Citrus Sinensis ID: 046002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MNTYIYATSFDQAQRQESLKRRWQERRAVSPNMNCTTTTNTGVLVNNPNNNRLQAFPGLDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC
Secondary Structure (PSIPRED)
cccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEEccccccHHHHHHHHHHHHccccccHHccccccccccccccccEEEEEcccccEEEcccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccHHHHHcccccHHcccccccccccccccccccccccccEcccccccccccEccccccEEEEEcccEEEEEEEHHHcccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNTYIYATSFDQAQRQESLKRRWQErravspnmncttttntgvlvnnpnnnrlqafpglddddlvstvvppvTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGgeaaainseqdldlsnavpghliAYEDMENDLLLAGDLNWKDFVRVLREFGYC
Flexible Loop (DISEMBL)
mntyiyatsfdqaqrQESLKRRwqerravspnmncttttntgvlvnnPNNNRLQAFpglddddlvSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC
Low Complexity Region (SEG)
MNTYIYATSFDQAQRQESLKRRWQERRAVSPnmncttttntgvlvnnpnnnRLQAFPGlddddlvstvvppvtvvlEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC
Disordered region (IsUnstruct)
**********************************CTTTTNTGVLVNNPNNNRLQAFPGLDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGY*
Disordered Region (DISOPRED)
********************************************************************VPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGE**************AVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC
Disordered Region (DISEMBL)
MNTYIYATSFDQAQRQESLKRRWQERRAVSPNMNCTTTTNTGVLVNNPNNNRLQAFPGLDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC
Disordered Region (DISPRO)
*NTYIYATSFDQAQR***LKRRWQERRAV*PN*********************QAFPGLDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEG**********DLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTYIYATSFDQAQRQESLKRRWQERRAVSPNMNCTTTTNTGVLVNNPNNNRLQAFPGLDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q9FKM7	171	Auxin-responsive protein	yes	no	0.862	0.807	0.580	1e-31
Q6K846	182	Auxin-responsive protein	no	no	0.506	0.445	0.325	2e-06
Q38830	239	Auxin-responsive protein	no	no	0.537	0.359	0.279	2e-06
P0C128	246	Auxin-responsive protein	no	no	0.531	0.345	0.337	2e-06
Q38829	246	Auxin-responsive protein	no	no	0.537	0.349	0.293	5e-06
Q38831	247	Auxin-responsive protein	no	no	0.537	0.348	0.280	7e-06
Q69TU6	265	Auxin-responsive protein	no	no	0.468	0.283	0.367	2e-05
Q0DWF2	281	Auxin-responsive protein	no	no	0.531	0.302	0.329	2e-05
A2XB18	281	Auxin-responsive protein	N/A	no	0.531	0.302	0.329	2e-05
P33078	163	Auxin-responsive protein	no	no	0.443	0.435	0.35	3e-05

>sp|Q9FKM7|IAA33_ARATH Auxin-responsive protein IAA33 OS=Arabidopsis thaliana GN=IAA33 PE=2 SV=1

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 105/155 (67%), Gaps = 17/155 (10%)

Query: 12  QAQRQESLKRRWQERRAVSPNMNCTTT----------TNTGVLVNNPNNNRLQAFPGLD- 60
           + Q Q+SL+RR+ +  + +     TTT           N     +       Q F GL+ 
Sbjct: 5   EPQSQDSLQRRFHQDNSTTQQPRDTTTPFIPKPASKNHNNSNSSSGAAGRSFQGF-GLNV 63

Query: 61  DDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLD 120
           +DDLVS+VVPPVTVVLEGRSICQRISL KH SYQSLA ALRQMFV+G +     S  DLD
Sbjct: 64  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDGAD-----STDDLD 118

Query: 121 LSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLR 155
           LSNA+PGHLIAYEDMENDLLLAGDL WKDFVRV +
Sbjct: 119 LSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAK 153

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6K846|IAA9_ORYSJ Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEG---GEAAAINSEQDLDLSNAVPGH 128
           V V  EG +I +++ L  H+SY  LA  L +MF      GE    N +          G 
Sbjct: 95  VKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDDH-----GDAAGP 149

Query: 129 LIAYEDMENDLLLAGDLNWKDFVRVLREF 157
           ++ YED + D +L GD+ W DF R ++  
Sbjct: 150 VVTYEDGDGDWMLVGDVPWDDFARSVKRL 178

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38830|IAA12_ARATH Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIA 131
           V V ++G  I +++ +  H+SY++LA+ L +MF            + L L +     ++ 
Sbjct: 127 VKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLT 186

Query: 132 YEDMENDLLLAGDLNWKDFVRVLREF 157
           YED E D +L GD+ W+ F+  ++  
Sbjct: 187 YEDKEGDWMLVGDVPWRMFINSVKRL 212

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C128|IAA25_ORYSJ Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQM---FVEGGEAAAINSEQDLDLSNAVPGH 128
           V V LEG ++ ++I L  H SY SL++AL+ M   F+  G A   N  Q ++   +   +
Sbjct: 146 VKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQME-EGSKKRY 204

Query: 129 LIAYEDMENDLLLAGDLNWKDFVRVLREF 157
           ++ YED E D +L GD+ W+ F+  ++  
Sbjct: 205 VLVYEDNEGDRMLVGDVPWELFIASVKRL 233

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVE---GGEAAAINSEQDLD---LSNAV 125
           V V ++G  I ++I L+ H  Y+SL+  L +MF++   G      +   +     L +  
Sbjct: 139 VKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGS 198

Query: 126 PGHLIAYEDMENDLLLAGDLNWKDFVRVLREF 157
            G ++ YED E D +L GD+ W  F+  +R  
Sbjct: 199 SGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRL 230

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38831|IAA13_ARATH Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVE---GGEAAAINSEQDLDLSNAVPGH 128
           + V ++G +I +++ L+ H+SY++LA+ L  MF     G         + L L +     
Sbjct: 132 IKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEF 191

Query: 129 LIAYEDMENDLLLAGDLNWKDFVRVLREF 157
           ++ YED E D +L GD+ W+ F+  ++  
Sbjct: 192 VLTYEDKEGDWMLVGDVPWRMFINSVKRL 220

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69TU6|IAA22_ORYSJ Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQM---FVEGGEAAAINSEQDLDLSNAVPGH 128
           V V LEG ++ ++I L  H SY SL++AL+ M   F+  G A   N  Q ++   +   +
Sbjct: 94  VKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQRME-EGSKKRY 152

Query: 129 LIAYEDMENDLLLAGDLNW 147
           ++ YED E D +L GD+ W
Sbjct: 153 VLVYEDNEGDRMLVGDVPW 171

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEG--GEAAAINSEQDLDLSNAVPGHL 129
           V V ++G  I +++ L+ H SY++LA AL  MF +   G  A+ N+     L N+   + 
Sbjct: 166 VKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDNSAE-YQ 224

Query: 130 IAYEDMENDLLLAGDLNWKDFVRVLREF 157
           + YED + D +L GD+ W+ FV  ++  
Sbjct: 225 LTYEDRDGDWMLVGDVPWEMFVSSVKRL 252

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XB18|IAA10_ORYSI Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEG--GEAAAINSEQDLDLSNAVPGHL 129
           V V ++G  I +++ L+ H SY++LA AL  MF +   G  A+ N+     L N+   + 
Sbjct: 166 VKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDNSAE-YQ 224

Query: 130 IAYEDMENDLLLAGDLNWKDFVRVLREF 157
           + YED + D +L GD+ W+ FV  ++  
Sbjct: 225 LTYEDRDGDWMLVGDVPWEMFVSSVKRL 252

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P33078|IAA5_ARATH Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 72  VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIA 131
           V V ++G +  ++I L  +  YQ LA AL+ +F        IN +  L  S  VP     
Sbjct: 77  VKVSVDGAAFLRKIDLEMYKCYQDLASALQILF-----GCYINFDDTLKESECVP----I 127

Query: 132 YEDMENDLLLAGDLNWKDFV 151
           YED + D +LAGD+ W+ F+
Sbjct: 128 YEDKDGDWMLAGDVPWEMFL 147

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
388493792	162	unknown [Lotus japonicus]	0.843	0.833	0.659	1e-41
255582934	173	transcription factor, putative [Ricinus	0.893	0.826	0.664	9e-40
224142247	149	predicted protein [Populus trichocarpa]	0.637	0.684	0.702	1e-38
224126003	117	predicted protein [Populus trichocarpa]	0.606	0.829	0.735	2e-37
225446042	168	PREDICTED: auxin-responsive protein IAA3	0.931	0.886	0.593	5e-37
357479657	173	Indole-3-acetic acid inducible [Medicago	0.662	0.612	0.709	2e-33
449466673	144	PREDICTED: auxin-responsive protein IAA3	0.575	0.638	0.688	4e-30
304322727	170	indole-3-acetic acid inducible 33 [Arabi	0.881	0.829	0.578	5e-30
284794625	160	indole-3-acetic acid inducible 33 [Arabi	0.862	0.862	0.580	5e-30
304322725	170	indole-3-acetic acid inducible 33 [Arabi	0.862	0.811	0.580	6e-30

>gi|388493792|gb|AFK34962.1| unknown [Lotus japonicus]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 105/141 (74%), Gaps = 6/141 (4%)

Query: 16  QESLKRRWQERRAVSPNMNCTTTTNTGVLVNNPNNNRLQAFPGLDDDDLVS-TVVPPVTV 74
           ++SLKRRWQERR +   M        G   NN +N        L+DDDLVS TVVP VTV
Sbjct: 6   EDSLKRRWQERRQI---MGAPLANFYGNNSNNFSNMAKYGSKFLEDDDLVSSTVVPAVTV 62

Query: 75  VLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYED 134
           VLEGRSICQRISLH HASYQSLAKALR MFV+  E  ++ S  DLDLSNA+PG+LIAYED
Sbjct: 63  VLEGRSICQRISLHNHASYQSLAKALRNMFVDASE--SVESNDDLDLSNAIPGYLIAYED 120

Query: 135 MENDLLLAGDLNWKDFVRVLR 155
           MENDLLLAGDL+WKDFVRV +
Sbjct: 121 MENDLLLAGDLSWKDFVRVAK 141

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582934|ref|XP_002532238.1| transcription factor, putative [Ricinus communis] gi|223528072|gb|EEF30147.1| transcription factor, putative [Ricinus communis]

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 107/161 (66%), Positives = 123/161 (76%), Gaps = 18/161 (11%)

Query: 9   SFD-QAQRQE-SLKRRWQE--RRAVS-----PNMNCTTTTNTGVLVNNPNNNRLQAFPGL 59
           +FD + QRQ+ SLKRRW    +R++S     PN N T   NT   ++N      + FP L
Sbjct: 3   TFDPEQQRQDHSLKRRWHAEIKRSLSSSNIRPNFNVTHA-NTPTFISNS-----KPFPAL 56

Query: 60  --DDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAI-NSE 116
             DDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLA ALRQMFV+GG+A  + +S+
Sbjct: 57  YDDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAMALRQMFVDGGDAGGVTDSD 116

Query: 117 QDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREF 157
            DLDL+NAVPGHLIAYEDMENDLLLAGDLNWKDFVRV +  
Sbjct: 117 TDLDLTNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRI 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142247|ref|XP_002324470.1| predicted protein [Populus trichocarpa] gi|222865904|gb|EEF03035.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 89/111 (80%), Gaps = 9/111 (8%)

Query: 56  FPGLDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGG------- 108
           FPG +DDD+VST++PPVTV LEGRSICQRISLHKH SY SLAKALRQMFV+G        
Sbjct: 21  FPGFEDDDVVSTMIPPVTVALEGRSICQRISLHKHESYHSLAKALRQMFVDGAGSDSGQN 80

Query: 109 --EAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREF 157
              A+   S+ DLDLSNA+PGHLIAYED+ENDLLLAGDLNW+DFVRV +  
Sbjct: 81  TSSASDSVSDLDLDLSNAIPGHLIAYEDIENDLLLAGDLNWQDFVRVAKRI 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126003|ref|XP_002329637.1| predicted protein [Populus trichocarpa] gi|222870518|gb|EEF07649.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/106 (73%), Positives = 88/106 (83%), Gaps = 9/106 (8%)

Query: 61  DDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAIN------ 114
           DDDLVST++PPVTVVLEGRSICQRISLHKHASY SLAKALRQMFV+GG  +  +      
Sbjct: 1   DDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGGSDSGGSTASSAS 60

Query: 115 ---SEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREF 157
              S+ DLDL+NAVPGHLIAYED+E+DLLLAGDLNWKDFVRV +  
Sbjct: 61  ESVSDHDLDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKRI 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446042|ref|XP_002268816.1| PREDICTED: auxin-responsive protein IAA33 [Vitis vinifera] gi|297735399|emb|CBI17839.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 110/160 (68%), Gaps = 11/160 (6%)

Query: 1   MNTYIYATSFDQAQRQESL-KRRWQERRAVSPNMNCTTTTNTGVLVNNPNNNRLQAFPGL 59
           MNT+ +     Q Q Q+S   RRW +    S   +             P+++ +Q FPGL
Sbjct: 1   MNTFRF-----QHQTQDSFDSRRWSQNHRPS---SAGFYARRAAAPPQPSSSSIQTFPGL 52

Query: 60  DDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEA--AAINSEQ 117
            DDDLV+ VVPPVTVVLEGRSIC RISLH HASYQSLA+ALRQMFV+G  A   A   + 
Sbjct: 53  ADDDLVAAVVPPVTVVLEGRSICHRISLHSHASYQSLARALRQMFVDGSSADVGAAGGDH 112

Query: 118 DLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREF 157
           +LDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRV +  
Sbjct: 113 ELDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVAKRI 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479657|ref|XP_003610114.1| Indole-3-acetic acid inducible [Medicago truncatula] gi|355511169|gb|AES92311.1| Indole-3-acetic acid inducible [Medicago truncatula]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/110 (70%), Positives = 87/110 (79%), Gaps = 4/110 (3%)

Query: 51  NRLQAFP-GLD-DDDLVST-VVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEG 107
           N+LQ    GL+ DDDLVS+ VVP VTVVLEGRSICQRISLH H SYQSLAKALRQMFV+ 
Sbjct: 46  NKLQTLSHGLELDDDLVSSSVVPAVTVVLEGRSICQRISLHNHGSYQSLAKALRQMFVDC 105

Query: 108 GEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREF 157
            +      +  LDLSNA+PGH+IAYEDMENDLLLAGDL WKDFVRV +  
Sbjct: 106 TDDCDA-GDHHLDLSNAIPGHVIAYEDMENDLLLAGDLTWKDFVRVAKRI 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466673|ref|XP_004151050.1| PREDICTED: auxin-responsive protein IAA33-like [Cucumis sativus]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 79/93 (84%), Gaps = 1/93 (1%)

Query: 66  STVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINS-EQDLDLSNA 124
           + V+PPVTVVLEGR+ICQRISLHKH SY+SLAKALR+MFV+  +    +S E+ LDL+NA
Sbjct: 37  AAVIPPVTVVLEGRAICQRISLHKHGSYESLAKALRRMFVDDDDNDGEDSGERGLDLTNA 96

Query: 125 VPGHLIAYEDMENDLLLAGDLNWKDFVRVLREF 157
           VPG+++AYED+ENDLLLAGDLNW DFVRV +  
Sbjct: 97  VPGYIVAYEDIENDLLLAGDLNWNDFVRVAKRI 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|304322727|gb|ADL70834.1| indole-3-acetic acid inducible 33 [Arabidopsis thaliana] gi|304322745|gb|ADL70843.1| indole-3-acetic acid inducible 33 [Arabidopsis thaliana]

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 108/159 (67%), Gaps = 18/159 (11%)

Query: 8   TSFDQAQRQESLKRRWQERRAVSPNMNCTTT----------TNTGVLVNNPNNNRLQAFP 57
           +SF + Q Q+SL+RR+ +  + +     TTT           N     +       Q F 
Sbjct: 1   SSF-EPQSQDSLQRRFHQDNSTTQQPRDTTTPFIPKPASKNHNNSNSSSGAAGRSFQGF- 58

Query: 58  GLD-DDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSE 116
           GL+ +DDLVS+VVPPVTVVLEGRSICQRISL KH SYQSLA ALRQMFV+G +     S 
Sbjct: 59  GLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDGAD-----ST 113

Query: 117 QDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLR 155
            DLDLSNA+PGHLIAYEDMENDLLLAGDL WKDFVRV +
Sbjct: 114 DDLDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAK 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284794625|gb|ADB93685.1| indole-3-acetic acid inducible 33 [Arabidopsis thaliana]

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 105/155 (67%), Gaps = 17/155 (10%)

Query: 12  QAQRQESLKRRWQERRAVSPNMNCTTT----------TNTGVLVNNPNNNRLQAFPGLD- 60
           + Q Q+SL+RR+ +  + +     TTT           N     +       Q F GL+ 
Sbjct: 1   EPQSQDSLQRRFHQDNSTTQQPRDTTTPFIPKPASKNHNNSNSSSGAAGRSFQGF-GLNV 59

Query: 61  DDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLD 120
           +DDLVS+VVPPVTVVLEGRSICQRISL KH SYQSLA ALRQMFV+G +     S  DLD
Sbjct: 60  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDGAD-----STDDLD 114

Query: 121 LSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLR 155
           LSNA+PGHLIAYEDMENDLLLAGDL WKDFVRV +
Sbjct: 115 LSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAK 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|304322725|gb|ADL70833.1| indole-3-acetic acid inducible 33 [Arabidopsis thaliana] gi|304322731|gb|ADL70836.1| indole-3-acetic acid inducible 33 [Arabidopsis thaliana] gi|304322737|gb|ADL70839.1| indole-3-acetic acid inducible 33 [Arabidopsis thaliana]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 105/155 (67%), Gaps = 17/155 (10%)

Query: 12  QAQRQESLKRRWQERRAVSPNMNCTTT----------TNTGVLVNNPNNNRLQAFPGLD- 60
           + Q Q+SL+RR+ +  + +     TTT           N     +       Q F GL+ 
Sbjct: 4   EPQSQDSLQRRFHQDNSTTQQPRDTTTPFIPKPASKNHNNSNSSSGAAGRSFQGF-GLNV 62

Query: 61  DDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLD 120
           +DDLVS+VVPPVTVVLEGRSICQRISL KH SYQSLA ALRQMFV+G +     S  DLD
Sbjct: 63  EDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDGAD-----STDDLD 117

Query: 121 LSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLR 155
           LSNA+PGHLIAYEDMENDLLLAGDL WKDFVRV +
Sbjct: 118 LSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAK 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2174562	171	IAA33 "indole-3-acetic acid in	0.462	0.432	0.784	1.4e-29
UNIPROTKB|Q6K846	182	IAA9 "Auxin-responsive protein	0.481	0.423	0.341	2.3e-07
TAIR|locus:2197838	239	IAA12 "indole-3-acetic acid in	0.493	0.330	0.278	2e-06
TAIR|locus:2051154	247	IAA13 "auxin-induced protein 1	0.493	0.319	0.292	2.2e-06
TAIR|locus:2196573	163	IAA5 "indole-3-acetic acid ind	0.412	0.404	0.346	1.9e-05
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.493	0.261	0.294	3.4e-05
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.462	0.323	0.333	6.7e-05
UNIPROTKB|Q6AT10	212	IAA15 "Auxin-responsive protei	0.462	0.349	0.298	9.3e-05
UNIPROTKB|Q5W670	327	IAA18 "Auxin-responsive protei	0.493	0.241	0.311	0.00018
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.493	0.233	0.3	0.00019

TAIR|locus:2174562 IAA33 "indole-3-acetic acid inducible 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 62/79 (78%), Positives = 66/79 (83%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDME 136
             EGRSICQRISL KH SYQSLA ALRQMFV+G +     S  DLDLSNA+PGHLIAYEDME
Sbjct:    80 EGRSICQRISLDKHGSYQSLASALRQMFVDGAD-----STDDLDLSNAIPGHLIAYEDME 134

Query:   137 NDLLLAGDLNWKDFVRVLR 155
             NDLLLAGDL WKDFVRV +
Sbjct:   135 NDLLLAGDLTWKDFVRVAK 153

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

UNIPROTKB|Q6K846 IAA9 "Auxin-responsive protein IAA9" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDME 136
             EG +I +++ L  H+SY  LA  L +MF             D D  +A  G ++ YED +
Sbjct:   100 EGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMAND-DHGDAA-GPVVTYEDGD 157

Query:   137 NDLLLAGDLNWKDFVRVLR 155
              D +L GD+ W DF R ++
Sbjct:   158 GDWMLVGDVPWDDFARSVK 176

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2197838 IAA12 "indole-3-acetic acid inducible 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 22/79 (27%), Positives = 42/79 (53%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDME 136
             +G  I +++ +  H+SY++LA+ L +MF            + L L +     ++ YED E
Sbjct:   132 DGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTYEDKE 191

Query:   137 NDLLLAGDLNWKDFVRVLR 155
              D +L GD+ W+ F+  ++
Sbjct:   192 GDWMLVGDVPWRMFINSVK 210

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048364 "root development" evidence=IMP

TAIR|locus:2051154 IAA13 "auxin-induced protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 24/82 (29%), Positives = 46/82 (56%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAA-INSE--QDLDLSNAVPGHLIAYE 133
             +G +I +++ L+ H+SY++LA+ L  MF         + S+  + L L +     ++ YE
Sbjct:   137 DGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYE 196

Query:   134 DMENDLLLAGDLNWKDFVRVLR 155
             D E D +L GD+ W+ F+  ++
Sbjct:   197 DKEGDWMLVGDVPWRMFINSVK 218

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2196573 IAA5 "indole-3-acetic acid inducible 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDME 136
             +G +  ++I L  +  YQ LA AL+ +F        IN +  L  S  VP     YED +
Sbjct:    82 DGAAFLRKIDLEMYKCYQDLASALQILF-----GCYINFDDTLKESECVP----IYEDKD 132

Query:   137 NDLLLAGDLNWKDFV 151
              D +LAGD+ W+ F+
Sbjct:   133 GDWMLAGDVPWEMFL 147

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA;TAS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVE---GGEAAAINSEQDLD---LSNAVPGHLI 130
             +G  I ++I L+ H  Y+SL+  L +MF++   G      +   +     L +   G ++
Sbjct:   144 DGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVL 203

Query:   131 AYEDMENDLLLAGDLNWKDFVRVLR 155
              YED E D +L GD+ W  F+  +R
Sbjct:   204 TYEDKEGDWMLVGDVPWGMFIGSVR 228

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 28/84 (33%), Positives = 42/84 (50%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVE------GGEAAAI---NSEQDLDLSNAVPG 127
             +G    ++I L  + SY  L+ AL  MF        GGE   I   N  + +DL N+   
Sbjct:   118 DGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWD- 176

Query:   128 HLIAYEDMENDLLLAGDLNWKDFV 151
             ++ +YED + D +L GD+ W  FV
Sbjct:   177 YVPSYEDKDGDWMLVGDVPWPMFV 200

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|Q6AT10 IAA15 "Auxin-responsive protein IAA15" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 97 (39.2 bits), Expect = 9.3e-05, P = 9.3e-05
 Identities = 23/77 (29%), Positives = 39/77 (50%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPG--HLIAYED 134
             +G    +++ L  +  Y  L  AL+  F        + +E+ + L +AV G  ++  YED
Sbjct:   115 DGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEE-MKLVDAVSGNEYVPTYED 173

Query:   135 MENDLLLAGDLNWKDFV 151
              + D +L GD+ WK FV
Sbjct:   174 KDGDWMLVGDVPWKMFV 190

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5W670 IAA18 "Auxin-responsive protein IAA18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 98 (39.6 bits), Expect = 0.00018, P = 0.00018
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMF---VEGGE--AAAINSEQ---DLDLSNAVPG- 127
             +G  I +++ L  + SYQ L+ A+ ++F   +E  +  + A + EQ   D   S  + G 
Sbjct:   217 DGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGT 276

Query:   128 --HLIAYEDMENDLLLAGDLNWKDFVRVLR 155
               + + YED + D +LAGD+ WK FV  ++
Sbjct:   277 GVYTLVYEDNDGDRMLAGDIPWKVFVSTVK 306

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00019, P = 0.00019
 Identities = 27/90 (30%), Positives = 46/90 (51%)

Query:    77 EGRSICQRISLHKHASYQSLAKALRQMFVE------GGEAAA---INSEQDL-DLSNAVP 126
             +G    +++ L  + +Y  L+ AL +MF        G   AA   + SE  L DL N   
Sbjct:   224 DGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNG-K 282

Query:   127 GHLIAYEDMENDLLLAGDLNWKDFVRVLRE 156
              +++ YED + D +L GD+ W+ F+ V ++
Sbjct:   283 DYVLTYEDKDGDWMLVGDVPWEMFIDVCKK 312

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FKM7	IAA33_ARATH	No assigned EC number	0.5806	0.8625	0.8070	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	3e-08

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 78  GRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMEN 137
            R +     L  + SY  L+ AL +MF        I     LDL N    ++  YED + 
Sbjct: 103 LRKVD----LKMYKSYDELSSALEKMFSCFT----IGESGLLDLLNG-SEYVPTYEDKDG 153

Query: 138 DLLLAGDLNWKDFV 151
           D +L GD+ W+ FV
Sbjct: 154 DWMLVGDVPWEMFV 167

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.74
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.42
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.41
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.31
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.28
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.79
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.65
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.49
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.18
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	96.03
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.86
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	95.36
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.98
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	84.92

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=1.8e-43  Score=289.01  Aligned_cols=114  Identities=27%  Similarity=0.422  Sum_probs=4.7

Q ss_pred             ccCCCCCCCcCCCCCCCCCCCCCCCCCceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccc-c---cccccccc
Q 046002           44 LVNNPNNNRLQAFPGLDDDDLVSTVVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEA-A---AINSEQDL  119 (160)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~-~---~~~~~~~l  119 (160)
                      .++||+.++++...+.  +..++..++||||+|||+||||||||++|+||++|+.+|++||.+.... +   +....+.+
T Consensus        86 ~vgwpp~~s~r~n~~~--~~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~  163 (215)
T PF02309_consen   86 VVGWPPVRSFRKNSLS--EKQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLL  163 (215)
T ss_dssp             BTTBS----S----------------------------------------------------------------------
T ss_pred             ccCCCccccccccccc--ccccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhc
Confidence            4599999998875444  2333446999999999999999999999999999999999999554321 0   11122334


Q ss_pred             ccCCCCCCcEEEEEcCCCCeEEcCCcChHHHHhccceeEeC
Q 046002          120 DLSNAVPGHLIAYEDMENDLLLAGDLNWKDFVRVLREFGYC  160 (160)
Q Consensus       120 dl~~~~~~~~l~YeD~EGD~MLVGDvPW~~Fv~sVKRLrI~  160 (160)
                      +|.+ .++|+|||||+||||||||||||+|||++||||+|+
T Consensus       164 ~~~~-~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~  203 (215)
T PF02309_consen  164 DLLN-GSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIM  203 (215)
T ss_dssp             -----------------------------------------
T ss_pred             cccC-CcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEe
Confidence            5555 459999999999999999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.74  E-value=0.00015  Score=49.99  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=54.9

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC-cChHHH
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD-LNWKDF  150 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD-vPW~~F  150 (160)
                      +|+...|. +=|.+.+..--+|++|...+++.|+...                 ..+.|.|.|.||||..+.+ .=|++.
T Consensus         4 vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~~-----------------~~~~l~Y~D~dgD~V~i~sd~Dl~~a   65 (84)
T PF00564_consen    4 VKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLLD-----------------EDFQLKYKDEDGDLVTISSDEDLQEA   65 (84)
T ss_dssp             EEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTST-----------------SSEEEEEEETTSSEEEESSHHHHHHH
T ss_pred             EEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCCC-----------------ccEEEEeeCCCCCEEEeCCHHHHHHH
Confidence            78999995 4446888888899999999999999862                 2578999999999998874 558888


Q ss_pred             Hhccc
Q 046002          151 VRVLR  155 (160)
Q Consensus       151 v~sVK  155 (160)
                      +..++
T Consensus        66 ~~~~~   70 (84)
T PF00564_consen   66 IEQAK   70 (84)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88875

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.42  E-value=0.001  Score=45.60  Aligned_cols=65  Identities=18%  Similarity=0.315  Sum_probs=52.0

Q ss_pred             eEEEEcCceeeeeeccC-CCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC-cChHH
Q 046002           72 VTVVLEGRSICQRISLH-KHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD-LNWKD  149 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~-~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD-vPW~~  149 (160)
                      |||.-.|.  -|.+-+. ..-+|++|...|.+.|+...                 ..+.+.|.|.||||..+.+ .=|++
T Consensus         3 vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~-----------------~~~~l~y~D~e~d~v~l~sd~Dl~~   63 (81)
T cd05992           3 VKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA-----------------VSFKLKYPDEDGDLVTISSDEDLEE   63 (81)
T ss_pred             EEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC-----------------CcEEEEeeCCCCCEEEeCCHHHHHH
Confidence            78888874  3445555 88999999999999998752                 2468999999999998887 77777


Q ss_pred             HHhccc
Q 046002          150 FVRVLR  155 (160)
Q Consensus       150 Fv~sVK  155 (160)
                      -++.++
T Consensus        64 a~~~~~   69 (81)
T cd05992          64 AIEEAR   69 (81)
T ss_pred             HHHHHh
Confidence            777765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>smart00666 PB1 PB1 domain

Probab=97.41  E-value=0.001  Score=45.86  Aligned_cols=65  Identities=18%  Similarity=0.330  Sum_probs=52.1

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC-CcChHHH
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG-DLNWKDF  150 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG-DvPW~~F  150 (160)
                      |||.-.|  --|.+-+..--+|++|..++.+.|+...                 ..+.|.|+|.||||..+. |.=|++-
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~~~-----------------~~~~l~Y~Dedgd~v~l~sd~Dl~~a   64 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGLDN-----------------QSFTLKYQDEDGDLVSLTSDEDLEEA   64 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCCCC-----------------CCeEEEEECCCCCEEEecCHHHHHHH
Confidence            7888855  4677888889999999999999998642                 357899999999998665 4677777


Q ss_pred             Hhccc
Q 046002          151 VRVLR  155 (160)
Q Consensus       151 v~sVK  155 (160)
                      +..++
T Consensus        65 ~~~~~   69 (81)
T smart00666       65 IEEYD   69 (81)
T ss_pred             HHHHH
Confidence            77665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.31  E-value=0.0013  Score=48.47  Aligned_cols=58  Identities=16%  Similarity=0.170  Sum_probs=46.4

Q ss_pred             eEEEEcCceeeeeeccC---CCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCCc
Q 046002           72 VTVVLEGRSICQRISLH---KHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDL  145 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~---~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGDv  145 (160)
                      |||.-+|.-+==++++.   ..-+|++|...+++.|.+..                ..+++|.|.|.||||..+-.+
T Consensus         3 vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~----------------~~~~~l~Y~Dedgd~V~l~~D   63 (91)
T cd06398           3 VKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSP----------------DADLSLTYTDEDGDVVTLVDD   63 (91)
T ss_pred             EEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCC----------------CCcEEEEEECCCCCEEEEccH
Confidence            89999997544455553   46799999999999998753                247899999999999987654

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.28  E-value=0.0013  Score=47.46  Aligned_cols=53  Identities=15%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEc
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLA  142 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLV  142 (160)
                      |||...|.  -+.+-|..--+|++|..++.++|....                ...+.|-|.|.||||.++
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~~----------------~~~f~LkY~Ddegd~v~l   55 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLDD----------------MSAFDLKYLDDDEEWVLL   55 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCCC----------------CCeeEEEEECCCCCeEEe
Confidence            89999886  445666666699999999999999742                246899999999999876

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.79  E-value=0.007  Score=44.20  Aligned_cols=53  Identities=21%  Similarity=0.254  Sum_probs=46.1

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG  143 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG  143 (160)
                      |||.-.|.-+--+++-+..-+|++|..++.++|++.                   .+.|.|-|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-------------------~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-------------------DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-------------------cceeEEEcCCCCEEEEE
Confidence            799999988877888877889999999999999986                   24689999999998763

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.65  E-value=0.0049  Score=45.36  Aligned_cols=50  Identities=18%  Similarity=0.155  Sum_probs=38.7

Q ss_pred             eeeeee--ccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002           80 SICQRI--SLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG  143 (160)
Q Consensus        80 ~IGRKV--DL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG  143 (160)
                      |-||.+  -+....|+.+|..++.+-|+....              ....+.|.|.|.||||.++-
T Consensus         8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~--------------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDF--------------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCEEEEEecCCCCHHHHHHHHHHHhCCccc--------------cCCcccEEEEcCCCCEEEEe
Confidence            456544  444578999999999999988653              13578999999999998764

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.49  E-value=0.0098  Score=43.56  Aligned_cols=68  Identities=19%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC-CcChHHH
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG-DLNWKDF  150 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG-DvPW~~F  150 (160)
                      ||..-+++=-=-.+|.....+|+++++-|+.|+.+..                 -.++|-|.|.+||++-+- |+-...=
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~-----------------~~f~i~Y~D~~gDLLPInNDdNf~kA   65 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPN-----------------VDFLIGYTDPHGDLLPINNDDNFLKA   65 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCC-----------------CcEEEEEeCCCCCEecccCcHHHHHH
Confidence            6666666432234555666999999999999999864                 258999999999999764 4555555


Q ss_pred             Hhccce
Q 046002          151 VRVLRE  156 (160)
Q Consensus       151 v~sVKR  156 (160)
                      +.+++.
T Consensus        66 lssa~p   71 (80)
T cd06403          66 LSSANP   71 (80)
T ss_pred             HHcCCC
Confidence            555554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.18  E-value=0.041  Score=40.33  Aligned_cols=72  Identities=21%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             eEEEEcCceeeeeeccCCC-CCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCCc---Ch
Q 046002           72 VTVVLEGRSICQRISLHKH-ASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDL---NW  147 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~-~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGDv---PW  147 (160)
                      +|+.-+| .| |++-+..- -+|.+|...+++.|...-.              ....+.|.|.|.|||+.-+.+.   -|
T Consensus         3 iK~~~g~-Di-R~~~~~~~~~t~~~L~~~v~~~F~~~~~--------------~~~~flIKYkD~dGDlVTIts~~dL~~   66 (81)
T cd06401           3 LKAQLGD-DI-RRIPIHNEDITYDELLLMMQRVFRGKLG--------------SSDDVLIKYKDEDGDLITIFDSSDLSF   66 (81)
T ss_pred             EEEEeCC-eE-EEEeccCccccHHHHHHHHHHHhccccC--------------CcccEEEEEECCCCCEEEeccHHHHHH
Confidence            6777766 45 44555543 3999999999999996421              1457899999999999999873   34


Q ss_pred             HHHHhccceeEe
Q 046002          148 KDFVRVLREFGY  159 (160)
Q Consensus       148 ~~Fv~sVKRLrI  159 (160)
                      -.=+...+||+|
T Consensus        67 A~~~~~~~~l~~   78 (81)
T cd06401          67 AIQCSRILKLTL   78 (81)
T ss_pred             HHhcCcceEEEE
Confidence            433444455544

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=96.03  E-value=0.039  Score=40.70  Aligned_cols=58  Identities=21%  Similarity=0.293  Sum_probs=43.2

Q ss_pred             ceEEEEcC---ceeeeeecc--CCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC
Q 046002           71 PVTVVLEG---RSICQRISL--HKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD  144 (160)
Q Consensus        71 ~VKV~MeG---~~IGRKVDL--~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD  144 (160)
                      .||.+..|   .+==|++-|  ....+|++|...++++|....                ...+.|.|.|.|||..-+..
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~----------------~~~ftlky~DeeGDlvtIss   64 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLR----------------GKNFQLFWKDEEGDLVAFSS   64 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccccC----------------CCcEEEEEECCCCCEEeecC
Confidence            57888877   223344444  666799999999999996532                24689999999999987654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.86  E-value=0.037  Score=40.73  Aligned_cols=54  Identities=19%  Similarity=0.178  Sum_probs=44.3

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG  143 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG  143 (160)
                      +|+.-.|.-.--.+|.  .-+|++|.+.+++||....                ...+++.|.|.|||.--+.
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~~----------------~q~ft~kw~DEEGDp~tiS   56 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFHN----------------DQPFTLKWIDEEGDPCTIS   56 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCCC----------------CCcEEEEEECCCCCceeec
Confidence            7999999766666666  6789999999999999853                2468999999999986554

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=95.36  E-value=0.065  Score=39.46  Aligned_cols=63  Identities=21%  Similarity=0.306  Sum_probs=49.7

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC-CcChHHH
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG-DLNWKDF  150 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG-DvPW~~F  150 (160)
                      -||.-+|  --|++....-=+|.+|.+.|+.+|.+...                 .+.|+|.|.|||..-+- |.--++|
T Consensus         3 fKv~~~g--~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~-----------------~~~vtYiDeD~D~ITlssd~eL~d~   63 (82)
T cd06397           3 FKSSFLG--DTRRIVFPDIPTWEALASKLENLYNLPEI-----------------KVGVTYIDNDNDEITLSSNKELQDF   63 (82)
T ss_pred             EEEEeCC--ceEEEecCCCccHHHHHHHHHHHhCCChh-----------------HeEEEEEcCCCCEEEecchHHHHHH
Confidence            4888888  57999999999999999999999999742                 16799999999987544 4555555


Q ss_pred             Hhc
Q 046002          151 VRV  153 (160)
Q Consensus       151 v~s  153 (160)
                      .+-
T Consensus        64 ~~~   66 (82)
T cd06397          64 YRL   66 (82)
T ss_pred             HHh
Confidence            543

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.98  E-value=0.42  Score=35.29  Aligned_cols=53  Identities=19%  Similarity=0.265  Sum_probs=43.6

Q ss_pred             ceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC
Q 046002           71 PVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD  144 (160)
Q Consensus        71 ~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD  144 (160)
                      -|||+-.|.  -|-|-+..-=+|++|...+.++|+...                  .+.|-|.|. ||..-+++
T Consensus         4 kVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~~------------------~~~iKykDE-GD~iti~s   56 (86)
T cd06408           4 RVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFKR------------------RLKIKMKDD-GDMITMGD   56 (86)
T ss_pred             EEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCCC------------------ceEEEEEcC-CCCccccC
Confidence            489998887  566666667779999999999998742                  467999999 99988876

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=84.92  E-value=1.7  Score=32.72  Aligned_cols=43  Identities=23%  Similarity=0.302  Sum_probs=34.4

Q ss_pred             eeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEc
Q 046002           81 ICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLA  142 (160)
Q Consensus        81 IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLV  142 (160)
                      |+=.=||+.--+|.+|.....+-|.....                   .|-|.|.|||+.-+
T Consensus        18 i~vee~l~~~P~~kdLl~lmr~~f~~~dI-------------------aLNYrD~EGDLIRl   60 (92)
T cd06399          18 IAVEEDLSSTPLLKDLLELTRREFQREDI-------------------ALNYRDAEGDLIRL   60 (92)
T ss_pred             eEeecccccCccHHHHHHHHHHHhchhhe-------------------eeeeecCCCCEEEE
Confidence            44444788889999999999999988643                   47899999998744

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.56
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.51
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.6
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.14
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	93.67
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	89.46
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	85.89
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	85.46
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	83.99
1pqs_A	77	Cell division control protein 24; alpha and beta p	83.52

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.56  E-value=0.0066  Score=43.74  Aligned_cols=69  Identities=16%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             CceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC-cChH
Q 046002           70 PPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD-LNWK  148 (160)
Q Consensus        70 ~~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD-vPW~  148 (160)
                      .-||..-++.--=-.+|-....+|++|+..|+++|.+..                 ..++|.|.|.+||++-+-. +-..
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~-----------------~~f~i~Y~D~dGDLlpInnDdnl~   69 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG-----------------LDVLLGYTDAHGDLLPLTNDDSLH   69 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT-----------------CCCEEEEECTTSCEEECCSHHHHH
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC-----------------CCEEEEEECCCCCEeeecCHHHHH
Confidence            457888888643335555677899999999999998532                 3589999999999997754 3333


Q ss_pred             HHHhccc
Q 046002          149 DFVRVLR  155 (160)
Q Consensus       149 ~Fv~sVK  155 (160)
                      +=+.++|
T Consensus        70 ~Al~~a~   76 (86)
T 1wmh_B           70 RALASGP   76 (86)
T ss_dssp             HHTTSSS
T ss_pred             HHHHhCC
Confidence            3334444

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.51  E-value=0.007  Score=43.60  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             CCceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002           69 VPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG  143 (160)
Q Consensus        69 ~~~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG  143 (160)
                      ..=|||+-+|.-+  .+.+..--+|++|...|.++|....                ...+++.|.|.|||+.-+-
T Consensus         6 ~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~----------------~~~f~lky~DEeGD~itis   62 (89)
T 1vd2_A            6 QVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDN----------------EQLFTMKWIDEEGDPCTVS   62 (89)
T ss_dssp             CEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCS----------------SCCEEEEECCSSSCCEECC
T ss_pred             eEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCC----------------CCeEEEEEECCCCCccccc
Confidence            3468889999754  4444446799999999999999752                2358999999999987553

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.60  E-value=0.027  Score=41.40  Aligned_cols=61  Identities=18%  Similarity=0.188  Sum_probs=44.7

Q ss_pred             CCCceEEEEcCc----eeeeeeccCC-----------CCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEE
Q 046002           68 VVPPVTVVLEGR----SICQRISLHK-----------HASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAY  132 (160)
Q Consensus        68 ~~~~VKV~MeG~----~IGRKVDL~~-----------~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~Y  132 (160)
                      ...-||++..|.    .==|++-|..           ..+|++|...++++|....                ...|.|.|
T Consensus         4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----------------~~~f~l~Y   67 (102)
T 2kkc_A            4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----------------PGGFQAHY   67 (102)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----------------SSCEEEEE
T ss_pred             ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC----------------CCcEEEEE
Confidence            345689999762    3346665542           2489999999999997532                23689999


Q ss_pred             EcCCCCeEEcCC
Q 046002          133 EDMENDLLLAGD  144 (160)
Q Consensus       133 eD~EGD~MLVGD  144 (160)
                      .|.|||+.-+.+
T Consensus        68 ~DedGDlItiSs   79 (102)
T 2kkc_A           68 RAERGDLVAFSS   79 (102)
T ss_dssp             ECTTCCEEEECS
T ss_pred             ECCCCCEEEecC
Confidence            999999987665

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.14  E-value=0.052  Score=41.00  Aligned_cols=62  Identities=18%  Similarity=0.142  Sum_probs=44.4

Q ss_pred             CCCCceEEEEcC----ceeeeeeccC-----------CCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEE
Q 046002           67 TVVPPVTVVLEG----RSICQRISLH-----------KHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIA  131 (160)
Q Consensus        67 ~~~~~VKV~MeG----~~IGRKVDL~-----------~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~  131 (160)
                      ....-||++..|    ..==|++-|.           .-.+|++|...++++|..-.                ...|.|.
T Consensus        18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~----------------~~~f~l~   81 (117)
T 2ktr_A           18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR----------------PGGFQAH   81 (117)
T ss_dssp             --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----------------SSCEEEE
T ss_pred             cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC----------------CCcEEEE
Confidence            345779999975    1223555554           13599999999999996432                2368999


Q ss_pred             EEcCCCCeEEcCC
Q 046002          132 YEDMENDLLLAGD  144 (160)
Q Consensus       132 YeD~EGD~MLVGD  144 (160)
                      |.|.|||+.-+-.
T Consensus        82 YkDEdGDlItISs   94 (117)
T 2ktr_A           82 YRAERGDLVAFSS   94 (117)
T ss_dssp             EECTTCCEEEECS
T ss_pred             EECCCCCEEEecC
Confidence            9999999987654

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=93.67  E-value=0.25  Score=36.23  Aligned_cols=73  Identities=16%  Similarity=0.282  Sum_probs=53.1

Q ss_pred             CceEEEEcCc----ee--eeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002           70 PPVTVVLEGR----SI--CQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG  143 (160)
Q Consensus        70 ~~VKV~MeG~----~I--GRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG  143 (160)
                      .-|||+-+..    ++  .|.|=+..--+|++|...+.+-|..... .        +.   .....|-|+|.|||+...+
T Consensus         6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-~--------~i---~~~~klkYkDEdGD~Vtl~   73 (98)
T 1q1o_A            6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-N--------NI---SPITKIKYQDEDGDFVVLG   73 (98)
T ss_dssp             EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-S--------CC---CCCCCEEEECSSSCEEEEC
T ss_pred             EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-c--------cc---cceeEEEEEcCCCCEEEEc
Confidence            4577777642    12  3677777888999999999999997521 0        00   1345799999999998777


Q ss_pred             C-cChHHHHhcc
Q 046002          144 D-LNWKDFVRVL  154 (160)
Q Consensus       144 D-vPW~~Fv~sV  154 (160)
                      + .=|++=+.++
T Consensus        74 sddDl~~A~e~~   85 (98)
T 1q1o_A           74 SDEDWNVAKEML   85 (98)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            6 6788887765

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=89.46  E-value=0.59  Score=34.90  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=33.4

Q ss_pred             ccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC
Q 046002           86 SLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD  144 (160)
Q Consensus        86 DL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD  144 (160)
                      ||+.--.|.+|....++-|.....                   .|-|.|.|||+.-+=|
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~DI-------------------aLNYrD~eGDLIrild   67 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQREDI-------------------ALNYRDAEGDLVRLLS   67 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCSSE-------------------EEEEECTTSCEEECCS
T ss_pred             ccccCCCHHHHHHHHHHHhcccce-------------------eeeeecCCCCEEEEcc
Confidence            678888999999999999996532                   5899999999986644

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=85.89  E-value=2.8  Score=30.09  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=41.8

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG  143 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG  143 (160)
                      .||.-.|...=--|.-..--++++|...+..+|+..                   .++|.|.|.|||-.-|-
T Consensus         9 lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------------------~~~ikY~DEenD~v~i~   61 (87)
T 2bkf_A            9 LNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------------TIQIKYLDEENEEVSIN   61 (87)
T ss_dssp             EEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------------SEEEEEECTTSCEEEEC
T ss_pred             EEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------------------ceEEEEEcCCCCEEEEe
Confidence            688999975444465555789999999999999885                   24799999999987653

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=85.46  E-value=3.5  Score=29.07  Aligned_cols=68  Identities=12%  Similarity=0.062  Sum_probs=52.0

Q ss_pred             eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEc-CCCCeEEcCCcChHHH
Q 046002           72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYED-MENDLLLAGDLNWKDF  150 (160)
Q Consensus        72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD-~EGD~MLVGDvPW~~F  150 (160)
                      |||+-.   +.-.|....=-+|.+|...|.+-+....+                 .=+|-|.| .+|.|++.+|.-++.=
T Consensus         8 VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~-----------------~~~LsYk~~~s~~~vi~~d~dl~~a   67 (83)
T 1oey_A            8 LKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLE-----------------HTKLSYRPRDSNELVPLSEDSMKDA   67 (83)
T ss_dssp             EEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGG-----------------GCCEEECCTTCSSCEECCTTTHHHH
T ss_pred             EEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcc-----------------eeEEEeeCCCCCCeeccChHHHHHH
Confidence            555555   67788888888999999999999887532                 11489999 6888889999999987


Q ss_pred             Hhc--cceeEe
Q 046002          151 VRV--LREFGY  159 (160)
Q Consensus       151 v~s--VKRLrI  159 (160)
                      ...  .-||++
T Consensus        68 w~~~~n~~LtL   78 (83)
T 1oey_A           68 WGQVKNYCLTL   78 (83)
T ss_dssp             HTTCBTTEEEE
T ss_pred             HHhccCCcEEE
Confidence            776  334544

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=83.99  E-value=3.2  Score=30.62  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             ceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCCcChHHH
Q 046002           71 PVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDF  150 (160)
Q Consensus        71 ~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGDvPW~~F  150 (160)
                      -+||.-.|...=--|.-..--.+++|...+..+|+...                   ++|.|.|.|||-.-|=-  +.+|
T Consensus        16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~-------------------~~IkY~DEenD~V~i~S--q~E~   74 (101)
T 1wj6_A           16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------------------IQIKYLDEENEEVSINS--QGEY   74 (101)
T ss_dssp             EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS-------------------BCCEEECTTSCEECCCS--HHHH
T ss_pred             EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc-------------------eEEEEecCCCCEEEEec--HHHH
Confidence            47899999765545755667899999999999998853                   46899999999876643  4454


Q ss_pred             Hhc
Q 046002          151 VRV  153 (160)
Q Consensus       151 v~s  153 (160)
                      -+.
T Consensus        75 eEA   77 (101)
T 1wj6_A           75 EEA   77 (101)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=83.52  E-value=3  Score=28.94  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=41.7

Q ss_pred             eccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC-cChHHHHhcc
Q 046002           85 ISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD-LNWKDFVRVL  154 (160)
Q Consensus        85 VDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD-vPW~~Fv~sV  154 (160)
                      |=...--+|++|...+.+-|..... .           +......|-|+|.|||+...++ .=|++=+.++
T Consensus         6 i~V~~~i~f~~L~~kI~~kl~~~~~-~-----------~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~   64 (77)
T 1pqs_A            6 LLVEKVWNFDDLIMAINSKISNTHN-N-----------NISPITKIKYQDEDGDFVVLGSDEDWNVAKEML   64 (77)
T ss_dssp             EECTTCCCSHHHHHHHHHHTTTTTS-S-----------CSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHccccc-c-----------cccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence            3345556899999999999986411 0           0023457999999999976665 7788887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.17
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.46
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	91.47
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	85.82

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00057  Score=47.56  Aligned_cols=65  Identities=12%  Similarity=0.189  Sum_probs=51.2

Q ss_pred             ceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC-CcChHH
Q 046002           71 PVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG-DLNWKD  149 (160)
Q Consensus        71 ~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG-DvPW~~  149 (160)
                      -|||...|..+=-+|-+....+|.+|..+|+..|++..                   +.|.|.|.||||.+++ |.=-++
T Consensus         6 tvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~~-------------------~~lkY~Ddd~e~v~l~~d~dl~E   66 (85)
T d2bkfa1           6 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------------------IQIKYLDEENEEVSINSQGEYEE   66 (85)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS-------------------EEEEEECTTSCEEEECSHHHHHH
T ss_pred             EEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCccc-------------------ceEEEEcCCCCEEEEecHHHHHH
Confidence            38999999776667888888999999999999998742                   4699999999998765 444555


Q ss_pred             HHhcc
Q 046002          150 FVRVL  154 (160)
Q Consensus       150 Fv~sV  154 (160)
                      ..+.+
T Consensus        67 ~~~~a   71 (85)
T d2bkfa1          67 ALKMA   71 (85)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.01  Score=40.01  Aligned_cols=71  Identities=6%  Similarity=0.051  Sum_probs=50.7

Q ss_pred             CCCceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC-CcC
Q 046002           68 VVPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG-DLN  146 (160)
Q Consensus        68 ~~~~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG-DvP  146 (160)
                      ..--|||+..+.  -|.+-|..--+|.+|..++++.|...                   .+.|-|+|.||||..+- |.=
T Consensus        11 ~~ikVKv~~~~D--~~~~~l~~~it~~dL~~kI~~rf~~~-------------------~~~lkY~Dedgd~v~i~sD~D   69 (85)
T d1ip9a_          11 KTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDTD-------------------NFKLQTKLFDGSGEEIKTDSQ   69 (85)
T ss_dssp             CCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTSS-------------------CEEEEECCSSSCCSCCCSHHH
T ss_pred             CCEEEEEEECCc--EEEEEeCCCCCHHHHHHHHHHHhCCC-------------------ceEEEEEcCCCCEEEEeCHHH
Confidence            334577887776  34555566688999999999999642                   26799999999997554 455


Q ss_pred             hHHHHhccceeEe
Q 046002          147 WKDFVRVLREFGY  159 (160)
Q Consensus       147 W~~Fv~sVKRLrI  159 (160)
                      +++=++...||.+
T Consensus        70 l~~ai~~~~kl~v   82 (85)
T d1ip9a_          70 VSNIIQAKLKISV   82 (85)
T ss_dssp             HHHHHHTTCCEEE
T ss_pred             HHHHHHhcCcEEE
Confidence            6666665555543

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.31  Score=33.17  Aligned_cols=44  Identities=23%  Similarity=0.369  Sum_probs=37.1

Q ss_pred             eeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC
Q 046002           84 RISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD  144 (160)
Q Consensus        84 KVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD  144 (160)
                      .+|.....+|++.+.-|++|-.+..                 -+++|.|.|..||++-+-.
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l~~-----------------~~f~i~Y~D~hgDLLPINN   60 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQIPG-----------------LDVLLGYTDAHGDLLPLTN   60 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTCTT-----------------CCCEEEEECTTSCEEECCS
T ss_pred             eeccccccCHHHHHHHHHHHcCCCC-----------------CcEEEEEecCCCCcccccC
Confidence            6777888999999999999987753                 3688999999999997653

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.63  Score=32.86  Aligned_cols=47  Identities=21%  Similarity=0.265  Sum_probs=37.3

Q ss_pred             ceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC
Q 046002           79 RSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD  144 (160)
Q Consensus        79 ~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD  144 (160)
                      ..|+=-=||+.--+|.+|..-.++-|.....                   +|-|.|.|||+.-+=|
T Consensus        19 rDI~veedl~~~P~ykdLl~lmr~~f~~~dI-------------------aLNYrD~eGDLIRlld   65 (105)
T d1oeyj_          19 KDIAVEEDLSSTPLLKDLLELTRREFQREDI-------------------ALNYRDAEGDLVRLLS   65 (105)
T ss_dssp             EEEEECSCTTCCCCHHHHHHHHHHHHCCSSE-------------------EEEEECTTSCEEECCS
T ss_pred             eeEEEccccccCccHHHHHHHHHHHhcccee-------------------EeeeecCCCCEEEEcc
Confidence            3455555889999999999999999988643                   5899999999875533