Citrus Sinensis ID: 045972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MWSCVASNIRILQCCHVYLPRVPISISSFSASLFFRSVALGFMDNRNHFNQSSSSFSSFAQSSKSGGGRGRGHDIKNDGERRRSRGGGGSKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPISF
Secondary Structure (PSIPRED)
ccEEEcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccEEHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccEEEEEEcccccccccccccccccccccccccEEEccccHHHHHHHHHHcccccccccEEEcccccccccEEEcccccccEEEEEEHHHHHHcccEEEEEcccEEEccccccccccccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccEEEEEEEEEcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHccccccccccEcHHHHHHHHHHcccccccccccHHHHHHHHHHccccEEEEccccccEEEEEcccccEEEEccccccccccccccccEEEcccHHHHHHHHHHcccccccccEEEEcccccccccEEEcccccccEEEEEEHHHHHHcccEEEEEcccEEEEccccccccHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mwscvasniriLQCChvylprvpisissfsaSLFFRSVALGfmdnrnhfnqssssfssfaqssksgggrgrghdikndgerrrsrggggskdKIDALGRLLTRILRHMASELNlnmrsdgfvKVEDLLKLNLKTfaqiplrshtVDDIWEAVRKDNKQRFSLLEENGELLIRanqghtittvesesllkpilsaeevSVCVHGTYKRNLDSILESGLKRMKRLHVHfscglptdgevisgmrRDVNVLIFLNVRKALADGMKlyisdnkvvltegfdgvvpveyfekieswpdrrpisf
Flexible Loop (DISEMBL)
MWSCVASNIRILQCCHVYLPRVPISISSFSASLFFRSVALGFMDNRNHFNQSSSSFSSFaqssksgggrgrghdikndgerrrsrggggskdkidALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLktfaqiplrshtVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYfekieswpdrrpisf
Low Complexity Region (SEG)
MWSCVASNIRILQCCHVYLPrvpisissfsaslffrsvalGFMDNRNHFNqssssfssfaqssksgggrgrgHDIKNDGErrrsrggggsKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPISF
Disordered region (IsUnstruct)
*WSCVASNIRILQCCHVYLPRVPISISSFSASLFFRSVALGFMD**************************************************DALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESW********
Disordered Region (DISOPRED)
******SNIRILQCCHVYLPRVPISISSF**********************************************************************LLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRR****
Disordered Region (DISEMBL)
MWSCVASNIRILQCCHVYLPRVPISISSFSASLFFRSVALGFMDNRNHFNQ**********************DIKND************KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPISF
Disordered Region (DISPRO)
MWSCVASNIRILQCCHVYLPRVPISISSFSASLFFRSVALG**************************************************DKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESW********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWSCVASNIRILQCCHVYLPRVPISISSFSASLFFRSVALGFMDNRNHFNQSSSSFSSFAQSSKSGGGRGRGHDIKNDGERRRSRGGGGSKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPISF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q3ZBM7	254	tRNA 2'-phosphotransferas	yes	no	0.709	0.834	0.384	1e-32
Q5EAR5	225	tRNA 2'-phosphotransferas	yes	no	0.615	0.817	0.404	6e-32
Q8K3A2	249	tRNA 2'-phosphotransferas	yes	no	0.668	0.803	0.383	4e-31
O14045	365	Putative tRNA 2'-phosphot	yes	no	0.612	0.501	0.369	7e-30
Q86TN4	253	tRNA 2'-phosphotransferas	yes	no	0.739	0.873	0.362	7e-29
Q12272	230	tRNA 2'-phosphotransferas	yes	no	0.625	0.813	0.359	6e-19
B2IZ22	181	Probable RNA 2'-phosphotr	yes	no	0.602	0.994	0.321	4e-17
B9JFP7	185	Probable RNA 2'-phosphotr	yes	no	0.571	0.924	0.291	2e-16
Q8XP22	183	Probable RNA 2'-phosphotr	yes	no	0.578	0.945	0.317	8e-16
B5ZQT5	184	Probable RNA 2'-phosphotr	yes	no	0.561	0.913	0.285	1e-14

>sp|Q3ZBM7|TRPT1_BOVIN tRNA 2'-phosphotransferase 1 OS=Bos taurus GN=TRPT1 PE=2 SV=3

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 132/234 (56%), Gaps = 22/234 (9%)

Query: 79  GERRRSRGGGG--------SKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKL 130
           G RR + G  G         +D+   L + L+  LRH A +L L M +DGFV ++ LL+L
Sbjct: 6   GRRRETAGPKGRRAHRPPQDQDRDVQLSKALSYALRHGALKLGLPMGADGFVPLDALLQL 65

Query: 131 NLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGEL--LIRANQGHTITTVESESLL 188
                     RS + +D+   V  + KQRF+L   +     LIRANQGH++   E E  L
Sbjct: 66  PQ-------FRSFSAEDVQRVVDTNVKQRFALQPGDPSTGPLIRANQGHSLQVPELE--L 116

Query: 189 KPILSAEEVSV-CVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNV 247
           +P+ + + + +  VHGT++++  SIL  GL    R H+H + GLP D  VISGMR +  V
Sbjct: 117 EPLETPQALPLMLVHGTFRQHWPSILLKGLSCRGRTHIHLAPGLPGDPGVISGMRPNCEV 176

Query: 248 LIFLNVRKALADGMKLYISDNKVVLTEG-FDGVVPVEYF-EKIESWPDRRPISF 299
            +F+N   ALADG+  + S N V+LT G  DGV+P +YF E ++  P R+P+S 
Sbjct: 177 AVFINGPLALADGIPFFRSTNGVILTPGNADGVLPPKYFKEALQLRPTRKPLSL 230

Catalyzes the last step of tRNA splicing, the transfer of the splice junction 2'-phosphate from ligated tRNA to NAD to produce ADP-ribose 1''-2'' cyclic phosphate.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 6EC: 0

>sp|Q5EAR5|TRPT1_DANRE tRNA 2'-phosphotransferase 1 OS=Danio rerio GN=trpt1 PE=2 SV=2

 Score =  138 bits (347), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/198 (40%), Positives = 121/198 (61%), Gaps = 14/198 (7%)

Query: 97  LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
           L + L+ +LRH AS++ L M SDGFV VE+LL       A    RS +VDD+   V  ++
Sbjct: 25  LSKSLSYVLRHGASKMGLQMNSDGFVFVEELL-------AHQQFRSFSVDDVERVVASND 77

Query: 157 KQRFSLLE--ENGELLIRANQGHTITTVESESLLKPILSAEE--VSVCVHGTYKRNLDSI 212
           KQRF L +  E+  L IRANQGH++   + E  L+ I   ++      VHG+Y ++  SI
Sbjct: 78  KQRFKLCKHPEDDRLQIRANQGHSVQVTDLE--LREISQDDQDYPREAVHGSYMKHWPSI 135

Query: 213 LESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVL 272
              GL RM R H+H + GLP +G VISGMR+  ++ ++++V KA++DG+K + S+N V+L
Sbjct: 136 RSQGLSRMNRTHIHLAPGLPGEGRVISGMRQSCDLAVYIDVTKAMSDGIKFFWSENGVLL 195

Query: 273 TEG-FDGVVPVEYFEKIE 289
           T G   G++   YF + +
Sbjct: 196 TPGDAAGILAPCYFSRAQ 213

Catalyzes the last step of tRNA splicing, the transfer of the splice junction 2'-phosphate from ligated tRNA to NAD to produce ADP-ribose 1''-2'' cyclic phosphate.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q8K3A2|TRPT1_MOUSE tRNA 2'-phosphotransferase 1 OS=Mus musculus GN=Trpt1 PE=2 SV=2

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/214 (38%), Positives = 125/214 (58%), Gaps = 14/214 (6%)

Query: 91  KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWE 150
           +D+   L + L+  LRH A +L L MR+DGFV ++ LL+L           S +++D+  
Sbjct: 20  QDRNVQLSKALSYALRHGALKLGLPMRADGFVPLQALLQLPQ-------FHSFSIEDVQL 72

Query: 151 AVRKDNKQRFSLL--EENGELLIRANQGHTITTVESESLLKPILSAEEVSVC-VHGTYKR 207
            V  + KQRF+L   E +  LLIRANQGH++   E E  L P+ + + + +  VHGT+ +
Sbjct: 73  VVNTNEKQRFTLQPGEPSTGLLIRANQGHSLQVPELE--LTPLETPQALPLTLVHGTFWK 130

Query: 208 NLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISD 267
           +  SIL  GL R  R H+H + GLP D  VISG+R +  V +F++   AL DG+  + S 
Sbjct: 131 HWPSILLKGLSRQGRTHIHLASGLPGDPGVISGIRPNCEVAVFIDGPLALTDGIPFFCSA 190

Query: 268 NKVVLTEG-FDGVVPVEYF-EKIESWPDRRPISF 299
           N V+LT G  +G +  +YF E ++  P R+P+S 
Sbjct: 191 NGVILTPGNAEGFLLPKYFKEALQLRPTRKPLSL 224

Catalyzes the last step of tRNA splicing, the transfer of the splice junction 2'-phosphate from ligated tRNA to NAD to produce ADP-ribose 1''-2'' cyclic phosphate.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|O14045|TPT1_SCHPO Putative tRNA 2'-phosphotransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.12c PE=3 SV=2

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 116/192 (60%), Gaps = 9/192 (4%)

Query: 99  RLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQ 158
           + L+++LRH A    L +R DG+++V+ +LKL          R   ++ +   V+ ++K+
Sbjct: 43  KALSKVLRHTAKANGLQIREDGYIEVDSILKLP-------QFRGMGMELLLSIVKGNDKK 95

Query: 159 RFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLK 218
           RF++ E  G L IRANQGH+I  V+    +  I +A  +   VHGT K     I + GL 
Sbjct: 96  RFTMEEVEGVLYIRANQGHSIKAVQVP--MARIDNASSIPKVVHGTKKELWPVISKQGLS 153

Query: 219 RMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDG 278
           RMKR H+H + GL  D  VISG+R+   + I+++  KA+ DG++ Y S+N V+LTEG +G
Sbjct: 154 RMKRNHIHCATGLYGDPGVISGIRKSCTLYIYIDSAKAMQDGVEFYRSENGVILTEGVNG 213

Query: 279 VVPVEYFEKIES 290
           ++  +YF ++E+
Sbjct: 214 LLSSKYFSRVET 225

Catalyzes the last step of tRNA splicing, the transfer of the splice junction 2'-phosphate from ligated tRNA to NAD to produce ADP-ribose 1''-2'' cyclic phosphate.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q86TN4|TRPT1_HUMAN tRNA 2'-phosphotransferase 1 OS=Homo sapiens GN=TRPT1 PE=1 SV=2

 Score =  127 bits (320), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 130/240 (54%), Gaps = 19/240 (7%)

Query: 65  SGGGRGRGHDIKNDGERRRSRGGGGSKDKIDALGRLLTRILRHMASELNLNMRSDGFVKV 124
           SGGGR      +  G R R       +D+   L + L+  LRH A +L L M +DGFV +
Sbjct: 4   SGGGR-----QEAAGSRGRRAPRPREQDRDVQLSKALSYALRHGALKLGLPMGADGFVPL 58

Query: 125 EDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLL--EENGELLIRANQGHTITTV 182
             LL+L          R  + +D+   V  + KQRF+L   + +  LLIRANQGH++   
Sbjct: 59  GTLLQLPQ-------FRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVP 111

Query: 183 ESESLLKPILSAEEVS-VCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGM 241
           + E  L P+ + + +  + VHGT+ ++  SIL  GL    R H+H + GLP D  +ISGM
Sbjct: 112 KLE--LMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGM 169

Query: 242 RRDVNVLIFLNVRKALADGMKLYISDNKVVLTEG-FDGVVPVEYF-EKIESWPDRRPISF 299
           R    + +F++   ALADG+  + S N V+LT G  DG +  +YF E ++  P R+P+S 
Sbjct: 170 RSHCEIAVFIDGPLALADGIPFFRSANGVILTPGNTDGFLLPKYFKEALQLRPTRKPLSL 229

Catalyzes the last step of tRNA splicing, the transfer of the splice junction 2'-phosphate from ligated tRNA to NAD to produce ADP-ribose 1''-2'' cyclic phosphate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q12272|TPT1_YEAST tRNA 2'-phosphotransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPT1 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 19/206 (9%)

Query: 91  KDKIDA-LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSH--TVDD 147
           KDK D  L + L+ +LRH A +  L + S+G+  +++LL  N        L++H  TVDD
Sbjct: 7   KDKRDVQLSKALSYLLRHTAVKEKLTIDSNGYTPLKELLSHNR-------LKTHKCTVDD 59

Query: 148 IWEAVRKDNKQRFSLLEENG-ELLIRANQGHTITTVE-SESLLKPILSAEEVSV-CVHGT 204
           I   V++++KQRF +      E  I A QGH+I +++ S+ +L PI  A ++    +HGT
Sbjct: 60  IHRIVKENDKQRFHIKTLGADEEWICATQGHSIKSIQPSDEVLVPITEASQLPQELIHGT 119

Query: 205 YKRNLDSILESG-LKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKAL-ADGMK 262
             +++  I+ESG +  M R HVH S G+     VISGMR   NV IF++    L    +K
Sbjct: 120 NLQSVIKIIESGAISPMSRNHVHLSPGMLHAKGVISGMRSSSNVYIFIDCHSPLFFQTLK 179

Query: 263 LYISDNKVVLTEGFDGVVPVEYFEKI 288
           ++ S N V L+      +PVE  +K+
Sbjct: 180 MFRSLNNVYLSSS----IPVELIQKV 201

Catalyzes the last step of tRNA splicing, the transfer of the splice junction 2'-phosphate from ligated tRNA to NAD to produce ADP-ribose 1''-2'' cyclic phosphate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|B2IZ22|KPTA_NOSP7 Probable RNA 2'-phosphotransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=kptA PE=3 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 19/199 (9%)

Query: 90  SKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIW 149
           S  ++  + + L++ LRH    + + +   G+V V++L+    K   + P+   T  ++ 
Sbjct: 2   SDSRLVKISKYLSKYLRHTPDAIGIKLAPGGWVAVDELITACAKN--KFPI---TRQELE 56

Query: 150 EAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNL 209
             V    KQRFS   ++   LIRANQGH+   VE +  L+P++  +E+    HGT  +++
Sbjct: 57  AVVESSEKQRFSF--DSTGTLIRANQGHS---VEVDLQLEPVVPPDEL---YHGTGHKSV 108

Query: 210 DSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNK 269
           DSI+E+GL +M R HVH S  + T   V  G R    V+  ++       G   Y SDN 
Sbjct: 109 DSIMETGLCKMSRHHVHLSKDIATAQTV--GARHGKPVVFAISAAAMHQAGYIFYCSDNG 166

Query: 270 VVLTEGFDGVVPVEYFEKI 288
           V L +     VP EY +KI
Sbjct: 167 VWLVDR----VPPEYLQKI 181

Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP-ribosylase.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B9JFP7|KPTA_AGRRK Probable RNA 2'-phosphotransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=kptA PE=3 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 21/192 (10%)

Query: 97  LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
           + + ++ +LRH   E+ L +  +G+V  EDL K     F        T  D+ E +  + 
Sbjct: 10  ISKFMSYVLRHAPHEVGLTLDPEGWVPFEDLKKAVFTRFDV------TDADVLEVIETNP 63

Query: 157 KQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESG 216
           K+RF+L+ +     IRA QGH+   V+ +  L P   A   S   HGT   +  +I  +G
Sbjct: 64  KKRFTLMGDR----IRAAQGHS---VDVDLALAP---ATPPSQLFHGTTMESWTAIQNAG 113

Query: 217 LKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGF 276
           LK+M+R HVH S    T  ++++  R+ V++++ +   +  ++G   +++DN+V LT+  
Sbjct: 114 LKKMQRHHVHLSADTET-AKIVAARRKGVHIILEVEAARMHSEGHSFFVTDNEVWLTDH- 171

Query: 277 DGVVPVEYFEKI 288
              VP +Y   I
Sbjct: 172 ---VPSQYLSPI 180

Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP-ribosylase.

Agrobacterium radiobacter (strain K84 / ATCC BAA-868) (taxid: 311403)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q8XP22|KPTA_CLOPE Probable RNA 2'-phosphotransferase OS=Clostridium perfringens (strain 13 / Type A) GN=kptA PE=3 SV=1

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 19/192 (9%)

Query: 97  LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
           + + ++ ILRH   E+ L +   G++ V DL++   K++     +  ++DD+   VR+D+
Sbjct: 8   ISKYISLILRHKPEEIGLKLDEHGYLGVLDLIEGLNKSY-----KGFSMDDLERIVREDS 62

Query: 157 KQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESG 216
           K R+S  E+  +  IRANQGH+I        +KP        V  HGT ++ ++SIL++G
Sbjct: 63  KGRYSFNEDKSK--IRANQGHSIKVDLGLEAIKP------PKVLYHGTGRKYIESILKNG 114

Query: 217 LKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGF 276
           L + +R +VH S  + T    I G R    V++ ++      DG+K Y+S N V L +  
Sbjct: 115 LIKKERQYVHLSKDIETAS--IVGKRHGDLVILEVDSESMFKDGIKFYLSKNNVWLCD-- 170

Query: 277 DGVVPVEYFEKI 288
              V VEY ++I
Sbjct: 171 --YVKVEYIKEI 180

Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP-ribosylase.

Clostridium perfringens (strain 13 / Type A) (taxid: 195102)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B5ZQT5|KPTA_RHILW Probable RNA 2'-phosphotransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=kptA PE=3 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 21/189 (11%)

Query: 97  LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
           + + ++ +LRH      L + ++G+V  ++L K     +        +  DI E V  + 
Sbjct: 10  VSKYMSYVLRHAPEAAGLTLDAEGWVSFDELEKALTSKY------DVSRADIIEIVENNP 63

Query: 157 KQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESG 216
           K RF++++      IRANQGH+   V+ +  L P+   E  +   HGT   N  SI   G
Sbjct: 64  KNRFTIVDNR----IRANQGHS---VDVDLALTPV---EPPAALYHGTSSANWHSIEREG 113

Query: 217 LKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGF 276
           LK+M+R HVH S  + T  ++++  R+   +++ ++  +  ++G   ++SDN V L E  
Sbjct: 114 LKKMQRHHVHLSADVET-AKIVATRRKGEYLILRVDAARMFSEGHSFFVSDNGVWLAES- 171

Query: 277 DGVVPVEYF 285
              VPV+Y 
Sbjct: 172 ---VPVQYL 177

Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP-ribosylase.

Rhizobium leguminosarum bv. trifolii (strain WSM2304) (taxid: 395492)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
225454026	297	PREDICTED: tRNA 2'-phosphotransferase 1	0.989	0.996	0.733	1e-110
388506174	293	unknown [Lotus japonicus]	0.866	0.883	0.785	1e-108
388491674	293	unknown [Lotus japonicus]	0.866	0.883	0.789	1e-108
356564321	254	PREDICTED: putative tRNA 2'-phosphotrans	0.842	0.992	0.783	1e-108
225454024	301	PREDICTED: tRNA 2'-phosphotransferase 1	1.0	0.993	0.720	1e-107
449432259	254	PREDICTED: putative tRNA 2'-phosphotrans	0.789	0.929	0.825	1e-106
388516255	289	unknown [Medicago truncatula]	0.802	0.830	0.816	1e-104
357469563	351	tRNA 2'-phosphotransferase [Medicago tru	0.802	0.683	0.812	1e-103
297824579	293	hypothetical protein ARALYDRAFT_483669 [	0.852	0.870	0.749	1e-103
359806719	302	uncharacterized protein LOC100795797 [Gl	0.775	0.768	0.799	1e-102

>gi|225454026|ref|XP_002281096.1| PREDICTED: tRNA 2'-phosphotransferase 1 [Vitis vinifera] gi|296089204|emb|CBI38907.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/300 (73%), Positives = 244/300 (81%), Gaps = 4/300 (1%)

Query: 1   MWSCVASN-IRILQCCHVYLPRVPISISSFSASLFFRSVALGFMDNRNHFNQSSSSFSSF 59
           MW+ V  N IR L+ C+V LP  P++ +  S SL  R  AL  M+N N    SS S  + 
Sbjct: 1   MWASVTGNGIRFLRYCYVCLP--PVTPTPSSLSLLTRFGALVSMEN-NSAKSSSFSAFAH 57

Query: 60  AQSSKSGGGRGRGHDIKNDGERRRSRGGGGSKDKIDALGRLLTRILRHMASELNLNMRSD 119
           +  S   G  G   D +     R   GGG  KDKIDALGRLLTRILRHMASELNLNMRSD
Sbjct: 58  SSRSGGRGRGGTMRDDRERSRGRGGGGGGSGKDKIDALGRLLTRILRHMASELNLNMRSD 117

Query: 120 GFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTI 179
           G+++VEDLLKLN+KTFA IPLRSHT+DDI EAVRKDNKQRFSLLEENGELLIRANQGHT+
Sbjct: 118 GYIRVEDLLKLNMKTFANIPLRSHTIDDIREAVRKDNKQRFSLLEENGELLIRANQGHTV 177

Query: 180 TTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVIS 239
           T VESESLLKPILSAEEV+VCVHG+YKRNL+SILESGLKRMKRLHVHFSCGLP DGEVIS
Sbjct: 178 TIVESESLLKPILSAEEVTVCVHGSYKRNLESILESGLKRMKRLHVHFSCGLPMDGEVIS 237

Query: 240 GMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPISF 299
           GMRRDVN+LIFL+VRKAL DGMKLYISDNKV+LTEGFDGVVPV+YFEKIESWPDR+ I F
Sbjct: 238 GMRRDVNLLIFLDVRKALEDGMKLYISDNKVILTEGFDGVVPVKYFEKIESWPDRQTIPF 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506174|gb|AFK41153.1| unknown [Lotus japonicus]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/266 (78%), Positives = 228/266 (85%), Gaps = 7/266 (2%)

Query: 36  RSVALGFMDNRNHFNQSSSSFSSFAQSSKSGGGRGRGHDIKNDGERRRSRGGGGS--KDK 93
           RS A   MDN N+ N S S  +  A S     GRG+  D++ND ER R RGG G   KDK
Sbjct: 33  RSFASPSMDNNNNANTSYSRATPSASS-----GRGKAFDMRNDRERTRGRGGEGGSGKDK 87

Query: 94  IDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVR 153
           IDALGRLLTRILRHMASELNLN+RSDG+V V DLLKLNLKT A IPLRSHT+DDI EAVR
Sbjct: 88  IDALGRLLTRILRHMASELNLNLRSDGYVNVNDLLKLNLKTLANIPLRSHTIDDIREAVR 147

Query: 154 KDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSIL 213
           KDNKQRFSL+EENGELLIRANQGHTIT VE+ESLLKPILSAEE+SVCVHGTY+RNL+SIL
Sbjct: 148 KDNKQRFSLIEENGELLIRANQGHTITAVETESLLKPILSAEEISVCVHGTYRRNLESIL 207

Query: 214 ESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLT 273
            SGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFL+VRKAL +G+KLYISDNKV+LT
Sbjct: 208 GSGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLDVRKALEEGLKLYISDNKVILT 267

Query: 274 EGFDGVVPVEYFEKIESWPDRRPISF 299
           EGFDGVVP +YFEKIESWP R+PI F
Sbjct: 268 EGFDGVVPPKYFEKIESWPGRQPIPF 293

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491674|gb|AFK33903.1| unknown [Lotus japonicus]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/266 (78%), Positives = 229/266 (86%), Gaps = 7/266 (2%)

Query: 36  RSVALGFMDNRNHFNQSSSSFSSFAQSSKSGGGRGRGHDIKNDGERRRSRGGGGS--KDK 93
           RS A   MDN N+ N S S  +  A S     GRG+  D++ND ER R RGGGG   KDK
Sbjct: 33  RSFASPSMDNNNNANTSYSRATPSASS-----GRGKAFDMRNDRERTRGRGGGGGSGKDK 87

Query: 94  IDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVR 153
           IDALGRLLTRILRHMASELNLN+RSDG+V V DLLKLNLKT A IPLRSHT+DDI EAVR
Sbjct: 88  IDALGRLLTRILRHMASELNLNLRSDGYVNVNDLLKLNLKTLANIPLRSHTIDDIREAVR 147

Query: 154 KDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSIL 213
           KDNKQRFSL+EENGELLIRANQGHTIT VE+ESLLKPILSAEE+SVCVHGTY+RNL+SIL
Sbjct: 148 KDNKQRFSLIEENGELLIRANQGHTITAVETESLLKPILSAEEISVCVHGTYRRNLESIL 207

Query: 214 ESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLT 273
            SGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFL+VRKAL +G+KLYISDNKV+LT
Sbjct: 208 GSGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLDVRKALEEGLKLYISDNKVILT 267

Query: 274 EGFDGVVPVEYFEKIESWPDRRPISF 299
           EGFDGVVP +YFEKIESWP R+PI F
Sbjct: 268 EGFDGVVPPKYFEKIESWPGRQPIPF 293

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564321|ref|XP_003550403.1| PREDICTED: putative tRNA 2'-phosphotransferase-like [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/259 (78%), Positives = 224/259 (86%), Gaps = 7/259 (2%)

Query: 43  MDNRNHFNQSSSSFSSFAQSSKSGGGRGRGHDIKNDGER--RRSRGGGGSKDKIDALGRL 100
           MDN    N  S+ FSS+A +S S G RG+  D++ND ER   R  G G  KDKID+LGRL
Sbjct: 1   MDN----NARSNPFSSYAHASPSTG-RGKAFDMRNDRERTRGRGGGSGSGKDKIDSLGRL 55

Query: 101 LTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRF 160
           LTRILRHMASELNLNMRSDG+VKV DLLKLNLKTFA IPL+ HT+DDI EAVRKDNKQRF
Sbjct: 56  LTRILRHMASELNLNMRSDGYVKVNDLLKLNLKTFANIPLKLHTIDDIREAVRKDNKQRF 115

Query: 161 SLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRM 220
           SLLEENGELLIRANQGHT+  VE+ESLLKPILSAEE  VCVHGTY++NL+SIL SGLKRM
Sbjct: 116 SLLEENGELLIRANQGHTVKAVETESLLKPILSAEEFPVCVHGTYRKNLESILGSGLKRM 175

Query: 221 KRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVV 280
           KRLHVHFSCGLPTDGEVISGMR+DVNVLIFL+VRKAL +GMKLYISDNKV+LTEGFDGVV
Sbjct: 176 KRLHVHFSCGLPTDGEVISGMRQDVNVLIFLDVRKALEEGMKLYISDNKVILTEGFDGVV 235

Query: 281 PVEYFEKIESWPDRRPISF 299
           P +YFEKIESWP R+PI F
Sbjct: 236 PAKYFEKIESWPSRQPIPF 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454024|ref|XP_002274805.1| PREDICTED: tRNA 2'-phosphotransferase 1 [Vitis vinifera] gi|296089203|emb|CBI38906.3| unnamed protein product [Vitis vinifera]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/301 (72%), Positives = 242/301 (80%), Gaps = 2/301 (0%)

Query: 1   MWSCVASN-IRILQCCHVYLPRV-PISISSFSASLFFRSVALGFMDNRNHFNQSSSSFSS 58
           MW+ V  N IRIL+ C+V LP V P   S    SL  R   L  M+N +  + S S+F+ 
Sbjct: 1   MWASVTGNGIRILRYCYVCLPPVTPTPSSLSGLSLLTRFGVLVSMENNSAKSSSFSAFAH 60

Query: 59  FAQSSKSGGGRGRGHDIKNDGERRRSRGGGGSKDKIDALGRLLTRILRHMASELNLNMRS 118
            ++S   G G     D +    R    GG   KDKIDALGRLLTRILRHMASELNLNMRS
Sbjct: 61  SSRSGGRGRGGTMRDDRERSRGRGGGGGGSSGKDKIDALGRLLTRILRHMASELNLNMRS 120

Query: 119 DGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHT 178
           DG+V+V+DLLKLN+KTFA IPLRSHT+DDI EAVRKDNKQRF LLEENGELLIRANQGHT
Sbjct: 121 DGYVRVQDLLKLNMKTFANIPLRSHTIDDIREAVRKDNKQRFGLLEENGELLIRANQGHT 180

Query: 179 ITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVI 238
           +T VESESLLKPILSAEEV+VCVHG+YKRNL+SILESGLK MKRLHVHFSCGLP DGEVI
Sbjct: 181 VTIVESESLLKPILSAEEVTVCVHGSYKRNLESILESGLKHMKRLHVHFSCGLPMDGEVI 240

Query: 239 SGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPIS 298
           SGMRRDVN+LIFL+VRKAL DGMKLYISDNKV+LTEGFDGVVPV+YFEKIESWPDR+ I 
Sbjct: 241 SGMRRDVNLLIFLDVRKALEDGMKLYISDNKVILTEGFDGVVPVKYFEKIESWPDRQTIP 300

Query: 299 F 299
           F
Sbjct: 301 F 301

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432259|ref|XP_004133917.1| PREDICTED: putative tRNA 2'-phosphotransferase-like [Cucumis sativus] gi|449529309|ref|XP_004171642.1| PREDICTED: putative tRNA 2'-phosphotransferase-like [Cucumis sativus]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/240 (82%), Positives = 219/240 (91%), Gaps = 4/240 (1%)

Query: 63  SKSGGGRGRGHDIKND---GERRRSRGGGGSKDKIDALGRLLTRILRHMASELNLNMRSD 119
           SKS GGRGR  D++ND      R   GGG  KDKIDALGRLLTR+LRHMASELNLNMRSD
Sbjct: 16  SKS-GGRGRDLDLRNDRERTRGRGGGGGGSGKDKIDALGRLLTRVLRHMASELNLNMRSD 74

Query: 120 GFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTI 179
           G+VKVEDLLKLNLKTFA IPLRSHT+DDI EAVRKDNKQRFS L+ENGELLIRANQGHT+
Sbjct: 75  GYVKVEDLLKLNLKTFANIPLRSHTIDDIREAVRKDNKQRFSFLDENGELLIRANQGHTV 134

Query: 180 TTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVIS 239
           T VE+ESLLKPILSAEEV VCVHGTYK+NL+SIL+SGLKRMKRLHVHFSCGLPTDGEVIS
Sbjct: 135 TAVETESLLKPILSAEEVPVCVHGTYKKNLESILDSGLKRMKRLHVHFSCGLPTDGEVIS 194

Query: 240 GMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPISF 299
           GMRRDVNVLIFL+V+KAL DGMKLYISDN+V+LTEGFDGVVP++YF+KIESWP+R+P+ F
Sbjct: 195 GMRRDVNVLIFLDVQKALEDGMKLYISDNRVILTEGFDGVVPMKYFQKIESWPNRQPVPF 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516255|gb|AFK46189.1| unknown [Medicago truncatula]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/245 (81%), Positives = 210/245 (85%), Gaps = 5/245 (2%)

Query: 60  AQSSKSGGGRGRGHDIKNDGERRRSRGGGGS-----KDKIDALGRLLTRILRHMASELNL 114
           A  S SG  RGR  D +ND ER R RGGG       KDKIDALGRLLTRILRHMASEL L
Sbjct: 45  ATPSSSGNSRGRAFDTRNDRERTRGRGGGSGPSGSGKDKIDALGRLLTRILRHMASELKL 104

Query: 115 NMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRAN 174
           NMRSDGFV V DLLKLNLKTFA IPLRSHT+DDI EAVRKDNKQ FSL+EENGELLIRAN
Sbjct: 105 NMRSDGFVNVNDLLKLNLKTFANIPLRSHTIDDIREAVRKDNKQHFSLVEENGELLIRAN 164

Query: 175 QGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTD 234
           QGHT T VE+ESLLKPILSAEE  VCVHGTYKRNLDSIL SGLKRMKRLHVHFS GLPTD
Sbjct: 165 QGHTTTAVETESLLKPILSAEEFPVCVHGTYKRNLDSILASGLKRMKRLHVHFSRGLPTD 224

Query: 235 GEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDR 294
           GEVISGMRRDVNVLI+L+VRKAL +GMKLYISDNKV+LTEGFDGVVP +YF KIESWP R
Sbjct: 225 GEVISGMRRDVNVLIYLDVRKALEEGMKLYISDNKVILTEGFDGVVPSKYFRKIESWPGR 284

Query: 295 RPISF 299
           +PI F
Sbjct: 285 QPIPF 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469563|ref|XP_003605066.1| tRNA 2'-phosphotransferase [Medicago truncatula] gi|355506121|gb|AES87263.1| tRNA 2'-phosphotransferase [Medicago truncatula]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/245 (81%), Positives = 210/245 (85%), Gaps = 5/245 (2%)

Query: 60  AQSSKSGGGRGRGHDIKNDGERRRSRGGGGS-----KDKIDALGRLLTRILRHMASELNL 114
           A  S SG  RGR  D +ND ER R RGGG       KDKIDALGRLLTRILRHMASEL L
Sbjct: 45  ATPSSSGNSRGRAFDTRNDRERTRGRGGGSGPSGSGKDKIDALGRLLTRILRHMASELKL 104

Query: 115 NMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRAN 174
           NMRSDGFV V DLLKLNLKTFA IPLRSHT+DDI EAVRKDNKQRFSL+EENGELLIRAN
Sbjct: 105 NMRSDGFVNVNDLLKLNLKTFANIPLRSHTIDDIREAVRKDNKQRFSLVEENGELLIRAN 164

Query: 175 QGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTD 234
           QGHT T VE+ESLLKPILSAEE  VCVHGTYKRNLDSIL SGLKRMKRLHVHFS GLPTD
Sbjct: 165 QGHTTTAVETESLLKPILSAEEFPVCVHGTYKRNLDSILASGLKRMKRLHVHFSRGLPTD 224

Query: 235 GEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDR 294
           GEVISGMRRDVNVLI+L+VRKAL +GMKLYISDNKV+LTEGFDGVVP +YF+KIESWP R
Sbjct: 225 GEVISGMRRDVNVLIYLDVRKALEEGMKLYISDNKVILTEGFDGVVPSKYFQKIESWPGR 284

Query: 295 RPISF 299
           +   F
Sbjct: 285 QVKCF 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824579|ref|XP_002880172.1| hypothetical protein ARALYDRAFT_483669 [Arabidopsis lyrata subsp. lyrata] gi|297326011|gb|EFH56431.1| hypothetical protein ARALYDRAFT_483669 [Arabidopsis lyrata subsp. lyrata]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/259 (74%), Positives = 221/259 (85%), Gaps = 4/259 (1%)

Query: 41  GFMDNRNHFNQSSSSFSSFAQSSKSGGGRGRGHDIKNDGERRRSRGGGGSKDKIDALGRL 100
            FM+  N  +   S+FSSFAQSS+ GGG  R     ND  R + RGGGG KD+IDALGRL
Sbjct: 39  AFMEASNPNSSRKSNFSSFAQSSRRGGGYER----DNDRRRPQGRGGGGGKDRIDALGRL 94

Query: 101 LTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRF 160
           LTRILRHMA+EL LNMR DGFVKVEDLL LNLKT A I L+SHT+D+I EAVR+DNKQRF
Sbjct: 95  LTRILRHMATELRLNMRGDGFVKVEDLLNLNLKTSANIQLKSHTIDEIKEAVRRDNKQRF 154

Query: 161 SLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRM 220
           SL++ENGELLIRANQGH+ITTVESE LLKPILS EEV VCVHGTY++NL+SIL SGLKRM
Sbjct: 155 SLIDENGELLIRANQGHSITTVESEKLLKPILSPEEVPVCVHGTYRKNLESILASGLKRM 214

Query: 221 KRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVV 280
            R+HVHFSCGLPTDGEVISGMRR+VNV+IFL+V+KALADG+  YISDNKV+LTEG DGVV
Sbjct: 215 NRMHVHFSCGLPTDGEVISGMRRNVNVIIFLDVKKALADGIAFYISDNKVILTEGIDGVV 274

Query: 281 PVEYFEKIESWPDRRPISF 299
           PV+YF+KIESWPDR+ I F
Sbjct: 275 PVDYFQKIESWPDRQSIPF 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806719|ref|NP_001241038.1| uncharacterized protein LOC100795797 [Glycine max] gi|255638634|gb|ACU19622.1| unknown [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/234 (79%), Positives = 208/234 (88%), Gaps = 2/234 (0%)

Query: 68  GRGRGHDIKNDGER--RRSRGGGGSKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVE 125
           GRG+  D++ND ER      G G  KDKID+L RLLTRILRHMASELNLNMRSDG+VKV 
Sbjct: 69  GRGKTFDMRNDRERTTGCGGGSGSGKDKIDSLSRLLTRILRHMASELNLNMRSDGYVKVN 128

Query: 126 DLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESE 185
           DLLKLNLKTFA IPLRSHT+D I EAVRKDNKQRFSLLEENGELLIRANQGHT+  VE+E
Sbjct: 129 DLLKLNLKTFANIPLRSHTIDHIREAVRKDNKQRFSLLEENGELLIRANQGHTVKVVETE 188

Query: 186 SLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDV 245
           SLLKPILSA+E  VC+HGTY++NL+SIL SGLKRMKRLHVHFSCGLPTDGEVISGMR+DV
Sbjct: 189 SLLKPILSAKEFPVCLHGTYRKNLESILGSGLKRMKRLHVHFSCGLPTDGEVISGMRQDV 248

Query: 246 NVLIFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPISF 299
           NVLIFL+VRKAL + +KLYISDNKV+LTEGFDGVVP +YFE+IESWP R+PISF
Sbjct: 249 NVLIFLDVRKALEESIKLYISDNKVILTEGFDGVVPPKYFERIESWPSRQPISF 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2050896	289	emb1067 "AT2G45330" [Arabidops	0.698	0.723	0.794	6.7e-88
TAIR|locus:2171661	212	AT5G23600 "AT5G23600" [Arabido	0.695	0.981	0.759	1.2e-83
DICTYBASE|DDB_G0286929	279	DDB_G0286929 "tRNA 2'-phosphot	0.612	0.655	0.404	2e-31
ZFIN|ZDB-GENE-050227-16	225	zgc:113138 "zgc:113138" [Danio	0.615	0.817	0.404	2e-31
UNIPROTKB|F1MMI9	254	TRPT1 "tRNA 2'-phosphotransfer	0.662	0.779	0.401	1e-29
UNIPROTKB|Q3ZBM7	254	TRPT1 "tRNA 2'-phosphotransfer	0.662	0.779	0.401	1e-29
RGD|1310831	248	Trpt1 "tRNA phosphotransferase	0.662	0.798	0.397	1.6e-29
FB|FBgn0053057	212	CG33057 [Drosophila melanogast	0.645	0.910	0.382	3.4e-29
POMBASE|SPAC2C4.12c	365	SPAC2C4.12c "tRNA 2'-phosphotr	0.612	0.501	0.369	7.1e-29
MGI|MGI:1333115	249	Trpt1 "tRNA phosphotransferase	0.662	0.795	0.387	9.1e-29

TAIR|locus:2050896 emb1067 "AT2G45330" [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 166/209 (79%), Positives = 190/209 (90%)

Query:    91 KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWE 150
             KD+IDALGRLLTRILRHMA+EL LNMR DGFVKVEDLL LNLKT A I L+SHT+D+I E
Sbjct:    81 KDRIDALGRLLTRILRHMATELRLNMRGDGFVKVEDLLNLNLKTSANIQLKSHTIDEIRE 140

Query:   151 AVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLD 210
             AVR+DNKQRFSL++ENGELLIRANQGH+ITTVESE LLKPILS EE  VCVHGTY++NL+
Sbjct:   141 AVRRDNKQRFSLIDENGELLIRANQGHSITTVESEKLLKPILSPEEAPVCVHGTYRKNLE 200

Query:   211 SILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKV 270
             SIL SGLKRM R+HVHFSCGLPTDGEVISGMRR+VNV+IFL+++KAL DG+  YISDNKV
Sbjct:   201 SILASGLKRMNRMHVHFSCGLPTDGEVISGMRRNVNVIIFLDIKKALEDGIAFYISDNKV 260

Query:   271 VLTEGFDGVVPVEYFEKIESWPDRRPISF 299
             +LTEG DGV+PV+YF+KIESWPDR+ I F
Sbjct:   261 ILTEGIDGVLPVDYFQKIESWPDRQSIPF 289

GO:0000215 "tRNA 2'-phosphotransferase activity" evidence=ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2171661 AT5G23600 "AT5G23600" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 158/208 (75%), Positives = 186/208 (89%)

Query:    92 DKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEA 151
             D+IDALGR+LTRILRHMA+EL LNMR DGFVKVEDLL LNLKT A I L SHT+D+I EA
Sbjct:     5 DRIDALGRILTRILRHMATELRLNMRGDGFVKVEDLLNLNLKTCANIQLNSHTIDEIREA 64

Query:   152 VRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDS 211
             V +DNK+RFSL++E+GELLIRANQGH+ITTVESE LLKPILS EE  VCVHGTY++NL+S
Sbjct:    65 VTRDNKKRFSLIDEDGELLIRANQGHSITTVESEKLLKPILSPEEAPVCVHGTYRKNLES 124

Query:   212 ILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVV 271
             IL SGLKRM R+HVHFSCGLPTDGEVISG+RR+VNV+IFL+++KAL DG+  YISDNKV+
Sbjct:   125 ILASGLKRMNRMHVHFSCGLPTDGEVISGVRRNVNVIIFLHIKKALEDGIAFYISDNKVI 184

Query:   272 LTEGFDGVVPVEYFEKIESWPDRRPISF 299
             LT+G  GV+PV+YF+KIESWPDR+ I F
Sbjct:   185 LTQGIVGVLPVDYFQKIESWPDRQSIPF 212

GO:0000215 "tRNA 2'-phosphotransferase activity" evidence=ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

DICTYBASE|DDB_G0286929 DDB_G0286929 "tRNA 2'-phosphotransferase 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 80/198 (40%), Positives = 122/198 (61%)

Query:    96 ALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKD 155
             AL + L+ +LRH A +  L + S GF+KV+D+LK NL        ++    +I E V  +
Sbjct:    17 ALSKSLSYVLRHGAEKEGLKIDSQGFIKVDDILKNNL-------FKNTNFKEIQEVVDTN 69

Query:   156 NKQRF--SLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSIL 213
             +K+R+   L + +G   IRANQGHT+  V++  + K I SA++V    HGTY+++L SIL
Sbjct:    70 DKKRYHMELNDSDGCYYIRANQGHTLENVDNVEMTK-ITSADQVGTVFHGTYRKHLQSIL 128

Query:   214 ESGLKRMKRLHVHFSCGLPTDG-EVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVL 272
               GLK+M R H+H  C     G E+ SGMR   N++++++V   L DG+ LY+S N V L
Sbjct:   129 NEGLKKMDRNHIH--CVNKIMGQEITSGMRGSCNMIVYIDVPLLLQDGIDLYLSQNNVAL 186

Query:   273 TEGFD--GVVPVEYFEKI 288
             T+G +  G++P +YF KI
Sbjct:   187 TDGLNNTGILPPKYFIKI 204

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

ZFIN|ZDB-GENE-050227-16 zgc:113138 "zgc:113138" [Danio rerio (taxid:7955)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 80/198 (40%), Positives = 121/198 (61%)

Query:    97 LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
             L + L+ +LRH AS++ L M SDGFV VE+LL       A    RS +VDD+   V  ++
Sbjct:    25 LSKSLSYVLRHGASKMGLQMNSDGFVFVEELL-------AHQQFRSFSVDDVERVVASND 77

Query:   157 KQRFSLLE--ENGELLIRANQGHTITTVESESLLKPILSAEE--VSVCVHGTYKRNLDSI 212
             KQRF L +  E+  L IRANQGH++   + E  L+ I   ++      VHG+Y ++  SI
Sbjct:    78 KQRFKLCKHPEDDRLQIRANQGHSVQVTDLE--LREISQDDQDYPREAVHGSYMKHWPSI 135

Query:   213 LESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVL 272
                GL RM R H+H + GLP +G VISGMR+  ++ ++++V KA++DG+K + S+N V+L
Sbjct:   136 RSQGLSRMNRTHIHLAPGLPGEGRVISGMRQSCDLAVYIDVTKAMSDGIKFFWSENGVLL 195

Query:   273 TEG-FDGVVPVEYFEKIE 289
             T G   G++   YF + +
Sbjct:   196 TPGDAAGILAPCYFSRAQ 213

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000215 "tRNA 2'-phosphotransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|F1MMI9 TRPT1 "tRNA 2'-phosphotransferase 1" [Bos taurus (taxid:9913)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 86/214 (40%), Positives = 127/214 (59%)

Query:    91 KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIP-LRSHTVDDIW 149
             +D+   L + L+  LRH A +L L M +DGFV ++ LL        Q+P  RS + +D+ 
Sbjct:    26 QDRDVQLSKALSYALRHGALKLGLPMGADGFVPLDALL--------QLPQFRSFSAEDVQ 77

Query:   150 EAVRKDNKQRFSLLEENGEL--LIRANQGHTITTVESESLLKPILSAEEVSVC-VHGTYK 206
               V  + KQRF+L   +     LIRANQGH++   E E  L+P+ + + + +  VHGT++
Sbjct:    78 RVVDTNVKQRFALQPGDPSTGPLIRANQGHSLQVPELE--LEPLETPQALPLMLVHGTFR 135

Query:   207 RNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYIS 266
             ++  SIL  GL    R H+H + GLP D  VISGMR +  V +F+N   ALADG+  + S
Sbjct:   136 QHWPSILLKGLSCRGRTHIHLAPGLPGDPGVISGMRPNCEVAVFINGPLALADGIPFFRS 195

Query:   267 DNKVVLTEG-FDGVVPVEYF-EKIESWPDRRPIS 298
              N V+LT G  DGV+P +YF E ++  P R+P+S
Sbjct:   196 TNGVILTPGNADGVLPPKYFKEALQLRPTRKPLS 229

GO:0008665 "2'-phosphotransferase activity" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q3ZBM7 TRPT1 "tRNA 2'-phosphotransferase 1" [Bos taurus (taxid:9913)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 86/214 (40%), Positives = 127/214 (59%)

Query:    91 KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIP-LRSHTVDDIW 149
             +D+   L + L+  LRH A +L L M +DGFV ++ LL        Q+P  RS + +D+ 
Sbjct:    26 QDRDVQLSKALSYALRHGALKLGLPMGADGFVPLDALL--------QLPQFRSFSAEDVQ 77

Query:   150 EAVRKDNKQRFSLLEENGEL--LIRANQGHTITTVESESLLKPILSAEEVSVC-VHGTYK 206
               V  + KQRF+L   +     LIRANQGH++   E E  L+P+ + + + +  VHGT++
Sbjct:    78 RVVDTNVKQRFALQPGDPSTGPLIRANQGHSLQVPELE--LEPLETPQALPLMLVHGTFR 135

Query:   207 RNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYIS 266
             ++  SIL  GL    R H+H + GLP D  VISGMR +  V +F+N   ALADG+  + S
Sbjct:   136 QHWPSILLKGLSCRGRTHIHLAPGLPGDPGVISGMRPNCEVAVFINGPLALADGIPFFRS 195

Query:   267 DNKVVLTEG-FDGVVPVEYF-EKIESWPDRRPIS 298
              N V+LT G  DGV+P +YF E ++  P R+P+S
Sbjct:   196 TNGVILTPGNADGVLPPKYFKEALQLRPTRKPLS 229

GO:0000215 "tRNA 2'-phosphotransferase activity" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

RGD|1310831 Trpt1 "tRNA phosphotransferase 1" [Rattus norvegicus (taxid:10116)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 85/214 (39%), Positives = 126/214 (58%)

Query:    91 KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIP-LRSHTVDDIW 149
             +D+   L + L+  LRH A +L L MR+DGFV ++ LL        Q+P   S +++D+ 
Sbjct:    20 QDRNVQLSKALSYALRHGALKLGLPMRADGFVPLQALL--------QLPQFHSFSIEDVQ 71

Query:   150 EAVRKDNKQRFSLL--EENGELLIRANQGHTITTVESESLLKPILSAEEV-SVCVHGTYK 206
               V  + KQRF+L   E +   LIRANQGH++   E E  L P+ + + + S  VHGT+ 
Sbjct:    72 LVVDTNEKQRFTLQPGEPSTGPLIRANQGHSLQVPELE--LMPLETPQALPSTLVHGTFW 129

Query:   207 RNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYIS 266
             ++  SIL +GL R  R H+H + GLP D  VISG+R +  V +F+N   AL DG+  + S
Sbjct:   130 KHWPSILLNGLSRQGRTHIHLASGLPGDSGVISGIRPNCEVAVFINGALALTDGIPFFCS 189

Query:   267 DNKVVLTEG-FDGVVPVEYF-EKIESWPDRRPIS 298
              N V+LT G  DG +  +YF E ++  P R+P+S
Sbjct:   190 VNGVILTPGNADGFLLPKYFKEALQLRPTRKPLS 223

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA;ISO

GO:0008665 "2'-phosphotransferase activity" evidence=IEA;ISO

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=ISO

FB|FBgn0053057 CG33057 [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 78/204 (38%), Positives = 113/204 (55%)

Query:    97 LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
             L + L+ +LRH A    + +R+DGFV V DL K              T++ + E    D 
Sbjct:    11 LSKKLSWLLRHGAKTEGITIRADGFVSVPDLQK-------HPRYLCFTLEKLKEIAAADA 63

Query:   157 KQRFSLL--EENGELLIRANQGHTITTVESESL-LKPILSAEEVSVCVHGTYKRNLDSIL 213
             KQR++L    E G   IRANQGH++  +E E+  L+ I    +V + VHGTY R+  +I 
Sbjct:    64 KQRYTLRWNPELGVHEIRANQGHSLAVLEGEAGGLENITHVSQVPLAVHGTYYRHWGAIR 123

Query:   214 ESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLT 273
               GL RM R HVHF+C   T+   +SG R D  +LI+LNV K LADG+ +Y S N V+L 
Sbjct:   124 SQGLSRMNRNHVHFACSDETNS-TLSGFRSDCQILIYLNVEKVLADGIPIYRSSNNVLLC 182

Query:   274 EGFDGVVPVEYFEKIESWPDRRPI 297
              G +G +   YF+++      +P+
Sbjct:   183 PGIEGFIHSSYFQRVVDKKTGQPL 206

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISS

GO:0008665 "2'-phosphotransferase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

POMBASE|SPAC2C4.12c SPAC2C4.12c "tRNA 2'-phosphotransferase Tpt1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 71/192 (36%), Positives = 116/192 (60%)

Query:    99 RLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQ 158
             + L+++LRH A    L +R DG+++V+ +LKL          R   ++ +   V+ ++K+
Sbjct:    43 KALSKVLRHTAKANGLQIREDGYIEVDSILKLP-------QFRGMGMELLLSIVKGNDKK 95

Query:   159 RFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLK 218
             RF++ E  G L IRANQGH+I  V+    +  I +A  +   VHGT K     I + GL 
Sbjct:    96 RFTMEEVEGVLYIRANQGHSIKAVQVP--MARIDNASSIPKVVHGTKKELWPVISKQGLS 153

Query:   219 RMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTEGFDG 278
             RMKR H+H + GL  D  VISG+R+   + I+++  KA+ DG++ Y S+N V+LTEG +G
Sbjct:   154 RMKRNHIHCATGLYGDPGVISGIRKSCTLYIYIDSAKAMQDGVEFYRSENGVILTEGVNG 213

Query:   279 VVPVEYFEKIES 290
             ++  +YF ++E+
Sbjct:   214 LLSSKYFSRVET 225

GO:0000215 "tRNA 2'-phosphotransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISS

MGI|MGI:1333115 Trpt1 "tRNA phosphotransferase 1" [Mus musculus (taxid:10090)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 83/214 (38%), Positives = 126/214 (58%)

Query:    91 KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIP-LRSHTVDDIW 149
             +D+   L + L+  LRH A +L L MR+DGFV ++ LL        Q+P   S +++D+ 
Sbjct:    20 QDRNVQLSKALSYALRHGALKLGLPMRADGFVPLQALL--------QLPQFHSFSIEDVQ 71

Query:   150 EAVRKDNKQRFSLL--EENGELLIRANQGHTITTVESESLLKPILSAEEVSVC-VHGTYK 206
               V  + KQRF+L   E +  LLIRANQGH++   E E  L P+ + + + +  VHGT+ 
Sbjct:    72 LVVNTNEKQRFTLQPGEPSTGLLIRANQGHSLQVPELE--LTPLETPQALPLTLVHGTFW 129

Query:   207 RNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYIS 266
             ++  SIL  GL R  R H+H + GLP D  VISG+R +  V +F++   AL DG+  + S
Sbjct:   130 KHWPSILLKGLSRQGRTHIHLASGLPGDPGVISGIRPNCEVAVFIDGPLALTDGIPFFCS 189

Query:   267 DNKVVLTEG-FDGVVPVEYF-EKIESWPDRRPIS 298
              N V+LT G  +G +  +YF E ++  P R+P+S
Sbjct:   190 ANGVILTPGNAEGFLLPKYFKEALQLRPTRKPLS 223

GO:0000215 "tRNA 2'-phosphotransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IDA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008665 "2'-phosphotransferase activity" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.160	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
pfam01885	169	pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, T	1e-60
PTZ00315	582	PTZ00315, PTZ00315, 2'-phosphotransferase; Provisi	9e-43
COG1859	211	COG1859, KptA, RNA:NAD 2'-phosphotransferase [Tran	6e-36
PRK00819	179	PRK00819, PRK00819, RNA 2'-phosphotransferase; Rev	9e-33

>gnl|CDD|216763 pfam01885, PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA family

 Score =  190 bits (484), Expect = 1e-60
 Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 16/179 (8%)

Query: 97  LGRLLTRILRHMASELNLNMRSDGFVKVEDLLK-LNLKTFAQIPLRSHTVDDIWEAVRKD 155
           L + L+ +LRH   +  L +  DG+V V++LLK L  K       R  T +D+   V  +
Sbjct: 4   LSKFLSYLLRHAPEKEGLTLDEDGWVDVDELLKALRKKG------RWVTREDLERVVATN 57

Query: 156 NKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILES 215
           +K+RF L E      IRANQGH+I TV+    L+         V  HGT +R L SILE 
Sbjct: 58  DKKRFELSE--DGDRIRANQGHSIKTVD----LELE-EEGPPPVLYHGTSERALPSILEE 110

Query: 216 GLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTE 274
           GLK M R HVH S     +  VI GMR    V+++++  KAL DG+K Y S+N V LT+
Sbjct: 111 GLKPMNRNHVHLSTD--RETAVIVGMRHGAPVVLYIDAEKALEDGIKFYRSENGVWLTD 167

Tpt1 catalyzes the last step of tRNA splicing in yeast. It transfers the splice junction 2'-phosphate from ligated tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. This is presumed to be followed by a transesterification step to release the RNA. The first step of this reaction is similar to that catalyzed by some bacterial toxins. E. coli KptA and mouse Tpt1 are likely to use the same reaction mechanism. Length = 169

>gnl|CDD|240356 PTZ00315, PTZ00315, 2'-phosphotransferase; Provisional

 Score =  154 bits (390), Expect = 9e-43
 Identities = 84/213 (39%), Positives = 124/213 (58%), Gaps = 19/213 (8%)

Query: 90  SKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSH--TVDD 147
            ++K+    + ++R+LRH A +  + + S+G+V ++D+L+       Q P+R+   +V D
Sbjct: 374 DEEKLVTYSKFMSRLLRHKADQWRVPITSNGYVLLDDILR-------QPPMRNDPVSVQD 426

Query: 148 IWEAVRKDNKQRFSLL--EENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTY 205
           +   VR  +KQRF L     +G L IRANQGH+I  VE E  L+ + S EEV V VHGTY
Sbjct: 427 VARVVRDSDKQRFKLAYGAADGRLYIRANQGHSIDGVEPE--LRTLTSVEEVPVAVHGTY 484

Query: 206 KRNLDSILESG-LKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVRKALADGMKLY 264
                +I   G L  M R H+HF+ GL  D +VISGMR +V + ++L+V   LADG+ LY
Sbjct: 485 WSAWKAIQRCGYLSTMTRQHIHFAKGLINDEQVISGMRNNVQLFLYLDVAAVLADGVALY 544

Query: 265 ISDNKVVLTEGFDGV--VPVEYFEKIESWPDRR 295
            S N V+LT G      +P++Y  K+    DR 
Sbjct: 545 ESSNGVILTPGVGHTRQLPLKYVAKV---VDRS 574

Length = 582

>gnl|CDD|224772 COG1859, KptA, RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]

 Score =  127 bits (322), Expect = 6e-36
 Identities = 68/214 (31%), Positives = 98/214 (45%), Gaps = 24/214 (11%)

Query: 79  GERRRSRGGGGSK----DKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKT 134
           G+  +S G  G       +   L + L+ +LRH    + L +  +G+  +++LL+   K 
Sbjct: 13  GKECKSCGKPGKALLNEKERVKLSKFLSGVLRHFPEAIGLRLDEEGWADIDELLEGLRK- 71

Query: 135 FAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHTITTVESESLLKPILSA 194
            A   L   T + +   V  D+K RF L E      IRA  GH+I       +   +  A
Sbjct: 72  -AGRWL---TRELLLAVVATDDKGRFELKEG----KIRARYGHSI------PVDLRLPEA 117

Query: 195 EEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFLNVR 254
           E  +V  HGT    L SILE GLK MKR HVH S    T  +V         V++ ++  
Sbjct: 118 EPPAVLYHGTSPEFLPSILEEGLKPMKRRHVHLSADYETAKQVGL-RHSGSPVVLEIDAE 176

Query: 255 KALADGMKLYISDNKVVLTEGFDGVVPVEYFEKI 288
               DG K Y S+N V LT+     VP EY +K+
Sbjct: 177 SLREDGYKFYRSENGVYLTD----TVPPEYIKKV 206

Length = 211

>gnl|CDD|179136 PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed

 Score =  118 bits (298), Expect = 9e-33
 Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 25/194 (12%)

Query: 97  LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
           L + L+ +LRH    + L +  +G+V ++ L++   K +  +     T + +   V  D+
Sbjct: 9   LSKFLSGVLRHKPEAIGLTLDEEGWVDIDALIEALAKAYKWV-----TRELLEAVVESDD 63

Query: 157 KQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESG 216
           K RF +        IRA QGH++  V+ +  L+        +V  HGT    LDSILE G
Sbjct: 64  KGRFEI--SGDR--IRARQGHSVD-VDLD--LEE---DTPPAVLYHGTSSEELDSILEEG 113

Query: 217 LKRMKRLHVHFSCGLPTDGE--VISGMRRDVNVLIFLNVRKALADGMKLYISDNKVVLTE 274
           LK MKR +VH S    TD E     G R    V++ ++       G+K Y ++N V LTE
Sbjct: 114 LKPMKRHYVHLS----TDIETAREVGARHGSPVILEVDAECMRKRGIKFYKAENGVWLTE 169

Query: 275 GFDGVVPVEYFEKI 288
                VP EY +++
Sbjct: 170 Y----VPPEYLKEV 179

Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
KOG2278	207	consensus RNA:NAD 2'-phosphotransferase TPT1 [Tran	100.0
PRK00819	179	RNA 2'-phosphotransferase; Reviewed	100.0
PF01885	186	PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA	100.0
PTZ00315	582	2'-phosphotransferase; Provisional	100.0
COG1859	211	KptA RNA:NAD 2'-phosphotransferase [Translation, r	100.0
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	88.36
cd08029	76	LA_like_fungal La-motif domain of fungal proteins	87.96
cd08028	82	LARP_3 La RNA-binding domain of La-related protein	87.25
cd07323	75	LAM LA motif RNA-binding domain. This domain is fo	87.04
cd08036	75	LARP_5 La RNA-binding domain of La-related protein	87.0
cd08033	77	LARP_6 La RNA-binding domain of La-related protein	85.75
cd08031	75	LARP_4_5_like La RNA-binding domain of proteins si	85.04
cd08035	75	LARP_4 La RNA-binding domain of La-related protein	83.34
cd01439	121	TCCD_inducible_PARP_like Poly(ADP-ribose) polymera	81.37

>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-67  Score=462.80  Aligned_cols=203  Identities=63%  Similarity=0.994  Sum_probs=192.6

Q ss_pred             chhhHHHHHHHHHhccCCCcCCceeCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEE
Q 045972           92 DKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLI  171 (299)
Q Consensus        92 ~r~~~LSK~LSylLRH~pek~GL~mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~I  171 (299)
                      +|.++|||+|||||||.|.+++|+|+.||||+|++||++++.+     ..+.|.|||++||..|+||||.|.++.++++|
T Consensus         5 ~~id~lskaLs~iLRHtA~~~~L~m~~dGfvpv~~lL~lnq~r-----~~~~t~ddi~riVk~ndKqRF~l~d~~~el~I   79 (207)
T KOG2278|consen    5 DRIDALSKALSRILRHTATELRLNMRGDGFVPVEDLLNLNQFR-----GANHTIDDIRRIVKRNDKQRFSLIDEAGELLI   79 (207)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccccCCCceEHHHHhccchhc-----ccCCcHHHHHHHHhccccceEEeecCCCcEEE
Confidence            5677999999999999999999999999999999999987532     23578999999999999999999888889999


Q ss_pred             EecCCCcccccccccccccCCCCCCCCeEEEeCchhcHHHHHHhCCCCCCCcceEeccCCCCCCceeeeeeeCCcEEEEE
Q 045972          172 RANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIFL  251 (299)
Q Consensus       172 RA~QGHSi~~v~~~~~L~pi~~~~~~~~LyHGT~~~~~~~I~~~GLk~M~R~hVHLs~~~~~a~~V~SG~R~~~~VlI~I  251 (299)
                      |||||||+++|+.+.+|.||+.|++.|.|+|||++++|++|+++||+||+|+|||||++.++|.+||||||++|+|+|||
T Consensus        80 rAnQGHSik~vq~~~~l~pi~~~s~lP~lVHGT~~k~~~~Il~sGls~m~RnHvHlspGl~~d~gVISGmRss~nvyIfI  159 (207)
T KOG2278|consen   80 RANQGHSIKTVQSEKLLKPILSPSELPVLVHGTYRKNWPSILASGLSRMNRNHVHLSPGLPGDPGVISGMRSSCNVYIFI  159 (207)
T ss_pred             EecCCcceeecchhhhhcccCChhhCchheechhhhhhHHHHHhhcccccCCeeeecCCCCCCcchhhhhhccceEEEEe
Confidence            99999999999888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ehHHHHhCCCeEEEeCCcEEEecCCCccccccceeeccccCCCCCcCC
Q 045972          252 NVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPISF  299 (299)
Q Consensus       252 D~~kA~~dGi~Fy~S~NgViLTeG~~G~IP~~yf~kv~~~~~~~~~~~  299 (299)
                      |.++|++|||+||+|+||||||+|.+|++|++||++++.|++++..+|
T Consensus       160 d~~~al~dgi~fyrS~N~ViLT~g~vgll~~~yfk~~et~~Dees~~~  207 (207)
T KOG2278|consen  160 DIKKALEDGIAFYRSDNGVILTEGIVGLLPVKYFKKIETWPDEESIPF  207 (207)
T ss_pred             cchHHHhhhhHHhhhcCceEeccCccccccHHHhccCCCCcccccCCC
Confidence            999999999999999999999999999999999999999999987765

>PRK00819 RNA 2'-phosphotransferase; Reviewed

Probab=100.00  E-value=2.3e-63  Score=440.16  Aligned_cols=176  Identities=34%  Similarity=0.513  Sum_probs=158.1

Q ss_pred             cchhhHHHHHHHHHhccCCCcCCceeCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceE
Q 045972           91 KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELL  170 (299)
Q Consensus        91 ~~r~~~LSK~LSylLRH~pek~GL~mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~  170 (299)
                      ++++++|||+|||||||+|+++||+||+||||+|+|||++....     ++++|+++|++||++||||||+|+.    .+
T Consensus         3 ~~~~~~lSK~LS~lLRH~p~~~GL~ld~~G~v~v~~Ll~~~~~~-----~~~~t~~~l~~vV~~d~K~Rf~l~~----~~   73 (179)
T PRK00819          3 GKRLEKLSKFLSGVLRHKPEAIGLTLDEEGWVDIDALIEALAKA-----YKWVTRELLEAVVESDDKGRFEISG----DR   73 (179)
T ss_pred             chhHHHHHHHHHHHHCCCHHHcCCccCCCCCEEHHHHHHHHHHc-----cCCCCHHHHHHHHHcCCCcceEecC----ce
Confidence            56789999999999999999999999999999999999986432     4579999999999999999999973    38


Q ss_pred             EEecCCCcccccccccccccCCCCCCCCeEEEeCchhcHHHHHHhCCCCCCCcceEeccCCCCCCceeeeeeeCCcEEEE
Q 045972          171 IRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIF  250 (299)
Q Consensus       171 IRA~QGHSi~~v~~~~~L~pi~~~~~~~~LyHGT~~~~~~~I~~~GLk~M~R~hVHLs~~~~~a~~V~SG~R~~~~VlI~  250 (299)
                      |||+||||++ |+.+  +++.   +.|++|||||+.++|++|+++||+||+|+|||||++.++  ++++|||+++||+|+
T Consensus        74 IRA~qGHSi~-v~~~--~~~~---~~P~~lyHGT~~~~~~~I~~~GL~pm~R~hVHLs~~~~~--a~~~G~R~~~~vil~  145 (179)
T PRK00819         74 IRARQGHSVD-VDLD--LEED---TPPAVLYHGTSSEELDSILEEGLKPMKRHYVHLSTDIET--AREVGARHGSPVILE  145 (179)
T ss_pred             EEeccCcCCc-cccC--CccC---CCCceeEeCCCHHHHHHHHHhCCCccCCCeEEecCCccc--CeEEcccCCCeEEEE
Confidence            9999999997 4443  3332   224499999999999999999999999999999999865  578999999999999


Q ss_pred             EehHHHHhCCCeEEEeCCcEEEecCCCccccccceee
Q 045972          251 LNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEK  287 (299)
Q Consensus       251 ID~~kA~~dGi~Fy~S~NgViLTeG~~G~IP~~yf~k  287 (299)
                      ||+++|+++|++||+|+||||||++    ||++||++
T Consensus       146 Id~~~~~~~Gi~f~~s~n~V~Lt~~----VP~~y~~~  178 (179)
T PRK00819        146 VDAECMRKRGIKFYKAENGVWLTEY----VPPEYLKE  178 (179)
T ss_pred             EeHHHHHhCCCEEEEeCCCEEEeCC----CCHHHccC
Confidence            9999999999999999999999997    99999975

>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate

Probab=100.00  E-value=5.3e-64  Score=446.22  Aligned_cols=183  Identities=48%  Similarity=0.676  Sum_probs=117.0

Q ss_pred             CcchhhHHHHHHHHHhccCCCcCCceeCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEe-ecCCc
Q 045972           90 SKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLL-EENGE  168 (299)
Q Consensus        90 ~~~r~~~LSK~LSylLRH~pek~GL~mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~-~e~g~  168 (299)
                      |++++++|||+|||||||+|+++||+||+||||+|+|||+++..+     +.++|+++|++||++|+||||+|. ++++.
T Consensus         1 ~~~~~~~lSK~Ls~lLRH~p~~~gL~~d~~G~v~v~dLL~~~~~~-----~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~   75 (186)
T PF01885_consen    1 NQKRDVKLSKALSYLLRHGPEKEGLVMDPDGWVSVDDLLRALRFK-----GLWVTEEDIREVVETDDKQRFELRYEDPGG   75 (186)
T ss_dssp             -------HHHHHHHHHHT-TGGGT----TT--EEHHHHHHHHHHT------TT--HHHHHHHHHH-SS--EEEE-----T
T ss_pred             CchhHHHHHHHHHHHhCCChhhcCCccCCCCCEeHHHHHHHHHHc-----CCCCCHHHHHHHHhhCCCCCeeEEcccccC
Confidence            578899999999999999999999999999999999999986542     456999999999999999999999 55567


Q ss_pred             eEEEecCCCcccccccccccccCCC--CCCCCeEEEeCchhcHHHHHHhCCCCCCCcceEeccCCCCCCceeeeeeeCCc
Q 045972          169 LLIRANQGHTITTVESESLLKPILS--AEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVN  246 (299)
Q Consensus       169 ~~IRA~QGHSi~~v~~~~~L~pi~~--~~~~~~LyHGT~~~~~~~I~~~GLk~M~R~hVHLs~~~~~a~~V~SG~R~~~~  246 (299)
                      ++|||+||||++.++. ..|++|+.  ...|++|||||+.++|+.|+++||+||+|+|||||++.+  .++++|||+++|
T Consensus        76 ~~IRA~qGHSi~~v~~-~~L~~i~~~~~~~p~~lyHGT~~~~~~~I~~~GL~~m~R~hVHls~~~~--~a~~sG~R~~~~  152 (186)
T PF01885_consen   76 WRIRANQGHSIPTVDS-LLLEPITLPEEEPPPILYHGTYRKAWPSILEEGLKPMGRNHVHLSTGPE--TAVISGMRRSCP  152 (186)
T ss_dssp             TEEEESS--SS---------------SS---SEEEE--BGGGHHHHHHH-B---SSSSEEEES-HH--HHHHHHTTSSSB
T ss_pred             ceEEECCCCCCccccc-cccccccCcccCCCCEEEEccchhhHHHHHHhCCCCCCCCEEEEeeccC--CceeecCCCCCe
Confidence            8999999999986654 45777653  234679999999999999999999999999999999954  468899999999


Q ss_pred             EEEEEehHHHHhCCCeEEEeCCcEEEecCCCccc
Q 045972          247 VLIFLNVRKALADGMKLYISDNKVVLTEGFDGVV  280 (299)
Q Consensus       247 VlI~ID~~kA~~dGi~Fy~S~NgViLTeG~~G~I  280 (299)
                      |+||||+++|++|||+||+|+||||||+|++|+|
T Consensus       153 V~i~Id~~~a~~~Gi~f~~s~n~V~Lt~G~~G~~  186 (186)
T PF01885_consen  153 VLIYIDAAKALEDGIKFYRSSNGVILTEGNDGVI  186 (186)
T ss_dssp             EEEEEEHHHHHHTT---EE-SSSEEEES------
T ss_pred             EEEEEcHHHHHHCCCeEEEeCCcEEEecccccCC
Confidence            9999999999999999999999999999988875

Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.

>PTZ00315 2'-phosphotransferase; Provisional

Probab=100.00  E-value=1.7e-62  Score=495.39  Aligned_cols=201  Identities=40%  Similarity=0.661  Sum_probs=182.4

Q ss_pred             cchhhHHHHHHHHHhccCCCcCCceeCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEee--cCCc
Q 045972           91 KDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLE--ENGE  168 (299)
Q Consensus        91 ~~r~~~LSK~LSylLRH~pek~GL~mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~--e~g~  168 (299)
                      ++++++|||+|||||||+|+++||+||++|||+|+|||++....     ..++|+++|++||++||||||+|..  +++.
T Consensus       375 ~~~~~~lSK~LS~lLRH~pe~~GL~ld~~Gwv~vd~LL~~~~~~-----~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~  449 (582)
T PTZ00315        375 EEKLVTYSKFMSRLLRHKADQWRVPITSNGYVLLDDILRQPPMR-----NDPVSVQDVARVVRDSDKQRFKLAYGAADGR  449 (582)
T ss_pred             cchHHHHHHHHHHHHcCCHhhcCCCcCCCCCEEHHHHHHHHHhc-----CCCCCHHHHHHHHHcCCCCceEEeccCCCCc
Confidence            56788999999999999999999999999999999999976421     3469999999999999999999983  2445


Q ss_pred             eEEEecCCCcccccccccccccCCCCCCCCeEEEeCchhcHHHHHHhC-CCCCCCcceEeccCCCCCCceeeeeeeCCcE
Q 045972          169 LLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESG-LKRMKRLHVHFSCGLPTDGEVISGMRRDVNV  247 (299)
Q Consensus       169 ~~IRA~QGHSi~~v~~~~~L~pi~~~~~~~~LyHGT~~~~~~~I~~~G-Lk~M~R~hVHLs~~~~~a~~V~SG~R~~~~V  247 (299)
                      ++|||+||||++.|+.  .|.++++++++|+|||||+.++|++|+++| |+||+|+|||||++.+++.+|+||||+++||
T Consensus       450 ~~IRA~QGHSi~~V~~--~l~~~~~~~~~~~lyHGT~~~~~~sI~~~G~L~~M~R~HVHLs~~~~~~~~v~sG~R~~~~V  527 (582)
T PTZ00315        450 LYIRANQGHSIDGVEP--ELRTLTSVEEVPVAVHGTYWSAWKAIQRCGYLSTMTRQHIHFAKGLINDEQVISGMRNNVQL  527 (582)
T ss_pred             eEEEeccCcccccccc--cccccCCCCCCCeEEeCCcHHHHHHHHHcCCccccCCCeEEecCCCCCcCceEeeccCCceE
Confidence            7999999999975553  367777777788999999999999999999 9999999999999999988899999999999


Q ss_pred             EEEEehHHHHhCCCeEEEeCCcEEEecCC--CccccccceeeccccCCCCCcC
Q 045972          248 LIFLNVRKALADGMKLYISDNKVVLTEGF--DGVVPVEYFEKIESWPDRRPIS  298 (299)
Q Consensus       248 lI~ID~~kA~~dGi~Fy~S~NgViLTeG~--~G~IP~~yf~kv~~~~~~~~~~  298 (299)
                      +||||+++|+++||+||+|+||||||+|+  +|.||++||++|++++++.+|.
T Consensus       528 li~IDa~k~~~dGi~fy~S~NgV~LT~G~~~~G~VP~~y~~~v~~r~~~~~~~  580 (582)
T PTZ00315        528 FLYLDVAAVLADGVALYESSNGVILTPGVGHTRQLPLKYVAKVVDRSTGRTIY  580 (582)
T ss_pred             EEEEEHHHHHhCCCeEEEeCCcEEEecCCCCCCccCHHHHHHHHcccCCCccC
Confidence            99999999999999999999999999995  4999999999999999888763

>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.5e-53  Score=380.25  Aligned_cols=178  Identities=37%  Similarity=0.538  Sum_probs=160.4

Q ss_pred             CcchhhHHHHHHHHHhccCCCcCCceeCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCce
Q 045972           90 SKDKIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGEL  169 (299)
Q Consensus        90 ~~~r~~~LSK~LSylLRH~pek~GL~mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~  169 (299)
                      ++.+++++||+|||+|||.|+.+||.||++||+++++|+..+.+.     ++++|.+.|..||++|||+||+|++    .
T Consensus        28 ~~~~~~~~SK~lS~vLRH~p~~~gl~lD~~Gwa~i~~l~~~~~k~-----~~~~~~~~l~~iV~~d~K~Rf~l~~----~   98 (211)
T COG1859          28 NEKERVKLSKFLSGVLRHFPEAIGLRLDEEGWADIDELLEGLRKA-----GRWLTRELLLAVVATDDKGRFELKE----G   98 (211)
T ss_pred             CcchhhhHHHHHHHHHhcChHHcCeeeccccchhHHHHHHHHHhh-----ccCCCHHHHHHHHhcCCCceeEecc----c
Confidence            677889999999999999999999999999999999999987543     5689999999999999999999985    3


Q ss_pred             EEEecCCCcccccccccccccCCCCCCCCeEEEeCchhcHHHHHHhCCCCCCCcceEeccCCCCCCceeeeeee-CCcEE
Q 045972          170 LIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRR-DVNVL  248 (299)
Q Consensus       170 ~IRA~QGHSi~~v~~~~~L~pi~~~~~~~~LyHGT~~~~~~~I~~~GLk~M~R~hVHLs~~~~~a~~V~SG~R~-~~~Vl  248 (299)
                      +|||+||||+++ +.+     ....+.|++|||||+.++|+.|+++||+||.|+|||||++..+|..|  |.|+ ++||+
T Consensus        99 ~IRA~yGHSi~V-~l~-----~~~~~~p~~LyhGTs~~~l~~I~~~Gi~Pm~R~~VHLS~~~~~A~~v--g~rh~~~pVv  170 (211)
T COG1859          99 KIRARYGHSIPV-DLR-----LPEAEPPAVLYHGTSPEFLPSILEEGLKPMKRRHVHLSADYETAKQV--GLRHSGSPVV  170 (211)
T ss_pred             ceeeccCcceEE-ecc-----CCCCCCCcEEEecCChhhhHHHHHhcCccccCceEEecCCHHHHHHH--hhccCCCcEE
Confidence            899999999864 222     22345567999999999999999999999999999999999887665  8788 79999


Q ss_pred             EEEehHHHHhCCCeEEEeCCcEEEecCCCccccccceeec
Q 045972          249 IFLNVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKI  288 (299)
Q Consensus       249 I~ID~~kA~~dGi~Fy~S~NgViLTeG~~G~IP~~yf~kv  288 (299)
                      |+||+++|+++|++||+|+|+||||+    .|||+|++.+
T Consensus       171 L~IDa~~l~~~G~~~~rs~n~V~Lt~----~VPpe~i~~~  206 (211)
T COG1859         171 LEIDAESLREDGYKFYRSENGVYLTD----TVPPEYIKKV  206 (211)
T ss_pred             EEEehHHHHhCCceEEEcCCcEEEee----ecCHHHeeec
Confidence            99999999999999999999999999    5999999974

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=88.36  E-value=0.14  Score=53.33  Aligned_cols=39  Identities=33%  Similarity=0.537  Sum_probs=0.0

Q ss_pred             cCCCCCccccccccCCCCCCCCCcccccCCCCCcccCCCCC
Q 045972           49 FNQSSSSFSSFAQSSKSGGGRGRGHDIKNDGERRRSRGGGG   89 (299)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~rg~~~   89 (299)
                      +++.+.-||+-..++..|+|||+++|+++  +||||||+++
T Consensus       515 y~~p~~k~ss~~~~~~~~~g~gr~rg~~~--ggg~grg~~r  553 (556)
T PF05918_consen  515 YVPPSGKYSSNGGNSGRGRGGGRGRGRRS--GGGRGRGRGR  553 (556)
T ss_dssp             -----------------------------------------
T ss_pred             cCCCCCCCcCCCCCCCCCCCCCCCCCCCC--CCCCCCcccc
Confidence            34445555655555333333433333333  4444555443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen

Probab=87.96  E-value=0.44  Score=37.24  Aligned_cols=46  Identities=17%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             eCCCcceeHHHHHHhhhhcccCCCCCCCC-HHHHHHHHHhCCCCceEEeecCCceEEE
Q 045972          116 MRSDGFVKVEDLLKLNLKTFAQIPLRSHT-VDDIWEAVRKDNKQRFSLLEENGELLIR  172 (299)
Q Consensus       116 mD~dG~V~v~dLL~~~~~~~~~~~~~~vt-~edI~~VV~~ddKqRFel~~e~g~~~IR  172 (299)
                      .|+||||+++.|+..+.-       +.+| .+.|.++++..+  --|+++++  .+||
T Consensus        29 ~~~~G~Vpl~~i~~F~rm-------k~l~~~~~i~~Al~~S~--~lev~~d~--~~VR   75 (76)
T cd08029          29 GSNNGWVPIKTIASFKRM-------RRFQPLEAVVEALRESE--LLEVSEDG--ENVR   75 (76)
T ss_pred             cCCCCcEehHHHhCchHH-------HHcCCHHHHHHHHHhCC--eEEEeCCC--Cccc
Confidence            589999999999986421       2222 377888888775  46776543  3665

This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08028 LARP_3 La RNA-binding domain of La-related protein 3

Probab=87.25  E-value=0.63  Score=36.95  Aligned_cols=50  Identities=28%  Similarity=0.376  Sum_probs=35.8

Q ss_pred             eC-CCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEE
Q 045972          116 MR-SDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIR  172 (299)
Q Consensus       116 mD-~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IR  172 (299)
                      |+ .||||+++.|+..+.-+     --..+.+.|.+++...+..-.|+.+++  .+||
T Consensus        31 m~~~~G~Vpl~~i~~F~rmk-----~l~~d~~~i~~Al~~S~~~~lev~~d~--~~VR   81 (82)
T cd08028          31 IKEDDGWVPMEVMLKFNRLK-----SLSSDPEVIAKALKKSKSGLIEVSEDK--TKIR   81 (82)
T ss_pred             HhccCCCEEhHHHhCChhHH-----HhcCCHHHHHHHHHhCCCCEEEEcCCC--CccC
Confidence            44 38999999999864211     112468999999999987788987643  3665

This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).

>cd07323 LAM LA motif RNA-binding domain

Probab=87.04  E-value=0.66  Score=35.98  Aligned_cols=48  Identities=27%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             eCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEE
Q 045972          116 MRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIR  172 (299)
Q Consensus       116 mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IR  172 (299)
                      |+++|||+++.|++...-.     --..+.++|.++++..+  --|+.++  ..+||
T Consensus        27 ~~~~g~Vpl~~i~~F~r~k-----~l~~~~~~i~~Al~~s~--~lel~~~--~~~Vr   74 (75)
T cd07323          27 MDDDGWVPLSLLASFNRVK-----KLTTDVELILEALRDSS--VVEVSED--GTKVR   74 (75)
T ss_pred             cCCCCCEEHHHHhCchHHH-----HHcCCHHHHHHHHHhCC--eEEEeCC--CCccC
Confidence            4899999999999864211     11356799999999886  3455443  23565

This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08036 LARP_5 La RNA-binding domain of La-related protein 5

Probab=87.00  E-value=0.49  Score=37.16  Aligned_cols=47  Identities=26%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             eCCCcceeHHHHHHhhhhcccCCCCCCC--CHHHHHHHHHhCCCCceEEeecCCceEEEe
Q 045972          116 MRSDGFVKVEDLLKLNLKTFAQIPLRSH--TVDDIWEAVRKDNKQRFSLLEENGELLIRA  173 (299)
Q Consensus       116 mD~dG~V~v~dLL~~~~~~~~~~~~~~v--t~edI~~VV~~ddKqRFel~~e~g~~~IRA  173 (299)
                      ||+||||+++-+...+.       .+.+  +.+.|.+++.+.+  --|++++ | .+||+
T Consensus        27 md~~g~Vpi~~ia~F~r-------ik~Lt~D~~lI~~aL~~S~--~vevse~-g-~kVRp   75 (75)
T cd08036          27 MDSDQYVPIMTVANLDH-------IKKLSTDVDLIVDVLRSLP--LVQVDEK-G-EKVRP   75 (75)
T ss_pred             hccCCCEehHHHhccHH-------HHHhcCCHHHHHHHHhhCC--eEEECCC-C-CccCc
Confidence            78999999999998542       1233  4677888887764  3555543 3 36663

This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08033 LARP_6 La RNA-binding domain of La-related protein 6

Probab=85.75  E-value=0.69  Score=36.31  Aligned_cols=48  Identities=13%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             eCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEE
Q 045972          116 MRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIR  172 (299)
Q Consensus       116 mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IR  172 (299)
                      .|+||||+++-++..+.-.     --..+.+.|.+++...+  =.|+.+++  .+||
T Consensus        29 ~~~dG~Vpl~~i~~F~rmk-----~l~~d~~~I~~Al~~S~--~lev~~d~--~~VR   76 (77)
T cd08033          29 RNKEGYVPIKLIASFKKVK-----ALTRDWRVVAAALRRSS--KLVVSEDG--KKVR   76 (77)
T ss_pred             cCCCCcEehHHHhcchHHH-----HHcCCHHHHHHHHHhCC--eEEEcCCC--CccC
Confidence            4899999999999864211     11247789999998886  25565432  3565

This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5

Probab=85.04  E-value=0.8  Score=35.78  Aligned_cols=48  Identities=27%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             eCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEE
Q 045972          116 MRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIR  172 (299)
Q Consensus       116 mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IR  172 (299)
                      |++||||+++-|+....-.    .+ .-+.+.|.+.+...+.  -|+.+++  .+||
T Consensus        27 m~~dG~Vpl~~i~~F~rmk----~l-t~d~~~i~~Al~~S~~--lev~ed~--~~VR   74 (75)
T cd08031          27 MDSDQYVPIWTIANFNKIK----KL-TTDIDLIVEALRESPN--VQVDEKG--EKVR   74 (75)
T ss_pred             hCCCCCEEHHHHhCchhHH----HH-cCCHHHHHHHHHhCCe--EEEcCCC--CccC
Confidence            6789999999999854211    01 2367888888887752  4555432  3666

This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd08035 LARP_4 La RNA-binding domain of La-related protein 4

Probab=83.34  E-value=0.88  Score=35.70  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             eCCCcceeHHHHHHhhh-hcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEEe
Q 045972          116 MRSDGFVKVEDLLKLNL-KTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRA  173 (299)
Q Consensus       116 mD~dG~V~v~dLL~~~~-~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IRA  173 (299)
                      ||+||||+++-+...+. +.      -.-+.+.|.+++...++  -+++++ | .+||.
T Consensus        27 md~~G~Vpi~~iasF~rik~------lt~d~~~I~~AL~~S~~--levsed-g-~kVRp   75 (75)
T cd08035          27 MDSDQFVPIWTVANMEGIKK------LTTDMDLILDVLRSSPM--VQVDET-G-EKVRP   75 (75)
T ss_pred             hCcCCCEehHHHhccHHHHH------hcCCHHHHHHHHHcCCe--EEEcCC-C-CccCc
Confidence            78999999999887432 11      12367888888888753  566543 3 36763

This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=81.37  E-value=0.83  Score=38.19  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             eEEEeCchhcHHHHHHhCCCCCC-C-------cceEeccCC
Q 045972          199 VCVHGTYKRNLDSILESGLKRMK-R-------LHVHFSCGL  231 (299)
Q Consensus       199 ~LyHGT~~~~~~~I~~~GLk~M~-R-------~hVHLs~~~  231 (299)
                      .|||||..++|+.|.+.|+.++- .       .=|+||...
T Consensus         1 ~LfHGt~~~~~~~I~~~GF~~~~~g~~~~~~G~GiYFA~~~   41 (121)
T cd01439           1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKGSYFAKNA   41 (121)
T ss_pred             CcccccChhhHHHHHHccCCCccCCCCCCccCCeeecccCh
Confidence            37999999999999999987762 1       136677653

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	299
1wfx_A	186	Probable RNA 2'-phosphotransferase; tRNA splicing,	100.0
2cqk_A	101	C-MPL binding protein; LA domain, structural genom	91.54
1s29_A	92	LA protein; winged helix-turn-helix, autoantigen,	87.2
4f0d_A	277	PARP-16, poly [ADP-ribose] polymerase 16; transfer	83.0

>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5

Probab=100.00  E-value=5.3e-64  Score=445.32  Aligned_cols=185  Identities=26%  Similarity=0.374  Sum_probs=161.0

Q ss_pred             hhhHHHHHHHHHhccCCCcCCceeCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEE
Q 045972           93 KIDALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIR  172 (299)
Q Consensus        93 r~~~LSK~LSylLRH~pek~GL~mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IR  172 (299)
                      |+++|||+|||+|||+|+++||+||+||||+|+|||+ +...   .+++++|+++|++||++|+||||+|++    ++||
T Consensus         1 ~~~~lSK~LS~iLRH~p~~~gL~ld~~G~v~v~~LL~-~~~~---~~~~~~t~~~l~~vV~~~~K~Rf~l~~----~~IR   72 (186)
T 1wfx_A            1 MRVRLSKTLAGILRHHPGRYGVRLTREGWARVSEVVE-GLRK---AGWSWVEEWHIVGVALHDPKGRYELRN----GEIR   72 (186)
T ss_dssp             --CCHHHHHHHHHHTCTGGGTCCCCTTCCEEHHHHHH-HHHH---TTCTTCCHHHHHHHHHHCSSCCEEEET----TEEE
T ss_pred             ChhHHHHHHHHHhCCChhhcCCccCCCCCEEHHHHHh-hhhh---cccCCCCHHHHHHHHhcCCCCceEeec----cEEE
Confidence            4678999999999999999999999999999999999 4322   125689999999999999999999984    2899


Q ss_pred             ecCCCcccccccccccccCCCCCCCCeEEEeCchhcHHHHHHhCCCCCCCcceEeccCCCCCCceeeeeeeC-CcEEEEE
Q 045972          173 ANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRD-VNVLIFL  251 (299)
Q Consensus       173 A~QGHSi~~v~~~~~L~pi~~~~~~~~LyHGT~~~~~~~I~~~GLk~M~R~hVHLs~~~~~a~~V~SG~R~~-~~VlI~I  251 (299)
                      |+||||++ |+.+  |++   .+.|++|||||+.++|++|+++||+||+|+|||||++.++  ++++|||++ +||+|+|
T Consensus        73 A~qGHSi~-V~~~--l~~---~~~P~~lyHGT~~~~~~~I~~~GL~~m~R~hVHLs~~~~~--a~~vG~R~~~~~V~i~I  144 (186)
T 1wfx_A           73 ARYGHSIP-VNVE--PLP---GEPPPILYHGTTEEALPLIMERGIMRGRRLKVHLTSSLED--AVSTGRRHGNLVAVLLV  144 (186)
T ss_dssp             ESSCCSSC-CCCC--CCS---SCCCSEEEECCBGGGHHHHHHHCBCCCSSSSEEEESCHHH--HHHHHTTSSSSBEEEEE
T ss_pred             eccCCCCc-cccc--CCc---CCCCCEEEEeCCHHHHHHHHHhCCCCCCCCEEEEecCCCC--CeEeeccCCCccEEEEE
Confidence            99999998 5543  433   2335699999999999999999999999999999999876  477899999 9999999


Q ss_pred             ehHHHHhCCCeEEEeCCcEEEecCCCccccccceeeccccCCCCCc
Q 045972          252 NVRKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIESWPDRRPI  297 (299)
Q Consensus       252 D~~kA~~dGi~Fy~S~NgViLTeG~~G~IP~~yf~kv~~~~~~~~~  297 (299)
                      |+++|++||++||+|+||||||+    .||++||+++++...|..|
T Consensus       145 d~~~a~~~Gi~fy~s~ngV~Lt~----~VP~~y~~~v~~~~~~~~~  186 (186)
T 1wfx_A          145 DVECLRRRGLKVERMSKTVYTVD----WVPPECIAEVRRESLGRSL  186 (186)
T ss_dssp             EHHHHHHTTCCCEECSSSEEEES----CBCGGGEEEEEETTC----
T ss_pred             cHHHHHhCCCEEEEeCCcEEEeC----CcCHHHheeccccCCCCcC
Confidence            99999999999999999999999    5999999999988877654

>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46

Probab=91.54  E-value=0.44  Score=38.05  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=38.1

Q ss_pred             eCCCcceeHHHHHHhhh-hcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEEecCCCc
Q 045972          116 MRSDGFVKVEDLLKLNL-KTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQGHT  178 (299)
Q Consensus       116 mD~dG~V~v~dLL~~~~-~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IRA~QGHS  178 (299)
                      ||+||||+++.|+.... +..      .-+.+.|.++++..+.  .|++++ + .+||-++...
T Consensus        41 md~~G~Vpl~~iasF~r~k~l------t~d~~~i~~al~~S~~--levsed-g-~kVRr~~~~~   94 (101)
T 2cqk_A           41 MDSDQFIPIWTVANMEEIKKL------TTDPDLILEVLRSSPM--VQVDEK-G-EKVRPSHKRC   94 (101)
T ss_dssp             SCTTSCEEHHHHHHCHHHHHH------CCCHHHHHHHHHHSSS--EEECSS-S-SEEEECCSCC
T ss_pred             hhcCCCEEhHHHhCChHHHHH------cCCHHHHHHHHHhCCc--EEEcCC-C-CeeeeCCCCC
Confidence            58999999999998542 211      2477889999998864  677654 3 4899885443

>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46

Probab=87.20  E-value=0.45  Score=37.27  Aligned_cols=49  Identities=33%  Similarity=0.587  Sum_probs=33.8

Q ss_pred             CCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEEec
Q 045972          117 RSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRAN  174 (299)
Q Consensus       117 D~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IRA~  174 (299)
                      |+||||+++.|+....-+     --.-+.+.|.++++..++  .|+.++ | .+||-+
T Consensus        40 ~~~G~Vpl~~i~sF~r~k-----~lt~d~~~i~~al~~S~~--lev~ed-g-~~VRR~   88 (92)
T 1s29_A           40 NAEGFVSLETLLTFKRVN-----SVTTDVKEVVEAIRPSEK--LVLSED-G-LMVRRR   88 (92)
T ss_dssp             STTCCEEHHHHTTSHHHH-----TTCSCHHHHHHHHTTCSS--EEECTT-S-SEEEES
T ss_pred             CCCCCEEhHHHhCChhHH-----HHcCCHHHHHHHHhhCCe--EEEeCC-C-CEEeCC
Confidence            789999999999854211     112357778888887755  677653 3 388866

>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}

Probab=83.00  E-value=1.1  Score=41.61  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=28.7

Q ss_pred             eEEEeCchhcHHHHHHhCCCCC------CCcceEeccCCC
Q 045972          199 VCVHGTYKRNLDSILESGLKRM------KRLHVHFSCGLP  232 (299)
Q Consensus       199 ~LyHGT~~~~~~~I~~~GLk~M------~R~hVHLs~~~~  232 (299)
                      ++|||+..++|-+|+..||.-|      -.+.|.||.+..
T Consensus       147 ~~~HGS~l~n~~sIL~~GL~~~~~~g~~fG~GiY~a~~~~  186 (277)
T 4f0d_A          147 YAFHGSRLENFHSIIHNGLHCHLNKTSLFGEGTYLTSDLS  186 (277)
T ss_dssp             EEEEECCGGGHHHHHHHCSCCC--CCCSSSCCEEEBSCHH
T ss_pred             EEEcCCcHHHHHHHHhcccccCcccccccCCceEeecchH
Confidence            7999999999999999998654      356899988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	299
d1wfxa_	180	d.166.1.5 (A:) Probable RNA 2'-phosphotransferase	1e-50

>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA {Aeropyrum pernix [TaxId: 56636]} Length = 180

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Tpt1/KptA
domain: Probable RNA 2'-phosphotransferase KptA
species: Aeropyrum pernix [TaxId: 56636]

 Score =  163 bits (413), Expect = 1e-50
 Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 21/194 (10%)

Query: 97  LGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDN 156
           L + L  ILRH      + +  +G+ +V ++++   K              I      D 
Sbjct: 3   LSKTLAGILRHHPGRYGVRLTREGWARVSEVVEGLRKA----GWSWVEEWHIVGVALHDP 58

Query: 157 KQRFSLLEENGELLIRANQGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESG 216
           K R+ L        IRA  GH+I  V  E L       E   +  HGT +  L  I+E G
Sbjct: 59  KGRYELRNG----EIRARYGHSIP-VNVEPL-----PGEPPPILYHGTTEEALPLIMERG 108

Query: 217 LKRMKRLHVHFSCGLPTDGEVISGMRRDVNVLIF-LNVRKALADGMKLYISDNKVVLTEG 275
           + R +RL VH +  L     V +G R    V +  ++V      G+K+      V   + 
Sbjct: 109 IMRGRRLKVHLTSSLED--AVSTGRRHGNLVAVLLVDVECLRRRGLKVERMSKTVYTVDW 166

Query: 276 FDGVVPVEYFEKIE 289
               VP E   ++ 
Sbjct: 167 ----VPPECIAEVR 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	299
d1wfxa_	180	Probable RNA 2'-phosphotransferase KptA {Aeropyrum	100.0
d2cqka1	88	La-related protein 4 LARP4 {Human (Homo sapiens) [	81.58

>d1wfxa_ d.166.1.5 (A:) Probable RNA 2'-phosphotransferase KptA {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Tpt1/KptA
domain: Probable RNA 2'-phosphotransferase KptA
species: Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=7.2e-62  Score=427.59  Aligned_cols=176  Identities=27%  Similarity=0.382  Sum_probs=156.4

Q ss_pred             hHHHHHHHHHhccCCCcCCceeCCCcceeHHHHHHhhhhcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEEec
Q 045972           95 DALGRLLTRILRHMASELNLNMRSDGFVKVEDLLKLNLKTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRAN  174 (299)
Q Consensus        95 ~~LSK~LSylLRH~pek~GL~mD~dG~V~v~dLL~~~~~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IRA~  174 (299)
                      ++|||+|||||||+|+++||+||+||||+|+|||+++...    .++++|.++|++||++|+||||++++  +  +|||+
T Consensus         1 v~lSK~LS~~LRH~p~~~gL~~d~~G~v~v~dLl~~~~~~----~~~~~~~~~i~~iV~~d~K~Rfel~~--~--~IRA~   72 (180)
T d1wfxa_           1 VRLSKTLAGILRHHPGRYGVRLTREGWARVSEVVEGLRKA----GWSWVEEWHIVGVALHDPKGRYELRN--G--EIRAR   72 (180)
T ss_dssp             CCHHHHHHHHHHTCTGGGTCCCCTTCCEEHHHHHHHHHHT----TCTTCCHHHHHHHHHHCSSCCEEEET--T--EEEES
T ss_pred             CeeHHHHHHHHCCCHhHCCCCcCCCCCEEHHHHHHHHHHc----CCCcCcHHHHHHHHhcCCcccceecC--C--EEEee
Confidence            4799999999999999999999999999999999986532    36779999999999999999999974  3  79999


Q ss_pred             CCCcccccccccccccCCCCCCCCeEEEeCchhcHHHHHHhCCCCCCCcceEeccCCCCCCceeeeeeeCCc-EEEEEeh
Q 045972          175 QGHTITTVESESLLKPILSAEEVSVCVHGTYKRNLDSILESGLKRMKRLHVHFSCGLPTDGEVISGMRRDVN-VLIFLNV  253 (299)
Q Consensus       175 QGHSi~~v~~~~~L~pi~~~~~~~~LyHGT~~~~~~~I~~~GLk~M~R~hVHLs~~~~~a~~V~SG~R~~~~-VlI~ID~  253 (299)
                      ||||+++ +.+  +.|   .+.|+.|||||+.++|++|+++||+||+|+|||||++.++  ++++|||++++ ++|+||+
T Consensus        73 qGHSi~v-~~~--~~~---~~~p~~lyHGT~~~~~~~I~~~GL~~m~R~hVHls~~~~~--a~~~g~R~~~~~~il~ID~  144 (180)
T d1wfxa_          73 YGHSIPV-NVE--PLP---GEPPPILYHGTTEEALPLIMERGIMRGRRLKVHLTSSLED--AVSTGRRHGNLVAVLLVDV  144 (180)
T ss_dssp             SCCSSCC-CCC--CCS---SCCCSEEEECCBGGGHHHHHHHCBCCCSSSSEEEESCHHH--HHHHHTTSSSSBEEEEEEH
T ss_pred             cCCCcce-ecc--CCC---CCCCceEEecCcHHHHHHHHHhcccccCCCeEEeccCccc--ceEEeeecCCceEEEEEeH
Confidence            9999983 333  333   3346799999999999999999999999999999999865  57889999976 5779999


Q ss_pred             HHHHhCCCeEEEeCCcEEEecCCCccccccceeeccc
Q 045972          254 RKALADGMKLYISDNKVVLTEGFDGVVPVEYFEKIES  290 (299)
Q Consensus       254 ~kA~~dGi~Fy~S~NgViLTeG~~G~IP~~yf~kv~~  290 (299)
                      ++|++||++||+|+|+||||++    ||++||++|+.
T Consensus       145 ~~a~~~Gi~f~~s~n~V~Lt~~----vp~~y~~~v~~  177 (180)
T d1wfxa_         145 ECLRRRGLKVERMSKTVYTVDW----VPPECIAEVRR  177 (180)
T ss_dssp             HHHHHTTCCCEECSSSEEEESC----BCGGGEEEEEE
T ss_pred             HHHHhCCCEEEEECCeEEEcCC----cCHHHHHHHHh
Confidence            9999999999999999999995    99999999874

>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: La domain
domain: La-related protein 4 LARP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=1.4  Score=32.41  Aligned_cols=50  Identities=24%  Similarity=0.349  Sum_probs=35.3

Q ss_pred             eCCCcceeHHHHHHhhh-hcccCCCCCCCCHHHHHHHHHhCCCCceEEeecCCceEEEecC
Q 045972          116 MRSDGFVKVEDLLKLNL-KTFAQIPLRSHTVDDIWEAVRKDNKQRFSLLEENGELLIRANQ  175 (299)
Q Consensus       116 mD~dG~V~v~dLL~~~~-~~~~~~~~~~vt~edI~~VV~~ddKqRFel~~e~g~~~IRA~Q  175 (299)
                      |++||||+++-|+..+. +..      .-+.+.|.+++....  --|+.++ + .+||-++
T Consensus        34 m~~~G~V~l~~i~~F~r~k~l------t~d~~~i~~Al~~S~--~lev~~d-~-~~VRr~~   84 (88)
T d2cqka1          34 MDSDQFIPIWTVANMEEIKKL------TTDPDLILEVLRSSP--MVQVDEK-G-EKVRPSH   84 (88)
T ss_dssp             SCTTSCEEHHHHHHCHHHHHH------CCCHHHHHHHHHHSS--SEEECSS-S-SEEEECC
T ss_pred             hcCCCCEEhHHHhcChHHHHH------cCCHHHHHHHHhcCC--eEEEeCC-C-CEeccCC
Confidence            68899999999998642 211      357888988888875  4567553 3 4788654