- 285
                +  + I+  + +    + F   N+ R+      KL+     L  A N+       
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLG 160

Query: 286 --KS-LDLDGCDAME-------EI--ISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE 333
             K+ + LD C + +       +I  +++        ++      E LQ+L  +  PN  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDPNWT 214

Query: 334 SIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERK---FVIRGEE-------DWWNRL 383
           S                   D    + +  +S +         +  E       +  N  
Sbjct: 215 S-----------------RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 384 QWEDEATQIAFR-SC 397
            W       AF  SC
Sbjct: 258 AWN------AFNLSC 266

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ--ELEMIADGFFQLMPSLKVLKMSNC 98
            ++  ++L    +  ++ +    ++  L ++         I+      + +L+ L++   
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISG-----LSNLERLRIMGK 98

Query: 99  GQGRLKLPVGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQL 157
                K+P  +S L +SL LLDIS +   +    ++  L  +  ++L + GA+  I    
Sbjct: 99  DVTSDKIP-NLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MP 154

Query: 158 ISKFSRLRVL 167
           +     L+ L
Sbjct: 155 LKTLPELKSL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
           N++ L++        + +    +L  L +               L  SL +L +S+    
Sbjct: 67  NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHD 125

Query: 102 RLKLPVGMSVLGSSLELLDIS-CTGITELPEELKKLVNLKCLNL 144
              L   ++ L   +  +D+S    IT++   LK L  LK LN+
Sbjct: 126 DSILT-KINTL-PKVNSIDLSYNGAITDI-MPLKTLPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 42  NVRRLSLMQNQI--ETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           N+ RL +M   +  + +  +     L  L +  +   +         +P +  + +S  G
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNG 147

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
              +   + +  L   L+ L+I   G+ +    ++    L  L  
Sbjct: 148 A--ITDIMPLKTL-PELKSLNIQFDGVHDY-RGIEDFPKLNQLYA 188

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 43/267 (16%), Positives = 85/267 (31%), Gaps = 47/267 (17%)

Query: 62  CPHLLTLFLDF----NQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLE 117
              L  + L      +  LE+IA  F     + KVL +S+C          ++    +L+
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSF----KNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159

Query: 118 LLDISCTGITE-----LPEELKKLVNLKCLNLRWTGALIRIP--RQLISKFSRLRVLRMF 170
            LD+  + + +     L        +L  LN+    + +      +L+++   L+ L++ 
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL- 218

Query: 171 AIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIR 230
                        +V       L+Q    L+ L     +      +   LS   L  C  
Sbjct: 219 -----------NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA-LSGCKE 266

Query: 231 SLCLDGFE----------------LEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK 274
             CL GF                 L  L + Y  +        + +      + +   ++
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE 326

Query: 275 DVTFLVFA---PNLKSLDLDGCDAMEE 298
           D    V A    +L+ L +   +    
Sbjct: 327 DAGLEVLASTCKDLRELRVFPSEPFVM 353

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 42/334 (12%), Positives = 101/334 (30%), Gaps = 73/334 (21%)

Query: 42  NVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQ--ELEMIADGFFQL-----MPSLKV 92
           ++  + +      T   + +   P +  + +  N+    E + D +  L        +++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 93  LKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRW---TGA 149
           + +         +   +  +   L +L+     +          + L  LNL +   T  
Sbjct: 310 IYIGYNNLKTFPVETSLQKM-KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE- 367

Query: 150 LIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS 209
              IP        ++  L      +++    P              +   +  +  ++ S
Sbjct: 368 ---IPANFCGFTEQVENLSF---AHNKLKYIPNIF-----------DAKSVSVMSAIDFS 410

Query: 210 ------------------LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDY---T 247
                                   +  + LS+N++    + L   G  L  + +     T
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 248 EIVR--KRREPFVFRNLHRVTMV-LCH-KLKDV---TFLVFAPNLKSLDLDGCDAMEEII 300
           EI +   + E   F+N + +T + L   KL  +         P L  +DL          
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN------- 523

Query: 301 SVGKFAETPEMMGHISPFENLQRLNLEDLPNLES 334
               F++ P    + S    L+   + +  + + 
Sbjct: 524 ---SFSKFPTQPLNSS---TLKGFGIRNQRDAQG 551

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 38/229 (16%), Positives = 61/229 (26%), Gaps = 52/229 (22%)

Query: 35  PDVKGWENVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQ-------ELEMIADGFFQ 85
           P      NV  ++L  NQI         T   L ++ L  N         L+   + F  
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 86  LMPSLKVLKMSNCGQGRL-KLPVGMSVLG-SSLELLDISCTGITELPEELKKLVNLKCLN 143
               L  + +      +L KL           L  +D+S    ++ P +      LK   
Sbjct: 487 T-YLLTSIDLRFN---KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542

Query: 144 LRWTGALIR------IPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQEL 197
           +R              P   I+    L  L+   IG +   +  E               
Sbjct: 543 IRNQRDAQGNRTLREWPEG-ITLCPSLTQLQ---IGSNDIRKVNEKI------------- 585

Query: 198 LGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDY 246
                + VL++              N   S   S      E     + Y
Sbjct: 586 --TPNISVLDIK------------DNPNISIDLSYVCPYIEAGMYMLFY 620

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 19/220 (8%), Positives = 55/220 (25%), Gaps = 43/220 (19%)

Query: 42  NVRRLSLMQNQIETV------SEVPTCPHLLTLFLDFNQELEMIADGFFQL-MPSLKVLK 94
            +  L+L  +  +          +                 +   D   +     L    
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 95  MSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIP 154
           +++    +  +      +      +      IT + + + +L  L+   +      +   
Sbjct: 166 INSD-PQQKSIKKSSR-ITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMG-NSPFVAEN 222

Query: 155 RQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS----- 209
                +       + +                    +    +   LK L  +E+      
Sbjct: 223 ICEAWENENSEYAQQY--------------------KTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 210 ------LGSYHALQIL-LSSNKLKSCIRSLCLDGFELEEL 242
                 L +   +Q++ ++ N+  S    L  D   L + 
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALADA 301

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 13/106 (12%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQ--ELEMIADGFFQLMPSLKVLKMSNCG 99
            V+  +   + I++++ +    +L  L L  NQ  +L  + D     +  L+ L ++   
Sbjct: 42  GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKD-----LTKLEELSVNRN- 95

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLR 145
             RLK   G+      L  L +    + +  + L  L NL+ L++R
Sbjct: 96  --RLKNLNGIPSA--CLSRLFLDNNELRDT-DSLIHLKNLEILSIR 136

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 39/201 (19%)

Query: 37  VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMS 96
             G  N  + +L +  +  +        +     D +  ++ +A    Q   +LK L +S
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN-IQSLAG--MQFFTNLKELHLS 71

Query: 97  NCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQ 156
           +     L     +  L + LE L ++   +  L   +     L  L L        +   
Sbjct: 72  HNQISDLS---PLKDL-TKLEELSVNRNRLKNL-NGIPSA-CLSRLFLDNN----ELRD- 120

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS------- 209
                  L+ L + +I  ++                 I  L  L  LEVL+L        
Sbjct: 121 -TDSLIHLKNLEILSIRNNKLKS--------------IVMLGFLSKLEVLDLHGNEITNT 165

Query: 210 --LGSYHALQIL-LSSNKLKS 227
             L     +  + L+  K  +
Sbjct: 166 GGLTRLKKVNWIDLTGQKCVN 186

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 48/289 (16%), Positives = 80/289 (27%), Gaps = 116/289 (40%)

Query: 48  LMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV 107
                I  V   P   + +   L        + D     + S K L              
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQS----VTD-----LVSQKELS------------- 41

Query: 108 GMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVL 167
                   ++  +   + I  L   ++   NLK L+L             IS        
Sbjct: 42  -------GVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQ---------ISD------- 77

Query: 168 RMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKS 227
                                     +  L  L  LE L ++             N+LK+
Sbjct: 78  --------------------------LSPLKDLTKLEELSVN------------RNRLKN 99

Query: 228 CIRSLCLDGFE---LEELKIDYTEIVRKRREPFVFRNLHRVTMVLCH--KLKDVTFLVFA 282
                 L+G     L  L +D  E+    R+     +L  + ++     KLK +  L F 
Sbjct: 100 ------LNGIPSACLSRLFLDNNEL----RDTDSLIHLKNLEILSIRNNKLKSIVMLGFL 149

Query: 283 PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPN 331
             L+ LDL G +     I+            +      L+++N  DL  
Sbjct: 150 SKLEVLDLHGNE-----IT------------NTGGLTRLKKVNWIDLTG 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 39  GWENVRRLSLMQNQIETVSEVP--TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMS 96
           G  ++++L  ++  + ++   P      L  L +  N         +F  + +L+ L +S
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 97  NCGQGRLK-LPVGM----SVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALI 151
           +    +++ +          +      LD+S   +  +     K + LK L L     L 
Sbjct: 158 SN---KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLK 213

Query: 152 RIPRQLISKFSRLRVLRMF 170
            +P  +  + + L+ + + 
Sbjct: 214 SVPDGIFDRLTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 47/233 (20%), Positives = 79/233 (33%), Gaps = 38/233 (16%)

Query: 42  NVRRLSLMQNQIETVSEVPT----CPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97
           + + L L  N +  +          P L  L L   + ++ I DG +Q +  L  L ++ 
Sbjct: 29  STKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG 85

Query: 98  CGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEEL-KKLVNLKCLNLRWTGALIRIPR 155
                ++ L +G     SSL+ L    T +  L       L  LK LN+     +     
Sbjct: 86  ---NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKL 141

Query: 156 QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA 215
                FS L  L    +  ++                    L  L  + +L LSL     
Sbjct: 142 P--EYFSNLTNLEHLDLSSNKIQSIYCTD------------LRVLHQMPLLNLSL----- 182

Query: 216 LQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMV 268
               LS N +   I+        L+EL +D  ++  K     +F  L  +  +
Sbjct: 183 ---DLSLNPMNF-IQPGAFKEIRLKELALDTNQL--KSVPDGIFDRLTSLQKI 229

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 48/207 (23%), Positives = 81/207 (39%), Gaps = 46/207 (22%)

Query: 42  NVRRLSLMQNQIETVSEVPT-----CPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKM 95
            +  L+L  N      E+P         L  L L FN+     + +    L  SL  L +
Sbjct: 319 LLESLALSSNNFS--GELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDL 375

Query: 96  SNCG-QGRLKLPVGMSVLGSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRW---TGAL 150
           S+    G +   +  +   ++L+ L +   G T ++P  L     L  L+L +   +G  
Sbjct: 376 SSNNFSGPILPNLCQNPK-NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-- 432

Query: 151 IRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLEL-- 208
             IP   +   S+LR L+++    +              GE+  QEL+ +K LE L L  
Sbjct: 433 -TIP-SSLGSLSKLRDLKLW---LNMLE-----------GEIP-QELMYVKTLETLILDF 475

Query: 209 ---------SLGSYHALQIL-LSSNKL 225
                     L +   L  + LS+N+L
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 42  NVRRLSLMQNQIETVSEVPT----CPHLLTLFLDFNQELEMIADGFF--QLMPSLKVLKM 95
            ++ L +  N++    +       C  L  L +  NQ       G      + SL+ L +
Sbjct: 224 ALQHLDISGNKLS--GDFSRAISTCTELKLLNISSNQ-FV----GPIPPLPLKSLQYLSL 276

Query: 96  SNCG-QGRLKLPVGMSVLGSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRW---TGAL 150
           +     G  ++P  +S    +L  LD+S       +P        L+ L L     +G  
Sbjct: 277 AENKFTG--EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-- 332

Query: 151 IRIPRQLISKFSRLRVL 167
             +P   + K   L+VL
Sbjct: 333 -ELPMDTLLKMRGLKVL 348

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 40/214 (18%)

Query: 42  NVRRLSLMQNQIETVSEVPTC----PHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMS 96
            +  L L  N +     +P+       L  L L  N  LE  I      +  +L+ L + 
Sbjct: 419 ELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYV-KTLETLILD 474

Query: 97  NCG-QGRLKLPVGMSVLGSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRW---TGALI 151
                G  ++P G+S   ++L  + +S   +T E+P+ + +L NL  L L     +G   
Sbjct: 475 FNDLTG--EIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG--- 528

Query: 152 RIPRQLISKFSRLRVLRM-----------------FAIGYDRFH-EAPEDSVLFGGGEVL 193
            IP + +     L  L +                   I  +    +        G  +  
Sbjct: 529 NIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 194 IQELLGLKYLEVLELSLGSYHALQIL-LSSNKLK 226
                 L++  +    L          ++S    
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 35/179 (19%)

Query: 70  LDFNQELEMIADGFFQLMPSLKVLKMSNCG-QGRLKLPVGMSVLG--SSLELLDISCTGI 126
              N     ++     L   L+ L +SN    G +      S     +SL  LD+S   +
Sbjct: 60  KPLNVGFSAVSSSLLSL-TGLESLFLSNSHINGSV------SGFKCSASLTSLDLSRNSL 112

Query: 127 T-ELPE--ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPED 183
           +  +     L     LK LN+               K + L VL +              
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS------------A 160

Query: 184 SVLFGGGEVLIQELLGLKYLEVLELS---------LGSYHALQIL-LSSNKLKSCIRSL 232
           + + G   V      G   L+ L +S         +     L+ L +SSN   + I  L
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 45/212 (21%)

Query: 35  PDVKGWENVRRLSLMQNQ----IETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSL 90
              K   ++  L L +N     + T++ + +C  L  L +  N             + SL
Sbjct: 94  SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153

Query: 91  KVLKMSNCG-QGRLKLPVGMSVLG--SSLELLDISCTGIT-ELPEELKKLVNLKCLNLRW 146
           +VL +S     G     VG  +      L+ L IS   I+ ++   + + VNL+ L++  
Sbjct: 154 EVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209

Query: 147 ---TGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYL 203
              +     IP   +   S L+ L    I  ++             G+   + +     L
Sbjct: 210 NNFST---GIP--FLGDCSALQHLD---ISGNKLS-----------GDFS-RAISTCTEL 249

Query: 204 EVLELS---------LGSYHALQIL-LSSNKL 225
           ++L +S              +LQ L L+ NK 
Sbjct: 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 42  NVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           N+  L L  N +  +S       P+L  L L  N  L  + +  F  + +L+VL + N  
Sbjct: 65  NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN- 122

Query: 100 QGRLK-LPVGM-SVLGSSLELLDISCTGITELPEE----LKKLVNLKCLNLRWTGALIRI 153
              +  +       + + L+ L +S   I+  P E      KL  L  L+L  +  L ++
Sbjct: 123 --HIVVVDRNAFEDM-AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS-SNKLKKL 178

Query: 154 PRQLISKFSRLRVL 167
           P   + K       
Sbjct: 179 PLTDLQKLPAWVKN 192

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 9e-07
 Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 50  QNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-LPVG 108
              ++++  +P   +L  L+++  Q L+ +     + +  L+ L +       L+ +   
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS---GLRFVAPD 74

Query: 109 MSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
                  L  L++S   +  L  +  + ++L+ L L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 59/362 (16%), Positives = 101/362 (27%), Gaps = 96/362 (26%)

Query: 40  WENVRRLSLMQNQIETVSEVPTC--PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97
           W         + +   V ++  C       L +  +  L  + D        +  L + +
Sbjct: 15  WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESG-LTTLPDCLPA---HITTLVIPD 70

Query: 98  CGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQ 156
                L  LP         L  L++S   +T LP     L+ L   +   T     +P  
Sbjct: 71  N---NLTSLPALPP----ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT----HLPAL 119

Query: 157 LISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA- 215
                S L  L    I  ++    P                 GL+ L V +  L S  A 
Sbjct: 120 P----SGLCKLW---IFGNQLTSLPV-------------LPPGLQELSVSDNQLASLPAL 159

Query: 216 ---LQIL-LSSNKLKS------CIRSLCLDG----------FELEELKIDYTEIVRKRRE 255
              L  L   +N+L S       ++ L +             EL +L      +      
Sbjct: 160 PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL 219

Query: 256 PFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI 315
           P   + L     V  ++L  +  L     LK L + G           +    P +    
Sbjct: 220 PSGLKELI----VSGNRLTSLPVLP--SELKELMVSGN----------RLTSLPMLPS-- 261

Query: 316 SPFENLQRLNLED------------LPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDS 363
                L  L++              L +  ++    L    L E  +    ++   P  S
Sbjct: 262 ----GLLSLSVYRNQLTRLPESLIHLSSETTVN---LEGNPLSERTLQALREITSAPGYS 314

Query: 364 NS 365
             
Sbjct: 315 GP 316

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
            + +L+L + ++  +    T P L TL L  NQ L+ +      L P+L VL +S     
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTL-PALTVLDVSFN--- 110

Query: 102 RL-KLPVGMSVLGSSLELLDISCTGITELPEEL-KKLVNLKCLNLRWTGALIRIPRQLIS 159
           RL  LP+G       L+ L +    +  LP  L      L+ L+L     L  +P  L++
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLN 169

Query: 160 KFSRLRVLRM 169
               L  L +
Sbjct: 170 GLENLDTLLL 179

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 12/132 (9%)

Query: 42  NVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           +   L L +N + T S   +     L  L LD  + L  +       +P L  L +S+  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKL--QVDGTLPVLGTLDLSHN- 87

Query: 100 QGRLK-LPVGMSVLGSSLELLDISCTGITELPEEL-KKLVNLKCLNLRWTGALIRIPRQL 157
             +L+ LP+    L  +L +LD+S   +T LP    + L  L+ L L+    L  +P  L
Sbjct: 88  --QLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGL 143

Query: 158 ISKFSRLRVLRM 169
           ++   +L  L +
Sbjct: 144 LTPTPKLEKLSL 155

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 41/194 (21%)

Query: 40  WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           WE        +N+  ++ +         L L+    L  + D      P + VL+++   
Sbjct: 36  WEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNLP---PQITVLEITQN- 90

Query: 100 QGRL-KLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLI 158
              L  LP       +SLE LD     ++ LPE    L +L   N +    L  +P    
Sbjct: 91  --ALISLPELP----ASLEYLDACDNRLSTLPELPASLKHLDVDNNQ----LTMLPELP- 139

Query: 159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSY----H 214
              + L  +       ++    PE                 L+ L V    L        
Sbjct: 140 ---ALLEYIN---ADNNQLTMLPE-------------LPTSLEVLSVRNNQLTFLPELPE 180

Query: 215 ALQIL-LSSNKLKS 227
           +L+ L +S+N L+S
Sbjct: 181 SLEALDVSTNLLES 194

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 41  ENVRRLSLMQNQIETVSEVPT----CPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMS 96
           E +  + L QN I+ +   P        L  + L  NQ +  +A   FQ + SL  L + 
Sbjct: 32  ETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLY 88

Query: 97  NCGQGRLK-LPVGMSVLGSSLELLDISCTGITELPEEL-KKLVNLKCLNLRWTGALIRIP 154
                ++  LP  +     SL+LL ++   I  L  +  + L NL  L+L     L  I 
Sbjct: 89  GN---KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY-DNKLQTIA 144

Query: 155 RQLISKFSRLRVLRMF 170
           +   S    ++ + + 
Sbjct: 145 KGTFSPLRAIQTMHLA 160

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 25/104 (24%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100
           E +  LS +   + +++ +P    L  L L  N+ +    +   +  P+L  L +S    
Sbjct: 42  EELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGN-- 98

Query: 101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNL 144
            ++K            +L  I         E LKKL NLK L+L
Sbjct: 99  -KIK------------DLSTI---------EPLKKLENLKSLDL 120

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 29/107 (27%)

Query: 41  ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ 100
            N+  LSL+   + +VS +P  P L  L L  N+ +    D   + +P+L  L +S    
Sbjct: 49  VNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-- 105

Query: 101 GRLKLPVGMSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNLR 145
                                    + ++     LKKL  LK L+L 
Sbjct: 106 ------------------------KLKDISTLEPLKKLECLKSLDLF 128

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 44/272 (16%), Positives = 83/272 (30%), Gaps = 48/272 (17%)

Query: 59  VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLG-SSLE 117
              C  L+++ +   + LE++  GFF+   +L+     +  +        M+++    L 
Sbjct: 216 ARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 118 LLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF 177
            L +S  G  E+P        ++ L+L +          LI K   L VL          
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-------- 325

Query: 178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF 237
                + +   G EVL Q     K L+ L +  G+             +  + +L     
Sbjct: 326 ----RNVIGDRGLEVLAQ---YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 238 ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFA---PNLKSLDLDGCD 294
           ELE + +                            + + +         NL    L   D
Sbjct: 379 ELEYMAVY------------------------VSDITNESLESIGTYLKNLCDFRLVLLD 414

Query: 295 AMEEIISVGKFAETPEMMGHISPFENLQRLNL 326
             E I  +        +   +   + L+R   
Sbjct: 415 REERITDLPLDN---GVRSLLIGCKKLRRFAF 443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 29/105 (27%)

Query: 42  NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG 101
               +    N+I  +   P    L TL ++ N+ +  I +G  Q +P L  L ++N    
Sbjct: 43  QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN--- 98

Query: 102 RLKLPVGMSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNL 144
                                   + EL +   L  L +L  L +
Sbjct: 99  -----------------------SLVELGDLDPLASLKSLTYLCI 120

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.3 bits (93), Expect = 7e-04
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 20/146 (13%)

Query: 21  RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQI--ETVSEVPT--CPHLLTLFLDFNQEL 76
            N  ++    L      K   N++ L ++   +    V ++     P+L  L L    E 
Sbjct: 175 NNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 77  EMIADGFFQL--------MPSLKVLKMSNCG-QGRLKLPVGMSVLGSSLELLDISCTGIT 127
                              P+LK L + +   Q  +      S +   LE +DIS   +T
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292

Query: 128 -----ELPEELKKLVNLKCLNLRWTG 148
                 L + + K+ +LK +N+++  
Sbjct: 293 DEGARLLLDHVDKIKHLKFINMKYNY 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	402
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.66
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.65
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.63
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.62
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.62
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.58
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.38
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.29
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.21
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.13
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.01
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.01
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.74
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.72
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.63
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.63
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.59
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.24
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.14
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.38

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.5e-25  Score=210.52  Aligned_cols=275  Identities=15%  Similarity=0.158  Sum_probs=155.2

Q ss_pred             cCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccccc
Q 045968           38 KGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLE  117 (402)
Q Consensus        38 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~  117 (402)
                      ..+++++.|++.++.+..++....+++|++|++++| .+.+++.  +..+++|++|++++|  .++.++ .+..+. +|+
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n--~i~~~~-~~~~l~-~L~  113 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTN--KITDIS-ALQNLT-NLR  113 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS--CCCCCG-GGTTCT-TCS
T ss_pred             hhcccccEEEEeCCccccchhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCC--cccCch-HHcCCC-cCC
Confidence            344555666666655555555555566666666655 5555444  555566666666665  555543 344455 566


Q ss_pred             EEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhh
Q 045968          118 LLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQEL  197 (402)
Q Consensus       118 ~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (402)
                      +|++++|.+..++. +..+++|++|++++|.....++.  +..+++|++|++.+|.....                 ..+
T Consensus       114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------------~~~  173 (347)
T 4fmz_A          114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------------TPI  173 (347)
T ss_dssp             EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GGG
T ss_pred             EEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------------hhh
Confidence            66666655555544 55555666666655444444433  55555666665555554321                 113


Q ss_pred             hcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc------------eeeeEeccccccccCCCCccccccccEE
Q 045968          198 LGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF------------ELEELKIDYTEIVRKRREPFVFRNLHRV  265 (402)
Q Consensus       198 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------~L~~L~i~~~~~~~~~~~~~~~~~L~~L  265 (402)
                      ..+++|+.|+++++....+..    ....+.|+.+.++++            +|++|+++++......+.. .+++|+.|
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~l~~L~~L  248 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLA-NLSQLTWL  248 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGT-TCTTCCEE
T ss_pred             ccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchh-cCCCCCEE
Confidence            344445555544333322221    112234444444443            5666666666554444434 67888888


Q ss_pred             ecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCc
Q 045968          266 TMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRL  345 (402)
Q Consensus       266 ~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L  345 (402)
                      ++++| .++.++.+..+++|++|++++|.. +++             ..+..+++|+.|++++|.--...+.....+++|
T Consensus       249 ~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          249 EIGTN-QISDINAVKDLTKLKMLNVGSNQI-SDI-------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             ECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CCC-------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             ECCCC-ccCCChhHhcCCCcCEEEccCCcc-CCC-------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence            88887 677777777788888888888643 222             245677888888888764333333334457888


Q ss_pred             cEEEecCCCCCCCCC
Q 045968          346 KEMAVLGCDQLEKLP  360 (402)
Q Consensus       346 ~~L~i~~c~~L~~lp  360 (402)
                      +.|++++|+ ++.++
T Consensus       314 ~~L~L~~n~-l~~~~  327 (347)
T 4fmz_A          314 TTLFLSQNH-ITDIR  327 (347)
T ss_dssp             SEEECCSSS-CCCCG
T ss_pred             CEEEccCCc-ccccc
Confidence            888888775 56554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=3.2e-25  Score=209.78  Aligned_cols=289  Identities=18%  Similarity=0.178  Sum_probs=236.3

Q ss_pred             ccCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968           19 EKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~   98 (402)
                      ++...+.+.+..+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..++.  +..+++|++|++++|
T Consensus        44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNED  120 (347)
T ss_dssp             TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTS
T ss_pred             ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCC
Confidence            3456777888888888889999999999999999999888899999999999999 7777764  899999999999999


Q ss_pred             CccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccc
Q 045968           99 GQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH  178 (402)
Q Consensus        99 ~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  178 (402)
                        .+..++. +..+. +|++|++++|.....+..+..+++|++|++.+| .+..++.  +..+++|++|++.+|.+..  
T Consensus       121 --~i~~~~~-~~~l~-~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~--  191 (347)
T 4fmz_A          121 --NISDISP-LANLT-KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED--  191 (347)
T ss_dssp             --CCCCCGG-GTTCT-TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC--
T ss_pred             --cccCchh-hccCC-ceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc--
Confidence              8888866 77788 999999999955444455899999999999994 6777765  8899999999999998753  


Q ss_pred             cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc------------eeeeEeccc
Q 045968          179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF------------ELEELKIDY  246 (402)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------~L~~L~i~~  246 (402)
                                     +..+..+++|+.+.++.+.......    ...++.|+.|.+++|            +|++|++++
T Consensus       192 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          192 ---------------ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGT  252 (347)
T ss_dssp             ---------------CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             ---------------cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCC
Confidence                           1227788899999998766554433    344568999999888            788999988


Q ss_pred             cccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeec
Q 045968          247 TEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNL  326 (402)
Q Consensus       247 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  326 (402)
                      +......... .+++|+.|++++| .++.++.+..+++|++|++++|......+            ..+..+++|+.|++
T Consensus       253 n~l~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          253 NQISDINAVK-DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDM------------EVIGGLTNLTTLFL  318 (347)
T ss_dssp             SCCCCCGGGT-TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGH------------HHHHTCTTCSEEEC
T ss_pred             CccCCChhHh-cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcCh------------hHhhccccCCEEEc
Confidence            8775543334 7899999999999 88888889999999999999986543332            25677999999999


Q ss_pred             CccccccccccCccCCCCccEEEecCCC
Q 045968          327 EDLPNLESIYWKPLPFTRLKEMAVLGCD  354 (402)
Q Consensus       327 ~~c~~l~~i~~~~~~~~~L~~L~i~~c~  354 (402)
                      ++|+ +..++. ...+++|++|++++|+
T Consensus       319 ~~n~-l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          319 SQNH-ITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred             cCCc-cccccC-hhhhhccceeehhhhc
Confidence            9986 555544 5568999999998875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=4.6e-23  Score=202.98  Aligned_cols=240  Identities=19%  Similarity=0.219  Sum_probs=147.7

Q ss_pred             cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ....+...+.++..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..+++  +..+++|++|++++| 
T Consensus        47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n-  122 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN-  122 (466)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-
T ss_pred             cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCC-
Confidence            346666777788888888889999999999999988877888999999999988 7777766  889999999999999 


Q ss_pred             ccccccccccccccccccEEEecCCCCccccHhhhcCCC---------------------CcEEEccCCCCccccchhhh
Q 045968          100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVN---------------------LKCLNLRWTGALIRIPRQLI  158 (402)
Q Consensus       100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~---------------------L~~L~l~~~~~~~~~~~~~l  158 (402)
                       .++.++. +..+. +|++|++++|.+..++. +..+++                     |+.|++++| .++.++.  +
T Consensus       123 -~l~~~~~-~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l  195 (466)
T 1o6v_A          123 -QITDIDP-LKNLT-NLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--L  195 (466)
T ss_dssp             -CCCCCGG-GTTCT-TCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--G
T ss_pred             -CCCCChH-HcCCC-CCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--h
Confidence             8888765 77777 99999999887776643 444444                     444444442 3333332  4


Q ss_pred             hCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-
Q 045968          159 SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-  237 (402)
Q Consensus       159 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-  237 (402)
                      ..+++|++|++.+|.+...                 ..+..+++|+.|.++++....+..    ...+++|+.|++++| 
T Consensus       196 ~~l~~L~~L~l~~n~l~~~-----------------~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~  254 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDI-----------------TPLGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQ  254 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCC-----------------GGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSC
T ss_pred             ccCCCCCEEEecCCccccc-----------------ccccccCCCCEEECCCCCcccchh----hhcCCCCCEEECCCCc
Confidence            4455555555554444321                 113344455555554443332211    122334455554444 


Q ss_pred             -----------eeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCC
Q 045968          238 -----------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGC  293 (402)
Q Consensus       238 -----------~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c  293 (402)
                                 +|++|+++++......+.. .+++|+.|++++| .++.++.+..+++|+.|++++|
T Consensus       255 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          255 ISNLAPLSGLTKLTELKLGANQISNISPLA-GLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN  319 (466)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCCCCGGGT-TCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred             cccchhhhcCCCCCEEECCCCccCcccccc-CCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence                       3444555444443333322 4555555555554 4444444455555555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=3.7e-23  Score=202.78  Aligned_cols=332  Identities=19%  Similarity=0.170  Sum_probs=233.3

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+.....++..+|.+  .+++++|++++|.+..++.  ...+++|++|++++|.....+++..|..+++|++|++++| 
T Consensus        13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-   89 (455)
T 3v47_A           13 YNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-   89 (455)
T ss_dssp             TEEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-
T ss_pred             cccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-
Confidence            4566677788888873  3799999999999988743  4889999999999994444677666999999999999999 


Q ss_pred             cccccc-ccccccccccccEEEecCCCCcc-ccHh--hhcCCCCcEEEccCCCCcccc-chhhhhCCCCCcEEEeeeecc
Q 045968          100 QGRLKL-PVGMSVLGSSLELLDISCTGITE-LPEE--LKKLVNLKCLNLRWTGALIRI-PRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~  174 (402)
                       .+..+ |..++.+. +|++|++++|.+.. .+..  +..+++|++|++++| .++.+ |...+.++++|++|++.+|.+
T Consensus        90 -~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           90 -QFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             -TTCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             -ccCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcc
Confidence             88876 77888898 99999999999975 3444  889999999999994 66665 444478999999999999987


Q ss_pred             cccccCCCc-c--------cccCCcch----------hhHhhhcCCCCceEEEEecCchhh-HhhhhhhhhcccceeeEe
Q 045968          175 DRFHEAPED-S--------VLFGGGEV----------LIQELLGLKYLEVLELSLGSYHAL-QILLSSNKLKSCIRSLCL  234 (402)
Q Consensus       175 ~~~~~~~~~-~--------~~~~~~~~----------~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l  234 (402)
                      ........+ .        .++.+...          ....+..+++|+.|+++++..... ............|+.|.+
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            643211000 0        00000000          001123446788888876544321 111111112256777776


Q ss_pred             ccc--------------------------eeeeEeccccccccCCCCc-cccccccEEecccccCcccCc--ccccCCCC
Q 045968          235 DGF--------------------------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT--FLVFAPNL  285 (402)
Q Consensus       235 ~~~--------------------------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L  285 (402)
                      +++                          +|++|+++++......+.. ..+++|+.|++++| .++.++  .+..+++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHL  325 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccC
Confidence            654                          6888888887765554431 16889999999998 676653  67788999


Q ss_pred             CEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc-ccCccCCCCccEEEecCCCCCCCCCCCCC
Q 045968          286 KSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI-YWKPLPFTRLKEMAVLGCDQLEKLPVDSN  364 (402)
Q Consensus       286 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~i~~c~~L~~lp~~~~  364 (402)
                      ++|++++|.. ..+.           ...+..+++|+.|+++++ .+..+ +.....+++|++|+++++ +++.+|....
T Consensus       326 ~~L~Ls~N~l-~~~~-----------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~  391 (455)
T 3v47_A          326 LKLNLSQNFL-GSID-----------SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIF  391 (455)
T ss_dssp             CEEECCSSCC-CEEC-----------GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred             CEEECCCCcc-CCcC-----------hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhHh
Confidence            9999999754 3321           135678899999999987 45554 445566899999999886 6888876554


Q ss_pred             CCCCCeeEEE
Q 045968          365 SAKERKFVIR  374 (402)
Q Consensus       365 ~~~~~~~~~~  374 (402)
                      ....+++.+.
T Consensus       392 ~~l~~L~~L~  401 (455)
T 3v47_A          392 DRLTSLQKIW  401 (455)
T ss_dssp             TTCTTCCEEE
T ss_pred             ccCCcccEEE
Confidence            3335666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1e-23  Score=202.80  Aligned_cols=276  Identities=16%  Similarity=0.163  Sum_probs=215.7

Q ss_pred             CCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-cccccccccc
Q 045968           39 GWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSS  115 (402)
Q Consensus        39 ~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~  115 (402)
                      .+.+++.+++.++.+..+|..  ..+++|++|++++| .+..+++..|..+++|++|++++|  .+..+ |..++.+. +
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~  118 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVP-L  118 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCT-T
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC--CCCcCCHHHhcCCC-C
Confidence            457899999999999998874  78999999999998 788888766999999999999999  88877 45578888 9


Q ss_pred             ccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhh
Q 045968          116 LELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLI  194 (402)
Q Consensus       116 L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
                      |++|++++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...                 
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------  180 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------  180 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCcc-----------------
Confidence            99999999999999887 48899999999999 577777765689999999999999887531                 


Q ss_pred             HhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-----------eeeeEeccccccccCCCCcccccccc
Q 045968          195 QELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-----------ELEELKIDYTEIVRKRREPFVFRNLH  263 (402)
Q Consensus       195 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------~L~~L~i~~~~~~~~~~~~~~~~~L~  263 (402)
                       .+..+++|+.|.++.+....+       .....|+.|+++++           +|++|+++++......... .+++|+
T Consensus       181 -~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~-~l~~L~  251 (390)
T 3o6n_A          181 -DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL-NYPGLV  251 (390)
T ss_dssp             -CGGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGG-GCTTCS
T ss_pred             -ccccccccceeeccccccccc-------CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHc-CCCCcc
Confidence             245667788888775543322       22346777777776           5777777777664443333 788999


Q ss_pred             EEecccccCcccC--cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccC
Q 045968          264 RVTMVLCHKLKDV--TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLP  341 (402)
Q Consensus       264 ~L~l~~~~~l~~l--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~  341 (402)
                      .|+++++ .++.+  ..+..+++|++|++++|.. +.++            .....+++|+.|+++++ .+..++.....
T Consensus       252 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  316 (390)
T 3o6n_A          252 EVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-VALN------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQ  316 (390)
T ss_dssp             EEECCSS-CCCEEESGGGTTCSSCCEEECCSSCC-CEEE------------CSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred             EEECCCC-cCCCcChhHccccccCCEEECCCCcC-cccC------------cccCCCCCCCEEECCCC-cceecCccccc
Confidence            9999988 66664  3677889999999998653 3332            24567899999999987 56677666667


Q ss_pred             CCCccEEEecCCCCCCCCCC
Q 045968          342 FTRLKEMAVLGCDQLEKLPV  361 (402)
Q Consensus       342 ~~~L~~L~i~~c~~L~~lp~  361 (402)
                      +++|+.|++++++ ++.+|.
T Consensus       317 l~~L~~L~L~~N~-i~~~~~  335 (390)
T 3o6n_A          317 FDRLENLYLDHNS-IVTLKL  335 (390)
T ss_dssp             HTTCSEEECCSSC-CCCCCC
T ss_pred             cCcCCEEECCCCc-cceeCc
Confidence            8999999998874 777763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=5.9e-23  Score=202.72  Aligned_cols=293  Identities=20%  Similarity=0.194  Sum_probs=197.3

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+..+..+|.-- ..+++.|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++++| 
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-   90 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-
Confidence            45666777888887522 3689999999999998754  488999999999998 788876666999999999999999 


Q ss_pred             cccccccc-ccccccccccEEEecCCCCccc-cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968          100 QGRLKLPV-GMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                       .++.+|. .|..+. +|++|++++|.+..+ +..+..+++|++|++++ +.++.++...+.++++|++|++.+|.+.. 
T Consensus        91 -~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-  166 (477)
T 2id5_A           91 -RLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTS-  166 (477)
T ss_dssp             -CCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSS-
T ss_pred             -cCCccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcc-
Confidence             8998865 467788 999999999999876 44688999999999999 57777766568999999999999998753 


Q ss_pred             ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--------------eeeeEe
Q 045968          178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--------------ELEELK  243 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~  243 (402)
                                    .....+..+++|+.|.+..+....+..  .....+..|+.|+++++              +|++|+
T Consensus       167 --------------~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          167 --------------IPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             --------------CCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             --------------cChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence                          233457788999999998765544321  12333456666766654              455555


Q ss_pred             ccccccccCCCC--ccccccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCC
Q 045968          244 IDYTEIVRKRRE--PFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFE  319 (402)
Q Consensus       244 i~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~  319 (402)
                      ++++.....+..  . .+++|+.|+++++ .++.++  .+..+++|++|++++|..- .+.           ...+..++
T Consensus       231 l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-----------~~~~~~l~  296 (477)
T 2id5_A          231 ITHCNLTAVPYLAVR-HLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQLA-VVE-----------PYAFRGLN  296 (477)
T ss_dssp             EESSCCCSCCHHHHT-TCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCCS-EEC-----------TTTBTTCT
T ss_pred             CcCCcccccCHHHhc-CccccCeeECCCC-cCCccChhhccccccCCEEECCCCccc-eEC-----------HHHhcCcc
Confidence            555444322211  1 3455555555555 344432  2445555555555554321 111           12444555


Q ss_pred             ccceeecCccccccccccCc-cCCCCccEEEecC
Q 045968          320 NLQRLNLEDLPNLESIYWKP-LPFTRLKEMAVLG  352 (402)
Q Consensus       320 ~L~~L~l~~c~~l~~i~~~~-~~~~~L~~L~i~~  352 (402)
                      +|+.|+++++ .+..++... ..+++|+.|++++
T Consensus       297 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          297 YLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             TCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence            6666666553 344443321 2345555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=1.4e-22  Score=199.44  Aligned_cols=293  Identities=18%  Similarity=0.220  Sum_probs=222.2

Q ss_pred             cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ....+...+..+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..++.  +..+++|++|++++| 
T Consensus        69 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n-  144 (466)
T 1o6v_A           69 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSN-  144 (466)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEE-
T ss_pred             CCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCC-CCCCChH--HcCCCCCCEEECCCC-
Confidence            346666777777777667888888888888888887777788888888888887 6777665  788888888888888 


Q ss_pred             cccccccc--------------------ccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhh
Q 045968          100 QGRLKLPV--------------------GMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS  159 (402)
Q Consensus       100 ~~i~~l~~--------------------~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~  159 (402)
                       .+..++.                    .+..+. +|++|++++|.+..++ .+..+++|++|++++ +.++.++.  +.
T Consensus       145 -~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--~~  218 (466)
T 1o6v_A          145 -TISDISALSGLTSLQQLSFGNQVTDLKPLANLT-TLERLDISSNKVSDIS-VLAKLTNLESLIATN-NQISDITP--LG  218 (466)
T ss_dssp             -EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCT-TCCEEECCSSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GG
T ss_pred             -ccCCChhhccCCcccEeecCCcccCchhhccCC-CCCEEECcCCcCCCCh-hhccCCCCCEEEecC-Cccccccc--cc
Confidence             6655432                    144556 8999999999888774 478899999999998 46666655  77


Q ss_pred             CCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--
Q 045968          160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--  237 (402)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--  237 (402)
                      .+++|++|++.+|.+..                 +..+..+++|+.|+++++.......    ...++.|+.|.+++|  
T Consensus       219 ~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l  277 (466)
T 1o6v_A          219 ILTNLDELSLNGNQLKD-----------------IGTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQI  277 (466)
T ss_dssp             GCTTCCEEECCSSCCCC-----------------CGGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC
T ss_pred             ccCCCCEEECCCCCccc-----------------chhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCcc
Confidence            89999999999887752                 1346677888888887665544332    334557888888776  


Q ss_pred             ----------eeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCC
Q 045968          238 ----------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAE  307 (402)
Q Consensus       238 ----------~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  307 (402)
                                +|++|+++++......+.. .+++|+.|++++| .++.++.+..+++|+.|++++|.. ..+        
T Consensus       278 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l-~~~--------  346 (466)
T 1o6v_A          278 SNISPLAGLTALTNLELNENQLEDISPIS-NLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKV-SDV--------  346 (466)
T ss_dssp             CCCGGGTTCTTCSEEECCSSCCSCCGGGG-GCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCC-CCC--------
T ss_pred             CccccccCCCccCeEEcCCCcccCchhhc-CCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCcc-CCc--------
Confidence                      6888888888776666555 8999999999999 788887788999999999999854 322        


Q ss_pred             CccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCCC
Q 045968          308 TPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVD  362 (402)
Q Consensus       308 ~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~  362 (402)
                           ..+..+++|+.|++++|. +..+.. ...+++|+.|++++|+ ++.+|..
T Consensus       347 -----~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~~  393 (466)
T 1o6v_A          347 -----SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA-WTNAPVN  393 (466)
T ss_dssp             -----GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE-EECCCBC
T ss_pred             -----hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc-ccCCchh
Confidence                 256789999999999875 444443 5668999999998874 5555533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=2.6e-22  Score=203.88  Aligned_cols=148  Identities=21%  Similarity=0.184  Sum_probs=117.0

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+.++..+|.-. .++++.|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++++| 
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n-   90 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN-   90 (606)
T ss_dssp             TEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             CceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCC-
Confidence            45666777788887632 2789999999998888765  378899999999988 777776666888999999999998 


Q ss_pred             cccccc-ccccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCcc--ccchhhhhCCCCCcEEEeeeeccc
Q 045968          100 QGRLKL-PVGMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALI--RIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                       .++.+ |..|+.+. +|++|++++|.+..++ ..++++++|++|++++| .++  .+|.. +.++++|++|++.+|.+.
T Consensus        91 -~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           91 -PIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             -CCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred             -cccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcce
Confidence             78877 77788888 8999999998888776 45888889999999884 555  35664 888888888888887665


Q ss_pred             c
Q 045968          176 R  176 (402)
Q Consensus       176 ~  176 (402)
                      .
T Consensus       167 ~  167 (606)
T 3vq2_A          167 T  167 (606)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=4.5e-22  Score=200.56  Aligned_cols=147  Identities=22%  Similarity=0.227  Sum_probs=98.3

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+.++..+|.. -.++++.|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++++| 
T Consensus        10 ~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-   86 (570)
T 2z63_A           10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-   86 (570)
T ss_dssp             TEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             cEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCC-
Confidence            3455566666777652 23567778887777776653  367777777777777 666666666777777777777777 


Q ss_pred             ccccccc-cccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeeeccc
Q 045968          100 QGRLKLP-VGMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       100 ~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                       .++.++ ..|+.+. +|++|++++|.+..++. .+..+++|++|++++| .++.  +|.. +.++++|++|++.+|.+.
T Consensus        87 -~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           87 -PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             -CCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred             -cCCccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc
Confidence             676663 5566666 77777777777766654 3667777777777773 4443  4543 667777777777666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=2.3e-22  Score=201.91  Aligned_cols=150  Identities=20%  Similarity=0.249  Sum_probs=123.0

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ......+.++..+|..- .++++.|++++|.+..++.  ...+++|++|++++| .+..+++..|..+++|++|++++| 
T Consensus         8 ~~c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-   84 (549)
T 2z81_A            8 GVCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-   84 (549)
T ss_dssp             SEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-
T ss_pred             ceEECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-
Confidence            44455566777887633 3789999999999988743  488999999999998 777877666899999999999999 


Q ss_pred             cccccccc-ccccccccccEEEecCCCCccc--cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968          100 QGRLKLPV-GMSVLGSSLELLDISCTGITEL--PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                       .++.++. .++.+. +|++|++++|.+..+  |..+.++++|++|++++|..++.++...+.++++|++|++.+|.+..
T Consensus        85 -~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           85 -HLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             -CCCSCCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             -ccCccCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence             8888754 488888 999999999988854  56688999999999999766788876558999999999999988754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=4.9e-22  Score=201.93  Aligned_cols=148  Identities=20%  Similarity=0.131  Sum_probs=120.1

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+.++..+|..- .++++.|++++|.++.++.  ...+++|++|++++| .+..+.+..|.++++|++|++++| 
T Consensus        15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-   91 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN-   91 (606)
T ss_dssp             TEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             ceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCC-
Confidence            45666777888887532 2589999999999998754  388999999999998 777776666999999999999999 


Q ss_pred             cccccc-ccccccccccccEEEecCCCCccc-cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          100 QGRLKL-PVGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                       .+..+ |..++.+. +|++|++++|.+..+ +..+..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus        92 -~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A           92 -PLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             -CCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred             -cccccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCccc
Confidence             88776 67788888 999999999999887 45688999999999999 5677653222566999999999998774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.89  E-value=7.2e-22  Score=200.65  Aligned_cols=61  Identities=13%  Similarity=0.162  Sum_probs=37.2

Q ss_pred             ccCCccceEEEccCCccccc--CCCCCCCccceEeccccccccccchHHhccCCCCC--EEEccCC
Q 045968           37 VKGWENVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLK--VLKMSNC   98 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~--~L~l~~~   98 (402)
                      +..+++|+.|++++|.+..+  +....+++|++|++++| .+..+++..+..+++|+  .|++++|
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n  189 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGN  189 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred             hccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCC
Confidence            44555666666666666554  33345667777777766 55555555566677666  6666666

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=4.3e-22  Score=196.53  Aligned_cols=282  Identities=18%  Similarity=0.169  Sum_probs=218.6

Q ss_pred             eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEec
Q 045968           44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDIS  122 (402)
Q Consensus        44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~  122 (402)
                      +.++..++.+..+|... .++++.|++++| .+..+++..|..+++|++|++++|  .++.+ |..|..+. +|++|+++
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~-~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNEN--IVSAVEPGAFNNLF-NLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCT-TCCEEECC
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCC--ccCEeChhhhhCCc-cCCEEECC
Confidence            46777788888887642 368999999998 888887766999999999999999  88877 77888898 99999999


Q ss_pred             CCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCC
Q 045968          123 CTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK  201 (402)
Q Consensus       123 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  201 (402)
                      +|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.++.+..               .....+..++
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~  152 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVY---------------ISHRAFSGLN  152 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEECCTTCCE---------------ECTTSSTTCT
T ss_pred             CCcCCccCcccccCCCCCCEEECCC-CccccCChhHccccccCCEEECCCCccce---------------eChhhccCCC
Confidence            9999999876 68899999999999 57777665568999999999999988743               2234567889


Q ss_pred             CCceEEEEecCchhhHhhhhhhhhcccceeeEeccc--------------eeeeEeccccccccCCCC-ccccccccEEe
Q 045968          202 YLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRRE-PFVFRNLHRVT  266 (402)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~  266 (402)
                      +|+.|.++.+....+..  .....+++|+.|.++++              +|++|+++++......+. .....+|+.|+
T Consensus       153 ~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPT--EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             TCCEEEEESCCCSSCCH--HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCEEECCCCcCcccCh--hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence            99999999776554331  22344568999999887              677777777554333332 21345899999


Q ss_pred             cccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc-ccCccCCC
Q 045968          267 MVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI-YWKPLPFT  343 (402)
Q Consensus       267 l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i-~~~~~~~~  343 (402)
                      +++| .++.++  .+..+++|+.|++++|.. +.+.           ...+..+++|+.|+++++ .+..+ +.....++
T Consensus       231 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~-----------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~  296 (477)
T 2id5_A          231 ITHC-NLTAVPYLAVRHLVYLRFLNLSYNPI-STIE-----------GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLN  296 (477)
T ss_dssp             EESS-CCCSCCHHHHTTCTTCCEEECCSSCC-CEEC-----------TTSCTTCTTCCEEECCSS-CCSEECTTTBTTCT
T ss_pred             CcCC-cccccCHHHhcCccccCeeECCCCcC-CccC-----------hhhccccccCCEEECCCC-ccceECHHHhcCcc
Confidence            9998 788876  577899999999999763 3332           135778999999999986 45444 34455689


Q ss_pred             CccEEEecCCCCCCCCCCCC
Q 045968          344 RLKEMAVLGCDQLEKLPVDS  363 (402)
Q Consensus       344 ~L~~L~i~~c~~L~~lp~~~  363 (402)
                      +|+.|+++++ +++.+|...
T Consensus       297 ~L~~L~L~~N-~l~~~~~~~  315 (477)
T 2id5_A          297 YLRVLNVSGN-QLTTLEESV  315 (477)
T ss_dssp             TCCEEECCSS-CCSCCCGGG
T ss_pred             cCCEEECCCC-cCceeCHhH
Confidence            9999999887 678877544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.89  E-value=6.1e-22  Score=201.19  Aligned_cols=130  Identities=22%  Similarity=0.259  Sum_probs=105.0

Q ss_pred             cCcEEEEeCCccccCC--CccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968           20 KRNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM   95 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l   95 (402)
                      ....+...+..+..++  .+.++++|++|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEEC
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEc
Confidence            3466666776776664  47788999999999999888754  378999999999988 677775555899999999999


Q ss_pred             cCCCccccccc-cccccccccccEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccc
Q 045968           96 SNCGQGRLKLP-VGMSVLGSSLELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIP  154 (402)
Q Consensus        96 ~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~  154 (402)
                      ++|  .+..++ ..++.+. +|++|++++|.+.  .+|..+.++++|++|++++| .++.++
T Consensus       112 ~~n--~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~  169 (606)
T 3vq2_A          112 VET--KLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTIT  169 (606)
T ss_dssp             TTS--CCCCSSSSCCTTCT-TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEEC
T ss_pred             cCC--ccccccccccCCCC-CCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecC
Confidence            999  888774 6788888 9999999999887  47888999999999999884 555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=4.3e-22  Score=191.47  Aligned_cols=285  Identities=19%  Similarity=0.263  Sum_probs=207.6

Q ss_pred             cCcEEEEeCCccccCCC--ccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968           20 KRNFLVRAGAGLKEAPD--VKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM   95 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l   95 (402)
                      ....+.+....+..+|.  +..+++|+.|++++|.+..++.  ...+++|++|++++| .+..+++..+..+++|++|++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEEC
Confidence            34667777777777776  6778999999999999998764  488999999999999 788888777899999999999


Q ss_pred             cCCCccccccccc-cccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeec
Q 045968           96 SNCGQGRLKLPVG-MSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIG  173 (402)
Q Consensus        96 ~~~~~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  173 (402)
                      ++|  .++.+|.. +..+. +|++|++++|.+..++. .+..+++|++|++++ +.++.++   +..+++|++|++.++.
T Consensus       125 ~~n--~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          125 ERN--DLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             CSS--CCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             CCC--ccCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccc
Confidence            999  89988765 57788 99999999999988755 488999999999999 5777765   5668889999888876


Q ss_pred             ccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc------------eeee
Q 045968          174 YDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF------------ELEE  241 (402)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------~L~~  241 (402)
                      +...                    ...+.|+.|.++++....++.     .....|+.|.+++|            +|++
T Consensus       198 l~~~--------------------~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~  252 (390)
T 3o6n_A          198 LSTL--------------------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTAWLLNYPGLVE  252 (390)
T ss_dssp             CSEE--------------------ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             cccc--------------------CCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcccHHHcCCCCccE
Confidence            6431                    122234444443332221110     11123444444433            5666


Q ss_pred             EeccccccccCCCCc-cccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCC
Q 045968          242 LKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFE  319 (402)
Q Consensus       242 L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~  319 (402)
                      |+++++......+.. ..+++|+.|+++++ .++.++ ....+++|++|++++|.. ..++            ..+..++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~l-~~~~------------~~~~~l~  318 (390)
T 3o6n_A          253 VDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVE------------RNQPQFD  318 (390)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSCC-CCCG------------GGHHHHT
T ss_pred             EECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCcc-eecC------------ccccccC
Confidence            666666554433321 16899999999998 777775 345789999999999854 3333            2456789


Q ss_pred             ccceeecCccccccccccCccCCCCccEEEecCCC
Q 045968          320 NLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCD  354 (402)
Q Consensus       320 ~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~  354 (402)
                      +|+.|+++++. +..++  ...+++|+.|++++++
T Consensus       319 ~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          319 RLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             TCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             cCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence            99999999964 56554  4557888888887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.3e-22  Score=205.83  Aligned_cols=277  Identities=16%  Similarity=0.163  Sum_probs=215.9

Q ss_pred             CCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-ccccccccc
Q 045968           39 GWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSS  115 (402)
Q Consensus        39 ~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~  115 (402)
                      .+.+++.+++.++.+..+|..  ..+++|++|++++| .+..+++..|..+++|++|++++|  .+..++ ..|+.+. +
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~  124 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVP-L  124 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCT-T
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC--cCCCCCHHHHcCCC-C
Confidence            356889999999999988874  67899999999998 788887766999999999999999  888874 4568888 9


Q ss_pred             ccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhh
Q 045968          116 LELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLI  194 (402)
Q Consensus       116 L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
                      |++|++++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...                 
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------  186 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------  186 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------------
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCCc-----------------
Confidence            99999999999999877 58999999999999 577777765689999999999999887531                 


Q ss_pred             HhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-----------eeeeEeccccccccCCCCcccccccc
Q 045968          195 QELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-----------ELEELKIDYTEIVRKRREPFVFRNLH  263 (402)
Q Consensus       195 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------~L~~L~i~~~~~~~~~~~~~~~~~L~  263 (402)
                       .+..+++|+.|.++++....+       ..+..|+.|++++|           +|+.|+++++......... .+++|+
T Consensus       187 -~~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~-~l~~L~  257 (597)
T 3oja_B          187 -DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL-NYPGLV  257 (597)
T ss_dssp             -CGGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG-GCTTCS
T ss_pred             -ChhhhhhhhhhhcccCccccc-------cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc-cCCCCC
Confidence             245577788888775543322       22346777777776           5778888877665443334 788999


Q ss_pred             EEecccccCcccC--cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccC
Q 045968          264 RVTMVLCHKLKDV--TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLP  341 (402)
Q Consensus       264 ~L~l~~~~~l~~l--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~  341 (402)
                      .|++++| .++.+  ..+..+++|+.|++++|.. ..++            .....+|+|+.|++++| .+..++.....
T Consensus       258 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~------------~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~  322 (597)
T 3oja_B          258 EVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRL-VALN------------LYGQPIPTLKVLDLSHN-HLLHVERNQPQ  322 (597)
T ss_dssp             EEECCSS-CCCEEESGGGTTCSSCCEEECTTSCC-CEEE------------CSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred             EEECCCC-ccCCCCHHHhcCccCCCEEECCCCCC-CCCC------------cccccCCCCcEEECCCC-CCCccCccccc
Confidence            9999998 66664  3677899999999999754 3332            34567899999999986 56677766677


Q ss_pred             CCCccEEEecCCCCCCCCCCC
Q 045968          342 FTRLKEMAVLGCDQLEKLPVD  362 (402)
Q Consensus       342 ~~~L~~L~i~~c~~L~~lp~~  362 (402)
                      +++|+.|++++|. +..+|..
T Consensus       323 l~~L~~L~L~~N~-l~~~~~~  342 (597)
T 3oja_B          323 FDRLENLYLDHNS-IVTLKLS  342 (597)
T ss_dssp             HTTCSEEECCSSC-CCCCCCC
T ss_pred             CCCCCEEECCCCC-CCCcChh
Confidence            8999999998874 7777633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.89  E-value=1.4e-22  Score=206.98  Aligned_cols=314  Identities=11%  Similarity=0.100  Sum_probs=208.5

Q ss_pred             CCC-ccCCccceEEEccCCcccc------------------cCCC-C--CCCccceEeccccccccccchHHhccCCCCC
Q 045968           34 APD-VKGWENVRRLSLMQNQIET------------------VSEV-P--TCPHLLTLFLDFNQELEMIADGFFQLMPSLK   91 (402)
Q Consensus        34 ~~~-~~~~~~l~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~   91 (402)
                      +|. +..+++|+.|++++|.+..                  +|.. .  .+++|++|++++|.....+|.. +.++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCC
Confidence            443 6778899999999998887                  7765 5  7999999999998555667766 88999999


Q ss_pred             EEEccCCCcc-ccc--cccccccc------cccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCcc-ccchhhhh
Q 045968           92 VLKMSNCGQG-RLK--LPVGMSVL------GSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALI-RIPRQLIS  159 (402)
Q Consensus        92 ~L~l~~~~~~-i~~--l~~~~~~l------~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~-~~~~~~l~  159 (402)
                      +|++++|  . ++.  +|..++.+      . +|++|++++|.+..+|.  .+..+++|++|++++| .++ .+| . +.
T Consensus       277 ~L~Ls~n--~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~  350 (636)
T 4eco_A          277 LINVACN--RGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-A-FG  350 (636)
T ss_dssp             EEECTTC--TTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-C-CE
T ss_pred             EEECcCC--CCCccccchHHHHhhhccccCC-CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-h-hC
Confidence            9999999  6 774  78877776      6 99999999999989988  7899999999999984 566 788 3 88


Q ss_pred             CCCCCcEEEeeeecccccccCCCc-------ccccCCcchhhH-hhhc--CCCCceEEEEecCchhhHhhhhhhh-----
Q 045968          160 KFSRLRVLRMFAIGYDRFHEAPED-------SVLFGGGEVLIQ-ELLG--LKYLEVLELSLGSYHALQILLSSNK-----  224 (402)
Q Consensus       160 ~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~-----  224 (402)
                      .+++|++|++.+|.+...+..+.+       ..++.+....+. .+..  +++|+.|+++.+.....  .+....     
T Consensus       351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~~~~~  428 (636)
T 4eco_A          351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV--DGKNFDPLDPT  428 (636)
T ss_dssp             EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT--TTCSSCTTCSS
T ss_pred             CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc--chhhhcccccc
Confidence            888888888888876532211111       011111111111 1111  22455555554332211  011111     


Q ss_pred             --hcccceeeEeccc--------------eeeeEeccccccccCCCCccc--------cccccEEecccccCcccCc-cc
Q 045968          225 --LKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRREPFV--------FRNLHRVTMVLCHKLKDVT-FL  279 (402)
Q Consensus       225 --~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~l~~l~-~~  279 (402)
                        ...+|+.|++++|              +|++|+++++.....+...+.        +++|+.|++++| .++.++ .+
T Consensus       429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~  507 (636)
T 4eco_A          429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDF  507 (636)
T ss_dssp             CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGG
T ss_pred             cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhh
Confidence              2336777777766              577777777666533332211        127888888887 666765 34


Q ss_pred             c--cCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCc------cccccccccCccCCCCccEEEec
Q 045968          280 V--FAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLED------LPNLESIYWKPLPFTRLKEMAVL  351 (402)
Q Consensus       280 ~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~i~~~~~~~~~L~~L~i~  351 (402)
                      .  .+++|++|++++|..-. ++            ..+..+++|+.|++++      +.-...++.....+++|++|+++
T Consensus       508 ~~~~l~~L~~L~Ls~N~l~~-ip------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          508 RATTLPYLVGIDLSYNSFSK-FP------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             STTTCTTCCEEECCSSCCSS-CC------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             hhccCCCcCEEECCCCCCCC-cC------------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence            4  78888888888865432 32            3556788999999854      33345566666678999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCeeEEE
Q 045968          352 GCDQLEKLPVDSNSAKERKFVIR  374 (402)
Q Consensus       352 ~c~~L~~lp~~~~~~~~~~~~~~  374 (402)
                      ++. ++.+|....   .+++.++
T Consensus       575 ~N~-l~~ip~~~~---~~L~~L~  593 (636)
T 4eco_A          575 SND-IRKVNEKIT---PNISVLD  593 (636)
T ss_dssp             SSC-CCBCCSCCC---TTCCEEE
T ss_pred             CCc-CCccCHhHh---CcCCEEE
Confidence            875 588886533   4555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=4.2e-22  Score=208.09  Aligned_cols=317  Identities=11%  Similarity=0.084  Sum_probs=206.4

Q ss_pred             CC-CccCCccceEEEccCCcccc------------------cCCC-C--CCCccceEeccccccccccchHHhccCCCCC
Q 045968           34 AP-DVKGWENVRRLSLMQNQIET------------------VSEV-P--TCPHLLTLFLDFNQELEMIADGFFQLMPSLK   91 (402)
Q Consensus        34 ~~-~~~~~~~l~~L~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~   91 (402)
                      +| .+..+++|+.|++++|.+..                  +|.. .  .+++|++|++++|.....+|.. +.++++|+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQ  518 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCC
Confidence            54 37778899999999998887                  7765 4  7999999999998556667765 89999999


Q ss_pred             EEEccCCCcc-ccc--ccccccccc------ccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccchhhhhC
Q 045968           92 VLKMSNCGQG-RLK--LPVGMSVLG------SSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPRQLISK  160 (402)
Q Consensus        92 ~L~l~~~~~~-i~~--l~~~~~~l~------~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~  160 (402)
                      +|++++|  . ++.  +|..++.+.      |+|++|++++|.+..+|.  .+.++++|+.|++++ +.++.+| . +..
T Consensus       519 ~L~Ls~N--~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp-~-~~~  593 (876)
T 4ecn_A          519 SLNIACN--RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKVRHLE-A-FGT  593 (876)
T ss_dssp             EEECTTC--TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTT-SCCCBCC-C-CCT
T ss_pred             EEECcCC--CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCC-CCcccch-h-hcC
Confidence            9999999  6 664  676555432      389999999999989988  789999999999998 4667888 3 888


Q ss_pred             CCCCcEEEeeeecccccccCCCc-------ccccCCcchhhH-hhhcC--CCCceEEEEecCchhh-Hhhhhhhh--hcc
Q 045968          161 FSRLRVLRMFAIGYDRFHEAPED-------SVLFGGGEVLIQ-ELLGL--KYLEVLELSLGSYHAL-QILLSSNK--LKS  227 (402)
Q Consensus       161 l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~l~~l--~~L~~L~l~~~~~~~~-~~~~~~~~--~~~  227 (402)
                      +++|++|++.+|.+...+..+.+       ..++.+....+. .+..+  ++|+.|.++.+..... +.++....  ...
T Consensus       594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            99999999998887532211111       011111110111 11111  2244555543332211 11111111  112


Q ss_pred             cceeeEeccc--------------eeeeEeccccccccCCCCcc--------ccccccEEecccccCcccCc-ccc--cC
Q 045968          228 CIRSLCLDGF--------------ELEELKIDYTEIVRKRREPF--------VFRNLHRVTMVLCHKLKDVT-FLV--FA  282 (402)
Q Consensus       228 ~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~~l~-~~~--~l  282 (402)
                      +|+.|++++|              +|+.|+++++.....+...+        .+++|+.|++++| .++.++ .+.  .+
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l  752 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTL  752 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTC
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccC
Confidence            5667777666              56777777665543332211        1237888888887 676765 343  68


Q ss_pred             CCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcc------ccccccccCccCCCCccEEEecCCCCC
Q 045968          283 PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL------PNLESIYWKPLPFTRLKEMAVLGCDQL  356 (402)
Q Consensus       283 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c------~~l~~i~~~~~~~~~L~~L~i~~c~~L  356 (402)
                      ++|+.|++++|..- .++            ..+..+++|+.|+++++      .-...++.....+++|+.|++++|. +
T Consensus       753 ~~L~~L~Ls~N~L~-~lp------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L  818 (876)
T 4ecn_A          753 PYLSNMDVSYNCFS-SFP------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-I  818 (876)
T ss_dssp             TTCCEEECCSSCCS-SCC------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-C
T ss_pred             CCcCEEEeCCCCCC-ccc------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-C
Confidence            88888888886542 232            35667888999988763      3335556566678999999998874 5


Q ss_pred             CCCCCCCCCCCCCeeEEE
Q 045968          357 EKLPVDSNSAKERKFVIR  374 (402)
Q Consensus       357 ~~lp~~~~~~~~~~~~~~  374 (402)
                      ..+|....   ++++.++
T Consensus       819 ~~Ip~~l~---~~L~~Ld  833 (876)
T 4ecn_A          819 RKVDEKLT---PQLYILD  833 (876)
T ss_dssp             CBCCSCCC---SSSCEEE
T ss_pred             CccCHhhc---CCCCEEE
Confidence            88886633   3454444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=2.4e-22  Score=197.05  Aligned_cols=138  Identities=17%  Similarity=0.178  Sum_probs=68.1

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcc
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG  101 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  101 (402)
                      ..+......+..+|.+..+++|+.|++++|.+..++ ...+++|++|++++| .+..++   +..+++|++|++++|  .
T Consensus        45 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N--~  117 (457)
T 3bz5_A           45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTN--K  117 (457)
T ss_dssp             CEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSS--C
T ss_pred             CEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCC--c
Confidence            334444444444444555555555555555555443 444555555555554 344432   445555555555555  4


Q ss_pred             ccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          102 RLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       102 i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      ++.++  ++.+. +|++|++++|.+..++  +..+++|++|++++|..+..++   +..+++|++|++.+|.+
T Consensus       118 l~~l~--~~~l~-~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          118 LTKLD--VSQNP-LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             CSCCC--CTTCT-TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred             CCeec--CCCCC-cCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcc
Confidence            44443  44444 5555555555555442  4455555555555543444442   34455555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=3.8e-21  Score=191.80  Aligned_cols=143  Identities=19%  Similarity=0.240  Sum_probs=119.9

Q ss_pred             CcEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968           21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~   98 (402)
                      +..+...+..+..+|..-. +++++|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++++|
T Consensus         2 ~~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CCEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             cceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence            3566777788888876333 899999999999988764  488999999999999 788876666999999999999999


Q ss_pred             CccccccccccccccccccEEEecCCCCcc--ccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCC--cEEEeeeecc
Q 045968           99 GQGRLKLPVGMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL--RVLRMFAIGY  174 (402)
Q Consensus        99 ~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  174 (402)
                        .++.+|..  .+. +|++|++++|.+..  +|..++.+++|++|++++ +.++..   .+..+++|  ++|++.+|.+
T Consensus        80 --~l~~lp~~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~---~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           80 --KLVKISCH--PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THLEKS---SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             --CCCEEECC--CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred             --ceeecCcc--ccC-CccEEeccCCccccccchhhhccCCcceEEEecC-cccchh---hccccccceeeEEEeecccc
Confidence              89988876  677 99999999999986  567899999999999999 456552   26777888  9999999877

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=9.7e-22  Score=205.04  Aligned_cols=145  Identities=23%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccc-cCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIET-VSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      ..+......+........+++|+.|++++|.+.. ++....+++|++|++++| .+....+..+..+++|++|++++|  
T Consensus       181 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n--  257 (768)
T 3rgz_A          181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN--  257 (768)
T ss_dssp             CEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSS--
T ss_pred             CEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCC--
Confidence            3334444344333344566777777777776665 344567778888888877 554433334777777777777777  


Q ss_pred             ccccc-ccccccccccccEEEecCCCCc-cccHhhhcC-CCCcEEEccCCCCcc-ccchhhhhCCCCCcEEEeeeecc
Q 045968          101 GRLKL-PVGMSVLGSSLELLDISCTGIT-ELPEELKKL-VNLKCLNLRWTGALI-RIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       101 ~i~~l-~~~~~~l~~~L~~L~L~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      .+... |..  .+. +|++|++++|.+. .+|..+... ++|++|++++| .++ .+|.. +.++++|++|++.+|.+
T Consensus       258 ~l~~~~~~~--~l~-~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~L~~n~l  330 (768)
T 3rgz_A          258 QFVGPIPPL--PLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPF-FGSCSLLESLALSSNNF  330 (768)
T ss_dssp             CCEESCCCC--CCT-TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGG-GGGCTTCCEEECCSSEE
T ss_pred             cccCccCcc--ccC-CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchH-HhcCCCccEEECCCCcc
Confidence            55532 221  333 5555555555444 444444332 55555555553 222 23332 55555555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=8e-22  Score=185.41  Aligned_cols=261  Identities=19%  Similarity=0.234  Sum_probs=178.4

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~  120 (402)
                      +++.++++++.+..+|... .+++++|++++| .+..+++..|..+++|++|++++|  .++.+ |..+..+. +|++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN--KISKIHEKAFSPLR-KLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS--CCCEECGGGSTTCT-TCCEEE
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC--ccCccCHhHhhCcC-CCCEEE
Confidence            6888999998888877543 478999999988 777777666899999999999999  88877 67788888 999999


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL  200 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  200 (402)
                      +++|.+..+|..+.  ++|++|++++ +.++.++...+.++++|++|++.++.+...             ......+..+
T Consensus       109 L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l  172 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL  172 (332)
T ss_dssp             CCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC
T ss_pred             CCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC
Confidence            99999988887654  7899999998 577888876688999999999998877421             1112234444


Q ss_pred             CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC-ccccccccEEecccccCcccCc--
Q 045968          201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE-PFVFRNLHRVTMVLCHKLKDVT--  277 (402)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~--  277 (402)
                       +|+.|.++.+....++   ..  ..+.|+.|+++          ++......+. -..+++|+.|+++++ .++.++  
T Consensus       173 -~L~~L~l~~n~l~~l~---~~--~~~~L~~L~l~----------~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~  235 (332)
T 2ft3_A          173 -KLNYLRISEAKLTGIP---KD--LPETLNELHLD----------HNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG  235 (332)
T ss_dssp             -CCSCCBCCSSBCSSCC---SS--SCSSCSCCBCC----------SSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT
T ss_pred             -ccCEEECcCCCCCccC---cc--ccCCCCEEECC----------CCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChh
Confidence             6778888765544322   11  11344444444          4433222221 115677778888777 566653  


Q ss_pred             ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCcc-------CCCCccEEEe
Q 045968          278 FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPL-------PFTRLKEMAV  350 (402)
Q Consensus       278 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~-------~~~~L~~L~i  350 (402)
                      .+..+++|++|++++|.. +.++            ..+..+++|+.|+++++ .+..++....       .+++|+.|++
T Consensus       236 ~~~~l~~L~~L~L~~N~l-~~lp------------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          236 SLSFLPTLRELHLDNNKL-SRVP------------AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             GGGGCTTCCEEECCSSCC-CBCC------------TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             HhhCCCCCCEEECCCCcC-eecC------------hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence            466777888888877643 2332            24566777888888774 4544443211       1466777777


Q ss_pred             cCCC
Q 045968          351 LGCD  354 (402)
Q Consensus       351 ~~c~  354 (402)
                      .+++
T Consensus       302 ~~N~  305 (332)
T 2ft3_A          302 FNNP  305 (332)
T ss_dssp             CSSS
T ss_pred             ecCc
Confidence            7765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=6.5e-22  Score=202.02  Aligned_cols=208  Identities=15%  Similarity=0.258  Sum_probs=131.9

Q ss_pred             CCCCccceEeccccccccc------------------cchHHhc--cCCCCCEEEccCCCcccc-ccccccccccccccE
Q 045968           60 PTCPHLLTLFLDFNQELEM------------------IADGFFQ--LMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLEL  118 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~------------------~~~~~~~--~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~  118 (402)
                      ..+++|++|++++| .+..                  +|.. +.  ++++|++|++++|  .+. .+|..++.+. +|++
T Consensus       203 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~-~L~~  277 (636)
T 4eco_A          203 MRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC--PNLTKLPTFLKALP-EMQL  277 (636)
T ss_dssp             GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC--TTCSSCCTTTTTCS-SCCE
T ss_pred             hcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC--cCCccChHHHhcCC-CCCE
Confidence            67888899999888 5666                  7766 66  8889999999988  554 5688888888 8999


Q ss_pred             EEecCCC-Cc--cccHhhhcC------CCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeeccc-ccccCCCccccc
Q 045968          119 LDISCTG-IT--ELPEELKKL------VNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYD-RFHEAPEDSVLF  187 (402)
Q Consensus       119 L~L~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~  187 (402)
                      |++++|. +.  .+|..++.+      ++|++|++++ +.++.+|. ..+.++++|++|++.+|.+. ..+         
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---------  347 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---------  347 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC---------
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccchh---------
Confidence            9999887 76  478877776      8899999988 46668886 13888999999998888775 211         


Q ss_pred             CCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhccc-ceeeEeccc---------------eeeeEecccccccc
Q 045968          188 GGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSC-IRSLCLDGF---------------ELEELKIDYTEIVR  251 (402)
Q Consensus       188 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~---------------~L~~L~i~~~~~~~  251 (402)
                              .+..+++|+.|.++.+...   .++........ |+.|++++|               +|++|+++++....
T Consensus       348 --------~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~  416 (636)
T 4eco_A          348 --------AFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS  416 (636)
T ss_dssp             --------CCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             --------hhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence                    3444455555555543322   22222222333 555555554               35555555554433


Q ss_pred             CCCCc--------cccccccEEecccccCcccCcc--cccCCCCCEEeecCCc
Q 045968          252 KRREP--------FVFRNLHRVTMVLCHKLKDVTF--LVFAPNLKSLDLDGCD  294 (402)
Q Consensus       252 ~~~~~--------~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~c~  294 (402)
                      ..|..        ..+++|+.|++++| .++.++.  +..+++|++|++++|.
T Consensus       417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          417 VDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             TTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred             cchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC
Confidence            22211        02335666666665 4445432  3345666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=1.7e-21  Score=190.90  Aligned_cols=214  Identities=15%  Similarity=0.149  Sum_probs=157.4

Q ss_pred             CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968           36 DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS  115 (402)
Q Consensus        36 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~  115 (402)
                      .+..+++++.|+++++.+..+|....+++|++|++++| .+..++   +..+++|++|++++|  .++.++  ++.+. +
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N--~l~~~~--~~~l~-~  107 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSN--KLTNLD--VTPLT-K  107 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSS--CCSCCC--CTTCT-T
T ss_pred             ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCC--CCceee--cCCCC-c
Confidence            45667899999999999999887889999999999999 777774   789999999999999  888875  77788 9


Q ss_pred             ccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhH
Q 045968          116 LELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQ  195 (402)
Q Consensus       116 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
                      |++|++++|.+..+|  +..+++|++|++++ +.++.++   +.++++|++|++.+|.....              .   
T Consensus       108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~--------------~---  164 (457)
T 3bz5_A          108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITK--------------L---  164 (457)
T ss_dssp             CCEEECCSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCC--------------C---
T ss_pred             CCEEECCCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCcccc--------------c---
Confidence            999999999999886  88999999999999 5777774   77899999999999854321              1   


Q ss_pred             hhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-----------eeeeEeccccccccCCCCccccccccE
Q 045968          196 ELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-----------ELEELKIDYTEIVRKRREPFVFRNLHR  264 (402)
Q Consensus       196 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------~L~~L~i~~~~~~~~~~~~~~~~~L~~  264 (402)
                      .+..+++|+.|+++.+....++     ....+.|+.|.+++|           +|++|+++++.... +|.. .+++|+.
T Consensus       165 ~~~~l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip~~-~l~~L~~  237 (457)
T 3bz5_A          165 DVTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-IDVT-PLTQLTY  237 (457)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CCCT-TCTTCSE
T ss_pred             ccccCCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cCcc-ccCCCCE
Confidence            2455666777777655444432     223345666666655           56666666665544 2333 5777777


Q ss_pred             EecccccCcccCcccccCCCCCEEee
Q 045968          265 VTMVLCHKLKDVTFLVFAPNLKSLDL  290 (402)
Q Consensus       265 L~l~~~~~l~~l~~~~~l~~L~~L~l  290 (402)
                      |+++++ .++.++ ...+++|+.|++
T Consensus       238 L~l~~N-~l~~~~-~~~l~~L~~L~l  261 (457)
T 3bz5_A          238 FDCSVN-PLTELD-VSTLSKLTTLHC  261 (457)
T ss_dssp             EECCSS-CCSCCC-CTTCTTCCEEEC
T ss_pred             EEeeCC-cCCCcC-HHHCCCCCEEec
Confidence            777776 555543 333444443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=1.2e-21  Score=198.65  Aligned_cols=283  Identities=19%  Similarity=0.269  Sum_probs=206.3

Q ss_pred             cEEEEeCCccccCCC--ccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccC
Q 045968           22 NFLVRAGAGLKEAPD--VKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN   97 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~   97 (402)
                      ..+.+....+..+|.  +..+++|+.|++++|.+..++.  ...+++|++|++++| .+..+++..|..+++|++|++++
T Consensus        54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~  132 (597)
T 3oja_B           54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER  132 (597)
T ss_dssp             SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeC
Confidence            555566666666665  5678899999999999998764  488999999999999 78888887789999999999999


Q ss_pred             CCccccccccc-cccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968           98 CGQGRLKLPVG-MSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus        98 ~~~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      |  .++.+|.. |+.+. +|++|++++|.+..++. .+..+++|++|++++ +.++.++   +..+++|++|++.++.+.
T Consensus       133 n--~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          133 N--DLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             S--CCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             C--CCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCccc
Confidence            9  89988765 57788 99999999999987765 588999999999999 5777775   456889999998887764


Q ss_pred             ccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc------------eeeeEe
Q 045968          176 RFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF------------ELEELK  243 (402)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------~L~~L~  243 (402)
                      ..                    ...+.|+.|.++++....+..     ....+|+.|.+++|            +|++|+
T Consensus       206 ~l--------------------~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~  260 (597)
T 3oja_B          206 TL--------------------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDTAWLLNYPGLVEVD  260 (597)
T ss_dssp             EE--------------------ECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             cc--------------------cCCchhheeeccCCccccccc-----ccCCCCCEEECCCCCCCCChhhccCCCCCEEE
Confidence            31                    222334444444332221110     01123444444443            566666


Q ss_pred             ccccccccCCCCc-cccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCcc
Q 045968          244 IDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENL  321 (402)
Q Consensus       244 i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L  321 (402)
                      ++++......+.. ..+++|+.|++++| .++.++ ....+++|+.|++++|... .++            ..+..+++|
T Consensus       261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~------------~~~~~l~~L  326 (597)
T 3oja_B          261 LSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVE------------RNQPQFDRL  326 (597)
T ss_dssp             CCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCG------------GGHHHHTTC
T ss_pred             CCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccC------------cccccCCCC
Confidence            6666554443321 16889999999998 777775 3456899999999997643 333            245678999


Q ss_pred             ceeecCccccccccccCccCCCCccEEEecCCC
Q 045968          322 QRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCD  354 (402)
Q Consensus       322 ~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~  354 (402)
                      +.|++++|. +..++  ...+++|+.|++++++
T Consensus       327 ~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          327 ENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             SEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred             CEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence            999999864 55554  4557999999998765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=1.7e-20  Score=188.84  Aligned_cols=142  Identities=21%  Similarity=0.276  Sum_probs=114.5

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+.++..+|..- .++++.|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++++| 
T Consensus        34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-  110 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN-  110 (562)
T ss_dssp             CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-
T ss_pred             cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-
Confidence            56777777888887532 3789999999999988763  488999999999988 788876666899999999999999 


Q ss_pred             ccccccccccccccccccEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccchhhhhCCCCC--cEEEeeeecc
Q 045968          100 QGRLKLPVGMSVLGSSLELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL--RVLRMFAIGY  174 (402)
Q Consensus       100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~  174 (402)
                       .++.+|..  .+. +|++|++++|.+..++  ..+.++++|++|++++ +.++..+   +..+++|  ++|++.+|.+
T Consensus       111 -~l~~lp~~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          111 -RLQNISCC--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             -CCCEECSC--CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             -cCCccCcc--ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeecccc
Confidence             88888776  677 9999999999988764  6789999999999998 5665533   4445555  9999988876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=3e-21  Score=189.23  Aligned_cols=304  Identities=17%  Similarity=0.215  Sum_probs=206.2

Q ss_pred             cCcEEEEeCCccccC--CCccCCccceEEEccCCccc-ccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEE
Q 045968           20 KRNFLVRAGAGLKEA--PDVKGWENVRRLSLMQNQIE-TVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK   94 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~-~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~   94 (402)
                      ....+...+..+..+  ..+.++++|+.|++++|.+. .++.  ...+++|++|++++| .+..+++..|.++++|++|+
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEE
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEe
Confidence            356677777677665  35788899999999999875 4543  478999999999998 67776555599999999999


Q ss_pred             ccCCCccccc-cccc--cccccccccEEEecCCCCccc-cHh-hhcCCCCcEEEccCCCCccccchhhhhCC--------
Q 045968           95 MSNCGQGRLK-LPVG--MSVLGSSLELLDISCTGITEL-PEE-LKKLVNLKCLNLRWTGALIRIPRQLISKF--------  161 (402)
Q Consensus        95 l~~~~~~i~~-l~~~--~~~l~~~L~~L~L~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l--------  161 (402)
                      +++|  .++. .+..  +..+. +|++|++++|.+..+ |.. +..+++|++|++++| .++.++...+..+        
T Consensus       110 L~~n--~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L  185 (455)
T 3v47_A          110 LTQC--NLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLL  185 (455)
T ss_dssp             CTTS--CCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEE
T ss_pred             CCCC--CCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhcccccccccc
Confidence            9999  7875 3333  77788 999999999999876 544 789999999999994 5655443334433        


Q ss_pred             --------------------------CCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchh
Q 045968          162 --------------------------SRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA  215 (402)
Q Consensus       162 --------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  215 (402)
                                                ++|++|++.+|.+...            ....+......++|+.|.++.+....
T Consensus       186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~------------~~~~~~~~~~~~~L~~L~l~~~~~~~  253 (455)
T 3v47_A          186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES------------MAKRFFDAIAGTKIQSLILSNSYNMG  253 (455)
T ss_dssp             ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH------------HHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred             ccccCcccccchhhccccccccccccceeeeEecCCCccccc------------chhhhhccccccceeeEeeccccccc
Confidence                                      4555555555544211            01111122223555566554321110


Q ss_pred             h----------HhhhhhhhhcccceeeEeccc--------------eeeeEeccccccccCCCCc-cccccccEEecccc
Q 045968          216 L----------QILLSSNKLKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLC  270 (402)
Q Consensus       216 ~----------~~~~~~~~~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~  270 (402)
                      .          ....-.......|+.|++++|              +|++|+++++......+.. ..+++|+.|++++|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  333 (455)
T 3v47_A          254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN  333 (455)
T ss_dssp             CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence            0          000000001235666666555              6777777777665544421 16899999999999


Q ss_pred             cCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCc-cCCCCccE
Q 045968          271 HKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKP-LPFTRLKE  347 (402)
Q Consensus       271 ~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~-~~~~~L~~  347 (402)
                       .++.++  .+..+++|++|++++|.. +.+.           ...+..+++|++|+++++ .++.++... ..+++|++
T Consensus       334 -~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          334 -FLGSIDSRMFENLDKLEVLDLSYNHI-RALG-----------DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             -CCCEECGGGGTTCTTCCEEECCSSCC-CEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred             -ccCCcChhHhcCcccCCEEECCCCcc-cccC-----------hhhccccccccEEECCCC-ccccCCHhHhccCCcccE
Confidence             677763  577899999999999864 3321           246788999999999985 676766543 56899999


Q ss_pred             EEecCCC
Q 045968          348 MAVLGCD  354 (402)
Q Consensus       348 L~i~~c~  354 (402)
                      |++++++
T Consensus       400 L~l~~N~  406 (455)
T 3v47_A          400 IWLHTNP  406 (455)
T ss_dssp             EECCSSC
T ss_pred             EEccCCC
Confidence            9998764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=4.2e-21  Score=180.30  Aligned_cols=263  Identities=19%  Similarity=0.262  Sum_probs=176.9

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~  120 (402)
                      +++.++++++.++.+|... .++++.|++++| .+..++...|..+++|++|++++|  .++.+ |..+..+. +|++|+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN--KISKISPGAFAPLV-KLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS--CCCCBCTTTTTTCT-TCCEEE
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC--cCCeeCHHHhcCCC-CCCEEE
Confidence            6788888888887776532 367888888887 777777766888888888888888  77776 67777777 888888


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL  200 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  200 (402)
                      +++|.+..+|..+.  ++|++|++++ +.++.++...+.++++|++|++.++.+..             .......+..+
T Consensus       107 Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l  170 (330)
T 1xku_A          107 LSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGM  170 (330)
T ss_dssp             CCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGC
T ss_pred             CCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCC
Confidence            88888888776654  7888888888 57777776668888888888888877642             11223456678


Q ss_pred             CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc--c
Q 045968          201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--F  278 (402)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~  278 (402)
                      ++|+.|.++.+....++.   .  ..+.|+.|++++|.++.+....        .. .+++|+.|+++++ .++.++  .
T Consensus       171 ~~L~~L~l~~n~l~~l~~---~--~~~~L~~L~l~~n~l~~~~~~~--------~~-~l~~L~~L~Ls~n-~l~~~~~~~  235 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQ---G--LPPSLTELHLDGNKITKVDAAS--------LK-GLNNLAKLGLSFN-SISAVDNGS  235 (330)
T ss_dssp             TTCCEEECCSSCCCSCCS---S--CCTTCSEEECTTSCCCEECTGG--------GT-TCTTCCEEECCSS-CCCEECTTT
T ss_pred             CCcCEEECCCCccccCCc---c--ccccCCEEECCCCcCCccCHHH--------hc-CCCCCCEEECCCC-cCceeChhh
Confidence            888888887665443321   1  1134555555444333321110        12 5677888888877 566553  4


Q ss_pred             cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCcc-------CCCCccEEEec
Q 045968          279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPL-------PFTRLKEMAVL  351 (402)
Q Consensus       279 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~-------~~~~L~~L~i~  351 (402)
                      +..+++|++|++++|.. ..++            ..+..+++|+.|+++++ .++.++....       ..+.|+.|++.
T Consensus       236 ~~~l~~L~~L~L~~N~l-~~lp------------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~  301 (330)
T 1xku_A          236 LANTPHLRELHLNNNKL-VKVP------------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF  301 (330)
T ss_dssp             GGGSTTCCEEECCSSCC-SSCC------------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             ccCCCCCCEEECCCCcC-ccCC------------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEee
Confidence            66778888888888643 2332            24567788888888774 3554443221       24677778777


Q ss_pred             CCC
Q 045968          352 GCD  354 (402)
Q Consensus       352 ~c~  354 (402)
                      +.+
T Consensus       302 ~N~  304 (330)
T 1xku_A          302 SNP  304 (330)
T ss_dssp             SSS
T ss_pred             cCc
Confidence            655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=2.2e-21  Score=202.70  Aligned_cols=268  Identities=15%  Similarity=0.181  Sum_probs=163.2

Q ss_pred             CCCCccceEeccccccccc------------------cchHHhc--cCCCCCEEEccCCCcccc-ccccccccccccccE
Q 045968           60 PTCPHLLTLFLDFNQELEM------------------IADGFFQ--LMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLEL  118 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~------------------~~~~~~~--~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~  118 (402)
                      ..+++|++|++++| .+..                  +|.. +.  ++++|++|++++|  .+. .+|..++.+. +|++
T Consensus       445 ~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N--~l~~~iP~~l~~L~-~L~~  519 (876)
T 4ecn_A          445 QRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNC--PNMTQLPDFLYDLP-ELQS  519 (876)
T ss_dssp             GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESC--TTCCSCCGGGGGCS-SCCE
T ss_pred             hcCCCCCEEECcCC-cCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCC--CCCccChHHHhCCC-CCCE
Confidence            57788888888888 5555                  6666 45  8888888888888  544 5687888888 8888


Q ss_pred             EEecCCC-Ccc--ccHhhhcCC-------CCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCccccc
Q 045968          119 LDISCTG-ITE--LPEELKKLV-------NLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLF  187 (402)
Q Consensus       119 L~L~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (402)
                      |++++|. +..  +|..+..++       +|++|++++ +.++.+|. ..+.++++|++|++.+|.+...          
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l----------  588 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNKVRHL----------  588 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTSCCCBC----------
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCCCcccc----------
Confidence            8888887 763  777766655       888888888 46668886 2388888888888888877421          


Q ss_pred             CCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhccc-ceeeEeccc---------------eeeeEecccccccc
Q 045968          188 GGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSC-IRSLCLDGF---------------ELEELKIDYTEIVR  251 (402)
Q Consensus       188 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~---------------~L~~L~i~~~~~~~  251 (402)
                             ..+..+++|+.|.++.+...   .++......+. |+.|++++|               +|+.|+++++....
T Consensus       589 -------p~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          589 -------EAFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             -------CCCCTTSEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             -------hhhcCCCcceEEECcCCccc---cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence                   14556667777777655443   23333333444 777777666               26777777665543


Q ss_pred             CCCCc------cccccccEEecccccCcccCcc--cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccce
Q 045968          252 KRREP------FVFRNLHRVTMVLCHKLKDVTF--LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQR  323 (402)
Q Consensus       252 ~~~~~------~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~  323 (402)
                      .++..      ...++|+.|++++| .++.++.  +..+++|+.|++++|.. ..++...+.+..    .....+++|+.
T Consensus       659 ~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~----~~l~nl~~L~~  732 (876)
T 4ecn_A          659 EGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKD----GNYKNTYLLTT  732 (876)
T ss_dssp             TSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTT----SCCTTGGGCCE
T ss_pred             ccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcC-CccChHHhcccc----ccccccCCccE
Confidence            32211      02346777777776 5666542  23567777777777533 233221111000    01122335555


Q ss_pred             eecCccccccccccCcc--CCCCccEEEecCCCCCCCCCC
Q 045968          324 LNLEDLPNLESIYWKPL--PFTRLKEMAVLGCDQLEKLPV  361 (402)
Q Consensus       324 L~l~~c~~l~~i~~~~~--~~~~L~~L~i~~c~~L~~lp~  361 (402)
                      |++++| .+..++....  .+++|+.|+++++ +++.+|.
T Consensus       733 L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~  770 (876)
T 4ecn_A          733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT  770 (876)
T ss_dssp             EECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC
T ss_pred             EECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch
Confidence            555554 3444444333  4555555555544 3444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=9.8e-21  Score=194.94  Aligned_cols=313  Identities=19%  Similarity=0.172  Sum_probs=194.2

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+..+..+|..- .+++++|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++++| 
T Consensus         7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN-   83 (680)
T ss_dssp             SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS-
T ss_pred             CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC-
Confidence            46667777888887532 2799999999999998775  478999999999998 777777777999999999999999 


Q ss_pred             cccccccc-ccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968          100 QGRLKLPV-GMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                       .++.+|. .|+.+. +|++|++++|.+..++ ..+..+++|++|++++| .++..+...+.++++|++|++.+|.+...
T Consensus        84 -~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           84 -ELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             -CCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             -ccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc
Confidence             8998875 588888 9999999999998886 45899999999999995 66665554588999999999999877532


Q ss_pred             ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhc---------------------------ccce
Q 045968          178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLK---------------------------SCIR  230 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---------------------------~~L~  230 (402)
                                   .........+++|+.|+++.+....+.  +......                           ..|+
T Consensus       161 -------------~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~  225 (680)
T 1ziw_A          161 -------------KSEELDIFANSSLKKLELSSNQIKEFS--PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR  225 (680)
T ss_dssp             -------------CHHHHGGGTTCEESEEECTTCCCCCBC--TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC
T ss_pred             -------------CHHHhhccccccccEEECCCCcccccC--hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc
Confidence                         111111223456666666544322211  1111111                           3455


Q ss_pred             eeEeccc----------------eeeeEeccccccccCCCCc-cccccccEEecccccCcccC--cccccCCCCCEEeec
Q 045968          231 SLCLDGF----------------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDV--TFLVFAPNLKSLDLD  291 (402)
Q Consensus       231 ~L~l~~~----------------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l--~~~~~l~~L~~L~l~  291 (402)
                      .|.++++                +|++|+++++......+.. ..+++|+.|+++++ .++.+  ..+..+++|++|+++
T Consensus       226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  304 (680)
T 1ziw_A          226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLK  304 (680)
T ss_dssp             EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECT
T ss_pred             EEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEecc
Confidence            5555444                1555555544443322211 13455555555555 33332  134455555555555


Q ss_pred             CCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccc-cCccCCCCccEEEecCCC-CCCCCC
Q 045968          292 GCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIY-WKPLPFTRLKEMAVLGCD-QLEKLP  360 (402)
Q Consensus       292 ~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~i~~c~-~L~~lp  360 (402)
                      ++..-..+.......   -....+..+++|+.|+++++. +..+. .....+++|++|++++|. .++.++
T Consensus       305 ~~~~~~~~~~~~lp~---i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~  371 (680)
T 1ziw_A          305 RSFTKQSISLASLPK---IDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLT  371 (680)
T ss_dssp             TCBCCC------CCE---ECTTTTTTCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred             chhhhcccccccccc---cChhhcccCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcc
Confidence            432211110000000   001144566777777777653 33332 223456777777777664 244444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=1.4e-20  Score=188.81  Aligned_cols=149  Identities=19%  Similarity=0.196  Sum_probs=118.9

Q ss_pred             cCcEEEEeCCccccC--CCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968           20 KRNFLVRAGAGLKEA--PDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM   95 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l   95 (402)
                      ....+...+..+..+  ..+.++++|++|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEEC
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEEC
Confidence            346666677666665  357888999999999999988764  488999999999999 888888877999999999999


Q ss_pred             cCCCcccccc--ccccccccccccEEEecCCC-CccccH-hhhcCCCCcEEEccCCCCccc-cchhhhhCCCCCcEEEee
Q 045968           96 SNCGQGRLKL--PVGMSVLGSSLELLDISCTG-ITELPE-ELKKLVNLKCLNLRWTGALIR-IPRQLISKFSRLRVLRMF  170 (402)
Q Consensus        96 ~~~~~~i~~l--~~~~~~l~~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~  170 (402)
                      ++|  .++.+  |..++.+. +|++|++++|. +..+|. .+..+++|++|++++| .++. .|. .+..+++|++|++.
T Consensus       106 s~n--~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L~l~  180 (549)
T 2z81_A          106 MGN--PYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQ-SLKSIRDIHHLTLH  180 (549)
T ss_dssp             TTC--CCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTT-TTTTCSEEEEEEEE
T ss_pred             CCC--cccccchhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChh-hhhccccCceEecc
Confidence            999  78754  66788888 99999999987 677764 6888999999999984 5555 444 37777777777776


Q ss_pred             eecc
Q 045968          171 AIGY  174 (402)
Q Consensus       171 ~~~~  174 (402)
                      .+..
T Consensus       181 ~n~~  184 (549)
T 2z81_A          181 LSES  184 (549)
T ss_dssp             CSBS
T ss_pred             cCcc
Confidence            6554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=2.6e-21  Score=181.62  Aligned_cols=83  Identities=25%  Similarity=0.408  Sum_probs=48.5

Q ss_pred             CCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcE
Q 045968           87 MPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRV  166 (402)
Q Consensus        87 l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  166 (402)
                      .+.+++|++++|  .+..+|..++.+. +|++|++++|.+..+|..+..+++|++|++++ +.++.+|.. +.++++|++
T Consensus        80 ~~~l~~L~L~~n--~l~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~-l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSV--PLPQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPAS-IASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESS--CCSSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGG-GGGCTTCCE
T ss_pred             ccceeEEEccCC--CchhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHH-HhcCcCCCE
Confidence            355666666666  5555555555555 66666666666555555556666666666665 344555543 556666666


Q ss_pred             EEeeeecc
Q 045968          167 LRMFAIGY  174 (402)
Q Consensus       167 L~l~~~~~  174 (402)
                      |++.+|..
T Consensus       155 L~L~~n~~  162 (328)
T 4fcg_A          155 LSIRACPE  162 (328)
T ss_dssp             EEEEEETT
T ss_pred             EECCCCCC
Confidence            66666544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.86  E-value=1.3e-20  Score=198.49  Aligned_cols=305  Identities=18%  Similarity=0.175  Sum_probs=207.3

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+.....++..+|.  ..++++.|++++|.+..+..  ...+++|++|++++|..+..+++..|.++++|++|++++| 
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-   83 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence            466677788999998  55899999999999988643  4899999999999996677786666999999999999999 


Q ss_pred             cccccc-ccccccccccccEEEecCCCCcc-ccHh--hhcCCCCcEEEccCCCCccccc-hhhhhCCCCCcEEEeeeecc
Q 045968          100 QGRLKL-PVGMSVLGSSLELLDISCTGITE-LPEE--LKKLVNLKCLNLRWTGALIRIP-RQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~  174 (402)
                       .+..+ |..|+.+. +|++|++++|.+.. +|..  +.++++|++|++++| .++.++ ...+.++++|++|++.+|.+
T Consensus        84 -~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           84 -KIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             -CCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             -cCcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcC
Confidence             88877 78899999 99999999998875 4554  889999999999994 666543 23489999999999999887


Q ss_pred             cccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhh--------------------------------Hhhhhh
Q 045968          175 DRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHAL--------------------------------QILLSS  222 (402)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------------------------------~~~~~~  222 (402)
                      ...            ....+..+.. ++|+.|.++.+.....                                ..+...
T Consensus       161 ~~~------------~~~~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  227 (844)
T 3j0a_A          161 FLV------------CEHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA  227 (844)
T ss_dssp             CCC------------CSGGGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred             Cee------------CHHHcccccC-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence            542            1111221211 3444444443321110                                000000


Q ss_pred             hhhcccceeeEecc-------------------------ceeeeEeccccccccCCCCc-cccccccEEecccccCcccC
Q 045968          223 NKLKSCIRSLCLDG-------------------------FELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDV  276 (402)
Q Consensus       223 ~~~~~~L~~L~l~~-------------------------~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l  276 (402)
                      . ....+..+.+..                         .+|+.|+++++......+.. ..+++|+.|+++++ .++.+
T Consensus       228 l-~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~  305 (844)
T 3j0a_A          228 I-SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKI  305 (844)
T ss_dssp             S-CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEE
T ss_pred             c-CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCC
Confidence            0 001222222220                         14666666665554333321 15778888888877 56554


Q ss_pred             --cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccC-ccCCCCccEEEecCC
Q 045968          277 --TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK-PLPFTRLKEMAVLGC  353 (402)
Q Consensus       277 --~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L~i~~c  353 (402)
                        ..+..+++|++|++++|.. ..+           ....+..+++|+.|+++++ .+..++.. ...+++|+.|+++++
T Consensus       306 ~~~~~~~l~~L~~L~Ls~N~l-~~~-----------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          306 ADEAFYGLDNLQVLNLSYNLL-GEL-----------YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CTTTTTTCSSCCEEEEESCCC-SCC-----------CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             ChHHhcCCCCCCEEECCCCCC-Ccc-----------CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence              2566778888888888653 222           1236678888999999886 45555443 345789999999876


Q ss_pred             CCCCCCCC
Q 045968          354 DQLEKLPV  361 (402)
Q Consensus       354 ~~L~~lp~  361 (402)
                       +++.++.
T Consensus       373 -~l~~i~~  379 (844)
T 3j0a_A          373 -ALTTIHF  379 (844)
T ss_dssp             -CSCCCSS
T ss_pred             -CCCcccC
Confidence             4565543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=8.3e-21  Score=191.27  Aligned_cols=335  Identities=19%  Similarity=0.175  Sum_probs=227.8

Q ss_pred             CcEEEEeCCccccCC--CccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEcc
Q 045968           21 RNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMS   96 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~   96 (402)
                      ...+......+..++  .+.++++|+.|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|+++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccccc
Confidence            456666666666654  57888999999999999888764  378999999999988 7777776668999999999999


Q ss_pred             CCCcccccccc-ccccccccccEEEecCCCCcc--ccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCC---------
Q 045968           97 NCGQGRLKLPV-GMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL---------  164 (402)
Q Consensus        97 ~~~~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L---------  164 (402)
                      +|  .++.++. .++.+. +|++|++++|.+..  +|..+.++++|++|++++| .++.++...+..+++|         
T Consensus       109 ~n--~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          109 ET--NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             TS--CCCCSTTCSCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred             cc--ccccCCCccccccc-cccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhccc
Confidence            99  8887754 577888 99999999998875  6788888999999998884 5554433223333333         


Q ss_pred             --------------------------------------------------------------------------------
Q 045968          165 --------------------------------------------------------------------------------  164 (402)
Q Consensus       165 --------------------------------------------------------------------------------  164 (402)
                                                                                                      
T Consensus       185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l  264 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL  264 (570)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred             CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence                                                                                            


Q ss_pred             --------------------cEEEeeeecccccccCCCcc-----cc---------------------cCCcchhhHhhh
Q 045968          165 --------------------RVLRMFAIGYDRFHEAPEDS-----VL---------------------FGGGEVLIQELL  198 (402)
Q Consensus       165 --------------------~~L~l~~~~~~~~~~~~~~~-----~~---------------------~~~~~~~~~~l~  198 (402)
                                          ++|++.++.+...+..+.+.     .+                     ..+.........
T Consensus       265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~  344 (570)
T 2z63_A          265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV  344 (570)
T ss_dssp             EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred             hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence                                33333332222111000000     00                     000000000015


Q ss_pred             cCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-------------eeeeEeccccccccCCCC--cccccccc
Q 045968          199 GLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-------------ELEELKIDYTEIVRKRRE--PFVFRNLH  263 (402)
Q Consensus       199 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------~L~~L~i~~~~~~~~~~~--~~~~~~L~  263 (402)
                      .+++|+.|+++.+........+.....+++|+.|++++|             +|++|+++++......+.  -..+++|+
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  424 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  424 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence            789999999987665443222333445668999998887             678888888776555442  12689999


Q ss_pred             EEecccccCcccC--cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc-ccCcc
Q 045968          264 RVTMVLCHKLKDV--TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI-YWKPL  340 (402)
Q Consensus       264 ~L~l~~~~~l~~l--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i-~~~~~  340 (402)
                      .|++++| .++..  ..+..+++|++|++++|.....           ..+..+..+++|+.|++++|. +..+ +....
T Consensus       425 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  491 (570)
T 2z63_A          425 YLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN  491 (570)
T ss_dssp             EEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGG-----------EECSCCTTCTTCCEEECTTSC-CCEECTTTTT
T ss_pred             EEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccc-----------cchhhhhcccCCCEEECCCCc-cccCChhhhh
Confidence            9999999 55543  3577899999999999875422           122467889999999999974 5444 55556


Q ss_pred             CCCCccEEEecCCCCCCCCCCCCCCCCCCeeEEE
Q 045968          341 PFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIR  374 (402)
Q Consensus       341 ~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~~  374 (402)
                      .+++|++|++++| +++.+|........+++.+.
T Consensus       492 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          492 SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEE
Confidence            7899999999987 68888755433335666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=186.10  Aligned_cols=174  Identities=22%  Similarity=0.251  Sum_probs=113.2

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      .........+..+|..- .++++.|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++++| 
T Consensus        34 ~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-  110 (353)
T 2z80_A           34 GICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-  110 (353)
T ss_dssp             SEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             eEeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-
Confidence            34444555666665422 2467777777777776654  366777777777776 666665555777777777777777 


Q ss_pred             ccccccccc-cccccccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968          100 QGRLKLPVG-MSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       100 ~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                       .++.++.. +..+. +|++|++++|.+..+|.  .+..+++|++|++++|+.++.++...+.++++|++|++.+|.+..
T Consensus       111 -~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          111 -YLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             -CCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             -cCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence             67766544 56666 77777777777777665  466777777777777555666655446777777777777776532


Q ss_pred             cccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchh
Q 045968          177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHA  215 (402)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  215 (402)
                                     .....+..+++|+.|+++.+....
T Consensus       189 ---------------~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          189 ---------------YEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             ---------------ECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             ---------------cCHHHHhccccCCeecCCCCcccc
Confidence                           123345566677777777655433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=2e-20  Score=186.57  Aligned_cols=120  Identities=20%  Similarity=0.150  Sum_probs=95.7

Q ss_pred             cCcEEEEeCCccccCC--CccCCccceEEEccCCcccccC--CCCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968           20 KRNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVS--EVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM   95 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l   95 (402)
                      ....+......+..++  .+.++++|+.|++++|.+..++  ....+++|++|++++| .+..+|..   .+++|++|++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~L   97 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH---PTVNLKHLDL   97 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC---CCCCCSEEEC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc---ccCCccEEec
Confidence            3466677777776664  4778889999999999988873  3478999999999998 77788774   7899999999


Q ss_pred             cCCCccccc--cccccccccccccEEEecCCCCccccHhhhcCCCC--cEEEccCCC
Q 045968           96 SNCGQGRLK--LPVGMSVLGSSLELLDISCTGITELPEELKKLVNL--KCLNLRWTG  148 (402)
Q Consensus        96 ~~~~~~i~~--l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~  148 (402)
                      ++|  .++.  +|..++.+. +|++|++++|.+..  ..+..+++|  +.|++.+|.
T Consensus        98 ~~N--~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           98 SFN--AFDALPICKEFGNMS-QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             CSS--CCSSCCCCGGGGGCT-TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred             cCC--ccccccchhhhccCC-cceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence            999  7875  467888888 99999999998875  346667777  888888753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=7.7e-21  Score=178.40  Aligned_cols=221  Identities=21%  Similarity=0.267  Sum_probs=156.4

Q ss_pred             CCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCc
Q 045968           61 TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLK  140 (402)
Q Consensus        61 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~  140 (402)
                      ..++++.|++++| .+..+|.. +..+++|++|++++|  .++.+|..++.+. +|++|++++|.+..+|..+..+++|+
T Consensus        79 ~~~~l~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~n--~l~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA--GLMELPDTMQQFA-GLETLTLARNPLRALPASIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESS-CCSSCCSC-GGGGTTCSEEEEESS--CCCCCCSCGGGGT-TCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred             cccceeEEEccCC-CchhcChh-hhhCCCCCEEECCCC--CccchhHHHhccC-CCCEEECCCCccccCcHHHhcCcCCC
Confidence            4588999999998 78888887 777999999999999  8888899999998 99999999999999999999999999


Q ss_pred             EEEccCCCCccccchhhhh---------CCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEec
Q 045968          141 CLNLRWTGALIRIPRQLIS---------KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLG  211 (402)
Q Consensus       141 ~L~l~~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  211 (402)
                      +|++++|+....+|.. +.         ++++|++|++.+|.+..                ....+..+++|+.|+++++
T Consensus       154 ~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------lp~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          154 ELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRS----------------LPASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             EEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCC----------------CCGGGGGCTTCCEEEEESS
T ss_pred             EEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCc----------------chHhhcCCCCCCEEEccCC
Confidence            9999998888888864 43         36677777777666532                1123455556666665543


Q ss_pred             CchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc-ccccCCCCCEEee
Q 045968          212 SYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDL  290 (402)
Q Consensus       212 ~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l  290 (402)
                      .                          +..          .++....+++|+.|++++|.....++ .+..+++|++|++
T Consensus       217 ~--------------------------l~~----------l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          217 P--------------------------LSA----------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             C--------------------------CCC----------CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             C--------------------------CCc----------CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            2                          111          01111156677777777764444443 4566677777777


Q ss_pred             cCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEec
Q 045968          291 DGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVL  351 (402)
Q Consensus       291 ~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~  351 (402)
                      ++|.....++            ..+..+++|+.|++++|+.+..++.....+++|+.+++.
T Consensus       261 ~~n~~~~~~p------------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          261 KDCSNLLTLP------------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             TTCTTCCBCC------------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCCCchhhcc------------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            7766554433            245566677777777776666666666666666666664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=2.8e-21  Score=201.54  Aligned_cols=321  Identities=19%  Similarity=0.154  Sum_probs=197.5

Q ss_pred             CcEEEEeCCcccc-CCCccCCccceEEEccCCcccc-cC-CCCCCCccceEeccccccccccchHHhccCCCCCEEEccC
Q 045968           21 RNFLVRAGAGLKE-APDVKGWENVRRLSLMQNQIET-VS-EVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN   97 (402)
Q Consensus        21 ~~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~   97 (402)
                      ...+......+.. +|.+..+++|+.|++++|.+.. ++ ....+++|++|++++|.-...++.  . .+++|++|++++
T Consensus       202 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~L~~  278 (768)
T 3rgz_A          202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQYLSLAE  278 (768)
T ss_dssp             CCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCEEECCS
T ss_pred             CCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-ccCCCCEEECcC
Confidence            4555555555543 4667888899999999998774 23 347888899999988833333433  2 778888888888


Q ss_pred             CCcccc-ccccccccc-cccccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968           98 CGQGRL-KLPVGMSVL-GSSLELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus        98 ~~~~i~-~l~~~~~~l-~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      |  .+. .+|..+... . +|++|++++|.+. .+|..+..+++|++|++++|.....+|...+.++++|++|++.+|.+
T Consensus       279 n--~l~~~ip~~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          279 N--KFTGEIPDFLSGACD-TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             S--EEEESCCCCSCTTCT-TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             C--ccCCccCHHHHhhcC-cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            8  776 567766654 5 8888888888776 56777888888888888885333367765578888888888888766


Q ss_pred             ccc-ccCC-------CcccccCC--cchhhHhhhc--CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc-----
Q 045968          175 DRF-HEAP-------EDSVLFGG--GEVLIQELLG--LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF-----  237 (402)
Q Consensus       175 ~~~-~~~~-------~~~~~~~~--~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----  237 (402)
                      ... +..+       ...+++.+  .......+..  +++|+.|.++.+....  .++.....++.|+.|++++|     
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~  433 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLSGT  433 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--ECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--ccCHHHhcCCCCCEEECcCCcccCc
Confidence            421 0000       00001000  0001111212  4455555555433221  12223334456666666665     


Q ss_pred             ---------eeeeEeccccccccCCCCc-cccccccEEecccccCcc-cCc-ccccCCCCCEEeecCCcchHHHhhcCCC
Q 045968          238 ---------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLK-DVT-FLVFAPNLKSLDLDGCDAMEEIISVGKF  305 (402)
Q Consensus       238 ---------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~-~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~  305 (402)
                               +|++|+++++......+.. ..+++|+.|++++| .++ .++ .+..+++|++|++++|.....++     
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-----  507 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-----  507 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-----
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCC-----
Confidence                     5666666666554444331 14667777777776 444 333 56667777777777765432222     


Q ss_pred             CCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCCC
Q 045968          306 AETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVD  362 (402)
Q Consensus       306 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~  362 (402)
                             ..++.+++|+.|++++|.-...++.....+++|+.|++++|+--..+|..
T Consensus       508 -------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~  557 (768)
T 3rgz_A          508 -------KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA  557 (768)
T ss_dssp             -------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred             -------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence                   35567788888888887655566666667788888888777543355543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=4.6e-20  Score=189.89  Aligned_cols=152  Identities=20%  Similarity=0.225  Sum_probs=124.9

Q ss_pred             cCcEEEEeCCccccCCC--ccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968           20 KRNFLVRAGAGLKEAPD--VKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM   95 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l   95 (402)
                      ....+...+..+..++.  +.++++|+.|++++|.+..++..  ..+++|++|++++| .+..++...|..+++|++|++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEEC
Confidence            45667777777777753  78889999999999998887543  68999999999998 888888877999999999999


Q ss_pred             cCCCccccccc-cccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhhh--CCCCCcEEEeee
Q 045968           96 SNCGQGRLKLP-VGMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLIS--KFSRLRVLRMFA  171 (402)
Q Consensus        96 ~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~  171 (402)
                      ++|  .+..++ ..++.+. +|++|++++|.+...+ ..+.++++|++|++++ +.++.++...+.  .+++|++|++.+
T Consensus       105 ~~n--~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          105 MSN--SIQKIKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             CSS--CCCCCCSCTTTTCT-TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             CCC--ccCccChhHccccC-CCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhccccccccEEECCC
Confidence            999  888875 6788888 9999999999887654 4578899999999999 567776654343  568999999998


Q ss_pred             ecccc
Q 045968          172 IGYDR  176 (402)
Q Consensus       172 ~~~~~  176 (402)
                      |.+..
T Consensus       181 n~l~~  185 (680)
T 1ziw_A          181 NQIKE  185 (680)
T ss_dssp             CCCCC
T ss_pred             Ccccc
Confidence            87654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.84  E-value=3.1e-19  Score=179.67  Aligned_cols=119  Identities=24%  Similarity=0.245  Sum_probs=97.9

Q ss_pred             cCcEEEEeCCccccCC--CccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEc
Q 045968           20 KRNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKM   95 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l   95 (402)
                      ....+......+..++  .+.++++|+.|++++|.+..++.  ...+++|++|++++| .+..+|..   .+++|++|++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~L  128 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHLDL  128 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEEEC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEEEC
Confidence            4567777777777775  58888999999999999998743  378999999999999 78888875   8999999999


Q ss_pred             cCCCcccccc--ccccccccccccEEEecCCCCccccHhhhcCCCC--cEEEccCC
Q 045968           96 SNCGQGRLKL--PVGMSVLGSSLELLDISCTGITELPEELKKLVNL--KCLNLRWT  147 (402)
Q Consensus        96 ~~~~~~i~~l--~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~  147 (402)
                      ++|  .++.+  |..++.+. +|++|++++|.+...  .+..+++|  +.|++++|
T Consensus       129 s~N--~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          129 SFN--DFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CSS--CCSBCCCCGGGGGCT-TCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEES
T ss_pred             CCC--CccccCchHhhcccC-cccEEecCCCccccC--chhhhhhceeeEEEeecc
Confidence            999  88876  46888898 999999999988753  34555566  99998885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=3.6e-19  Score=181.23  Aligned_cols=147  Identities=22%  Similarity=0.230  Sum_probs=123.8

Q ss_pred             EEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      .+...+.++..+|.-- ..++++|++++|.++.++.  +..+++|++|++++| .+..+++.+|.++++|++|++++|  
T Consensus        35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N--  110 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN--  110 (635)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC--
T ss_pred             EEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC--
Confidence            3445567888887422 2589999999999999875  488999999999999 889998888999999999999999  


Q ss_pred             cccccc-cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCcccc--chhhhhCCCCCcEEEeeeecccc
Q 045968          101 GRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRI--PRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       101 ~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                      .++.+| ..|..+. +|++|++++|.+..+|.. ++++++|++|++++ +.++.+  |. .+..+++|++|++.+|.+..
T Consensus       111 ~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          111 PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCG-GGGGCTTCCEEECCSSCCCE
T ss_pred             cCCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCch-hhccchhhhhhcccCccccc
Confidence            899886 4578888 999999999999988765 88999999999999 566653  44 37889999999999887643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.83  E-value=2.3e-20  Score=173.98  Aligned_cols=128  Identities=20%  Similarity=0.275  Sum_probs=84.3

Q ss_pred             ccceEEEccCCcccc---cCC-CCCCCccceEeccc-ccccc-ccchHHhccCCCCCEEEccCCCcccc-cccccccccc
Q 045968           41 ENVRRLSLMQNQIET---VSE-VPTCPHLLTLFLDF-NQELE-MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLG  113 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~---~~~-~~~~~~L~~L~l~~-~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~  113 (402)
                      .+++.|+++++.+..   ++. ...+++|++|++++ | .+. .+|.. +..+++|++|++++|  .++ .+|..+..+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHT--NVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEE--CCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCC--eeCCcCCHHHhCCC
Confidence            467777777776653   443 26677777777774 4 443 34444 677777777777777  666 4566677666


Q ss_pred             ccccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCcc-ccchhhhhCCC-CCcEEEeeeeccc
Q 045968          114 SSLELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALI-RIPRQLISKFS-RLRVLRMFAIGYD  175 (402)
Q Consensus       114 ~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~-~L~~L~l~~~~~~  175 (402)
                       +|++|++++|.+. .+|..+..+++|++|++++| .++ .+|.. +..++ +|++|++.+|.+.
T Consensus       126 -~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          126 -TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             -TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred             -CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeee
Confidence             7777777777666 56666777777777777773 444 55554 66666 7777777776653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=8.8e-20  Score=172.94  Aligned_cols=273  Identities=18%  Similarity=0.187  Sum_probs=195.6

Q ss_pred             CccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccE
Q 045968           40 WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLEL  118 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~  118 (402)
                      ++.....+.+++.++.+|.. -.++|++|++++| .+..++...+.++++|++|++++|  .++.+ +..+..+. +|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN--GINTIEEDSFSSLG-SLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCT-TCCE
T ss_pred             CCCCeEeeCCCCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC--ccCccCHhhcCCCC-CCCE
Confidence            34445578888888888764 3369999999998 788888866999999999999999  88887 56688888 9999


Q ss_pred             EEecCCCCccccHh-hhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHh
Q 045968          119 LDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQE  196 (402)
Q Consensus       119 L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (402)
                      |++++|.+..+|.. +..+++|++|++++ +.++.+|. ..+.++++|++|++.+|...              .......
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~--------------~~~~~~~  169 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTF--------------TKIQRKD  169 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSC--------------CEECTTT
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccc--------------cccCHHH
Confidence            99999999999877 88999999999999 57888876 45889999999999998532              1222345


Q ss_pred             hhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCccc
Q 045968          197 LLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKD  275 (402)
Q Consensus       197 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~  275 (402)
                      +..+++|+.|+++.+......  +......+          +|++|+++++.....+... ..+++|+.|+++++ .++.
T Consensus       170 ~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~----------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~  236 (353)
T 2z80_A          170 FAGLTFLEELEIDASDLQSYE--PKSLKSIQ----------NVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDT  236 (353)
T ss_dssp             TTTCCEEEEEEEEETTCCEEC--TTTTTTCS----------EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTT
T ss_pred             ccCCCCCCEEECCCCCcCccC--HHHHhccc----------cCCeecCCCCccccchhhhhhhcccccEEECCCC-cccc
Confidence            678899999999977544321  22222233          4555555555432211111 14788999999988 5665


Q ss_pred             Cc-----ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCc-cCCCCccEEE
Q 045968          276 VT-----FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKP-LPFTRLKEMA  349 (402)
Q Consensus       276 l~-----~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~-~~~~~L~~L~  349 (402)
                      ++     .....+.++.++++++..-..-..        .....+..+++|+.|+++++ .++.++... ..+++|++|+
T Consensus       237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~--------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~  307 (353)
T 2z80_A          237 FHFSELSTGETNSLIKKFTFRNVKITDESLF--------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIW  307 (353)
T ss_dssp             CCCC------CCCCCCEEEEESCBCCHHHHH--------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccchhhccccccccccCcchh--------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEE
Confidence            42     223456788888887654322110        11124567889999999986 566777654 5688899998


Q ss_pred             ecCCC
Q 045968          350 VLGCD  354 (402)
Q Consensus       350 i~~c~  354 (402)
                      +++++
T Consensus       308 L~~N~  312 (353)
T 2z80_A          308 LHTNP  312 (353)
T ss_dssp             CCSSC
T ss_pred             eeCCC
Confidence            88774

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=1.5e-19  Score=176.47  Aligned_cols=238  Identities=21%  Similarity=0.239  Sum_probs=170.1

Q ss_pred             EEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      .+...+.++..+|.-- ..+++.|++++|.+..++.  ...+++|++|++++| .+..++...|.++++|++|++++|  
T Consensus        47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n--  122 (440)
T 3zyj_A           47 KVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN--  122 (440)
T ss_dssp             EEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS--
T ss_pred             EEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC--
Confidence            4555666777777532 2688889999998887753  378889999999988 777777777888999999999998  


Q ss_pred             ccccccc-ccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccc
Q 045968          101 GRLKLPV-GMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH  178 (402)
Q Consensus       101 ~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  178 (402)
                      .++.++. .+..+. +|++|++++|.+..++. .+..+++|++|++.+|+.+..++...+.++++|++|++.+|.+..  
T Consensus       123 ~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--  199 (440)
T 3zyj_A          123 RLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--  199 (440)
T ss_dssp             CCSSCCTTTSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred             cCCeeCHhHhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence            7887754 577777 89999999998887766 477888999999988888888887668889999999998887753  


Q ss_pred             cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccc
Q 045968          179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFV  258 (402)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~  258 (402)
                                     +..+..+++|+.|+++++....+.  +......++|+.|.+++|.++.+....        .. .
T Consensus       200 ---------------~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~-~  253 (440)
T 3zyj_A          200 ---------------IPNLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQVIERNA--------FD-N  253 (440)
T ss_dssp             ---------------CCCCTTCSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTS--------ST-T
T ss_pred             ---------------ccccCCCcccCEEECCCCccCccC--hhhhccCccCCEEECCCCceeEEChhh--------hc-C
Confidence                           124667788888888765443321  122233445555555554444332111        12 5


Q ss_pred             cccccEEecccccCcccCc--ccccCCCCCEEeecCCc
Q 045968          259 FRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCD  294 (402)
Q Consensus       259 ~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~  294 (402)
                      +++|+.|+++++ .++.++  .+..+++|+.|++++|+
T Consensus       254 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          254 LQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            677888888887 666664  35667888888887765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.6e-19  Score=176.85  Aligned_cols=239  Identities=21%  Similarity=0.219  Sum_probs=170.2

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+.++..+|.-- .++++.|++++|.+..++.  ...+++|++|++++| .+..+++..|.++++|++|++++| 
T Consensus        57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-  133 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-  133 (452)
T ss_dssp             CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-
Confidence            34555666777776422 2688899999998887643  378899999999988 777777666888999999999998 


Q ss_pred             cccccccc-ccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968          100 QGRLKLPV-GMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                       .++.++. .+..+. +|++|++++|.+..+|. .+..+++|+.|++++|+.++.++...+.++++|++|++.+|.+.. 
T Consensus       134 -~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          134 -WLTVIPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             -CCSBCCTTTSSSCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             -cCCccChhhhcccC-CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence             7887754 467777 89999999998888776 477888999999988888888887668888999999998887752 


Q ss_pred             ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcc
Q 045968          178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPF  257 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~  257 (402)
                                      +..+..+++|+.|+++++....+.  +......++|+.|.+++|.+..+....        .. 
T Consensus       211 ----------------~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~-  263 (452)
T 3zyi_A          211 ----------------MPNLTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSLIERNA--------FD-  263 (452)
T ss_dssp             ----------------CCCCTTCTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTTSCCCEECTTT--------TT-
T ss_pred             ----------------cccccccccccEEECcCCcCcccC--cccccCccCCCEEEeCCCcCceECHHH--------hc-
Confidence                            124667788888888766544331  122233345555555544443332111        12 


Q ss_pred             ccccccEEecccccCcccCc--ccccCCCCCEEeecCCc
Q 045968          258 VFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCD  294 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~  294 (402)
                      .+++|+.|+++++ .++.++  .+..+++|+.|++++|+
T Consensus       264 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          264 GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            5778888888887 676664  35667888888888765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.82  E-value=1.8e-18  Score=169.33  Aligned_cols=282  Identities=20%  Similarity=0.201  Sum_probs=158.7

Q ss_pred             CcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      ...+...+..+..+|.+  .++++.|++++|.++.+|..  .++|++|++++| .+..++..    .++|++|++++|  
T Consensus        73 l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n--  141 (454)
T 1jl5_A           73 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNN--  141 (454)
T ss_dssp             CSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSS--
T ss_pred             CCEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCC--
Confidence            45677777777777664  36888888888888776643  467777777776 55554431    157777777777  


Q ss_pred             cccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccC
Q 045968          101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA  180 (402)
Q Consensus       101 ~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  180 (402)
                      .++.+| .++.+. +|++|++++|.+..+|..+   .+|++|++++ +.++.+|.  +.++++|++|++.+|.+...+..
T Consensus       142 ~l~~lp-~~~~l~-~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~-n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~  213 (454)
T 1jl5_A          142 QLEKLP-ELQNSS-FLKIIDVDNNSLKKLPDLP---PSLEFIAAGN-NQLEELPE--LQNLPFLTAIYADNNSLKKLPDL  213 (454)
T ss_dssp             CCSSCC-CCTTCT-TCCEEECCSSCCSCCCCCC---TTCCEEECCS-SCCSSCCC--CTTCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCCCc-ccCCCC-CCCEEECCCCcCcccCCCc---ccccEEECcC-CcCCcCcc--ccCCCCCCEEECCCCcCCcCCCC
Confidence            677666 466676 7777777777777666433   4777777777 46666663  67777777777777766532111


Q ss_pred             C---CcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc----------eeeeEecccc
Q 045968          181 P---EDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF----------ELEELKIDYT  247 (402)
Q Consensus       181 ~---~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------~L~~L~i~~~  247 (402)
                      .   ....++.+....+..+..+++|+.|+++.+....++.      ....|+.|++++|          +|++|+++++
T Consensus       214 ~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccccCcccCcCCEEECcCC
Confidence            1   1112222221223346667778888877654443221      2246666666665          3555555555


Q ss_pred             ccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecC
Q 045968          248 EIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLE  327 (402)
Q Consensus       248 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  327 (402)
                      .......   ..++|+.|+++++ .++.++.+  .++|++|++++|.. +.++               ..+++|+.|+++
T Consensus       288 ~l~~l~~---~~~~L~~L~l~~N-~l~~i~~~--~~~L~~L~Ls~N~l-~~lp---------------~~~~~L~~L~L~  345 (454)
T 1jl5_A          288 IFSGLSE---LPPNLYYLNASSN-EIRSLCDL--PPSLEELNVSNNKL-IELP---------------ALPPRLERLIAS  345 (454)
T ss_dssp             CCSEESC---CCTTCCEEECCSS-CCSEECCC--CTTCCEEECCSSCC-SCCC---------------CCCTTCCEEECC
T ss_pred             ccCcccC---cCCcCCEEECcCC-cCCcccCC--cCcCCEEECCCCcc-cccc---------------ccCCcCCEEECC
Confidence            4432111   1245555555554 33332211  13556666655432 1111               124555666655


Q ss_pred             ccccccccccCccCCCCccEEEecCC
Q 045968          328 DLPNLESIYWKPLPFTRLKEMAVLGC  353 (402)
Q Consensus       328 ~c~~l~~i~~~~~~~~~L~~L~i~~c  353 (402)
                      ++ .+..++.   .+++|++|+++++
T Consensus       346 ~N-~l~~lp~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          346 FN-HLAEVPE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             SS-CCSCCCC---CCTTCCEEECCSS
T ss_pred             CC-ccccccc---hhhhccEEECCCC
Confidence            53 3444433   2455555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=1.3e-18  Score=163.25  Aligned_cols=288  Identities=17%  Similarity=0.120  Sum_probs=202.6

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+..+..+|... .++++.|++++|.+..++.  ...+++|++|++++| .+..+.+..|..+++|++|++++| 
T Consensus        34 ~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-  110 (330)
T 1xku_A           34 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-  110 (330)
T ss_dssp             TEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-
T ss_pred             eEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC-
Confidence            45566666777776532 3689999999999998875  488999999999998 787875555999999999999999 


Q ss_pred             ccccccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeeecccc
Q 045968          100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                       .++.+|..+.  . +|++|++++|.+..++.. +..+++|+.|++++| .++.  +....+.++++|++|++.++.+..
T Consensus       111 -~l~~l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          111 -QLKELPEKMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             -CCSBCCSSCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             -cCCccChhhc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCcccc
Confidence             8998887665  4 999999999999988764 889999999999995 5543  333448899999999999998764


Q ss_pred             cccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc
Q 045968          177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP  256 (402)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~  256 (402)
                      .+.                .  ..++|+.|+++++....+.  +......++|+.|++++|.++.+...        ...
T Consensus       186 l~~----------------~--~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~  237 (330)
T 1xku_A          186 IPQ----------------G--LPPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNG--------SLA  237 (330)
T ss_dssp             CCS----------------S--CCTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTT--------TGG
T ss_pred             CCc----------------c--ccccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChh--------hcc
Confidence            210                1  1268899999866544331  12223344555555555544433211        012


Q ss_pred             cccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc-c
Q 045968          257 FVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE-S  334 (402)
Q Consensus       257 ~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~  334 (402)
                       .+++|+.|++++| .++.++ .+..+++|++|++++|. ++.++...+.+.     ......+.|+.|++.+++--. .
T Consensus       238 -~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~-----~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          238 -NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP-----GYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             -GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS-----SCCTTSCCCSEEECCSSSSCGGG
T ss_pred             -CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc-----ccccccccccceEeecCcccccc
Confidence             6889999999999 788875 67889999999999975 444443222211     122346889999999876321 1


Q ss_pred             cc-cCccCCCCccEEEecCC
Q 045968          335 IY-WKPLPFTRLKEMAVLGC  353 (402)
Q Consensus       335 i~-~~~~~~~~L~~L~i~~c  353 (402)
                      +. .....+++|+.+++++.
T Consensus       310 i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC---
T ss_pred             cCccccccccceeEEEeccc
Confidence            21 22334678888888664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.82  E-value=1.1e-19  Score=168.69  Aligned_cols=144  Identities=24%  Similarity=0.257  Sum_probs=77.4

Q ss_pred             EEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEecccccccccc---chHHhccCCCCCEEEccCC
Q 045968           24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMI---ADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~---~~~~~~~l~~L~~L~l~~~   98 (402)
                      +...+.++..+|.- -.+++++|++++|.+..++..  ..+++|++|++++| .+..+   +.. +..+++|++|++++|
T Consensus        12 l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           12 IRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFN   88 (306)
T ss_dssp             EECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred             EEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCC
Confidence            34444455555431 124566666666666655542  45666666666655 44332   222 445566666666666


Q ss_pred             CccccccccccccccccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968           99 GQGRLKLPVGMSVLGSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus        99 ~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                        .+..+|..+..+. +|++|++++|.+..++.  .+..+++|++|++++| .++..+...+.++++|++|++.+|.+
T Consensus        89 --~i~~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           89 --GVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             --SEEEEEEEEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             --ccccChhhcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcc
Confidence              5555555555555 66666666665555543  3555666666666653 44443333355566666666655544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=1.4e-18  Score=175.76  Aligned_cols=254  Identities=20%  Similarity=0.176  Sum_probs=170.6

Q ss_pred             CcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      ...+.+.+..+..+|.... ++|+.|++++|.++.+|.  .+++|++|++++| .+..+|.    .+++|++|++++|  
T Consensus        42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N--  111 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSN--  111 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSC--
T ss_pred             CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCC--
Confidence            4567777777777765333 678888888888887776  6788888888877 6666665    5678888888888  


Q ss_pred             cccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccC
Q 045968          101 GRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA  180 (402)
Q Consensus       101 ~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  180 (402)
                      .++.+|.   .+. +|++|++++|.+..+|..   +++|++|++++ +.++.+|.    .+++|+.|++.+|.+...   
T Consensus       112 ~l~~l~~---~l~-~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~l---  176 (622)
T 3g06_A          112 PLTHLPA---LPS-GLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA----LPSELCKLWAYNNQLTSL---  176 (622)
T ss_dssp             CCCCCCC---CCT-TCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSCC---
T ss_pred             cCCCCCC---CCC-CcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCC----ccCCCCEEECCCCCCCCC---
Confidence            7777765   234 788888888888877764   47888888888 46666664    256788888887776521   


Q ss_pred             CCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccc
Q 045968          181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFR  260 (402)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~  260 (402)
                                    .  ..+++|+.|+++.+....++.      ...+          |+.|.+.++.....+.   .++
T Consensus       177 --------------~--~~~~~L~~L~Ls~N~l~~l~~------~~~~----------L~~L~L~~N~l~~l~~---~~~  221 (622)
T 3g06_A          177 --------------P--MLPSGLQELSVSDNQLASLPT------LPSE----------LYKLWAYNNRLTSLPA---LPS  221 (622)
T ss_dssp             --------------C--CCCTTCCEEECCSSCCSCCCC------CCTT----------CCEEECCSSCCSSCCC---CCT
T ss_pred             --------------c--ccCCCCcEEECCCCCCCCCCC------ccch----------hhEEECcCCcccccCC---CCC
Confidence                          1  345778888887665443322      1233          4444444444432221   357


Q ss_pred             cccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCcc
Q 045968          261 NLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPL  340 (402)
Q Consensus       261 ~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~  340 (402)
                      +|+.|++++| .++.++  ..+++|+.|++++|. ++.++               ..+++|+.|++++| .+..++....
T Consensus       222 ~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp---------------~~~~~L~~L~Ls~N-~L~~lp~~l~  281 (622)
T 3g06_A          222 GLKELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTSLP---------------MLPSGLLSLSVYRN-QLTRLPESLI  281 (622)
T ss_dssp             TCCEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCC---------------CCCTTCCEEECCSS-CCCSCCGGGG
T ss_pred             CCCEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCcCC---------------cccccCcEEeCCCC-CCCcCCHHHh
Confidence            7888888877 676666  456778888888863 33321               15677888888775 5666666666


Q ss_pred             CCCCccEEEecCCC
Q 045968          341 PFTRLKEMAVLGCD  354 (402)
Q Consensus       341 ~~~~L~~L~i~~c~  354 (402)
                      .+++|+.|++++++
T Consensus       282 ~l~~L~~L~L~~N~  295 (622)
T 3g06_A          282 HLSSETTVNLEGNP  295 (622)
T ss_dssp             GSCTTCEEECCSCC
T ss_pred             hccccCEEEecCCC
Confidence            67888888887765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=1.3e-20  Score=176.09  Aligned_cols=121  Identities=21%  Similarity=0.161  Sum_probs=58.1

Q ss_pred             ccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968           41 ENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL  118 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~  118 (402)
                      ++|+.|++++|.+..++.  ...+++|++|++++| .+..+++  +..+++|++|++++|  .++.++.    .. +|++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n--~l~~l~~----~~-~L~~  103 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN--YVQELLV----GP-SIET  103 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSS--EEEEEEE----CT-TCCE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCC--ccccccC----CC-CcCE
Confidence            345555555555554432  245555555555555 3333333  455555555555555  4444331    12 5555


Q ss_pred             EEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      |++++|.+..++..  .+++|++|++++ +.++.++...+..+++|++|++.+|.+
T Consensus       104 L~l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A          104 LHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             EECCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             EECCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCC
Confidence            55555555444322  244555555555 344444332344555555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=3.4e-19  Score=165.38  Aligned_cols=148  Identities=20%  Similarity=0.232  Sum_probs=121.1

Q ss_pred             eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc---ccccccccccccEEE
Q 045968           44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL---PVGMSVLGSSLELLD  120 (402)
Q Consensus        44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l---~~~~~~l~~~L~~L~  120 (402)
                      +.++..++.++.+|.. ..++|++|++++| .+..++..+|.++++|++|++++|  .++.+   +..+..+. +|++|+
T Consensus        10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~~-~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN--GLSFKGCCSQSDFGTT-SLKYLD   84 (306)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS--CCCEEEEEEHHHHSCS-CCCEEE
T ss_pred             CEEEcCCCCcccCCCC-CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC--ccCcccCccccccccc-ccCEEE
Confidence            4688888888888764 2379999999998 788999887899999999999999  77754   45666677 999999


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      +++|.+..+|..+..+++|++|++++ +.++.++. ..+.++++|++|++.+|.+..               .....+..
T Consensus        85 Ls~n~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~~~~~~  148 (306)
T 2z66_A           85 LSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRV---------------AFNGIFNG  148 (306)
T ss_dssp             CCSCSEEEEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCEE---------------CSTTTTTT
T ss_pred             CCCCccccChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCCc---------------cchhhccc
Confidence            99999999988899999999999999 57777764 458899999999999988742               22234667


Q ss_pred             CCCCceEEEEecC
Q 045968          200 LKYLEVLELSLGS  212 (402)
Q Consensus       200 l~~L~~L~l~~~~  212 (402)
                      +++|+.|.++++.
T Consensus       149 l~~L~~L~l~~n~  161 (306)
T 2z66_A          149 LSSLEVLKMAGNS  161 (306)
T ss_dssp             CTTCCEEECTTCE
T ss_pred             CcCCCEEECCCCc
Confidence            7888888887543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=175.19  Aligned_cols=242  Identities=19%  Similarity=0.246  Sum_probs=184.8

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~  120 (402)
                      ..+.++..+..++.+|... .++++.|++++| .+..++...|.++++|++|++++|  .++.+ +..|..+. +|++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~i~~~~~~~l~-~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGI-STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN--HIRTIEIGAFNGLA-NLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCC-CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS--CCCEECGGGGTTCS-SCCEEE
T ss_pred             CCCEEEeCCCCcCcCCCCC-CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC--cCCccChhhccCCc-cCCEEE
Confidence            3567888888888887643 378999999998 888888777999999999999999  89887 46788888 999999


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      +++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.++....              ......+..
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~  183 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLS--------------YISEGAFEG  183 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTT
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcc--------------eeCcchhhc
Confidence            999999998874 88999999999999 68888887679999999999999866542              122234678


Q ss_pred             CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCcccCc-
Q 045968          200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT-  277 (402)
Q Consensus       200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~-  277 (402)
                      +++|+.|+++.+....++.+    ....+|+.|++++|.++.+          .+.. ..+++|+.|+++++ .++.++ 
T Consensus       184 l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~n-~l~~~~~  248 (440)
T 3zyj_A          184 LSNLRYLNLAMCNLREIPNL----TPLIKLDELDLSGNHLSAI----------RPGSFQGLMHLQKLWMIQS-QIQVIER  248 (440)
T ss_dssp             CSSCCEEECTTSCCSSCCCC----TTCSSCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECTTC-CCCEECT
T ss_pred             ccccCeecCCCCcCcccccc----CCCcccCEEECCCCccCcc----------ChhhhccCccCCEEECCCC-ceeEECh
Confidence            89999999987765544322    2233444444444444333          2221 16889999999998 677763 


Q ss_pred             -ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          278 -FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       278 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                       .+..+++|++|++++|.. +.++.           ..+..+++|+.|++++++
T Consensus       249 ~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNL-TLLPH-----------DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCC-CCCCT-----------TTTSSCTTCCEEECCSSC
T ss_pred             hhhcCCCCCCEEECCCCCC-CccCh-----------hHhccccCCCEEEcCCCC
Confidence             577899999999999743 33322           356778999999999855

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=2e-19  Score=176.29  Aligned_cols=242  Identities=18%  Similarity=0.198  Sum_probs=183.3

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~  120 (402)
                      ..+.++..+..+..+|... .+++++|++++| .+..+++..|..+++|++|++++|  .++.+ +..|..+. +|++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~-~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLA-SLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCT-TCCEEE
T ss_pred             CCcEEEECCCCcCccCCCC-CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC--ccCCcChhhccCcc-cCCEEE
Confidence            3567888888888887542 378999999998 888887766999999999999999  89887 46788888 999999


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      +++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.+|....              ......+..
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~  194 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLE--------------YISEGAFEG  194 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTT
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCcc--------------ccChhhccC
Confidence            999999988876 78899999999999 68888888779999999999999865542              122234677


Q ss_pred             CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCcccC--
Q 045968          200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDV--  276 (402)
Q Consensus       200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l--  276 (402)
                      +++|+.|+++.+....++.    .....+|+.|++++|.+..          ..+.. ..+++|+.|+++++ .++.+  
T Consensus       195 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~l~~L~~L~L~~n-~l~~~~~  259 (452)
T 3zyi_A          195 LFNLKYLNLGMCNIKDMPN----LTPLVGLEELEMSGNHFPE----------IRPGSFHGLSSLKKLWVMNS-QVSLIER  259 (452)
T ss_dssp             CTTCCEEECTTSCCSSCCC----CTTCTTCCEEECTTSCCSE----------ECGGGGTTCTTCCEEECTTS-CCCEECT
T ss_pred             CCCCCEEECCCCccccccc----ccccccccEEECcCCcCcc----------cCcccccCccCCCEEEeCCC-cCceECH
Confidence            8999999998776554432    2223344455444444433          22221 16889999999998 67665  


Q ss_pred             cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          277 TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       277 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                      ..+..+++|+.|++++|. ++.++.           ..+..+++|+.|++++++
T Consensus       260 ~~~~~l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHNN-LSSLPH-----------DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTTTTCTTCCEEECCSSC-CSCCCT-----------TSSTTCTTCCEEECCSSC
T ss_pred             HHhcCCCCCCEEECCCCc-CCccCh-----------HHhccccCCCEEEccCCC
Confidence            357788999999999974 343322           356778999999999865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=8e-19  Score=164.85  Aligned_cols=287  Identities=19%  Similarity=0.163  Sum_probs=202.1

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+..+..+|... .++++.|++++|.+..++.  ...+++|++|++++| .+..+++..|..+++|++|++++| 
T Consensus        36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-  112 (332)
T 2ft3_A           36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN-  112 (332)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS-
T ss_pred             CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC-
Confidence            45566666777777533 3789999999999998854  489999999999998 788876666999999999999999 


Q ss_pred             ccccccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeeecccc
Q 045968          100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                       .++.+|..+.  . +|++|++++|.+..+|.. +..+++|++|++++ +.++.  +....+..+ +|++|++.++.+..
T Consensus       113 -~l~~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          113 -HLVEIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             -CCCSCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             -cCCccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence             8998887665  4 999999999999988765 78999999999999 46543  333346677 99999999998764


Q ss_pred             cccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC-
Q 045968          177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE-  255 (402)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~-  255 (402)
                      .+.                .+  .++|+.|+++++....+.  +......++          |++|+++++......+. 
T Consensus       187 l~~----------------~~--~~~L~~L~l~~n~i~~~~--~~~l~~l~~----------L~~L~L~~N~l~~~~~~~  236 (332)
T 2ft3_A          187 IPK----------------DL--PETLNELHLDHNKIQAIE--LEDLLRYSK----------LYRLGLGHNQIRMIENGS  236 (332)
T ss_dssp             CCS----------------SS--CSSCSCCBCCSSCCCCCC--TTSSTTCTT----------CSCCBCCSSCCCCCCTTG
T ss_pred             cCc----------------cc--cCCCCEEECCCCcCCccC--HHHhcCCCC----------CCEEECCCCcCCcCChhH
Confidence            210                11  267888888866544332  111222334          44555555444333332 


Q ss_pred             ccccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccc--
Q 045968          256 PFVFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNL--  332 (402)
Q Consensus       256 ~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l--  332 (402)
                      -..+++|+.|++++| .++.++ .+..+++|++|++++|. ++.++...+.+.     .....++.|+.|++.+++..  
T Consensus       237 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~N~~~~~  309 (332)
T 2ft3_A          237 LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV-----GFGVKRAYYNGISLFNNPVPYW  309 (332)
T ss_dssp             GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-----SCCSSSCCBSEEECCSSSSCGG
T ss_pred             hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHcccc-----ccccccccccceEeecCccccc
Confidence            116899999999998 788876 58889999999999965 444433222211     12233688999999997633  


Q ss_pred             cccccCccCCCCccEEEecCCC
Q 045968          333 ESIYWKPLPFTRLKEMAVLGCD  354 (402)
Q Consensus       333 ~~i~~~~~~~~~L~~L~i~~c~  354 (402)
                      ...+.....+++|+.+++++++
T Consensus       310 ~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          310 EVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GSCGGGGTTBCCSTTEEC----
T ss_pred             ccCcccccccchhhhhhccccc
Confidence            2222233457889999888765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=1.2e-18  Score=183.42  Aligned_cols=319  Identities=19%  Similarity=0.186  Sum_probs=214.4

Q ss_pred             cCcEEEEeCCccccC--CCccCCccceEEEccCC-cccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEE
Q 045968           20 KRNFLVRAGAGLKEA--PDVKGWENVRRLSLMQN-QIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK   94 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~l~~L~l~~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~   94 (402)
                      ....+..+...+..+  ..+..+.+|+.|++++| .+..++.  ...+++|++|++++| .+..+++..|.++++|++|+
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEE
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEee
Confidence            345666666666655  35788999999999999 4445532  488999999999999 77777666699999999999


Q ss_pred             ccCCCccccc-cccc--cccccccccEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccchhhhhCC--CCCcEE
Q 045968           95 MSNCGQGRLK-LPVG--MSVLGSSLELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIPRQLISKF--SRLRVL  167 (402)
Q Consensus        95 l~~~~~~i~~-l~~~--~~~l~~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L  167 (402)
                      +++|  .+.. ++..  +..+. +|++|++++|.+..++  ..++++++|++|++++ +.++.+....+..+  ++|+.|
T Consensus       104 Ls~n--~l~~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          104 LYFC--GLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             CTTC--CCSSCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHCSSCCC
T ss_pred             CcCC--CCCcccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCCccceE
Confidence            9999  7875 4443  78888 9999999999988653  5689999999999999 46655443336666  788999


Q ss_pred             EeeeecccccccC-------------CCcccccCC-----cchhhHhhhcCCCCceEEEEecCc------hhhHhhh-h-
Q 045968          168 RMFAIGYDRFHEA-------------PEDSVLFGG-----GEVLIQELLGLKYLEVLELSLGSY------HALQILL-S-  221 (402)
Q Consensus       168 ~l~~~~~~~~~~~-------------~~~~~~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~-~-  221 (402)
                      ++..|.+......             +...+++.+     ....+........++.+.+..+..      ..+.... . 
T Consensus       180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~  259 (844)
T 3j0a_A          180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT  259 (844)
T ss_dssp             EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred             ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence            8888876432110             000011111     000111111112334444331000      0000000 0 


Q ss_pred             -hhhhcccceeeEeccc--------------eeeeEeccccccccCCCCc-cccccccEEecccccCcccC--cccccCC
Q 045968          222 -SNKLKSCIRSLCLDGF--------------ELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDV--TFLVFAP  283 (402)
Q Consensus       222 -~~~~~~~L~~L~l~~~--------------~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l--~~~~~l~  283 (402)
                       ..-...+|+.|+++++              +|+.|+++++......+.. ..+++|+.|++++| .++.+  ..+..++
T Consensus       260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCT
T ss_pred             hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCC
Confidence             0111357888888876              7888888887775554432 16889999999998 67665  3678899


Q ss_pred             CCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCCC
Q 045968          284 NLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVD  362 (402)
Q Consensus       284 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~  362 (402)
                      +|+.|++++|.. ..+.           ...+..+++|+.|+++++ .+..++.    +++|+.|+++++ +++.+|..
T Consensus       339 ~L~~L~L~~N~i-~~~~-----------~~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~L~~L~l~~N-~l~~l~~~  399 (844)
T 3j0a_A          339 KVAYIDLQKNHI-AIIQ-----------DQTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLSGN-KLVTLPKI  399 (844)
T ss_dssp             TCCEEECCSCCC-CCCC-----------SSCSCSCCCCCEEEEETC-CSCCCSS----CCSCSEEEEESC-CCCCCCCC
T ss_pred             CCCEEECCCCCC-CccC-----------hhhhcCCCCCCEEECCCC-CCCcccC----CCCcchhccCCC-Cccccccc
Confidence            999999999753 3332           135778999999999985 4555443    689999999886 46677643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=2.5e-18  Score=168.28  Aligned_cols=275  Identities=23%  Similarity=0.232  Sum_probs=151.3

Q ss_pred             cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      +...+......+..+|..  +++++.|++++|.+..++...  ++|++|++++| .+..+|.  +..+++|++|++++| 
T Consensus        92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~N-  163 (454)
T 1jl5_A           92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNN-  163 (454)
T ss_dssp             TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSS-
T ss_pred             CCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCC--CCCCEEECcCC-CCCCCcc--cCCCCCCCEEECCCC-
Confidence            345566666566655532  356777777777666554332  56667777666 5555552  666666777777666 


Q ss_pred             ccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCC-------------------CCccccchhhhhC
Q 045968          100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWT-------------------GALIRIPRQLISK  160 (402)
Q Consensus       100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~-------------------~~~~~~~~~~l~~  160 (402)
                       .++.+|..+   . +|++|++++|.+..+| .+..+++|+.|++++|                   +.++.+|.  +..
T Consensus       164 -~l~~lp~~~---~-~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~--~~~  235 (454)
T 1jl5_A          164 -SLKKLPDLP---P-SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQN  235 (454)
T ss_dssp             -CCSCCCCCC---T-TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTT
T ss_pred             -cCcccCCCc---c-cccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc--cCC
Confidence             565554332   2 5666666666555555 3555555555555552                   23334442  445


Q ss_pred             CCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc---
Q 045968          161 FSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF---  237 (402)
Q Consensus       161 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---  237 (402)
                      +++|++|++.+|.+...                 ..  .+++|+.|+++.+....++.      ....|+.|++++|   
T Consensus       236 l~~L~~L~l~~N~l~~l-----------------~~--~~~~L~~L~l~~N~l~~l~~------~~~~L~~L~ls~N~l~  290 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKTL-----------------PD--LPPSLEALNVRDNYLTDLPE------LPQSLTFLDVSENIFS  290 (454)
T ss_dssp             CTTCCEEECCSSCCSSC-----------------CS--CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCcCCcc-----------------cc--cccccCEEECCCCcccccCc------ccCcCCEEECcCCccC
Confidence            55555555555544321                 11  23677888887655443322      2357777877776   


Q ss_pred             -------eeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCcc
Q 045968          238 -------ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPE  310 (402)
Q Consensus       238 -------~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  310 (402)
                             +|++|+++++.......   ..++|+.|+++++ .++.++..  +++|++|++++|.. +.++          
T Consensus       291 ~l~~~~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~l-~~lp----------  353 (454)
T 1jl5_A          291 GLSELPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNHL-AEVP----------  353 (454)
T ss_dssp             EESCCCTTCCEEECCSSCCSEECC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCC-SCCC----------
T ss_pred             cccCcCCcCCEEECcCCcCCcccC---CcCcCCEEECCCC-cccccccc--CCcCCEEECCCCcc-cccc----------
Confidence                   46667777665543221   2368999999988 67766543  68999999998743 3331          


Q ss_pred             ccCCCCCCCccceeecCcccccc--ccccCccCC-------------CCccEEEecCCCCCCC
Q 045968          311 MMGHISPFENLQRLNLEDLPNLE--SIYWKPLPF-------------TRLKEMAVLGCDQLEK  358 (402)
Q Consensus       311 ~~~~~~~l~~L~~L~l~~c~~l~--~i~~~~~~~-------------~~L~~L~i~~c~~L~~  358 (402)
                         .  .+++|+.|+++++.-..  .++.....+             ++|+.|++++++ ++.
T Consensus       354 ---~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~  410 (454)
T 1jl5_A          354 ---E--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE  410 (454)
T ss_dssp             ---C--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred             ---c--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCc
Confidence               1  46889999998864222  344333333             789999998764 553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=1.3e-17  Score=169.60  Aligned_cols=131  Identities=24%  Similarity=0.267  Sum_probs=112.3

Q ss_pred             ccCcEEEEeCCccccCC--CccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEE
Q 045968           19 EKRNFLVRAGAGLKEAP--DVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK   94 (402)
Q Consensus        19 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~   94 (402)
                      .....+..+...+..++  .+.++++|+.|++++|.++.+++.  ..+++|++|++++| .+..+++..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence            34567777888888875  488899999999999999998763  78999999999999 88999988899999999999


Q ss_pred             ccCCCccccccc-cccccccccccEEEecCCCCcc--ccHhhhcCCCCcEEEccCCCCccccc
Q 045968           95 MSNCGQGRLKLP-VGMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIRIP  154 (402)
Q Consensus        95 l~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~  154 (402)
                      +++|  .++.++ ..|+.+. +|++|++++|.+..  +|..+..+++|++|++++ +.++.++
T Consensus       131 Ls~N--~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~  189 (635)
T 4g8a_A          131 AVET--NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIY  189 (635)
T ss_dssp             CTTS--CCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEEC
T ss_pred             CCCC--cCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccc
Confidence            9999  899885 4588888 99999999998875  567789999999999998 4555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=1e-18  Score=163.09  Aligned_cols=267  Identities=13%  Similarity=0.066  Sum_probs=193.4

Q ss_pred             cceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEE
Q 045968           42 NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELL  119 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L  119 (402)
                      +++..++..+.+...+..  ..+++|++|++++| .+..+++..+..+++|++|++++|  .+...+. +..+. +|++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~-~~~l~-~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN--VLYETLD-LESLS-TLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS--CCEEEEE-ETTCT-TCCEE
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC--cCCcchh-hhhcC-CCCEE
Confidence            455566666666543322  56789999999998 888888777999999999999999  8887654 77788 99999


Q ss_pred             EecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          120 DISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       120 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      ++++|.+..++    ..++|++|++++ +.++.++..   .+++|++|++.+|.+..               .....+..
T Consensus        86 ~Ls~n~l~~l~----~~~~L~~L~l~~-n~l~~~~~~---~~~~L~~L~l~~N~l~~---------------~~~~~~~~  142 (317)
T 3o53_A           86 DLNNNYVQELL----VGPSIETLHAAN-NNISRVSCS---RGQGKKNIYLANNKITM---------------LRDLDEGC  142 (317)
T ss_dssp             ECCSSEEEEEE----ECTTCCEEECCS-SCCSEEEEC---CCSSCEEEECCSSCCCS---------------GGGBCTGG
T ss_pred             ECcCCcccccc----CCCCcCEEECCC-CccCCcCcc---ccCCCCEEECCCCCCCC---------------ccchhhhc
Confidence            99999988776    348999999999 577777653   47899999999998853               12234567


Q ss_pred             CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccC-cc
Q 045968          200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV-TF  278 (402)
Q Consensus       200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~  278 (402)
                      +++|+.|+++++....... .......+.|+.|++++|.++.+          .+.. .+++|+.|++++| .++.+ +.
T Consensus       143 l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~----------~~~~-~l~~L~~L~Ls~N-~l~~l~~~  209 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDV----------KGQV-VFAKLKTLDLSSN-KLAFMGPE  209 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEE----------ECCC-CCTTCCEEECCSS-CCCEECGG
T ss_pred             cCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCccc----------cccc-ccccCCEEECCCC-cCCcchhh
Confidence            8899999998765544321 11111234555555555554443          2233 5889999999998 77776 45


Q ss_pred             cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccc-cccccCccCCCCccEEEecCCCCCC
Q 045968          279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNL-ESIYWKPLPFTRLKEMAVLGCDQLE  357 (402)
Q Consensus       279 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~i~~c~~L~  357 (402)
                      +..+++|++|++++|.. +.++            ..+..+++|+.|++++++-. ..++.....+++|+.+++.++..++
T Consensus       210 ~~~l~~L~~L~L~~N~l-~~l~------------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          210 FQSAAGVTWISLRNNKL-VLIE------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             GGGGTTCSEEECTTSCC-CEEC------------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hcccCcccEEECcCCcc-cchh------------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            77889999999999754 3443            35677899999999987654 3444445667899999998777777


Q ss_pred             CCCCC
Q 045968          358 KLPVD  362 (402)
Q Consensus       358 ~lp~~  362 (402)
                      ..+..
T Consensus       277 ~~~~~  281 (317)
T 3o53_A          277 GQNEE  281 (317)
T ss_dssp             SSSSC
T ss_pred             CCchh
Confidence            65433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=2.1e-17  Score=167.13  Aligned_cols=250  Identities=20%  Similarity=0.175  Sum_probs=191.7

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI  121 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L  121 (402)
                      +++.|+++++.++.+|.... ++|++|++++| .+..+|.    .+++|++|++++|  .++.+|.   .+. +|++|++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N--~l~~lp~---~l~-~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN--QLTSLPV---LPP-GLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSC--CCSCCCC---CCT-TCCEEEE
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCC--cCCcCCC---CCC-CCCEEEC
Confidence            58999999999998887543 89999999999 7888776    5789999999999  8988876   455 9999999


Q ss_pred             cCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCC
Q 045968          122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK  201 (402)
Q Consensus       122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  201 (402)
                      ++|.+..+|.   .+++|+.|++++ +.++.+|..    +++|++|++.+|.+...                 .  ..++
T Consensus       109 s~N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~----l~~L~~L~Ls~N~l~~l-----------------~--~~~~  161 (622)
T 3g06_A          109 FSNPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLASL-----------------P--ALPS  161 (622)
T ss_dssp             CSCCCCCCCC---CCTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCSCC-----------------C--CCCT
T ss_pred             cCCcCCCCCC---CCCCcCEEECCC-CCCCcCCCC----CCCCCEEECcCCcCCCc-----------------C--CccC
Confidence            9999999887   678999999999 578888863    58999999999987531                 0  1346


Q ss_pred             CCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCccccc
Q 045968          202 YLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVF  281 (402)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~  281 (402)
                      +|+.|.+..+....++      ..++          +|+.|+++++.....+.   .+++|+.|++++| .++.++.  .
T Consensus       162 ~L~~L~L~~N~l~~l~------~~~~----------~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N-~l~~l~~--~  219 (622)
T 3g06_A          162 ELCKLWAYNNQLTSLP------MLPS----------GLQELSVSDNQLASLPT---LPSELYKLWAYNN-RLTSLPA--L  219 (622)
T ss_dssp             TCCEEECCSSCCSCCC------CCCT----------TCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSSCCC--C
T ss_pred             CCCEEECCCCCCCCCc------ccCC----------CCcEEECCCCCCCCCCC---ccchhhEEECcCC-cccccCC--C
Confidence            7888988876554433      2233          45555555554433222   4689999999998 7887764  3


Q ss_pred             CCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCC
Q 045968          282 APNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPV  361 (402)
Q Consensus       282 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~  361 (402)
                      +++|+.|++++|.. +.+               ...+++|+.|+++++ .+..++.   .+++|+.|++++| +++.+|.
T Consensus       220 ~~~L~~L~Ls~N~L-~~l---------------p~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~  278 (622)
T 3g06_A          220 PSGLKELIVSGNRL-TSL---------------PVLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE  278 (622)
T ss_dssp             CTTCCEEECCSSCC-SCC---------------CCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG
T ss_pred             CCCCCEEEccCCcc-CcC---------------CCCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH
Confidence            58999999999743 322               156789999999996 6777766   5699999999987 6888886


Q ss_pred             CCCCCCCCeeEEE
Q 045968          362 DSNSAKERKFVIR  374 (402)
Q Consensus       362 ~~~~~~~~~~~~~  374 (402)
                      ..... ++++.+.
T Consensus       279 ~l~~l-~~L~~L~  290 (622)
T 3g06_A          279 SLIHL-SSETTVN  290 (622)
T ss_dssp             GGGGS-CTTCEEE
T ss_pred             HHhhc-cccCEEE
Confidence            54443 5666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=1.7e-17  Score=152.24  Aligned_cols=215  Identities=22%  Similarity=0.244  Sum_probs=120.1

Q ss_pred             EEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcc
Q 045968           24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG  101 (402)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  101 (402)
                      +...+.++..+|. ...++++.|+++++.+..++.  ...+++|++|++++| .+..+++..+..+++|++|++++|  .
T Consensus        16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~   91 (285)
T 1ozn_A           16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN--A   91 (285)
T ss_dssp             EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC--T
T ss_pred             EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC--C
Confidence            3344445555543 123466666666666666543  255666666666665 555554444666666666666666  4


Q ss_pred             -cccc-ccccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccc
Q 045968          102 -RLKL-PVGMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFH  178 (402)
Q Consensus       102 -i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  178 (402)
                       +..+ +..+..+. +|++|++++|.+..++ ..+..+++|++|++++ +.++.++...+.++++|++|++.+|.+... 
T Consensus        92 ~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-  168 (285)
T 1ozn_A           92 QLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSV-  168 (285)
T ss_dssp             TCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred             CccccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCccccc-
Confidence             5555 44555555 6666666666665553 3355666666666666 355555544456666666666666554321 


Q ss_pred             cCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccc
Q 045968          179 EAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFV  258 (402)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~  258 (402)
                                    ....+..+++|+.|.++++                          .+..+...        ... .
T Consensus       169 --------------~~~~~~~l~~L~~L~l~~n--------------------------~l~~~~~~--------~~~-~  199 (285)
T 1ozn_A          169 --------------PERAFRGLHSLDRLLLHQN--------------------------RVAHVHPH--------AFR-D  199 (285)
T ss_dssp             --------------CTTTTTTCTTCCEEECCSS--------------------------CCCEECTT--------TTT-T
T ss_pred             --------------CHHHhcCccccCEEECCCC--------------------------cccccCHh--------Hcc-C
Confidence                          1112333444444444322                          22222110        011 5


Q ss_pred             cccccEEecccccCcccCc--ccccCCCCCEEeecCCcc
Q 045968          259 FRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDA  295 (402)
Q Consensus       259 ~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~  295 (402)
                      +++|+.|+++++ .++.++  .+..+++|++|++++|+.
T Consensus       200 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          200 LGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence            778888888887 666664  366788888888888654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=7.2e-18  Score=156.68  Aligned_cols=192  Identities=21%  Similarity=0.248  Sum_probs=120.7

Q ss_pred             ccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccc
Q 045968           37 VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSL  116 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L  116 (402)
                      ...+++++.|++.++.+..++....+++|++|++++| .+..++.  +..+++|++|++++|  .++.++ .+..+. +|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n--~l~~~~-~~~~l~-~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGN--PLKNVS-AIAGLQ-SI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSC--CCSCCG-GGTTCT-TC
T ss_pred             HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCC--cCCCch-hhcCCC-CC
Confidence            3445677777777777776666666777777777766 6666655  677777777777777  666654 455566 77


Q ss_pred             cEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHh
Q 045968          117 ELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQE  196 (402)
Q Consensus       117 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (402)
                      ++|++++|.+..++. +..+++|++|++++ +.++.++.  +..+++|++|++.+|.+..                 +..
T Consensus       110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~  168 (308)
T 1h6u_A          110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD-----------------LTP  168 (308)
T ss_dssp             CEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGG
T ss_pred             CEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC-----------------Chh
Confidence            777777777766653 66677777777777 45666654  6667777777777665532                 111


Q ss_pred             hhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccC
Q 045968          197 LLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV  276 (402)
Q Consensus       197 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l  276 (402)
                      +..+++|+.|+++.+...                                    ...+.. .+++|+.|++++| .++.+
T Consensus       169 l~~l~~L~~L~l~~n~l~------------------------------------~~~~l~-~l~~L~~L~L~~N-~l~~~  210 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKIS------------------------------------DISPLA-SLPNLIEVHLKNN-QISDV  210 (308)
T ss_dssp             GTTCTTCCEEECCSSCCC------------------------------------CCGGGG-GCTTCCEEECTTS-CCCBC
T ss_pred             hcCCCCCCEEECCCCccC------------------------------------cChhhc-CCCCCCEEEccCC-ccCcc
Confidence            445555555555433211                                    111112 5667777777776 56666


Q ss_pred             cccccCCCCCEEeecCCc
Q 045968          277 TFLVFAPNLKSLDLDGCD  294 (402)
Q Consensus       277 ~~~~~l~~L~~L~l~~c~  294 (402)
                      +.+..+++|+.|++++|+
T Consensus       211 ~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          211 SPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             GGGTTCTTCCEEEEEEEE
T ss_pred             ccccCCCCCCEEEccCCe
Confidence            666667777777777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=1.6e-18  Score=161.51  Aligned_cols=228  Identities=14%  Similarity=0.137  Sum_probs=174.6

Q ss_pred             CccCCccceEEEccC-Cccc-ccCC-CCCCCccceEecccccccc-ccchHHhccCCCCCEEEccCCCcccc-ccccccc
Q 045968           36 DVKGWENVRRLSLMQ-NQIE-TVSE-VPTCPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMS  110 (402)
Q Consensus        36 ~~~~~~~l~~L~l~~-~~~~-~~~~-~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~  110 (402)
                      .+..+++|+.|++++ |.+. .+|. ...+++|++|++++| .+. .+|.. +..+++|++|++++|  .+. .+|..+.
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N--~l~~~~p~~~~  146 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYN--ALSGTLPPSIS  146 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSS--EEESCCCGGGG
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCC--ccCCcCChHHh
Confidence            577889999999995 7776 3554 478999999999999 665 56655 899999999999999  888 5688899


Q ss_pred             cccccccEEEecCCCCc-cccHhhhcCC-CCcEEEccCCCCcc-ccchhhhhCCCCCcEEEeeeecccccccCCCccccc
Q 045968          111 VLGSSLELLDISCTGIT-ELPEELKKLV-NLKCLNLRWTGALI-RIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLF  187 (402)
Q Consensus       111 ~l~~~L~~L~L~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  187 (402)
                      .+. +|++|++++|.+. .+|..+..++ +|+.|++++| .++ .+|.. +..++ |++|++.+|.+..           
T Consensus       147 ~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~-~~~l~-L~~L~Ls~N~l~~-----------  211 (313)
T 1ogq_A          147 SLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPT-FANLN-LAFVDLSRNMLEG-----------  211 (313)
T ss_dssp             GCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGG-GGGCC-CSEEECCSSEEEE-----------
T ss_pred             cCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChH-HhCCc-ccEEECcCCcccC-----------
Confidence            998 9999999999998 8899999998 9999999995 555 56654 88887 9999999988742           


Q ss_pred             CCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEec
Q 045968          188 GGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTM  267 (402)
Q Consensus       188 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l  267 (402)
                          .....+..+++|+.|+++.+.                          +.          ..++....+++|+.|++
T Consensus       212 ----~~~~~~~~l~~L~~L~L~~N~--------------------------l~----------~~~~~~~~l~~L~~L~L  251 (313)
T 1ogq_A          212 ----DASVLFGSDKNTQKIHLAKNS--------------------------LA----------FDLGKVGLSKNLNGLDL  251 (313)
T ss_dssp             ----CCGGGCCTTSCCSEEECCSSE--------------------------EC----------CBGGGCCCCTTCCEEEC
T ss_pred             ----cCCHHHhcCCCCCEEECCCCc--------------------------ee----------eecCcccccCCCCEEEC
Confidence                233445667777777776432                          21          11111115788999999


Q ss_pred             ccccCcc-cCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccc
Q 045968          268 VLCHKLK-DVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIY  336 (402)
Q Consensus       268 ~~~~~l~-~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~  336 (402)
                      ++| .++ .++ .+..+++|++|++++|.....++             ....+++|+.|++.+++.+...+
T Consensus       252 s~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-------------~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          252 RNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-------------QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECC-------------CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             cCC-cccCcCChHHhcCcCCCEEECcCCcccccCC-------------CCccccccChHHhcCCCCccCCC
Confidence            888 565 444 67788999999999986544443             23778999999999988776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=1.5e-17  Score=152.70  Aligned_cols=218  Identities=19%  Similarity=0.192  Sum_probs=156.9

Q ss_pred             eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEec
Q 045968           44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDIS  122 (402)
Q Consensus        44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~  122 (402)
                      +.++..++.++.+|.. ..++|++|++++| .+..++...|..+++|++|++++|  .+..+ +..+..+. +|++|+++
T Consensus        14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~-~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLA-LLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCT-TCCEEECC
T ss_pred             eEEEcCcCCcccCCcC-CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC--ccceeCHhhcCCcc-CCCEEeCC
Confidence            5678888888877753 3578999999988 778887766889999999999999  78877 66788888 99999999


Q ss_pred             CCC-Cccc-cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968          123 CTG-ITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL  200 (402)
Q Consensus       123 ~~~-l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  200 (402)
                      +|. +..+ |..+..+++|++|++++ +.++.++...+.++++|++|++.+|.+...               ....+..+
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l  152 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQAL---------------PDDTFRDL  152 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTC
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCC-CcCCEECHhHhhCCcCCCEEECCCCccccc---------------CHhHhccC
Confidence            986 7777 55688889999999998 567777555588899999999988877431               11234555


Q ss_pred             CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccC--cc
Q 045968          201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV--TF  278 (402)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~  278 (402)
                      ++|+.|+++++                          .++.+.-.        ... .+++|+.|+++++ .++.+  ..
T Consensus       153 ~~L~~L~l~~n--------------------------~l~~~~~~--------~~~-~l~~L~~L~l~~n-~l~~~~~~~  196 (285)
T 1ozn_A          153 GNLTHLFLHGN--------------------------RISSVPER--------AFR-GLHSLDRLLLHQN-RVAHVHPHA  196 (285)
T ss_dssp             TTCCEEECCSS--------------------------CCCEECTT--------TTT-TCTTCCEEECCSS-CCCEECTTT
T ss_pred             CCccEEECCCC--------------------------cccccCHH--------Hhc-CccccCEEECCCC-cccccCHhH
Confidence            66666665533                          22222110        012 5788899999888 56664  35


Q ss_pred             cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       279 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                      +..+++|++|++++|.. +.++.           ..+..+++|+.|++++++
T Consensus       197 ~~~l~~L~~L~l~~n~l-~~~~~-----------~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          197 FRDLGRLMTLYLFANNL-SALPT-----------EALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTTCTTCCEEECCSSCC-SCCCH-----------HHHTTCTTCCEEECCSSC
T ss_pred             ccCcccccEeeCCCCcC-CcCCH-----------HHcccCcccCEEeccCCC
Confidence            67788999999988744 22221           245678888888888865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=1.5e-18  Score=171.51  Aligned_cols=215  Identities=22%  Similarity=0.179  Sum_probs=139.3

Q ss_pred             CCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccc
Q 045968           39 GWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSL  116 (402)
Q Consensus        39 ~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L  116 (402)
                      .+++|+.|++++|.+..++.  +..+++|++|++++| .+...++  +..+++|++|++++|  .++.++..    . +|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N--~l~~l~~~----~-~L  101 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN--YVQELLVG----P-SI  101 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSS--EEEEEEEC----T-TC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCC--cCCCCCCC----C-Cc
Confidence            34578888888888887653  377888888888887 6665554  788888888888888  77766532    4 88


Q ss_pred             cEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHh
Q 045968          117 ELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQE  196 (402)
Q Consensus       117 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (402)
                      ++|++++|.+..++..  .+++|+.|++++ +.++.++...+..+++|++|++++|.+..               .....
T Consensus       102 ~~L~L~~N~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~  163 (487)
T 3oja_A          102 ETLHAANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDT---------------VNFAE  163 (487)
T ss_dssp             CEEECCSSCCCCEEEC--CCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCE---------------EEGGG
T ss_pred             CEEECcCCcCCCCCcc--ccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCC---------------cChHH
Confidence            8888888888776543  467888888888 46666544347788888888888887742               12233


Q ss_pred             hh-cCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCccc
Q 045968          197 LL-GLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKD  275 (402)
Q Consensus       197 l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  275 (402)
                      +. .+++|+.|+++++....+....    ..++|+.|++++|.+.          ..++....+++|+.|++++| .++.
T Consensus       164 l~~~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~----------~~~~~~~~l~~L~~L~Ls~N-~l~~  228 (487)
T 3oja_A          164 LAASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLA----------FMGPEFQSAAGVTWISLRNN-KLVL  228 (487)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCC----------EECGGGGGGTTCSEEECTTS-CCCE
T ss_pred             HhhhCCcccEEecCCCccccccccc----cCCCCCEEECCCCCCC----------CCCHhHcCCCCccEEEecCC-cCcc
Confidence            33 5777888887765543331111    1333444433333332          22222115667777777776 5555


Q ss_pred             Cc-ccccCCCCCEEeecCCcch
Q 045968          276 VT-FLVFAPNLKSLDLDGCDAM  296 (402)
Q Consensus       276 l~-~~~~l~~L~~L~l~~c~~l  296 (402)
                      ++ .+..+++|+.|++++|+..
T Consensus       229 lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          229 IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cchhhccCCCCCEEEcCCCCCc
Confidence            54 4555677777777776554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=9.5e-17  Score=146.58  Aligned_cols=216  Identities=21%  Similarity=0.218  Sum_probs=147.9

Q ss_pred             EEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      .+...+..+..+|..- .++++.|++++|.+..++.  ...+++|++|++++| .+..++...|..+++|++|++++|  
T Consensus        11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n--   86 (276)
T 2z62_A           11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN--   86 (276)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC--
T ss_pred             eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC--
Confidence            3445555666676522 2578999999998888764  477889999999988 777777766888999999999998  


Q ss_pred             cccccc-cccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeeecccc
Q 045968          101 GRLKLP-VGMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       101 ~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                      .+..++ ..+..+. +|++|++++|.+..++. .+..+++|++|++++ +.++.  +|.. +.++++|++|++.+|.+..
T Consensus        87 ~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           87 PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             CCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred             ccCccChhhhcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchh-hccCCCCCEEECCCCCCCc
Confidence            787764 5677787 99999999988887765 478888999999988 46665  4554 8888999999998887753


Q ss_pred             cccCCCcccccCCcchhhHhhhcCCCCc-eEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC
Q 045968          177 FHEAPEDSVLFGGGEVLIQELLGLKYLE-VLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE  255 (402)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~  255 (402)
                      .            ....+..+..++.+. .|+++.+                          .+..+          .+.
T Consensus       164 ~------------~~~~~~~l~~L~~l~l~L~ls~n--------------------------~l~~~----------~~~  195 (276)
T 2z62_A          164 I------------YCTDLRVLHQMPLLNLSLDLSLN--------------------------PMNFI----------QPG  195 (276)
T ss_dssp             E------------CGGGGHHHHTCTTCCEEEECCSS--------------------------CCCEE----------CTT
T ss_pred             C------------CHHHhhhhhhccccceeeecCCC--------------------------ccccc----------Ccc
Confidence            2            112333344444333 3333322                          22222          111


Q ss_pred             ccccccccEEecccccCcccCc--ccccCCCCCEEeecCCc
Q 045968          256 PFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCD  294 (402)
Q Consensus       256 ~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~  294 (402)
                      .....+|+.|+++++ .++.++  .+..+++|++|++++|+
T Consensus       196 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          196 AFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             SSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             ccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence            113447888888877 566664  34667788888887653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=1.5e-18  Score=161.65  Aligned_cols=244  Identities=17%  Similarity=0.129  Sum_probs=173.3

Q ss_pred             CccceEEEccCCcccccCCCCCCCccceEeccccccccc--cchHHhc-------cCCCCCEEEccCCCcccc-cccccc
Q 045968           40 WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEM--IADGFFQ-------LMPSLKVLKMSNCGQGRL-KLPVGM  109 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~-------~l~~L~~L~l~~~~~~i~-~l~~~~  109 (402)
                      .++++.+++.+|.+ .+|.. -...|+.|++++| .+..  ++.. +.       .+++|++|++++|  .++ .+|..+
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~-~~~~L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~  115 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQ-FTDIIKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENL--EVTGTAPPPL  115 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHH-HHHHHHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE--BCBSCCCCCS
T ss_pred             CCCceeEeeccccc-ccHHH-HHHHHhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCC--cccchhHHHH
Confidence            35677777888877 55542 1122888899987 5533  4443 33       6899999999999  887 457765


Q ss_pred             --ccccccccEEEecCCCCccccHhhhcC-----CCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCC
Q 045968          110 --SVLGSSLELLDISCTGITELPEELKKL-----VNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPE  182 (402)
Q Consensus       110 --~~l~~~L~~L~L~~~~l~~lp~~i~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  182 (402)
                        ..+. +|++|++++|.+...|..+..+     ++|++|++++ +.++.++...+.++++|++|++.+|.+..      
T Consensus       116 ~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------  187 (312)
T 1wwl_A          116 LEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELG------  187 (312)
T ss_dssp             SSCCSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCH------
T ss_pred             HHhcCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCc------
Confidence              7777 9999999999998888777766     8999999999 57788876569999999999999998642      


Q ss_pred             cccccCCcchhhHhh--hcCCCCceEEEEecCchhhHhhhhh-hhhcccceeeEeccceeeeEeccccccccCCCCc--c
Q 045968          183 DSVLFGGGEVLIQEL--LGLKYLEVLELSLGSYHALQILLSS-NKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP--F  257 (402)
Q Consensus       183 ~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~--~  257 (402)
                             .......+  ..+++|+.|+++.+....+..++.. ....+          +|++|+++++......+..  .
T Consensus       188 -------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~----------~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          188 -------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV----------QLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             -------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC----------CCSEEECTTSCCCSSCCCSCCC
T ss_pred             -------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC----------CCCEEECCCCcCCcccchhhhh
Confidence                   11223344  7889999999998776654443322 12233          4455555555544433221  1


Q ss_pred             ccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          258 VFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                      .+++|+.|++++| .++.++.... ++|++|++++|.. +.+             ..+..+++|+.|++++++
T Consensus       251 ~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~l-~~~-------------p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          251 WPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSYNRL-DRN-------------PSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCSSCC-CSC-------------CCTTTSCEEEEEECTTCT
T ss_pred             hcCCCCEEECCCC-ccChhhhhcc-CCceEEECCCCCC-CCC-------------hhHhhCCCCCEEeccCCC
Confidence            4689999999998 7887764322 8999999999754 332             136789999999999853

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=2.8e-17  Score=152.67  Aligned_cols=205  Identities=17%  Similarity=0.198  Sum_probs=145.1

Q ss_pred             EEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCC
Q 045968           46 LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTG  125 (402)
Q Consensus        46 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~  125 (402)
                      +.+..+.+.++.....+++|++|.+.+| .+..++.  +..+++|++|++++|  .+..++. +..+. +|++|++++|.
T Consensus        24 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n--~i~~~~~-~~~l~-~L~~L~L~~n~   96 (308)
T 1h6u_A           24 IAAGKSNVTDTVTQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN--QITDLAP-LKNLT-KITELELSGNP   96 (308)
T ss_dssp             HHTTCSSTTSEECHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS--CCCCCGG-GTTCC-SCCEEECCSCC
T ss_pred             HHhCCCCcCceecHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCC--cCCCChh-HccCC-CCCEEEccCCc
Confidence            3344444444444456778888888877 6666653  777888888888888  7777765 67777 88888888888


Q ss_pred             CccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCce
Q 045968          126 ITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEV  205 (402)
Q Consensus       126 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  205 (402)
                      +..++ .+..+++|++|++++ +.++.++.  +..+++|++|++.+|.+...                 ..+..+++|+.
T Consensus        97 l~~~~-~~~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-----------------~~l~~l~~L~~  155 (308)
T 1h6u_A           97 LKNVS-AIAGLQSIKTLDLTS-TQITDVTP--LAGLSNLQVLYLDLNQITNI-----------------SPLAGLTNLQY  155 (308)
T ss_dssp             CSCCG-GGTTCTTCCEEECTT-SCCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GGGGGCTTCCE
T ss_pred             CCCch-hhcCCCCCCEEECCC-CCCCCchh--hcCCCCCCEEECCCCccCcC-----------------ccccCCCCccE
Confidence            77775 577788888888888 46676664  77888888888887776421                 11555566666


Q ss_pred             EEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCC
Q 045968          206 LELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNL  285 (402)
Q Consensus       206 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L  285 (402)
                      |+++.+.                          ++          ...+.. .+++|+.|++++| .++.++.+..+++|
T Consensus       156 L~l~~n~--------------------------l~----------~~~~l~-~l~~L~~L~l~~n-~l~~~~~l~~l~~L  197 (308)
T 1h6u_A          156 LSIGNAQ--------------------------VS----------DLTPLA-NLSKLTTLKADDN-KISDISPLASLPNL  197 (308)
T ss_dssp             EECCSSC--------------------------CC----------CCGGGT-TCTTCCEEECCSS-CCCCCGGGGGCTTC
T ss_pred             EEccCCc--------------------------CC----------CChhhc-CCCCCCEEECCCC-ccCcChhhcCCCCC
Confidence            6555332                          21          111122 6899999999998 78888888899999


Q ss_pred             CEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          286 KSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       286 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                      ++|++++|.. ..+             ..+..+++|+.|++++++
T Consensus       198 ~~L~L~~N~l-~~~-------------~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          198 IEVHLKNNQI-SDV-------------SPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CEEECTTSCC-CBC-------------GGGTTCTTCCEEEEEEEE
T ss_pred             CEEEccCCcc-Ccc-------------ccccCCCCCCEEEccCCe
Confidence            9999999754 222             246788999999999864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=3.9e-17  Score=145.94  Aligned_cols=140  Identities=16%  Similarity=0.321  Sum_probs=105.2

Q ss_pred             ccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccC-CCccccccc
Q 045968           30 GLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN-CGQGRLKLP  106 (402)
Q Consensus        30 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~i~~l~  106 (402)
                      ++..+|.  -..+++.|++++|.++.++.  ...+++|++|++++|..+..+++..|.++++|++|++++ |  .++.++
T Consensus        22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n--~l~~i~   97 (239)
T 2xwt_C           22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR--NLTYID   97 (239)
T ss_dssp             SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET--TCCEEC
T ss_pred             CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC--CeeEcC
Confidence            3667776  33578888888888887765  367888888888887437777776688888888888887 6  777774


Q ss_pred             -cccccccccccEEEecCCCCccccHhhhcCCCCc---EEEccCCCCccccchhhhhCCCCCc-EEEeeeeccc
Q 045968          107 -VGMSVLGSSLELLDISCTGITELPEELKKLVNLK---CLNLRWTGALIRIPRQLISKFSRLR-VLRMFAIGYD  175 (402)
Q Consensus       107 -~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~  175 (402)
                       ..|..+. +|++|++++|.+..+|. +..+++|+   .|++++|..++.++...+.++++|+ +|++.++.+.
T Consensus        98 ~~~f~~l~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C           98 PDALKELP-LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             TTSEECCT-TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             HHHhCCCC-CCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence             4566777 88888888888887776 67777777   8888884377777766577788888 8887776653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=2.3e-17  Score=162.98  Aligned_cols=238  Identities=14%  Similarity=0.074  Sum_probs=173.3

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL  139 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L  139 (402)
                      ..+++|++|++++| .+..+++..|..+++|++|++++|  .+...+. ++.+. +|++|++++|.+..+|..    ++|
T Consensus        31 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~-l~~l~-~L~~L~Ls~N~l~~l~~~----~~L  101 (487)
T 3oja_A           31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN--VLYETLD-LESLS-TLRTLDLNNNYVQELLVG----PSI  101 (487)
T ss_dssp             TTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS--CCEEEEE-CTTCT-TCCEEECCSSEEEEEEEC----TTC
T ss_pred             ccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC--CCCCCcc-cccCC-CCCEEEecCCcCCCCCCC----CCc
Confidence            45679999999998 888887666999999999999999  8886654 77888 999999999998877643    899


Q ss_pred             cEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhh
Q 045968          140 KCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQIL  219 (402)
Q Consensus       140 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  219 (402)
                      +.|++++ +.++.++..   .+++|++|++.+|.+..               .....+..+++|+.|+++++....... 
T Consensus       102 ~~L~L~~-N~l~~~~~~---~l~~L~~L~L~~N~l~~---------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~-  161 (487)
T 3oja_A          102 ETLHAAN-NNISRVSCS---RGQGKKNIYLANNKITM---------------LRDLDEGCRSRVQYLDLKLNEIDTVNF-  161 (487)
T ss_dssp             CEEECCS-SCCCCEEEC---CCSSCEEEECCSSCCCS---------------GGGBCGGGGSSEEEEECTTSCCCEEEG-
T ss_pred             CEEECcC-CcCCCCCcc---ccCCCCEEECCCCCCCC---------------CCchhhcCCCCCCEEECCCCCCCCcCh-
Confidence            9999999 577777653   47899999999998853               222346678899999998765543211 


Q ss_pred             hhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccC-cccccCCCCCEEeecCCcchHH
Q 045968          220 LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDV-TFLVFAPNLKSLDLDGCDAMEE  298 (402)
Q Consensus       220 ~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~l~~L~~L~l~~c~~l~~  298 (402)
                      ......++.|+.|++++|.+..+          ++.. .+++|+.|++++| .++.+ +.+..+++|+.|++++|.. ..
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~----------~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l-~~  228 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDV----------KGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKL-VL  228 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE----------ECCC-CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCC-CE
T ss_pred             HHHhhhCCcccEEecCCCccccc----------cccc-cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcC-cc
Confidence            11111234555555555544433          3333 6889999999998 67776 4677889999999999754 33


Q ss_pred             HhhcCCCCCCccccCCCCCCCccceeecCccccc-cccccCccCCCCccEEEec
Q 045968          299 IISVGKFAETPEMMGHISPFENLQRLNLEDLPNL-ESIYWKPLPFTRLKEMAVL  351 (402)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~i~  351 (402)
                      ++            ..+..+++|+.|++++++-. ..++.....++.|+.+++.
T Consensus       229 lp------------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          229 IE------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EC------------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cc------------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            32            35677889999999987644 2444444556788877775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=7.2e-17  Score=148.58  Aligned_cols=199  Identities=18%  Similarity=0.110  Sum_probs=150.6

Q ss_pred             ccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccc
Q 045968           37 VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSL  116 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L  116 (402)
                      +..+.+++.+++.++.++.+|... .++++.|++++| .+..+++..|..+++|++|++++|  .++.++.. +.+. +|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~-~~l~-~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVD-GTLP-VL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS--CCCEEECC-SCCT-TC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC--ccCcccCC-CCCC-cC
Confidence            455678999999999999887653 378999999998 777877766999999999999999  88888654 5677 99


Q ss_pred             cEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHh
Q 045968          117 ELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQE  196 (402)
Q Consensus       117 ~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (402)
                      ++|++++|.+..+|..+..+++|++|++++ +.++.++...+.++++|++|++.+|.+...               ....
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~  143 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL---------------PPGL  143 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC---------------CTTT
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCcc---------------Chhh
Confidence            999999999999998889999999999999 688888876689999999999999887532               1223


Q ss_pred             hhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCccc
Q 045968          197 LLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKD  275 (402)
Q Consensus       197 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~  275 (402)
                      +..+++|+.|.++.+.                          ++          ..++.. ..+++|+.|+++++ .++.
T Consensus       144 ~~~l~~L~~L~L~~N~--------------------------l~----------~l~~~~~~~l~~L~~L~L~~N-~l~~  186 (290)
T 1p9a_G          144 LTPTPKLEKLSLANNN--------------------------LT----------ELPAGLLNGLENLDTLLLQEN-SLYT  186 (290)
T ss_dssp             TTTCTTCCEEECTTSC--------------------------CS----------CCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred             cccccCCCEEECCCCc--------------------------CC----------ccCHHHhcCcCCCCEEECCCC-cCCc
Confidence            4456666666665332                          21          111110 04677777777777 5666


Q ss_pred             Cc-ccccCCCCCEEeecCCc
Q 045968          276 VT-FLVFAPNLKSLDLDGCD  294 (402)
Q Consensus       276 l~-~~~~l~~L~~L~l~~c~  294 (402)
                      ++ .+...++|+.|++.+|+
T Consensus       187 ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCC
T ss_pred             cChhhcccccCCeEEeCCCC
Confidence            64 45556777888777654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.72  E-value=3.3e-17  Score=165.71  Aligned_cols=88  Identities=19%  Similarity=0.262  Sum_probs=54.7

Q ss_pred             ccccccEEecccccC-ccc--Cccc-ccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc
Q 045968          258 VFRNLHRVTMVLCHK-LKD--VTFL-VFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE  333 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~-l~~--l~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  333 (402)
                      .+++|++|+++.|.+ +++  +..+ ..+++|++|++++|.. ++..          ....+..+++|+.|++++|+ +.
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~----------~~~~~~~~~~L~~L~l~~n~-l~  501 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEG----------LMEFSRGCPNLQKLEMRGCC-FS  501 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS-SHHH----------HHHHHTCCTTCCEEEEESCC-CB
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC-CHHH----------HHHHHhcCcccCeeeccCCC-Cc
Confidence            466777777765532 332  1222 2367788888877653 2211          11234677899999999987 43


Q ss_pred             c--cccCccCCCCccEEEecCCCCCCC
Q 045968          334 S--IYWKPLPFTRLKEMAVLGCDQLEK  358 (402)
Q Consensus       334 ~--i~~~~~~~~~L~~L~i~~c~~L~~  358 (402)
                      .  +......+++|++|++++|. ++.
T Consensus       502 ~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          502 ERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             HHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             HHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            2  33334457999999999997 654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=1.4e-17  Score=163.22  Aligned_cols=309  Identities=17%  Similarity=0.130  Sum_probs=186.3

Q ss_pred             CcEEEEeCCcccc-----C-CCccCCccceEEEccCCcccccC--CC-CCCC----ccceEeccccccccccc----hHH
Q 045968           21 RNFLVRAGAGLKE-----A-PDVKGWENVRRLSLMQNQIETVS--EV-PTCP----HLLTLFLDFNQELEMIA----DGF   83 (402)
Q Consensus        21 ~~~~~~~~~~~~~-----~-~~~~~~~~l~~L~l~~~~~~~~~--~~-~~~~----~L~~L~l~~~~~l~~~~----~~~   83 (402)
                      -..+...+..+..     + ..+..+++|+.|++++|.+.+..  .. ..++    +|++|++++| .+.+..    ...
T Consensus        30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~  108 (461)
T 1z7x_W           30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSST  108 (461)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHH
T ss_pred             ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHH
Confidence            4555555545442     1 22455577888888888765421  11 2233    6888888877 555321    334


Q ss_pred             hccCCCCCEEEccCCCcccccc-cccccc-----ccccccEEEecCCCCcc-----ccHhhhcCCCCcEEEccCCCCccc
Q 045968           84 FQLMPSLKVLKMSNCGQGRLKL-PVGMSV-----LGSSLELLDISCTGITE-----LPEELKKLVNLKCLNLRWTGALIR  152 (402)
Q Consensus        84 ~~~l~~L~~L~l~~~~~~i~~l-~~~~~~-----l~~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~  152 (402)
                      +..+++|++|++++|  .+... +..+..     .. +|++|++++|.+..     ++..+..+++|++|++++| .++.
T Consensus       109 l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~  184 (461)
T 1z7x_W          109 LRTLPTLQELHLSDN--LLGDAGLQLLCEGLLDPQC-RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINE  184 (461)
T ss_dssp             TTSCTTCCEEECCSS--BCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHH
T ss_pred             HccCCceeEEECCCC--cCchHHHHHHHHHHhcCCC-cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-Ccch
Confidence            778888888888888  66532 222221     23 68888888887764     3445667788888888884 4554


Q ss_pred             cchhhhh-----CCCCCcEEEeeeecccccccCCCcccccCCcc-hhhHhhhcCCCCceEEEEecCchhhH--hhhh-hh
Q 045968          153 IPRQLIS-----KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGE-VLIQELLGLKYLEVLELSLGSYHALQ--ILLS-SN  223 (402)
Q Consensus       153 ~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~-~~  223 (402)
                      .+...+.     ..++|++|++.+|.+...            .. .....+..+++|+.|+++++......  .+.. ..
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~  252 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCGVTSD------------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL  252 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTT------------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCCCcHH------------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence            3222232     356888888888876421            10 12345667888888888866543321  1211 11


Q ss_pred             hhcccceeeEeccc------------------eeeeEeccccccccCCCC------ccccccccEEecccccCcccC---
Q 045968          224 KLKSCIRSLCLDGF------------------ELEELKIDYTEIVRKRRE------PFVFRNLHRVTMVLCHKLKDV---  276 (402)
Q Consensus       224 ~~~~~L~~L~l~~~------------------~L~~L~i~~~~~~~~~~~------~~~~~~L~~L~l~~~~~l~~l---  276 (402)
                      ...+.|+.|++++|                  +|++|+++++......+.      ....++|+.|++++| .++..   
T Consensus       253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~  331 (461)
T 1z7x_W          253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCS  331 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred             cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHH
Confidence            23567888888877                  678888877755221110      002368999999988 56553   


Q ss_pred             ---cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCC-CCCCccceeecCcccccc-----ccccCccCCCCccE
Q 045968          277 ---TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI-SPFENLQRLNLEDLPNLE-----SIYWKPLPFTRLKE  347 (402)
Q Consensus       277 ---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~-----~i~~~~~~~~~L~~  347 (402)
                         ..+..+++|++|++++|. +.+....       .....+ ...++|+.|++++|. +.     .++.....+++|++
T Consensus       332 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~-------~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          332 HFSSVLAQNRFLLELQISNNR-LEDAGVR-------ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             HHHHHHHHCSSCCEEECCSSB-CHHHHHH-------HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHHHhhCCCccEEEccCCc-cccccHH-------HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccE
Confidence               245567999999999974 4443210       000111 226799999999874 43     44444445799999


Q ss_pred             EEecCCCCCC
Q 045968          348 MAVLGCDQLE  357 (402)
Q Consensus       348 L~i~~c~~L~  357 (402)
                      |++++++ +.
T Consensus       403 L~l~~N~-i~  411 (461)
T 1z7x_W          403 LDLSNNC-LG  411 (461)
T ss_dssp             EECCSSS-CC
T ss_pred             EECCCCC-CC
Confidence            9998874 44

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=2.1e-16  Score=143.89  Aligned_cols=128  Identities=21%  Similarity=0.300  Sum_probs=92.7

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccc-cccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVG-MSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~~L~~L~  120 (402)
                      ..+.++++++.++.+|.... +++++|++++| .+..++...|..+++|++|++++|  .++.++.. |..+. +|++|+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~~~~~~~l~-~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN--KLQTLPAGIFKELK-NLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC-TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS--CCSCCCTTTTSSCT-TCCEEE
T ss_pred             CCCEEEccCCCCCccCCCCC-CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC--ccCeeChhhhcCCC-CCCEEE
Confidence            45677888777777765322 57788888877 677777655778888888888888  77777544 45566 888888


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      +++|.+..+|.. +..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            888877777654 56778888888887 5667766655777888888888777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.70  E-value=5.3e-18  Score=166.26  Aligned_cols=290  Identities=19%  Similarity=0.179  Sum_probs=151.1

Q ss_pred             ccCCccceEEEccCCcccc-----cCC-CCCCCccceEecccccccccc-chHHhccCC----CCCEEEccCCCcccc--
Q 045968           37 VKGWENVRRLSLMQNQIET-----VSE-VPTCPHLLTLFLDFNQELEMI-ADGFFQLMP----SLKVLKMSNCGQGRL--  103 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~~-----~~~-~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~----~L~~L~l~~~~~~i~--  103 (402)
                      +..+++++.|++++|.+..     ++. ...+++|++|++++| .+.+. +..++..++    +|++|++++|  .+.  
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n--~i~~~  100 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC--CLTGA  100 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS--CCBGG
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC--CCCHH
Confidence            3455677777777776653     222 255677777777776 45442 223334455    5777777777  555  


Q ss_pred             ---ccccccccccccccEEEecCCCCccc-cHhh-----hcCCCCcEEEccCCCCccccc----hhhhhCCCCCcEEEee
Q 045968          104 ---KLPVGMSVLGSSLELLDISCTGITEL-PEEL-----KKLVNLKCLNLRWTGALIRIP----RQLISKFSRLRVLRMF  170 (402)
Q Consensus       104 ---~l~~~~~~l~~~L~~L~L~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~  170 (402)
                         .++..+..+. +|++|++++|.+... +..+     ...++|++|++++| .++...    ...+..+++|++|++.
T Consensus       101 ~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~  178 (461)
T 1z7x_W          101 GCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVS  178 (461)
T ss_dssp             GHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECc
Confidence               2355566666 777777777766532 1111     12456777777774 444321    1225567777777777


Q ss_pred             eecccccccCCCcccccCCcchhhHhhh-----cCCCCceEEEEecCchhh--HhhhhhhhhcccceeeEeccc------
Q 045968          171 AIGYDRFHEAPEDSVLFGGGEVLIQELL-----GLKYLEVLELSLGSYHAL--QILLSSNKLKSCIRSLCLDGF------  237 (402)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~------  237 (402)
                      +|.+..               ..+..+.     ..++|+.|+++++.....  ..++......++|+.|++++|      
T Consensus       179 ~n~i~~---------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          179 NNDINE---------------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             SSBCHH---------------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             CCCcch---------------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            776532               1222221     245777777776544331  123333444556666666665      


Q ss_pred             -------------eeeeEeccccccccC----CCC-ccccccccEEecccccCcccCc--ccc-----cCCCCCEEeecC
Q 045968          238 -------------ELEELKIDYTEIVRK----RRE-PFVFRNLHRVTMVLCHKLKDVT--FLV-----FAPNLKSLDLDG  292 (402)
Q Consensus       238 -------------~L~~L~i~~~~~~~~----~~~-~~~~~~L~~L~l~~~~~l~~l~--~~~-----~l~~L~~L~l~~  292 (402)
                                   +|++|+++++.....    .+. -..+++|++|+++++ .+++..  .+.     ..++|++|++++
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCC
Confidence                         355555554433211    010 002455555555555 333211  111     124555555555


Q ss_pred             CcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccC------ccCCCCccEEEecCCCCCC
Q 045968          293 CDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWK------PLPFTRLKEMAVLGCDQLE  357 (402)
Q Consensus       293 c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~------~~~~~~L~~L~i~~c~~L~  357 (402)
                      |..-.....        .....+..+++|+.|+++++ .+.+....      ....++|++|++++| +++
T Consensus       323 n~l~~~~~~--------~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~  383 (461)
T 1z7x_W          323 CSFTAACCS--------HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS  383 (461)
T ss_dssp             SCCBGGGHH--------HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred             CCCchHHHH--------HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence            542211000        01123445678888888876 34332111      112578888888776 344

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=6.9e-17  Score=151.66  Aligned_cols=233  Identities=16%  Similarity=0.113  Sum_probs=119.1

Q ss_pred             CCCCEEEccCCCccccccccccccccccccEEEecCCCCcc--ccHhhhcCCCCcEEEccCCCCccc-cchhhhhCCCCC
Q 045968           88 PSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITE--LPEELKKLVNLKCLNLRWTGALIR-IPRQLISKFSRL  164 (402)
Q Consensus        88 ~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L  164 (402)
                      +++++|++.++  .+...+..+..+. +|++|++++|.+..  ++..+..+++|++|++++| .++. .+. .+.++++|
T Consensus        70 ~~l~~L~l~~n--~l~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~-~l~~~~~L  144 (336)
T 2ast_B           70 QGVIAFRCPRS--FMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVN-TLAKNSNL  144 (336)
T ss_dssp             TTCSEEECTTC--EECSCCCSCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHH-HHTTCTTC
T ss_pred             ccceEEEcCCc--cccccchhhccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHH-HHhcCCCC
Confidence            55666666665  5554433344444 66666666655442  4444555666666666654 3332 222 25556666


Q ss_pred             cEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEec-CchhhHhhhhhhhhcc-cceeeEeccceeeeE
Q 045968          165 RVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLG-SYHALQILLSSNKLKS-CIRSLCLDGFELEEL  242 (402)
Q Consensus       165 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~-~L~~L~l~~~~L~~L  242 (402)
                      ++|++.+|....             .......+..+++|+.|+++++ .... ..+......++ +|+.|.+++|.+   
T Consensus       145 ~~L~L~~~~~l~-------------~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~~L~~L~l~~~~~---  207 (336)
T 2ast_B          145 VRLNLSGCSGFS-------------EFALQTLLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETITQLNLSGYRK---  207 (336)
T ss_dssp             SEEECTTCBSCC-------------HHHHHHHHHHCTTCCEEECCCCTTCCH-HHHHHHHHHSCTTCCEEECCSCGG---
T ss_pred             CEEECCCCCCCC-------------HHHHHHHHhcCCCCCEEcCCCCCCcCh-HHHHHHHHhcccCCCEEEeCCCcc---
Confidence            666666552211             1112223445556666666544 2221 11122222233 343333333310   


Q ss_pred             eccccccccCCCCccccccccEEecccccCccc--CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCc
Q 045968          243 KIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKD--VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFEN  320 (402)
Q Consensus       243 ~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~  320 (402)
                      .++.   ...+.....+++|+.|++++|..+++  ++.+..+++|++|++++|..+...           ....+..+++
T Consensus       208 ~~~~---~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----------~~~~l~~~~~  273 (336)
T 2ast_B          208 NLQK---SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-----------TLLELGEIPT  273 (336)
T ss_dssp             GSCH---HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-----------GGGGGGGCTT
T ss_pred             cCCH---HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-----------HHHHHhcCCC
Confidence            0000   00001111688899999998854554  457778899999999998744332           1134667899


Q ss_pred             cceeecCccccccccccCccCCCCccEEEecCCCCCCCCC
Q 045968          321 LQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLP  360 (402)
Q Consensus       321 L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp  360 (402)
                      |+.|++++|  +..-..... ..+|+.|++ .|.+++.+.
T Consensus       274 L~~L~l~~~--i~~~~~~~l-~~~l~~L~l-~~n~l~~~~  309 (336)
T 2ast_B          274 LKTLQVFGI--VPDGTLQLL-KEALPHLQI-NCSHFTTIA  309 (336)
T ss_dssp             CCEEECTTS--SCTTCHHHH-HHHSTTSEE-SCCCSCCTT
T ss_pred             CCEEeccCc--cCHHHHHHH-HhhCcceEE-ecccCcccc
Confidence            999999988  322111110 123555556 566777653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=1.8e-16  Score=141.64  Aligned_cols=84  Identities=20%  Similarity=0.309  Sum_probs=53.2

Q ss_pred             CCCEEEccCCCcccccccc-ccccccccccEEEecCCC-CccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCc
Q 045968           89 SLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDISCTG-ITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLR  165 (402)
Q Consensus        89 ~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  165 (402)
                      +|++|++++|  .++.++. .+..+. +|++|++++|. +..++. .+..+++|++|++++|+.++.++...+.++++|+
T Consensus        32 ~l~~L~l~~n--~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           32 STQTLKLIET--HLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TCCEEEEESC--CCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             cccEEEEeCC--cceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            5666666666  6666543 455555 66667776664 666654 3566667777777665566666654466677777


Q ss_pred             EEEeeeeccc
Q 045968          166 VLRMFAIGYD  175 (402)
Q Consensus       166 ~L~l~~~~~~  175 (402)
                      +|++.+|.+.
T Consensus       109 ~L~l~~n~l~  118 (239)
T 2xwt_C          109 FLGIFNTGLK  118 (239)
T ss_dssp             EEEEEEECCC
T ss_pred             EEeCCCCCCc
Confidence            7777766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=4.1e-16  Score=142.33  Aligned_cols=217  Identities=21%  Similarity=0.223  Sum_probs=146.3

Q ss_pred             EEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccccccEEEecCC
Q 045968           46 LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLDISCT  124 (402)
Q Consensus        46 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~  124 (402)
                      ++..+..+..+|... .++|++|++++| .+..++...|.++++|++|++++|  .+..++ ..+..+. +|++|++++|
T Consensus        12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~-~L~~L~L~~n   86 (276)
T 2z62_A           12 YQCMELNFYKIPDNL-PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLS-HLSTLILTGN   86 (276)
T ss_dssp             EECTTSCCSSCCSSS-CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC--CCCEECTTTTTTCT-TCCEEECTTC
T ss_pred             EEecCCCccccCCCC-CCCccEEECCCC-cccccCHhHhccccCCcEEECCCC--cCCccCHHHccCCc-CCCEEECCCC
Confidence            445555666666532 257999999988 788877766889999999999999  888774 4677787 9999999999


Q ss_pred             CCcccc-HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCC
Q 045968          125 GITELP-EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYL  203 (402)
Q Consensus       125 ~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  203 (402)
                      .+..++ ..+..+++|++|++.+ +.++.++...+.++++|++|++.+|.+...              .....+..+++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~l~~~~~~l~~L  151 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSF--------------KLPEYFSNLTNL  151 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGGCTTC
T ss_pred             ccCccChhhhcCCccccEEECCC-CCccccCchhcccCCCCCEEECcCCcccee--------------cCchhhccCCCC
Confidence            888776 4588899999999988 567776654488899999999988877521              112345566667


Q ss_pred             ceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcccccccc----EEecccccCcccCc-c
Q 045968          204 EVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLH----RVTMVLCHKLKDVT-F  278 (402)
Q Consensus       204 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~l~-~  278 (402)
                      +.|+++++.                          ++.+.....        . .+++|+    .|+++++ .++.++ .
T Consensus       152 ~~L~Ls~N~--------------------------l~~~~~~~~--------~-~l~~L~~l~l~L~ls~n-~l~~~~~~  195 (276)
T 2z62_A          152 EHLDLSSNK--------------------------IQSIYCTDL--------R-VLHQMPLLNLSLDLSLN-PMNFIQPG  195 (276)
T ss_dssp             CEEECCSSC--------------------------CCEECGGGG--------H-HHHTCTTCCEEEECCSS-CCCEECTT
T ss_pred             CEEECCCCC--------------------------CCcCCHHHh--------h-hhhhccccceeeecCCC-cccccCcc
Confidence            766666442                          222211000        0 233344    6777777 565553 3


Q ss_pred             cccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          279 LVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       279 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                      .....+|++|++++|. ++.++.           ..+..+++|+.|++++++
T Consensus       196 ~~~~~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          196 AFKEIRLKELALDTNQ-LKSVPD-----------GIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             SSCSCCEEEEECCSSC-CSCCCT-----------TTTTTCCSCCEEECCSSC
T ss_pred             ccCCCcccEEECCCCc-eeecCH-----------hHhcccccccEEEccCCc
Confidence            3344578888888865 333321           245667788888887643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=8.8e-17  Score=162.60  Aligned_cols=298  Identities=14%  Similarity=0.075  Sum_probs=148.3

Q ss_pred             CCccceEEEccCCccccc--CCCCC-CCc-cceEecccccccccc-chHHhccCCCCCEEEccCCCcccccc-----ccc
Q 045968           39 GWENVRRLSLMQNQIETV--SEVPT-CPH-LLTLFLDFNQELEMI-ADGFFQLMPSLKVLKMSNCGQGRLKL-----PVG  108 (402)
Q Consensus        39 ~~~~l~~L~l~~~~~~~~--~~~~~-~~~-L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~i~~l-----~~~  108 (402)
                      .+++|+.|+++++.+...  ..... ++. |++|++.+|..+... ....+..+++|++|++++|  .+...     +..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~--~~~~~~~~~l~~~  187 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES--SFSEKDGKWLHEL  187 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC--EEECCCSHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc--cccCcchhHHHHH
Confidence            467788888887765431  11112 334 777777766433221 1222456777777777777  54322     112


Q ss_pred             cccccccccEEEecCCCCc-----cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc------
Q 045968          109 MSVLGSSLELLDISCTGIT-----ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF------  177 (402)
Q Consensus       109 ~~~l~~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------  177 (402)
                      ...++ +|++|++++|.+.     .++..+.++++|+.|++.+| .+..++. .+.++++|++|++........      
T Consensus       188 ~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~  264 (592)
T 3ogk_B          188 AQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVG-FFKAAANLEEFCGGSLNEDIGMPEKYM  264 (592)
T ss_dssp             HHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred             HhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHH-HHhhhhHHHhhcccccccccchHHHHH
Confidence            23344 6666666666554     23333455666666666663 3344443 244555555555542111000      


Q ss_pred             ---------------------cc------CCCcccccCC--cchhh-HhhhcCCCCceEEEEecCchhhHhhhhhhhhcc
Q 045968          178 ---------------------HE------APEDSVLFGG--GEVLI-QELLGLKYLEVLELSLGSYHALQILLSSNKLKS  227 (402)
Q Consensus       178 ---------------------~~------~~~~~~~~~~--~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  227 (402)
                                           +.      .....+++..  ....+ ..+..+++|+.|.+.  .......+......++
T Consensus       265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~  342 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCK  342 (592)
T ss_dssp             CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCT
T ss_pred             HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCC
Confidence                                 00      0000000000  11111 224556666666665  2222223333334455


Q ss_pred             cceeeEecc----------c----------------eeeeEeccccccccCCCC--ccccccccEEeccc---ccCcccC
Q 045968          228 CIRSLCLDG----------F----------------ELEELKIDYTEIVRKRRE--PFVFRNLHRVTMVL---CHKLKDV  276 (402)
Q Consensus       228 ~L~~L~l~~----------~----------------~L~~L~i~~~~~~~~~~~--~~~~~~L~~L~l~~---~~~l~~l  276 (402)
                      +|+.|++++          |                +|++|.+..+........  ...+++|++|++++   |..+++.
T Consensus       343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence            666666662          2                566666633322111000  10366777777763   3355543


Q ss_pred             c-------ccccCCCCCEEeecCCcc-hHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc--ccccCccCCCCcc
Q 045968          277 T-------FLVFAPNLKSLDLDGCDA-MEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE--SIYWKPLPFTRLK  346 (402)
Q Consensus       277 ~-------~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~i~~~~~~~~~L~  346 (402)
                      +       .+..+++|+.|++++|.+ +.+...          ......+++|+.|++++|. +.  .++.....+++|+
T Consensus       423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----------~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~  491 (592)
T 3ogk_B          423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----------SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQ  491 (592)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH----------HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCC
T ss_pred             hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH----------HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccC
Confidence            1       134578888888876653 222211          0122347889999998765 42  2333345679999


Q ss_pred             EEEecCCC
Q 045968          347 EMAVLGCD  354 (402)
Q Consensus       347 ~L~i~~c~  354 (402)
                      +|++++|+
T Consensus       492 ~L~l~~n~  499 (592)
T 3ogk_B          492 KLEMRGCC  499 (592)
T ss_dssp             EEEEESCC
T ss_pred             eeeccCCC
Confidence            99999886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.67  E-value=6.9e-16  Score=140.47  Aligned_cols=170  Identities=22%  Similarity=0.355  Sum_probs=139.0

Q ss_pred             CcEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968           21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~   98 (402)
                      ...+......+..+|... ..+++.|++++|.+..++.  ...+++|++|++++| .+..++..+|..+++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC
Confidence            356777777888887532 2689999999999998875  478999999999998 888888887899999999999999


Q ss_pred             Ccccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccc
Q 045968           99 GQGRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus        99 ~~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  176 (402)
                        .+..++. .+..+. +|++|++++|.+..++.. +..+++|++|++++ +.++.++...+..+++|++|++.+|.+..
T Consensus        96 --~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           96 --KLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             --CCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             --cCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcE
Confidence              8988854 567788 999999999999988765 78999999999999 58888888768999999999999988753


Q ss_pred             cccCCCcccccCCcchhhHhhhcCCCCceEEEEec
Q 045968          177 FHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLG  211 (402)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  211 (402)
                      .               ....+..+++|+.|+++.+
T Consensus       172 ~---------------~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          172 V---------------PEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             C---------------CTTTTTTCTTCCEEECCSS
T ss_pred             e---------------ChhHhccCCCcCEEECCCC
Confidence            2               1223555667777776644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=7.6e-17  Score=151.38  Aligned_cols=221  Identities=17%  Similarity=0.103  Sum_probs=140.2

Q ss_pred             cceEEEccCCcccccCCCCCC--CccceEeccccccccccchHHhccCCCCCEEEccCCCccccc--ccccccccccccc
Q 045968           42 NVRRLSLMQNQIETVSEVPTC--PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK--LPVGMSVLGSSLE  117 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~~L~  117 (402)
                      .++.++++++.+.. .....+  ++++.+.+.+| .+...+.. +..+++|++|++++|  .+..  ++..+..++ +|+
T Consensus        48 ~~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~--~l~~~~~~~~~~~~~-~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNS--VIEVSTLHGILSQCS-KLQ  121 (336)
T ss_dssp             TSSEEECTTCBCCH-HHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTC--EECHHHHHHHHTTBC-CCS
T ss_pred             hheeeccccccCCH-HHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCC--CcCHHHHHHHHhhCC-CCC
Confidence            46677777765542 111233  67788888877 55554444 556788888888888  6653  556666676 888


Q ss_pred             EEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccc--cchhhhhCCCCCcEEEeeee-cccccccCCCcccccCCcchh
Q 045968          118 LLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIR--IPRQLISKFSRLRVLRMFAI-GYDRFHEAPEDSVLFGGGEVL  193 (402)
Q Consensus       118 ~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~  193 (402)
                      +|++++|.+. ..+..+..+++|++|++++|..++.  ++. .+.++++|++|++.+| .+.              ....
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~--------------~~~~  186 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFT--------------EKHV  186 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCC--------------HHHH
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcC--------------hHHH
Confidence            8888888776 4556677788888888888655654  444 3677888888888887 553              2223


Q ss_pred             hHhhhcCC-CCceEEEEecCc-hhhHhhhhhhhhcccceeeEeccceeeeEecccccc-c-cCCCCccccccccEEeccc
Q 045968          194 IQELLGLK-YLEVLELSLGSY-HALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEI-V-RKRREPFVFRNLHRVTMVL  269 (402)
Q Consensus       194 ~~~l~~l~-~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~-~-~~~~~~~~~~~L~~L~l~~  269 (402)
                      ...+..++ +|+.|+++++.. -....++.....+++          |++|+++++.. . ..+..-..+++|+.|++++
T Consensus       187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~----------L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  256 (336)
T 2ast_B          187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN----------LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  256 (336)
T ss_dssp             HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT----------CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC----------CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence            34466777 888888876531 111222333333344          44444444431 1 1111111689999999999


Q ss_pred             ccCccc--CcccccCCCCCEEeecCC
Q 045968          270 CHKLKD--VTFLVFAPNLKSLDLDGC  293 (402)
Q Consensus       270 ~~~l~~--l~~~~~l~~L~~L~l~~c  293 (402)
                      |..+++  +..+..+++|++|++++|
T Consensus       257 ~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          257 CYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            965544  235778999999999998

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.66  E-value=8.5e-16  Score=140.02  Aligned_cols=196  Identities=17%  Similarity=0.187  Sum_probs=134.3

Q ss_pred             CCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-cccccc
Q 045968           35 PDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLG  113 (402)
Q Consensus        35 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~  113 (402)
                      .....+++++.|++.++.+..++....+++|++|++++| .+..++.  +..+++|++|++++|  .++.++. .+..+.
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           35 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDISA--LKELTNLTYLILTGN--QLQSLPNGVFDKLT  109 (272)
T ss_dssp             ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECTTS--CCCCCCTTTTTTCT
T ss_pred             cccccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCchh--hcCCCCCCEEECCCC--ccCccChhHhcCCc
Confidence            344556778888888888887777778888888888887 6666542  778888888888888  7777643 456677


Q ss_pred             ccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcch
Q 045968          114 SSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEV  192 (402)
Q Consensus       114 ~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  192 (402)
                       +|++|++++|.+..++.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...               
T Consensus       110 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------  172 (272)
T 3rfs_A          110 -NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQSL---------------  172 (272)
T ss_dssp             -TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------
T ss_pred             -CCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCCCcCcc---------------
Confidence             888888888888777655 67788888888888 467777765567888888888888876431               


Q ss_pred             hhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccc
Q 045968          193 LIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLC  270 (402)
Q Consensus       193 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~  270 (402)
                      ....+..+++|+.|+++.+....+..  .....++          +|++|++.++....      .+++|+.+.+..+
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~----------~L~~L~l~~N~~~~------~~~~l~~l~~~~n  232 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLT----------SLQYIWLHDNPWDC------TCPGIRYLSEWIN  232 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCT----------TCCEEECCSSCBCC------CTTTTHHHHHHHH
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCH--HHHhCCc----------CCCEEEccCCCccc------cCcHHHHHHHHHH
Confidence            22235667788888888776665432  1112223          44455555543311      4666777766655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.65  E-value=2e-16  Score=144.15  Aligned_cols=173  Identities=23%  Similarity=0.345  Sum_probs=140.5

Q ss_pred             cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      +...+......+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..+++..+..+++|++|++++| 
T Consensus        42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-  119 (272)
T 3rfs_A           42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-  119 (272)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred             ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-
Confidence            345666777777778888888999999999999888877788999999999988 788888777889999999999999 


Q ss_pred             cccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968          100 QGRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       100 ~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                       .++.++. .+..+. +|++|++++|.+..++.. +..+++|+.|++++ +.++.++...+..+++|++|++.+|.+...
T Consensus       120 -~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          120 -QLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             -CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -cCCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence             8887754 467777 999999999988888765 57889999999998 477787776678899999999998887532


Q ss_pred             ccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968          178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS  212 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  212 (402)
                                     ....+..+++|+.|++.++.
T Consensus       197 ---------------~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          197 ---------------PDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             ---------------CTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------CHHHHhCCcCCCEEEccCCC
Confidence                           22346678889999988654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.64  E-value=6e-16  Score=156.46  Aligned_cols=85  Identities=14%  Similarity=0.251  Sum_probs=48.9

Q ss_pred             ccccccEEecccccCccc--Cccccc-CCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccc
Q 045968          258 VFRNLHRVTMVLCHKLKD--VTFLVF-APNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLES  334 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~--l~~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~  334 (402)
                      .+++|+.|++++  .+++  +..+.. +++|+.|++++|..-.....           .....+++|+.|++++|+.-..
T Consensus       430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSCCHH
T ss_pred             hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCCcHH
Confidence            355666666644  2333  222332 67777777777653221111           1225588899999988875211


Q ss_pred             -cccCccCCCCccEEEecCCCC
Q 045968          335 -IYWKPLPFTRLKEMAVLGCDQ  355 (402)
Q Consensus       335 -i~~~~~~~~~L~~L~i~~c~~  355 (402)
                       +......+++|+.|++++|+.
T Consensus       497 ~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          497 ALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHHHhCCCCCEEeeeCCCC
Confidence             122334578999999988865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.63  E-value=1.2e-15  Score=140.42  Aligned_cols=117  Identities=15%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             EccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCC
Q 045968           47 SLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGI  126 (402)
Q Consensus        47 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l  126 (402)
                      .+..+.+.++.....+++|+.|.+++| .+..++.  +..+++|++|++++|  .++.++. +..+. +|++|++++|.+
T Consensus        30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n--~l~~~~~-l~~l~-~L~~L~l~~n~l  102 (291)
T 1h6t_A           30 NLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN--KLTDIKP-LANLK-NLGWLFLDENKV  102 (291)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS--CCCCCGG-GTTCT-TCCEEECCSSCC
T ss_pred             HhcCCCcccccchhhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCC--ccCCCcc-cccCC-CCCEEECCCCcC
Confidence            333333333333344555555555555 4444433  455555555555555  5555433 44454 555555555555


Q ss_pred             ccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          127 TELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       127 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      ..++. +..+++|++|++++ +.++.++.  +..+++|++|++.+|.+
T Consensus       103 ~~~~~-l~~l~~L~~L~L~~-n~i~~~~~--l~~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A          103 KDLSS-LKDLKKLKSLSLEH-NGISDING--LVHLPQLESLYLGNNKI  146 (291)
T ss_dssp             CCGGG-GTTCTTCCEEECTT-SCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             CCChh-hccCCCCCEEECCC-CcCCCChh--hcCCCCCCEEEccCCcC
Confidence            55432 55555555555555 34444432  55555555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.63  E-value=3.4e-16  Score=150.02  Aligned_cols=234  Identities=15%  Similarity=0.088  Sum_probs=111.7

Q ss_pred             CCCCccceEeccccccccccchH----HhccCCCCCEEEccCCCccccc----ccccc-------ccccccccEEEecCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADG----FFQLMPSLKVLKMSNCGQGRLK----LPVGM-------SVLGSSLELLDISCT  124 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~i~~----l~~~~-------~~l~~~L~~L~L~~~  124 (402)
                      ..+++|++|++++| .+......    .+..+++|++|++++|  .+..    +|..+       ..+. +|++|++++|
T Consensus        29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~--~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n  104 (386)
T 2ca6_A           29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI--FTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDN  104 (386)
T ss_dssp             HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC--CTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSC
T ss_pred             hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc--ccCccccchhHHHHHHHHHHhhCC-cccEEECCCC
Confidence            34555666666655 44332211    1445666666666665  3322    12222       3444 6666666666


Q ss_pred             CCcc-----ccHhhhcCCCCcEEEccCCCCccccchhh----hhCC---------CCCcEEEeeeecccccccCCCcccc
Q 045968          125 GITE-----LPEELKKLVNLKCLNLRWTGALIRIPRQL----ISKF---------SRLRVLRMFAIGYDRFHEAPEDSVL  186 (402)
Q Consensus       125 ~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~  186 (402)
                      .+..     +|..+..+++|++|++++| .++..+...    +..+         ++|++|++.+|.+...         
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~---------  174 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---------  174 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---------
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---------
Confidence            5553     4445566666666666663 333221111    2222         5666666666655310         


Q ss_pred             cCCcch-hhHhhhcCCCCceEEEEecCchhh--Hhhhh-hhhhcccceeeEeccceeeeEeccccccccCCC--Cccccc
Q 045968          187 FGGGEV-LIQELLGLKYLEVLELSLGSYHAL--QILLS-SNKLKSCIRSLCLDGFELEELKIDYTEIVRKRR--EPFVFR  260 (402)
Q Consensus       187 ~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~-~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~--~~~~~~  260 (402)
                         ... ....+..+++|+.|.++.+.....  ..+.. .....++|+.|++++|.+..-.      ...++  .. .++
T Consensus       175 ---~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g------~~~l~~~l~-~~~  244 (386)
T 2ca6_A          175 ---SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG------SSALAIALK-SWP  244 (386)
T ss_dssp             ---GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH------HHHHHHHGG-GCT
T ss_pred             ---HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH------HHHHHHHHc-cCC
Confidence               001 112345556666666665443311  11111 2222233333333322211000      00011  01 567


Q ss_pred             cccEEecccccCcccC------ccc--ccCCCCCEEeecCCcchHH----HhhcCCCCCCccccCCC-CCCCccceeecC
Q 045968          261 NLHRVTMVLCHKLKDV------TFL--VFAPNLKSLDLDGCDAMEE----IISVGKFAETPEMMGHI-SPFENLQRLNLE  327 (402)
Q Consensus       261 ~L~~L~l~~~~~l~~l------~~~--~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~  327 (402)
                      +|++|++++| .++..      ..+  ..+++|++|++++|..-..    ++.            .+ ..+++|+.|+++
T Consensus       245 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          245 NLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VIDEKMPDLLFLELN  311 (386)
T ss_dssp             TCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHHHHCTTCCEEECT
T ss_pred             CcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHHhcCCCceEEEcc
Confidence            7888888777 45553      233  2377888888888665431    321            22 456788888888


Q ss_pred             ccc
Q 045968          328 DLP  330 (402)
Q Consensus       328 ~c~  330 (402)
                      +|+
T Consensus       312 ~N~  314 (386)
T 2ca6_A          312 GNR  314 (386)
T ss_dssp             TSB
T ss_pred             CCc
Confidence            764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=4.7e-15  Score=140.17  Aligned_cols=228  Identities=14%  Similarity=0.137  Sum_probs=125.8

Q ss_pred             cccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEEecCCCCc-cccHh-hhcCCCCcEEEccCCCCcc
Q 045968           75 ELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDISCTGIT-ELPEE-LKKLVNLKCLNLRWTGALI  151 (402)
Q Consensus        75 ~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L~~~~l~-~lp~~-i~~l~~L~~L~l~~~~~~~  151 (402)
                      ++..+|.. +  .+++++|++++|  .++.+|. .|..+. +|++|+|++|.+. .+|.. +.++++|+++.+..++.++
T Consensus        20 ~Lt~iP~~-l--~~~l~~L~Ls~N--~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           20 KVTEIPSD-L--PRNAIELRFVLT--KLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             TCCSCCTT-C--CTTCSEEEEESC--CCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             CCCccCcC-c--CCCCCEEEccCC--cCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            44555543 2  245666666666  5666543 355555 6666666666543 34433 4555565554444445666


Q ss_pred             ccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhh--hhhcccc
Q 045968          152 RIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSS--NKLKSCI  229 (402)
Q Consensus       152 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L  229 (402)
                      .++.+++.++++|++|++.+|.+...+              . .......++..+.+..+  ..+..++..  ...... 
T Consensus        94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~--------------~-~~~~~~~~l~~l~l~~~--~~i~~l~~~~f~~~~~~-  155 (350)
T 4ay9_X           94 YINPEAFQNLPNLQYLLISNTGIKHLP--------------D-VHKIHSLQKVLLDIQDN--INIHTIERNSFVGLSFE-  155 (350)
T ss_dssp             EECTTSBCCCTTCCEEEEEEECCSSCC--------------C-CTTCCBSSCEEEEEESC--TTCCEECTTSSTTSBSS-
T ss_pred             ccCchhhhhccccccccccccccccCC--------------c-hhhcccchhhhhhhccc--cccccccccchhhcchh-
Confidence            665544666666666666666554210              0 01112223334444321  111111110  111122 


Q ss_pred             eeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCC
Q 045968          230 RSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAE  307 (402)
Q Consensus       230 ~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  307 (402)
                               ++.|+++++......+..+...+|+.|.+.++..++.++  .+..+++|++|++++|. ++.++       
T Consensus       156 ---------l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp-------  218 (350)
T 4ay9_X          156 ---------SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP-------  218 (350)
T ss_dssp             ---------CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCC-------
T ss_pred             ---------hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccC-------
Confidence                     333444444333333332256688889988766788876  46788999999999864 44442       


Q ss_pred             CccccCCCCCCCccceeecCccccccccccCccCCCCccEEEec
Q 045968          308 TPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVL  351 (402)
Q Consensus       308 ~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~  351 (402)
                             ...|.+|+.|.+.++.+++.++. ...+++|+.+++.
T Consensus       219 -------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          219 -------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             -------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             -------hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence                   24577888888888888888875 4557889998884

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.62  E-value=4.5e-15  Score=133.52  Aligned_cols=171  Identities=23%  Similarity=0.303  Sum_probs=136.3

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+..+..+|.... ++++.|++++|.+..++.  ...+++|++|++++| .+..+++..|..+++|++|++++| 
T Consensus        17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-   93 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-   93 (251)
T ss_dssp             TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred             eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-
Confidence            456667777777775332 689999999999888765  378899999999988 777777776889999999999999 


Q ss_pred             ccccccc-cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968          100 QGRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       100 ~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                       .++.++ ..+..+. +|++|++++|.+..+|.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...
T Consensus        94 -~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           94 -QLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             -CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -cccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence             888775 4567777 999999999999888776 57899999999998 588888876688999999999999887532


Q ss_pred             ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCc
Q 045968          178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSY  213 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  213 (402)
                                     ....+..+++|+.|.++++..
T Consensus       171 ---------------~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          171 ---------------PHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             ---------------CTTTTTTCTTCCEEECCSCCB
T ss_pred             ---------------CHHHHhCCCCCCEEEeeCCce
Confidence                           223466778888888886654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.62  E-value=6.3e-16  Score=156.34  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=81.7

Q ss_pred             CCccceEEEccCCccccc--CCC-CCCCccceEecccccccccc-chHHhccCCCCCEEEccCCCcccccc-----cccc
Q 045968           39 GWENVRRLSLMQNQIETV--SEV-PTCPHLLTLFLDFNQELEMI-ADGFFQLMPSLKVLKMSNCGQGRLKL-----PVGM  109 (402)
Q Consensus        39 ~~~~l~~L~l~~~~~~~~--~~~-~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~i~~l-----~~~~  109 (402)
                      .+++|+.|+++++.+...  ... ..+++|++|++.+|..+... ...++..+++|++|++++|  .++..     +...
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES--DVDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC--EEECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC--ccCCcchHHHHHHh
Confidence            456788888888766542  112 25788999998888555542 2333567889999999888  65542     2222


Q ss_pred             ccccccccEEEecCCC--Cc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968          110 SVLGSSLELLDISCTG--IT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA  171 (402)
Q Consensus       110 ~~l~~~L~~L~L~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  171 (402)
                      ..+. +|++|++++|.  +.  .++..+.++++|++|++.+|..++.++.. +.++++|++|++..
T Consensus       181 ~~~~-~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          181 DTYT-SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGG  244 (594)
T ss_dssp             TTCC-CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSB
T ss_pred             hcCC-cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEccccc
Confidence            2445 88888888875  22  22223456788888888887555555442 55666666666443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=1.5e-15  Score=141.22  Aligned_cols=223  Identities=19%  Similarity=0.188  Sum_probs=162.8

Q ss_pred             cceEEEccCCccccc--CCCC--------CCCccceEecccccccc-ccchHHh-ccCCCCCEEEccCCCcccccccccc
Q 045968           42 NVRRLSLMQNQIETV--SEVP--------TCPHLLTLFLDFNQELE-MIADGFF-QLMPSLKVLKMSNCGQGRLKLPVGM  109 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~--~~~~--------~~~~L~~L~l~~~~~l~-~~~~~~~-~~l~~L~~L~l~~~~~~i~~l~~~~  109 (402)
                      .++.|++++|.+...  +...        .+++|++|++++| .+. .+|..++ ..+++|++|++++|  .++..|..+
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~  140 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV--SWATRDAWL  140 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC--BCSSSSSHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC--CCcchhHHH
Confidence            488899999988653  3222        5899999999999 665 5666533 88999999999999  888878777


Q ss_pred             ccc-----cccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccc--cchhhh--hCCCCCcEEEeeeeccccccc
Q 045968          110 SVL-----GSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIR--IPRQLI--SKFSRLRVLRMFAIGYDRFHE  179 (402)
Q Consensus       110 ~~l-----~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--~~~~~l--~~l~~L~~L~l~~~~~~~~~~  179 (402)
                      +.+     . +|++|++++|.+..++ ..+..+++|++|++++|.....  ++.. +  ..+++|++|++.+|.+...  
T Consensus       141 ~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~--  216 (312)
T 1wwl_A          141 AELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGMETP--  216 (312)
T ss_dssp             HHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCCH--
T ss_pred             HHHHHhhcC-CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCcch--
Confidence            776     5 9999999999999887 5689999999999999643333  2332 3  7899999999999988521  


Q ss_pred             CCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcccc
Q 045968          180 APEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVF  259 (402)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~  259 (402)
                                .......+..+++|+.|+++.+......... .....+          +|++|+++++..... |.. .+
T Consensus       217 ----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~----------~L~~L~Ls~N~l~~i-p~~-~~  273 (312)
T 1wwl_A          217 ----------SGVCSALAAARVQLQGLDLSHNSLRDAAGAP-SCDWPS----------QLNSLNLSFTGLKQV-PKG-LP  273 (312)
T ss_dssp             ----------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-CCCCCT----------TCCEEECTTSCCSSC-CSS-CC
T ss_pred             ----------HHHHHHHHhcCCCCCEEECCCCcCCcccchh-hhhhcC----------CCCEEECCCCccChh-hhh-cc
Confidence                      1112233457899999999876544422111 111123          455566666555433 333 24


Q ss_pred             ccccEEecccccCcccCcccccCCCCCEEeecCCcc
Q 045968          260 RNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDA  295 (402)
Q Consensus       260 ~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~  295 (402)
                      ++|+.|+++++ .++.++.+..+++|++|++++|+.
T Consensus       274 ~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          274 AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTT
T ss_pred             CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCC
Confidence            89999999998 788888888999999999999754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.62  E-value=4.4e-16  Score=149.21  Aligned_cols=247  Identities=15%  Similarity=0.085  Sum_probs=165.2

Q ss_pred             cccccchHHhccCCCCCEEEccCCCcccccc-----ccccccccccccEEEecCCCCc----cccHhh-------hcCCC
Q 045968           75 ELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-----PVGMSVLGSSLELLDISCTGIT----ELPEEL-------KKLVN  138 (402)
Q Consensus        75 ~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-----~~~~~~l~~~L~~L~L~~~~l~----~lp~~i-------~~l~~  138 (402)
                      .+..++.. +..+++|++|++++|  .+...     +..+..+. +|++|++++|.+.    .+|..+       ..+++
T Consensus        20 ~~~~l~~~-l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           20 DEKSVFAV-LLEDDSVKEIVLSGN--TIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             HHHTTSHH-HHHCSCCCEEECTTS--EECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHH-HhcCCCccEEECCCC--CCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence            44555555 888999999999999  77743     33466777 9999999998655    344444       68899


Q ss_pred             CcEEEccCCCCccc-----cchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcch-hhHhhhcC---------CCC
Q 045968          139 LKCLNLRWTGALIR-----IPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEV-LIQELLGL---------KYL  203 (402)
Q Consensus       139 L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l---------~~L  203 (402)
                      |++|++++| .++.     ++.. +..+++|++|++.+|.+...            ... ....+..+         ++|
T Consensus        96 L~~L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~------------~~~~l~~~l~~l~~~~~~~~~~~L  161 (386)
T 2ca6_A           96 LHTVRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQ------------AGAKIARALQELAVNKKAKNAPPL  161 (386)
T ss_dssp             CCEEECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHH------------HHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ccEEECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHH------------HHHHHHHHHHHHhhhhhcccCCCC
Confidence            999999995 5555     5544 88999999999999987421            111 12224444         899


Q ss_pred             ceEEEEecCch--hhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCC-CccccccccEEecccccCcc-----c
Q 045968          204 EVLELSLGSYH--ALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRR-EPFVFRNLHRVTMVLCHKLK-----D  275 (402)
Q Consensus       204 ~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~-----~  275 (402)
                      +.|.++++...  .+..+.......++|+.|.+++|.+..-.+.     ...+ ....+++|+.|++++| .++     .
T Consensus       162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~-----~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~  235 (386)
T 2ca6_A          162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE-----HLLLEGLAYCQELKVLDLQDN-TFTHLGSSA  235 (386)
T ss_dssp             CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH-----HHHHTTGGGCTTCCEEECCSS-CCHHHHHHH
T ss_pred             cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHH-----HHHHHHhhcCCCccEEECcCC-CCCcHHHHH
Confidence            99999977654  3444444444555666666555544311100     0111 1116899999999998 564     2


Q ss_pred             Cc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCC--CCCCccceeecCccccccc-----cccCc-cCCCCcc
Q 045968          276 VT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI--SPFENLQRLNLEDLPNLES-----IYWKP-LPFTRLK  346 (402)
Q Consensus       276 l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~-----i~~~~-~~~~~L~  346 (402)
                      ++ .+..+++|++|++++|..-.....        .....+  +.+++|+.|++++|. +..     ++... ..+++|+
T Consensus       236 l~~~l~~~~~L~~L~L~~n~i~~~~~~--------~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          236 LAIALKSWPNLRELGLNDCLLSARGAA--------AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHH--------HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHccCCCcCEEECCCCCCchhhHH--------HHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCce
Confidence            33 567899999999999874332110        001123  448999999999975 433     55443 4479999


Q ss_pred             EEEecCCC
Q 045968          347 EMAVLGCD  354 (402)
Q Consensus       347 ~L~i~~c~  354 (402)
                      .|++++|+
T Consensus       307 ~L~l~~N~  314 (386)
T 2ca6_A          307 FLELNGNR  314 (386)
T ss_dssp             EEECTTSB
T ss_pred             EEEccCCc
Confidence            99998875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.62  E-value=3.6e-15  Score=140.98  Aligned_cols=237  Identities=21%  Similarity=0.180  Sum_probs=160.2

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEE-EccCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVL-KMSNC   98 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L-~l~~~   98 (402)
                      ..+...+.++.++|.-- .++++.|++++|.++.++..  ..+++|++|++++|...+.++..+|.+++++..+ .+.+|
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            45666777888887522 36899999999999998753  7899999999999844566777778889887764 45556


Q ss_pred             Ccccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCC-CCcEEEeeeeccc
Q 045968           99 GQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFS-RLRVLRMFAIGYD  175 (402)
Q Consensus        99 ~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  175 (402)
                        .++.+ |..|..+. +|++|++++|++..+|.. .....++..+++.+++.+..++...+..+. .+++|++.++.+.
T Consensus        91 --~l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           91 --NLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             --TCCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             --cccccCchhhhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence              78887 56677788 999999999999887654 456678888999887888888876566664 6888999888775


Q ss_pred             ccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhh-hhhcccceeeEeccceeeeEeccccccccCCC
Q 045968          176 RFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSS-NKLKSCIRSLCLDGFELEELKIDYTEIVRKRR  254 (402)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~  254 (402)
                      ...                .......+|+.+.+..  ...+..++.. ....+          +|++|+++++..... |
T Consensus       168 ~i~----------------~~~f~~~~L~~l~l~~--~n~l~~i~~~~f~~l~----------~L~~LdLs~N~l~~l-p  218 (350)
T 4ay9_X          168 EIH----------------NSAFNGTQLDELNLSD--NNNLEELPNDVFHGAS----------GPVILDISRTRIHSL-P  218 (350)
T ss_dssp             EEC----------------TTSSTTEEEEEEECTT--CTTCCCCCTTTTTTEE----------CCSEEECTTSCCCCC-C
T ss_pred             CCC----------------hhhccccchhHHhhcc--CCcccCCCHHHhccCc----------ccchhhcCCCCcCcc-C
Confidence            321                1112233455555542  1222222211 12222          445555555544322 2


Q ss_pred             CccccccccEEecccccCcccCcccccCCCCCEEeecC
Q 045968          255 EPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDG  292 (402)
Q Consensus       255 ~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~  292 (402)
                      .. .+.+|++|.+.++..++.+|.+..+++|+.+++.+
T Consensus       219 ~~-~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          219 SY-GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             SS-SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             hh-hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            23 47777777777776777777777777777777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.60  E-value=6.3e-15  Score=135.52  Aligned_cols=169  Identities=26%  Similarity=0.250  Sum_probs=138.4

Q ss_pred             CcEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968           21 RNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~   98 (402)
                      ...+...+.++..+|... .++++.|++++|.+..++.  ...+++|++|++++| .+..++.  ...+++|++|++++|
T Consensus        12 l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHN   87 (290)
T ss_dssp             CCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSS
T ss_pred             ccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCC
Confidence            455666777788886432 3689999999999988753  488999999999998 7877776  478999999999999


Q ss_pred             CccccccccccccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968           99 GQGRLKLPVGMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus        99 ~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                        .++.+|..+..+. +|++|++++|.+..+|. .+..+++|++|++++ +.++.++..++..+++|++|++.+|.+...
T Consensus        88 --~l~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           88 --QLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             --CCSSCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             --cCCcCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCcc
Confidence              8999998888888 99999999999998875 488999999999999 688888887788999999999999988532


Q ss_pred             ccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968          178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS  212 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  212 (402)
                                     ....+..+++|+.|.++.+.
T Consensus       164 ---------------~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          164 ---------------PAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             ---------------CTTTTTTCTTCCEEECCSSC
T ss_pred             ---------------CHHHhcCcCCCCEEECCCCc
Confidence                           11234567777777776543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=5.2e-15  Score=128.09  Aligned_cols=150  Identities=15%  Similarity=0.201  Sum_probs=128.6

Q ss_pred             cCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccc-cccccccccccc
Q 045968           38 KGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-LPVGMSVLGSSL  116 (402)
Q Consensus        38 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~~L  116 (402)
                      ..+++++.|+++++.+..++....+++|++|++++| .+..++.  +..+++|++|++++|  .++. .+..++.+. +|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n--~l~~~~~~~l~~l~-~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGK--DVTSDKIPNLSGLT-SL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECT--TCBGGGSCCCTTCT-TC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECC--ccCcccChhhcCCC-CC
Confidence            556789999999999999888889999999999999 7777653  899999999999999  8875 577788888 99


Q ss_pred             cEEEecCCCCcc-ccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhH
Q 045968          117 ELLDISCTGITE-LPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQ  195 (402)
Q Consensus       117 ~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
                      ++|++++|.+.. .+..+..+++|++|++++|..++.++.  +.++++|++|++.+|.+..                 +.
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~  175 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YR  175 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CT
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hH
Confidence            999999999985 567799999999999999655888874  8999999999999998852                 22


Q ss_pred             hhhcCCCCceEEEEecC
Q 045968          196 ELLGLKYLEVLELSLGS  212 (402)
Q Consensus       196 ~l~~l~~L~~L~l~~~~  212 (402)
                      .+..+++|+.|.++++.
T Consensus       176 ~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             TGGGCSSCCEEEECBC-
T ss_pred             HhccCCCCCEEEeeCcc
Confidence            57788999999998654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=1.4e-15  Score=153.48  Aligned_cols=124  Identities=21%  Similarity=0.300  Sum_probs=54.1

Q ss_pred             CccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEE
Q 045968           40 WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELL  119 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L  119 (402)
                      +..|+.|++.++.+..++.+..+++|+.|++++| .+..+++  +..+++|++|++++|  .+..++ .+..+. +|++|
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N--~l~~l~-~l~~l~-~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDEN--KIKDLS-SLKDLK-KLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSS--CCCCCT-TSTTCT-TCCEE
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCC--CCCCCh-hhccCC-CCCEE
Confidence            3444444444444444444444444444444444 3333333  444444444444444  444433 233344 44444


Q ss_pred             EecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          120 DISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       120 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      ++++|.+..++ .+..+++|+.|+|++ +.++.++.  +..+++|++|++.+|.+
T Consensus       115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A          115 SLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG--GGSCTTCSEEECCSSCC
T ss_pred             EecCCCCCCCc-cccCCCccCEEECCC-CccCCchh--hcccCCCCEEECcCCcC
Confidence            44444444432 244444444444444 23333321  44444444444444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.58  E-value=2.9e-14  Score=131.21  Aligned_cols=178  Identities=22%  Similarity=0.243  Sum_probs=138.2

Q ss_pred             ccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccc
Q 045968           32 KEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSV  111 (402)
Q Consensus        32 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~  111 (402)
                      ..+.....+++++.|+++++.+..++....+++|++|++++| .+..+++  +..+++|++|++++|  .++.++. +..
T Consensus        37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n--~l~~~~~-l~~  110 (291)
T 1h6t_A           37 TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN--KVKDLSS-LKD  110 (291)
T ss_dssp             TSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS--CCCCGGG-GTT
T ss_pred             ccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC--cCCCChh-hcc
Confidence            333445567789999999999888888888999999999988 7777766  888999999999999  7887654 777


Q ss_pred             ccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcc
Q 045968          112 LGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGE  191 (402)
Q Consensus       112 l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  191 (402)
                      +. +|++|++++|.+..+ ..+..+++|+.|++++ +.++.++.  +..+++|++|++.+|.+..              .
T Consensus       111 l~-~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~~--------------~  171 (291)
T 1h6t_A          111 LK-KLKSLSLEHNGISDI-NGLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISD--------------I  171 (291)
T ss_dssp             CT-TCCEEECTTSCCCCC-GGGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCC--------------C
T ss_pred             CC-CCCEEECCCCcCCCC-hhhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCcccc--------------c
Confidence            77 999999999988887 4678889999999998 57777743  8889999999999888753              1


Q ss_pred             hhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeee
Q 045968          192 VLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEE  241 (402)
Q Consensus       192 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~  241 (402)
                         ..+..+++|+.|.++.+....++.+    ...++|+.|++++|.+..
T Consensus       172 ---~~l~~l~~L~~L~L~~N~i~~l~~l----~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          172 ---VPLAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ---GGGTTCTTCCEEECCSSCCCBCGGG----TTCTTCSEEEEEEEEEEC
T ss_pred             ---hhhcCCCccCEEECCCCcCCCChhh----ccCCCCCEEECcCCcccC
Confidence               1277788899999988877776432    334566666666665443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.58  E-value=1.3e-14  Score=130.49  Aligned_cols=149  Identities=19%  Similarity=0.225  Sum_probs=122.1

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~  120 (402)
                      ..+.++++++.++.+|.... ++++.|++++| .+..+++..|.++++|++|++++|  .++.++ ..+..+. +|++|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~-~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN--QLQTLSAGVFDDLT-ELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCT-TCCEEE
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC--cCCccCHhHhccCC-cCCEEE
Confidence            56789999999998886533 78999999998 788877766999999999999999  888774 5578888 999999


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      +++|.+..++.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...               ....+..
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~  153 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSI---------------PAGAFDK  153 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTT
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCcc---------------CHHHcCc
Confidence            999999988755 68899999999999 688888887678999999999999987532               1223556


Q ss_pred             CCCCceEEEEec
Q 045968          200 LKYLEVLELSLG  211 (402)
Q Consensus       200 l~~L~~L~l~~~  211 (402)
                      +++|+.|+++.+
T Consensus       154 l~~L~~L~L~~N  165 (251)
T 3m19_A          154 LTNLQTLSLSTN  165 (251)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CcCCCEEECCCC
Confidence            677777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.57  E-value=1.2e-14  Score=138.08  Aligned_cols=62  Identities=10%  Similarity=0.051  Sum_probs=35.0

Q ss_pred             ccccEEecccccCcccCc------ccccCCCCCEEeecCCc---chHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          260 RNLHRVTMVLCHKLKDVT------FLVFAPNLKSLDLDGCD---AMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       260 ~~L~~L~l~~~~~l~~l~------~~~~l~~L~~L~l~~c~---~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                      ++|+.|++++| .+++.+      .+..+++|++|++++|.   .-.....        .....+..+++|+.|+++++.
T Consensus       225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~--------~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK--------ALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH--------HHHTTSTTCCEEEEECTTSCB
T ss_pred             CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH--------HHHHHhccCCceEEEecCCCc
Confidence            46777777776 565542      23456777777777765   1110000        111245567777777777754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=8.9e-15  Score=135.85  Aligned_cols=155  Identities=17%  Similarity=0.122  Sum_probs=106.9

Q ss_pred             ccceEEEccCCcccc-----cCCCCCCCccceEeccccccccc-cchHHh-ccCCCCCEEEccCCCcccccc-c----cc
Q 045968           41 ENVRRLSLMQNQIET-----VSEVPTCPHLLTLFLDFNQELEM-IADGFF-QLMPSLKVLKMSNCGQGRLKL-P----VG  108 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~-~~l~~L~~L~l~~~~~~i~~l-~----~~  108 (402)
                      ..++.+.+.+..+..     +.....+++|++|++++| .+.. .+..++ ..+++|++|++++|  .+... +    ..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n--~i~~~~~~~~~~~  140 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV--SWATGRSWLAELQ  140 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC--CCSSTTSSHHHHH
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc--cccchhhhhHHHH
Confidence            457888888776543     122234577999999998 5554 444422 88999999999999  77753 2    23


Q ss_pred             cccccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccc--cchh-hhhCCCCCcEEEeeeecccccccCCCcc
Q 045968          109 MSVLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIR--IPRQ-LISKFSRLRVLRMFAIGYDRFHEAPEDS  184 (402)
Q Consensus       109 ~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~  184 (402)
                      +..+. +|++|++++|.+..++. .+..+++|++|++++|.....  ++.. .+..+++|++|++.+|.+...       
T Consensus       141 ~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------  212 (310)
T 4glp_A          141 QWLKP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-------  212 (310)
T ss_dssp             TTBCS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-------
T ss_pred             hhhcc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-------
Confidence            34566 99999999999987764 578999999999999543332  3221 146889999999999988521       


Q ss_pred             cccCCcchhhHh-hhcCCCCceEEEEecC
Q 045968          185 VLFGGGEVLIQE-LLGLKYLEVLELSLGS  212 (402)
Q Consensus       185 ~~~~~~~~~~~~-l~~l~~L~~L~l~~~~  212 (402)
                            ...... +..+++|+.|+++.+.
T Consensus       213 ------~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          213 ------TGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             ------HHHHHHHHHHTCCCSSEECTTSC
T ss_pred             ------HHHHHHHHhcCCCCCEEECCCCC
Confidence                  112222 3567778777777554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.56  E-value=2.2e-14  Score=129.93  Aligned_cols=156  Identities=19%  Similarity=0.202  Sum_probs=128.8

Q ss_pred             CccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccc
Q 045968           29 AGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVG  108 (402)
Q Consensus        29 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~  108 (402)
                      ..+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+..+++  +..+++|++|++++|  .++.++..
T Consensus        29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N--~l~~l~~~  103 (263)
T 1xeu_A           29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRN--RLKNLNGI  103 (263)
T ss_dssp             SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSS--CCSCCTTC
T ss_pred             CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCC--ccCCcCcc
Confidence            344555566778899999999999998887788999999999988 7888877  889999999999999  88887653


Q ss_pred             cccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccC
Q 045968          109 MSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFG  188 (402)
Q Consensus       109 ~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  188 (402)
                      ..  . +|++|++++|.+..++ .+..+++|+.|++++ +.++.++.  +..+++|++|++.+|.+..            
T Consensus       104 ~~--~-~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~~------------  164 (263)
T 1xeu_A          104 PS--A-CLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITN------------  164 (263)
T ss_dssp             CC--S-SCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCCB------------
T ss_pred             cc--C-cccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCcc------------
Confidence            33  5 9999999999998875 588999999999999 57888864  8899999999999988852            


Q ss_pred             CcchhhHhhhcCCCCceEEEEecCc
Q 045968          189 GGEVLIQELLGLKYLEVLELSLGSY  213 (402)
Q Consensus       189 ~~~~~~~~l~~l~~L~~L~l~~~~~  213 (402)
                        .   ..+..+++|+.|+++++..
T Consensus       165 --~---~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          165 --T---GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             --C---TTSTTCCCCCEEEEEEEEE
T ss_pred             --h---HHhccCCCCCEEeCCCCcc
Confidence              1   4577788888888886543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.55  E-value=2.5e-14  Score=144.37  Aligned_cols=118  Identities=16%  Similarity=0.219  Sum_probs=57.2

Q ss_pred             EEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCC
Q 045968           46 LSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTG  125 (402)
Q Consensus        46 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~  125 (402)
                      +.+..+.+.++.....+++|+.|.+++| .+..++.  +..+++|+.|++++|  .+..++. +..+. +|++|+|++|.
T Consensus        26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N--~l~~~~~-l~~l~-~L~~L~Ls~N~   98 (605)
T 1m9s_A           26 DNLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN--KLTDIKP-LTNLK-NLGWLFLDENK   98 (605)
T ss_dssp             HHTTCSCTTSEECHHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTS--CCCCCGG-GGGCT-TCCEEECCSSC
T ss_pred             HhccCCCcccccchhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCC--CCCCChh-hccCC-CCCEEECcCCC
Confidence            3333334443333344455555555544 4444432  455555555555555  4544433 44444 55555555555


Q ss_pred             CccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          126 ITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       126 l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      +..+| .+..+++|+.|++++ +.+..++.  +..+++|+.|++.+|.+
T Consensus        99 l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L~Ls~N~l  143 (605)
T 1m9s_A           99 IKDLS-SLKDLKKLKSLSLEH-NGISDING--LVHLPQLESLYLGNNKI  143 (605)
T ss_dssp             CCCCT-TSTTCTTCCEEECTT-SCCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred             CCCCh-hhccCCCCCEEEecC-CCCCCCcc--ccCCCccCEEECCCCcc
Confidence            55443 344555555555555 24444432  45555555555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=4.4e-14  Score=125.24  Aligned_cols=146  Identities=26%  Similarity=0.341  Sum_probs=101.8

Q ss_pred             EEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcc
Q 045968           24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG  101 (402)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  101 (402)
                      +...+..+..+|... ..+++.|++++|.+..++.  ...+++|++|++++| .+..++...|..+++|++|++++|  .
T Consensus        24 v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N--~   99 (229)
T 3e6j_A           24 VDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN--Q   99 (229)
T ss_dssp             EECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--C
T ss_pred             eEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC--c
Confidence            444555566665422 2677778887777777643  366777777777777 667777666777777888888777  7


Q ss_pred             cccccc-ccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          102 RLKLPV-GMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       102 i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      ++.++. .+..+. +|++|++++|.+..+|..+..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus       100 l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          100 LTVLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCccChhHhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            776643 355666 77788887777777777777777778887777 5677776655777777777777776653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.54  E-value=4.7e-14  Score=122.03  Aligned_cols=148  Identities=18%  Similarity=0.263  Sum_probs=126.2

Q ss_pred             cCcEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           20 KRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ....+...+..+..++.+..+++|+.|++++|.+..++....+++|++|++++| .+.......+..+++|++|++++| 
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n-  122 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS-  122 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSS-
T ss_pred             CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCC-
Confidence            356778888888888899999999999999999888888899999999999998 666533333899999999999999 


Q ss_pred             ccccc-cccccccccccccEEEecCCC-CccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          100 QGRLK-LPVGMSVLGSSLELLDISCTG-ITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       100 ~~i~~-l~~~~~~l~~~L~~L~L~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                       .++. .+..+..+. +|++|++++|. +..+| .+..+++|++|++++ +.++.++.  +..+++|++|++.++.+.
T Consensus       123 -~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          123 -AHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -BCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC---
T ss_pred             -ccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCcccC
Confidence             8885 467788888 99999999997 88887 789999999999999 57888873  899999999999998764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=6.1e-14  Score=130.19  Aligned_cols=203  Identities=12%  Similarity=0.008  Sum_probs=123.6

Q ss_pred             CCccceEeccccccccccc-hH--HhccCCCCCEEEccCCCcccccc-cccc--ccccccccEEEecCCCCccc-c----
Q 045968           62 CPHLLTLFLDFNQELEMIA-DG--FFQLMPSLKVLKMSNCGQGRLKL-PVGM--SVLGSSLELLDISCTGITEL-P----  130 (402)
Q Consensus        62 ~~~L~~L~l~~~~~l~~~~-~~--~~~~l~~L~~L~l~~~~~~i~~l-~~~~--~~l~~~L~~L~L~~~~l~~l-p----  130 (402)
                      ...++.+.+..+ .+.+.. ..  .+..+++|++|++++|  .+... |..+  ..+. +|++|++++|.+... +    
T Consensus        63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~  138 (310)
T 4glp_A           63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDL--KITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAE  138 (310)
T ss_dssp             SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESC--CCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHH
T ss_pred             hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCC--EeccchhhhhhhccCC-CCCEEEeecccccchhhhhHH
Confidence            344677777765 332211 11  1234577999999999  77744 6666  7777 999999999988742 2    


Q ss_pred             HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchh--hHhhhcCCCCceEEE
Q 045968          131 EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVL--IQELLGLKYLEVLEL  208 (402)
Q Consensus       131 ~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l  208 (402)
                      ..+..+++|++|++++ +.++.++...+.++++|++|++++|.+..             ....  ...+..+++|+.|.+
T Consensus       139 ~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~L~~L~L  204 (310)
T 4glp_A          139 LQQWLKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLDLSDNPGLG-------------ERGLMAALCPHKFPAIQNLAL  204 (310)
T ss_dssp             HHTTBCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEECCSCTTCH-------------HHHHHTTSCTTSSCCCCSCBC
T ss_pred             HHhhhccCCCEEEeeC-CCcchhhHHHhccCCCCCEEECCCCCCcc-------------chhhhHHHhhhcCCCCCEEEC
Confidence            2356789999999999 57777776568899999999999998642             1111  112357888999999


Q ss_pred             EecCchhhHhhhhh-hhhcccceeeEeccceeeeEeccccccccCCCC-ccc---cccccEEecccccCcccCcccccCC
Q 045968          209 SLGSYHALQILLSS-NKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE-PFV---FRNLHRVTMVLCHKLKDVTFLVFAP  283 (402)
Q Consensus       209 ~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~-~~~---~~~L~~L~l~~~~~l~~l~~~~~l~  283 (402)
                      +.+....+...... ......|          ++|+++++......|. ...   +++|++|++++| .++.++... ++
T Consensus       205 s~N~l~~l~~~~~~l~~~l~~L----------~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~  272 (310)
T 4glp_A          205 RNTGMETPTGVCAALAAAGVQP----------HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PA  272 (310)
T ss_dssp             CSSCCCCHHHHHHHHHHHTCCC----------SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CS
T ss_pred             CCCCCCchHHHHHHHHhcCCCC----------CEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cC
Confidence            87766554443222 1222333          3333333333222111 002   256666666666 555554211 25


Q ss_pred             CCCEEeecCCc
Q 045968          284 NLKSLDLDGCD  294 (402)
Q Consensus       284 ~L~~L~l~~c~  294 (402)
                      +|++|++++|.
T Consensus       273 ~L~~L~Ls~N~  283 (310)
T 4glp_A          273 KLRVLDLSSNR  283 (310)
T ss_dssp             CCSCEECCSCC
T ss_pred             CCCEEECCCCc
Confidence            66666666653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=7.8e-14  Score=122.86  Aligned_cols=124  Identities=20%  Similarity=0.269  Sum_probs=60.4

Q ss_pred             EEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecC
Q 045968           45 RLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISC  123 (402)
Q Consensus        45 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~  123 (402)
                      .++..++.++.+|.... ++++.|++++| .+..++...|..+++|++|++++|  .++.+ |..|..+. +|++|++++
T Consensus        15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N--~i~~~~~~~~~~l~-~L~~L~Ls~   89 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP-ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN--QISELAPDAFQGLR-SLNSLVLYG   89 (220)
T ss_dssp             EEECTTSCCSSCCSSCC-TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS--CCCEECTTTTTTCS-SCCEEECCS
T ss_pred             EEEcCCCCcCcCCCccC-cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC--cCCCcCHHHhhCCc-CCCEEECCC
Confidence            34444444444443211 44555555544 444444433555555555555555  44444 34444444 555555555


Q ss_pred             CCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          124 TGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       124 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      |.+..+|.. +..+++|+.|++++ +.++.++...+..+++|++|++.+|.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            555555443 34455555555555 344444333355555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=1.5e-13  Score=121.01  Aligned_cols=148  Identities=25%  Similarity=0.290  Sum_probs=126.3

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+.++..+|... ..+++.|++++|.+..++.  ...+++|+.|++++| .+..+.+..|.++++|++|++++| 
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-
Confidence            45666777788887533 2689999999999999875  478999999999999 788876666999999999999999 


Q ss_pred             ccccccccc-cccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          100 QGRLKLPVG-MSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       100 ~~i~~l~~~-~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                       .++.+|.. |..+. +|++|++++|.+..++ ..+..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus        91 -~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 -KITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             -CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             -cCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence             89988654 57788 9999999999999875 4588999999999999 6888888766899999999999988764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.50  E-value=2.9e-14  Score=135.40  Aligned_cols=250  Identities=14%  Similarity=0.081  Sum_probs=147.0

Q ss_pred             EEccCCcccc-cCCC-CCCCccceEeccccccccccch----HHhccCC-CCCEEEccCCCcccccc-ccccccc-----
Q 045968           46 LSLMQNQIET-VSEV-PTCPHLLTLFLDFNQELEMIAD----GFFQLMP-SLKVLKMSNCGQGRLKL-PVGMSVL-----  112 (402)
Q Consensus        46 L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~l~~~~~----~~~~~l~-~L~~L~l~~~~~~i~~l-~~~~~~l-----  112 (402)
                      +.++.+.+.. ++.. ...++|++|++++| .+.+.+.    ..+..++ +|++|++++|  .+... +..+..+     
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN--SLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS--CGGGSCHHHHHHHHHTSC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC--CCCHHHHHHHHHHHhccC
Confidence            3455555553 2333 33445888888877 6666664    5567777 7888888888  67654 4444443     


Q ss_pred             cccccEEEecCCCCccccHh-----hhcC-CCCcEEEccCCCCccccchhhhh----C-CCCCcEEEeeeecccccccCC
Q 045968          113 GSSLELLDISCTGITELPEE-----LKKL-VNLKCLNLRWTGALIRIPRQLIS----K-FSRLRVLRMFAIGYDRFHEAP  181 (402)
Q Consensus       113 ~~~L~~L~L~~~~l~~lp~~-----i~~l-~~L~~L~l~~~~~~~~~~~~~l~----~-l~~L~~L~l~~~~~~~~~~~~  181 (402)
                      . +|++|++++|.+...+..     +..+ ++|++|++++ +.++..+...+.    . .++|++|++.+|.+...    
T Consensus        80 ~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----  153 (362)
T 3goz_A           80 A-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK----  153 (362)
T ss_dssp             T-TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS----
T ss_pred             C-CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH----
Confidence            4 788888888877654332     4444 6788888887 456665543332    3 35788888877766421    


Q ss_pred             CcccccCCcc-hhhHhhhcCC-CCceEEEEecCchhhH--hhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcc
Q 045968          182 EDSVLFGGGE-VLIQELLGLK-YLEVLELSLGSYHALQ--ILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPF  257 (402)
Q Consensus       182 ~~~~~~~~~~-~~~~~l~~l~-~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~  257 (402)
                              .. .....+..++ +|+.|+++++......  .+....                                . 
T Consensus       154 --------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--------------------------------~-  192 (362)
T 3goz_A          154 --------SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL--------------------------------A-  192 (362)
T ss_dssp             --------CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------H-
T ss_pred             --------HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------H-
Confidence                    11 1222334443 5655555543322110  000000                                1 


Q ss_pred             cc-ccccEEecccccCccc-----Cc-cccc-CCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcc
Q 045968          258 VF-RNLHRVTMVLCHKLKD-----VT-FLVF-APNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL  329 (402)
Q Consensus       258 ~~-~~L~~L~l~~~~~l~~-----l~-~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  329 (402)
                      .+ ++|+.|++++| .+++     ++ .+.. .++|++|++++|.. .+....       ........+++|+.|++++|
T Consensus       193 ~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~-------~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          193 SIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLE-------NLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             TSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCHH-------HHHHTTTTTTTCSEEEEEHH
T ss_pred             hCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHHH-------HHHHHHhcCCCccEEEeccC
Confidence            23 58889999888 6766     32 3444 46999999999754 221100       11135577899999999987


Q ss_pred             c-------cccccccCccCCCCccEEEecCCC
Q 045968          330 P-------NLESIYWKPLPFTRLKEMAVLGCD  354 (402)
Q Consensus       330 ~-------~l~~i~~~~~~~~~L~~L~i~~c~  354 (402)
                      .       .+..+......+++|+.|++++.+
T Consensus       264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            5       133444444457888888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.48  E-value=3.4e-13  Score=117.50  Aligned_cols=146  Identities=22%  Similarity=0.318  Sum_probs=107.3

Q ss_pred             EEEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      .+.....++..+|... .++++.|++++|.+..++..  ..+++|++|++++| .+..++...|..+++|++|++++|  
T Consensus        11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n--   86 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN--   86 (208)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--
T ss_pred             EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC--
Confidence            3444555666665322 35788888888888776653  57888888888877 777777766788888888888888  


Q ss_pred             ccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          101 GRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       101 ~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      .++.++. .+..+. +|++|++++|.+..++.. +..+++|++|++++ +.++.++...+..+++|++|++.+|.+
T Consensus        87 ~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           87 QLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             cCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe
Confidence            7777754 356677 888888888888877665 57788888888888 567777765577788888888887765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.48  E-value=2.3e-13  Score=119.80  Aligned_cols=145  Identities=16%  Similarity=0.208  Sum_probs=76.2

Q ss_pred             EEEeCCccccCCCccCCccceEEEccCCcccccCC---CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE---VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      +......+..+|..- ...++.|++++|.+..++.   ...+++|++|++++| .+..+++..|..+++|++|++++|  
T Consensus        16 l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N--   91 (220)
T 2v70_A           16 VDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN--   91 (220)
T ss_dssp             EECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS--
T ss_pred             eEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC--
Confidence            334444444444311 2345556666665555422   245556666666655 455555444555666666666666  


Q ss_pred             cccccc-cccccccccccEEEecCCCCccc-cHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          101 GRLKLP-VGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       101 ~i~~l~-~~~~~l~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      .++.++ ..|..+. +|++|++++|.+..+ |..+..+++|+.|++++ +.++.++...+..+++|++|++.+|.+
T Consensus        92 ~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           92 RLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             ccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            555543 2344555 666666666655554 33355555666666655 355554333355556666666555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=2e-13  Score=129.50  Aligned_cols=170  Identities=24%  Similarity=0.300  Sum_probs=132.3

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCCC--C-CCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--P-TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~   98 (402)
                      ..+...+..+..+|... ...++.|++++|.+..++..  . .+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC
Confidence            45666777788887532 35789999999999887654  3 8899999999988 888888777899999999999999


Q ss_pred             Cccccccc-cccccccccccEEEecCCCCcccc-HhhhcCCCCcEEEccCCCCccccchhhh---hCCCCCcEEEeeeec
Q 045968           99 GQGRLKLP-VGMSVLGSSLELLDISCTGITELP-EELKKLVNLKCLNLRWTGALIRIPRQLI---SKFSRLRVLRMFAIG  173 (402)
Q Consensus        99 ~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~  173 (402)
                        .++.++ ..|..+. +|++|++++|.+..++ ..+..+++|+.|++++ +.++.+|...+   ..+++|++|++.+|.
T Consensus        99 --~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           99 --HLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             --CCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             --cCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence              888875 4577787 9999999999998774 4588899999999999 68888887655   568999999999988


Q ss_pred             ccccccCCCcccccCCcchhhHhhhcCCC--CceEEEEecC
Q 045968          174 YDRFHEAPEDSVLFGGGEVLIQELLGLKY--LEVLELSLGS  212 (402)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~  212 (402)
                      +...               ....+..++.  ++.|.+.++.
T Consensus       175 l~~l---------------~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          175 LKKL---------------PLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCCC---------------CHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcc---------------CHHHhhhccHhhcceEEecCCC
Confidence            8532               2334555555  3677777544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.47  E-value=1.7e-14  Score=130.79  Aligned_cols=145  Identities=21%  Similarity=0.189  Sum_probs=108.3

Q ss_pred             CCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968           39 GWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL  118 (402)
Q Consensus        39 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~  118 (402)
                      .+.++..+++.++.+++++....+++|++|++++| .+..++.  +..+++|++|++++|  .++.++. +..+. +|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N--~i~~~~~-l~~l~-~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHN--QISDLSP-LKDLT-KLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSS--CCCCCGG-GTTCS-SCCE
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCC--ccCCChh-hccCC-CCCE
Confidence            44566677788888877776677888888888887 7777763  788888888888888  7887765 77777 8888


Q ss_pred             EEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhh
Q 045968          119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELL  198 (402)
Q Consensus       119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (402)
                      |++++|.+..+|....  ++|+.|++++ +.++.++.  +.++++|++|++.+|.+..                 +..+.
T Consensus        90 L~L~~N~l~~l~~~~~--~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-----------------~~~l~  147 (263)
T 1xeu_A           90 LSVNRNRLKNLNGIPS--ACLSRLFLDN-NELRDTDS--LIHLKNLEILSIRNNKLKS-----------------IVMLG  147 (263)
T ss_dssp             EECCSSCCSCCTTCCC--SSCCEEECCS-SCCSBSGG--GTTCTTCCEEECTTSCCCB-----------------CGGGG
T ss_pred             EECCCCccCCcCcccc--CcccEEEccC-CccCCChh--hcCcccccEEECCCCcCCC-----------------ChHHc
Confidence            8888888887765333  8888888888 47777764  7888888888888887742                 12456


Q ss_pred             cCCCCceEEEEecC
Q 045968          199 GLKYLEVLELSLGS  212 (402)
Q Consensus       199 ~l~~L~~L~l~~~~  212 (402)
                      .+++|+.|+++++.
T Consensus       148 ~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          148 FLSKLEVLDLHGNE  161 (263)
T ss_dssp             GCTTCCEEECTTSC
T ss_pred             cCCCCCEEECCCCc
Confidence            66777777766543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.45  E-value=3.8e-13  Score=119.15  Aligned_cols=150  Identities=22%  Similarity=0.253  Sum_probs=125.3

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~  120 (402)
                      ..+.++.+++.+..+|... .++|++|++++| .+..+++..|..+++|++|++++|  .+..++. .|..+. +|++|+
T Consensus        20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~~~l~-~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSN--QLGALPVGVFDSLT-QLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCT-TCCEEE
T ss_pred             eCCEeEccCCCcCccCCCC-CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCC--CCCCcChhhcccCC-CcCEEE
Confidence            4567889998888888643 389999999998 788876666999999999999999  8988864 467788 999999


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      +++|.+..++.. +..+++|++|++++ +.++.+|.. +..+++|++|++.+|.+...               ....+..
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~  157 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSI---------------PHGAFDR  157 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCC---------------CTTTTTT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCcc---------------CHHHHhC
Confidence            999999988776 68899999999999 688899876 89999999999999988532               2234677


Q ss_pred             CCCCceEEEEecCc
Q 045968          200 LKYLEVLELSLGSY  213 (402)
Q Consensus       200 l~~L~~L~l~~~~~  213 (402)
                      +++|+.|.+.++..
T Consensus       158 l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          158 LSSLTHAYLFGNPW  171 (229)
T ss_dssp             CTTCCEEECTTSCB
T ss_pred             CCCCCEEEeeCCCc
Confidence            88899999886543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.45  E-value=4.2e-13  Score=118.11  Aligned_cols=150  Identities=17%  Similarity=0.245  Sum_probs=123.5

Q ss_pred             ceEEEccCCcccccCCCCCCCccceEecccccccccc-chHHhccCCCCCEEEccCCCccccccc-cccccccccccEEE
Q 045968           43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMI-ADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLD  120 (402)
Q Consensus        43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~  120 (402)
                      -+.++++++.++.+|.. -.+.+++|++++| .+..+ +...|..+++|++|++++|  .++.++ ..|..+. +|++|+
T Consensus        13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~~~l~-~L~~L~   87 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN--KITDIEEGAFEGAS-GVNEIL   87 (220)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS--CCCEECTTTTTTCT-TCCEEE
T ss_pred             CCEeEeCCCCcccCccC-CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC--cCCEECHHHhCCCC-CCCEEE
Confidence            35799999999988764 2456789999998 77776 4455899999999999999  899885 4788888 999999


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      +++|.+..++.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...               ....+..
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~  151 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTV---------------APGAFDT  151 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCB---------------CTTTTTT
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEE---------------CHHHhcC
Confidence            999999988765 88999999999999 688887655689999999999999988532               2345667


Q ss_pred             CCCCceEEEEecCc
Q 045968          200 LKYLEVLELSLGSY  213 (402)
Q Consensus       200 l~~L~~L~l~~~~~  213 (402)
                      +++|+.|+++++..
T Consensus       152 l~~L~~L~L~~N~l  165 (220)
T 2v70_A          152 LHSLSTLNLLANPF  165 (220)
T ss_dssp             CTTCCEEECCSCCE
T ss_pred             CCCCCEEEecCcCC
Confidence            88899999886654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=2.6e-13  Score=115.08  Aligned_cols=134  Identities=21%  Similarity=0.273  Sum_probs=107.1

Q ss_pred             CCccCCccceEEEccCCcccccCCCCCCC-ccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccc-ccc
Q 045968           35 PDVKGWENVRRLSLMQNQIETVSEVPTCP-HLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGM-SVL  112 (402)
Q Consensus        35 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~-~~l  112 (402)
                      +.+..+.+++.|++++|.+..++....+. +|++|++++| .+..++ . +..+++|++|++++|  .++.+|..+ ..+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~-~-l~~l~~L~~L~Ls~N--~l~~~~~~~~~~l   87 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-G-FPLLRRLKTLLVNNN--RICRIGEGLDQAL   87 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-C-CCCCSSCCEEECCSS--CCCEECSCHHHHC
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCccc-c-cccCCCCCEEECCCC--cccccCcchhhcC
Confidence            44455678999999999888887665544 9999999988 777763 2 888999999999999  888886554 777


Q ss_pred             cccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccchh---hhhCCCCCcEEEeeeeccc
Q 045968          113 GSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPRQ---LISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       113 ~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~  175 (402)
                      + +|++|++++|.+..+|.  .+..+++|+.|++++ +.+..+|..   .+..+++|++|++..+...
T Consensus        88 ~-~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 P-DLTELILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             T-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             C-CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7 99999999999988887  688889999999998 567777653   4778889999988887664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.43  E-value=3.8e-13  Score=113.03  Aligned_cols=129  Identities=22%  Similarity=0.226  Sum_probs=102.3

Q ss_pred             ccceEEEccCCccc--ccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccc-cccccccccccc
Q 045968           41 ENVRRLSLMQNQIE--TVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-LPVGMSVLGSSL  116 (402)
Q Consensus        41 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~~L  116 (402)
                      ++++.|++++|.+.  .++.. ..+++|++|++++| .+..+ . .+..+++|++|++++|  .+.. +|..+..+. +|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~-~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~-~L   97 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-S-NLPKLPKLKKLELSEN--RIFGGLDMLAEKLP-NL   97 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-S-SCCCCSSCCEEEEESC--CCCSCCCHHHHHCT-TC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-h-hhccCCCCCEEECcCC--cCchHHHHHHhhCC-CC
Confidence            67888999988887  67766 77888999999888 57766 3 3788888999999988  7776 566666677 89


Q ss_pred             cEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccch---hhhhCCCCCcEEEeeeecccc
Q 045968          117 ELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIPR---QLISKFSRLRVLRMFAIGYDR  176 (402)
Q Consensus       117 ~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~  176 (402)
                      ++|++++|.+..+|  ..+..+++|+.|++++ +.++.++.   ..+..+++|++|++.+|....
T Consensus        98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CEEECBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CEEeccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999998888876  5678888899999988 46777665   347888889998888887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=9.4e-13  Score=114.70  Aligned_cols=148  Identities=23%  Similarity=0.266  Sum_probs=119.7

Q ss_pred             ceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEEe
Q 045968           43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDI  121 (402)
Q Consensus        43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L  121 (402)
                      -+.++..++.+..+|.. ..++|++|++++| .+..++...+..+++|++|++++|  .++.++. .+..+. +|++|++
T Consensus         9 ~~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~-~L~~L~L   83 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTG-IPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN--KLQSLPNGVFNKLT-SLTYLNL   83 (208)
T ss_dssp             TTEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCT-TCCEEEC
T ss_pred             CCEEEecCCCccCCCCC-CCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC--ccCccChhhcCCCC-CcCEEEC
Confidence            35677888888877744 3568999999998 788888877899999999999999  8888865 457777 9999999


Q ss_pred             cCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968          122 SCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL  200 (402)
Q Consensus       122 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  200 (402)
                      ++|.+..++.. +..+++|++|++++ +.++.++...+.++++|++|++.+|.+...               ....+..+
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---------------~~~~~~~l  147 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSV---------------PDGVFDRL  147 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTC
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCcccee---------------CHHHhccC
Confidence            99999988765 68899999999999 688888876688999999999999887532               11235567


Q ss_pred             CCCceEEEEec
Q 045968          201 KYLEVLELSLG  211 (402)
Q Consensus       201 ~~L~~L~l~~~  211 (402)
                      ++|+.|+++++
T Consensus       148 ~~L~~L~l~~N  158 (208)
T 2o6s_A          148 TSLQYIWLHDN  158 (208)
T ss_dssp             TTCCEEECCSC
T ss_pred             CCccEEEecCC
Confidence            77777777644

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=3.9e-13  Score=110.62  Aligned_cols=123  Identities=24%  Similarity=0.233  Sum_probs=97.0

Q ss_pred             ccceEEEccCCccc--ccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccc-cccccccccccc
Q 045968           41 ENVRRLSLMQNQIE--TVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-LPVGMSVLGSSL  116 (402)
Q Consensus        41 ~~l~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~~L  116 (402)
                      ++++.|++++|.+.  .++.. ..+++|++|++++| .+..+  ..+..+++|++|++++|  .++. +|..+..+. +|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~-~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN--RVSGGLEVLAEKCP-NL   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS--CCCSCTHHHHHHCT-TC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC--cccchHHHHhhhCC-CC
Confidence            67888999988887  66655 77888999999888 67666  33788888999999888  7776 566666677 89


Q ss_pred             cEEEecCCCCcccc--HhhhcCCCCcEEEccCCCCccccch---hhhhCCCCCcEEEee
Q 045968          117 ELLDISCTGITELP--EELKKLVNLKCLNLRWTGALIRIPR---QLISKFSRLRVLRMF  170 (402)
Q Consensus       117 ~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~  170 (402)
                      ++|++++|.+..++  ..+..+++|++|++++ +.++.++.   ..+..+++|++|++.
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence            99999888888765  5688888889999888 46777665   457888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.41  E-value=6.2e-13  Score=126.13  Aligned_cols=156  Identities=22%  Similarity=0.215  Sum_probs=125.0

Q ss_pred             ceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhc-cCCCCCEEEccCCCccccccc-cccccccccccEEE
Q 045968           43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQ-LMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLD  120 (402)
Q Consensus        43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~  120 (402)
                      -+.+++.++.++.+|.. -.+.++.|++++| .+..++...+. .+++|++|++++|  .++.++ ..|..+. +|++|+
T Consensus        20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~~~l~-~L~~L~   94 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN--HLNFISSEAFVPVP-NLRYLD   94 (361)
T ss_dssp             TTEEECCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS--CCCEECTTTTTTCT-TCCEEE
T ss_pred             CCEEEeCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC--cCCccChhhccCCC-CCCEEE
Confidence            35789999999888764 2356899999998 88888877677 9999999999999  899885 5688888 999999


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      +++|.+..++.. +..+++|+.|++++ +.++.++...+.++++|++|++.+|.+...            ....+..+..
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l------------~~~~~~~~~~  161 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRF------------PVELIKDGNK  161 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSC------------CGGGTC----
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCee------------CHHHhcCccc
Confidence            999999988764 78999999999999 688888666699999999999999988643            2222223367


Q ss_pred             CCCCceEEEEecCchhh
Q 045968          200 LKYLEVLELSLGSYHAL  216 (402)
Q Consensus       200 l~~L~~L~l~~~~~~~~  216 (402)
                      +++|+.|+++.+....+
T Consensus       162 l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          162 LPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CTTCCEEECCSSCCCCC
T ss_pred             CCcCCEEECCCCCCCcc
Confidence            88999999987765543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.38  E-value=3.4e-12  Score=127.56  Aligned_cols=183  Identities=21%  Similarity=0.198  Sum_probs=115.6

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI  121 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L  121 (402)
                      +++.|++++|.+..+|... +++|++|++++| .+..+|    ..+++|++|++++|  .++.+|. +..   +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N--~l~~ip~-l~~---~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQN-ALISLP----ELPASLEYLDACDN--RLSTLPE-LPA---SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSS--CCSCCCC-CCT---TCCEEEC
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCC-CCcccc----cccCCCCEEEccCC--CCCCcch-hhc---CCCEEEC
Confidence            6777777777777766532 367777777777 666666    34677777777777  6777666 443   7777777


Q ss_pred             cCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCC
Q 045968          122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLK  201 (402)
Q Consensus       122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  201 (402)
                      ++|.+..+|.   .+++|+.|++++ +.++.+|.    .+++|++|++.+|.+...                 ..+.  +
T Consensus       128 s~N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~L~~l-----------------p~l~--~  180 (571)
T 3cvr_A          128 DNNQLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRNNQLTFL-----------------PELP--E  180 (571)
T ss_dssp             CSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSCC-----------------CCCC--T
T ss_pred             CCCcCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCCCCCCCc-----------------chhh--C
Confidence            7777777766   567777777777 46666664    466777777777766421                 0011  4


Q ss_pred             CCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc----cccccccEEecccccCcccCc
Q 045968          202 YLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP----FVFRNLHRVTMVLCHKLKDVT  277 (402)
Q Consensus       202 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~l~  277 (402)
                      +|+.|+++.+.                          |+          ..+...    ...+.|+.|++++| .++.+|
T Consensus       181 ~L~~L~Ls~N~--------------------------L~----------~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp  223 (571)
T 3cvr_A          181 SLEALDVSTNL--------------------------LE----------SLPAVPVRNHHSEETEIFFRCREN-RITHIP  223 (571)
T ss_dssp             TCCEEECCSSC--------------------------CS----------SCCCCC--------CCEEEECCSS-CCCCCC
T ss_pred             CCCEEECcCCC--------------------------CC----------chhhHHHhhhcccccceEEecCCC-cceecC
Confidence            44444444332                          22          111100    02233488888887 777776


Q ss_pred             -ccccCCCCCEEeecCCcchHHHh
Q 045968          278 -FLVFAPNLKSLDLDGCDAMEEII  300 (402)
Q Consensus       278 -~~~~l~~L~~L~l~~c~~l~~~~  300 (402)
                       .+..+++|+.|++++|+.-..++
T Consensus       224 ~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          224 ENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             GGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             HHHhcCCCCCEEEeeCCcCCCcCH
Confidence             46678889999999887655544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.38  E-value=1.9e-12  Score=129.42  Aligned_cols=180  Identities=17%  Similarity=0.180  Sum_probs=107.0

Q ss_pred             CCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEE
Q 045968           89 SLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLR  168 (402)
Q Consensus        89 ~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  168 (402)
                      +|++|++++|  .++.+|..+.  . +|++|++++|.+..+|   ..+++|++|++++ +.++.+|.  +.+  +|++|+
T Consensus        60 ~L~~L~Ls~n--~L~~lp~~l~--~-~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~--l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRL--NLSSLPDNLP--P-QITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE--LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSS--CCSCCCSCCC--T-TCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC--CCT--TCCEEE
T ss_pred             CccEEEeCCC--CCCccCHhHc--C-CCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch--hhc--CCCEEE
Confidence            6666666666  5666655442  3 6666666666666666   3456666666666 35555554  333  666666


Q ss_pred             eeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccc
Q 045968          169 MFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTE  248 (402)
Q Consensus       169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~  248 (402)
                      +.+|.+...                 ..  .+++|+.|+++++....++.      ..+          +|++|+++++.
T Consensus       127 Ls~N~l~~l-----------------p~--~l~~L~~L~Ls~N~l~~lp~------~l~----------~L~~L~Ls~N~  171 (571)
T 3cvr_A          127 VDNNQLTML-----------------PE--LPALLEYINADNNQLTMLPE------LPT----------SLEVLSVRNNQ  171 (571)
T ss_dssp             CCSSCCSCC-----------------CC--CCTTCCEEECCSSCCSCCCC------CCT----------TCCEEECCSSC
T ss_pred             CCCCcCCCC-----------------CC--cCccccEEeCCCCccCcCCC------cCC----------CcCEEECCCCC
Confidence            666655321                 11  35566666666554333221      122          34444444444


Q ss_pred             cccCCCCccccccccEEecccccCcccCcccccCCCC-------CEEeecCCcchHHHhhcCCCCCCccccCCCCCCCcc
Q 045968          249 IVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNL-------KSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENL  321 (402)
Q Consensus       249 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L-------~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L  321 (402)
                      ....+. - . ++|+.|++++| .++.++.+..  +|       +.|++++|. ++.++            ..+..+++|
T Consensus       172 L~~lp~-l-~-~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~-l~~lp------------~~l~~l~~L  232 (571)
T 3cvr_A          172 LTFLPE-L-P-ESLEALDVSTN-LLESLPAVPV--RNHHSEETEIFFRCRENR-ITHIP------------ENILSLDPT  232 (571)
T ss_dssp             CSCCCC-C-C-TTCCEEECCSS-CCSSCCCCC----------CCEEEECCSSC-CCCCC------------GGGGGSCTT
T ss_pred             CCCcch-h-h-CCCCEEECcCC-CCCchhhHHH--hhhcccccceEEecCCCc-ceecC------------HHHhcCCCC
Confidence            433222 2 3 89999999998 7888876332  67       999999975 44443            245569999


Q ss_pred             ceeecCcccccccc
Q 045968          322 QRLNLEDLPNLESI  335 (402)
Q Consensus       322 ~~L~l~~c~~l~~i  335 (402)
                      +.|++++++--..+
T Consensus       233 ~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          233 CTIILEDNPLSSRI  246 (571)
T ss_dssp             EEEECCSSSCCHHH
T ss_pred             CEEEeeCCcCCCcC
Confidence            99999997643333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.33  E-value=7.7e-12  Score=107.66  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=102.3

Q ss_pred             eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccccccEEEec
Q 045968           44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLDIS  122 (402)
Q Consensus        44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~L~  122 (402)
                      +.++++++.+..+|.. -.++|++|++++| .+..+|.. |..+++|++|++++|  .++.++ ..|..+. +|++|+++
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N--~i~~i~~~~f~~l~-~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNN--RISTLSNQSFSNMT-QLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSS--CCCCCCTTTTTTCT-TCCEEECC
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCC--cCCEeCHhHccCCC-CCCEEECC
Confidence            4688888888888754 2368899999988 77788754 889999999999999  888874 5678888 99999999


Q ss_pred             CCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          123 CTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       123 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      +|.+..++. .+..+++|+.|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999988765 478889999999998 6888888766888999999998887663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=3.6e-12  Score=107.99  Aligned_cols=124  Identities=20%  Similarity=0.250  Sum_probs=109.6

Q ss_pred             cCcEEEEeCCccccCCCccCCc-cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968           20 KRNFLVRAGAGLKEAPDVKGWE-NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~   98 (402)
                      +...+...+..+..++.+..+. +|+.|++++|.+..++....+++|++|++++| .+..+++..+..+++|++|++++|
T Consensus        20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N   98 (176)
T 1a9n_A           20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN   98 (176)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC
T ss_pred             CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC
Confidence            3467777787888888777776 99999999999999877799999999999999 888888776799999999999999


Q ss_pred             Ccccccccc--ccccccccccEEEecCCCCccccHh----hhcCCCCcEEEccCC
Q 045968           99 GQGRLKLPV--GMSVLGSSLELLDISCTGITELPEE----LKKLVNLKCLNLRWT  147 (402)
Q Consensus        99 ~~~i~~l~~--~~~~l~~~L~~L~L~~~~l~~lp~~----i~~l~~L~~L~l~~~  147 (402)
                        .+..+|.  .+..+. +|++|++++|.+..+|..    +..+++|+.|+++.+
T Consensus        99 --~i~~~~~~~~l~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           99 --SLVELGDLDPLASLK-SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             --CCCCGGGGGGGGGCT-TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             --cCCcchhhHhhhcCC-CCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence              8888876  778888 999999999999988875    889999999999985

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.32  E-value=1.5e-11  Score=103.12  Aligned_cols=134  Identities=22%  Similarity=0.198  Sum_probs=112.2

Q ss_pred             ccccCcEEEEeCCccc--cCCCc-cCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEE
Q 045968           17 EKEKRNFLVRAGAGLK--EAPDV-KGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVL   93 (402)
Q Consensus        17 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L   93 (402)
                      .+.....+......+.  .+|.. ..+++|+.|++++|.+..++....+++|++|++++| .+....+..+..+++|++|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence            3455677888887777  67664 788999999999999998866789999999999999 6776344447889999999


Q ss_pred             EccCCCccccccc--cccccccccccEEEecCCCCccccH----hhhcCCCCcEEEccCCCCccccch
Q 045968           94 KMSNCGQGRLKLP--VGMSVLGSSLELLDISCTGITELPE----ELKKLVNLKCLNLRWTGALIRIPR  155 (402)
Q Consensus        94 ~l~~~~~~i~~l~--~~~~~l~~~L~~L~L~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~~~  155 (402)
                      ++++|  .++.++  ..+..+. +|++|++++|.+..+|.    .+..+++|+.|++.+| ....+|.
T Consensus       101 ~Ls~N--~l~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A          101 NLSGN--KLKDISTLEPLKKLE-CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             ECBSS--SCCSSGGGGGGSSCS-CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             eccCC--ccCcchhHHHHhcCC-CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            99999  898875  6788888 99999999999998876    6889999999999995 6666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=1e-11  Score=105.16  Aligned_cols=127  Identities=21%  Similarity=0.304  Sum_probs=104.8

Q ss_pred             ceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEEe
Q 045968           43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDI  121 (402)
Q Consensus        43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L  121 (402)
                      .+.+++.++.+..+|.. ..++|++|++++| .+..++...+..+++|++|++++|  .++.++. .+..+. +|++|++
T Consensus         9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~-~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN--QIQSLPDGVFDKLT-KLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCSSCCTT-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCT-TCCEEEC
T ss_pred             CCEEEecCCCCccCCCC-CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC--cceEeChhHccCCC-ccCEEEC
Confidence            46788888888877743 3478999999988 777888776889999999999999  8888754 457777 9999999


Q ss_pred             cCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          122 SCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       122 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      ++|.+..+|.. +..+++|++|++++ +.++.+|...+..+++|++|++.+|.+.
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCee
Confidence            99999888765 67889999999998 5788888776788999999999988774

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.29  E-value=8.7e-12  Score=107.19  Aligned_cols=127  Identities=18%  Similarity=0.225  Sum_probs=101.1

Q ss_pred             ceEEEccCCcccccCCCCCCCccceEeccccccccccchH-HhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968           43 VRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADG-FFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD  120 (402)
Q Consensus        43 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~  120 (402)
                      .+.++++++.+..+|... .+++++|++++| .+..++.. .|..+++|++|++++|  .++.+ |..|..+. +|++|+
T Consensus        10 ~~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~-~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAFEGAS-HIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS--CCCCBCTTTTTTCT-TCCEEE
T ss_pred             CCEEEcCCCCcCcCccCC-CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC--CCCCcCHhHcCCcc-cCCEEE
Confidence            367888888888887642 238889999988 77776653 4788999999999999  88877 67788888 999999


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      +++|.+..++.. +..+++|++|++++ +.++.++...+..+++|++|++.+|.+.
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999988877654 77889999999998 5777765445888999999999888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.27  E-value=4.1e-11  Score=98.37  Aligned_cols=125  Identities=20%  Similarity=0.183  Sum_probs=104.8

Q ss_pred             cccCcEEEEeCCccc--cCCC-ccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEE
Q 045968           18 KEKRNFLVRAGAGLK--EAPD-VKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLK   94 (402)
Q Consensus        18 ~~~~~~~~~~~~~~~--~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~   94 (402)
                      +.+...+...+..+.  .+|. +..+++++.|++++|.+..++....+++|++|++++| .+....+..+..+++|++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEE
Confidence            445677888887777  6665 4788999999999999998866789999999999999 77763344488899999999


Q ss_pred             ccCCCccccccc--cccccccccccEEEecCCCCccccH----hhhcCCCCcEEEccC
Q 045968           95 MSNCGQGRLKLP--VGMSVLGSSLELLDISCTGITELPE----ELKKLVNLKCLNLRW  146 (402)
Q Consensus        95 l~~~~~~i~~l~--~~~~~l~~~L~~L~L~~~~l~~lp~----~i~~l~~L~~L~l~~  146 (402)
                      +++|  .++.++  ..++.++ +|++|++++|.+..+|.    .+..+++|+.|++++
T Consensus        95 ls~N--~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGN--KIKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTS--CCCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCC--cCCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999  888764  7788888 99999999999988876    588999999998863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.23  E-value=1.3e-11  Score=115.52  Aligned_cols=219  Identities=14%  Similarity=0.094  Sum_probs=108.2

Q ss_pred             ccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCc
Q 045968          112 LGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGG  190 (402)
Q Consensus       112 l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  190 (402)
                      +. +|+.|++.. .+..++.. +..+++|+.+++.. +.+..++..++.++.++..+...........           .
T Consensus       100 ~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-----------~  165 (329)
T 3sb4_A          100 KQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFK-----------N  165 (329)
T ss_dssp             CT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTS-----------T
T ss_pred             cC-CCcEEECCc-cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhcc-----------c
Confidence            66 888888887 77777664 67788888888887 5666777766777766666654331110000           0


Q ss_pred             chhhHhhhcCCCCc-eEEEEecCchhhHhh-hhhhhhcccceeeEeccceeeeEeccccccccCCC-CccccccccEEec
Q 045968          191 EVLIQELLGLKYLE-VLELSLGSYHALQIL-LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRR-EPFVFRNLHRVTM  267 (402)
Q Consensus       191 ~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~-~~~~~~~L~~L~l  267 (402)
                      ...-..+..+..|+ .+.+..  ...+... ....-...          ++..+.+.+.-...... ....+++|+.|++
T Consensus       166 ~i~~~~f~~~~~L~~~i~~~~--~~~l~~~~~~~~~~~~----------~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L  233 (329)
T 3sb4_A          166 RWEHFAFIEGEPLETTIQVGA--MGKLEDEIMKAGLQPR----------DINFLTIEGKLDNADFKLIRDYMPNLVSLDI  233 (329)
T ss_dssp             TTTTSCEEESCCCEEEEEECT--TCCHHHHHHHTTCCGG----------GCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred             cccccccccccccceeEEecC--CCcHHHHHhhcccCcc----------ccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence            00001122333343 333321  1111111 11111111          22222222211000000 0002566777777


Q ss_pred             ccccCcccCc--ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccc-eeecCccccccccccCc-cCCC
Q 045968          268 VLCHKLKDVT--FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQ-RLNLEDLPNLESIYWKP-LPFT  343 (402)
Q Consensus       268 ~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~i~~~~-~~~~  343 (402)
                      .++ .++.++  .|..+++|+.|++.++  ++.+..           ..+.++++|+ .+.+.+  .++.|.... ..|+
T Consensus       234 ~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~  297 (329)
T 3sb4_A          234 SKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCD  297 (329)
T ss_dssp             TTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCT
T ss_pred             CCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceEEchhhhhCCc
Confidence            665 456654  4566677777777664  444322           3556666776 777765  555554332 2366


Q ss_pred             CccEEEecCCCCCCCCCCCCCCCCCCeeEE
Q 045968          344 RLKEMAVLGCDQLEKLPVDSNSAKERKFVI  373 (402)
Q Consensus       344 ~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~  373 (402)
                      +|+.+++.+ .+++.++........+++.+
T Consensus       298 ~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          298 NLRYVLATG-DKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             TEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred             cCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence            777777643 35666655444444555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.21  E-value=3.6e-11  Score=120.53  Aligned_cols=123  Identities=17%  Similarity=0.176  Sum_probs=100.0

Q ss_pred             ccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEE
Q 045968           64 HLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLN  143 (402)
Q Consensus        64 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~  143 (402)
                      .|+.|++++| .+..+|.  +..+++|++|++++|  .++.+|..++.+. +|++|++++|.+..+| .+..+++|+.|+
T Consensus       442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN--RLRALPPALAALR-CLEVLQASDNALENVD-GVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSS--CCCCCCGGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred             CceEEEecCC-CCCCCcC--ccccccCcEeecCcc--cccccchhhhcCC-CCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence            5889999988 7888876  889999999999999  8888888899888 9999999999999888 888999999999


Q ss_pred             ccCCCCcccc--chhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEE
Q 045968          144 LRWTGALIRI--PRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLE  207 (402)
Q Consensus       144 l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  207 (402)
                      +++ +.++.+  |.. +.++++|++|++.+|.+...+            .........+++|+.|+
T Consensus       515 Ls~-N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~------------~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          515 LCN-NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE------------GIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCS-SCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS------------SCTTHHHHHCTTCSEEE
T ss_pred             CCC-CCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc------------cHHHHHHHHCcccCccC
Confidence            998 577777  554 899999999999999886421            11122344477787775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.18  E-value=1.2e-10  Score=100.23  Aligned_cols=124  Identities=26%  Similarity=0.279  Sum_probs=105.6

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      ..+...+..+..+|... .++++.|++++|.+..++.. ..+++|++|++++| .+..++...|..+++|++|++++|  
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N--   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN--   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC--
Confidence            45666777788887532 36899999999999988744 78999999999999 888888777999999999999999  


Q ss_pred             cccccc-cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCcc
Q 045968          101 GRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALI  151 (402)
Q Consensus       101 ~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~  151 (402)
                      .++.++ ..|..+. +|++|++++|.+..+|.. +..+++|+.|++.+| .+.
T Consensus        89 ~l~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN-PLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CEE
T ss_pred             ccCEeCHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCccccEEEeCCC-Cee
Confidence            899885 5688888 999999999999999875 788999999999994 443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.18  E-value=7.6e-11  Score=118.16  Aligned_cols=152  Identities=19%  Similarity=0.181  Sum_probs=115.2

Q ss_pred             CCCCccceEe-ccccccccccchHH-----hcc--CCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccH
Q 045968           60 PTCPHLLTLF-LDFNQELEMIADGF-----FQL--MPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPE  131 (402)
Q Consensus        60 ~~~~~L~~L~-l~~~~~l~~~~~~~-----~~~--l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~  131 (402)
                      ..+++|+.|+ ++.+ .+.+++.-.     +..  ...|++|++++|  .++.+|. ++.+. +|++|++++|.+..+|.
T Consensus       406 ~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n--~l~~lp~-~~~l~-~L~~L~Ls~N~l~~lp~  480 (567)
T 1dce_A          406 QYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHK--DLTVLCH-LEQLL-LVTHLDLSHNRLRALPP  480 (567)
T ss_dssp             HHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTS--CCSSCCC-GGGGT-TCCEEECCSSCCCCCCG
T ss_pred             HHHHhcccCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCC--CCCCCcC-ccccc-cCcEeecCcccccccch
Confidence            4578888888 4544 333332210     111  136999999999  8999987 88888 99999999999999999


Q ss_pred             hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEec
Q 045968          132 ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLG  211 (402)
Q Consensus       132 ~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  211 (402)
                      .++.+++|+.|++++ +.++.+| . +.++++|++|++++|.+...              .....+..+++|+.|+++++
T Consensus       481 ~~~~l~~L~~L~Ls~-N~l~~lp-~-l~~l~~L~~L~Ls~N~l~~~--------------~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          481 ALAALRCLEVLQASD-NALENVD-G-VANLPRLQELLLCNNRLQQS--------------AAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             GGGGCTTCCEEECCS-SCCCCCG-G-GTTCSSCCEEECCSSCCCSS--------------STTGGGGGCTTCCEEECTTS
T ss_pred             hhhcCCCCCEEECCC-CCCCCCc-c-cCCCCCCcEEECCCCCCCCC--------------CCcHHHhcCCCCCEEEecCC
Confidence            999999999999999 6888888 3 99999999999999988531              11456888999999999998


Q ss_pred             CchhhHhh-hhhhhhcccceeeE
Q 045968          212 SYHALQIL-LSSNKLKSCIRSLC  233 (402)
Q Consensus       212 ~~~~~~~~-~~~~~~~~~L~~L~  233 (402)
                      ........ .......++|+.|+
T Consensus       544 ~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          544 SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             cCCCCccHHHHHHHHCcccCccC
Confidence            88766432 22333455666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=2.7e-12  Score=110.97  Aligned_cols=126  Identities=23%  Similarity=0.232  Sum_probs=86.8

Q ss_pred             cceEEEccCC--cccccCC-CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968           42 NVRRLSLMQN--QIETVSE-VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL  118 (402)
Q Consensus        42 ~l~~L~l~~~--~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~  118 (402)
                      .++...+.+.  .++.++. ...+++|++|++++| .+..++  .+..+++|++|++++|  .++.+|..+..+. +|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n--~l~~l~~~~~~~~-~L~~   97 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRN--LIKKIENLDAVAD-TLEE   97 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEE--EECSCSSHHHHHH-HCSE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCC--CcccccchhhcCC-cCCE
Confidence            3444444443  3333332 256778888888877 666666  3777888888888888  7777776666666 8888


Q ss_pred             EEecCCCCccccHhhhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeeccc
Q 045968          119 LDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  175 (402)
                      |++++|.+..+| .+..+++|++|++++ +.++.++. ..+..+++|++|++.+|.+.
T Consensus        98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           98 LWISYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEEEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             EECcCCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            888888777776 577778888888887 46666553 33777888888888877663

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.16  E-value=3.2e-11  Score=124.47  Aligned_cols=109  Identities=20%  Similarity=0.209  Sum_probs=87.5

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL  139 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L  139 (402)
                      ..++.|+.|++++| .+..++.. +..+++|++|+|++|  .++.+|..++.+. +|++|+|++|.+..+|..+..+++|
T Consensus       221 ~~l~~L~~L~Ls~n-~l~~l~~~-~~~l~~L~~L~Ls~N--~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          221 YDDQLWHALDLSNL-QIFNISAN-IFKYDFLTRLYLNGN--SLTELPAEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             -CCCCCCEEECTTS-CCSCCCGG-GGGCCSCSCCBCTTS--CCSCCCGGGGGGT-TCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             ccCCCCcEEECCCC-CCCCCChh-hcCCCCCCEEEeeCC--cCcccChhhhCCC-CCCEEeCcCCcCCccChhhcCCCCC
Confidence            56788888888887 66677776 457888888888888  7777887788887 8888888888888888888888888


Q ss_pred             cEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          140 KCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       140 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      ++|+|++ +.++.+|.+ +.++++|++|++.+|.+.
T Consensus       296 ~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          296 KYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred             CEEECCC-CCCCccChh-hhcCCCccEEeCCCCccC
Confidence            8888888 477788876 888888888888888775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.16  E-value=1.4e-10  Score=99.62  Aligned_cols=124  Identities=24%  Similarity=0.271  Sum_probs=103.8

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC---CCCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE---VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~   98 (402)
                      ..+...+.++..+|... ..+++.|++++|.+..++.   ...+++|++|++++| .+..+++..|..+++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence            45666777888887632 3499999999999998875   478999999999999 888876666999999999999999


Q ss_pred             Cccccccc-cccccccccccEEEecCCCCccc-cHhhhcCCCCcEEEccCCCCcc
Q 045968           99 GQGRLKLP-VGMSVLGSSLELLDISCTGITEL-PEELKKLVNLKCLNLRWTGALI  151 (402)
Q Consensus        99 ~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~  151 (402)
                        .++.++ ..+..+. +|++|++++|.+..+ |..+..+++|++|++++| .+.
T Consensus        89 --~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~  139 (192)
T 1w8a_A           89 --KIKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN  139 (192)
T ss_dssp             --CCCEECSSSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred             --cCCccCHHHhcCCC-CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence              899874 4578888 999999999999876 566889999999999994 444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=1.7e-10  Score=107.70  Aligned_cols=264  Identities=14%  Similarity=0.089  Sum_probs=152.7

Q ss_pred             CccceEEEccCC-cccccCCCCC-CCccceEecccccccc--------------------ccchHHhcc--------CCC
Q 045968           40 WENVRRLSLMQN-QIETVSEVPT-CPHLLTLFLDFNQELE--------------------MIADGFFQL--------MPS   89 (402)
Q Consensus        40 ~~~l~~L~l~~~-~~~~~~~~~~-~~~L~~L~l~~~~~l~--------------------~~~~~~~~~--------l~~   89 (402)
                      +.+++.|.+.++ ...++..... +++|++|++++| .+.                    .++..+|.+        |++
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~  102 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT  102 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence            457888888765 1112222222 788999999887 555                    466677888        899


Q ss_pred             CCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCC---CccccchhhhhCCCCC
Q 045968           90 LKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTG---ALIRIPRQLISKFSRL  164 (402)
Q Consensus        90 L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~L  164 (402)
                      |+.+.+.+.   ++.+ +.+|..+. +|+.+++++|.+..++.. +..+.++..+......   ....+...++.++.+|
T Consensus       103 L~~l~L~~~---i~~I~~~aF~~~~-~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          103 LEKVILSEK---IKNIEDAAFKGCD-NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CCC-CBCTT---CCEECTTTTTTCT-TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             CcEEECCcc---ccchhHHHhhcCc-ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            999988773   6666 45677788 999999998888777654 5556666666554311   1222333235566666


Q ss_pred             c-EEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEe
Q 045968          165 R-VLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELK  243 (402)
Q Consensus       165 ~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~  243 (402)
                      + .+.+......              .......-....+++.+.+.+.-..  ..+......+..|+.+++.+++++++.
T Consensus       179 ~~~i~~~~~~~l--------------~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~  242 (329)
T 3sb4_A          179 ETTIQVGAMGKL--------------EDEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIP  242 (329)
T ss_dssp             EEEEEECTTCCH--------------HHHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEEC
T ss_pred             ceeEEecCCCcH--------------HHHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceec
Confidence            6 3443322111              1111111123455667777643211  112222223455555555544444332


Q ss_pred             ccccccccCCCCccccccccEEecccccCcccCc--ccccCCCCC-EEeecCCcchHHHhhcCCCCCCccccCCCCCCCc
Q 045968          244 IDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--FLVFAPNLK-SLDLDGCDAMEEIISVGKFAETPEMMGHISPFEN  320 (402)
Q Consensus       244 i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~  320 (402)
                      -...        . .+.+|+.|.+.++  ++.++  .|..+++|+ .|++.+  .++.+.           ...+.+|++
T Consensus       243 ~~aF--------~-~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~-----------~~aF~~c~~  298 (329)
T 3sb4_A          243 DFTF--------A-QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIE-----------FGAFMGCDN  298 (329)
T ss_dssp             TTTT--------T-TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEEC-----------TTTTTTCTT
T ss_pred             Hhhh--------h-CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEc-----------hhhhhCCcc
Confidence            2111        2 5778899988774  66664  677888898 888877  344442           247788889


Q ss_pred             cceeecCccccccccccCcc-CCCCccEEE
Q 045968          321 LQRLNLEDLPNLESIYWKPL-PFTRLKEMA  349 (402)
Q Consensus       321 L~~L~l~~c~~l~~i~~~~~-~~~~L~~L~  349 (402)
                      |+.|++.+ ..++.|..... .+++|+.+.
T Consensus       299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          299 LRYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             CCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            99998865 45666655332 356666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.13  E-value=3.1e-10  Score=95.99  Aligned_cols=123  Identities=20%  Similarity=0.299  Sum_probs=102.7

Q ss_pred             EEEEeCCccccCCCccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCc
Q 045968           23 FLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQ  100 (402)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  100 (402)
                      -+.....++..+|. ...++++.|++++|.+..++..  ..+++|++|++++| .+..++...+..+++|++|++++|  
T Consensus        11 ~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N--   86 (177)
T 2o6r_A           11 EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN--   86 (177)
T ss_dssp             EEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--
T ss_pred             EEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC--
Confidence            45556667777763 2347999999999999987753  78999999999998 888888877899999999999999  


Q ss_pred             ccccccc-ccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCcc
Q 045968          101 GRLKLPV-GMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALI  151 (402)
Q Consensus       101 ~i~~l~~-~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~  151 (402)
                      .++.++. .+..+. +|++|++++|.+..+|.. +..+++|++|++++| .+.
T Consensus        87 ~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred             CccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Cee
Confidence            8998865 467788 999999999999998876 578999999999995 444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.11  E-value=8.4e-11  Score=121.38  Aligned_cols=152  Identities=18%  Similarity=0.221  Sum_probs=95.7

Q ss_pred             ccceEEEccCCcccccCCC-CCCCccceEecccc----ccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968           41 ENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFN----QELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS  115 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~----~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~  115 (402)
                      ..+++|++.++.+...+.. .....|+.+.+...    ..+. +++..+..++.|+.|++++|  .+..+|..+..+. +
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n--~l~~l~~~~~~l~-~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL--QIFNISANIFKYD-F  248 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTS--CCSCCCGGGGGCC-S
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC--CCCCCChhhcCCC-C
Confidence            4688899988887765433 33344444443321    1233 44555899999999999999  8999988888888 9


Q ss_pred             ccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhH
Q 045968          116 LELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQ  195 (402)
Q Consensus       116 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
                      |++|+|++|.+..+|..+..+++|+.|+|++ +.++.+|.. +.++++|++|++.+|.+...                ..
T Consensus       249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~l----------------p~  310 (727)
T 4b8c_D          249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE-LGSCFQLKYFYFFDNMVTTL----------------PW  310 (727)
T ss_dssp             CSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSS-GGGGTTCSEEECCSSCCCCC----------------CS
T ss_pred             CCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChh-hcCCCCCCEEECCCCCCCcc----------------Ch
Confidence            9999999999999999999999999999999 578899886 99999999999999987531                22


Q ss_pred             hhhcCCCCceEEEEecCch
Q 045968          196 ELLGLKYLEVLELSLGSYH  214 (402)
Q Consensus       196 ~l~~l~~L~~L~l~~~~~~  214 (402)
                      .+..+++|+.|+++++...
T Consensus       311 ~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          311 EFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             STTSCTTCCCEECTTSCCC
T ss_pred             hhhcCCCccEEeCCCCccC
Confidence            4778999999999877654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.11  E-value=1.5e-11  Score=106.26  Aligned_cols=128  Identities=20%  Similarity=0.162  Sum_probs=103.6

Q ss_pred             ccceEecccc-ccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEE
Q 045968           64 HLLTLFLDFN-QELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCL  142 (402)
Q Consensus        64 ~L~~L~l~~~-~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L  142 (402)
                      .++...+.+. ..+..++.. +..+++|++|++++|  .++.+| .+..+. +|++|++++|.+..+|..+..+++|+.|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n--~l~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN--NIEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE--EESCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred             chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC--CCcccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEE
Confidence            3444444443 134555555 899999999999999  898888 788888 9999999999999999888888999999


Q ss_pred             EccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCc
Q 045968          143 NLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSY  213 (402)
Q Consensus       143 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  213 (402)
                      ++++ +.++.+|.  +..+++|++|++.+|.+.              ....+..+..+++|+.|.++++..
T Consensus        99 ~L~~-N~l~~l~~--~~~l~~L~~L~l~~N~i~--------------~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           99 WISY-NQIASLSG--IEKLVNLRVLYMSNNKIT--------------NWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEE-EECCCHHH--HHHHHHSSEEEESEEECC--------------CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ECcC-CcCCcCCc--cccCCCCCEEECCCCcCC--------------chhHHHHHhcCCCCCEEEecCCcc
Confidence            9999 57888873  889999999999999885              223345788899999999986644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.01  E-value=1.2e-09  Score=92.16  Aligned_cols=97  Identities=19%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             EEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccc-cccccccccEEEecC
Q 045968           45 RLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVG-MSVLGSSLELLDISC  123 (402)
Q Consensus        45 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~~L~~L~L~~  123 (402)
                      .++++++.+..+|... .++|++|++++| .+..+++..|..+++|++|++++|  .++.+|.. |..+. +|++|++++
T Consensus        16 ~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~~~l~-~L~~L~L~~   90 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN--KLTAIPTGVFDKLT-QLTQLDLND   90 (174)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--CCCCCCTTTTTTCT-TCCEEECCS
T ss_pred             EEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC--CCCccChhHhCCcc-hhhEEECCC
Confidence            4555555555444322 145555555544 444443333455555555555555  45544332 23444 555555555


Q ss_pred             CCCccccHh-hhcCCCCcEEEccC
Q 045968          124 TGITELPEE-LKKLVNLKCLNLRW  146 (402)
Q Consensus       124 ~~l~~lp~~-i~~l~~L~~L~l~~  146 (402)
                      |.+..+|.. +..+++|+.|++.+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CccceeCHHHhccccCCCEEEeCC
Confidence            555544443 44445555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.01  E-value=1.2e-09  Score=91.87  Aligned_cols=98  Identities=19%  Similarity=0.271  Sum_probs=46.5

Q ss_pred             eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccc-cccccccccEEEec
Q 045968           44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVG-MSVLGSSLELLDIS  122 (402)
Q Consensus        44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~~L~~L~L~  122 (402)
                      +.++++++.++.+|... .++|++|++++| .+..+++..|..+++|++|++++|  .++.++.. |..+. +|++|+++
T Consensus        12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~f~~l~-~L~~L~L~   86 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN--QLTVLPAGVFDKLT-QLTQLSLN   86 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCT-TCCEEECC
T ss_pred             CEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC--CcCccChhhccCCC-CCCEEECC
Confidence            34555555555544322 244555555544 444443333455555555555555  44444322 33444 55555555


Q ss_pred             CCCCccccHh-hhcCCCCcEEEccC
Q 045968          123 CTGITELPEE-LKKLVNLKCLNLRW  146 (402)
Q Consensus       123 ~~~l~~lp~~-i~~l~~L~~L~l~~  146 (402)
                      +|.+..+|.. +..+++|++|++.+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCC
Confidence            5555444432 44445555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.98  E-value=1.1e-09  Score=92.29  Aligned_cols=103  Identities=22%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             cceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEE
Q 045968           65 LLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCL  142 (402)
Q Consensus        65 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L  142 (402)
                      -+.++++++ .+..+|.. +  .++|++|++++|  .++.+ |..|..+. +|++|++++|++..+|.. +..+++|++|
T Consensus        14 ~~~l~~~~n-~l~~iP~~-~--~~~L~~L~Ls~N--~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAG-I--PTDKQRLWLNNN--QITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SSEEECCSS-CCSSCCSC-C--CTTCSEEECCSS--CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CcEEEeCCC-CCCccCCC-c--CCCCcEEEeCCC--CccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            467888877 77888875 3  388999999999  88887 56788888 999999999999999876 5789999999


Q ss_pred             EccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          143 NLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       143 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      ++++ +.++.+|...+.++++|++|++.+|.+.
T Consensus        87 ~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           87 DLND-NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ECCS-SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ECCC-CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            9999 6888888766889999999999998775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.98  E-value=1.2e-09  Score=91.75  Aligned_cols=104  Identities=25%  Similarity=0.286  Sum_probs=86.2

Q ss_pred             ccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcE
Q 045968           64 HLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKC  141 (402)
Q Consensus        64 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~  141 (402)
                      ..+.++++++ .+..+|.. +  .++|++|++++|  .++.+ |..|..+. +|++|++++|.+..+|.. +..+++|++
T Consensus        10 ~~~~l~~s~n-~l~~ip~~-~--~~~l~~L~L~~N--~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           10 SGTTVDCSGK-SLASVPTG-I--PTTTQVLYLYDN--QITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             ETTEEECTTS-CCSSCCSC-C--CTTCSEEECCSS--CCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEEeCCC-CcCccCcc-C--CCCCcEEEcCCC--cCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCE
Confidence            4578888877 77788765 2  378999999999  88887 56678888 999999999999988776 578999999


Q ss_pred             EEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          142 LNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       142 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      |++++ +.++.++...+.++++|++|++.+|.+.
T Consensus        83 L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCC-CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            99998 6888888766888999999999988764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.90  E-value=6.2e-08  Score=92.76  Aligned_cols=254  Identities=16%  Similarity=0.147  Sum_probs=160.8

Q ss_pred             ccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-cccccccccccc
Q 045968           41 ENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLE  117 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~  117 (402)
                      ..++.+.+.. .++.++..  .. .+|+.+.+..  .+..++..+|.++ +|+.+.+..   .++.+ ..+|..+. +|+
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~-~~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~---~l~~I~~~aF~~c~-~L~  183 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRN-SQIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS---TLEQLKEDIFYYCY-NLK  183 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTT-CCCSEEECCT--TCCEECTTTTTTC-CCCEEECCT---TCCEECSSTTTTCT-TCC
T ss_pred             CCccEEEECC-ccCEehHhhccc-CCccEEEeCC--CccEECHHhcCCC-CceEEEeCC---CccEehHHHhhCcc-cCC
Confidence            4566666643 34445433  34 4799998875  4788888888886 699999986   47777 46788888 999


Q ss_pred             EEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhh
Q 045968          118 LLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQEL  197 (402)
Q Consensus       118 ~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (402)
                      .+++.+|++..++.....+.+|+.+.+..  .++.++..++.++++|+.+.+..+- ...            ...   .+
T Consensus       184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l-~~I------------~~~---aF  245 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENV-STI------------GQE---AF  245 (401)
T ss_dssp             EEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTC-CEE------------CTT---TT
T ss_pred             eeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCc-cCc------------ccc---cc
Confidence            99999999999988765679999999975  5888888889999999999987532 110            111   12


Q ss_pred             hcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcc---
Q 045968          198 LGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLK---  274 (402)
Q Consensus       198 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~---  274 (402)
                      .. .+|+.+.+..                           +++++.-...        . .+++|+.+.+.++ .+.   
T Consensus       246 ~~-~~L~~i~lp~---------------------------~i~~I~~~aF--------~-~c~~L~~l~l~~~-~~~~~~  287 (401)
T 4fdw_A          246 RE-SGITTVKLPN---------------------------GVTNIASRAF--------Y-YCPELAEVTTYGS-TFNDDP  287 (401)
T ss_dssp             TT-CCCSEEEEET---------------------------TCCEECTTTT--------T-TCTTCCEEEEESS-CCCCCT
T ss_pred             cc-CCccEEEeCC---------------------------CccEEChhHh--------h-CCCCCCEEEeCCc-cccCCc
Confidence            22 4677777741                           1222211110        1 4666777766554 121   


Q ss_pred             --cC--cccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCcc-CCCCccEEE
Q 045968          275 --DV--TFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPL-PFTRLKEMA  349 (402)
Q Consensus       275 --~l--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~-~~~~L~~L~  349 (402)
                        .+  ..|..+++|+.+.+.+  .++.+..           ..+.+|++|+.+.|..  +++.|..... .| +|+.+.
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~  351 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIPE--SIRILGQ-----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVK  351 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEE
T ss_pred             ccEECHHHhhCCccCCeEEeCC--ceEEEhh-----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEE
Confidence              22  2566677788877764  2444322           4666777888887753  4666654333 25 788888


Q ss_pred             ecCCCCCCCCCCCCCCCC-CCeeEEEcc
Q 045968          350 VLGCDQLEKLPVDSNSAK-ERKFVIRGE  376 (402)
Q Consensus       350 i~~c~~L~~lp~~~~~~~-~~~~~~~~~  376 (402)
                      +.+. .+..++.+..... .++..+..+
T Consensus       352 l~~n-~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          352 VEGT-TPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             ECCS-SCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             EcCC-CCcccccccccCCCCCccEEEeC
Confidence            8664 4555554433322 344455544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.85  E-value=2.9e-07  Score=88.11  Aligned_cols=216  Identities=12%  Similarity=0.142  Sum_probs=133.2

Q ss_pred             cceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~  120 (402)
                      +|+.+.+..+ ++.++.. ..-.+|+.+.+..  .+..++..+|.+|++|+.+++.++  .++.++....... +|+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n--~l~~I~~~aF~~~-~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT--KITKLPASTFVYA-GIEEVL  209 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS--CCSEECTTTTTTC-CCSEEE
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCC--CccEehHHHhhCcccCCeeecCCC--cceEechhhEeec-ccCEEE
Confidence            5777777654 5555443 1224688887774  567777777888888888888887  7777754433355 888888


Q ss_pred             ecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          121 ISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       121 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      +.. .+..++.. +.++++|+.+++..  .++.++..++.+ .+|+.+.+... ...               -.-..+..
T Consensus       210 lp~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~~---------------I~~~aF~~  269 (401)
T 4fdw_A          210 LPV-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VTN---------------IASRAFYY  269 (401)
T ss_dssp             CCT-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CCE---------------ECTTTTTT
T ss_pred             eCC-chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-ccE---------------EChhHhhC
Confidence            874 46666554 67788888888875  467777766766 67888877432 211               11223556


Q ss_pred             CCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCc--
Q 045968          200 LKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVT--  277 (402)
Q Consensus       200 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--  277 (402)
                      +++|+.+.+..+.....                     .+..+.-.        ... .|++|+.+.+.+  .++.++  
T Consensus       270 c~~L~~l~l~~~~~~~~---------------------~~~~I~~~--------aF~-~c~~L~~l~l~~--~i~~I~~~  317 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDD---------------------PEAMIHPY--------CLE-GCPKLARFEIPE--SIRILGQG  317 (401)
T ss_dssp             CTTCCEEEEESSCCCCC---------------------TTCEECTT--------TTT-TCTTCCEECCCT--TCCEECTT
T ss_pred             CCCCCEEEeCCccccCC---------------------cccEECHH--------Hhh-CCccCCeEEeCC--ceEEEhhh
Confidence            77777777763221100                     01111100        011 577888888864  466653  


Q ss_pred             ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcc
Q 045968          278 FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDL  329 (402)
Q Consensus       278 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  329 (402)
                      .|..+++|+.+.|..+  ++.+.           ...+..+ +|+.|.+.+.
T Consensus       318 aF~~c~~L~~l~lp~~--l~~I~-----------~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN--VTQIN-----------FSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTTTCCSCCEEEECTT--CCEEC-----------TTSSSSS-CCCEEEECCS
T ss_pred             hhcCCCCccEEEECcc--ccEEc-----------HHhCCCC-CCCEEEEcCC
Confidence            5667788888888653  33332           2356667 8888888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.74  E-value=9.4e-08  Score=91.39  Aligned_cols=124  Identities=15%  Similarity=0.236  Sum_probs=57.9

Q ss_pred             ccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-cccccccc
Q 045968           37 VKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLG  113 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~  113 (402)
                      +.++.+|+.+.+.. .++.+...  ..|.+|+.+.+..  .+..++..+|.+|.+|+.+.+..+   +..+ ..+|..+.
T Consensus        67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~~---l~~i~~~aF~~~~  140 (394)
T 4fs7_A           67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPLM---LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCTT---CCEECTTTTTTCC
T ss_pred             hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccCc---eeeecceeeeccc
Confidence            44555666666542 24444433  4556666666543  244555555666666555544332   2222 11222221


Q ss_pred             ccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968          114 SSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA  171 (402)
Q Consensus       114 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  171 (402)
                       .+.. .+. .....++. .+..+.+|+.+.+..  .+..++..++.++.+|+.+.+..
T Consensus       141 -~~~~-~~~-~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          141 -FKEI-TIP-EGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             -CSEE-ECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred             -cccc-ccC-ccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence             1111 111 11112221 255666777777654  34455555566666666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.72  E-value=3.1e-08  Score=92.96  Aligned_cols=102  Identities=17%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             EEEccCC-cccccCCCCCCCccceEeccc-cccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEe
Q 045968           45 RLSLMQN-QIETVSEVPTCPHLLTLFLDF-NQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDI  121 (402)
Q Consensus        45 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L  121 (402)
                      .++.+++ .+..+|.+..+++|++|++++ | .+..+++..|..+++|++|+|++|  .++.+ |..|..+. +|++|+|
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N--~l~~~~~~~~~~l~-~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS--GLRFVAPDAFHFTP-RLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS--CCCEECTTGGGSCS-CCCEEEC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC--ccceeCHHHhcCCc-CCCEEeC
Confidence            3455665 666666655666777777775 4 666666555777777777777777  66666 34556666 7777777


Q ss_pred             cCCCCccccHhhhcCCCCcEEEccCCCCcc
Q 045968          122 SCTGITELPEELKKLVNLKCLNLRWTGALI  151 (402)
Q Consensus       122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~  151 (402)
                      ++|.+..+|..+....+|+.|++.+ +.+.
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~-N~~~  116 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSG-NPLH  116 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCS-SCCC
T ss_pred             CCCccceeCHHHcccCCceEEEeeC-CCcc
Confidence            7777776665544333477777766 3443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.63  E-value=2.4e-08  Score=94.67  Aligned_cols=108  Identities=12%  Similarity=0.065  Sum_probs=50.8

Q ss_pred             CCccceEeccccccccccchHHhc-----cCCCCCEEEccCCCcccccc-cccc-ccccccccEEEecCCCCccccH---
Q 045968           62 CPHLLTLFLDFNQELEMIADGFFQ-----LMPSLKVLKMSNCGQGRLKL-PVGM-SVLGSSLELLDISCTGITELPE---  131 (402)
Q Consensus        62 ~~~L~~L~l~~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~~i~~l-~~~~-~~l~~~L~~L~L~~~~l~~lp~---  131 (402)
                      .++|+.|++++| .+.......+.     ..++|++|++++|  .+... ...+ ..+. +|++|++++|.+...+.   
T Consensus        71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC--QLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC--CCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHH
T ss_pred             HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC--CCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHH
Confidence            345666666655 34332222121     1246666666666  44421 1112 2233 56666666665543211   


Q ss_pred             --hh-hcCCCCcEEEccCCCCccccch----hhhhCCCCCcEEEeeeecc
Q 045968          132 --EL-KKLVNLKCLNLRWTGALIRIPR----QLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       132 --~i-~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~  174 (402)
                        .+ ...++|++|++++| .++....    .++..+++|++|++.+|.+
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l  195 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGL  195 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred             HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence              11 13455666666663 4433111    1134566666666666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.63  E-value=6.4e-08  Score=90.74  Aligned_cols=103  Identities=20%  Similarity=0.183  Sum_probs=86.5

Q ss_pred             ceEeccccccccccchHHhccCCCCCEEEccC-CCccccccc-cccccccccccEEEecCCCCccccH-hhhcCCCCcEE
Q 045968           66 LTLFLDFNQELEMIADGFFQLMPSLKVLKMSN-CGQGRLKLP-VGMSVLGSSLELLDISCTGITELPE-ELKKLVNLKCL  142 (402)
Q Consensus        66 ~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L  142 (402)
                      ..++.+++..+..+|.  +..+++|++|+|++ |  .+..++ ..|..+. +|++|+|++|.+..++. .+.++++|+.|
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n--~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ--HLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS--SCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC--CCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            3456665436788888  89999999999996 8  899885 5688888 99999999999998866 47899999999


Q ss_pred             EccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          143 NLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       143 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      +|++ +.++.+|...+..++ |++|++.+|.+.
T Consensus        86 ~l~~-N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSF-NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCS-SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCC-CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999 788999887566665 999999998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.59  E-value=6.3e-08  Score=91.80  Aligned_cols=192  Identities=12%  Similarity=0.060  Sum_probs=102.7

Q ss_pred             CCCccceEecccccc-ccccchHHhccCCCCCEEEccCCCcccccc-ccccccc-----cccccEEEecCCCCcccc--H
Q 045968           61 TCPHLLTLFLDFNQE-LEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVL-----GSSLELLDISCTGITELP--E  131 (402)
Q Consensus        61 ~~~~L~~L~l~~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l-----~~~L~~L~L~~~~l~~lp--~  131 (402)
                      .++..+.+++.+|-. +.+ ..-.-.-.++|++|++++|  .++.. ...+...     . +|++|++++|.+....  .
T Consensus        45 ~~~~~~~lnl~~cl~e~~~-~~l~~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~  120 (372)
T 3un9_A           45 VLPPSELLDHLFFHYEFQN-QRFSAEVLSSLRQLNLAGV--RMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRT  120 (372)
T ss_dssp             CSCHHHHHHHHHHHHHHHT-HHHHHHHHTTCCEEECTTS--CCCHHHHHHHHHHHSSCSS-CEEEEECTTCCCCHHHHHH
T ss_pred             CCChhhhHHHHHHHHHhcC-HHHHHHHHhhCCEEEecCC--CCCHHHHHHHHHHHhhCCC-CceEEEecCCCCCHHHHHH
Confidence            445556666666521 111 1110122467888888888  66642 2222222     3 7888888888775321  1


Q ss_pred             hhhcCCCCcEEEccCCCCccccchhhh-----hCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceE
Q 045968          132 ELKKLVNLKCLNLRWTGALIRIPRQLI-----SKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVL  206 (402)
Q Consensus       132 ~i~~l~~L~~L~l~~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  206 (402)
                      ....+.+|++|++++| .++......+     ...++|++|++.+|.+....           .......+...++|++|
T Consensus       121 l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~-----------~~~l~~~L~~~~~L~~L  188 (372)
T 3un9_A          121 LLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAG-----------VAVLMEGLAGNTSVTHL  188 (372)
T ss_dssp             THHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH-----------HHHHHHHHHTCSSCCEE
T ss_pred             HHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHH-----------HHHHHHHHhcCCCcCEE
Confidence            2334567888888884 6655333223     24678888888888764210           11123345677888888


Q ss_pred             EEEecCchhh--HhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC-ccccccccEEecccccCccc
Q 045968          207 ELSLGSYHAL--QILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE-PFVFRNLHRVTMVLCHKLKD  275 (402)
Q Consensus       207 ~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~  275 (402)
                      +++++.....  ..+.......++|+.|++++|.+......      .+.. ....++|++|++++| .+++
T Consensus       189 ~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~------~l~~~L~~~~~L~~L~Ls~N-~i~~  253 (372)
T 3un9_A          189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL------ALARAAREHPSLELLHLYFN-ELSS  253 (372)
T ss_dssp             ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH------HHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred             eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH------HHHHHHHhCCCCCEEeccCC-CCCH
Confidence            8887655432  22333333334455555544433211100      0000 004577888888887 5655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.42  E-value=8.6e-08  Score=80.02  Aligned_cols=87  Identities=9%  Similarity=0.077  Sum_probs=53.9

Q ss_pred             ccccEEecccccCccc--CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCC----CCccceeecCcccccc
Q 045968          260 RNLHRVTMVLCHKLKD--VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISP----FENLQRLNLEDLPNLE  333 (402)
Q Consensus       260 ~~L~~L~l~~~~~l~~--l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~----l~~L~~L~l~~c~~l~  333 (402)
                      .+|+.|++++| .+++  +..+..+++|++|++++|..+++...           ..+..    .++|++|+|++|++++
T Consensus        61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcCC
Confidence            35777777777 3655  34556677777777777776666432           12222    3467777777777664


Q ss_pred             ccccC-ccCCCCccEEEecCCCCCCC
Q 045968          334 SIYWK-PLPFTRLKEMAVLGCDQLEK  358 (402)
Q Consensus       334 ~i~~~-~~~~~~L~~L~i~~c~~L~~  358 (402)
                      +-... ...+++|++|++++|++++.
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            43221 12467777777777777764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.37  E-value=8.1e-06  Score=77.83  Aligned_cols=126  Identities=12%  Similarity=0.201  Sum_probs=84.1

Q ss_pred             ccCCc-cceEEEccCCcccccCCC--CCCCccceEecccc--ccccccchHHhccCCCCCEEEccCCCcccccc-ccccc
Q 045968           37 VKGWE-NVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFN--QELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMS  110 (402)
Q Consensus        37 ~~~~~-~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~--~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~  110 (402)
                      +.+++ .|+.+.+..+ ++.+...  ..|.+|+.+.+..+  ..+..++..+|..|.+|+.+.+..+   ++.+ ...|.
T Consensus        59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---~~~I~~~aF~  134 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---VTEIDSEAFH  134 (394)
T ss_dssp             TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---CSEECTTTTT
T ss_pred             ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---cceehhhhhh
Confidence            44553 5888888643 5666544  67899999988765  2477788888999999988877664   5555 34566


Q ss_pred             cccccccEEEecCCCCccccH-hhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968          111 VLGSSLELLDISCTGITELPE-ELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA  171 (402)
Q Consensus       111 ~l~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  171 (402)
                      .+. +|+.+.+.. .+..++. .+..+.+|+.+.+..  .++.++..++.. .+|+.+.+..
T Consensus       135 ~c~-~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~  191 (394)
T 4gt6_A          135 HCE-ELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA  191 (394)
T ss_dssp             TCT-TCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred             hhc-ccccccccc-eeeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence            677 888888865 3344433 366777888888765  456666554543 4677776643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.31  E-value=1.3e-06  Score=82.11  Aligned_cols=62  Identities=26%  Similarity=0.355  Sum_probs=35.6

Q ss_pred             ccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhh--cCCCCceE
Q 045968          129 LPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELL--GLKYLEVL  206 (402)
Q Consensus       129 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L  206 (402)
                      +...+..+++|+.|++.+|..+ .++.  + .+++|++|.+..|.+.               ...+..+.  .+|+|+.|
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l~---------------~~~l~~l~~~~lp~L~~L  224 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGLP---------------DSVVEDILGSDLPNLEKL  224 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBCC---------------HHHHHHHHHSBCTTCCEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCCC---------------hHHHHHHHHccCCCCcEE
Confidence            3344566677777777764222 2332  2 2667777777766552               23334443  56777777


Q ss_pred             EEE
Q 045968          207 ELS  209 (402)
Q Consensus       207 ~l~  209 (402)
                      .++
T Consensus       225 ~L~  227 (362)
T 2ra8_A          225 VLY  227 (362)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.29  E-value=2.8e-05  Score=74.08  Aligned_cols=114  Identities=13%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             ccccCCC--CCCC-ccceEeccccccccccchHHhccCCCCCEEEccCCC-cccccc-ccccccccccccEEEecCCCCc
Q 045968           53 IETVSEV--PTCP-HLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG-QGRLKL-PVGMSVLGSSLELLDISCTGIT  127 (402)
Q Consensus        53 ~~~~~~~--~~~~-~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~i~~l-~~~~~~l~~~L~~L~L~~~~l~  127 (402)
                      ++.+.+.  ..+. .|+.+.+..  .+..++..+|.+|.+|+.+.+..+. -.++.+ ..+|..+. +|+.+.+.. .+.
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-~L~~i~~~~-~~~  126 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-ELTDIPILD-SVT  126 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-TCCBCGGGT-TCS
T ss_pred             eeEcCHhhccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcc-cceeeccCC-ccc
Confidence            3445443  3453 589998874  5788888889999999999998751 136666 45677777 888776655 355


Q ss_pred             cccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeee
Q 045968          128 ELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI  172 (402)
Q Consensus       128 ~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  172 (402)
                      .++.. +..+.+|+.+.+..  .+..++..++..+.+|+.+.+...
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eehhhhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence            55544 67889999999975  566777767889999999987653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=1.9e-06  Score=71.82  Aligned_cols=83  Identities=13%  Similarity=0.120  Sum_probs=35.7

Q ss_pred             CCCEEEccCCCcccccc-ccccccccccccEEEecCC-CCcccc-HhhhcC----CCCcEEEccCCCCccccchhhhhCC
Q 045968           89 SLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCT-GITELP-EELKKL----VNLKCLNLRWTGALIRIPRQLISKF  161 (402)
Q Consensus        89 ~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~-~l~~lp-~~i~~l----~~L~~L~l~~~~~~~~~~~~~l~~l  161 (402)
                      +|++|++++|  .++.. -..+..+. +|++|+|++| .++.-. ..+..+    ++|++|++++|..+++-....+.++
T Consensus        62 ~L~~LDLs~~--~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDS--CIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CEEEEEEESC--CCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             eEeEEeCcCC--CccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            3555555555  44321 12233344 5555555554 233211 112221    2355555555554544333234445


Q ss_pred             CCCcEEEeeeecc
Q 045968          162 SRLRVLRMFAIGY  174 (402)
Q Consensus       162 ~~L~~L~l~~~~~  174 (402)
                      ++|++|++.+|..
T Consensus       139 ~~L~~L~L~~c~~  151 (176)
T 3e4g_A          139 RNLKYLFLSDLPG  151 (176)
T ss_dssp             TTCCEEEEESCTT
T ss_pred             CCCCEEECCCCCC
Confidence            5555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.19  E-value=2.1e-05  Score=74.99  Aligned_cols=104  Identities=14%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHhhhcCCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEELKKLVN  138 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~  138 (402)
                      ..|++|+.+.+..  .+..++..+|..|.+|+.+.+..+   ++.+ ...|..+. .|+.+.+..+ ...+........+
T Consensus       159 ~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~---~~~I~~~~F~~~~-~L~~i~~~~~-~~~i~~~~~~~~~  231 (394)
T 4fs7_A          159 ATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN---LKIIRDYCFAECI-LLENMEFPNS-LYYLGDFALSKTG  231 (394)
T ss_dssp             TTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT---CCEECTTTTTTCT-TCCBCCCCTT-CCEECTTTTTTCC
T ss_pred             cccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC---ceEeCchhhcccc-ccceeecCCC-ceEeehhhcccCC
Confidence            6788999999875  356678788999999999998765   5555 35566677 8887777654 2233344455678


Q ss_pred             CcEEEccCCCCccccchhhhhCCCCCcEEEeeee
Q 045968          139 LKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAI  172 (402)
Q Consensus       139 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  172 (402)
                      |+.+.+..  .++.++..++.++.+|+.+.+...
T Consensus       232 l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          232 VKNIIIPD--SFTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CCEEEECT--TCCEECSSTTTTCSSCCEEEECCT
T ss_pred             CceEEECC--CceecccccccccccceeEEcCCC
Confidence            89888865  456666666888999999888654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.19  E-value=6.1e-06  Score=77.61  Aligned_cols=34  Identities=18%  Similarity=0.152  Sum_probs=20.7

Q ss_pred             ccccccEEecccccCcccC--ccccc-CCCCCEEeecCCc
Q 045968          258 VFRNLHRVTMVLCHKLKDV--TFLVF-APNLKSLDLDGCD  294 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l--~~~~~-l~~L~~L~l~~c~  294 (402)
                      .+++|+.|++++| .+++-  ..+.. +  ...+++++..
T Consensus       305 ~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          305 KIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence            6788999999887 56552  22222 2  3556776643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.94  E-value=0.00045  Score=65.16  Aligned_cols=124  Identities=14%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             ccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccc
Q 045968           37 VKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGS  114 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~  114 (402)
                      .....+|+.+.+.. .++.++..  ..|.+|+.+.+..  .+..++..+|.++ +|+.+.+..+   ++.+........ 
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~---l~~I~~~aF~~~-  113 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER---VKKFGDYVFQGT-  113 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT---CCEECTTTTTTC-
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce---eeEeccceeccC-
Confidence            33445566666642 34444433  5566666666653  3555666666666 4555555432   444432222223 


Q ss_pred             cccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeee
Q 045968          115 SLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFA  171 (402)
Q Consensus       115 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  171 (402)
                      +|+.+.+..+ +..+........+|+.+.+..  .++.+...++..+.+++.+.+..
T Consensus       114 ~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~  167 (379)
T 4h09_A          114 DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSS  167 (379)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECT
T ss_pred             CcccccCCCc-cccccccccccceeeeeeccc--eeeccccchhccccccccccccc
Confidence            5666666542 333333322223455555443  34444444456666666665543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.94  E-value=1.6e-05  Score=67.33  Aligned_cols=111  Identities=15%  Similarity=0.100  Sum_probs=56.6

Q ss_pred             CCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCccccc-----cccccccccccccEEEecCCCCcc--
Q 045968           60 PTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLK-----LPVGMSVLGSSLELLDISCTGITE--  128 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~~L~~L~L~~~~l~~--  128 (402)
                      ...+.|++|++++|..+.+..    ...+...++|++|++++|  .+..     +...+.... +|++|+|++|.+..  
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n--~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSG  109 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC--CCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHH
Confidence            445666666666552332211    122455566666666666  4442     222233334 66666666666653  


Q ss_pred             ---ccHhhhcCCCCcEEEc--cCCCCccccch----hhhhCCCCCcEEEeeeecc
Q 045968          129 ---LPEELKKLVNLKCLNL--RWTGALIRIPR----QLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       129 ---lp~~i~~l~~L~~L~l--~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~  174 (402)
                         +...+...++|++|++  .+ +.++....    ..+...++|++|++.+|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence               2333455556666666  44 34443111    1244456666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.77  E-value=2.4e-05  Score=66.21  Aligned_cols=111  Identities=14%  Similarity=0.053  Sum_probs=82.5

Q ss_pred             ccCCccceEEEccCC-cccc-----cC-CCCCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCccccc-
Q 045968           37 VKGWENVRRLSLMQN-QIET-----VS-EVPTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLK-  104 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~-~~~~-----~~-~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~-  104 (402)
                      +...+.|+.|++++| .+..     +. .....++|++|++++| .+.+..    ...+...+.|++|++++|  .+.. 
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N--~i~~~  108 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN--FISGS  108 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS--CCCHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC--cCCHH
Confidence            445678999999998 7764     21 2266799999999999 665532    233667789999999999  7764 


Q ss_pred             ----cccccccccccccEEEe--cCCCCcc-----ccHhhhcCCCCcEEEccCCCCccc
Q 045968          105 ----LPVGMSVLGSSLELLDI--SCTGITE-----LPEELKKLVNLKCLNLRWTGALIR  152 (402)
Q Consensus       105 ----l~~~~~~l~~~L~~L~L--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~  152 (402)
                          +...+.... +|++|++  ++|.+..     +...+...++|++|++++| .+..
T Consensus       109 g~~~l~~~L~~n~-~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~  165 (185)
T 1io0_A          109 GILALVEALQSNT-SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGP  165 (185)
T ss_dssp             HHHHHHHGGGGCS-SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHH
T ss_pred             HHHHHHHHHHhCC-CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCCh
Confidence                345566666 9999999  8898863     4445677799999999984 5543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.60  E-value=8.8e-05  Score=66.35  Aligned_cols=80  Identities=23%  Similarity=0.256  Sum_probs=44.1

Q ss_pred             ccCCCCCEEEccCCCccccccc---cccccccccccEEEecCCCCccccHhhhcCC--CCcEEEccCCCCccccc-----
Q 045968           85 QLMPSLKVLKMSNCGQGRLKLP---VGMSVLGSSLELLDISCTGITELPEELKKLV--NLKCLNLRWTGALIRIP-----  154 (402)
Q Consensus        85 ~~l~~L~~L~l~~~~~~i~~l~---~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~-----  154 (402)
                      ..+++|+.|++++|  .++.++   ..+..++ +|++|+|++|.+..+ ..+..+.  +|++|++.+|..-..+|     
T Consensus       167 ~~l~~L~~L~Ls~N--~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNN--RLYRLDDMSSIVQKAP-NLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTS--CCCCCGGGTTHHHHST-TCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCC--CCCCCccchhHHhhCC-CCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence            45667777777777  565542   3344555 777777777766655 2233333  66777776643222222     


Q ss_pred             -hhhhhCCCCCcEEE
Q 045968          155 -RQLISKFSRLRVLR  168 (402)
Q Consensus       155 -~~~l~~l~~L~~L~  168 (402)
                       ..++..+++|+.|+
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence             12345566666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.24  E-value=0.00033  Score=62.61  Aligned_cols=61  Identities=25%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             cccccccEEEecCCCCcccc---HhhhcCCCCcEEEccCCCCccccchhhhhCCC--CCcEEEeeeeccc
Q 045968          111 VLGSSLELLDISCTGITELP---EELKKLVNLKCLNLRWTGALIRIPRQLISKFS--RLRVLRMFAIGYD  175 (402)
Q Consensus       111 ~l~~~L~~L~L~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~  175 (402)
                      .++ +|+.|+|++|.+..++   ..+..+++|+.|+|++ |.++.+..  +..+.  +|++|.+.+|.+.
T Consensus       168 ~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE--LDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG--GGGGTTSCCSEEECTTSTTG
T ss_pred             hCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh--hhhcccCCcceEEccCCcCc
Confidence            344 8888888888776543   4566788888888888 56666532  33333  8888888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.00  E-value=0.0026  Score=59.84  Aligned_cols=103  Identities=13%  Similarity=0.151  Sum_probs=56.5

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEecCCCCccccHh-hhcCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLV  137 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~  137 (402)
                      ..+.+++.+.+..  .+..++...|..+..|+.+.+..+   ++.+ ...|..+. +|+.+.+.. .+..++.. +..+.
T Consensus       214 ~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~---v~~I~~~aF~~~~-~l~~i~l~~-~i~~i~~~aF~~c~  286 (379)
T 4h09_A          214 SYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN---VTSIGSFLLQNCT-ALKTLNFYA-KVKTVPYLLCSGCS  286 (379)
T ss_dssp             TTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT---CCEECTTTTTTCT-TCCEEEECC-CCSEECTTTTTTCT
T ss_pred             ccccccceeeecc--ceeEEccccccCCccceEEEcCCC---ccEeCccccceee-hhccccccc-cceecccccccccc
Confidence            4455666665543  344455555666666666666543   4444 23444455 666666643 24444332 45566


Q ss_pred             CCcEEEccCCCCccccchhhhhCCCCCcEEEee
Q 045968          138 NLKCLNLRWTGALIRIPRQLISKFSRLRVLRMF  170 (402)
Q Consensus       138 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  170 (402)
                      +|+.+.+.. +.++.++..++.++.+|+.+.+.
T Consensus       287 ~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          287 NLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence            666666655 45555655556666666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.14  E-value=0.045  Score=46.19  Aligned_cols=84  Identities=10%  Similarity=-0.034  Sum_probs=41.1

Q ss_pred             CCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCccccc-----cccccccccccccEEEecCCCCcc--
Q 045968           60 PTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLK-----LPVGMSVLGSSLELLDISCTGITE--  128 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~~L~~L~L~~~~l~~--  128 (402)
                      ..-+.|++|++.++..+.+-.    ...+..-..|+.|+|++|  .+.+     +...+.... .|++|+|++|.|..  
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n--~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--AISDSEARGLIELIETSP-SLRVLNVESNFLTPEL  114 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--CCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC--CCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHH
Confidence            344556666666532333311    122444556666666666  4542     122233334 66666666666542  


Q ss_pred             ---ccHhhhcCCCCcEEEccC
Q 045968          129 ---LPEELKKLVNLKCLNLRW  146 (402)
Q Consensus       129 ---lp~~i~~l~~L~~L~l~~  146 (402)
                         +-..+..-..|++|+|.+
T Consensus       115 a~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHHhhCCceeEEECCC
Confidence               112233334566666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.03  E-value=0.033  Score=43.68  Aligned_cols=50  Identities=22%  Similarity=0.307  Sum_probs=26.8

Q ss_pred             EEEccCCCcccc--ccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccC
Q 045968           92 VLKMSNCGQGRL--KLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRW  146 (402)
Q Consensus        92 ~L~l~~~~~~i~--~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~  146 (402)
                      .++.++.  .++  .+|..+.   ++|++|+|++|.+..+|.. +..+++|+.|+|.+
T Consensus        12 ~v~Cs~~--~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           12 LVDCGRR--GLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             EEECCSS--CCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred             EEEeCCC--CCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence            3444444  444  5554332   2566666666666666554 44555666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.37  E-value=0.05  Score=42.62  Aligned_cols=56  Identities=27%  Similarity=0.366  Sum_probs=46.1

Q ss_pred             cEEEecCCCCc--cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          117 ELLDISCTGIT--ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       117 ~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      ..++-++++++  .+|..+  -.+|++|+|++ |.++.++.+++..+++|++|++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence            36677888888  888653  34799999999 7999999888899999999999988663

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.38  E-value=0.28  Score=41.28  Aligned_cols=120  Identities=13%  Similarity=0.042  Sum_probs=73.1

Q ss_pred             HHhccCCCCCEEEccCCCcccc-----ccccccccccccccEEEecCCCCcc-----ccHhhhcCCCCcEEEccCCCCcc
Q 045968           82 GFFQLMPSLKVLKMSNCGQGRL-----KLPVGMSVLGSSLELLDISCTGITE-----LPEELKKLVNLKCLNLRWTGALI  151 (402)
Q Consensus        82 ~~~~~l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~  151 (402)
                      .++..-+.|+.|+++++. .+.     .+...+.... .|+.|+|++|.+..     +...+..=+.|++|+|.. +.++
T Consensus        35 ~ll~~n~~L~~L~L~~nn-~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig  111 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMK-RVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLT  111 (197)
T ss_dssp             HHHTTCSSCCEEECTTCC-SSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred             HHHhcCCCccEEECCCCC-CCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence            335667789999998742 343     2344455556 89999999998863     333455567899999988 5666


Q ss_pred             ccch----hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968          152 RIPR----QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS  212 (402)
Q Consensus       152 ~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  212 (402)
                      .-..    +++..-+.|++|++.++.....  +-.|      .......+..-+.|+.|++..+.
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i--g~~g------~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVL--GNQV------EMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCC--CHHH------HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCc--CHHH------HHHHHHHHHhCCCcCeEeccCCC
Confidence            5322    2255666799999875422000  0000      11233456667778888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	402
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 32/227 (14%), Positives = 71/227 (31%), Gaps = 42/227 (18%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
             D+  +    I+   +      L+     + +   +    N+  LSL  NQ++ +  + 
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 238

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS----- 115
           +  +L  L L  NQ   +        +  L  LK+       +    G++ L +      
Sbjct: 239 SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 295

Query: 116 -------------LELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFS 162
                        L  L +    I+++   +  L  L+ L        +       S  +
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK--VSDV----SSLA 348

Query: 163 RLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS 209
            L  +   + G+++  +              +  L  L  +  L L+
Sbjct: 349 NLTNINWLSAGHNQISD--------------LTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 12/97 (12%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 1   MHDVIRDMAIWITCEIEKEKRNFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVP 60
             ++  +    I+     +   +L      + +   V     ++RL    N++  VS + 
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLA 348

Query: 61  TCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSN 97
              ++  L    NQ  ++        +  +  L +++
Sbjct: 349 NLTNINWLSAGHNQISDLTP---LANLTRITQLGLND 382

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 44  RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRL 103
           R L L    +  +  +     +  L L  N+ L  +      L   L+VL+ S+     +
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALR-CLEVLQASDNALENV 58

Query: 104 KLPVGMSVLGSSLELLDISCTGITELP--EELKKLVNLKCLNLRWT--GALIRIPRQLIS 159
                +  L      L +    + +    + L     L  LNL+         I  +L  
Sbjct: 59  DGVANLPRLQE----LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 160 KFSRLRVL 167
               +  +
Sbjct: 115 MLPSVSSI 122

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 44/292 (15%), Positives = 84/292 (28%), Gaps = 43/292 (14%)

Query: 42  NVRRLSLMQNQIETV--SEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG 99
           +   L L  N+I  +   +     +L TL L  N+ +  I+ G F  +  L+ L +S   
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ 90

Query: 100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLIS 159
               +LP  M      L + +   T + +        + +  L      +          
Sbjct: 91  LK--ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--- 145

Query: 160 KFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQIL 219
            F  ++ L    I        P+                    L  L             
Sbjct: 146 -FQGMKKLSYIRIADTNITTIPQGL---------------PPSLTELH------------ 177

Query: 220 LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFL 279
           L  NK+     +       L +L + +  I              R   +  +KL  V   
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 237

Query: 280 VFA-PNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP 330
           +     ++ + L        I ++G     P   G+ +   +   ++L   P
Sbjct: 238 LADHKYIQVVYLHNN----NISAIGSNDFCP--PGYNTKKASYSGVSLFSNP 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 11/79 (13%)

Query: 62  CPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI 121
            P L  L +  N+ L  +        P L+ L  S      +        L  +L+ L +
Sbjct: 283 PPSLEELNVSNNK-LIELPALP----PRLERLIASFNHLAEV------PELPQNLKQLHV 331

Query: 122 SCTGITELPEELKKLVNLK 140
               + E P+  + + +L+
Sbjct: 332 EYNPLREFPDIPESVEDLR 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	402
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.66
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.77
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.66
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.72
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.69
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.41

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=1.3e-19  Score=170.90  Aligned_cols=279  Identities=19%  Similarity=0.210  Sum_probs=148.5

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcc
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG  101 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  101 (402)
                      ..+...+.++..++++..+++|+.|++++|.++.++....+++|++|.+++| .+.++++  +..+++|+.|++.++  .
T Consensus        47 ~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n-~i~~i~~--l~~l~~L~~L~~~~~--~  121 (384)
T d2omza2          47 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN--Q  121 (384)
T ss_dssp             CEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS--C
T ss_pred             CEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCccccCCccccccccccc-ccccccc--ccccccccccccccc--c
Confidence            3344444455555555556666666666666666655566666666666665 4555443  556666666666555  3


Q ss_pred             ccccccccccccccccEEEecCCC------------------------------------------CccccHhhhcCCCC
Q 045968          102 RLKLPVGMSVLGSSLELLDISCTG------------------------------------------ITELPEELKKLVNL  139 (402)
Q Consensus       102 i~~l~~~~~~l~~~L~~L~L~~~~------------------------------------------l~~lp~~i~~l~~L  139 (402)
                      ++.++.... .. .+..+....+.                                          ..........++++
T Consensus       122 ~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  199 (384)
T d2omza2         122 ITDIDPLKN-LT-NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL  199 (384)
T ss_dssp             CCCCGGGTT-CT-TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred             ccccccccc-cc-cccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence            333211100 00 11111110000                                          00011234556778


Q ss_pred             cEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhh
Q 045968          140 KCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQIL  219 (402)
Q Consensus       140 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  219 (402)
                      +.+++.+ +.++.++.  ...+++|++|++.++.+..                 +..+..+++|+.+.+..+....+..+
T Consensus       200 ~~l~l~~-n~i~~~~~--~~~~~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~~~  259 (384)
T d2omza2         200 ESLIATN-NQISDITP--LGILTNLDELSLNGNQLKD-----------------IGTLASLTNLTDLDLANNQISNLAPL  259 (384)
T ss_dssp             SEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred             ceeeccC-CccCCCCc--ccccCCCCEEECCCCCCCC-----------------cchhhcccccchhccccCccCCCCcc
Confidence            8888887 46666654  5667888888888877642                 23466677788888876655444332


Q ss_pred             hhhhhhcccceeeEeccceeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHH
Q 045968          220 LSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEI  299 (402)
Q Consensus       220 ~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~  299 (402)
                      .    .+++|          ++|+++++......+.. .++.++.+.+..+ .++.++.+..+++++.|++++|. ++++
T Consensus       260 ~----~~~~L----------~~L~l~~~~l~~~~~~~-~~~~l~~l~~~~n-~l~~~~~~~~~~~l~~L~ls~n~-l~~l  322 (384)
T d2omza2         260 S----GLTKL----------TELKLGANQISNISPLA-GLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDI  322 (384)
T ss_dssp             T----TCTTC----------SEEECCSSCCCCCGGGT-TCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCC
T ss_pred             c----ccccC----------CEeeccCcccCCCCccc-ccccccccccccc-ccccccccchhcccCeEECCCCC-CCCC
Confidence            2    22334          44444443333333333 4566666666665 55555556666666666666653 2222


Q ss_pred             hhcCCCCCCccccCCCCCCCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCC
Q 045968          300 ISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLP  360 (402)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp  360 (402)
                                   ..+..+|+|+.|++++| .+++++. ...+++|++|+++++ +++.++
T Consensus       323 -------------~~l~~l~~L~~L~L~~n-~l~~l~~-l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         323 -------------SPVSSLTKLQRLFFANN-KVSDVSS-LANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             -------------GGGGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCBCG
T ss_pred             -------------cccccCCCCCEEECCCC-CCCCChh-HcCCCCCCEEECCCC-cCCCCh
Confidence                         12455666666666665 4555543 234566666666554 456554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=2.5e-19  Score=168.93  Aligned_cols=276  Identities=18%  Similarity=0.179  Sum_probs=198.5

Q ss_pred             CCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccE
Q 045968           39 GWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLEL  118 (402)
Q Consensus        39 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~  118 (402)
                      .+.+++.|++.+++++.++.+..+++|++|++++| .+.++++  ++++++|++|++++|  .+..++. ++.+. +|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N-~l~~l~~--l~~L~~L~~L~L~~n--~i~~i~~-l~~l~-~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNN--QIADITP-LANLT-NLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS--CCCCCGG-GTTCT-TCCE
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCC-cCCCCcc--ccCCccccccccccc--ccccccc-ccccc-cccc
Confidence            45689999999999999988889999999999999 8888876  899999999999999  8887753 67788 9999


Q ss_pred             EEecCCCCccccHhhhcCCCCcEEEccCC-----------------------------------------CCccccchhh
Q 045968          119 LDISCTGITELPEELKKLVNLKCLNLRWT-----------------------------------------GALIRIPRQL  157 (402)
Q Consensus       119 L~L~~~~l~~lp~~i~~l~~L~~L~l~~~-----------------------------------------~~~~~~~~~~  157 (402)
                      |+++++.+..++... ....+.......+                                         ........ .
T Consensus       115 L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  192 (384)
T d2omza2         115 LTLFNNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-V  192 (384)
T ss_dssp             EECCSSCCCCCGGGT-TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-G
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc-c
Confidence            999998777654321 2222222221110                                         00011111 2


Q ss_pred             hhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccc
Q 045968          158 ISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGF  237 (402)
Q Consensus       158 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  237 (402)
                      ...+++++.+.+..+.+..                 +......++|+.|.+.++....++.+.    ..+          
T Consensus       193 ~~~l~~~~~l~l~~n~i~~-----------------~~~~~~~~~L~~L~l~~n~l~~~~~l~----~l~----------  241 (384)
T d2omza2         193 LAKLTNLESLIATNNQISD-----------------ITPLGILTNLDELSLNGNQLKDIGTLA----SLT----------  241 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCC-----------------CGGGGGCTTCCEEECCSSCCCCCGGGG----GCT----------
T ss_pred             cccccccceeeccCCccCC-----------------CCcccccCCCCEEECCCCCCCCcchhh----ccc----------
Confidence            5678889999988877642                 123456788999999877655543222    223          


Q ss_pred             eeeeEeccccccccCCCCccccccccEEecccccCcccCcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCC
Q 045968          238 ELEELKIDYTEIVRKRREPFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISP  317 (402)
Q Consensus       238 ~L~~L~i~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~  317 (402)
                      +|+.+++.++......+.. .+++|+.|+++++ .++.++.+..++.++.+++..|.. +.+             ..+..
T Consensus       242 ~L~~L~l~~n~l~~~~~~~-~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l-~~~-------------~~~~~  305 (384)
T d2omza2         242 NLTDLDLANNQISNLAPLS-GLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQL-EDI-------------SPISN  305 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGT-TCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-SCC-------------GGGGG
T ss_pred             ccchhccccCccCCCCccc-ccccCCEeeccCc-ccCCCCcccccccccccccccccc-ccc-------------cccch
Confidence            4566666666554444444 7899999999988 788888888999999999998653 222             24677


Q ss_pred             CCccceeecCccccccccccCccCCCCccEEEecCCCCCCCCCCCCCCCCCCeeEEEc
Q 045968          318 FENLQRLNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSNSAKERKFVIRG  375 (402)
Q Consensus       318 l~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~~~~  375 (402)
                      +++++.|+++++ +++++.. ...+|+|++|++++| +++.++. .... ++++.+..
T Consensus       306 ~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~~-l~~l-~~L~~L~l  358 (384)
T d2omza2         306 LKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN-KVSDVSS-LANL-TNINWLSA  358 (384)
T ss_dssp             CTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGC-TTCCEEEC
T ss_pred             hcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC-CCCCChh-HcCC-CCCCEEEC
Confidence            899999999986 6666653 456899999999998 7888873 2333 67777764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=2.2e-17  Score=150.83  Aligned_cols=266  Identities=18%  Similarity=0.135  Sum_probs=153.5

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+...+.++..+|.-- .+++++|++++|.++.++.  ...+++|++|++++| .+..+++..|..+++|++|++.+| 
T Consensus        13 ~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n-   89 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-   89 (305)
T ss_dssp             TEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccCC-
Confidence            44555666677776521 3578888888888888764  367788888888877 666666655788888888888888 


Q ss_pred             ccccccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCcc-ccchhhhhCCCCCcEEEeeeeccccc
Q 045968          100 QGRLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALI-RIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       100 ~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                       .++.+|..+.  . .++.|++..|.+..++.. +.....+..++...+.... ......+..+++|+++++.++.+...
T Consensus        90 -~l~~l~~~~~--~-~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          90 -QLKELPEKMP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             -CCSBCCSSCC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             -ccCcCccchh--h-hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence             7777765433  3 777888888877776654 4556667777776632211 12223366777888888777665421


Q ss_pred             ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcc
Q 045968          178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPF  257 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~  257 (402)
                                  .      ...+++|+.|++.++......  +......+.++.|.++++.+..+.....        . 
T Consensus       166 ------------~------~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~s~n~l~~~~~~~~--------~-  216 (305)
T d1xkua_         166 ------------P------QGLPPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL--------A-  216 (305)
T ss_dssp             ------------C------SSCCTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG--------G-
T ss_pred             ------------C------cccCCccCEEECCCCcCCCCC--hhHhhccccccccccccccccccccccc--------c-
Confidence                        0      112456666666543322211  1112222334444444333333321110        1 


Q ss_pred             ccccccEEecccccCcccCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccc
Q 045968          258 VFRNLHRVTMVLCHKLKDVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLP  330 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  330 (402)
                      .+++|+.|++++| .++.++ .+..+++|++|++++| .++.+....|.+.     ......++|+.|++.+++
T Consensus       217 ~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~-----~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         217 NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP-----GYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS-----SCCTTSCCCSEEECCSSS
T ss_pred             ccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCc-----chhcccCCCCEEECCCCc
Confidence            4566666777666 566654 4556666777766664 3444432222211     233445566666666643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=4.3e-17  Score=148.92  Aligned_cols=262  Identities=19%  Similarity=0.257  Sum_probs=170.8

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEE
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLD  120 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~  120 (402)
                      ..+.++-++..++.+|... .+++++|++++| .+..+++..|.++++|++|++++|  .+..+ |..|..+. +|++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n--~~~~i~~~~f~~l~-~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN--KISKISPGAFAPLV-KLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS--CCCCBCTTTTTTCT-TCCEEE
T ss_pred             cCCEEEecCCCCCccCCCC-CCCCCEEECcCC-cCCCcChhHhhccccccccccccc--cccccchhhhhCCC-ccCEec
Confidence            4566777777788887642 378999999998 888888766899999999999999  78877 56788888 999999


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL  200 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  200 (402)
                      +++|+++.+|..  ....++.|++.. +.+..++...+.....+..+....+....             .......+..+
T Consensus        86 l~~n~l~~l~~~--~~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-------------~~~~~~~~~~l  149 (305)
T d1xkua_          86 LSKNQLKELPEK--MPKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGM  149 (305)
T ss_dssp             CCSSCCSBCCSS--CCTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGC
T ss_pred             ccCCccCcCccc--hhhhhhhhhccc-cchhhhhhhhhhccccccccccccccccc-------------cCCCccccccc
Confidence            999999988764  346788999888 57777777667778888888877665432             12223346667


Q ss_pred             CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCcccCc--
Q 045968          201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT--  277 (402)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~--  277 (402)
                      ++|+.+.+..+....++   .  ...++          +++|++.++......+.. ..++.++.|.++++ .++.++  
T Consensus       150 ~~L~~l~l~~n~l~~l~---~--~~~~~----------L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~  213 (305)
T d1xkua_         150 KKLSYIRIADTNITTIP---Q--GLPPS----------LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNG  213 (305)
T ss_dssp             TTCCEEECCSSCCCSCC---S--SCCTT----------CSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTT
T ss_pred             cccCccccccCCccccC---c--ccCCc----------cCEEECCCCcCCCCChhHhhccccccccccccc-cccccccc
Confidence            77877777654433221   1  11223          333344333332222211 14566777777766 555542  


Q ss_pred             ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCccccccccccCc-------cCCCCccEEEe
Q 045968          278 FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESIYWKP-------LPFTRLKEMAV  350 (402)
Q Consensus       278 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~-------~~~~~L~~L~i  350 (402)
                      .+..+++|++|++++|. ++.++            ..+..+++|+.|+++++ +++++....       ...++|+.|++
T Consensus       214 ~~~~l~~L~~L~L~~N~-L~~lp------------~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         214 SLANTPHLRELHLNNNK-LVKVP------------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             TGGGSTTCCEEECCSSC-CSSCC------------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             cccccccceeeeccccc-ccccc------------cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEEC
Confidence            45667777777777763 33332            24566777777777764 465554321       22466677777


Q ss_pred             cCCC
Q 045968          351 LGCD  354 (402)
Q Consensus       351 ~~c~  354 (402)
                      .+.+
T Consensus       280 ~~N~  283 (305)
T d1xkua_         280 FSNP  283 (305)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            6654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.5e-17  Score=142.33  Aligned_cols=82  Identities=21%  Similarity=0.301  Sum_probs=43.3

Q ss_pred             ccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCC
Q 045968           85 QLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL  164 (402)
Q Consensus        85 ~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  164 (402)
                      ..+.+|+.|++.+|  .+++++ .+..++ +|++|++++|.+..++ .+..+++|+.+++.+ +.++.++.  +.++++|
T Consensus        38 ~~l~~L~~L~l~~~--~i~~l~-~l~~l~-~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~-n~~~~i~~--l~~l~~L  109 (227)
T d1h6ua2          38 ADLDGITTLSAFGT--GVTTIE-GVQYLN-NLIGLELKDNQITDLA-PLKNLTKITELELSG-NPLKNVSA--IAGLQSI  109 (227)
T ss_dssp             HHHHTCCEEECTTS--CCCCCT-TGGGCT-TCCEEECCSSCCCCCG-GGTTCCSCCEEECCS-CCCSCCGG--GTTCTTC
T ss_pred             HHcCCcCEEECCCC--CCCcch-hHhcCC-CCcEeecCCceeeccc-ccccccccccccccc-cccccccc--ccccccc
Confidence            34455555555555  555552 345555 5556665555555443 245555556665555 24444443  5555566


Q ss_pred             cEEEeeeecc
Q 045968          165 RVLRMFAIGY  174 (402)
Q Consensus       165 ~~L~l~~~~~  174 (402)
                      +++.+.++..
T Consensus       110 ~~l~l~~~~~  119 (227)
T d1h6ua2         110 KTLDLTSTQI  119 (227)
T ss_dssp             CEEECTTSCC
T ss_pred             cccccccccc
Confidence            6655554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.67  E-value=1.4e-16  Score=146.03  Aligned_cols=128  Identities=20%  Similarity=0.250  Sum_probs=66.7

Q ss_pred             cceEEEccCCcccc---cCC-CCCCCccceEecccccccc-ccchHHhccCCCCCEEEccCCCcccccc-cccccccccc
Q 045968           42 NVRRLSLMQNQIET---VSE-VPTCPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSS  115 (402)
Q Consensus        42 ~l~~L~l~~~~~~~---~~~-~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~  115 (402)
                      +|+.|++.++.+..   +|. +..+++|++|+++++..+. .+|.. |.++++|++|++++|  .+..+ +..+..+. +
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N--~l~~~~~~~~~~~~-~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT--NVSGAIPDFLSQIK-T  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE--CCEEECCGGGGGCT-T
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccc--cccccccccccchh-h
Confidence            45666666655542   322 2556666666665432333 45554 566666666666666  55544 33344444 6


Q ss_pred             ccEEEecCCCCc-cccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCC-cEEEeeeecc
Q 045968          116 LELLDISCTGIT-ELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRL-RVLRMFAIGY  174 (402)
Q Consensus       116 L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~  174 (402)
                      |+++++++|.+. .+|..+.++++|+.+++.++.....+|.. +..+.++ +.+.+..+.+
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccc
Confidence            666666665433 34555666666666666663332344543 4444443 4555554444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.66  E-value=9.5e-17  Score=147.17  Aligned_cols=252  Identities=16%  Similarity=0.124  Sum_probs=168.5

Q ss_pred             CCccceEecccccccc---ccchHHhccCCCCCEEEccCCCcccc-ccccccccccccccEEEecCCCCcccc-HhhhcC
Q 045968           62 CPHLLTLFLDFNQELE---MIADGFFQLMPSLKVLKMSNCGQGRL-KLPVGMSVLGSSLELLDISCTGITELP-EELKKL  136 (402)
Q Consensus        62 ~~~L~~L~l~~~~~l~---~~~~~~~~~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~~L~~L~L~~~~l~~lp-~~i~~l  136 (402)
                      -.+++.|+++++ .+.   .+|.. +.++++|++|+++++. .+. .+|..++++. +|++|++++|++..++ ..+..+
T Consensus        49 ~~~v~~L~L~~~-~l~g~~~lp~~-l~~L~~L~~L~Ls~~N-~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          49 TYRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGIN-NLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEET-TEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGC
T ss_pred             cEEEEEEECCCC-CCCCCCCCChH-HhcCcccccccccccc-cccccccccccccc-ccchhhhccccccccccccccch
Confidence            347899999988 443   46666 8999999999999732 666 7899999999 9999999999998654 458889


Q ss_pred             CCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCC-ceEEEEecCchh
Q 045968          137 VNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYL-EVLELSLGSYHA  215 (402)
Q Consensus       137 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~  215 (402)
                      .+|+.+++..|.....+|.. +.++++|+++++.++....               .....+..+..+ +.+.+..+....
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n~l~~---------------~ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG---------------AIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE---------------ECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             hhhcccccccccccccCchh-hccCcccceeecccccccc---------------ccccccccccccccccccccccccc
Confidence            99999999996666667765 9999999999999887742               122344455554 455554332211


Q ss_pred             hHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCC-ccccccccEEecccccCcccCcccccCCCCCEEeecCCc
Q 045968          216 LQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRRE-PFVFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLDGCD  294 (402)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~~c~  294 (402)
                      ..  +....   .+        ....+++..+.....++. ...+++++.+++.++.....++.+..+++|+.|++++|.
T Consensus       189 ~~--~~~~~---~l--------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         189 KI--PPTFA---NL--------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             EC--CGGGG---GC--------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred             cc--ccccc---cc--------cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCe
Confidence            10  11111   11        223344444433333332 115778888888887333345667778889999998876


Q ss_pred             chHHHhhcCCCCCCccccCCCCCCCccceeecCcccccc-ccccCccCCCCccEEEecCCCCCCCCC
Q 045968          295 AMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLE-SIYWKPLPFTRLKEMAVLGCDQLEKLP  360 (402)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~i~~~~~~~~~L~~L~i~~c~~L~~lp  360 (402)
                      ....++            ..++.+++|++|+++++ .+. .+|. .+.+.+|+.+++++.+.+...|
T Consensus       256 l~g~iP------------~~l~~L~~L~~L~Ls~N-~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         256 IYGTLP------------QGLTQLKFLHSLNVSFN-NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CEECCC------------GGGGGCTTCCEEECCSS-EEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             ecccCC------------hHHhCCCCCCEEECcCC-cccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            533333            35678888999999885 444 4553 2456777777777666555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6e-16  Score=138.41  Aligned_cols=195  Identities=18%  Similarity=0.113  Sum_probs=134.1

Q ss_pred             ccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEE
Q 045968           41 ENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLD  120 (402)
Q Consensus        41 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~  120 (402)
                      ..+..++.++++++.+|... -+++++|++++| .+..++...|.++++|++|++++|  .++.++. ++.+. +|++|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N--~l~~l~~-~~~l~-~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA--ELTKLQV-DGTLP-VLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS--CCCEEEC-CSCCT-TCCEEE
T ss_pred             CCCeEEEccCCCCCeeCcCc-CcCCCEEECcCC-cCCCcCHHHhhccccccccccccc--ccccccc-ccccc-cccccc
Confidence            44555677777788776432 157888898888 788888777888899999999998  7887754 45566 899999


Q ss_pred             ecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcC
Q 045968          121 ISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGL  200 (402)
Q Consensus       121 L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  200 (402)
                      +++|++...+..+..+++|+.|++++ +.+..++...+..+.++++|.+.++.+...               ....+..+
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l---------------~~~~~~~l  147 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTL---------------PPGLLTPT  147 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCC---------------CTTTTTTC
T ss_pred             cccccccccccccccccccccccccc-cccceeecccccccccccccccccccccee---------------cccccccc
Confidence            99988888877788888899999888 466666655577888888888887766431               11223334


Q ss_pred             CCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCc-cccccccEEecccccCcccCc-c
Q 045968          201 KYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREP-FVFRNLHRVTMVLCHKLKDVT-F  278 (402)
Q Consensus       201 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~-~  278 (402)
                      ++++.+.++.+                          +++.          .++.. ..+++|++|+++++ .++.++ .
T Consensus       148 ~~l~~l~l~~N--------------------------~l~~----------~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~  190 (266)
T d1p9ag_         148 PKLEKLSLANN--------------------------NLTE----------LPAGLLNGLENLDTLLLQEN-SLYTIPKG  190 (266)
T ss_dssp             TTCCEEECTTS--------------------------CCSC----------CCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             ccchhcccccc--------------------------cccc----------cCccccccccccceeecccC-CCcccChh
Confidence            44555444432                          2221          11110 14677888888877 577775 4


Q ss_pred             cccCCCCCEEeecCCc
Q 045968          279 LVFAPNLKSLDLDGCD  294 (402)
Q Consensus       279 ~~~l~~L~~L~l~~c~  294 (402)
                      +..+++|+.|++++|+
T Consensus       191 ~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         191 FFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTTTCCCSEEECCSCC
T ss_pred             HCCCCCCCEEEecCCC
Confidence            5567778888887754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.4e-16  Score=142.36  Aligned_cols=87  Identities=14%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             ccccccEEecccccCccc--CcccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccceeecCcccccccc
Q 045968          258 VFRNLHRVTMVLCHKLKD--VTFLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQRLNLEDLPNLESI  335 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~--l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i  335 (402)
                      .+++|++|++++|..+++  +..+..+++|++|++++|..+++..           ...++.+|+|+.|++.+|-.-..+
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~-----------l~~L~~~~~L~~L~l~~~~~d~~l  241 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-----------LLELGEIPTLKTLQVFGIVPDGTL  241 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-----------GGGGGGCTTCCEEECTTSSCTTCH
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH-----------HHHHhcCCCCCEEeeeCCCCHHHH
Confidence            578999999999877875  4577889999999999998876542           235677899999999988333333


Q ss_pred             ccCccCCCCccEEEecCCCCCCCC
Q 045968          336 YWKPLPFTRLKEMAVLGCDQLEKL  359 (402)
Q Consensus       336 ~~~~~~~~~L~~L~i~~c~~L~~l  359 (402)
                      ......+|+|+   + +|.+++.+
T Consensus       242 ~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         242 QLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             HHHHHHSTTSE---E-SCCCSCCT
T ss_pred             HHHHHhCcccc---c-cCccCCCC
Confidence            33334467766   3 67777766

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.6e-16  Score=138.80  Aligned_cols=119  Identities=16%  Similarity=0.184  Sum_probs=65.5

Q ss_pred             EEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCC
Q 045968           45 RLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCT  124 (402)
Q Consensus        45 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~  124 (402)
                      .+++..+.+.+......+.+|+.|.+.+| .+..++.  ++.+++|++|++++|  .+..++. +..+. +|+++++++|
T Consensus        23 ~~~l~~~~~~d~~~~~~l~~L~~L~l~~~-~i~~l~~--l~~l~~L~~L~ls~n--~i~~~~~-l~~l~-~l~~l~~~~n   95 (227)
T d1h6ua2          23 KIAAGKSNVTDTVTQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN--QITDLAP-LKNLT-KITELELSGN   95 (227)
T ss_dssp             HHHTTCSSTTSEECHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS--CCCCCGG-GTTCC-SCCEEECCSC
T ss_pred             HHHhCCCCcCCcCCHHHcCCcCEEECCCC-CCCcchh--HhcCCCCcEeecCCc--eeecccc-ccccc-cccccccccc
Confidence            34444444444333345566666666665 5555532  566666666666666  5555432 45555 6666666666


Q ss_pred             CCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968          125 GITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       125 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      .++.++ .+.++++|+.+++.+| ....++.  +...+.++.+.+..+..
T Consensus        96 ~~~~i~-~l~~l~~L~~l~l~~~-~~~~~~~--~~~~~~~~~l~~~~~~~  141 (227)
T d1h6ua2          96 PLKNVS-AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQI  141 (227)
T ss_dssp             CCSCCG-GGTTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cccccc-cccccccccccccccc-cccccch--hccccchhhhhchhhhh
Confidence            665553 3556666666666653 3333332  45556666666655444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.5e-15  Score=132.39  Aligned_cols=217  Identities=22%  Similarity=0.237  Sum_probs=148.7

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCG   99 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~   99 (402)
                      ..+.....+++.+|.. -..+++.|++++|.++.++.  ...+++|++|+++++ .+..++...+..+..++.+....+.
T Consensus        14 ~~v~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccccccccccccccccccccccccc
Confidence            3455566667777652 23578888888888888775  377888888888877 7777777767888888888776553


Q ss_pred             cccccc-ccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968          100 QGRLKL-PVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       100 ~~i~~l-~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                       .+..+ +..+..+. +|++|++++|++..++.. +....+|+.+++.+ +.++.++..++..+++|++|++.++.+...
T Consensus        92 -~~~~l~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          92 -QLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             -TCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             -ccccccchhhcccc-cCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCccccc
Confidence             66666 55677777 888888888887766543 56678888888888 677888766677888888888888776421


Q ss_pred             ccCCCcccccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCcc
Q 045968          178 HEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPF  257 (402)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~  257 (402)
                                     ....+..+++|+.+.+..+                          .+..+.-..        .. 
T Consensus       169 ---------------~~~~f~~l~~L~~l~l~~N--------------------------~l~~i~~~~--------f~-  198 (284)
T d1ozna_         169 ---------------PERAFRGLHSLDRLLLHQN--------------------------RVAHVHPHA--------FR-  198 (284)
T ss_dssp             ---------------CTTTTTTCTTCCEEECCSS--------------------------CCCEECTTT--------TT-
T ss_pred             ---------------chhhhccccccchhhhhhc--------------------------cccccChhH--------hh-
Confidence                           1123445566665555533                          222221100        01 


Q ss_pred             ccccccEEecccccCcccCc--ccccCCCCCEEeecCCc
Q 045968          258 VFRNLHRVTMVLCHKLKDVT--FLVFAPNLKSLDLDGCD  294 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~  294 (402)
                      .+++|+.|+++++ .++.++  .+..+++|++|++++++
T Consensus       199 ~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         199 DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence            5677888888877 566653  56677888888887754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=6.2e-14  Score=129.49  Aligned_cols=268  Identities=20%  Similarity=0.206  Sum_probs=140.1

Q ss_pred             cceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEe
Q 045968           42 NVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDI  121 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L  121 (402)
                      ++++|++++++++.+|+  ..++|++|++++| .+..+|..    +.+|+.|++.+|  .++.++.    +++.|++|++
T Consensus        39 ~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N-~l~~lp~~----~~~L~~L~l~~n--~l~~l~~----lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE--LPPHLESLVASCN-SLTELPEL----PQSLKSLLVDNN--NLKALSD----LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSCCCS--CCTTCSEEECCSS-CCSSCCCC----CTTCCEEECCSS--CCSCCCS----CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCCCCCC--CCCCCCEEECCCC-CCcccccc----hhhhhhhhhhhc--ccchhhh----hccccccccc
Confidence            46677777777766664  3456777777766 66666542    346777777777  6665532    2336777777


Q ss_pred             cCCCCccccHhhhcCCCCcEEEccCCCCccccchh------------------hhhCCCCCcEEEeeeecccccccCCCc
Q 045968          122 SCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQ------------------LISKFSRLRVLRMFAIGYDRFHEAPED  183 (402)
Q Consensus       122 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~  183 (402)
                      ++|.+..+|. +..+++|++|++.++ .+...+..                  .+..++.++.+.+..+...........
T Consensus       106 ~~n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~  183 (353)
T d1jl5a_         106 SNNQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS  183 (353)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             cccccccccc-hhhhccceeeccccc-cccccccccccccchhhccccccccccccccccceeccccccccccccccccc
Confidence            7777776663 456677777777663 33222211                  134455666666665554332111100


Q ss_pred             c---cccCCcchhhHhhhcCCCCceEEEEecCchhhHhhhhhhhhcccceeeEeccceeeeEeccccccccCCCCccccc
Q 045968          184 S---VLFGGGEVLIQELLGLKYLEVLELSLGSYHALQILLSSNKLKSCIRSLCLDGFELEELKIDYTEIVRKRREPFVFR  260 (402)
Q Consensus       184 ~---~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~L~~L~i~~~~~~~~~~~~~~~~  260 (402)
                      .   .........+.....++.|+.+.++.+....+..      ....+..+          .+..........   ..+
T Consensus       184 ~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~------~~~~l~~~----------~~~~~~~~~~~~---~~~  244 (353)
T d1jl5a_         184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEAL----------NVRDNYLTDLPE---LPQ  244 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEE----------ECCSSCCSCCCC---CCT
T ss_pred             cccccccccccccccccccccccccccccccccccccc------cccccccc----------cccccccccccc---ccc
Confidence            0   0101011122234445666666665433222211      11122222          222221111110   111


Q ss_pred             cccEEecccc--cCcc--------------cCc-ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCCCCCCccce
Q 045968          261 NLHRVTMVLC--HKLK--------------DVT-FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHISPFENLQR  323 (402)
Q Consensus       261 ~L~~L~l~~~--~~l~--------------~l~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~  323 (402)
                      .+....+..+  ..+.              .+. ....+++|++|++++|. ++.+               ...+++|+.
T Consensus       245 ~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~l---------------p~~~~~L~~  308 (353)
T d1jl5a_         245 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIEL---------------PALPPRLER  308 (353)
T ss_dssp             TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCC---------------CCCCTTCCE
T ss_pred             cccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc-cCcc---------------ccccCCCCE
Confidence            2222221111  0000              111 12346899999999975 3333               235789999


Q ss_pred             eecCccccccccccCccCCCCccEEEecCCCCCCCCCCCCC
Q 045968          324 LNLEDLPNLESIYWKPLPFTRLKEMAVLGCDQLEKLPVDSN  364 (402)
Q Consensus       324 L~l~~c~~l~~i~~~~~~~~~L~~L~i~~c~~L~~lp~~~~  364 (402)
                      |++++| .+++++..   +++|++|++++|+ |+++|....
T Consensus       309 L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~  344 (353)
T d1jl5a_         309 LIASFN-HLAEVPEL---PQNLKQLHVEYNP-LREFPDIPE  344 (353)
T ss_dssp             EECCSS-CCSCCCCC---CTTCCEEECCSSC-CSSCCCCCT
T ss_pred             EECCCC-cCCccccc---cCCCCEEECcCCc-CCCCCcccc
Confidence            999876 57777643   4789999999986 999986543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.8e-15  Score=129.09  Aligned_cols=33  Identities=21%  Similarity=0.211  Sum_probs=19.6

Q ss_pred             ccccccEEecccccCcccCcccccCCCCCEEeec
Q 045968          258 VFRNLHRVTMVLCHKLKDVTFLVFAPNLKSLDLD  291 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~l~  291 (402)
                      .+++|++|++++| .+++++.+..+++|++|+|+
T Consensus       176 ~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCC-CCCCChhhcCCCCCCEEEcc
Confidence            4556666666655 55555555566666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=4.2e-15  Score=126.84  Aligned_cols=29  Identities=28%  Similarity=0.392  Sum_probs=13.7

Q ss_pred             ccccccEEecccccCcccCcccccCCCCCE
Q 045968          258 VFRNLHRVTMVLCHKLKDVTFLVFAPNLKS  287 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~  287 (402)
                      .+++|++|++++| .+++++.+..+++|++
T Consensus       170 ~l~~L~~L~ls~N-~i~~i~~l~~L~~L~~  198 (199)
T d2omxa2         170 NLTTLERLDISSN-KVSDISVLAKLTNLES  198 (199)
T ss_dssp             TCTTCCEEECCSS-CCCCCGGGGGCTTCSE
T ss_pred             CCCCCCEEECCCC-CCCCCccccCCCCCCc
Confidence            3444555555444 3444444444444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.4e-15  Score=130.80  Aligned_cols=166  Identities=27%  Similarity=0.265  Sum_probs=134.8

Q ss_pred             EEEeCCccccCCCccCCccceEEEccCCcccccCC--CCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcc
Q 045968           24 LVRAGAGLKEAPDVKGWENVRRLSLMQNQIETVSE--VPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQG  101 (402)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  101 (402)
                      +...+.++..+|.-- .++++.|++++|.++.++.  ...+++|++|++++| .+..++.  +..+++|++|++++|  .
T Consensus        15 v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~--~~~l~~L~~L~Ls~N--~   88 (266)
T d1p9ag_          15 VNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHN--Q   88 (266)
T ss_dssp             EECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSS--C
T ss_pred             EEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc--ccccccccccccccc--c
Confidence            455667788887422 2589999999999998864  378999999999999 8888875  678999999999999  8


Q ss_pred             ccccccccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccC
Q 045968          102 RLKLPVGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEA  180 (402)
Q Consensus       102 i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  180 (402)
                      ++..+..+..+. +|++|+++++.+..++.. +..+.++++|++.+ +.++.++...+..+++|+++++.+|.+...   
T Consensus        89 l~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~---  163 (266)
T d1p9ag_          89 LQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTEL---  163 (266)
T ss_dssp             CSSCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCC---
T ss_pred             cccccccccccc-ccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhccccccccccc---
Confidence            988888888888 999999999988877554 67889999999999 688888887788999999999999988532   


Q ss_pred             CCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968          181 PEDSVLFGGGEVLIQELLGLKYLEVLELSLGS  212 (402)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  212 (402)
                                  ....+..+++|+.|+++++.
T Consensus       164 ------------~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         164 ------------PAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             ------------CTTTTTTCTTCCEEECCSSC
T ss_pred             ------------CccccccccccceeecccCC
Confidence                        22335567777777776543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=3.6e-14  Score=121.97  Aligned_cols=150  Identities=23%  Similarity=0.309  Sum_probs=99.7

Q ss_pred             CccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEE
Q 045968           40 WENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELL  119 (402)
Q Consensus        40 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L  119 (402)
                      +.+++.|++.++.+..++....+++|++|++++| .+.++++  +..+++|++|++++|  .++.++ .+..+. +|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n-~i~~l~~--~~~l~~L~~L~l~~n--~i~~l~-~l~~l~-~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN--KVKDLS-SLKDLK-KLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS--CCCCGG-GGTTCT-TCCEE
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCc-cccCccc--cccCccccccccccc--cccccc-cccccc-ccccc
Confidence            4567777777777777666667777777777776 6666654  567777777777777  676665 355566 77777


Q ss_pred             EecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhc
Q 045968          120 DISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLG  199 (402)
Q Consensus       120 ~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (402)
                      ++++|.+..++ .+..+++|+.+++.+ +.++..+.  +.++++|+++++.++.+..                 +..+..
T Consensus       118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~-n~l~~~~~--~~~l~~L~~l~l~~n~l~~-----------------i~~l~~  176 (210)
T d1h6ta2         118 SLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQISD-----------------IVPLAG  176 (210)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCCC-----------------CGGGTT
T ss_pred             ccccccccccc-ccccccccccccccc-cccccccc--ccccccccccccccccccc-----------------cccccC
Confidence            77777666553 466677777777766 45555543  5667777777777766531                 223556


Q ss_pred             CCCCceEEEEecCchhhH
Q 045968          200 LKYLEVLELSLGSYHALQ  217 (402)
Q Consensus       200 l~~L~~L~l~~~~~~~~~  217 (402)
                      +++|+.|+++++....++
T Consensus       177 l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         177 LTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             CTTCCEEECCSSCCCBCG
T ss_pred             CCCCCEEECCCCCCCCCh
Confidence            677777777776666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=3.2e-14  Score=121.19  Aligned_cols=154  Identities=22%  Similarity=0.268  Sum_probs=116.5

Q ss_pred             cCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccccc
Q 045968           38 KGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLE  117 (402)
Q Consensus        38 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~  117 (402)
                      ..+.+++.|++.++.+.+++....+++|++|++++| .+.++++  ++++++|++|++++|  .+..++. +..+. +|+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N-~l~~~~~--l~~l~~L~~L~l~~n--~~~~~~~-l~~l~-~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNN--QIADITP-LANLT-NLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS--CCCCCGG-GTTCT-TCS
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccc-cccCccc--ccCCccccccccccc--ccccccc-ccccc-ccc
Confidence            345678888888888888877788888888888887 7777665  788888888888888  6776653 66677 888


Q ss_pred             EEEecCCCCccccHhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhh
Q 045968          118 LLDISCTGITELPEELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQEL  197 (402)
Q Consensus       118 ~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (402)
                      +|+++++....++ .+..+++|+.|++++ +.+..++.  +..+++|++|++.+|.+..                 +..+
T Consensus       110 ~L~l~~~~~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~--l~~~~~L~~L~l~~n~l~~-----------------l~~l  168 (199)
T d2omxa2         110 GLTLFNNQITDID-PLKNLTNLNRLELSS-NTISDISA--LSGLTSLQQLNFSSNQVTD-----------------LKPL  168 (199)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCSEEECCSSCCCC-----------------CGGG
T ss_pred             ccccccccccccc-ccchhhhhHHhhhhh-hhhccccc--ccccccccccccccccccC-----------------Cccc
Confidence            8888888776653 467788888888888 46666654  7788888888888877642                 2346


Q ss_pred             hcCCCCceEEEEecCchhhHhh
Q 045968          198 LGLKYLEVLELSLGSYHALQIL  219 (402)
Q Consensus       198 ~~l~~L~~L~l~~~~~~~~~~~  219 (402)
                      .++++|+.|+++++....++.+
T Consensus       169 ~~l~~L~~L~ls~N~i~~i~~l  190 (199)
T d2omxa2         169 ANLTTLERLDISSNKVSDISVL  190 (199)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGG
T ss_pred             cCCCCCCEEECCCCCCCCCccc
Confidence            7788888888888877766543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.6e-14  Score=125.00  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             ccccccEEecccccCccc--CcccccCCCCCEEeecCC
Q 045968          258 VFRNLHRVTMVLCHKLKD--VTFLVFAPNLKSLDLDGC  293 (402)
Q Consensus       258 ~~~~L~~L~l~~~~~l~~--l~~~~~l~~L~~L~l~~c  293 (402)
                      .+++|++|++++|..+++  +..++.+|+|+.|++.+|
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            688999999999988876  346778999999999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-13  Score=124.44  Aligned_cols=175  Identities=20%  Similarity=0.248  Sum_probs=142.2

Q ss_pred             CcEEEEeCCccccCCC--ccCCccceEEEccCCcccccCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEcc
Q 045968           21 RNFLVRAGAGLKEAPD--VKGWENVRRLSLMQNQIETVSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMS   96 (402)
Q Consensus        21 ~~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~   96 (402)
                      ...+.++...+..++.  +.++++|++|+++++.+..++..  ..++.++.+.+..+..+..+++..|.++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            4567777778887764  78899999999999999887655  6688999988876667888877779999999999999


Q ss_pred             CCCccccccc-cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeecc
Q 045968           97 NCGQGRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus        97 ~~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  174 (402)
                      +|  .+..++ ..+.... +|+.+++++|.+..+|.. +..+++|+.|++.+ +.++.++..++.++++|+++.+.++.+
T Consensus       114 ~n--~~~~~~~~~~~~~~-~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~l~~L~~l~l~~N~l  189 (284)
T d1ozna_         114 RC--GLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRV  189 (284)
T ss_dssp             TS--CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             Cc--ccccccccccchhc-ccchhhhccccccccChhHhccccchhhccccc-Ccccccchhhhccccccchhhhhhccc
Confidence            99  777664 4555566 999999999999988754 77889999999999 588888877799999999999999988


Q ss_pred             cccccCCCcccccCCcchhhHhhhcCCCCceEEEEecCch
Q 045968          175 DRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGSYH  214 (402)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  214 (402)
                      ..               .....+..+++|+.|+++.+...
T Consensus       190 ~~---------------i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         190 AH---------------VHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CE---------------ECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cc---------------cChhHhhhhhhcccccccccccc
Confidence            53               22345677788888888765443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-13  Score=120.74  Aligned_cols=103  Identities=16%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             ceEeccccccccccchHHhccCCCCCEEEccCCCcccccccc-ccccccccccEEEecCCCCcc-ccH-hhhcCCCCcEE
Q 045968           66 LTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPV-GMSVLGSSLELLDISCTGITE-LPE-ELKKLVNLKCL  142 (402)
Q Consensus        66 ~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~~L~~L~L~~~~l~~-lp~-~i~~l~~L~~L  142 (402)
                      +++..++. .+..+|..+   .+++++|++++|  .++.+|. .|..+. +|++|++++|.+.. ++. .+.++++++++
T Consensus        11 ~~i~c~~~-~l~~iP~~l---~~~l~~L~Ls~n--~i~~l~~~~f~~l~-~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQES-KVTEIPSDL---PRNAIELRFVLT--KLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESC-SCSSCCSCS---CSCCSEEEEESC--CCCEECTTTTTTCT-TCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCC-CCCCcCCCC---CCCCCEEECcCC--cCCccChhHhhccc-hhhhhhhccccccceeeccccccccccccc
Confidence            45555544 566666542   246888888888  7777754 466777 88888888886654 333 36677888888


Q ss_pred             EccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          143 NLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       143 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      .+..++.+..++...+.++++|+++++.++.+.
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccccccchhhhc
Confidence            877766777766655778888888888877664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.48  E-value=5.3e-13  Score=123.08  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=80.2

Q ss_pred             CccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEE
Q 045968           63 PHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCL  142 (402)
Q Consensus        63 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L  142 (402)
                      .++++|+++++ .+..+|+.    .++|++|++++|  .++.+|..+   . +|+.|++++|+++.++..   .++|++|
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~----~~~L~~L~Ls~N--~l~~lp~~~---~-~L~~L~l~~n~l~~l~~l---p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL----PPHLESLVASCN--SLTELPELP---Q-SLKSLLVDNNNLKALSDL---PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC----CTTCSEEECCSS--CCSSCCCCC---T-TCCEEECCSSCCSCCCSC---CTTCCEE
T ss_pred             cCCCEEEeCCC-CCCCCCCC----CCCCCEEECCCC--CCcccccch---h-hhhhhhhhhcccchhhhh---ccccccc
Confidence            46889999988 78888752    578999999999  899998654   3 899999999988877531   2579999


Q ss_pred             EccCCCCccccchhhhhCCCCCcEEEeeeeccccc
Q 045968          143 NLRWTGALIRIPRQLISKFSRLRVLRMFAIGYDRF  177 (402)
Q Consensus       143 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  177 (402)
                      ++++ +.++.+|.  +..+++|++|++.++.....
T Consensus       104 ~L~~-n~l~~lp~--~~~l~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         104 GVSN-NQLEKLPE--LQNSSFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             ECCS-SCCSSCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred             cccc-cccccccc--hhhhccceeecccccccccc
Confidence            9999 57888986  67899999999998877543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-13  Score=119.64  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccc-c-ccccccccccccEEEe
Q 045968           44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLK-L-PVGMSVLGSSLELLDI  121 (402)
Q Consensus        44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~-l-~~~~~~l~~~L~~L~L  121 (402)
                      +.++.++.+++.+|... .+++++|++++| .+..++...|.++++|++|++++|  .+.. + +..|..+. .++++.+
T Consensus        11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n--~~~~~i~~~~f~~l~-~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQN--DVLEVIEADVFSNLP-KLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESC--TTCCEECSSSEESCT-TCCEEEE
T ss_pred             CEEEEeCCCCCCcCCCC-CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccc--cccceeecccccccc-ccccccc
Confidence            34555566666665421 246777777776 666777666777777777777777  5543 3 33455566 7777776


Q ss_pred             cC-CCCccccH-hhhcCCCCcEEEccCCCCccccch
Q 045968          122 SC-TGITELPE-ELKKLVNLKCLNLRWTGALIRIPR  155 (402)
Q Consensus       122 ~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~  155 (402)
                      .. +.+...+. .+..+++|+++++.+ +.++..+.
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~-~~l~~~~~  120 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPD  120 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEES-CCCCSCCC
T ss_pred             cccccccccccccccccccccccccch-hhhccccc
Confidence            55 45554443 356777777777777 35555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-13  Score=111.97  Aligned_cols=129  Identities=22%  Similarity=0.273  Sum_probs=91.6

Q ss_pred             CCccCCccceEEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccc-ccc
Q 045968           35 PDVKGWENVRRLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGM-SVL  112 (402)
Q Consensus        35 ~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~-~~l  112 (402)
                      +.+..+.++|.|++++|.++.++.. ..+++|++|++++| .+..++.  +..+++|++|++++|  .++.++..+ ..+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~--~~~l~~L~~L~ls~N--~i~~l~~~~~~~l   86 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDG--FPLLRRLKTLLVNNN--RICRIGEGLDQAL   86 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECC--CCCCSSCCEEECCSS--CCCEECSCHHHHC
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccCC--cccCcchhhhhcccc--cccCCCccccccc
Confidence            4445556788888888888887665 56788888888887 6777654  777888888888888  777775543 445


Q ss_pred             cccccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccch---hhhhCCCCCcEEEee
Q 045968          113 GSSLELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPR---QLISKFSRLRVLRMF  170 (402)
Q Consensus       113 ~~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~  170 (402)
                      + +|++|++++|.+..++.  .+..+++|++|++.+| .++..+.   .++..+++|++|+..
T Consensus        87 ~-~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          87 P-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             T-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             c-ccccceeccccccccccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCCC
Confidence            5 88888888887776654  4667788888888873 5555542   236677777777633

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=7e-13  Score=103.56  Aligned_cols=97  Identities=21%  Similarity=0.238  Sum_probs=52.8

Q ss_pred             eEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecC
Q 045968           44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISC  123 (402)
Q Consensus        44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~  123 (402)
                      |.|++++|+++.++....+++|++|++++| .+..+|+. +..+++|++|++++|  .++.+| .+..++ +|++|++++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N-~l~~lp~~-~~~l~~L~~L~l~~N--~i~~l~-~~~~l~-~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPA-LAALRCLEVLQASDN--ALENVD-GVANLP-RLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSS--CCCCCG-GGTTCS-SCCEEECCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCC-ccCcchhh-hhhhhcccccccccc--cccccC-cccccc-ccCeEECCC
Confidence            345556665555555555555555655555 55555543 555555555555555  555553 244454 555555555


Q ss_pred             CCCccccH--hhhcCCCCcEEEccC
Q 045968          124 TGITELPE--ELKKLVNLKCLNLRW  146 (402)
Q Consensus       124 ~~l~~lp~--~i~~l~~L~~L~l~~  146 (402)
                      |.+..++.  .+..+++|+.|++++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CccCCCCCchhhcCCCCCCEEECCC
Confidence            55554432  245555555555555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=9.3e-13  Score=102.84  Aligned_cols=102  Identities=21%  Similarity=0.243  Sum_probs=86.5

Q ss_pred             ceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCCcEEEcc
Q 045968           66 LTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNLKCLNLR  145 (402)
Q Consensus        66 ~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~  145 (402)
                      |.|++++| .+..++.  +..+++|++|++++|  .++.+|..++.+. +|++|++++|.+..+| .+..+++|++|+++
T Consensus         1 R~L~Ls~n-~l~~l~~--l~~l~~L~~L~ls~N--~l~~lp~~~~~l~-~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN--RLRALPPALAALR-CLEVLQASDNALENVD-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTS-CCSSCCC--GGGGTTCCEEECCSS--CCCCCCGGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CEEEcCCC-CCCCCcc--cccCCCCCEEECCCC--ccCcchhhhhhhh-cccccccccccccccC-ccccccccCeEECC
Confidence            57889988 7887765  788999999999999  8999988888888 9999999999999886 58889999999999


Q ss_pred             CCCCccccch-hhhhCCCCCcEEEeeeeccc
Q 045968          146 WTGALIRIPR-QLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       146 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  175 (402)
                      + +.++.++. ..+..+++|++|++.++.+.
T Consensus        74 ~-N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          74 N-NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             S-SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             C-CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            8 67777653 34788999999999988775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.5e-13  Score=108.92  Aligned_cols=138  Identities=17%  Similarity=0.169  Sum_probs=106.7

Q ss_pred             ccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHh
Q 045968           53 IETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEE  132 (402)
Q Consensus        53 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~  132 (402)
                      +...+.......+|+|++++| .+..++.. +..+++|++|++++|  .++.++ .+..++ +|++|++++|++..++..
T Consensus         8 i~~~~~~~n~~~lr~L~L~~n-~I~~i~~~-~~~l~~L~~L~Ls~N--~i~~l~-~~~~l~-~L~~L~ls~N~i~~l~~~   81 (162)
T d1a9na_           8 IEQAAQYTNAVRDRELDLRGY-KIPVIENL-GATLDQFDAIDFSDN--EIRKLD-GFPLLR-RLKTLLVNNNRICRIGEG   81 (162)
T ss_dssp             HHTSCEEECTTSCEEEECTTS-CCCSCCCG-GGGTTCCSEEECCSS--CCCEEC-CCCCCS-SCCEEECCSSCCCEECSC
T ss_pred             HhhhHhccCcCcCcEEECCCC-CCCccCcc-ccccccCCEEECCCC--CCCccC-CcccCc-chhhhhcccccccCCCcc
Confidence            344454567778999999998 88888753 678999999999999  898884 477787 999999999999988765


Q ss_pred             -hhcCCCCcEEEccCCCCccccch-hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEE
Q 045968          133 -LKKLVNLKCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELS  209 (402)
Q Consensus       133 -i~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  209 (402)
                       +..+++|++|++.+ +.++.++. ..+..+++|++|++.+|.+...            ...-...+..+|+|+.|+..
T Consensus        82 ~~~~l~~L~~L~L~~-N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~------------~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          82 LDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccccceecc-ccccccccccccccccccchhhcCCCccccc------------cchHHHHHHHCCCcCeeCCC
Confidence             46799999999999 57777653 3478899999999999987532            11112346678888877644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=5.9e-12  Score=106.22  Aligned_cols=126  Identities=19%  Similarity=0.260  Sum_probs=96.6

Q ss_pred             eEEEccCCcccccCCCCCCCccceEecccccccc-ccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEe
Q 045968           44 RRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELE-MIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDI  121 (402)
Q Consensus        44 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L  121 (402)
                      +.++.++++++.+|... .+++++|++++| .+. .++...|..+++|++|++++|  .+..+ +..+..+. +|++|++
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N--~i~~~~~~~~~~~~-~L~~L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAFEGAS-HIQELQL   85 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS--CCCCBCTTTTTTCT-TCCEEEC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccc--cccccccccccccc-ccceeee
Confidence            45777777777776542 267888888888 664 355666788888888888888  77766 45566676 8888888


Q ss_pred             cCCCCccccHh-hhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          122 SCTGITELPEE-LKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       122 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      ++|++..+|.. +.++++|++|+|++ +.++.++.+++.++++|++|++.++.+.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccccccc
Confidence            88888887665 67888888888888 6888888777888888888888877664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=7.3e-11  Score=99.31  Aligned_cols=125  Identities=23%  Similarity=0.221  Sum_probs=103.6

Q ss_pred             cEEEEeCCccccCCCccCCccceEEEccCCcccc-cCCC--CCCCccceEeccccccccccchHHhccCCCCCEEEccCC
Q 045968           22 NFLVRAGAGLKEAPDVKGWENVRRLSLMQNQIET-VSEV--PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNC   98 (402)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~   98 (402)
                      ..+...+.++..+|.-- ..++++|++++|.+.. ++..  ..+++|+.|++++| .+..++...+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeeccc
Confidence            34566777888887522 3689999999999975 3333  67999999999988 777877777999999999999999


Q ss_pred             Cccccccc-cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccc
Q 045968           99 GQGRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIR  152 (402)
Q Consensus        99 ~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~  152 (402)
                        .++.++ ..|..+. +|++|+|++|.+..+|.. +..+++|++|++.++ .+..
T Consensus        89 --~l~~l~~~~F~~l~-~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N-~~~~  140 (192)
T d1w8aa_          89 --KIKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFNC  140 (192)
T ss_dssp             --CCCEECSSSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBCC
T ss_pred             --cccccCHHHHhCCC-cccccccCCccccccCHHHhcCCccccccccccc-cccc
Confidence              999884 5688888 999999999999999776 788999999999994 5543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=1e-11  Score=105.20  Aligned_cols=107  Identities=24%  Similarity=0.239  Sum_probs=58.1

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccccccccccccccEEEecCCCCccccHhhhcCCCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSSLELLDISCTGITELPEELKKLVNL  139 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~L~~L~L~~~~l~~lp~~i~~l~~L  139 (402)
                      ..+++|++|++++| .+..++.  +..+++|++|++++|  .++.++..+..+. +|++|++++|.+..++ .+..+++|
T Consensus        45 ~~L~~L~~L~Ls~n-~I~~i~~--l~~l~~L~~L~Ls~N--~i~~i~~~~~~~~-~L~~L~l~~N~i~~l~-~~~~l~~L  117 (198)
T d1m9la_          45 STLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRN--LIKKIENLDAVAD-TLEELWISYNQIASLS-GIEKLVNL  117 (198)
T ss_dssp             HHTTTCCEEECSEE-EESCCCC--HHHHTTCCEEECCEE--EECSCSSHHHHHH-HCCEEECSEEECCCHH-HHHHHHHS
T ss_pred             hcccccceeECccc-CCCCccc--ccCCccccChhhccc--ccccccccccccc-cccccccccccccccc-cccccccc
Confidence            44556666666655 5555543  555666666666666  5555544333333 5666666666555542 35555566


Q ss_pred             cEEEccCCCCccccch-hhhhCCCCCcEEEeeeecc
Q 045968          140 KCLNLRWTGALIRIPR-QLISKFSRLRVLRMFAIGY  174 (402)
Q Consensus       140 ~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  174 (402)
                      +.|++++ +.++.++. ..+..+++|++|++.+|.+
T Consensus       118 ~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         118 RVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccc-chhccccccccccCCCccceeecCCCcc
Confidence            6666655 34444432 2255566666666655544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=2.2e-12  Score=109.37  Aligned_cols=126  Identities=25%  Similarity=0.264  Sum_probs=102.8

Q ss_pred             CccCCccceEEEccCCcccccCCCCCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccccccccccccc
Q 045968           36 DVKGWENVRRLSLMQNQIETVSEVPTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLPVGMSVLGSS  115 (402)
Q Consensus        36 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~~  115 (402)
                      .+..+.+|++|++++|.++.++....+++|++|++++| .+..++.. +..+++|++|++++|  .++.++ .+..+. +
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N-~i~~i~~~-~~~~~~L~~L~l~~N--~i~~l~-~~~~l~-~  116 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYN--QIASLS-GIEKLV-N  116 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEE-EECSCSSH-HHHHHHCCEEECSEE--ECCCHH-HHHHHH-H
T ss_pred             HHhcccccceeECcccCCCCcccccCCccccChhhccc-cccccccc-ccccccccccccccc--cccccc-cccccc-c
Confidence            36668899999999999999987789999999999999 78888754 556678999999999  888874 367788 9


Q ss_pred             ccEEEecCCCCccccH--hhhcCCCCcEEEccCCCCccccch----------hhhhCCCCCcEEE
Q 045968          116 LELLDISCTGITELPE--ELKKLVNLKCLNLRWTGALIRIPR----------QLISKFSRLRVLR  168 (402)
Q Consensus       116 L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~----------~~l~~l~~L~~L~  168 (402)
                      |++|++++|++..++.  .+..+++|+.|++.+| .+...+.          .++..+++|++|+
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS-HHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCC-ccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999998864  5889999999999995 4433221          1256788888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.8e-10  Score=109.41  Aligned_cols=300  Identities=16%  Similarity=0.129  Sum_probs=151.4

Q ss_pred             cceEEEccCCcccccC--C-CCCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCccccc-----ccccc
Q 045968           42 NVRRLSLMQNQIETVS--E-VPTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLK-----LPVGM  109 (402)
Q Consensus        42 ~l~~L~l~~~~~~~~~--~-~~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~-----l~~~~  109 (402)
                      +|+.|+++++.+.+..  . .+.++++++|.+.+| .+.+..    ...+..+++|++|++++|  .+..     +...+
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N--~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN--ELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC--CCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC--cCChHHHHHHHHHH
Confidence            5677777777766521  1 256677777777777 444322    222567777777777777  5542     11222


Q ss_pred             ccccccccEEEecCCCCcc-----ccHhhhcCCCCcEEEccCCCCccccch-----------------------------
Q 045968          110 SVLGSSLELLDISCTGITE-----LPEELKKLVNLKCLNLRWTGALIRIPR-----------------------------  155 (402)
Q Consensus       110 ~~l~~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~-----------------------------  155 (402)
                      ....++|++|++++|.++.     ++..+..+++|++|++.+| .+...+.                             
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccc-cchhhhhhhhhhcccccccccccccccccccchhhh
Confidence            1111267777777777653     2334556777777777764 3322111                             


Q ss_pred             ----hhhhCCCCCcEEEeeeeccccccc------------CCCcccccCC--c----chhhHhhhcCCCCceEEEEecCc
Q 045968          156 ----QLISKFSRLRVLRMFAIGYDRFHE------------APEDSVLFGG--G----EVLIQELLGLKYLEVLELSLGSY  213 (402)
Q Consensus       156 ----~~l~~l~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~--~----~~~~~~l~~l~~L~~L~l~~~~~  213 (402)
                          ..+.....++.+.+..+.......            ..........  .    ......+...+.++.+.+..+..
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence                012233455555554443321000            0000000000  0    01112233445556666554332


Q ss_pred             hhh---HhhhhhhhhcccceeeEeccc------------------eeeeEeccccccccC----C---CCccccccccEE
Q 045968          214 HAL---QILLSSNKLKSCIRSLCLDGF------------------ELEELKIDYTEIVRK----R---REPFVFRNLHRV  265 (402)
Q Consensus       214 ~~~---~~~~~~~~~~~~L~~L~l~~~------------------~L~~L~i~~~~~~~~----~---~~~~~~~~L~~L  265 (402)
                      ...   ............++.+++++|                  .++.+++.++.....    .   ... ....|+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~-~~~~L~~l  317 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE-PGCQLESL  317 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS-TTCCCCEE
T ss_pred             cccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccc-cccccccc
Confidence            211   112222333446667777665                  455556655433110    0   001 34578888


Q ss_pred             ecccccCcccC--c----ccccCCCCCEEeecCCcchHHHhhcCCCCCCccccCCC-CCCCccceeecCccccccc----
Q 045968          266 TMVLCHKLKDV--T----FLVFAPNLKSLDLDGCDAMEEIISVGKFAETPEMMGHI-SPFENLQRLNLEDLPNLES----  334 (402)
Q Consensus       266 ~l~~~~~l~~l--~----~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~----  334 (402)
                      .+++| .++..  .    .+...++|++|++++|. +.+....       .....+ ...+.|+.|++++|. +.+    
T Consensus       318 ~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~-------~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~  387 (460)
T d1z7xw1         318 WVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVR-------ELCQGLGQPGSVLRVLWLADCD-VSDSSCS  387 (460)
T ss_dssp             ECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHH-------HHHHHHTSTTCCCCEEECTTSC-CCHHHHH
T ss_pred             ccccc-chhhhhhhhcccccccccchhhhheeeec-ccCcccc-------hhhhhhhcccCCCCEEECCCCC-CChHHHH
Confidence            88887 45442  1    23456789999999875 4432110       000112 345679999999984 533    


Q ss_pred             -cccCccCCCCccEEEecCCCCCC
Q 045968          335 -IYWKPLPFTRLKEMAVLGCDQLE  357 (402)
Q Consensus       335 -i~~~~~~~~~L~~L~i~~c~~L~  357 (402)
                       +......+++|++|++++. +++
T Consensus       388 ~l~~~l~~~~~L~~L~Ls~N-~i~  410 (460)
T d1z7xw1         388 SLAATLLANHSLRELDLSNN-CLG  410 (460)
T ss_dssp             HHHHHHHHCCCCCEEECCSS-SCC
T ss_pred             HHHHHHhcCCCCCEEECCCC-cCC
Confidence             2222234689999999875 444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.3e-09  Score=85.70  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=63.9

Q ss_pred             EEEccCCcccccCCC-CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCcccccc-ccccccccccccEEEec
Q 045968           45 RLSLMQNQIETVSEV-PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKL-PVGMSVLGSSLELLDIS  122 (402)
Q Consensus        45 ~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~~L~~L~L~  122 (402)
                      .++..++...+++.. ..+++|++|.+.++..+..++...|.++++|+.|++++|  .++.+ +..|..+. +|++|+|+
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N--~l~~i~~~~f~~l~-~L~~L~Ls   88 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS--GLRFVAPDAFHFTP-RLSRLNLS   88 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS--CCCEECTTGGGSCS-CCCEEECC
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc--ccCCcccccccccc-cccceecc
Confidence            355555555544433 566677777776554566666666777777777777777  67766 44566666 77777777


Q ss_pred             CCCCccccHhhhcCCCCcEEEccC
Q 045968          123 CTGITELPEELKKLVNLKCLNLRW  146 (402)
Q Consensus       123 ~~~l~~lp~~i~~l~~L~~L~l~~  146 (402)
                      +|++..+|..+....+|+.|++.+
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCS
T ss_pred             CCCCcccChhhhccccccccccCC
Confidence            777777766654455677777766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.8e-09  Score=83.11  Aligned_cols=110  Identities=17%  Similarity=0.055  Sum_probs=86.7

Q ss_pred             CCCCccceEeccccccccccchHHhccCCCCCEEEccCCCccccccc-cccccccccccEEEecCCCCccccHh-hhcCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIADGFFQLMPSLKVLKMSNCGQGRLKLP-VGMSVLGSSLELLDISCTGITELPEE-LKKLV  137 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~  137 (402)
                      ..+.....+..+++ .+.+.|.. +..+++|++|++.++. .++.++ ..|..+. +|+.|++++|++..++.. +..++
T Consensus         5 C~c~~~~~l~c~~~-~~~~~p~~-l~~l~~l~~L~l~~n~-~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           5 CCPHGSSGLRCTRD-GALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             SCCSSSSCEECCSS-CCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CCcCCCCeEEecCC-CCccCccc-ccCccccCeeecCCCc-cccccCchhhcccc-ccCcceeeccccCCcccccccccc
Confidence            34455566777766 56666666 7888999999998763 588884 5688888 999999999999988554 88899


Q ss_pred             CCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          138 NLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       138 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      +|++|+|++ +.++.+|.+++. ..+|++|++.++.+.
T Consensus        81 ~L~~L~Ls~-N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSF-NALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCS-SCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cccceeccC-CCCcccChhhhc-cccccccccCCCccc
Confidence            999999999 788999887454 447999999988763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.3e-09  Score=98.95  Aligned_cols=108  Identities=15%  Similarity=0.252  Sum_probs=79.2

Q ss_pred             CccceEeccccccccccc-hHHhccCCCCCEEEccCCCccccc-----cccccccccccccEEEecCCCCcccc-----H
Q 045968           63 PHLLTLFLDFNQELEMIA-DGFFQLMPSLKVLKMSNCGQGRLK-----LPVGMSVLGSSLELLDISCTGITELP-----E  131 (402)
Q Consensus        63 ~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~~L~~L~L~~~~l~~lp-----~  131 (402)
                      ++|+.|+++++ ++.+.. ...++.++++++|++.+|  .++.     ++..+..++ +|++|++++|.+...+     .
T Consensus         2 ~~l~~ld~~~~-~i~~~~~~~l~~~l~~l~~L~L~~~--~i~~~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESS--CCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCCEEEeeCC-cCChHHHHHHHHhCCCCCEEEeCCC--CCCHHHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHH
Confidence            47899999977 776643 444788999999999999  7763     344456677 9999999999886321     1


Q ss_pred             hhh-cCCCCcEEEccCCCCccccch----hhhhCCCCCcEEEeeeeccc
Q 045968          132 ELK-KLVNLKCLNLRWTGALIRIPR----QLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       132 ~i~-~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~  175 (402)
                      .+. ...+|++|++++| .++....    .++..+++|++|++.+|.+.
T Consensus        78 ~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHhcCCCCCCEEECCCC-Cccccccccccchhhccccccccccccccch
Confidence            222 2358999999996 5665332    23678999999999988764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.74  E-value=2.9e-08  Score=90.77  Aligned_cols=135  Identities=16%  Similarity=0.100  Sum_probs=69.9

Q ss_pred             ccCCccceEEEccCCcccc-----c-CCCCCCCccceEecccccc--ccc-cc------hHHhccCCCCCEEEccCCCcc
Q 045968           37 VKGWENVRRLSLMQNQIET-----V-SEVPTCPHLLTLFLDFNQE--LEM-IA------DGFFQLMPSLKVLKMSNCGQG  101 (402)
Q Consensus        37 ~~~~~~l~~L~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~~~--l~~-~~------~~~~~~l~~L~~L~l~~~~~~  101 (402)
                      +....+++.|++++|.+..     + ......++|+.+.+.++..  ... .+      ...+..+++|++|++++|  .
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n--~  104 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN--A  104 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC--C
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc--c
Confidence            3445567777777776543     2 1235667777777765411  110 11      122456677777777777  4


Q ss_pred             ccc-----cccccccccccccEEEecCCCCccc-----cHh---------hhcCCCCcEEEccCCCCccccch----hhh
Q 045968          102 RLK-----LPVGMSVLGSSLELLDISCTGITEL-----PEE---------LKKLVNLKCLNLRWTGALIRIPR----QLI  158 (402)
Q Consensus       102 i~~-----l~~~~~~l~~~L~~L~L~~~~l~~l-----p~~---------i~~l~~L~~L~l~~~~~~~~~~~----~~l  158 (402)
                      +..     +...+.... +|++|++++|.+..-     ...         ....+.|+.+++.+ +.++....    ..+
T Consensus       105 i~~~~~~~l~~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~-n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHHHH
T ss_pred             cccccccchhhhhcccc-cchheecccccccccccccccccccccccccccccCcccceeeccc-ccccccccccccchh
Confidence            442     222233444 777777777655311     000         12445666676666 33332111    124


Q ss_pred             hCCCCCcEEEeeeeccc
Q 045968          159 SKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       159 ~~l~~L~~L~l~~~~~~  175 (402)
                      ...++|++|++..|.+.
T Consensus       183 ~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             HHCTTCCEEECCSSCCC
T ss_pred             hhhhhhccccccccccc
Confidence            55666777776666553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.66  E-value=4.9e-08  Score=89.23  Aligned_cols=218  Identities=14%  Similarity=0.073  Sum_probs=107.4

Q ss_pred             CCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCcccccc-----------ccccccccccccEEEecCC
Q 045968           60 PTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLKL-----------PVGMSVLGSSLELLDISCT  124 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~l-----------~~~~~~l~~~L~~L~L~~~  124 (402)
                      .....++.|++++| .+.+..    ...+...++|+.+++.++  .....           ...+..+. +|++|++++|
T Consensus        28 ~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~l~~~l~~~~-~L~~L~L~~n  103 (344)
T d2ca6a1          28 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI--FTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDN  103 (344)
T ss_dssp             HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC--CTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSC
T ss_pred             hhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCC--cccccccccchHHHHHHHHHhhCC-Cccccccccc
Confidence            34566666666665 443321    112445566667766655  22211           11122334 6667777666


Q ss_pred             CCcc-----ccHhhhcCCCCcEEEccCCCCccccchh-------------hhhCCCCCcEEEeeeecccccccCCCcccc
Q 045968          125 GITE-----LPEELKKLVNLKCLNLRWTGALIRIPRQ-------------LISKFSRLRVLRMFAIGYDRFHEAPEDSVL  186 (402)
Q Consensus       125 ~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~~-------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  186 (402)
                      .+..     +...+...++|++|++.+| .+......             .....+.|+.+.+.++.+....        
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~--------  174 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS--------  174 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG--------
T ss_pred             ccccccccchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeecccccccccc--------
Confidence            5542     2233445666777776664 33211000             0124556666666655443110        


Q ss_pred             cCCcchhhHhhhcCCCCceEEEEecCchhh--H-hhhhhhhhcccceeeEeccc------------------eeeeEecc
Q 045968          187 FGGGEVLIQELLGLKYLEVLELSLGSYHAL--Q-ILLSSNKLKSCIRSLCLDGF------------------ELEELKID  245 (402)
Q Consensus       187 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~-~~~~~~~~~~~L~~L~l~~~------------------~L~~L~i~  245 (402)
                         .......+...+.|+.|.++.+.....  . .+.......++|+.|++++|                  +|++|+++
T Consensus       175 ---~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         175 ---MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             ---HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ---cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence               011122344455566666554433221  1 11222333445566666555                  56666666


Q ss_pred             ccccccC--------CCCccccccccEEecccccCcccC------ccc-ccCCCCCEEeecCCcc
Q 045968          246 YTEIVRK--------RREPFVFRNLHRVTMVLCHKLKDV------TFL-VFAPNLKSLDLDGCDA  295 (402)
Q Consensus       246 ~~~~~~~--------~~~~~~~~~L~~L~l~~~~~l~~l------~~~-~~l~~L~~L~l~~c~~  295 (402)
                      ++.....        +... ..+.|++|+++++ .++.-      ..+ .+++.|++|++++|..
T Consensus       252 ~n~i~~~g~~~l~~~l~~~-~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKL-ENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTC-SSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cCccCchhhHHHHHHhhhc-cCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            5543110        0111 3567888999887 56551      123 2578899999988764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=5e-06  Score=66.83  Aligned_cols=84  Identities=21%  Similarity=0.167  Sum_probs=59.1

Q ss_pred             hHHhccCCCCCEEEccCCCccccccc---cccccccccccEEEecCCCCccccHh-hhcCCCCcEEEccCCCCccccc--
Q 045968           81 DGFFQLMPSLKVLKMSNCGQGRLKLP---VGMSVLGSSLELLDISCTGITELPEE-LKKLVNLKCLNLRWTGALIRIP--  154 (402)
Q Consensus        81 ~~~~~~l~~L~~L~l~~~~~~i~~l~---~~~~~l~~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~--  154 (402)
                      ..++..+++|++|++++|  .++.++   ..+..++ +|++|++++|.+.+++.. .....+|+.|++.++ .+....  
T Consensus        58 ~~~~~~~~~L~~L~Ls~N--~i~~l~~~~~~~~~l~-~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N-pl~~~~~~  133 (162)
T d1koha1          58 RIIEENIPELLSLNLSNN--RLYRLDDMSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGN-SLSDTFRD  133 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSS--CCCCCSGGGTHHHHST-TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS-TTSSSSSS
T ss_pred             HHHHHhCCCCCEeeCCCc--cccCCchhHHHHhhCC-cccccccccCccccchhhhhhhccccceeecCCC-CcCcCccc
Confidence            344677899999999999  888663   3355566 999999999999887652 334457899999884 443221  


Q ss_pred             -----hhhhhCCCCCcEEE
Q 045968          155 -----RQLISKFSRLRVLR  168 (402)
Q Consensus       155 -----~~~l~~l~~L~~L~  168 (402)
                           ..++..+++|+.|+
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence                 12356788888886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.1e-06  Score=69.10  Aligned_cols=65  Identities=23%  Similarity=0.096  Sum_probs=51.5

Q ss_pred             cccccccccEEEecCCCCcccc---HhhhcCCCCcEEEccCCCCccccchhhhhCCCCCcEEEeeeeccc
Q 045968          109 MSVLGSSLELLDISCTGITELP---EELKKLVNLKCLNLRWTGALIRIPRQLISKFSRLRVLRMFAIGYD  175 (402)
Q Consensus       109 ~~~l~~~L~~L~L~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  175 (402)
                      +..++ +|++|++++|+++.++   ..+..+++|+.|++++ +.+++++.-...+..+|++|++.++.+.
T Consensus        61 ~~~~~-~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCT-TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCC-CCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcC
Confidence            34566 9999999999998764   3477899999999999 7888877622345568999999998775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.22  E-value=0.00042  Score=55.38  Aligned_cols=15  Identities=7%  Similarity=0.040  Sum_probs=7.2

Q ss_pred             hccCCCCCEEEccCC
Q 045968           84 FQLMPSLKVLKMSNC   98 (402)
Q Consensus        84 ~~~l~~L~~L~l~~~   98 (402)
                      +...+.|++|++++|
T Consensus        40 L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          40 ACNSKHIEKFSLANT   54 (167)
T ss_dssp             HTTCSCCCEEECTTS
T ss_pred             HhhCCccceeecccc
Confidence            334444555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.77  E-value=0.0013  Score=52.25  Aligned_cols=118  Identities=14%  Similarity=0.039  Sum_probs=76.0

Q ss_pred             hccCCCCCEEEccCCCccccc-----cccccccccccccEEEecCCCCc-----cccHhhhcCCCCcEEEccCCCCcccc
Q 045968           84 FQLMPSLKVLKMSNCGQGRLK-----LPVGMSVLGSSLELLDISCTGIT-----ELPEELKKLVNLKCLNLRWTGALIRI  153 (402)
Q Consensus        84 ~~~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~  153 (402)
                      ..+.+.|++|+++++. .+..     +...+.... +|++|++++|.+.     .+...+...+.|++|++++| .++.-
T Consensus        11 ~~n~~~L~~L~L~~~~-~i~~~~~~~l~~~L~~n~-~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~   87 (167)
T d1pgva_          11 REDDTDLKEVNINNMK-RVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPE   87 (167)
T ss_dssp             HTTCSSCCEEECTTCC-SSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHH
T ss_pred             HhCCCCCcEEEeCCCC-CCCHHHHHHHHHHHhhCC-ccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchH
Confidence            4556889999998752 3442     233445556 8999999999876     23334667789999999996 55542


Q ss_pred             ch----hhhhCCCCCcEEEeeeecccccccCCCcccccCCcchhhHhhhcCCCCceEEEEecC
Q 045968          154 PR----QLISKFSRLRVLRMFAIGYDRFHEAPEDSVLFGGGEVLIQELLGLKYLEVLELSLGS  212 (402)
Q Consensus       154 ~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  212 (402)
                      ..    .++...++|++|++.++.......  .+      .......+..-+.|+.|.+....
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~--~~------~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGN--QV------EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCH--HH------HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccH--HH------HHHHHHHHHhCCCccEeeCcCCC
Confidence            21    236677889999998775532100  00      11234456667888888876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.56  E-value=0.0027  Score=50.29  Aligned_cols=21  Identities=10%  Similarity=-0.062  Sum_probs=10.3

Q ss_pred             hhHhhhcCCCCceEEEEecCc
Q 045968          193 LIQELLGLKYLEVLELSLGSY  213 (402)
Q Consensus       193 ~~~~l~~l~~L~~L~l~~~~~  213 (402)
                      ....+...+.|+.|++.+...
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            444444555555555554433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.41  E-value=0.0027  Score=50.30  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=66.5

Q ss_pred             CCCCccceEeccccccccccc----hHHhccCCCCCEEEccCCCccccc-----cccccccccccccEEEecCCCCc---
Q 045968           60 PTCPHLLTLFLDFNQELEMIA----DGFFQLMPSLKVLKMSNCGQGRLK-----LPVGMSVLGSSLELLDISCTGIT---  127 (402)
Q Consensus        60 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~~L~~L~L~~~~l~---  127 (402)
                      ...+.|++|.+.++..+.+-.    ...+...++|++|++++|  .+..     +...+.... .++.++++++.+.   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n--~l~~~~~~~L~~~l~~~~-~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC--cccHHHHHHHHHHHhhcc-cchhhhhccccccchh
Confidence            456788888887643443311    223567788888888888  5542     223344455 8888888887664   


Q ss_pred             --cccHhhhcCCCCcEEEccCC-CCccc-----cchhhhhCCCCCcEEEeeee
Q 045968          128 --ELPEELKKLVNLKCLNLRWT-GALIR-----IPRQLISKFSRLRVLRMFAI  172 (402)
Q Consensus       128 --~lp~~i~~l~~L~~L~l~~~-~~~~~-----~~~~~l~~l~~L~~L~l~~~  172 (402)
                        .+...+...++|+.++|..+ +.+..     +.. ++...++|++|++..+
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCC
Confidence              23334566778887777543 24433     222 2557788888887654