Citrus Sinensis ID: 046017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
Protein Sequence
GFPKIPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTFPVSDCFRHESVEDDWKCNMLNVTCDGKFKSEGYPVHSM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEccccccccccccccccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHccccccEEccccccccccccEEEccccccccccccccccccccEEEcccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccHHHcccccccEEccccccccccccccccccccccEEccccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEcccccccccccHHHHcccccccccccEEEccccccccccccHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccccccccccccHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccHcHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccEEEccccccccccHHHcccccccEEEccccccccccccccccHccccccccccccccccccccccHHccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHcccccccEEEcccccccccccHHHcccHccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
gfpkipscnidgstgierpcscglrlkncsslesfpssLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELelknssefEYLRVLRVEGAAIrelpesigkstllselelkncsELKLKSLRRIKMskcsnlkrfpkiascnKVGITGIKRLsstlrlkncssleslpsslcmLKSLRFLETIACKKLERLPESLGQLALLCELkmikcssfeslpsslcmlksltplaiidcKIFKrlpnelgnLKCLAALIVKGTAIREVPESLGYLSSLAKLELsnnnlkrtpeslyqlsslkylkpfennsdripeylrssptsipselrslnlsvdsgnslnldLNKLSEIVKEgwmkqsfhgqswiksmyfpgneipkwfrhqtfpvsdcfrhesveddwkcnmlnvtcdgkfksegypvhsm
Flexible Loop (DISEMBL)
gfpkipscnidgstgiERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIrelpesigkstllselelkncselklkslrrikmskcsnlkrfpkiascnkvgitgikrlsstlrlkNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTFPVSDCFRHESVEDDWKCNMLNVTCdgkfksegypvhsm
Low Complexity Region (SEG)
GFPKIPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERlldelgnletllvlRVEGAAIRelsqslgqlallselelknssefeYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCssleslpsslCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPEslyqlsslkylkPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTFPVSDCFRHESVEDDWKCNMLNVTCDGKFKSEGYPVHSM
Disordered region (IsUnstruct)
*************TGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLEL************Y*L**LKY**************************************LNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTFPVSDCFRHESVEDDWKCNMLNVTCDGKF**********
Disordered Region (DISOPRED)
GFPKIPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTFPVSDCFRHESVEDDWKCNMLNVTCDGKFKSEGYPV***
Disordered Region (DISEMBL)
GFPKIPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTFPVSDCFRHESVEDDWKCNMLNVTCDGKFKSEGYPVHSM
Disordered Region (DISPRO)
GFPKIPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTFPVSDCFRHESVEDDWKCNMLNVTCDGKFKSE*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GFPKIPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTFPVSDCFRHESVEDDWKCNMLNVTCDGKFKSEGYPVHSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	443	2.2.26 [Sep-21-2011]
Q96NW7	1537	Leucine-rich repeat-conta	yes	no	0.595	0.171	0.293	3e-16
P70587	1490	Leucine-rich repeat-conta	yes	no	0.595	0.177	0.290	1e-15
Q80TE7	1490	Leucine-rich repeat-conta	yes	no	0.595	0.177	0.290	1e-15
F1MCA7	1536	Leucine-rich repeat-conta	yes	no	0.613	0.177	0.292	3e-15
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.595	0.202	0.302	1e-14
Q4R6F0	863	Leucine-rich repeat and d	N/A	no	0.636	0.326	0.277	6e-14
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.663	0.158	0.257	3e-13
Q8C0R9	853	Leucine-rich repeat and d	no	no	0.634	0.329	0.261	5e-13
Q9V780	849	Protein lap1 OS=Drosophil	no	no	0.686	0.358	0.278	5e-13
A4D1F6	860	Leucine-rich repeat and d	no	no	0.469	0.241	0.310	2e-12

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 140/303 (46%), Gaps = 39/303 (12%)

Query: 29  CSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQ 88
            + +   P     L +L  L + D    E L    G L  L +L +    ++ L +S+ +
Sbjct: 124 VNPISKLPDGFTQLLNLTQLYLNDAF-LEFLPANFGRLVKLRILELRENHLKTLPKSMHK 182

Query: 89  LALLSELELKNS---------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSE 139
           LA L  L+L N+          + + LR L ++  A++ LP SIGK              
Sbjct: 183 LAQLERLDLGNNEFGELPEVLDQIQNLRELWMDNNALQVLPGSIGK-------------- 228

Query: 140 LKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLK 199
             LK L  + MSK        +I + + + I+G + L   L   N   L+ LP S+ +LK
Sbjct: 229 --LKMLVYLDMSKN-------RIETVD-MDISGCEALEDLLLSSNM--LQQLPDSIGLLK 276

Query: 200 SLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI 259
            L  L+ +   +L  LP ++G L+LL E     C+  ESLPS++  L SL  LA+ D   
Sbjct: 277 KLTTLK-VDDNQLTMLPNTIGNLSLLEEFD-CSCNELESLPSTIGYLHSLRTLAV-DENF 333

Query: 260 FKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSL 319
              LP E+G+ K +  + ++   +  +PE +G +  L  L LS+N LK  P S  +L  L
Sbjct: 334 LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSDNRLKNLPFSFTKLKEL 393

Query: 320 KYL 322
             L
Sbjct: 394 AAL 396

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.
Homo sapiens (taxid: 9606)

>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 139/303 (45%), Gaps = 39/303 (12%)

Query: 29  CSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQ 88
            + +   P     L +L  L + D    E L    G L  L +L +    ++ L +S+ +
Sbjct: 124 VNPISKLPDGFTQLLNLTQLYLNDAF-LEFLPANFGRLVKLRILELRENHLKTLPKSMHK 182

Query: 89  LALLSELELKNS---------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSE 139
           LA L  L+L N+          + + LR L ++  A++ LP SIGK              
Sbjct: 183 LAQLERLDLGNNEFSELPEVLDQIQNLRELWMDNNALQVLPGSIGK-------------- 228

Query: 140 LKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLK 199
             LK L  + MSK        +I + + + I+G + L   L   N   L+ LP S+ +LK
Sbjct: 229 --LKMLVYLDMSKN-------RIETVD-MDISGCEALEDLLLSSNM--LQQLPDSIGLLK 276

Query: 200 SLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI 259
            L  L+ +   +L  LP ++G L+LL E     C+  ESLP ++  L SL  LA+ D   
Sbjct: 277 KLTTLK-VDDNQLTMLPNTIGNLSLLEEFD-CSCNELESLPPTIGYLHSLRTLAV-DENF 333

Query: 260 FKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSL 319
              LP E+G+ K +  + ++   +  +PE +G +  L  L LS+N LK  P S  +L  L
Sbjct: 334 LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSDNRLKNLPFSFTKLKEL 393

Query: 320 KYL 322
             L
Sbjct: 394 AAL 396

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Rattus norvegicus (taxid: 10116)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 139/303 (45%), Gaps = 39/303 (12%)

Query: 29  CSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQ 88
            + +   P     L +L  L + D    E L    G L  L +L +    ++ L +S+ +
Sbjct: 124 VNPISKLPDGFTQLLNLTQLYLNDAF-LEFLPANFGRLVKLRILELRENHLKTLPKSMHK 182

Query: 89  LALLSELELKNS---------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSE 139
           LA L  L+L N+          + + LR L ++  A++ LP SIGK              
Sbjct: 183 LAQLERLDLGNNEFSELPEVLDQIQNLRELWMDNNALQVLPGSIGK-------------- 228

Query: 140 LKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLK 199
             LK L  + MSK        +I + + + I+G + L   L   N   L+ LP S+ +LK
Sbjct: 229 --LKMLVYLDMSKN-------RIETVD-MDISGCEALEDLLLSSNM--LQQLPDSIGLLK 276

Query: 200 SLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI 259
            L  L+ +   +L  LP ++G L+LL E     C+  ESLP ++  L SL  LA+ D   
Sbjct: 277 KLTTLK-VDDNQLTMLPNTIGNLSLLEEFD-CSCNELESLPPTIGYLHSLRTLAV-DENF 333

Query: 260 FKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSL 319
              LP E+G+ K +  + ++   +  +PE +G +  L  L LS+N LK  P S  +L  L
Sbjct: 334 LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSDNRLKNLPFSFTKLKEL 393

Query: 320 KYL 322
             L
Sbjct: 394 AAL 396

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 140/294 (47%), Gaps = 22/294 (7%)

Query: 29  CSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQ 88
            + +   P     L +L  L + D    E L    G L  L +L +    ++ L +S+ +
Sbjct: 124 VNPISKLPDGFTQLLNLTQLYLNDAF-LEFLPANFGRLAKLRILELRENHLKTLPKSMHK 182

Query: 89  LALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRI 148
           LA L  L+L N+ EF              ELPE + +   L EL + N +   L  + ++
Sbjct: 183 LAQLERLDLGNN-EFS-------------ELPEVLDQIQNLRELWMDNNALQVLPGVWKL 228

Query: 149 KMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIA 208
           KM    ++ +  +I + + + I+G + L   L   N   L+ LP S+ +LK L  L+ + 
Sbjct: 229 KMLVYLDMSKN-RIETVD-MDISGCEALEDLLLSSNM--LQQLPDSIGLLKKLTTLK-VD 283

Query: 209 CKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELG 268
             +L  LP ++G L+LL E     C+  ESLPS++  L SL  LA+ D      LP E+G
Sbjct: 284 DNQLTILPNTIGNLSLLEEFD-CSCNELESLPSTIGYLHSLRTLAV-DENFLPELPREIG 341

Query: 269 NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYL 322
           + K +  + ++   +  +PE +G +  L  L LS+N LK  P S  +L  L  L
Sbjct: 342 SCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSDNRLKNLPFSFTKLKELAAL 395

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 140/304 (46%), Gaps = 40/304 (13%)

Query: 24   LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
            L L NC SL + PS++  L  L  L++ +C   E L  ++ NL +L  L + G +     
Sbjct: 801  LILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCS----- 854

Query: 84   QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCS----- 138
             SL    L+S            +  L +E  AI E+P +IG    L  LE+K C+     
Sbjct: 855  -SLRSFPLIST----------NIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVL 903

Query: 139  --ELKLKSLRRIKMSKCSNLKRFPKIASCNK------VGITGIKRLSST-----LRLKNC 185
              ++ L SL  + +S CS+L+ FP I+   K        I  I  LS       L+L NC
Sbjct: 904  PTDVNLSSLETLDLSGCSSLRSFPLISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNC 963

Query: 186  SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCM 245
             SL +LP+++  L+ L   E   C  LE LP  +  L+ L  L +  CSS  + P    +
Sbjct: 964  KSLVTLPTTIGNLQKLVSFEMKECTGLEVLPIDV-NLSSLMILDLSGCSSLRTFP----L 1018

Query: 246  LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNN 305
            + +      ++    + +P+ +GNL  L  L +K     EV  +   LSSL  L+LS  +
Sbjct: 1019 ISTNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKECTGLEVLPTDVNLSSLMILDLSGCS 1078

Query: 306  LKRT 309
              RT
Sbjct: 1079 SLRT 1082

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4R6F0|LRRD1_MACFA Leucine-rich repeat and death domain-containing protein 1 OS=Macaca fascicularis GN=LRRD1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 146/331 (44%), Gaps = 49/331 (14%)

Query: 30  SSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQL 89
           + L   P ++  L +LR L + +     ++ D + +L  +  L   G  I  +   +   
Sbjct: 408 NKLTELPKNIHKLNNLRKLHV-NRNNMVKITDSISHLNNICSLEFSGNIIAGIPIEIKNC 466

Query: 90  ALLSELELKNSSEFEY----------LRVLRVEGAAIRELPESIGKSTLLSELELKN--- 136
             + ++EL N ++  Y          L  L V G  I E+P  I  S  L  LEL     
Sbjct: 467 QKIIKIEL-NYNKIMYFPLGLCALDSLYYLSVNGNYISEIPADISFSKQLLHLELSENKL 525

Query: 137 -------CSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLE 189
                  CS + LK L   K    + +K+ P  AS + +       +S  + +  C+  E
Sbjct: 526 LIFSEHFCSLINLKYLDLGK----NQIKKIP--ASISNM-------ISLHVLILCCNKFE 572

Query: 190 SLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES-----LPSSLC 244
           + P  LC L++LR L+ ++  +L+++   +      C LK I+  +F S      P  LC
Sbjct: 573 TFPRELCTLENLRVLD-LSENQLQKISSDI------CNLKRIQKLNFSSNQFIHFPIELC 625

Query: 245 MLKSLTPLAI--IDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELS 302
            L+SL  L I  I  +   RLP EL N+  L  L +   AIRE+P ++G L +L  L   
Sbjct: 626 QLQSLEQLNISQIKGRKLTRLPGELSNMTQLKELDISNNAIREIPRNIGELRNLVSLHAY 685

Query: 303 NNNLKRTPESLYQLSSLKYLKPFENNSDRIP 333
           NN +   P SL  L+ L+ L    NN   +P
Sbjct: 686 NNQISYIPPSLLSLNDLQQLNLSGNNLTALP 716

Macaca fascicularis (taxid: 9541)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 32/326 (9%)

Query: 28  NCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLG 87
           + + +   P +   L  LR L + D  +  RL  ++ N E L+ L V    I ++   + 
Sbjct: 45  DANHIRDLPKNFFRLHRLRKLGLSD-NEIGRLPPDIQNFENLVELDVSRNDIPDIPDDIK 103

Query: 88  QLALLSELELKNS---------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCS 138
            L  L   +  ++         S+ + L VL +   ++  LP   G  T L  LEL+   
Sbjct: 104 HLQSLQVADFSSNPIPKLPSGFSQLKNLTVLGLNDMSLTTLPADFGSLTQLESLELR--- 160

Query: 139 ELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLK--------NCSSLES 190
           E  LK L    +S+ + LKR         +G   I+ L   L           + + L+ 
Sbjct: 161 ENLLKHLPE-TISQLTKLKRL-------DLGDNEIEDLPPYLGYLPGLHELWLDHNQLQR 212

Query: 191 LPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLT 250
           LP  L +L  L +L+ ++  +LE LP  +  L  L +L + + +  E+LP  +  L  LT
Sbjct: 213 LPPELGLLTKLTYLD-VSENRLEELPNEISGLVSLTDLDLAQ-NLLEALPDGIAKLSRLT 270

Query: 251 PLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP 310
            L + D    +RL + LGN + +  LI+    + E+P S+G ++ L  L +  N L+  P
Sbjct: 271 ILKL-DQNRLQRLNDTLGNCENMQELILTENFLSELPASIGQMTKLNNLNVDRNALEYLP 329

Query: 311 ESLYQLSSLKYLKPFENNSDRIPEYL 336
             + Q ++L  L   +N   ++P  L
Sbjct: 330 LEIGQCANLGVLSLRDNKLKKLPPEL 355

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|Q8C0R9|LRRD1_MOUSE Leucine-rich repeat and death domain-containing protein 1 OS=Mus musculus GN=Lrrd1 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 63/344 (18%)

Query: 30  SSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQL 89
           +++E  P  +  LK+LR L + +  K   + +E+ +L  + +L   G  I  +   +   
Sbjct: 399 NNIEELPKKIRKLKNLRQLHV-NRNKMITMTEEISHLSNIHILEFSGNQITHVPIEIKNC 457

Query: 90  ALLSELELKNSSEFEYLRV----------LRVEGAAIRELPESIGKSTLLSELELKN--- 136
             ++ +EL N +   Y  V          L   G  I E+P  +  S  L  LEL     
Sbjct: 458 RKITRVEL-NYNNIMYFPVGLCALQSLDYLSFNGNYISEIPVDMSFSKQLLHLELNRNKL 516

Query: 137 -------CSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLE 189
                  CS   L +L  + ++K     +   I SC    I+ +  L   +   N    E
Sbjct: 517 TVFSKHLCS---LTNLEYLDLAK----NQIMTIPSC----ISAMVSLHVLILSDN--KFE 563

Query: 190 SLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSL 249
           S P  LC LK+LR L+ I+  KL+++P  + +L  + +L +   + F + P  LC L++L
Sbjct: 564 SFPKELCSLKNLRVLD-ISENKLQKIPLEISKLKRIQKLNL-SNNIFTNFPVELCQLQTL 621

Query: 250 TPLAI--IDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLA---------- 297
             L I     K   RLP E+ ++  L  L +   AI+++P+++G L SL           
Sbjct: 622 EELNISQTSGKKLTRLPEEVSHMTQLKILNISNNAIKDIPKNIGELRSLVSFYASNNQIS 681

Query: 298 -------------KLELSNNNLKRTPESLYQLSSLKYLKPFENN 328
                         L+L  NN+   P  +Y+LSSLK +  F++N
Sbjct: 682 SLPSSFLSLEVLQSLDLRGNNMTALPSGIYKLSSLKEIN-FDDN 724

Mus musculus (taxid: 10090)

>sp|Q9V780|LAP1_DROME Protein lap1 OS=Drosophila melanogaster GN=Lap1 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 165/359 (45%), Gaps = 55/359 (15%)

Query: 23  GLRL--KNCSSLESFPSSLCVLKSLRSLQI----------------------IDCKKFER 58
           GLR+   N ++LES P ++  L+ L+ L +                      + C   +R
Sbjct: 64  GLRVLHVNSNNLESIPQAIGSLRQLQHLDLNRNLIVNVPEEIKSCKHLTHLDLSCNSLQR 123

Query: 59  LLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELEL---------KNSSEFEYLRVL 109
           L D + +L +L  L +    +  L  + G+L  L  LEL         K+      L+ L
Sbjct: 124 LPDAITSLISLQELLLNETYLEFLPANFGRLVNLRILELRLNNLMTLPKSMVRLINLQRL 183

Query: 110 RVEGAAIRELPESIGKSTLLSELELKNCSEL--KLKSLRRI--KMSKCSNLKRFPKIASC 165
            + G    ELPE +G        ELK+  EL      +RR+   + K  +L+ F    + 
Sbjct: 184 DIGGNEFTELPEVVG--------ELKSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNL 235

Query: 166 NKVGITGIKRLSSTLRLKNCS-SLESLPSSLCMLKSLRFLETIACKK--LERLPESLGQL 222
                + +    +   L  CS SLE+ P S+ MLKSL    T  C+   L  LP+S+  L
Sbjct: 236 LDTLPSELSNWRNVEVLSICSNSLEAFPFSVGMLKSLV---TFKCESNGLTELPDSISYL 292

Query: 223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTA 282
             L EL ++  +    LPS++ ML+SL  L   D ++ ++LP+EL + + L+ L V    
Sbjct: 293 EQLEEL-VLSHNKLIRLPSTIGMLRSLRFLFADDNQL-RQLPDELCSCQQLSVLSVANNQ 350

Query: 283 IREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDR-IP-EYLRSS 339
           +  +P+++G LS +  L + NN +   P S+  L +L  +   +N S   +P +YL +S
Sbjct: 351 LSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWLSDNQSQPLVPLQYLDAS 409

May have a role in assembling adherens junctions.

Drosophila melanogaster (taxid: 7227)

>sp|A4D1F6|LRRD1_HUMAN Leucine-rich repeat and death domain-containing protein 1 OS=Homo sapiens GN=LRRD1 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 113/245 (46%), Gaps = 37/245 (15%)

Query: 106 LRVLRVEGAAIRELPESIGKSTLLSELELKN----------CSELKLKSLRRIKMSKCSN 155
           L  L V G  I E+P  I  S  L  LEL            CS + LK L   K    + 
Sbjct: 489 LYYLSVNGNYISEIPVDISFSKQLLHLELSENKLLIFSEHFCSLINLKYLDLGK----NQ 544

Query: 156 LKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERL 215
           +K+ P  AS + +       +S  + +  C+  E+ P  LC L++L+ L+ ++  +L+++
Sbjct: 545 IKKIP--ASISNM-------ISLHVLILCCNKFETFPRELCTLENLQVLD-LSENQLQKI 594

Query: 216 PESLGQLALLCELKMIKCSSFES-----LPSSLCMLKSLTPLAI--IDCKIFKRLPNELG 268
              +      C LK I+  +F S      P  LC L+SL  L I  I  +   RLP EL 
Sbjct: 595 SSDI------CNLKGIQKLNFSSNQFIHFPIELCQLQSLEQLNISQIKGRKLTRLPGELS 648

Query: 269 NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENN 328
           N+  L  L +   AIRE+P ++G L +L  L   NN +   P SL  L+ L+ L    NN
Sbjct: 649 NMTQLKELDISNNAIREIPRNIGELRNLVSLHAYNNQISYLPPSLLSLNDLQQLNLSGNN 708

Query: 329 SDRIP 333
              +P
Sbjct: 709 LTALP 713

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
147802252	1441	hypothetical protein VITISV_020931 [Viti	0.693	0.213	0.345	5e-32
224094841	491	predicted protein [Populus trichocarpa]	0.679	0.613	0.340	5e-31
168042657	336	predicted protein [Physcomitrella patens	0.654	0.863	0.351	9e-30
359486100	1535	PREDICTED: TMV resistance protein N-like	0.613	0.177	0.308	1e-29
296089455	770	unnamed protein product [Vitis vinifera]	0.708	0.407	0.334	3e-29
28555894	1262	NBS-LRR disease resistance protein homol	0.674	0.236	0.356	3e-29
359489072	671	PREDICTED: protein SUPPRESSOR OF npr1-1,	0.837	0.552	0.310	5e-29
224284598	1071	unknown [Picea sitchensis]	0.627	0.259	0.316	6e-29
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.839	0.259	0.291	1e-28
168030408	539	predicted protein [Physcomitrella patens	0.618	0.508	0.347	3e-28

>gi|147802252|emb|CAN68265.1| hypothetical protein VITISV_020931 [Vitis vinifera]

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 178/347 (51%), Gaps = 40/347 (11%)

Query: 24   LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
            LRL N + ++  PSS+  L SL  L + +C  FE+     GN++ L  L + G  I+EL 
Sbjct: 787  LRL-NGTGIKELPSSIGDLTSLEILBLSECSNFEKFPGIHGNMKFLRELHLNGTRIKELP 845

Query: 84   QSLGQLALLSELELKNSSEF----------EYLRVLRVEGAAIRELPESIGKSTLLSELE 133
             S+G L  L  L L   S+F          E+LR L +  + I+ELP +IG    L EL 
Sbjct: 846  SSIGSLTSLEILNLSKCSKFEKFPDIFANMEHLRKLYLSNSGIKELPSNIGNLKHLKELS 905

Query: 134  LKNC-------SELKLKSLRRIKMSKCSNLKRFPKIA---------SCNKVGIT------ 171
            L          S   L++L+ + +  CSN ++FP+I             +  IT      
Sbjct: 906  LDKTFIKELPKSIWSLEALQTLSLRGCSNFEKFPEIQRNMGSLLDLEIEETAITELPLSI 965

Query: 172  -GIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKM 230
              + RL+S L L+NC +L SLPSS+C LKSL+ L    C  LE  PE L  +  L  L++
Sbjct: 966  GHLTRLNS-LNLENCKNLRSLPSSICRLKSLKHLSLNCCSNLEAFPEILEDMEHLRSLEL 1024

Query: 231  IKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG-TAIREVPES 289
             + ++   LPSS+  L+SL  L +I+C   + LPN +GNL CL  L+V+  + +  +P++
Sbjct: 1025 -RGTAITGLPSSIEHLRSLQWLKLINCYNLEALPNSIGNLTCLTTLVVRNCSKLHNLPDN 1083

Query: 290  LGYLS-SLAKLELSNNNLKR--TPESLYQLSSLKYLKPFENNSDRIP 333
            L  L   L  L+L   NL     P  ++ LSSL++L   EN+   IP
Sbjct: 1084 LRSLQCCLTTLDLGGCNLMEGGIPRDIWGLSSLEFLDVSENHIRCIP 1130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094841|ref|XP_002334784.1| predicted protein [Populus trichocarpa] gi|222874625|gb|EEF11756.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 159/341 (46%), Gaps = 40/341 (11%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIREL 82
           L L  CS L S P S+  LKSL SL +  C     L D +G L++L  L + G + +  L
Sbjct: 115 LHLSGCSGLASLPDSIGALKSLESLHLTGCSGLASLPDSIGALKSLESLHLYGCSGLASL 174

Query: 83  SQSLGQLALLSELELK----------NSSEFEYLRVLRVEG-AAIRELPESIGKSTLLSE 131
             S+G L  L  L+LK          N    + L  L + G + +  LP+SIG    L  
Sbjct: 175 PDSIGALKSLQSLDLKGCSGLASLPDNIDALKSLDWLHLYGCSGLASLPDSIGALKSLDS 234

Query: 132 LELKNCSELK--------LKSLRRIKMSKCSNLKRFP------------KIASCNKVG-- 169
           L L  CS L         LKS+  + +  CS L   P             ++ C+ +   
Sbjct: 235 LHLYGCSGLASLPDSIGALKSIESLYLYGCSGLASLPDNIGALKSLEWLHLSGCSGLASL 294

Query: 170 ---ITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLC 226
              I  +K L S L L  CS L SLP S+  LKSL +L    C  L  LP+S+G L  L 
Sbjct: 295 PDSIGALKSLKS-LHLSGCSGLASLPDSIGALKSLEWLHLYGCSGLASLPDSIGALKSLE 353

Query: 227 ELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG-TAIRE 285
            L +  CS   SLP S+  LKSL  L +  C     LP+ +G LK L +L + G + +  
Sbjct: 354 SLHLSGCSGLASLPDSIGALKSLEWLHLYGCSGLASLPDSIGALKSLKSLHLSGCSGLAS 413

Query: 286 VPESLGYLSSLAKLELSN-NNLKRTPESLYQLSSLKYLKPF 325
           +P+S+G L SL  L L   + L   P+S+  L SLK L  +
Sbjct: 414 LPDSIGALKSLEWLHLYGCSGLASLPDSIGALKSLKSLHLY 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168042657|ref|XP_001773804.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674919|gb|EDQ61421.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 160/327 (48%), Gaps = 37/327 (11%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIREL 82
           L LK+C  L S P+S+  L  L+++ I  C     L +ELGNL +L  L + G +++  L
Sbjct: 15  LNLKDCKQLHSLPTSIGNLLYLKNINIGRCSSLTSLPNELGNLTSLTTLNIGGCSSMTSL 74

Query: 83  SQSLGQLALLSEL-------------ELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLL 129
              LG L  L+ L             EL N +    L V   E +++  LP  +G  T L
Sbjct: 75  PNELGNLTSLTTLIMWRCSSLTSLPNELGNLTSLTTLDV--SECSSLTSLPNELGNLTSL 132

Query: 130 SELELKN---CSEL--------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS 178
           + L + +   CS L         L SL  + ++KCS+L   P     N++G   +  L +
Sbjct: 133 TTLNISDVNECSSLTLLPNELANLTSLTTLDVNKCSSLTSLP-----NELG--NLTSL-T 184

Query: 179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES 238
           TL +  CSS+ SLP+ L  L SL  L    C  +  LP  LG L  L  LK+  CSS  S
Sbjct: 185 TLNIGGCSSMTSLPNELGNLTSLTTLNIGGCSSMTSLPNELGNLTSLTTLKIGGCSSLTS 244

Query: 239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG-TAIREVPESLGYLSSLA 297
           LP+ L  L SLT L I  C     LPNELGNL  L  L + G +++  +P  LG L+SL 
Sbjct: 245 LPNELGNLTSLTTLNIGGCSSMTSLPNELGNLTSLTTLNISGCSSLTSLPNELGNLTSLT 304

Query: 298 KLELSN-NNLKRTPESLYQLSSLKYLK 323
            L +S  ++L   P  L  L+SL  L 
Sbjct: 305 TLNISGCSSLTSLPNELGNLTSLTTLN 331

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486100|ref|XP_002274578.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 165/334 (49%), Gaps = 62/334 (18%)

Query: 24   LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
            L L+ C  L++ P S+  L+SL SL + DC KF +  ++ GN+++L+ L +   AI++L 
Sbjct: 780  LSLRFCDQLKNLPDSIGYLESLESLDLSDCSKFVKFPEKGGNMKSLMKLDLRFTAIKDLP 839

Query: 84   QSLGQLALLSELELKNSSEFEY----------LRVLRVEGAAIRELPESIGKSTLLSELE 133
             S+G L  L  L L   S+FE           LR L +   AI++LP+SIG         
Sbjct: 840  DSIGDLESLESLNLSFCSKFEKFPEKGGNMKSLRHLCLRNTAIKDLPDSIG--------- 890

Query: 134  LKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLK-NCSSLESLP 192
                    L+SL  + +S CS  ++FP+              + S + L    ++++ LP
Sbjct: 891  -------DLESLMFLNLSGCSKFEKFPEKGG----------NMKSLMELDLRYTAIKDLP 933

Query: 193  SSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPL 252
             S+  L+SLR L+   C K E+ PE  G +  L EL + K ++ + LP S+  L+SL  L
Sbjct: 934  DSIGDLESLRLLDLSGCSKFEKFPEKGGNMKSLVELDL-KNTAIKDLPDSIGDLESLESL 992

Query: 253  AIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL---------------------- 290
             + DC  F++ P + GN+K L  L +  TAI+++P+S+                      
Sbjct: 993  DLSDCSKFEKFPEKGGNMKSLKWLYLTNTAIKDLPDSIGDLESLLSLHLSDCSKFEKFPE 1052

Query: 291  --GYLSSLAKLELSNNNLKRTPESLYQLSSLKYL 322
              G + SL KL+L    +K  P+S+  L SL+ L
Sbjct: 1053 KGGNMKSLMKLDLRYTAIKDLPDSIGDLESLRLL 1086

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089455|emb|CBI39274.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 192/395 (48%), Gaps = 81/395 (20%)

Query: 23  GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL 82
           GL L+  S ++  PSS+  L+SL  L +  C KFE+  +  GN++ LL L ++  AI+EL
Sbjct: 161 GLHLRE-SGIKELPSSIGYLESLEILDLSCCSKFEKFPEIQGNMKCLLNLFLDETAIKEL 219

Query: 83  SQSLGQLALLSELELKNSSEFE----------YLRVLRVEGAAIRELPESIGKSTLLSEL 132
             S+G L  L  L L+  S+FE           LR L + G+ I+ELP SIG    L EL
Sbjct: 220 PNSIGSLTSLEMLSLRECSKFEKFSDVFTNMGRLRELCLYGSGIKELPGSIGYLESLEEL 279

Query: 133 ELKNCSEL-------------------------------KLKSLRRIKMSKCSNLKRFPK 161
            L+ CS                                 +L++L  + +S CSNL+RFP+
Sbjct: 280 NLRYCSNFEKFPEIQGNMKCLKMLCLEDTAIKELPNGIGRLQALEILDLSGCSNLERFPE 339

Query: 162 IAS--CNKVGI----TGIKRLSST---------LRLKNCSSLESLPSSLCMLKSLRFLET 206
           I     N  G+    T I+ L  +         L L+NC +L+SLP+S+C LKSL+ L  
Sbjct: 340 IQKNMGNLWGLFLDETAIRGLPYSVGHLTRLERLDLENCRNLKSLPNSICGLKSLKGLSL 399

Query: 207 IACKKLE---RLPESLGQLA--LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK 261
             C  LE    + E + QL    LCE      +    LPSS+  L+ L  L +I+C+   
Sbjct: 400 NGCSNLEAFLEITEDMEQLEGLFLCE------TGISELPSSIEHLRGLKSLELINCENLV 453

Query: 262 RLPNELGNLKCLAALIVKGTA-IREVPESL-GYLSSLAKLELSNNNL--KRTPESLYQLS 317
            LPN +GNL CL +L V+    +  +P++L      L  L+L   NL  +  P  L+ LS
Sbjct: 454 ALPNSIGNLTCLTSLHVRNCPKLHNLPDNLRSQQCILTSLDLGGCNLMEEEIPSDLWCLS 513

Query: 318 SLKYLKPFENNSDRIPEYLRSSPTSIPS--ELRSL 350
           SL++L   EN       ++R  PT I    +LR+L
Sbjct: 514 SLEFLNISEN-------HMRCIPTGITHLCKLRTL 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28555894|emb|CAD45029.1| NBS-LRR disease resistance protein homologue [Hordeum vulgare]

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 175/337 (51%), Gaps = 38/337 (11%)

Query: 24   LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIREL 82
            L L NC  LES P S   LK+L++L +++CKK E L + LG L+ L  L       +  +
Sbjct: 783  LNLSNCFELESLPESFGSLKNLQTLNLVECKKLESLPESLGGLKNLQTLDFSVCHKLESV 842

Query: 83   SQSLGQLALLSELEL----------KNSSEFEYLRVLRVEG-AAIRELPESIGKSTLLSE 131
             +SLG L  L  L+L          K+    + L+ L + G   +  LPES+G    L  
Sbjct: 843  PESLGGLNNLQTLKLSVCDNLVSLLKSLGSLKNLQTLDLSGCKKLESLPESLGSLENLQI 902

Query: 132  LELKNCSEL--------KLKSLRRIKMSKCSNLKRFPK----IASCNKVGITGIKRLSS- 178
            L L NC +L        +LK+L+ + +S C+ L   PK    + +  ++ ++G  +L S 
Sbjct: 903  LNLSNCFKLESLPESLGRLKNLQTLNISWCTELVFLPKNLGNLKNLPRLDLSGCMKLESL 962

Query: 179  -----------TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCE 227
                       TL L  C  LESLP SL  L++L+ L+ + C KLE LPESLG L  L  
Sbjct: 963  PDSLGSLENLETLNLSKCFKLESLPESLGGLQNLQTLDLLVCHKLESLPESLGGLKNLQT 1022

Query: 228  LKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG-TAIREV 286
            L++  C   ESLP SL  LK+L  L +  C   + LP  LG+LK L  L ++    ++ +
Sbjct: 1023 LQLSFCHKLESLPESLGGLKNLQTLTLSVCDKLESLPESLGSLKNLHTLKLQVCYKLKSL 1082

Query: 287  PESLGYLSSLAKLELSN-NNLKRTPESLYQLSSLKYL 322
            PESLG + +L  L LS  +NL+  PES+  L +L+ L
Sbjct: 1083 PESLGSIKNLHTLNLSVCHNLESIPESVGSLENLQIL 1119

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489072|ref|XP_002262840.2| PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Vitis vinifera]

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 215/454 (47%), Gaps = 83/454 (18%)

Query: 30  SSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQL 89
           + ++  P S+  L+SL SL +  C  FE+     G ++ L  L +EG AI+EL  ++G L
Sbjct: 12  TGIKELPGSIGYLESLESLNLSGCSDFEKFPTIQGTMKCLKNLILEGTAIKELPNNIGYL 71

Query: 90  ALLSELELKNSSEFEY----------LRVLRVEGAAIRELPESIGKSTLLSELELKNCS- 138
             L  + L NSS+FE           L+ L +E  AI+ELP SIG    L  L L+N S 
Sbjct: 72  KSLETIYLTNSSKFEKFPEILGNMKCLKELYLENTAIKELPNSIGCLEALQNLSLQNTSI 131

Query: 139 -EL-----KLKSLRRIKMSKCSNLKRFPKIA----SCNKVGITG--IKRLSSTLR----- 181
            EL      LK+L  + +  CSNL++FP+I     S   +  +G  IK L  ++R     
Sbjct: 132 KELPNSIGSLKALEVLFVDDCSNLEKFPEIQRNMESLKNLSASGTAIKELPYSIRHLIGL 191

Query: 182 ----LKNCSSLESLPSSLCMLKSLRFLETIACKKLE-----------------------R 214
               L+NC +L SLPSS+  LK L  L    C  LE                        
Sbjct: 192 SRLNLENCKNLRSLPSSIHGLKYLENLALNGCSNLEAFSEIEVDVEHSRHLHLRGMGITE 251

Query: 215 LPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLK-CL 273
           LP S+ +L  L  L++I C + E+LP+S+  L  L+ L + +C    +LP+ L +L+ CL
Sbjct: 252 LPSSIERLKGLKSLELINCENLETLPNSIGNLTCLSRLFVRNCSKLHKLPDNLRSLQCCL 311

Query: 274 AALIVKGTAIRE--VPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDR 331
             L + G  + E  +P  L  LSSL  L++S N+++  P  + QLS L +L    N+  +
Sbjct: 312 TELDLAGCNLMEGAIPSDLWCLSSLESLDVSENHIRCIPVGIIQLSKLIFLG--MNHCPK 369

Query: 332 IPEYLRSSPTSIPSELRSLN---------LSVDSGNSLNLDLNKLSEIVKEGWM-KQSFH 381
           + E      + +PS LR +          LS D  + L   L    ++  E    ++ F+
Sbjct: 370 LEEI-----SELPSSLRMIQAHGCPCLKALSCDPTDVLWFSLLNYFKLDTENLKCERDFY 424

Query: 382 GQSWIKSMYFPG-NEIPKW-------FRHQTFPV 407
                 S+  PG N IP+W       FR +T+ +
Sbjct: 425 KTHCNISVVIPGSNGIPEWVDSLWLPFRCRTYNI 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224284598|gb|ACN40032.1| unknown [Picea sitchensis]

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 154/313 (49%), Gaps = 35/313 (11%)

Query: 24   LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIREL 82
            L L  CS+L++ P S+  L  L++L +I+C   + L D +GNL  L  L +   + ++ L
Sbjct: 738  LALGWCSTLQTLPDSVGNLTGLQTLDLIECSTLQTLPDSVGNLTGLQTLYLSRCSTLQTL 797

Query: 83   SQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELK- 141
              S+G L  L  L L   S              ++ LP+S+G  T L  L L  CS L+ 
Sbjct: 798  PDSVGNLTGLQTLYLSGCS-------------TLQTLPDSVGNLTGLQTLYLSGCSTLQT 844

Query: 142  -------LKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSS 194
                   L  L+ + + +CS L+  P +       +  +K L  TL L  CS+L++LP S
Sbjct: 845  LPDSVGNLTGLQTLNLDRCSTLQTLPDL-------VGNLKSLQ-TLDLDGCSTLQTLPDS 896

Query: 195  LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAI 254
            +  L  L+ L    C  L+ LP+S G L  L  L +I CS+ ++LP S   L  L  L +
Sbjct: 897  VGNLTGLQTLNLSGCSTLQTLPDSFGNLTGLQTLNLIGCSTLQTLPDSFGNLTGLQTLNL 956

Query: 255  IDCKIFKRLPNELGNLKCLAALIVKG----TAIREVPESLGYLSSLAKLELSN-NNLKRT 309
            I C   + LP+ +GNL  L  L + G      ++ +P+ +G L+ L  L L   + L+  
Sbjct: 957  IGCSTLQTLPDSVGNLTGLQILYLGGCFTLQTLQTLPDLVGTLTGLQTLYLDGYSTLQML 1016

Query: 310  PESLYQLSSLKYL 322
            P+S++ L  LK L
Sbjct: 1017 PDSIWNLMGLKRL 1029

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 144/494 (29%), Positives = 211/494 (42%), Gaps = 122/494 (24%)

Query: 24   LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGN--LETL------------ 69
            L L+ C SL  FPSS+  L  L  L +  CK+   L   + +  LETL            
Sbjct: 668  LNLQFCKSLVKFPSSIQHLDKLVDLDLRGCKRLINLPSRINSSCLETLNLSGCANLKKCP 727

Query: 70   ------LVLRVEGAAIRELSQSLGQLALLSELELKNSS---------------------- 101
                    L +   A+ EL QS+G+L+ L  L LKN                        
Sbjct: 728  ETAGKLTYLNLNETAVEELPQSIGELSGLVTLNLKNCKLVLNLPENIYLLKSLLIVDISG 787

Query: 102  --------EFEY-LRVLRVEGAAIRELPESIGKSTLLSELELKNCSELK--------LKS 144
                    +F + +R L + G AI ELP SIG    L  L+L  C+ LK        L  
Sbjct: 788  CSSISRFPDFSWNIRYLYLNGTAIEELPSSIGGLRELIYLDLVGCNRLKNLPSAVSKLGC 847

Query: 145  LRRIKMSKCSNLKRFPKIASCNK---VGITGIKRLSST---------LRLKNCSSLESLP 192
            L ++ +S CS++  FPK++   +   +  T I+ + S+         L L+NC   E LP
Sbjct: 848  LEKLDLSGCSSITEFPKVSRNIRELYLDGTAIREIPSSIECLCELNELHLRNCKQFEILP 907

Query: 193  SSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPL 252
            SS+C LK LR L    C +    PE L  +  L  L  ++ +    LPS +  LK L  L
Sbjct: 908  SSICKLKKLRRLNLSGCLQFRDFPEVLEPMVCLRYL-YLEQTRITKLPSPIGNLKGLACL 966

Query: 253  AIIDCKIFKRLPNELG---------NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSN 303
             + +CK  + +   +G         +L CL  L + G ++ EVP+SLG LSSL  L+LS 
Sbjct: 967  EVGNCKYLEDIHCFVGLQLSKRHRVDLDCLRKLNLDGCSLSEVPDSLGLLSSLEVLDLSG 1026

Query: 304  NNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLD 363
            NNL+  P S+ +L  L+YL        R  + L+S P   P   R   L VD+  SLN  
Sbjct: 1027 NNLRTIPISINKLFELQYLGL------RNCKRLQSLPELPP---RLSKLDVDNCQSLNYL 1077

Query: 364  LNKLSEIVKEGWMKQSFHG------------------QSWIKSMY--------------F 391
            +++ S +V+    +  F                    Q + K +Y               
Sbjct: 1078 VSRSSTVVEGNIFEFIFTNCLRLPVVNQILEYSLLKFQLYTKRLYHQLPDVPEGACSFCL 1137

Query: 392  PGNEIPKWFRHQTF 405
            PG+  P+WF HQ++
Sbjct: 1138 PGDVTPEWFSHQSW 1151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168030408|ref|XP_001767715.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681035|gb|EDQ67466.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 34/308 (11%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAA-IREL 82
           L L  C SL++ P S+  L SL  L + +C   + L + +GN  +L+ L + G   ++ L
Sbjct: 106 LDLNVCRSLKALPESMSNLNSLVKLNLYECGSLKTLPESMGNWNSLVELFLYGCGFLKAL 165

Query: 83  SQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELK- 141
            +S+G L  L +L L             +   ++  LPES+G    L EL+L  C  LK 
Sbjct: 166 PESMGNLKSLVQLNL-------------IGCGSLEALPESMGNLNSLVELDLGECRSLKA 212

Query: 142 -------LKSLRRIKMSKCSNLKRFPK-IASCNKVGITGIKRLSSTLRLKNCSSLESLPS 193
                  L SL ++ +S+C +LK FP+ + + N +           L L+ C SLE+LP 
Sbjct: 213 LPESMGNLNSLVQLNLSRCGSLKAFPESMGNLNSL---------VQLDLEGCESLEALPE 263

Query: 194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA 253
           S+  L SL  L  I C+ L+ LPES+G L  L +L + +C S ++LP S+  L SL  L 
Sbjct: 264 SMGNLNSLVGLYVIECRSLKALPESMGNLNSLVQLNLSRCGSLKALPESMGNLNSLVKLN 323

Query: 254 IIDCKIFKRLPNELGNLKCLAAL-IVKGTAIREVPESLGYLSSLAKLELSN-NNLKRTPE 311
           +I C   K L   +GNL  L  L + +  +++ +PES+G L+SL +L LS   +LK  PE
Sbjct: 324 LIGCGSLKALLESMGNLNSLVELDLGECGSLKALPESMGNLNSLVQLNLSKCGSLKALPE 383

Query: 312 SLYQLSSL 319
           S+  L+SL
Sbjct: 384 SMGNLNSL 391

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.399	0.089	0.329	1.5e-15
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.397	0.147	0.350	8.1e-15
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.428	0.137	0.325	3.3e-13
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.419	0.119	0.307	1.1e-12
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.390	0.132	0.310	4e-12
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.573	0.209	0.294	4.2e-12
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.442	0.165	0.305	1.9e-11
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.510	0.174	0.296	1.9e-11
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.634	0.228	0.280	4.1e-11
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.577	0.219	0.278	8.6e-11

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 65/197 (32%), Positives = 94/197 (47%)

Query:   114 AAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKRFPKIASC 165
             +++ E+P SIG  T L  L+L  CS L         +  L+ + +  CSNL + P  +S 
Sbjct:   864 SSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNISELQVLNLHNCSNLVKLP--SSF 921

Query:   166 NKVGITGIKRLSSTLRLKNCXXXXXXXXXXCMLKSLRFLETIACKKLERLPESLGQLALL 225
                  T + RL     L  C            + +L+ L    C  L +LP S+G L LL
Sbjct:   922 GHA--TNLWRLD----LSGCSSLVELPSSIGNITNLQELNLCNCSNLVKLPSSIGNLHLL 975

Query:   226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE 285
               L + +C   E+LPS++  LKSL  L + DC  FK  P    N++CL    + GTA+ E
Sbjct:   976 FTLSLARCQKLEALPSNI-NLKSLERLDLTDCSQFKSFPEISTNIECL---YLDGTAVEE 1031

Query:   286 VPESLGYLSSLAKLELS 302
             VP S+   S L  L +S
Sbjct:  1032 VPSSIKSWSRLTVLHMS 1048

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 69/197 (35%), Positives = 99/197 (50%)

Query:   114 AAIRELPESIGKSTLLSELELKNCSEL-KLKS------LRRIKMSKCSNLKRFPKIASCN 166
             +++ ELP SI K T L  L+L+NCS L KL +      LR +K+  CS+L   P      
Sbjct:   748 SSLVELPSSIEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSLIELPL----- 802

Query:   167 KVGI-TGIKRLSSTLRLKNCXXXXXXXXXXCMLKSLRFLETIACKKLERLPESLGQLALL 225
              +G  T +K+L+    +  C            +  L   +   C  L  LP S+G L  L
Sbjct:   803 SIGTATNLKQLN----ISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNL 858

Query:   226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE 285
             C+L M  CS  E+LP ++  LKSL  L + DC   K  P E+     ++ L +KGTAI+E
Sbjct:   859 CKLIMRGCSKLEALPINI-NLKSLDTLNLTDCSQLKSFP-EISTH--ISELRLKGTAIKE 914

Query:   286 VPESLGYLSSLAKLELS 302
             VP S+   S LA  ++S
Sbjct:   915 VPLSIMSWSPLADFQIS 931

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 3.3e-13, Sum P(3) = 3.3e-13
 Identities = 68/209 (32%), Positives = 101/209 (48%)

Query:   111 VEGAAIRELPESIGKSTLLSELELKNCS--ELKLK-----SLRRIKMSKCSNLKRFPKIA 163
             V   ++ ++P+SI +   L +L +   +  EL LK     SL       C  LK+ P   
Sbjct:   842 VRCTSLSKIPDSINELKSLKKLFINGSAVEELPLKPSSLPSLYDFSAGDCKFLKQVP--- 898

Query:   164 SCNKVGITGIKRLSSTLRLK-NCXXXXXXXXXXCMLKSLRFLETIACKKLERLPESLGQL 222
                    + I RL+S L+L+ +             L  +R LE   CK L+ LP+S+G +
Sbjct:   899 -------SSIGRLNSLLQLQLSSTPIEALPEEIGALHFIRELELRNCKFLKFLPKSIGDM 951

Query:   223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTA 282
               L  L + + S+ E LP     L+ L  L + +CK+ KRLP   G+LK L  L +K T 
Sbjct:   952 DTLYSLNL-EGSNIEELPEEFGKLEKLVELRMSNCKMLKRLPESFGDLKSLHRLYMKETL 1010

Query:   283 IREVPESLGYLSSLAKLELSNNNLKRTPE 311
             + E+PES G LS+L  LE+    L R  E
Sbjct:  1011 VSELPESFGNLSNLMVLEMLKKPLFRISE 1039

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
 Identities = 63/205 (30%), Positives = 103/205 (50%)

Query:   115 AIRELPESIGKSTLLSELELKNCS--ELKLKS-----LRRIKMSKCSNLKRFPKIASCNK 167
             ++  +PE+I K   L EL +   +  EL +++     L  +    C  LK+ P     + 
Sbjct:  1020 SLSTIPETINKLMSLKELFINGSAVEELPIETGSLLCLTDLSAGDCKFLKQVP-----SS 1074

Query:   168 VGITGIKRLSSTLRLK-NCXXXXXXXXXXCMLKSLRFLETIACKKLERLPESLGQLALLC 226
             +G  G   L+S L+L+ +             L  +R L+   CK L+ LP+++G++  L 
Sbjct:  1075 IG--G---LNSLLQLQLDSTPIEALPEEIGDLHFIRQLDLRNCKSLKALPKTIGKMDTLY 1129

Query:   227 ELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV 286
              L ++  S+ E LP     L++L  L + +CK+ KRLP   G+LK L  L ++ T + E+
Sbjct:  1130 SLNLVG-SNIEELPEEFGKLENLVELRMNNCKMLKRLPKSFGDLKSLHRLYMQETLVAEL 1188

Query:   287 PESLGYLSSLAKLELSNNNLKRTPE 311
             PES G LS+L  LE+    L R  E
Sbjct:  1189 PESFGNLSNLMVLEMLKKPLFRISE 1213

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
 Identities = 63/203 (31%), Positives = 95/203 (46%)

Query:   109 LRVEGAAIRELPESIGKSTLLSELELKNCSELK-------LKSLRRIKMSKCSNLKRFPK 161
             L +E  AI E+P +IG    L  LE+K C+ L+       L SL  + +S CS+L+ FP 
Sbjct:   869 LYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRSFPL 928

Query:   162 IASCNK---VGITGIKRLSSTLRLKNCXXXXXXXXXXCMLKSLRFLETIACKKLERLPES 218
             I+   K   +  T I+ +    +  N             LK+L+      CK L  LP +
Sbjct:   929 ISESIKWLYLENTAIEEIPDLSKATN-------------LKNLKLNN---CKSLVTLPTT 972

Query:   219 LGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIV 278
             +G L  L   +M +C+  E LP  +  L SL  L +  C   +  P    N+     L +
Sbjct:   973 IGNLQKLVSFEMKECTGLEVLPIDV-NLSSLMILDLSGCSSLRTFPLISTNI---VWLYL 1028

Query:   279 KGTAIREVPESLGYLSSLAKLEL 301
             + TAI E+P ++G L  L KLE+
Sbjct:  1029 ENTAIEEIPSTIGNLHRLVKLEM 1051

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 86/292 (29%), Positives = 128/292 (43%)

Query:   106 LRVLRVEG-AAIRELPESIGKSTLLSELELKNCSEL-KLKS-------LRRIKMSKCSNL 156
             L VL + G +++ ELP SIG +T L +LEL  CS L +L S       L+ I  S C NL
Sbjct:   699 LEVLNLNGCSSLVELPFSIGNATKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCENL 758

Query:   157 KRFPKIASCNKVG-ITGIKRLSSTLRLKNCXXXXXXXXXXCMLKSLRFLETIACKKLERL 215
                P     + +G  T +K L     L  C              +L+ L  I C  L+ L
Sbjct:   759 VELP-----SSIGNATNLKELD----LSCCSSLKELPSSIGNCTNLKKLHLICCSSLKEL 809

Query:   216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELG---NLKC 272
             P S+G    L EL +  CSS   LPSS+    +L  L +  C+    LP+ +G   NLK 
Sbjct:   810 PSSIGNCTNLKELHLTCCSSLIKLPSSIGNAINLEKLILAGCESLVELPSFIGKATNLKI 869

Query:   273 LAALIVKGTAIREVPESLGYLSSLAKLEL----------SNNNLKRTPEXXXXXXXXXXX 322
             L    +  + + E+P  +G L  L++L L          +N NL+   E           
Sbjct:   870 LNLGYL--SCLVELPSFIGNLHKLSELRLRGCKKLQVLPTNINLEFLNELDLTDCILLKT 927

Query:   323 XP-FENNSDRIPEYLRSSPTS-IPSELRSLNLSVDSGNSLNLDLNKLSEIVK 372
              P    N  R+  +LR +    +PS LRS     D     + +L++ S +++
Sbjct:   928 FPVISTNIKRL--HLRGTQIEEVPSSLRSWPRLEDLQMLYSENLSEFSHVLE 977

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 66/216 (30%), Positives = 109/216 (50%)

Query:   106 LRVLR-VEGAAIRELPESIGKSTLLSELELKNCSEL-KLKS-------LRRIKMSKCSNL 156
             L+ LR +   ++ ELP SIG +T L EL+L +CS L KL S       L+++ +++CS+L
Sbjct:   682 LQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSL 741

Query:   157 KRFPKIASCNKVGITGIKRLSSTLRLKNCXXXXXXXXXXCMLKSLRFLETIACKKLERLP 216
              + P  +S   V  T +K L+    L  C            + +L+ +    C  L +LP
Sbjct:   742 VKLP--SSFGNV--TSLKELN----LSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLP 793

Query:   217 ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL 276
              S+G    L EL ++ CSS    PSS+  L  L  L +  C    +LP+ +GN+  L +L
Sbjct:   794 SSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPS-IGNVINLQSL 852

Query:   277 IVKG-TAIREVPESLGYLSSLAKLELSN-NNLKRTP 310
              +   +++ E+P ++   ++L  L L   +NL   P
Sbjct:   853 YLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELP 888

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 76/256 (29%), Positives = 108/256 (42%)

Query:   116 IRELPESIGKSTLLSELELKNCSELK--------LKSLRRIKMSKCSNLKRFPKIASCNK 167
             +R LP  +G    L  L L  C  L+        L SL  +++S C N+  FP++++  +
Sbjct:   752 LRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTSIE 811

Query:   168 VGITGIKRLSSTLRLKNCXXXXXXXXXXCMLKSLRFLETIACKKLERLPESLGQLALLCE 227
             V      R+S T                C L  LR L+    K+L  LP S+ +L  L +
Sbjct:   812 V-----LRISET-------SIEEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEK 859

Query:   228 LKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP 287
             LK+  CS  ES P  +C   S      +D    K LP  +GNL  L  L    T IR  P
Sbjct:   860 LKLSGCSVLESFPLEICQTMSCLRWFDLDRTSIKELPENIGNLVALEVLQASRTVIRRAP 919

Query:   288 ESLGYLSSLAKLELSNNNLKRTPEXXXXXXXXXXXXPFENNSD-RIPEYLRSSPTSIPSE 346
              S+  L+ L  L + N+    TPE            P     D R       + T IP+ 
Sbjct:   920 WSIARLTRLQVLAIGNSFF--TPEGLLHSLCP----PLSRFDDLRALSLSNMNMTEIPNS 973

Query:   347 LRSL-NL-SVD-SGNS 359
             + +L NL  +D SGN+
Sbjct:   974 IGNLWNLLELDLSGNN 989

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
 Identities = 86/307 (28%), Positives = 130/307 (42%)

Query:   109 LRVEGA-AIRELPESIGKSTLLSELELKNCSEL----KL--KSLRRIKMSKCSNLKRFPK 161
             L +EG  +++ELP+ +   T L  L L+ C+ L    K+   SL+ + +S CS+ + F  
Sbjct:   686 LNLEGCTSLKELPDEMKDMTNLVFLNLRGCTSLLSLPKITTNSLKTLILSGCSSFQTFEV 745

Query:   162 IASCNKVGITGIKRLSSTLRLKNCXXXXXXXXXXCMLKSLRFLETIACKKLERLPESLGQ 221
             I+          + L S L L N             L  L FL    CK L  LP+ LG+
Sbjct:   746 IS----------EHLES-LYL-NGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPDCLGE 793

Query:   222 LALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIV-KG 280
             L  L ELK+ +CS  +  P     ++SL  L ++D      LP  + +L  L  L + + 
Sbjct:   794 LKSLQELKLSRCSKLKIFPDVTAKMESLLVL-LLDGTSIAELPCSIFHLSSLRRLCLSRN 852

Query:   281 TAIREVPESLGYLSSLAKLELSN-NNLKRTPEXXXXXXXXXXXXPFENNSDRIPEYLRSS 339
               IR +   +G++  L  LEL    NL   P                  +   P+ L + 
Sbjct:   853 DNIRTLRFDMGHMFHLKWLELKYCKNLTSLPILPPNLQCLNAHGCTSLRTVASPQTLPTP 912

Query:   340 PTSIPSELRSLN---LSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEI 396
                I S     N   L   S N++   + K S+++        F  +S I +  FPG EI
Sbjct:   913 TEQIHSTFIFTNCHELEQVSKNAIISYVQKKSKLMSADRYSPDFVYKSLIGTC-FPGCEI 971

Query:   397 PKWFRHQ 403
             P WF HQ
Sbjct:   972 PAWFNHQ 978

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 8.6e-11, P = 8.6e-11
 Identities = 81/291 (27%), Positives = 124/291 (42%)

Query:   129 LSELELKNCSELKLKSLRRIKMSKCS--NLKRFPKIASCNKVGITGIKRLSSTLRLKNCX 186
             L  L L+ C+ LK   L    M+     NLK    + S  K+ +  +K    TL L NC 
Sbjct:   690 LERLNLEGCTALKTLLLGPENMASLVFLNLKGCTGLESLPKINLRSLK----TLILSNCS 745

Query:   187 XXXXXXXXXCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCML 246
                        L +L +L+  A K L   P+ + +L  L +L M  C     LP     L
Sbjct:   746 NLEEFWVISETLYTL-YLDGTAIKTL---PQDMVKLTSLVKLYMKDCEMLVKLPEEFDKL 801

Query:   247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNL 306
             K L  L    CK    LP+ + N++CL  L++ GTAI ++P    ++SSL +L LS N  
Sbjct:   802 KVLQELVCSGCKRLSSLPDVMKNMQCLQILLLDGTAITKIP----HISSLERLCLSRNEK 857

Query:   307 KR--TPEXXXXXXXXXXXXPFENNSDRIPEY---LR-------SSPTSIPSELRSLNLSV 354
                 + +             +      IPE    L+        S T++ + L + +L  
Sbjct:   858 ISCLSNDIRLLSQLKWLDLKYCTKLVSIPELPTNLQCLDANGCESLTTVANPLAT-HLPT 916

Query:   355 DSGNSLNLDLN--KLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQ 403
             +  +S  +  N  KL    KEG++ ++        S  FPG E+P WF H+
Sbjct:   917 EQIHSTFIFTNCDKLDRTAKEGFVPEALF------STCFPGCEVPSWFCHE 961

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	443
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-16
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 101/389 (25%), Positives = 168/389 (43%), Gaps = 69/389 (17%)

Query: 67  ETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFE---------YLRVLRVEG-AAI 116
           E L+ L+++G+ + +L   +  L  L  ++L+ S   +          L  L++   +++
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670

Query: 117 RELPESIGKSTLLSELELKNCSELK-------LKSLRRIKMSKCSNLKRFPKIA---SCN 166
            ELP SI     L +L++  C  L+       LKSL R+ +S CS LK FP I+   S  
Sbjct: 671 VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWL 730

Query: 167 KVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF---------LETIACKKLERL-- 215
            +  T I+   S LRL+N   L      LC +KS +          L T+    L RL  
Sbjct: 731 DLDETAIEEFPSNLRLENLDEL-----ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785

Query: 216 ---------PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNE 266
                    P S+  L  L  L++  C + E+LP+ +  L+SL  L +  C   +  P+ 
Sbjct: 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844

Query: 267 LGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSN-NNLKRTPESLYQLSSLKYLKPF 325
             N+   + L +  T I EVP  +   S+L+ L+++  NNL+R   ++ +L  L+ +  F
Sbjct: 845 STNI---SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD-F 900

Query: 326 ENNSDRIPEYLRSSPTSIPSELRSLNLSVDSG------NSLNLDLNKLSEIVKEGWMKQS 379
            +           SP+ +     +++  + S       N  NLD   L            
Sbjct: 901 SDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL------------ 948

Query: 380 FHGQSWIKSMYFPGNEIPKWFRHQTFPVS 408
              QS  K +   G E+P +F H+T   S
Sbjct: 949 LQQQSIFKQLILSGEEVPSYFTHRTTGAS 977

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 77/263 (29%), Positives = 114/263 (43%), Gaps = 35/263 (13%)

Query: 106 LRVLRVEGAAIRELPESIGKSTLL------SELELKNCSELKLKSLRRIKMSKCSNLKRF 159
           LR+LR +   +R +P +     L+      S+LE        L  LR I +    NLK  
Sbjct: 591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI 650

Query: 160 PKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESL 219
           P ++    +          TL+L +CSSL  LPSS+  L  L  L+   C+ LE LP  +
Sbjct: 651 PDLSMATNL---------ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701

Query: 220 GQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNE--LGNLKCLAALI 277
              +L   L +  CS  +S P     +  L     +D    +  P+   L NL  L    
Sbjct: 702 NLKSLYR-LNLSGCSRLKSFPDISTNISWL----DLDETAIEEFPSNLRLENLDELILCE 756

Query: 278 VKGTAIREVPESLGYL-----SSLAKLELSNN-NLKRTPESLYQLSSLKYLKPFENNSDR 331
           +K   + E  + L  L      SL +L LS+  +L   P S+  L  L++L+  EN  + 
Sbjct: 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE-IENCIN- 814

Query: 332 IPEYLRSSPTSIPSE-LRSLNLS 353
               L + PT I  E L SL+LS
Sbjct: 815 ----LETLPTGINLESLESLDLS 833

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 231 IKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL 290
           +  +  ESLPS L  L +L  L +    +   LP  L NL  L  L + G  I ++P  +
Sbjct: 147 LSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKISDLPPEI 205

Query: 291 GYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSL 350
             LS+L +L+LSNN++     SL  L +L  L+   N  + +PE +        S L +L
Sbjct: 206 ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI-----GNLSNLETL 260

Query: 351 NLS 353
           +LS
Sbjct: 261 DLS 263

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 5/167 (2%)

Query: 191 LPSSLCMLKSLRFLETIACKKLE-RLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSL 249
           +P+SL  L SL FL T+A  +L  ++P  LGQ+  L  + +   +    +P  +  L SL
Sbjct: 180 IPNSLTNLTSLEFL-TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 250 TPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLK- 307
             L ++   +   +P+ LGNLK L  L +    +   +P S+  L  L  L+LS+N+L  
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 308 RTPESLYQLSSLKYLKPFENN-SDRIPEYLRSSPTSIPSELRSLNLS 353
             PE + QL +L+ L  F NN + +IP  L S P     +L S   S
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 263 LPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLK 320
           +PN++  L+ L ++ + G +IR  +P SLG ++SL  L+LS N+   + PESL QL+SL+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 321 YLKPFENN-SDRIPEYLRSSP 340
            L    N+ S R+P  L    
Sbjct: 494 ILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 25/141 (17%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
           L L +  SL   PSS+  L  L  L+I +C   E L   + NLE+L  L + G +     
Sbjct: 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS----- 836

Query: 84  QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--- 140
               +L    ++    S        L +    I E+P  I K + LS L++  C+ L   
Sbjct: 837 ----RLRTFPDISTNISD-------LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885

Query: 141 -----KLKSLRRIKMSKCSNL 156
                KLK L  +  S C  L
Sbjct: 886 SLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 182 LKNCSSLESL-----------PSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKM 230
           L N +SLE L           P  L  +KSL+++          +P  +G L  L  L +
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 231 IKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPES 289
           +  +    +PSSL  LK+L  L +   K+   +P  + +L+ L +L +   ++  E+PE 
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 290 LGYLSSLAKLELSNNNLK-RTPESLYQLSSLKYLKPFENN-SDRIPEYL 336
           +  L +L  L L +NN   + P +L  L  L+ L+ + N  S  IP+ L
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 53/177 (29%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 179 TLRLKNCSSLESLPSSL-CMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSF- 236
           TL L N + L+SLP +L   +K+L         +L  +P +L       EL + + +   
Sbjct: 203 TLILDN-NELKSLPENLQGNIKTLYANSN----QLTSIPATLPDTIQEMELSINRITELP 257

Query: 237 ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSL 296
           E LPS+L  L        +       LP  L     L  L V   +IR +P  L   S +
Sbjct: 258 ERLPSALQSL-------DLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLP--SGI 306

Query: 297 AKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLS 353
             L + +N+L   PE+L     LK L+  EN        L S P S+P EL+ L++S
Sbjct: 307 THLNVQSNSLTALPETLPP--GLKTLEAGENA-------LTSLPASLPPELQVLDVS 354

Length = 754

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	443
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.98
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.61
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.36
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
PLN03150	623	hypothetical protein; Provisional	99.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PLN03150	623	hypothetical protein; Provisional	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.59
KOG4341	483	consensus F-box protein containing LRR [General fu	98.5
PRK15386	426	type III secretion protein GogB; Provisional	98.5
PRK15386	426	type III secretion protein GogB; Provisional	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
KOG4341	483	consensus F-box protein containing LRR [General fu	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.89
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.34
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.11
smart00370	26	LRR Leucine-rich repeats, outliers.	94.22
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.58
KOG4308	478	consensus LRR-containing protein [Function unknown	92.58
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.39
smart00370	26	LRR Leucine-rich repeats, outliers.	92.39
KOG4308	478	consensus LRR-containing protein [Function unknown	91.99
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.58
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.5
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.37
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.51
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.32

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-37  Score=337.82  Aligned_cols=360  Identities=21%  Similarity=0.273  Sum_probs=268.0

Q ss_pred             CCCCCccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccC-CCCcccEEEeecCchh-h
Q 046017            4 KIPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELG-NLETLLVLRVEGAAIR-E   81 (443)
Q Consensus         4 ~~~~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~-~   81 (443)
                      +.++|.|.|+.|....+++.|+++++.+.+.+|.++..+++|++|++++|.+.+.+|..+. .+++|++|++++|.++ .
T Consensus        54 ~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~  133 (968)
T PLN00113         54 SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS  133 (968)
T ss_pred             CCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc
Confidence            4689999999998778999999999998888888899999999999999998888887755 8999999999998886 5


Q ss_pred             hhhhhccCCCCcEEecCCCC----------CCCCccEEEEeCCCC-cccCccccCCCCCCEEeccCCCCC--------CC
Q 046017           82 LSQSLGQLALLSELELKNSS----------EFEYLRVLRVEGAAI-RELPESIGKSTLLSELELKNCSEL--------KL  142 (443)
Q Consensus        82 lp~~~~~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~~-~~lp~~l~~l~~L~~L~l~~n~~~--------~l  142 (443)
                      +|.  +.+++|++|++++|.          .+++|++|++++|.+ +.+|..+.++++|++|++++|...        .+
T Consensus       134 ~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  211 (968)
T PLN00113        134 IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM  211 (968)
T ss_pred             cCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence            554  457889999988873          568889999988884 477888888889999999888754        67


Q ss_pred             CCcCEEEccCCCCCCCCCCC----CCCccccc--cCcc-ccccccc---------ccCCCCCcccCCcccCCcccceeec
Q 046017          143 KSLRRIKMSKCSNLKRFPKI----ASCNKVGI--TGIK-RLSSTLR---------LKNCSSLESLPSSLCMLKSLRFLET  206 (443)
Q Consensus       143 ~~L~~L~l~~~~~l~~~~~~----~~l~~L~l--~~l~-~l~~~l~---------~~~~~~l~~lp~~~~~l~~L~~L~l  206 (443)
                      ++|++|++++|.....+|..    .+++.|++  +.+. .+|..+.         ..+|...+.+|.++..+++|++|++
T Consensus       212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL  291 (968)
T ss_pred             CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence            88888888887766667754    44555665  4333 3333221         1133333456666777777777777


Q ss_pred             ccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc-c
Q 046017          207 IACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-E  285 (443)
Q Consensus       207 s~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~  285 (443)
                      ++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|+++ .
T Consensus       292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence            777777777777777777777777777777777777777777777777777777777777777777777777777776 5


Q ss_pred             cChhccCCCCCCEEEccCCCCC-CCChhhhCCCCCCeeeCCCCCC-CccCcccccCCCCCcccccccccccCCCCcc-cC
Q 046017          286 VPESLGYLSSLAKLELSNNNLK-RTPESLYQLSSLKYLKPFENNS-DRIPEYLRSSPTSIPSELRSLNLSVDSGNSL-NL  362 (443)
Q Consensus       286 lp~~~~~l~~L~~L~ls~n~l~-~lp~~l~~l~~L~~L~ls~n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l-~~  362 (443)
                      +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++ +.+|..+..+     ++|+.|++++|.++.. |.
T Consensus       372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~~~  446 (968)
T PLN00113        372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-----PLVYFLDISNNNLQGRINS  446 (968)
T ss_pred             CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC-----CCCCEEECcCCcccCccCh
Confidence            6777777777777777777776 5677777788888888888777 4566666554     6788888888866543 43


Q ss_pred             ChhhhhhH
Q 046017          363 DLNKLSEI  370 (443)
Q Consensus       363 ~~~~l~~l  370 (443)
                      .+..++.+
T Consensus       447 ~~~~l~~L  454 (968)
T PLN00113        447 RKWDMPSL  454 (968)
T ss_pred             hhccCCCC
Confidence            33333433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9e-36  Score=324.75  Aligned_cols=348  Identities=23%  Similarity=0.285  Sum_probs=208.7

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchh-hhhhhhccCCCCcEE
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR-ELSQSLGQLALLSEL   95 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L   95 (443)
                      .+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            5677888888888777777777777888888888877777777777777777777777777776 667777777777777


Q ss_pred             ecCCCC----------CCCCccEEEEeCCCCc-ccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCC
Q 046017           96 ELKNSS----------EFEYLRVLRVEGAAIR-ELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNL  156 (443)
Q Consensus        96 ~ls~~~----------~l~~L~~L~l~~n~~~-~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l  156 (443)
                      ++++|.          ++++|++|++++|.+. .+|..+.++++|++|++++|...        .+++|++|++++|...
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            777652          3456666666666643 45555666666666666665432        3445555555554433


Q ss_pred             CC------------------------CCCC----CCCccccc--cCcc-ccccccc---------ccCCCCCcccCCccc
Q 046017          157 KR------------------------FPKI----ASCNKVGI--TGIK-RLSSTLR---------LKNCSSLESLPSSLC  196 (443)
Q Consensus       157 ~~------------------------~~~~----~~l~~L~l--~~l~-~l~~~l~---------~~~~~~l~~lp~~~~  196 (443)
                      ..                        +|..    .+++.|++  +.+. .+|..+.         ..++...+.+|..++
T Consensus       322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~  401 (968)
T PLN00113        322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG  401 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence            33                        3332    22233333  2222 2222111         112222234555555


Q ss_pred             CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017          197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL  276 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  276 (443)
                      .+++|+.|++++|.+.+.+|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|
T Consensus       402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L  480 (968)
T PLN00113        402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENL  480 (968)
T ss_pred             CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence            66666666666666666666666666666666666666666665555556666666666666555555433 23556666


Q ss_pred             EecCCCCc-ccChhccCCCCCCEEEccCCCCC-CCChhhhCCCCCCeeeCCCCCC-CccCcccccCCCCCcccccccccc
Q 046017          277 IVKGTAIR-EVPESLGYLSSLAKLELSNNNLK-RTPESLYQLSSLKYLKPFENNS-DRIPEYLRSSPTSIPSELRSLNLS  353 (443)
Q Consensus       277 ~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~-~lp~~l~~l~~L~~L~ls~n~l-~~lp~~~~~~~~~lp~~L~~L~l~  353 (443)
                      ++++|+++ .+|..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+ +.+|..+..+     ++|++|+++
T Consensus       481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls  555 (968)
T PLN00113        481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM-----PVLSQLDLS  555 (968)
T ss_pred             ECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc-----ccCCEEECC
Confidence            66666665 45555666666666666666666 4566666666666666666666 3455555444     566666666


Q ss_pred             cCCCC-cccCChhhhhhH
Q 046017          354 VDSGN-SLNLDLNKLSEI  370 (443)
Q Consensus       354 ~N~l~-~l~~~~~~l~~l  370 (443)
                      +|.+. .+|..+..++.+
T Consensus       556 ~N~l~~~~p~~l~~l~~L  573 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESL  573 (968)
T ss_pred             CCcccccCChhHhcCccc
Confidence            66554 445555444444

>PLN03210 Resistant to P

Probab=99.98  E-value=9.5e-31  Score=286.40  Aligned_cols=372  Identities=25%  Similarity=0.342  Sum_probs=253.1

Q ss_pred             ccCCCcceEEecCCC------CCCcCCccccCCC-CCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhcc
Q 046017           16 IERPCSCGLRLKNCS------SLESFPSSLCVLK-SLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQ   88 (443)
Q Consensus        16 ~~~~~L~~L~ls~~~------~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~   88 (443)
                      ..+++|+.|.+..+.      ....+|..+..++ +|+.|.+.++. ...+|..+ .+.+|+.|+++++.+..+|..+..
T Consensus       555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~  632 (1153)
T PLN03210        555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS  632 (1153)
T ss_pred             hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence            467889999887653      1225666676654 69999999876 46788777 678999999999999999998999


Q ss_pred             CCCCcEEecCCCC---------CCCCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCCC-------CCCCcCEEEcc
Q 046017           89 LALLSELELKNSS---------EFEYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSEL-------KLKSLRRIKMS  151 (443)
Q Consensus        89 l~~L~~L~ls~~~---------~l~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~  151 (443)
                      +++|+.|+++++.         .+++|+.|++++|. +..+|..+..+++|+.|++++|..+       ++++|++|+++
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Ls  712 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLS  712 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCC
Confidence            9999999998864         45889999999987 8899999999999999999998655       67899999999


Q ss_pred             CCCCCCCCCCC-CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeecccccccc-------cccccccC
Q 046017          152 KCSNLKRFPKI-ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLE-------RLPESLGQ  221 (443)
Q Consensus       152 ~~~~l~~~~~~-~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~-------~~p~~l~~  221 (443)
                      +|..++.+|.. .+++.|++  +.+..+               |..+ .+++|++|.+.++....       ..+.....
T Consensus       713 gc~~L~~~p~~~~nL~~L~L~~n~i~~l---------------P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        713 GCSRLKSFPDISTNISWLDLDETAIEEF---------------PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCccccccccCCcCeeecCCCccccc---------------cccc-cccccccccccccchhhccccccccchhhhhc
Confidence            99999888877 77887777  444444               4332 34556666665432111       01111222


Q ss_pred             CCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCC-CCcccChhccCCCCCCEEE
Q 046017          222 LALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT-AIREVPESLGYLSSLAKLE  300 (443)
Q Consensus       222 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~  300 (443)
                      .++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++| .+..+|..   .++|+.|+
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~  852 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN  852 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence            3567777777766666677777777777777777766666666554 5667777777776 44455532   34677777


Q ss_pred             ccCCCCCCCChhhhCCCCCCeeeCCC-CCCCccCcccccCCCCCcccccccccccC-CCCcccCChh-----h-------
Q 046017          301 LSNNNLKRTPESLYQLSSLKYLKPFE-NNSDRIPEYLRSSPTSIPSELRSLNLSVD-SGNSLNLDLN-----K-------  366 (443)
Q Consensus       301 ls~n~l~~lp~~l~~l~~L~~L~ls~-n~l~~lp~~~~~~~~~lp~~L~~L~l~~N-~l~~l~~~~~-----~-------  366 (443)
                      +++|.++.+|.++..+++|+.|++++ ++++.+|..+..+     ++|+.+++++| .+..++..-.     .       
T Consensus       853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-----~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~  927 (1153)
T PLN03210        853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-----KHLETVDFSDCGALTEASWNGSPSEVAMATDNIHS  927 (1153)
T ss_pred             CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc-----cCCCeeecCCCcccccccCCCCchhhhhhcccccc
Confidence            77777777776677777777777776 6666666655443     56666666665 2332221100     0       


Q ss_pred             ----hhhHHHhcccccc----cccccceeEEEecCCCCCcccccCcCCccce-eecc
Q 046017          367 ----LSEIVKEGWMKQS----FHGQSWIKSMYFPGNEIPKWFRHQTFPVSDC-FRHE  414 (443)
Q Consensus       367 ----l~~l~~~~~~~~~----~~~~~~~~~~~l~g~~ip~w~~~~~~~~s~~-~~~~  414 (443)
                          ...+...+|....    .+.......+.++|.++|+||.|++.|.+.. +...
T Consensus       928 ~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~  984 (1153)
T PLN03210        928 KLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLL  984 (1153)
T ss_pred             cCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccC
Confidence                0001111222211    1111223667899999999999999999996 7764

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=4.7e-33  Score=264.04  Aligned_cols=375  Identities=18%  Similarity=0.181  Sum_probs=284.3

Q ss_pred             cCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhcc
Q 046017           10 IDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQ   88 (443)
Q Consensus        10 ~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~   88 (443)
                      |......-.+..+.||+++|.+...-+..|.++++|+.+++..|. ...+|...+...+|+.|+|.+|.|..+. +.+..
T Consensus        69 ~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~  147 (873)
T KOG4194|consen   69 KSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSA  147 (873)
T ss_pred             ccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHh
Confidence            333344455678889999998666556668899999999998876 5678876666677999999999998766 67888


Q ss_pred             CCCCcEEecCCCC----------CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC--------CCCCcCEEE
Q 046017           89 LALLSELELKNSS----------EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL--------KLKSLRRIK  149 (443)
Q Consensus        89 l~~L~~L~ls~~~----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~  149 (443)
                      ++.|+.||||.|.          .-.++++|+|++|.++.+- ..|..+.+|..|.|++|++.        ++++|+.|+
T Consensus       148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD  227 (873)
T ss_pred             HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence            8999999998862          3367999999999988874 34677888999999999876        588888888


Q ss_pred             ccCCCCCCCCCCC-----CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCC
Q 046017          150 MSKCSNLKRFPKI-----ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQL  222 (443)
Q Consensus       150 l~~~~~l~~~~~~-----~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l  222 (443)
                      +..| .++.+...     .+++.|.+  |++..+..              ..|..+.++++|+|+.|++...--.++.++
T Consensus       228 LnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~D--------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  228 LNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDD--------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             cccc-ceeeehhhhhcCchhhhhhhhhhcCcccccC--------------cceeeecccceeecccchhhhhhccccccc
Confidence            8874 44433221     45555555  55554433              236678899999999988887777888899


Q ss_pred             CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEc
Q 046017          223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLEL  301 (443)
Q Consensus       223 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l  301 (443)
                      +.|+.|++|+|.+...-++.+...++|++|+|++|++...-+..+..+..|++|.|+.|.++.+. ..|..+++|++|||
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence            99999999999887777788888899999999999997766778888999999999999999775 45778899999999


Q ss_pred             cCCCCCC-C---ChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc-cCChhh--hhhHHH--
Q 046017          302 SNNNLKR-T---PESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL-NLDLNK--LSEIVK--  372 (443)
Q Consensus       302 s~n~l~~-l---p~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l-~~~~~~--l~~l~~--  372 (443)
                      ++|.+.. +   ...+.++++|+.|++.+|+|+.||...+..   + .+|++|||.+|.+.++ |..|.+  +.+++.  
T Consensus       373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg---l-~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS  448 (873)
T KOG4194|consen  373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG---L-EALEHLDLGDNAIASIQPNAFEPMELKELVMNS  448 (873)
T ss_pred             cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc---C-cccceecCCCCcceeecccccccchhhhhhhcc
Confidence            9999882 2   346788999999999999999999654432   3 5899999999988887 444543  333322  


Q ss_pred             --------hcccccccccccceeEEEecCCCCCcccccCcC
Q 046017          373 --------EGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTF  405 (443)
Q Consensus       373 --------~~~~~~~~~~~~~~~~~~l~g~~ip~w~~~~~~  405 (443)
                              ..|+.+....+.. +......+..|+|+..|..
T Consensus       449 ssflCDCql~Wl~qWl~~~~l-q~sv~a~CayPe~Lad~~i  488 (873)
T KOG4194|consen  449 SSFLCDCQLKWLAQWLYRRKL-QSSVIAKCAYPEPLADQSI  488 (873)
T ss_pred             cceEEeccHHHHHHHHHhccc-ccceeeeccCCccccccee
Confidence                    2344443333332 3444455577999887754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.2e-32  Score=260.26  Aligned_cols=310  Identities=23%  Similarity=0.271  Sum_probs=225.3

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEecccccccc-ccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFE-RLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      +.+|++|.+++|++ ..+...++.++.||.+++++|++.. .+|..+.++..|.+|||++|+++++|..+...+++-+|+
T Consensus        54 lqkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN  132 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLN  132 (1255)
T ss_pred             Hhhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence            34455555555542 2222234455555555555554432 455566666666666666666666666666666666666


Q ss_pred             cCCCC----------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCCC
Q 046017           97 LKNSS----------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKR  158 (443)
Q Consensus        97 ls~~~----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~~  158 (443)
                      +|+|.          ++..|-.|++++|.+..+|+.+..+..|++|+|++|+..        .+++|++|.+++.     
T Consensus       133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T-----  207 (1255)
T KOG0444|consen  133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT-----  207 (1255)
T ss_pred             cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc-----
Confidence            66653          445566666666666666666666666666666666543        3333444444442     


Q ss_pred             CCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017          159 FPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES  238 (443)
Q Consensus       159 ~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~  238 (443)
                                                ...+..+|.++..+.+|..+++|.|+ +..+|+.+.++++|+.|+||+|.++ +
T Consensus       208 --------------------------qRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~it-e  259 (1255)
T KOG0444|consen  208 --------------------------QRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKIT-E  259 (1255)
T ss_pred             --------------------------cchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCcee-e
Confidence                                      23345788889999999999999865 4568899999999999999998765 4


Q ss_pred             CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc--ccChhccCCCCCCEEEccCCCCCCCChhhhCC
Q 046017          239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR--EVPESLGYLSSLAKLELSNNNLKRTPESLYQL  316 (443)
Q Consensus       239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l  316 (443)
                      +....+...+|++|+++.|++ ..+|..+..++.|+.|.+.+|+++  .+|..++.+.+|+++..++|.+.-+|+.+..|
T Consensus       260 L~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC  338 (1255)
T KOG0444|consen  260 LNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC  338 (1255)
T ss_pred             eeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh
Confidence            445667788999999999988 679999999999999999999776  89999999999999999999999999999999


Q ss_pred             CCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCChhhh
Q 046017          317 SSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKL  367 (443)
Q Consensus       317 ~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l  367 (443)
                      ..|+.|.|+.|++-.+|+.+--+     +.|+.||+..|.--..|...+.-
T Consensus       339 ~kL~kL~L~~NrLiTLPeaIHlL-----~~l~vLDlreNpnLVMPPKP~da  384 (1255)
T KOG0444|consen  339 VKLQKLKLDHNRLITLPEAIHLL-----PDLKVLDLRENPNLVMPPKPNDA  384 (1255)
T ss_pred             HHHHHhcccccceeechhhhhhc-----CCcceeeccCCcCccCCCCcchh
Confidence            99999999999999999987654     78999999999766666665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=7.5e-32  Score=257.72  Aligned_cols=331  Identities=21%  Similarity=0.307  Sum_probs=212.7

Q ss_pred             cCCCcceEEecCCCCCC-cCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEE
Q 046017           17 ERPCSCGLRLKNCSSLE-SFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSEL   95 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L   95 (443)
                      .++-++-+|+++|.+.| .+|..+..|+.++.|.|.... ...+|+.++.+.+|++|.+++|++..+-..+..++.|+.+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV   83 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence            35678889999999885 788888999999999997743 5688999999999999999999999888888888888888


Q ss_pred             ecCCCC-----------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCC
Q 046017           96 ELKNSS-----------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNL  156 (443)
Q Consensus        96 ~ls~~~-----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l  156 (443)
                      ++.+|.           .+..|+.|+++.|+++++|..+...+++-.|+|++|.+-        ++..|-.||+|+ +.+
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chh
Confidence            777653           345666666666766667666666666666666666543        444555555555 344


Q ss_pred             CCCCCC----CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeeccccccc-ccccccccCCCCcceee
Q 046017          157 KRFPKI----ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKL-ERLPESLGQLALLCELK  229 (443)
Q Consensus       157 ~~~~~~----~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~L~  229 (443)
                      ..+|..    ..++.|.+  |.+..          -.+..+    ..+++|+.|.+++.+.+ ..+|.++..+.+|..+|
T Consensus       163 e~LPPQ~RRL~~LqtL~Ls~NPL~h----------fQLrQL----PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD  228 (1255)
T KOG0444|consen  163 EMLPPQIRRLSMLQTLKLSNNPLNH----------FQLRQL----PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD  228 (1255)
T ss_pred             hhcCHHHHHHhhhhhhhcCCChhhH----------HHHhcC----ccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence            444433    22222332  11100          011122    23455555555554332 34566666666666666


Q ss_pred             ccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCC--
Q 046017          230 MIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLK--  307 (443)
Q Consensus       230 ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~--  307 (443)
                      +|.|+ ...+|+.+.++++|+.|+|++|+++ .+....+...+|++|+++.|+++.+|..+..++.|+.|.+.+|+++  
T Consensus       229 lS~N~-Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  229 LSENN-LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             ccccC-CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc
Confidence            66644 3455666666666666666666663 3444445556666666666666666666666666666666666655  


Q ss_pred             CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCChhhhhhH
Q 046017          308 RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI  370 (443)
Q Consensus       308 ~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~~l  370 (443)
                      ++|..++.+.+|+++..++|.++-+|+.+...     ..|+.|.++.|.+-.+|..+.-++.+
T Consensus       307 GiPSGIGKL~~Levf~aanN~LElVPEglcRC-----~kL~kL~L~~NrLiTLPeaIHlL~~l  364 (1255)
T KOG0444|consen  307 GIPSGIGKLIQLEVFHAANNKLELVPEGLCRC-----VKLQKLKLDHNRLITLPEAIHLLPDL  364 (1255)
T ss_pred             CCccchhhhhhhHHHHhhccccccCchhhhhh-----HHHHHhcccccceeechhhhhhcCCc
Confidence            66666666666666666666666666666554     56666666666666666665545544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-30  Score=245.97  Aligned_cols=334  Identities=19%  Similarity=0.170  Sum_probs=256.3

Q ss_pred             CcceEEecCCCCCCcCC-ccccCC--CCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           20 CSCGLRLKNCSSLESFP-SSLCVL--KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p-~~~~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      +-+.||.++..+ ..+. ..+..+  +.-+.|++++|.+...-+..|.++++|+.+++.+|.++.+|.......+|+.|+
T Consensus        53 ~~~lldcs~~~l-ea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   53 NTRLLDCSDREL-EAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD  131 (873)
T ss_pred             CceeeecCcccc-ccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence            445567776652 2211 112221  245779999999877777889999999999999999999998777777899999


Q ss_pred             cCCCC----------CCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCC
Q 046017           97 LKNSS----------EFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLK  157 (443)
Q Consensus        97 ls~~~----------~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~  157 (443)
                      |.+|-          .++.|+.|||+.|.++++|.. +-.-.++++|+|++|++.        .+.+|.+|.++. +.++
T Consensus       132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-Nrit  210 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRIT  210 (873)
T ss_pred             eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-Cccc
Confidence            99872          569999999999999999754 444578999999999887        777999999999 5777


Q ss_pred             CCCCC-----CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeec
Q 046017          158 RFPKI-----ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKM  230 (443)
Q Consensus       158 ~~~~~-----~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l  230 (443)
                      .+|..     ..++.|++  |.|..+.              --.|..+++|+.|.+..|.+...-...|..+.++++|+|
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive--------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVE--------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeeh--------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            77765     34555666  4443110              123678888999999988877666677888999999999


Q ss_pred             cCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCC
Q 046017          231 IKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRT  309 (443)
Q Consensus       231 s~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~l  309 (443)
                      +.|.+...-..++.++++|+.|++++|.+...-++.+...++|++|+|++|+|+.++ ..+..+..|++|.|++|+++.+
T Consensus       277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l  356 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL  356 (873)
T ss_pred             ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence            998887766678888999999999999998888888888899999999999999876 4577788999999999999987


Q ss_pred             C-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccC-ChhhhhhH
Q 046017          310 P-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNL-DLNKLSEI  370 (443)
Q Consensus       310 p-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~-~~~~l~~l  370 (443)
                      . ..|..+++|++|||++|.|...-++-...-.++ ++|+.|++.+|++.++|. .|..+..+
T Consensus       357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl-~~LrkL~l~gNqlk~I~krAfsgl~~L  418 (873)
T KOG4194|consen  357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL-PSLRKLRLTGNQLKSIPKRAFSGLEAL  418 (873)
T ss_pred             HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc-hhhhheeecCceeeecchhhhccCccc
Confidence            6 468889999999999999843322211111112 689999999999988853 33334444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=1.7e-31  Score=243.29  Aligned_cols=163  Identities=25%  Similarity=0.410  Sum_probs=109.3

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      .+..+++|++.+|. ...+|++++.+..++.+++++|+ ...+|++++.+..|+.+++++|.+.++|+.++.+..|+.++
T Consensus        66 nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~  143 (565)
T KOG0472|consen   66 NLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD  143 (565)
T ss_pred             cccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence            45566777777766 45666667777777777777665 34566666666666666666666666666665555555555


Q ss_pred             cCCCC--------------------------------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----
Q 046017           97 LKNSS--------------------------------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL----  140 (443)
Q Consensus        97 ls~~~--------------------------------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~----  140 (443)
                      ..+|.                                +++.|++|+...|-++.+|..++.+.+|+.|++++|++.    
T Consensus       144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe  223 (565)
T KOG0472|consen  144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE  223 (565)
T ss_pred             ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC
Confidence            54441                                236677777777777778877777888877777777654    


Q ss_pred             --------------------------CCCCcCEEEccCCCCCCCCCCC----CCCccccc--cCcccccccccc
Q 046017          141 --------------------------KLKSLRRIKMSKCSNLKRFPKI----ASCNKVGI--TGIKRLSSTLRL  182 (443)
Q Consensus       141 --------------------------~l~~L~~L~l~~~~~l~~~~~~----~~l~~L~l--~~l~~l~~~l~~  182 (443)
                                                .++++.+||+.+ +.++++|+.    .++..|++  |.++.+|..++.
T Consensus       224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgn  296 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGN  296 (565)
T ss_pred             CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCccccCCccccc
Confidence                                      677788888888 578888877    55666777  666666655443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=2.2e-31  Score=242.55  Aligned_cols=368  Identities=25%  Similarity=0.295  Sum_probs=264.0

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEec
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELEL   97 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l   97 (443)
                      -..++.+++++|. ...+.+.+.++..|.+|++++|. ...+|++++.+..++.++.++|++..+|+.++++.+|+.+++
T Consensus        44 qv~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   44 QVDLQKLILSHND-LEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC  121 (565)
T ss_pred             hcchhhhhhccCc-hhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence            3578899999998 44555558899999999999987 457888999999999999999999999999999999999999


Q ss_pred             CCCC---------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-------CCCCcCEEEccCCCCCCCCCC
Q 046017           98 KNSS---------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-------KLKSLRRIKMSKCSNLKRFPK  161 (443)
Q Consensus        98 s~~~---------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~~~~~l~~~~~  161 (443)
                      +++.         .+..|..++..+|++.++|+++.++.+|..+++.+|+..       .++.|++||... +.++.+|.
T Consensus       122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~  200 (565)
T KOG0472|consen  122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPP  200 (565)
T ss_pred             cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCCh
Confidence            9874         457888899999999999999999999999999999766       778889999887 58888888


Q ss_pred             C-CCCcccc---c--cCccccccccccc-------CCCCCcccCCccc-CCcccceeecccccccccccccccCCCCcce
Q 046017          162 I-ASCNKVG---I--TGIKRLSSTLRLK-------NCSSLESLPSSLC-MLKSLRFLETIACKKLERLPESLGQLALLCE  227 (443)
Q Consensus       162 ~-~~l~~L~---l--~~l~~l~~~l~~~-------~~~~l~~lp~~~~-~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~  227 (443)
                      . +.+.+|+   +  |.+..+|..=+..       +.+.++.+|+... ++.++..||+.+|+ ....|+.+..+.+|++
T Consensus       201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~r  279 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLER  279 (565)
T ss_pred             hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhh
Confidence            8 7777644   3  7777777321100       2334445555543 67777778887744 4556777777777888


Q ss_pred             eeccCccCCCCCCchhhcCCCCCcEecccccccc-------------------------------------cCCCC-C--
Q 046017          228 LKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK-------------------------------------RLPNE-L--  267 (443)
Q Consensus       228 L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------------------------------------~~~~~-l--  267 (443)
                      ||+|+|.++ .+|..++++ .|+.|.+.||.+.+                                     ..+.+ +  
T Consensus       280 LDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~  357 (565)
T KOG0472|consen  280 LDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD  357 (565)
T ss_pred             hcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence            888776544 456677777 77777777776511                                     00000 0  


Q ss_pred             -CCCCC--------------------------CceEEecCCCCc------------------------ccChhccCCCCC
Q 046017          268 -GNLKC--------------------------LAALIVKGTAIR------------------------EVPESLGYLSSL  296 (443)
Q Consensus       268 -~~l~~--------------------------L~~L~l~~n~l~------------------------~lp~~~~~l~~L  296 (443)
                       ..+.+                          ....++++|++.                        .+|..+..+++|
T Consensus       358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL  437 (565)
T KOG0472|consen  358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL  437 (565)
T ss_pred             hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc
Confidence             00011                          122333333333                        333345677888


Q ss_pred             CEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCC-hhhhhhHHHhcc
Q 046017          297 AKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLD-LNKLSEIVKEGW  375 (443)
Q Consensus       297 ~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~-~~~l~~l~~~~~  375 (443)
                      ..|++++|-+..+|..++.+-.|+.|+++.|++..+|..+...     ..++.+-.++|+++.+|.+ +.++..+...+.
T Consensus       438 t~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~l-----q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  438 TFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYEL-----QTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             eeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhH-----HHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            8888888888888888888888888888888888888876543     5666666677777777655 666666666666


Q ss_pred             ccccccccc-------ceeEEEecCCCC
Q 046017          376 MKQSFHGQS-------WIKSMYFPGNEI  396 (443)
Q Consensus       376 ~~~~~~~~~-------~~~~~~l~g~~i  396 (443)
                      .++..+..+       .++++.+.||++
T Consensus       513 ~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  513 QNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             CCCchhhCChhhccccceeEEEecCCcc
Confidence            666555432       246667777754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=5.7e-28  Score=240.83  Aligned_cols=327  Identities=22%  Similarity=0.239  Sum_probs=173.7

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCC
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKN   99 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~   99 (443)
                      +|++||+++|. ...+|..+..+.+|+.|+++.|. ...+|.+.+++.+|+++.|.+|.++.+|..+..+.+|++|++++
T Consensus        46 ~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   46 KLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF  123 (1081)
T ss_pred             eeEEeeccccc-cccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence            48888888887 67788778888888888888765 56677778888888888888888888888888888888888887


Q ss_pred             CCC---------C-------------------CCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCCC----------
Q 046017          100 SSE---------F-------------------EYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSEL----------  140 (443)
Q Consensus       100 ~~~---------l-------------------~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~~----------  140 (443)
                      |..         +                   ...+.+++..|. -+.++.++..++.  .|++++|.+.          
T Consensus       124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l  201 (1081)
T KOG0618|consen  124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANL  201 (1081)
T ss_pred             hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccch
Confidence            620         1                   112233333333 1123333333333  3444444332          


Q ss_pred             ---------------CCCCcCEEEccCCCCCCCCCCC--CCCccccc--cCccccccccccc--------CCCCCcccCC
Q 046017          141 ---------------KLKSLRRIKMSKCSNLKRFPKI--ASCNKVGI--TGIKRLSSTLRLK--------NCSSLESLPS  193 (443)
Q Consensus       141 ---------------~l~~L~~L~l~~~~~l~~~~~~--~~l~~L~l--~~l~~l~~~l~~~--------~~~~l~~lp~  193 (443)
                                     .-++|+.|+.++|...+..+..  .+++.+++  +.+..+|.++...        +.+.+..+|.
T Consensus       202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~  281 (1081)
T KOG0618|consen  202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPL  281 (1081)
T ss_pred             hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHH
Confidence                           3445555555555444333333  44555555  4444444333222        2233344444


Q ss_pred             cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhc--------------------------CC
Q 046017          194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCM--------------------------LK  247 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~--------------------------l~  247 (443)
                      .+...++|+.|.+..|. ...+|....++++|++|++..|.+. .+|+.+..                          ++
T Consensus       282 ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~  359 (1081)
T KOG0618|consen  282 RISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA  359 (1081)
T ss_pred             HHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence            44445555555555433 2344555555666666666665432 23322111                          12


Q ss_pred             CCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCC
Q 046017          248 SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFE  326 (443)
Q Consensus       248 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~  326 (443)
                      .|+.|++.+|.+....-+.+.++.+|++|++++|.+.++|+. +.++..|++|++|||+++.+|..+..+..|++|...+
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence            333444444444333333344445555555555555544432 3344455555555555555555555555555555555


Q ss_pred             CCCCccCcccccCCCCCcccccccccccCCCC
Q 046017          327 NNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       327 n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      |++...| .+..+     +.|+.+|++.|.++
T Consensus       440 N~l~~fP-e~~~l-----~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  440 NQLLSFP-ELAQL-----PQLKVLDLSCNNLS  465 (1081)
T ss_pred             Cceeech-hhhhc-----CcceEEecccchhh
Confidence            5555555 22222     35555555555443

>PLN03210 Resistant to P

Probab=99.91  E-value=3.1e-23  Score=227.42  Aligned_cols=296  Identities=25%  Similarity=0.382  Sum_probs=237.1

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecC-chhhhhhhhccCCCCcEEec
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGA-AIRELSQSLGQLALLSELEL   97 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l   97 (443)
                      ++|+.|++.++. .+.+|..+ ...+|+.|++.+|. ...++..+..+++|++|+++++ .++.+|. +..+++|++|++
T Consensus       589 ~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        589 PKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             cccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence            469999999887 67888766 57899999999877 4567888888999999999885 4667774 778899999999


Q ss_pred             CCCC----------CCCCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCCCCC
Q 046017           98 KNSS----------EFEYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKRFPK  161 (443)
Q Consensus        98 s~~~----------~l~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~~~~  161 (443)
                      ++|.          .+++|+.|++++|. ++.+|..+ ++++|+.|++++|..+     ...+|++|+++++ .++.+|.
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n-~i~~lP~  742 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET-AIEEFPS  742 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC-ccccccc
Confidence            9874          45889999999876 88899866 7999999999999765     4568999999985 5777886


Q ss_pred             C---CCCccccccCcc--cccccccccCCCCCccc-CCcccCCcccceeecccccccccccccccCCCCcceeeccCccC
Q 046017          162 I---ASCNKVGITGIK--RLSSTLRLKNCSSLESL-PSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSS  235 (443)
Q Consensus       162 ~---~~l~~L~l~~l~--~l~~~l~~~~~~~l~~l-p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~  235 (443)
                      .   .++..|.+..+.  .++.        ....+ +......++|+.|++++|...+.+|..++++++|+.|++++|..
T Consensus       743 ~~~l~~L~~L~l~~~~~~~l~~--------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~  814 (1153)
T PLN03210        743 NLRLENLDELILCEMKSEKLWE--------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN  814 (1153)
T ss_pred             cccccccccccccccchhhccc--------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence            5   445555552211  1110        00111 11123457899999999999999999999999999999999988


Q ss_pred             CCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccC-CCCCCCChhhh
Q 046017          236 FESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSN-NNLKRTPESLY  314 (443)
Q Consensus       236 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~-n~l~~lp~~l~  314 (443)
                      .+.+|..+ .+++|+.|++++|.....+|..   .++|++|++++|.++.+|.++..+++|+.|++++ +++..+|..+.
T Consensus       815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~  890 (1153)
T PLN03210        815 LETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS  890 (1153)
T ss_pred             cCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence            88888776 7899999999999887777653   4689999999999999999999999999999999 67889998889


Q ss_pred             CCCCCCeeeCCC-CCCCcc
Q 046017          315 QLSSLKYLKPFE-NNSDRI  332 (443)
Q Consensus       315 ~l~~L~~L~ls~-n~l~~l  332 (443)
                      .+++|+.+++++ ..++.+
T Consensus       891 ~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        891 KLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             cccCCCeeecCCCcccccc
Confidence            999999999998 445544

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-26  Score=231.63  Aligned_cols=328  Identities=23%  Similarity=0.274  Sum_probs=250.2

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      .+.+|+.|+++.|. +..+|.+..++.+|++|.|.+|. ...+|..+..+.+|++|++++|.+..+|..+..++.++.++
T Consensus        66 ~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~  143 (1081)
T KOG0618|consen   66 LLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELA  143 (1081)
T ss_pred             hHHHHhhcccchhh-HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHh
Confidence            45688999999876 67888888899999999998754 67888889999999999999998888877776666666665


Q ss_pred             cCCC--------------------------CCCCCccE-EEEeCCCCcccCc------------------cccCCCCCCE
Q 046017           97 LKNS--------------------------SEFEYLRV-LRVEGAAIRELPE------------------SIGKSTLLSE  131 (443)
Q Consensus        97 ls~~--------------------------~~l~~L~~-L~l~~n~~~~lp~------------------~l~~l~~L~~  131 (443)
                      .++|                          .....++. |++++|.++.+.-                  ..-.-++|+.
T Consensus       144 ~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~  223 (1081)
T KOG0618|consen  144 ASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTA  223 (1081)
T ss_pred             hhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchhe
Confidence            5544                          01133333 6777776541110                  0012356677


Q ss_pred             EeccCCCCC------CCCCcCEEEccCCCCCCCCCCC----CCCccccc--cCccccccccccc--------CCCCCccc
Q 046017          132 LELKNCSEL------KLKSLRRIKMSKCSNLKRFPKI----ASCNKVGI--TGIKRLSSTLRLK--------NCSSLESL  191 (443)
Q Consensus       132 L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~----~~l~~L~l--~~l~~l~~~l~~~--------~~~~l~~l  191 (443)
                      |+.++|...      ...+|+++++++ +.++.+|++    .+++.++.  |.+..+|..+...        ..+.+..+
T Consensus       224 L~a~~n~l~~~~~~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yi  302 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVHPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYI  302 (1081)
T ss_pred             eeeccCcceeeccccccccceeeecch-hhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhC
Confidence            777777655      567889999999 577788866    44555555  7777777654433        33567788


Q ss_pred             CCcccCCcccceeecccccccccccccc--------------------------cCCCCcceeeccCccCCCCCCchhhc
Q 046017          192 PSSLCMLKSLRFLETIACKKLERLPESL--------------------------GQLALLCELKMIKCSSFESLPSSLCM  245 (443)
Q Consensus       192 p~~~~~l~~L~~L~ls~n~~~~~~p~~l--------------------------~~l~~L~~L~ls~n~~~~~~p~~~~~  245 (443)
                      |.....+++|++|++..|++. .+|+.+                          ..++.|+.|++.+|.+....-+.+..
T Consensus       303 p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~  381 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN  381 (1081)
T ss_pred             CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence            988888999999999997653 333211                          12356788888888887776677889


Q ss_pred             CCCCCcEecccccccccCCC-CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeC
Q 046017          246 LKSLTPLAIIDCKIFKRLPN-ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP  324 (443)
Q Consensus       246 l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~l  324 (443)
                      ++.|+.|+|++|++ +.+|+ .+.+++.|++|+++||+++.+|..+..+..|++|...+|++..+| .+..++.|+.+|+
T Consensus       382 ~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             ccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEec
Confidence            99999999999998 55665 578899999999999999999999999999999999999999999 6999999999999


Q ss_pred             CCCCCCcc--CcccccCCCCCc-ccccccccccCCC
Q 046017          325 FENNSDRI--PEYLRSSPTSIP-SELRSLNLSVDSG  357 (443)
Q Consensus       325 s~n~l~~l--p~~~~~~~~~lp-~~L~~L~l~~N~l  357 (443)
                      +.|+|+.+  |..       .| +.|++||+++|.-
T Consensus       460 S~N~L~~~~l~~~-------~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  460 SCNNLSEVTLPEA-------LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             ccchhhhhhhhhh-------CCCcccceeeccCCcc
Confidence            99999654  332       56 8999999999953

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.7e-21  Score=197.54  Aligned_cols=252  Identities=25%  Similarity=0.243  Sum_probs=140.4

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecC
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELK   98 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls   98 (443)
                      ..-..|+++++. ++.+|..+.  ++|+.|++.+|.+. .+|.   .+++|++|++++|.++.+|..   .++|+.|+++
T Consensus       201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence            346688999987 457887665  48999999998754 4665   357899999999999988853   3456666666


Q ss_pred             CCC------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccC
Q 046017           99 NSS------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITG  172 (443)
Q Consensus        99 ~~~------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~  172 (443)
                      +|.      ...+|+.|++++|+++.+|..   .++|+.|++++|                 .++.+|..          
T Consensus       271 ~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-----------------~L~~Lp~l----------  320 (788)
T PRK15387        271 SNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-----------------QLASLPAL----------  320 (788)
T ss_pred             CCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCC-----------------ccccCCCC----------
Confidence            542      113445555555555555431   234444444443                 33333321          


Q ss_pred             cccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcE
Q 046017          173 IKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPL  252 (443)
Q Consensus       173 l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L  252 (443)
                                               ..+|+.|++++|.+. .+|..   ..+|+.|++++|.+. .+|..   .++|+.|
T Consensus       321 -------------------------p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L  367 (788)
T PRK15387        321 -------------------------PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKL  367 (788)
T ss_pred             -------------------------cccccccccccCccc-ccccc---ccccceEecCCCccC-CCCCC---Cccccee
Confidence                                     113445555554433 23321   134556666655443 23322   2345555


Q ss_pred             ecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCcc
Q 046017          253 AIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       253 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~l  332 (443)
                      ++++|.+. .+|..   ..+|+.|++++|.|+.+|..   .++|+.|++++|+++++|..   ..+|+.|++++|+|+.+
T Consensus       368 ~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~L  437 (788)
T PRK15387        368 WAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRL  437 (788)
T ss_pred             hhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccccc
Confidence            56655553 34432   23456666666666655542   24566666666666665542   23455566666666666


Q ss_pred             CcccccCCCCCcccccccccccCCCC
Q 046017          333 PEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       333 p~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      |..+..+     ++|+.|++++|.++
T Consensus       438 P~sl~~L-----~~L~~LdLs~N~Ls  458 (788)
T PRK15387        438 PESLIHL-----SSETTVNLEGNPLS  458 (788)
T ss_pred             ChHHhhc-----cCCCeEECCCCCCC
Confidence            6555543     45666666666544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.7e-21  Score=196.72  Aligned_cols=253  Identities=24%  Similarity=0.221  Sum_probs=182.2

Q ss_pred             CCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccc
Q 046017           44 SLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESI  123 (443)
Q Consensus        44 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l  123 (443)
                      .-..|+++++.+. .+|..+.  ++|+.|++.+|+++.+|..                 .++|++|++++|+++.+|.. 
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~l-----------------p~~Lk~LdLs~N~LtsLP~l-  260 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPAL-----------------PPELRTLEVSGNQLTSLPVL-  260 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCC-----------------CCCCcEEEecCCccCcccCc-
Confidence            4567777777644 5776654  3678888888877777642                 24566666667777777752 


Q ss_pred             cCCCCCCEEeccCCCCC----CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCc
Q 046017          124 GKSTLLSELELKNCSEL----KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLK  199 (443)
Q Consensus       124 ~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~  199 (443)
                        .++|+.|++++|.+.    ...+|+.|++++| .++                                .+|.   ..+
T Consensus       261 --p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N-~Lt--------------------------------~LP~---~p~  302 (788)
T PRK15387        261 --PPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLT--------------------------------SLPV---LPP  302 (788)
T ss_pred             --ccccceeeccCCchhhhhhchhhcCEEECcCC-ccc--------------------------------cccc---ccc
Confidence              457777777777544    2234556666653 232                                3333   235


Q ss_pred             ccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEec
Q 046017          200 SLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVK  279 (443)
Q Consensus       200 ~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  279 (443)
                      +|+.|++++|.+.+ +|..   ...|+.|++++|.+. .+|..   ..+|++|++++|++. .+|..   .++|+.|+++
T Consensus       303 ~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls  370 (788)
T PRK15387        303 GLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAY  370 (788)
T ss_pred             ccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCccC-CCCCC---Ccccceehhh
Confidence            79999999987664 5543   246888999998765 46642   358999999999985 46653   3578899999


Q ss_pred             CCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCc
Q 046017          280 GTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       280 ~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~  359 (443)
                      +|+++.+|..   ..+|+.|++++|+++.+|..   .++|+.|++++|+++.+|.        +|.+|+.|++++|.++.
T Consensus       371 ~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~--------l~~~L~~L~Ls~NqLt~  436 (788)
T PRK15387        371 NNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQLTR  436 (788)
T ss_pred             ccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc--------chhhhhhhhhccCcccc
Confidence            9999998864   36899999999999999864   3689999999999999987        45789999999999999


Q ss_pred             ccCChhhhhhHHHhcccccccc
Q 046017          360 LNLDLNKLSEIVKEGWMKQSFH  381 (443)
Q Consensus       360 l~~~~~~l~~l~~~~~~~~~~~  381 (443)
                      +|..+.++..+...+...+.+.
T Consensus       437 LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        437 LPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cChHHhhccCCCeEECCCCCCC
Confidence            9988877776644444444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2.2e-20  Score=192.88  Aligned_cols=251  Identities=23%  Similarity=0.315  Sum_probs=160.8

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecC
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELK   98 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls   98 (443)
                      .+.+.|+++++. ++.+|..+.  ++|+.|++++|.+. .+|..+.  ++|++|++++|.++.+|..+.           
T Consensus       178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-----------  240 (754)
T PRK15370        178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP-----------  240 (754)
T ss_pred             cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh-----------
Confidence            356778887776 456665443  46788888877654 5665543  478888888887777775442           


Q ss_pred             CCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccc
Q 046017           99 NSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS  178 (443)
Q Consensus        99 ~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~  178 (443)
                           ..|+.|++++|.+..+|..+.  .+|+.|++++|                 .++.+                   
T Consensus       241 -----~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-----------------~L~~L-------------------  277 (754)
T PRK15370        241 -----DTIQEMELSINRITELPERLP--SALQSLDLFHN-----------------KISCL-------------------  277 (754)
T ss_pred             -----ccccEEECcCCccCcCChhHh--CCCCEEECcCC-----------------ccCcc-------------------
Confidence                 134455555566677776543  35566665554                 22222                   


Q ss_pred             cccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccc
Q 046017          179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCK  258 (443)
Q Consensus       179 ~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~  258 (443)
                                   |..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.+.. +|..+  .++|+.|++++|.
T Consensus       278 -------------P~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~  336 (754)
T PRK15370        278 -------------PENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENA  336 (754)
T ss_pred             -------------ccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCc
Confidence                         22222  36777888776554 3454332  467778888776653 45433  3578888888887


Q ss_pred             ccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCccccc
Q 046017          259 IFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRS  338 (443)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~  338 (443)
                      +.+ +|..+.  ++|+.|++++|+++.+|..+.  ++|+.|++++|+++.+|..+.  ..|+.|++++|++..+|..+..
T Consensus       337 Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~  409 (754)
T PRK15370        337 LTS-LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPH  409 (754)
T ss_pred             ccc-CChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHH
Confidence            743 665443  678888888888887776553  678888888888888887654  3688888888888888775543


Q ss_pred             CCCCCcccccccccccCCCC
Q 046017          339 SPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       339 ~~~~lp~~L~~L~l~~N~l~  358 (443)
                      +.... +.+..|++.+|.+.
T Consensus       410 ~~~~~-~~l~~L~L~~Npls  428 (754)
T PRK15370        410 FRGEG-PQPTRIIVEYNPFS  428 (754)
T ss_pred             HhhcC-CCccEEEeeCCCcc
Confidence            31112 36778888888665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.8e-19  Score=186.20  Aligned_cols=227  Identities=23%  Similarity=0.312  Sum_probs=162.0

Q ss_pred             cccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCC-----C
Q 046017           68 TLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELK-----L  142 (443)
Q Consensus        68 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~-----l  142 (443)
                      +...|++++++++.+|..+.                +.|+.|++++|.++.+|..+.  ++|++|++++|.+..     .
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip----------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~  240 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP----------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP  240 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc----------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh
Confidence            45677777777777765432                234444555566666665442  456666666653331     1


Q ss_pred             CCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCC
Q 046017          143 KSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQL  222 (443)
Q Consensus       143 ~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l  222 (443)
                      .+|+.|++++| .+                                ..+|..+.  ++|+.|++++|++. .+|..+.  
T Consensus       241 ~~L~~L~Ls~N-~L--------------------------------~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--  282 (754)
T PRK15370        241 DTIQEMELSIN-RI--------------------------------TELPERLP--SALQSLDLFHNKIS-CLPENLP--  282 (754)
T ss_pred             ccccEEECcCC-cc--------------------------------CcCChhHh--CCCCEEECcCCccC-ccccccC--
Confidence            23444555443 22                                23343332  47999999987665 5777653  


Q ss_pred             CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEcc
Q 046017          223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELS  302 (443)
Q Consensus       223 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls  302 (443)
                      ++|+.|++++|.+. .+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|.++.+|..+.  ++|+.|+++
T Consensus       283 ~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls  354 (754)
T PRK15370        283 EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVS  354 (754)
T ss_pred             CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCccccCChhhc--CcccEEECC
Confidence            58999999998765 4665442  57999999999885 4665443  689999999999999997653  799999999


Q ss_pred             CCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCChhhh
Q 046017          303 NNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKL  367 (443)
Q Consensus       303 ~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l  367 (443)
                      +|+++.+|..+.  ++|++|++++|+|+.+|..       +|.+|+.|++++|.++.+|.++..+
T Consensus       355 ~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~-------l~~sL~~LdLs~N~L~~LP~sl~~~  410 (754)
T PRK15370        355 KNQITVLPETLP--PTITTLDVSRNALTNLPEN-------LPAALQIMQASRNNLVRLPESLPHF  410 (754)
T ss_pred             CCCCCcCChhhc--CCcCEEECCCCcCCCCCHh-------HHHHHHHHhhccCCcccCchhHHHH
Confidence            999999997663  6999999999999999986       4468999999999999998876544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.77  E-value=2e-20  Score=171.08  Aligned_cols=347  Identities=19%  Similarity=0.159  Sum_probs=237.6

Q ss_pred             CccCCCCCc---cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeec-Cchhhhh
Q 046017            8 CNIDGSTGI---ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIRELS   83 (443)
Q Consensus         8 c~~~g~~~~---~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~-n~l~~lp   83 (443)
                      |+-.|.+.+   -.+..+.++|..|++...-|.+|+.+++||.|||++|.+...-|.+|..++.|..|-+.+ |+|+.+|
T Consensus        53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             ccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence            444444432   235788899999995545557899999999999999998888899999999988877766 9999999


Q ss_pred             -hhhccCCCCcEEecCCCC----------CCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEE---
Q 046017           84 -QSLGQLALLSELELKNSS----------EFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRI---  148 (443)
Q Consensus        84 -~~~~~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L---  148 (443)
                       ..|+++..|+.|.+..|.          .+++|..|.+.+|.+..++. .+..+..++++.+..|......+|+.+   
T Consensus       133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~  212 (498)
T KOG4237|consen  133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD  212 (498)
T ss_pred             hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence             689999999999987753          67999999999999999988 678899999999999976633333322   


Q ss_pred             EccCCCCCCCCCCCCCCccccccCcc------------cccccccccCCCCCcccC-CcccCCcccceeecccccccccc
Q 046017          149 KMSKCSNLKRFPKIASCNKVGITGIK------------RLSSTLRLKNCSSLESLP-SSLCMLKSLRFLETIACKKLERL  215 (443)
Q Consensus       149 ~l~~~~~l~~~~~~~~l~~L~l~~l~------------~l~~~l~~~~~~~l~~lp-~~~~~l~~L~~L~ls~n~~~~~~  215 (443)
                      .........-+... .-..+.-..+.            ++|..+.. .|......| ..|..+++|+.|++++|.+.+.-
T Consensus       213 ~a~~~ietsgarc~-~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~-~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~  290 (498)
T KOG4237|consen  213 LAMNPIETSGARCV-SPYRLYYKRINQEDARKFLCSLESLPSRLSS-EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE  290 (498)
T ss_pred             Hhhchhhcccceec-chHHHHHHHhcccchhhhhhhHHhHHHhhcc-ccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence            11110000000000 00001111111            11111111 222222333 23788899999999999988888


Q ss_pred             cccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc------ccChh
Q 046017          216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR------EVPES  289 (443)
Q Consensus       216 p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~------~lp~~  289 (443)
                      +.+|.+...+++|.|..|++...-...|..+..|+.|+|.+|+++...|..|..+..|.+|.+-.|-+.      .+-+|
T Consensus       291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W  370 (498)
T KOG4237|consen  291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW  370 (498)
T ss_pred             hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH
Confidence            889999999999999998876555567888999999999999998888888988999999988776432      22222


Q ss_pred             c-----------cCCCCCCEEEccCCCCCCC----Chh---------hhCCCCCCe-eeCCCCCCCccCcccccCCCCCc
Q 046017          290 L-----------GYLSSLAKLELSNNNLKRT----PES---------LYQLSSLKY-LKPFENNSDRIPEYLRSSPTSIP  344 (443)
Q Consensus       290 ~-----------~~l~~L~~L~ls~n~l~~l----p~~---------l~~l~~L~~-L~ls~n~l~~lp~~~~~~~~~lp  344 (443)
                      +           .....++.+.+++..+...    |+.         -..++.+.+ ...|++.++.+|..       +|
T Consensus       371 lr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-------iP  443 (498)
T KOG4237|consen  371 LRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-------IP  443 (498)
T ss_pred             HhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-------CC
Confidence            2           1233567777777554422    221         123344433 34555666777764       66


Q ss_pred             ccccccccccCCCCcccCC
Q 046017          345 SELRSLNLSVDSGNSLNLD  363 (443)
Q Consensus       345 ~~L~~L~l~~N~l~~l~~~  363 (443)
                      ..-.++++.+|.++.+|..
T Consensus       444 ~d~telyl~gn~~~~vp~~  462 (498)
T KOG4237|consen  444 VDVTELYLDGNAITSVPDE  462 (498)
T ss_pred             chhHHHhcccchhcccCHH
Confidence            7777888888888887766

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2.3e-19  Score=146.27  Aligned_cols=162  Identities=22%  Similarity=0.328  Sum_probs=77.6

Q ss_pred             CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017          197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL  276 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  276 (443)
                      .+.+++.|.+++|++ ..+|..+..+.+|+.|++++|. ..++|..+..++.|+.|++.-|++ ..+|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh-hcCccccCCCchhhhh
Confidence            344444444554332 2233444444555555554432 234444444555555555554444 3344445555555555


Q ss_pred             EecCCCCc--ccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017          277 IVKGTAIR--EVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV  354 (443)
Q Consensus       277 ~l~~n~l~--~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~  354 (443)
                      |+.+|++.  .+|..|..++.|+.|.+++|.+.-+|..++.+++|+.|.+.+|.+-++|..++.+     ..|++|.+.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~l-----t~lrelhiqg  182 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL-----TRLRELHIQG  182 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHH-----HHHHHHhccc
Confidence            55555444  4444444444555555555555555544555555555555555555555544444     4455555555


Q ss_pred             CCCCcccCChhh
Q 046017          355 DSGNSLNLDLNK  366 (443)
Q Consensus       355 N~l~~l~~~~~~  366 (443)
                      |.++.+|..+.+
T Consensus       183 nrl~vlppel~~  194 (264)
T KOG0617|consen  183 NRLTVLPPELAN  194 (264)
T ss_pred             ceeeecChhhhh
Confidence            555555444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2.6e-19  Score=145.97  Aligned_cols=152  Identities=24%  Similarity=0.348  Sum_probs=137.5

Q ss_pred             CCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccc-cCC
Q 046017          186 SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK-RLP  264 (443)
Q Consensus       186 ~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~  264 (443)
                      +++..+|+.+..+.+|+.|++++|+ .+.+|..++.++.|+.|++.-|. ...+|..|+.++.|+.||+++|++.+ .+|
T Consensus        43 NKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lp  120 (264)
T KOG0617|consen   43 NKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLP  120 (264)
T ss_pred             CceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCC
Confidence            4556777889999999999998854 56789999999999999999865 45789999999999999999998865 578


Q ss_pred             CCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccC
Q 046017          265 NELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSS  339 (443)
Q Consensus       265 ~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~  339 (443)
                      ..|..++.|+.|++++|.+.-+|+.++.+++|+.|.+.+|.+-++|..++.+++|++|.+.+|+++.+|+.++.+
T Consensus       121 gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  121 GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence            889999999999999999999999999999999999999999999999999999999999999999999877654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=4.6e-18  Score=162.39  Aligned_cols=162  Identities=25%  Similarity=0.171  Sum_probs=98.6

Q ss_pred             ccCC-cccceeecccccccc----cccccccCCCCcceeeccCccCCCC----CCchhhcCCCCCcEeccccccccc---
Q 046017          195 LCML-KSLRFLETIACKKLE----RLPESLGQLALLCELKMIKCSSFES----LPSSLCMLKSLTPLAIIDCKIFKR---  262 (443)
Q Consensus       195 ~~~l-~~L~~L~ls~n~~~~----~~p~~l~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~---  262 (443)
                      +..+ ++|++|++++|.+.+    .++..+..+++|++|++++|.+.+.    ++..+...++|++|++++|.+.+.   
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            3344 567777777776652    2334455666777777777766532    233344556788888887776422   


Q ss_pred             -CCCCCCCCCCCceEEecCCCCcc--cC---hhc-cCCCCCCEEEccCCCCC-----CCChhhhCCCCCCeeeCCCCCCC
Q 046017          263 -LPNELGNLKCLAALIVKGTAIRE--VP---ESL-GYLSSLAKLELSNNNLK-----RTPESLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       263 -~~~~l~~l~~L~~L~l~~n~l~~--lp---~~~-~~l~~L~~L~ls~n~l~-----~lp~~l~~l~~L~~L~ls~n~l~  330 (443)
                       +...+..+++|++|++++|.++.  +.   ..+ ...+.|+.|++++|.++     .+...+..+++|+++++++|.++
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence             23345567788888888887763  11   111 12468888888888886     23455667788888888888886


Q ss_pred             ccCcccccCCCCCc-ccccccccccCC
Q 046017          331 RIPEYLRSSPTSIP-SELRSLNLSVDS  356 (443)
Q Consensus       331 ~lp~~~~~~~~~lp-~~L~~L~l~~N~  356 (443)
                      .-+.........-+ +.++++++.+|.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         292 EEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            44321111000011 567888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=6e-18  Score=161.54  Aligned_cols=156  Identities=24%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             cccceeecccccccc----cccccccCC-CCcceeeccCccCCC----CCCchhhcCCCCCcEeccccccccc----CCC
Q 046017          199 KSLRFLETIACKKLE----RLPESLGQL-ALLCELKMIKCSSFE----SLPSSLCMLKSLTPLAIIDCKIFKR----LPN  265 (443)
Q Consensus       199 ~~L~~L~ls~n~~~~----~~p~~l~~l-~~L~~L~ls~n~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~----~~~  265 (443)
                      ++|++|++++|...+    .+...+..+ ++|+.|++++|.+.+    .++..+..+++|++|++++|.+.+.    ++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            346666666665542    222334445 667777777776653    2233455556677777777766431    222


Q ss_pred             CCCCCCCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCCCC-Chhh-h----CCCCCCeeeCCCCCCC----
Q 046017          266 ELGNLKCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLKRT-PESL-Y----QLSSLKYLKPFENNSD----  330 (443)
Q Consensus       266 ~l~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~~l-p~~l-~----~l~~L~~L~ls~n~l~----  330 (443)
                      .+..+++|++|++++|.++     .++..+..+++|++|++++|.++.. ...+ .    ..+.|++|++++|.++    
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence            3344457777777777665     2334455666777777777766631 1111 1    2357777777777664    


Q ss_pred             -ccCcccccCCCCCcccccccccccCCCCc
Q 046017          331 -RIPEYLRSSPTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       331 -~lp~~~~~~~~~lp~~L~~L~l~~N~l~~  359 (443)
                       .+...+...     ++|+++++++|.++.
T Consensus       268 ~~l~~~~~~~-----~~L~~l~l~~N~l~~  292 (319)
T cd00116         268 KDLAEVLAEK-----ESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHHHhcC-----CCccEEECCCCCCcH
Confidence             122222221     467777777776553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.61  E-value=1.6e-17  Score=152.26  Aligned_cols=66  Identities=23%  Similarity=0.291  Sum_probs=34.7

Q ss_pred             CCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCcc
Q 046017          267 LGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       267 l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~l  332 (443)
                      |..+++|++|++++|+++.+ +.+|.....+++|.|..|++..+. ..|.+++.|+.|+|.+|+|+.+
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence            34455555555555555544 334555555555555555555443 3445555555555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.36  E-value=1.2e-14  Score=139.23  Aligned_cols=170  Identities=31%  Similarity=0.435  Sum_probs=129.0

Q ss_pred             CCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCC
Q 046017          186 SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN  265 (443)
Q Consensus       186 ~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  265 (443)
                      +.+.++|..+..+..|+.+.+..|. ...+|..+.++..|++|+|+.|.+ ..+|..++.+ -|+.|-+++|++ +.+|.
T Consensus        85 NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~l-pLkvli~sNNkl-~~lp~  160 (722)
T KOG0532|consen   85 NRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDL-PLKVLIVSNNKL-TSLPE  160 (722)
T ss_pred             cccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCChhhhcC-cceeEEEecCcc-ccCCc
Confidence            4556677777777778888887743 456777788888888888888654 4566666655 377788887776 66777


Q ss_pred             CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcc
Q 046017          266 ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPS  345 (443)
Q Consensus       266 ~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~  345 (443)
                      .++....|..|+.+.|.+..+|..++.+.+|+.|.+..|++..+|+.+..+ .|..||+|.|++..||.++..+     .
T Consensus       161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m-----~  234 (722)
T KOG0532|consen  161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKM-----R  234 (722)
T ss_pred             ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhh-----h
Confidence            777778888888888888888888888888888888888888888777744 5788888888888888888777     7


Q ss_pred             cccccccccCCCCcccCChh
Q 046017          346 ELRSLNLSVDSGNSLNLDLN  365 (443)
Q Consensus       346 ~L~~L~l~~N~l~~l~~~~~  365 (443)
                      .|++|-|.+|.+.+=|..+.
T Consensus       235 ~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  235 HLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             hheeeeeccCCCCCChHHHH
Confidence            88888888888877666554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=4.6e-14  Score=135.29  Aligned_cols=162  Identities=28%  Similarity=0.442  Sum_probs=93.8

Q ss_pred             ceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCC
Q 046017          202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT  281 (443)
Q Consensus       202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  281 (443)
                      ...+++.|.+ ..+|..+..+..|+.+.+..|. ...+|+.++.+..|++++++.|++ ..+|..+..++ |+.|.+++|
T Consensus        78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRF-SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhcccccc-ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecC
Confidence            3445555333 3355555555556666665543 334555666666666666666655 34555555544 666666666


Q ss_pred             CCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCccc
Q 046017          282 AIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLN  361 (443)
Q Consensus       282 ~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~  361 (443)
                      +++.+|..++..+.|..||.+.|++.++|..+..+.+|+.|.+..|++..+|+.+..+      .|..||++.|.+..||
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L------pLi~lDfScNkis~iP  227 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL------PLIRLDFSCNKISYLP  227 (722)
T ss_pred             ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC------ceeeeecccCceeecc
Confidence            6666666666556666666666666666666666666666666666666666655532      3566666666666666


Q ss_pred             CChhhhhhHHHh
Q 046017          362 LDLNKLSEIVKE  373 (443)
Q Consensus       362 ~~~~~l~~l~~~  373 (443)
                      .+|.++..|+..
T Consensus       228 v~fr~m~~Lq~l  239 (722)
T KOG0532|consen  228 VDFRKMRHLQVL  239 (722)
T ss_pred             hhhhhhhhheee
Confidence            666666555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=2.2e-11  Score=119.88  Aligned_cols=134  Identities=30%  Similarity=0.402  Sum_probs=65.1

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      ++.+++|+.|++++|++.. +|...+..+.|+.|++++|.+ ..+|.....+..|+++.+++|.. ...+..+..+.++.
T Consensus       159 ~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~  235 (394)
T COG4886         159 LRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLS  235 (394)
T ss_pred             hhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcc-eecchhhhhccccc
Confidence            4455555555555544332 333333445555555555432 23443333344455555555532 12333344455555


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCcc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~l  332 (443)
                      .+.+.+|++..++..+..+++++.|++++|.++.++. +..+.+++.|++++|.+..+
T Consensus       236 ~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         236 GLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence            5555555555444445555555555555555555544 45555555555555555433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.20  E-value=2.5e-11  Score=119.44  Aligned_cols=199  Identities=30%  Similarity=0.414  Sum_probs=135.8

Q ss_pred             EEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCC-CCcEEecCCCCCCCCccEEEEeCCCCcccCccccC
Q 046017           47 SLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLA-LLSELELKNSSEFEYLRVLRVEGAAIRELPESIGK  125 (443)
Q Consensus        47 ~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~-~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~  125 (443)
                      .+++..+.....+ ..+..++.++.|++.++.++.+|.....++ +|+.|+              +++|.+..+|..++.
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~--------------l~~N~i~~l~~~~~~  161 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELD--------------LSDNKIESLPSPLRN  161 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhccccc--------------ccccchhhhhhhhhc
Confidence            5777776643333 234566788899998888888887666553 444444              445777788766788


Q ss_pred             CCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceee
Q 046017          126 STLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLE  205 (443)
Q Consensus       126 l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~  205 (443)
                      +++|+.|++++|+                 +                                ..+|...+..+.|+.|+
T Consensus       162 l~~L~~L~l~~N~-----------------l--------------------------------~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         162 LPNLKNLDLSFND-----------------L--------------------------------SDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cccccccccCCch-----------------h--------------------------------hhhhhhhhhhhhhhhee
Confidence            8888888887762                 1                                22333333566777777


Q ss_pred             cccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc
Q 046017          206 TIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE  285 (443)
Q Consensus       206 ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~  285 (443)
                      +++|++ ..+|........|+++.+++|... ..+..+.++.++..+.+.+|++ ..++..++.+++++.|++++|.++.
T Consensus       193 ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         193 LSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             ccCCcc-ccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee-eeccchhccccccceeccccccccc
Confidence            777543 445555455566888888876432 3455667778888888777776 3346677788888888888888888


Q ss_pred             cChhccCCCCCCEEEccCCCCCCCChhh
Q 046017          286 VPESLGYLSSLAKLELSNNNLKRTPESL  313 (443)
Q Consensus       286 lp~~~~~l~~L~~L~ls~n~l~~lp~~l  313 (443)
                      ++. ++.+.+++.|++++|.+..++...
T Consensus       270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         270 ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccc-ccccCccCEEeccCccccccchhh
Confidence            877 788888888888888888665433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.17  E-value=1.2e-11  Score=110.15  Aligned_cols=129  Identities=21%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEcc
Q 046017          223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELS  302 (443)
Q Consensus       223 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls  302 (443)
                      ..|+++|+|+|.+ ..+.++..-.|.++.|+++.|.+...  ..+..+++|+.||+++|.++++..+-..+-+.+.|.++
T Consensus       284 q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            4455555555332 23334444445555555555544321  22444555555555555555444444444455555555


Q ss_pred             CCCCCCCChhhhCCCCCCeeeCCCCCCCccCc--ccccCCCCCcccccccccccCCCCcc
Q 046017          303 NNNLKRTPESLYQLSSLKYLKPFENNSDRIPE--YLRSSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       303 ~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~--~~~~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                      +|.+.++. .+..+-+|..||+++|+|+.+.+  .++.+     +.|+.+.+.+|.+..+
T Consensus       361 ~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  361 QNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCcccc
Confidence            55555443 24444555555555555544332  22222     3455555555544443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.16  E-value=2.2e-11  Score=128.52  Aligned_cols=85  Identities=27%  Similarity=0.325  Sum_probs=73.2

Q ss_pred             cCCCcceEEecCCCC-CCcCC-ccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcE
Q 046017           17 ERPCSCGLRLKNCSS-LESFP-SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSE   94 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~-~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~   94 (443)
                      ..+.|++|-+.++.. ...++ ..|..++.|++||+++|.-.+.+|..++.+-+||+|+++++.+..+|..+.++..|.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            456799999988863 34444 4477899999999999988889999999999999999999999999999999999999


Q ss_pred             EecCCCC
Q 046017           95 LELKNSS  101 (443)
Q Consensus        95 L~ls~~~  101 (443)
                      |++....
T Consensus       623 Lnl~~~~  629 (889)
T KOG4658|consen  623 LNLEVTG  629 (889)
T ss_pred             ecccccc
Confidence            9998754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.2e-11  Score=115.59  Aligned_cols=197  Identities=19%  Similarity=0.183  Sum_probs=120.1

Q ss_pred             CCCCccEEEEeCCCCcccC--ccccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCCCCCCCCCCCCcccc
Q 046017          102 EFEYLRVLRVEGAAIRELP--ESIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSNLKRFPKIASCNKVG  169 (443)
Q Consensus       102 ~l~~L~~L~l~~n~~~~lp--~~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~  169 (443)
                      ++.+|+...+.++.+...+  .....+++++.|||++|-+.          .+++|+.|+++.|...-....        
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--------  190 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--------  190 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--------
Confidence            4455566666656655444  24456777777777776332          666666666666422111100        


Q ss_pred             ccCcccccccccccCCCCCcccCCcccCCcccceeeccccccccc-ccccccCCCCcceeeccCccCCCCCCchhhcCCC
Q 046017          170 ITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLER-LPESLGQLALLCELKMIKCSSFESLPSSLCMLKS  248 (443)
Q Consensus       170 l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~-~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~  248 (443)
                                          ..   -..+++|+.|.+++|.+... +-..+..+|+|+.|++.+|.....-.....-+..
T Consensus       191 --------------------~~---~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  191 --------------------NT---TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             --------------------cc---hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence                                00   11445777888888877642 2223445678888888887533332233444567


Q ss_pred             CCcEecccccccccC-CCCCCCCCCCceEEecCCCCccc--Chh-----ccCCCCCCEEEccCCCCCCCC--hhhhCCCC
Q 046017          249 LTPLAIIDCKIFKRL-PNELGNLKCLAALIVKGTAIREV--PES-----LGYLSSLAKLELSNNNLKRTP--ESLYQLSS  318 (443)
Q Consensus       249 L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~l--p~~-----~~~l~~L~~L~ls~n~l~~lp--~~l~~l~~  318 (443)
                      |++|+|++|++...- -...+.++.|+.|+++.|.+.++  |+.     ...+++|++|++..|++..++  ..+..+++
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n  327 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN  327 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence            888888888774421 13456778888888888877733  433     345778888888888887665  35666777


Q ss_pred             CCeeeCCCCCC
Q 046017          319 LKYLKPFENNS  329 (443)
Q Consensus       319 L~~L~ls~n~l  329 (443)
                      |+.|.+..|.+
T Consensus       328 lk~l~~~~n~l  338 (505)
T KOG3207|consen  328 LKHLRITLNYL  338 (505)
T ss_pred             hhhhhcccccc
Confidence            77777777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.15  E-value=6.5e-12  Score=111.86  Aligned_cols=135  Identities=19%  Similarity=0.140  Sum_probs=112.7

Q ss_pred             cCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCce
Q 046017          196 CMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA  275 (443)
Q Consensus       196 ~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  275 (443)
                      .-++.|+++|+++|.+ ..+.++..-.|.++.|++|+|.+...  ..+..+++|+.||+++|.+. .+..+-..+.++++
T Consensus       281 dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            3456899999999654 45667777789999999999887643  34888999999999999874 45555567889999


Q ss_pred             EEecCCCCcccChhccCCCCCCEEEccCCCCCCCC--hhhhCCCCCCeeeCCCCCCCccCcc
Q 046017          276 LIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP--ESLYQLSSLKYLKPFENNSDRIPEY  335 (443)
Q Consensus       276 L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L~ls~n~l~~lp~~  335 (443)
                      |.+++|.|.++.. ++.+-+|..||+++|+|..+.  ..++++|.|+.+.+.+|.+..+|+.
T Consensus       357 L~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  357 LKLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             eehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            9999999998874 788899999999999999765  4789999999999999999888874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=6.2e-12  Score=114.33  Aligned_cols=249  Identities=19%  Similarity=0.168  Sum_probs=151.3

Q ss_pred             cccCCCCCcEEecccccccc----ccccccCCCCcccEEEeecC---ch-hhhhhhhccCCCCcEEecCCCCCCCCccEE
Q 046017           38 SLCVLKSLRSLQIIDCKKFE----RLLDELGNLETLLVLRVEGA---AI-RELSQSLGQLALLSELELKNSSEFEYLRVL  109 (443)
Q Consensus        38 ~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~l~~n---~l-~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L  109 (443)
                      .+..+..++.++|++|.+-.    .+...+.+.++|+..++++-   .+ .++|+.+..+.       ......++|+++
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~-------~aL~~~~~L~~l   97 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLS-------KALLGCPKLQKL   97 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHH-------HHHhcCCceeEe
Confidence            35567788888888887643    34445666778888888762   22 25554433210       000122455556


Q ss_pred             EEeCCCCc-----ccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCC---CCCccccccCccccccccc
Q 046017          110 RVEGAAIR-----ELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKI---ASCNKVGITGIKRLSSTLR  181 (443)
Q Consensus       110 ~l~~n~~~-----~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~---~~l~~L~l~~l~~l~~~l~  181 (443)
                      +||+|.++     .+-+-+..+..|++|+|.+|.+-                 .....   ..+..|..           
T Consensus        98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-----------------~~ag~~l~~al~~l~~-----------  149 (382)
T KOG1909|consen   98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-----------------PEAGGRLGRALFELAV-----------  149 (382)
T ss_pred             eccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-----------------hhHHHHHHHHHHHHHH-----------
Confidence            66666644     11222455667777777776322                 11000   00111110           


Q ss_pred             ccCCCCCcccCCcccCCcccceeecccccccc----cccccccCCCCcceeeccCccCCCC----CCchhhcCCCCCcEe
Q 046017          182 LKNCSSLESLPSSLCMLKSLRFLETIACKKLE----RLPESLGQLALLCELKMIKCSSFES----LPSSLCMLKSLTPLA  253 (443)
Q Consensus       182 ~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~----~~p~~l~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~  253 (443)
                                ..-.+.-++|+++....|....    .+...+...+.|+.+.++.|.+...    +...+..+++|++||
T Consensus       150 ----------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLd  219 (382)
T KOG1909|consen  150 ----------NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLD  219 (382)
T ss_pred             ----------HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeee
Confidence                      0113345678888887755432    1234456668888888888766432    234567889999999


Q ss_pred             ccccccccc----CCCCCCCCCCCceEEecCCCCc-----ccChhc-cCCCCCCEEEccCCCCCC-----CChhhhCCCC
Q 046017          254 IIDCKIFKR----LPNELGNLKCLAALIVKGTAIR-----EVPESL-GYLSSLAKLELSNNNLKR-----TPESLYQLSS  318 (443)
Q Consensus       254 l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~-----~lp~~~-~~l~~L~~L~ls~n~l~~-----lp~~l~~l~~  318 (443)
                      +.+|.+...    +...+..+++|++|++++|.++     .+-..+ ...++|++|.+.+|.|+.     +..++...+.
T Consensus       220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d  299 (382)
T KOG1909|consen  220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD  299 (382)
T ss_pred             cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence            999977542    3345667889999999999887     222222 346899999999999982     3456677899


Q ss_pred             CCeeeCCCCCCCc
Q 046017          319 LKYLKPFENNSDR  331 (443)
Q Consensus       319 L~~L~ls~n~l~~  331 (443)
                      |+.|+|++|+++.
T Consensus       300 L~kLnLngN~l~e  312 (382)
T KOG1909|consen  300 LEKLNLNGNRLGE  312 (382)
T ss_pred             hHHhcCCcccccc
Confidence            9999999999953

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.3e-11  Score=115.30  Aligned_cols=206  Identities=20%  Similarity=0.210  Sum_probs=141.0

Q ss_pred             ccCccccCCCCCCEEeccCCCCC---------CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCC
Q 046017          118 ELPESIGKSTLLSELELKNCSEL---------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSL  188 (443)
Q Consensus       118 ~lp~~l~~l~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l  188 (443)
                      ++..-=.++.+|++..|.++...         .+++++.||+++| .+..+                             
T Consensus       112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw-----------------------------  161 (505)
T KOG3207|consen  112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNW-----------------------------  161 (505)
T ss_pred             HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhH-----------------------------
Confidence            33333346778888888877543         5677777777773 11110                             


Q ss_pred             cccCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCC-CCCchhhcCCCCCcEecccccccccCCCC
Q 046017          189 ESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFE-SLPSSLCMLKSLTPLAIIDCKIFKRLPNE  266 (443)
Q Consensus       189 ~~lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  266 (443)
                      ..+-.-...+++|+.|+++.|.+...... .-..+++|+.|.++.|.+.. .+......+|+|+.|++.+|.....-...
T Consensus       162 ~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~  241 (505)
T KOG3207|consen  162 FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS  241 (505)
T ss_pred             HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence            11112245788999999999876532221 11257889999999998763 23334556899999999999643333334


Q ss_pred             CCCCCCCceEEecCCCCcccC--hhccCCCCCCEEEccCCCCCCC--Chh-----hhCCCCCCeeeCCCCCCCccCc--c
Q 046017          267 LGNLKCLAALIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRT--PES-----LYQLSSLKYLKPFENNSDRIPE--Y  335 (443)
Q Consensus       267 l~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~l--p~~-----l~~l~~L~~L~ls~n~l~~lp~--~  335 (443)
                      ..-+..|++|+|++|.+-..+  ...+.++.|..|+++.+.+.++  |+.     ...+++|++|+++.|++.+.+.  .
T Consensus       242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~  321 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH  321 (505)
T ss_pred             hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch
Confidence            455778999999999887665  5678899999999999999954  443     4678999999999999977664  2


Q ss_pred             cccCCCCCcccccccccccCCCC
Q 046017          336 LRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       336 ~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      +..     ..+|+.|.+..|.++
T Consensus       322 l~~-----l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  322 LRT-----LENLKHLRITLNYLN  339 (505)
T ss_pred             hhc-----cchhhhhhccccccc
Confidence            222     257777777776443

>PLN03150 hypothetical protein; Provisional

Probab=99.07  E-value=3.5e-10  Score=116.88  Aligned_cols=115  Identities=21%  Similarity=0.282  Sum_probs=96.2

Q ss_pred             ccCCCCCcc-----CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchh-hh
Q 046017            9 NIDGSTGIE-----RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR-EL   82 (443)
Q Consensus         9 ~~~g~~~~~-----~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~l   82 (443)
                      .|.|+.|..     ...++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.++ .+
T Consensus       403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i  482 (623)
T PLN03150        403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI  482 (623)
T ss_pred             ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence            799999942     124899999999998999999999999999999999999999999999999999999999998 88


Q ss_pred             hhhhccCCCCcEEecCCCCCCCCccEEEEeCCC-CcccCccccCC-CCCCEEeccCC
Q 046017           83 SQSLGQLALLSELELKNSSEFEYLRVLRVEGAA-IRELPESIGKS-TLLSELELKNC  137 (443)
Q Consensus        83 p~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~-~~~lp~~l~~l-~~L~~L~l~~n  137 (443)
                      |+.++++++|++|++++              |. .+.+|..+... .++..+++.+|
T Consensus       483 P~~l~~L~~L~~L~Ls~--------------N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        483 PESLGQLTSLRILNLNG--------------NSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             chHHhcCCCCCEEECcC--------------CcccccCChHHhhccccCceEEecCC
Confidence            99998888777777766              44 34778777553 45566777666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=5.8e-11  Score=101.15  Aligned_cols=84  Identities=31%  Similarity=0.339  Sum_probs=24.4

Q ss_pred             CCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhc-cCCCCCCEEEccCCCCCCCC--hhhhCCCCCCee
Q 046017          246 LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL-GYLSSLAKLELSNNNLKRTP--ESLYQLSSLKYL  322 (443)
Q Consensus       246 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L  322 (443)
                      +.+|+.|++++|.+.. + +.+..++.|++|++++|.|++++..+ ..+++|++|++++|+|..+.  ..+..+++|+.|
T Consensus        41 l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            4445555555554422 2 12444555555555555555554333 23455555555555555332  234455555555


Q ss_pred             eCCCCCCCc
Q 046017          323 KPFENNSDR  331 (443)
Q Consensus       323 ~ls~n~l~~  331 (443)
                      ++.+|.+..
T Consensus       119 ~L~~NPv~~  127 (175)
T PF14580_consen  119 SLEGNPVCE  127 (175)
T ss_dssp             E-TT-GGGG
T ss_pred             eccCCcccc
Confidence            555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=2.3e-11  Score=110.67  Aligned_cols=222  Identities=19%  Similarity=0.155  Sum_probs=146.1

Q ss_pred             cCCCcceEEecCCCCCC----cCCccccCCCCCcEEecccccccc----ccccc-------cCCCCcccEEEeecCchh-
Q 046017           17 ERPCSCGLRLKNCSSLE----SFPSSLCVLKSLRSLQIIDCKKFE----RLLDE-------LGNLETLLVLRVEGAAIR-   80 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~----~~p~~~~~l~~L~~L~L~~n~~~~----~~p~~-------~~~l~~L~~L~l~~n~l~-   80 (443)
                      .+..++.+++++|.+-.    .+...+.+.+.|+..++++ -++|    .+|+.       +...++|++||||+|.+. 
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            56789999999998544    3445577888999999987 3344    34443       456779999999999885 


Q ss_pred             ----hhhhhhccCCCCcEEecCCCC-----------------------CCCCccEEEEeCCCCcccC-----ccccCCCC
Q 046017           81 ----ELSQSLGQLALLSELELKNSS-----------------------EFEYLRVLRVEGAAIRELP-----ESIGKSTL  128 (443)
Q Consensus        81 ----~lp~~~~~l~~L~~L~ls~~~-----------------------~l~~L~~L~l~~n~~~~lp-----~~l~~l~~  128 (443)
                          .+-+.+.++..|++|.+.+|+                       .-++|+++..++|.+..-+     ..+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence                233556678888888888873                       1256666666666644332     23344455


Q ss_pred             CCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeeccc
Q 046017          129 LSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIA  208 (443)
Q Consensus       129 L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~  208 (443)
                      |+.+.+..|.+.                 .                           .-.+-+...+..+++|+.||+.+
T Consensus       187 leevr~~qN~I~-----------------~---------------------------eG~~al~eal~~~~~LevLdl~D  222 (382)
T KOG1909|consen  187 LEEVRLSQNGIR-----------------P---------------------------EGVTALAEALEHCPHLEVLDLRD  222 (382)
T ss_pred             cceEEEeccccc-----------------C---------------------------chhHHHHHHHHhCCcceeeeccc
Confidence            555555554211                 0                           11122334567788888888888


Q ss_pred             cccccc----ccccccCCCCcceeeccCccCCCCCCchh-----hcCCCCCcEeccccccccc----CCCCCCCCCCCce
Q 046017          209 CKKLER----LPESLGQLALLCELKMIKCSSFESLPSSL-----CMLKSLTPLAIIDCKIFKR----LPNELGNLKCLAA  275 (443)
Q Consensus       209 n~~~~~----~p~~l~~l~~L~~L~ls~n~~~~~~p~~~-----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~  275 (443)
                      |.+...    +...+..+++|+.|++++|.+...-...+     ...++|++|.+.+|.+...    +...+...+.|+.
T Consensus       223 Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k  302 (382)
T KOG1909|consen  223 NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK  302 (382)
T ss_pred             chhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence            776542    34456667888888888887755433222     2367889999998887542    1223455788999


Q ss_pred             EEecCCCC
Q 046017          276 LIVKGTAI  283 (443)
Q Consensus       276 L~l~~n~l  283 (443)
                      |++++|.+
T Consensus       303 LnLngN~l  310 (382)
T KOG1909|consen  303 LNLNGNRL  310 (382)
T ss_pred             hcCCcccc
Confidence            99999988

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=3.4e-10  Score=96.49  Aligned_cols=110  Identities=27%  Similarity=0.282  Sum_probs=43.7

Q ss_pred             hhcCCCCCcEecccccccccCCCCCC-CCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhh-hCCCCCC
Q 046017          243 LCMLKSLTPLAIIDCKIFKRLPNELG-NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESL-YQLSSLK  320 (443)
Q Consensus       243 ~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l-~~l~~L~  320 (443)
                      +.+...+++|+|.+|.+.. + +.++ .+.+|+.|++++|.|+.++. +..++.|++|++++|+|+++.+.+ ..+++|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            3455678999999998854 3 3455 57899999999999998874 778999999999999999997666 4699999


Q ss_pred             eeeCCCCCCCccCc--ccccCCCCCcccccccccccCCCCcc
Q 046017          321 YLKPFENNSDRIPE--YLRSSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       321 ~L~ls~n~l~~lp~--~~~~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                      +|++++|+|.++.+  .+..+     ++|+.|++.+|.++.-
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l-----~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSL-----PKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG------TT--EEE-TT-GGGGS
T ss_pred             EEECcCCcCCChHHhHHHHcC-----CCcceeeccCCcccch
Confidence            99999999977654  22222     6899999999987654

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=2.5e-09  Score=110.55  Aligned_cols=106  Identities=25%  Similarity=0.342  Sum_probs=91.4

Q ss_pred             CcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc-ccChhccCCCCCCEEEcc
Q 046017          224 LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELS  302 (443)
Q Consensus       224 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls  302 (443)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|+++ .+|..++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3778899999888899999999999999999999998889988999999999999999888 788889999999999999


Q ss_pred             CCCCC-CCChhhhCC-CCCCeeeCCCCCC
Q 046017          303 NNNLK-RTPESLYQL-SSLKYLKPFENNS  329 (443)
Q Consensus       303 ~n~l~-~lp~~l~~l-~~L~~L~ls~n~l  329 (443)
                      +|+++ .+|..+... .++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            99988 778777653 4677888888763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1.8e-09  Score=114.31  Aligned_cols=278  Identities=27%  Similarity=0.282  Sum_probs=165.2

Q ss_pred             CccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCch-hhhhhhhccCCCCc
Q 046017           15 GIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAI-RELSQSLGQLALLS   93 (443)
Q Consensus        15 ~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l-~~lp~~~~~l~~L~   93 (443)
                      +..++.|++||+++|...+.+|+.++++-+||+|++++.. ...+|..++++..|.+|++..+.- ..+|.....+.+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            4468999999999999889999999999999999999976 458999999999999999998654 35566666688888


Q ss_pred             EEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCCCCCCcc
Q 046017           94 ELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPKIASCNK  167 (443)
Q Consensus        94 ~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~~~l~~  167 (443)
                      +|.+..-.       .    ......-..+.++.+|+.+........      .+..|.++...-               
T Consensus       646 ~L~l~~s~-------~----~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l---------------  699 (889)
T KOG4658|consen  646 VLRLPRSA-------L----SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSL---------------  699 (889)
T ss_pred             EEEeeccc-------c----ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhh---------------
Confidence            88886521       0    001111112234444444444332110      111111111000               


Q ss_pred             ccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccC------CCCcceeeccCccCCCCCCc
Q 046017          168 VGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQ------LALLCELKMIKCSSFESLPS  241 (443)
Q Consensus       168 L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~------l~~L~~L~ls~n~~~~~~p~  241 (443)
                       .+             .+......+..+..+.+|+.|.+.+|............      ++++..+.+.+|.... .+.
T Consensus       700 -~~-------------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~  764 (889)
T KOG4658|consen  700 -SI-------------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLT  764 (889)
T ss_pred             -hh-------------cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccc
Confidence             00             00112233445667778888888887765432222111      2334444444443322 223


Q ss_pred             hhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCccc--ChhccCCCCCCEEEccCCCCCCCCh----hhhC
Q 046017          242 SLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV--PESLGYLSSLAKLELSNNNLKRTPE----SLYQ  315 (443)
Q Consensus       242 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l--p~~~~~l~~L~~L~ls~n~l~~lp~----~l~~  315 (443)
                      +....++|+.|.+.+|...+.+.+....+..++.+.+..+.+..+  -...+.++++..+.+++-.+..+..    .+..
T Consensus       765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~  844 (889)
T KOG4658|consen  765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK  844 (889)
T ss_pred             hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc
Confidence            334567888888888887776666666666666666666655533  2334556666666666544443321    2456


Q ss_pred             CCCCCeeeCCCC--CCCccCc
Q 046017          316 LSSLKYLKPFEN--NSDRIPE  334 (443)
Q Consensus       316 l~~L~~L~ls~n--~l~~lp~  334 (443)
                      +|.+.++.+.++  .+..+|.
T Consensus       845 ~P~~~~~~i~~~~~~~~~~~~  865 (889)
T KOG4658|consen  845 LPLLSTLTIVGCEEKLKEYPD  865 (889)
T ss_pred             CccccccceeccccceeecCC
Confidence            677777777663  3455554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.74  E-value=2e-09  Score=106.29  Aligned_cols=160  Identities=30%  Similarity=0.296  Sum_probs=95.8

Q ss_pred             ccCCcccceeeccccccccccc-ccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCC-
Q 046017          195 LCMLKSLRFLETIACKKLERLP-ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKC-  272 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p-~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-  272 (443)
                      +..++.|+.+++++|.+...-+ . ...+..++.+++.+|.+...  ..+..+..+..+++..|.+...-+  +..+.. 
T Consensus       158 ~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~  232 (414)
T KOG0531|consen  158 LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVML  232 (414)
T ss_pred             CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhH
Confidence            3346677778887766654433 1 45677778888887655432  233344455555777776643221  222333 


Q ss_pred             -CceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccc
Q 046017          273 -LAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLN  351 (443)
Q Consensus       273 -L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~  351 (443)
                       |+.+++++|.+..++..+..+..+..|++.+|++..+.. +...+.+..+....|.+.............-...++.++
T Consensus       233 ~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (414)
T KOG0531|consen  233 HLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT  311 (414)
T ss_pred             HHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence             788888888888776667778888888888888886543 455566667777776664221111110011225677777


Q ss_pred             cccCCCCcc
Q 046017          352 LSVDSGNSL  360 (443)
Q Consensus       352 l~~N~l~~l  360 (443)
                      +.+|.....
T Consensus       312 ~~~~~~~~~  320 (414)
T KOG0531|consen  312 LELNPIRKI  320 (414)
T ss_pred             cccCccccc
Confidence            877765543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=5.9e-10  Score=99.46  Aligned_cols=136  Identities=21%  Similarity=0.278  Sum_probs=85.7

Q ss_pred             CCcceEEecCCCCCC-cCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeec-Cchh--hhhhhhccCCCCcE
Q 046017           19 PCSCGLRLKNCSSLE-SFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIR--ELSQSLGQLALLSE   94 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~-n~l~--~lp~~~~~l~~L~~   94 (443)
                      ++|++|||+...+.. .+...++.+.+|+.|.+.++++.+.+-..+++-.+|+.|+++. ++++  .+.-.+.+++.|+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            357778887755332 2334456777888888888777777777777777888888887 5666  33355677788888


Q ss_pred             EecCCCCCC------------CCccEEEEeCCC--C--cccCccccCCCCCCEEeccCCCCC---------CCCCcCEEE
Q 046017           95 LELKNSSEF------------EYLRVLRVEGAA--I--RELPESIGKSTLLSELELKNCSEL---------KLKSLRRIK  149 (443)
Q Consensus        95 L~ls~~~~l------------~~L~~L~l~~n~--~--~~lp~~l~~l~~L~~L~l~~n~~~---------~l~~L~~L~  149 (443)
                      |++++|.-.            ++|+.|+++++.  +  ..+..-...+++|.+|||++|-.+         +++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            888877422            566666666655  1  122222245666666666666444         555666666


Q ss_pred             ccCCC
Q 046017          150 MSKCS  154 (443)
Q Consensus       150 l~~~~  154 (443)
                      ++.|.
T Consensus       345 lsRCY  349 (419)
T KOG2120|consen  345 LSRCY  349 (419)
T ss_pred             hhhhc
Confidence            66553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.67  E-value=2.5e-09  Score=105.69  Aligned_cols=151  Identities=25%  Similarity=0.183  Sum_probs=97.6

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCC-chhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP-SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL  273 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  273 (443)
                      +..++.|+.|++++|.+...  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..  ...+..+..+
T Consensus       136 l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l  210 (414)
T KOG0531|consen  136 LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKL  210 (414)
T ss_pred             hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHH
Confidence            34555688888888665442  345557888888888877654333 1 4667888888888887633  2334445556


Q ss_pred             ceEEecCCCCcccChhccCCCC--CCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccc
Q 046017          274 AALIVKGTAIREVPESLGYLSS--LAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLN  351 (443)
Q Consensus       274 ~~L~l~~n~l~~lp~~~~~l~~--L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~  351 (443)
                      ..+++..|.++.+.. +..+..  |+.+++++|++..++..+..+..+..|++.+|++..+...-      ....+..+.
T Consensus       211 ~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~------~~~~~~~~~  283 (414)
T KOG0531|consen  211 VLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLE------RLPKLSELW  283 (414)
T ss_pred             HHhhcccccceeccC-cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccccc------ccchHHHhc
Confidence            666777787775543 222333  78888888888877666778888888888888876554411      124555555


Q ss_pred             cccCCC
Q 046017          352 LSVDSG  357 (443)
Q Consensus       352 l~~N~l  357 (443)
                      ...|.+
T Consensus       284 ~~~~~~  289 (414)
T KOG0531|consen  284 LNDNKL  289 (414)
T ss_pred             cCcchh
Confidence            555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=3.1e-08  Score=69.29  Aligned_cols=61  Identities=25%  Similarity=0.252  Sum_probs=38.0

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCch
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAI   79 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l   79 (443)
                      ++|++|++++|.+...-+.+|..+++|++|++++|.+....|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4566777777653323234566677777777776666555555666777777777766653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.59  E-value=4.7e-08  Score=68.40  Aligned_cols=58  Identities=29%  Similarity=0.489  Sum_probs=30.5

Q ss_pred             CCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCC
Q 046017          248 SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNN  305 (443)
Q Consensus       248 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~  305 (443)
                      +|++|++++|++....+..+..+++|++|++++|+++.++ ..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555554333344555555555555555555443 244555555555555554

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.50  E-value=5.9e-09  Score=97.26  Aligned_cols=128  Identities=20%  Similarity=0.283  Sum_probs=76.1

Q ss_pred             CCcceEEecCCCCCCcCC--ccccCCCCCcEEeccccccccc--cccccCCCCcccEEEeec-Cchhhh--hhhhccCCC
Q 046017           19 PCSCGLRLKNCSSLESFP--SSLCVLKSLRSLQIIDCKKFER--LLDELGNLETLLVLRVEG-AAIREL--SQSLGQLAL   91 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~l~~-n~l~~l--p~~~~~l~~   91 (443)
                      ..|+.|.+.||+-.+.-+  .....++++++|++.+|..++.  .-..-..+++|++|++.. ..++..  -.....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            468889999887555333  3345788999999998875432  112223678899999888 555532  234456788


Q ss_pred             CcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCCCC
Q 046017           92 LSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSNLK  157 (443)
Q Consensus        92 L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~l~  157 (443)
                      |++|++++|...+.        +.++.+   ..++..++.+.+.+|...          ...-+.++++.+|+.++
T Consensus       218 L~~lNlSwc~qi~~--------~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT  282 (483)
T KOG4341|consen  218 LKYLNLSWCPQISG--------NGVQAL---QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT  282 (483)
T ss_pred             HHHhhhccCchhhc--------CcchHH---hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence            88888888764322        222222   234445555555555433          33344455555554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.50  E-value=2.8e-07  Score=88.15  Aligned_cols=135  Identities=27%  Similarity=0.440  Sum_probs=94.6

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+.+++.|++++| .+..+|.   -..+|+.|.+++|.....+|+.+  .++|++|++++|.....+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence            445688999999998 4555662   23469999999988888888765  36899999999955455664      577


Q ss_pred             eEEecCCCCc---ccChhccCCCCCCEEEccCCCCC---CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccc
Q 046017          275 ALIVKGTAIR---EVPESLGYLSSLAKLELSNNNLK---RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELR  348 (443)
Q Consensus       275 ~L~l~~n~l~---~lp~~~~~l~~L~~L~ls~n~l~---~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~  348 (443)
                      .|+++++...   .+|.      +|+.|.+.+++..   .+|..  -.++|++|+++++....+|+.       +|.+|+
T Consensus       116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~-------LP~SLk  180 (426)
T PRK15386        116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEK-------LPESLQ  180 (426)
T ss_pred             eEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCccc-------ccccCc
Confidence            8888776543   4554      5677777543311   22211  125899999998776666653       778999


Q ss_pred             ccccccCC
Q 046017          349 SLNLSVDS  356 (443)
Q Consensus       349 ~L~l~~N~  356 (443)
                      .|+++.+.
T Consensus       181 ~L~ls~n~  188 (426)
T PRK15386        181 SITLHIEQ  188 (426)
T ss_pred             EEEecccc
Confidence            99998763

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.42  E-value=7.7e-07  Score=85.21  Aligned_cols=124  Identities=27%  Similarity=0.392  Sum_probs=84.1

Q ss_pred             CCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccc--cc
Q 046017          184 NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI--FK  261 (443)
Q Consensus       184 ~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~--~~  261 (443)
                      +| .+..+|.   -..+|++|.+++|.....+|..+  .++|++|++++|.....+|.      +|+.|++.++..  .+
T Consensus        61 ~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~  128 (426)
T PRK15386         61 DC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIK  128 (426)
T ss_pred             CC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCCCcccc
Confidence            44 5677772   23479999999988888888655  36899999999866656653      577777876543  23


Q ss_pred             cCCCCCCCCCCCceEEecCCC-C--cccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCC
Q 046017          262 RLPNELGNLKCLAALIVKGTA-I--REVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       262 ~~~~~l~~l~~L~~L~l~~n~-l--~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l  329 (443)
                      .+|.      +|+.|.+.+++ .  ..+|.  .-.++|++|++++|....+|..+.  .+|+.|+++.+..
T Consensus       129 ~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~  189 (426)
T PRK15386        129 NVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQK  189 (426)
T ss_pred             cCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEeccccc
Confidence            3443      57777775432 1  12221  122689999999988777665444  5899999987643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.5e-08  Score=90.66  Aligned_cols=60  Identities=20%  Similarity=0.279  Sum_probs=37.4

Q ss_pred             cCCcccceeeccccccccc-ccccccCCCCcceeeccCccCCCCCCch---hhcCCCCCcEecccc
Q 046017          196 CMLKSLRFLETIACKKLER-LPESLGQLALLCELKMIKCSSFESLPSS---LCMLKSLTPLAIIDC  257 (443)
Q Consensus       196 ~~l~~L~~L~ls~n~~~~~-~p~~l~~l~~L~~L~ls~n~~~~~~p~~---~~~l~~L~~L~l~~n  257 (443)
                      ..+++|.+||+++|..+.. ....+.+++.|++|.++.|..  .+|+.   +...|+|.+|++.+|
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            4667777777777655432 334556677777777777753  34443   345567777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.38  E-value=2.9e-07  Score=59.17  Aligned_cols=39  Identities=33%  Similarity=0.459  Sum_probs=19.4

Q ss_pred             CCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccC
Q 046017          295 SLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIP  333 (443)
Q Consensus       295 ~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp  333 (443)
                      +|++|++++|+|+.+|+.++.+++|++|++++|++++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            455555555555555544555555555555555555443

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=5.7e-09  Score=103.53  Aligned_cols=86  Identities=29%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCC
Q 046017          241 SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLK  320 (443)
Q Consensus       241 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~  320 (443)
                      +++.-++.++.|+|++|++...  +.+..++.|++|||++|.++.+|..-..--.|+.|.+++|.++++- .+.++.+|+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~  257 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLY  257 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhh
Confidence            3444444455555555544321  1344445555555555555544421111112555555555555443 244555555


Q ss_pred             eeeCCCCCC
Q 046017          321 YLKPFENNS  329 (443)
Q Consensus       321 ~L~ls~n~l  329 (443)
                      .||+++|-|
T Consensus       258 ~LDlsyNll  266 (1096)
T KOG1859|consen  258 GLDLSYNLL  266 (1096)
T ss_pred             ccchhHhhh
Confidence            555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.35  E-value=2.8e-08  Score=78.93  Aligned_cols=88  Identities=18%  Similarity=0.321  Sum_probs=48.8

Q ss_pred             CCCceEEecCCCCcccChhccC-CCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccc
Q 046017          271 KCLAALIVKGTAIREVPESLGY-LSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRS  349 (443)
Q Consensus       271 ~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~  349 (443)
                      ..|+..++++|.+.++|+.+.. ++.++.|++++|.|+.+|..+..++.|+.|+++.|.+...|..+..+     .++-.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L-----~~l~~  127 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPL-----IKLDM  127 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHH-----HhHHH
Confidence            3455555666666655554433 23556666666666666655666666666666666665555554443     44555


Q ss_pred             cccccCCCCcccCC
Q 046017          350 LNLSVDSGNSLNLD  363 (443)
Q Consensus       350 L~l~~N~l~~l~~~  363 (443)
                      |+.-+|....+|.+
T Consensus       128 Lds~~na~~eid~d  141 (177)
T KOG4579|consen  128 LDSPENARAEIDVD  141 (177)
T ss_pred             hcCCCCccccCcHH
Confidence            55555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.35  E-value=2.5e-08  Score=79.14  Aligned_cols=112  Identities=25%  Similarity=0.333  Sum_probs=87.2

Q ss_pred             CcceeeccCccCCCCCCch---hhcCCCCCcEecccccccccCCCCC-CCCCCCceEEecCCCCcccChhccCCCCCCEE
Q 046017          224 LLCELKMIKCSSFESLPSS---LCMLKSLTPLAIIDCKIFKRLPNEL-GNLKCLAALIVKGTAIREVPESLGYLSSLAKL  299 (443)
Q Consensus       224 ~L~~L~ls~n~~~~~~p~~---~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L  299 (443)
                      .+..++|+.|.+. .+++.   +.....|+..++++|.+ ..+|+.| ..++.+++|++++|+|+.+|..+..++.|+.|
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            4556677776543 23333   33445677778888887 4455544 45668999999999999999999999999999


Q ss_pred             EccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccc
Q 046017          300 ELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLR  337 (443)
Q Consensus       300 ~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~  337 (443)
                      +++.|.+...|..+..+.++..|+..+|.+..||..+.
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence            99999999999888889999999999999999988753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.32  E-value=7.2e-07  Score=57.35  Aligned_cols=41  Identities=32%  Similarity=0.456  Sum_probs=33.1

Q ss_pred             CCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh
Q 046017          271 KCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE  311 (443)
Q Consensus       271 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~  311 (443)
                      ++|++|++++|+|+.+|+.+..+++|+.|++++|++++++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46888999999998888888889999999999998887753

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=1.1e-07  Score=94.79  Aligned_cols=105  Identities=22%  Similarity=0.262  Sum_probs=82.8

Q ss_pred             CCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCC
Q 046017          247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPF  325 (443)
Q Consensus       247 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls  325 (443)
                      ..|...+.+.|++ ..+..++.-++.|+.|+|+.|+++++. .+..++.|+.|||++|.+..+|. ...++. |..|.++
T Consensus       164 n~L~~a~fsyN~L-~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  164 NKLATASFSYNRL-VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hhHhhhhcchhhH-HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            4577777888877 345566777889999999999999877 68889999999999999998884 233444 9999999


Q ss_pred             CCCCCccCcccccCCCCCcccccccccccCCCCcc
Q 046017          326 ENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       326 ~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                      +|.++++-. +.++     .+|+.||+++|.+...
T Consensus       241 nN~l~tL~g-ie~L-----ksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  241 NNALTTLRG-IENL-----KSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             ccHHHhhhh-HHhh-----hhhhccchhHhhhhcc
Confidence            999987754 3444     7899999999966543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=5.4e-07  Score=80.85  Aligned_cols=40  Identities=13%  Similarity=0.180  Sum_probs=29.1

Q ss_pred             CCCCCcEEecccccccc--ccccccCCCCcccEEEeecCchh
Q 046017           41 VLKSLRSLQIIDCKKFE--RLLDELGNLETLLVLRVEGAAIR   80 (443)
Q Consensus        41 ~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~   80 (443)
                      ..+.++.+||.+|.+.+  .+...+.++|.|++|+++.|.+.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            56778888888877654  55555667888888888887765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=1.7e-06  Score=77.74  Aligned_cols=62  Identities=24%  Similarity=0.259  Sum_probs=38.4

Q ss_pred             cCCCCCcEEecccccccc-ccccccC-CCCcccEEEeecCchh---hhhhhhccCCCCcEEecCCCC
Q 046017           40 CVLKSLRSLQIIDCKKFE-RLLDELG-NLETLLVLRVEGAAIR---ELSQSLGQLALLSELELKNSS  101 (443)
Q Consensus        40 ~~l~~L~~L~L~~n~~~~-~~p~~~~-~l~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~ls~~~  101 (443)
                      .....++.|.+.++.+-. .....|+ ..+.++.+|+.+|.+.   ++-..+.+++.|++|+++.|+
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~  108 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS  108 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence            334455566666654432 1111222 5678899999999886   555666777777777777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.00  E-value=7.2e-07  Score=83.63  Aligned_cols=86  Identities=21%  Similarity=0.252  Sum_probs=46.2

Q ss_pred             CCCcEEecccccccc--ccccccCCCCcccEEEeecC-chhh--hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc
Q 046017           43 KSLRSLQIIDCKKFE--RLLDELGNLETLLVLRVEGA-AIRE--LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR  117 (443)
Q Consensus        43 ~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~  117 (443)
                      ..||.|.++++.-.+  .+-..-.+++++++|++.+. ++++  +-..-..+++|++|++..|..++...        +.
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~--------Lk  209 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS--------LK  209 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH--------HH
Confidence            357888888876443  22223446777787777763 3331  11222345666666666654321100        11


Q ss_pred             ccCccccCCCCCCEEeccCCCC
Q 046017          118 ELPESIGKSTLLSELELKNCSE  139 (443)
Q Consensus       118 ~lp~~l~~l~~L~~L~l~~n~~  139 (443)
                      .+   ...+++|++|+++.|.-
T Consensus       210 ~l---a~gC~kL~~lNlSwc~q  228 (483)
T KOG4341|consen  210 YL---AEGCRKLKYLNLSWCPQ  228 (483)
T ss_pred             HH---HHhhhhHHHhhhccCch
Confidence            11   23567777777777643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.90  E-value=1.9e-06  Score=76.53  Aligned_cols=82  Identities=16%  Similarity=0.124  Sum_probs=44.7

Q ss_pred             CCCcceEEecCCCCCCcC----CccccCCCCCcEEecccccccc----ccc-------cccCCCCcccEEEeecCchh-h
Q 046017           18 RPCSCGLRLKNCSSLESF----PSSLCVLKSLRSLQIIDCKKFE----RLL-------DELGNLETLLVLRVEGAAIR-E   81 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~----p~~~~~l~~L~~L~L~~n~~~~----~~p-------~~~~~l~~L~~L~l~~n~l~-~   81 (443)
                      +..++.++||+|.+.++-    ...+.+-.+|++.++++ -+++    .++       .++-++++|+..++|.|.+. .
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            456777777777654432    23345566777777765 2232    222       23456777777777777664 3


Q ss_pred             hh----hhhccCCCCcEEecCCC
Q 046017           82 LS----QSLGQLALLSELELKNS  100 (443)
Q Consensus        82 lp----~~~~~l~~L~~L~ls~~  100 (443)
                      .|    +.+++-+.|++|.+++|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecC
Confidence            33    33344444444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.89  E-value=5.3e-06  Score=86.06  Aligned_cols=121  Identities=21%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             CCCcceEEecCCCCCC-cCCcccc-CCCCCcEEecccccccc-ccccccCCCCcccEEEeecCchhhhhhhhccCCCCcE
Q 046017           18 RPCSCGLRLKNCSSLE-SFPSSLC-VLKSLRSLQIIDCKKFE-RLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSE   94 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~-~~p~~~~-~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~   94 (443)
                      -.+|++||++|..... .-|..++ .+|.|++|.+.+-.+.. .+.....++++|+.||+|+++++.+ .+++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            3578899998865332 3333444 57899999998755432 3444566889999999999888877 67888888888


Q ss_pred             EecCCCC-----------CCCCccEEEEeCCCCcccCc-------cccCCCCCCEEeccCCCC
Q 046017           95 LELKNSS-----------EFEYLRVLRVEGAAIRELPE-------SIGKSTLLSELELKNCSE  139 (443)
Q Consensus        95 L~ls~~~-----------~l~~L~~L~l~~n~~~~lp~-------~l~~l~~L~~L~l~~n~~  139 (443)
                      |.+.+..           +|++|+.||+|.......+.       .-..+|+|+.||.++...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            8776642           55777777777655332221       112366777777766543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.69  E-value=4.5e-06  Score=74.14  Aligned_cols=137  Identities=16%  Similarity=0.060  Sum_probs=72.2

Q ss_pred             CCcccceeeccccccccccc-----ccccCCCCcceeeccCccCCCCC-----CchhhcCCCCCcEeccccccccc----
Q 046017          197 MLKSLRFLETIACKKLERLP-----ESLGQLALLCELKMIKCSSFESL-----PSSLCMLKSLTPLAIIDCKIFKR----  262 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~~~~p-----~~l~~l~~L~~L~ls~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~----  262 (443)
                      +-+.|++.....|.+.. .|     ..+..-..|+.+.+..|.+...-     -..+..+.+|+.||+.+|.++..    
T Consensus       155 ~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         155 DKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             cCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            33456666665544322 11     11222245666666666543221     11233456777777777766432    


Q ss_pred             CCCCCCCCCCCceEEecCCCCcc-----cChhc--cCCCCCCEEEccCCCCCC-------CChh-hhCCCCCCeeeCCCC
Q 046017          263 LPNELGNLKCLAALIVKGTAIRE-----VPESL--GYLSSLAKLELSNNNLKR-------TPES-LYQLSSLKYLKPFEN  327 (443)
Q Consensus       263 ~~~~l~~l~~L~~L~l~~n~l~~-----lp~~~--~~l~~L~~L~ls~n~l~~-------lp~~-l~~l~~L~~L~ls~n  327 (443)
                      +...+..++.|++|.+.+|-++.     +-..+  ...++|..|-..+|.+..       +|.. -..+|-|..|.+.+|
T Consensus       234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN  313 (388)
T COG5238         234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN  313 (388)
T ss_pred             HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence            12234455667777777776551     11111  234677777777776551       2221 245677778888888


Q ss_pred             CCCccCc
Q 046017          328 NSDRIPE  334 (443)
Q Consensus       328 ~l~~lp~  334 (443)
                      ++.....
T Consensus       314 r~~E~~d  320 (388)
T COG5238         314 RIKELAD  320 (388)
T ss_pred             cchhHHH
Confidence            8866544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=4.1e-05  Score=65.28  Aligned_cols=103  Identities=23%  Similarity=0.375  Sum_probs=61.8

Q ss_pred             CCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccC-CCCCCEEEccCCCCCCCC--hhhhCCCCCCeeeC
Q 046017          248 SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGY-LSSLAKLELSNNNLKRTP--ESLYQLSSLKYLKP  324 (443)
Q Consensus       248 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L~l  324 (443)
                      +...+|+++|.+.. + ..+..++.|.+|.+.+|.|+.+.+.+.. +++|+.|.+.+|.|..+-  ..+..+|+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            45566777776632 2 3456667777777777777766555544 356777777777777543  34667777777777


Q ss_pred             CCCCCCccCcccccCCCCCcccccccccc
Q 046017          325 FENNSDRIPEYLRSSPTSIPSELRSLNLS  353 (443)
Q Consensus       325 s~n~l~~lp~~~~~~~~~lp~~L~~L~l~  353 (443)
                      -+|.++.-...-....-.+ ++|+.||..
T Consensus       121 l~Npv~~k~~YR~yvl~kl-p~l~~LDF~  148 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKL-PSLRTLDFQ  148 (233)
T ss_pred             cCCchhcccCceeEEEEec-CcceEeehh
Confidence            7777765543211110112 466666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.46  E-value=4.5e-05  Score=79.30  Aligned_cols=108  Identities=21%  Similarity=0.238  Sum_probs=82.6

Q ss_pred             CccCCCCCccCCCcceEEecCCCCCC-cCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh--h
Q 046017            8 CNIDGSTGIERPCSCGLRLKNCSSLE-SFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS--Q   84 (443)
Q Consensus         8 c~~~g~~~~~~~~L~~L~ls~~~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~   84 (443)
                      +.|...-+..+|.|++|.+++-.+.. ++.....++++|+.||+++.++.. + ..++++++|+.|.+.+=.+..-.  .
T Consensus       137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~  214 (699)
T KOG3665|consen  137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLI  214 (699)
T ss_pred             ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHH
Confidence            45655455578999999999865433 344456689999999999977543 3 67889999999999986665322  4


Q ss_pred             hhccCCCCcEEecCCCC----------------CCCCccEEEEeCCCCc
Q 046017           85 SLGQLALLSELELKNSS----------------EFEYLRVLRVEGAAIR  117 (443)
Q Consensus        85 ~~~~l~~L~~L~ls~~~----------------~l~~L~~L~l~~n~~~  117 (443)
                      .+.++++|+.||+|.-.                .+|+|+.||.+++.+.
T Consensus       215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            56789999999999742                5799999999998854

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.39  E-value=0.00036  Score=59.69  Aligned_cols=54  Identities=22%  Similarity=0.298  Sum_probs=28.3

Q ss_pred             CCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccC-CCCcEEecCC
Q 046017           44 SLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQL-ALLSELELKN   99 (443)
Q Consensus        44 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l-~~L~~L~ls~   99 (443)
                      ....+||++|.+. .++ .|..++.|.+|.+.+|.|+.+...+..+ ++|+.|.+.+
T Consensus        43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            4456666666532 222 3445666666666666666555444432 3344444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=0.00012  Score=65.07  Aligned_cols=101  Identities=24%  Similarity=0.262  Sum_probs=51.1

Q ss_pred             CCCcceeeccCccCCCCCCchhhcCCCCCcEecccc--cccccCCCCCCCCCCCceEEecCCCCcc---cChhccCCCCC
Q 046017          222 LALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDC--KIFKRLPNELGNLKCLAALIVKGTAIRE---VPESLGYLSSL  296 (443)
Q Consensus       222 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L  296 (443)
                      +..|+.|.+.++.++..  ..+-.+++|+.|.++.|  +..+.++.....+++|++|++++|++..   +++ +..+.+|
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence            34455555554443321  12334566666666666  4444444444445666666666665552   221 3445556


Q ss_pred             CEEEccCCCCCCCC----hhhhCCCCCCeeeCC
Q 046017          297 AKLELSNNNLKRTP----ESLYQLSSLKYLKPF  325 (443)
Q Consensus       297 ~~L~ls~n~l~~lp----~~l~~l~~L~~L~ls  325 (443)
                      ..|++.+|..+.+-    ..+.-+++|++||-.
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            66666666555432    234445555555533

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.08  E-value=0.00028  Score=62.75  Aligned_cols=62  Identities=21%  Similarity=0.132  Sum_probs=31.7

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEecccc--ccccccccccCCCCcccEEEeecCchh
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDC--KKFERLLDELGNLETLLVLRVEGAAIR   80 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n--~~~~~~p~~~~~l~~L~~L~l~~n~l~   80 (443)
                      .+..++.|++.+++.++ +. .+-.+++|+.|.++.|  +..+.++.-...+++|++|++++|++.
T Consensus        41 ~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34455555555544221 11 1334556666666666  444444433444566666666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.66  E-value=0.0083  Score=48.54  Aligned_cols=119  Identities=12%  Similarity=0.116  Sum_probs=48.2

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      |..+++|+.+.+.. .....-...|..+++|+.+.+.++ ....-...|..+++++.+.+.+ .....-...+..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            55666777777654 333323345666667777777653 3332333455665677777754 22222223455566677


Q ss_pred             eEEecCCCCcccCh-hccCCCCCCEEEccCCCCCCCC-hhhhCCCCC
Q 046017          275 ALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLKRTP-ESLYQLSSL  319 (443)
Q Consensus       275 ~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L  319 (443)
                      .+++..+ +..++. .+... .|+.+.+.. .+..++ ..+.++++|
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            6666554 444432 23443 666666654 344443 345555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.65  E-value=0.00031  Score=70.89  Aligned_cols=105  Identities=28%  Similarity=0.360  Sum_probs=55.9

Q ss_pred             CCCCCcEEeccccccccc--cccccCCCCcccEEEeecC--chhh----hhhhhccCCCCcEEecCCCCCCCCccEEEEe
Q 046017           41 VLKSLRSLQIIDCKKFER--LLDELGNLETLLVLRVEGA--AIRE----LSQSLGQLALLSELELKNSSEFEYLRVLRVE  112 (443)
Q Consensus        41 ~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~l~~n--~l~~----lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~  112 (443)
                      .++.|+.|.+.++.....  +-.....+++|+.|+++++  ....    .......+++|+.|+++++..        ++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--------is  257 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL--------VT  257 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc--------cC
Confidence            467777777777755443  3344557778888887752  1111    112233445566666655432        11


Q ss_pred             CCCCcccCccccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCCC
Q 046017          113 GAAIRELPESIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSNL  156 (443)
Q Consensus       113 ~n~~~~lp~~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~l  156 (443)
                      +..+..+   ...+++|++|.+.+|..+          .+++|++|++++|..+
T Consensus       258 d~~l~~l---~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  258 DIGLSAL---ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             chhHHHH---HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            1111111   122566777766666532          5666777777776554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=8e-05  Score=66.61  Aligned_cols=81  Identities=20%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh--hhhccCCCCcE
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS--QSLGQLALLSE   94 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~   94 (443)
                      .+.+++.|++-||+ +..+.- ..+|+.|++|.|+-|++...-  .+..+++|+.|+|+.|.|..+.  ..+.++++|+.
T Consensus        17 dl~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            46678889999987 444432 558999999999988865433  3778899999999999988665  44567777777


Q ss_pred             EecCCCC
Q 046017           95 LELKNSS  101 (443)
Q Consensus        95 L~ls~~~  101 (443)
                      |.|..|+
T Consensus        93 LWL~ENP   99 (388)
T KOG2123|consen   93 LWLDENP   99 (388)
T ss_pred             HhhccCC
Confidence            7776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.38  E-value=0.00057  Score=68.96  Aligned_cols=129  Identities=26%  Similarity=0.286  Sum_probs=72.7

Q ss_pred             CCCcccEEEeecC-chhh--hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-
Q 046017           65 NLETLLVLRVEGA-AIRE--LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-  140 (443)
Q Consensus        65 ~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-  140 (443)
                      .++.|+.|.+.+. .++.  +-......+.|+.|+++++.....        ..-.........+++|+.|+++.+... 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT--------LSPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc--------cchhHhhhhhhhcCCcCccchhhhhccC
Confidence            4688888888773 4443  445556677788888776310000        000001112345688888888888733 


Q ss_pred             ---------CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccc
Q 046017          141 ---------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKK  211 (443)
Q Consensus       141 ---------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~  211 (443)
                               .+++|++|.+.+|..++.-                              .+-.....+++|++|++++|..
T Consensus       258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~------------------------------gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  258 DIGLSALASRCPNLETLSLSNCSNLTDE------------------------------GLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             chhHHHHHhhCCCcceEccCCCCccchh------------------------------HHHHHHHhcCcccEEeeecCcc
Confidence                     4788999888777543211                              1111134567788888888776


Q ss_pred             ccc--ccccccCCCCcceeecc
Q 046017          212 LER--LPESLGQLALLCELKMI  231 (443)
Q Consensus       212 ~~~--~p~~l~~l~~L~~L~ls  231 (443)
                      ...  +.....++++|+.|.+.
T Consensus       308 ~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  308 LTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             chHHHHHHHHHhCcchhhhhhh
Confidence            422  22223345555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=0.0005  Score=61.67  Aligned_cols=81  Identities=23%  Similarity=0.248  Sum_probs=63.8

Q ss_pred             CCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCC--hhhhCCCCCCeee
Q 046017          246 LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP--ESLYQLSSLKYLK  323 (443)
Q Consensus       246 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L~  323 (443)
                      +.+.+.|+..+|.+.. + .....|+.|++|.|+-|+|+++.+ +..|+.|++|+|..|.|.++.  ..+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4567788888887743 2 234678889999999999988765 677889999999999988775  4678889999999


Q ss_pred             CCCCCC
Q 046017          324 PFENNS  329 (443)
Q Consensus       324 ls~n~l  329 (443)
                      |..|.-
T Consensus        95 L~ENPC  100 (388)
T KOG2123|consen   95 LDENPC  100 (388)
T ss_pred             hccCCc
Confidence            888765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.00  E-value=0.0028  Score=33.85  Aligned_cols=16  Identities=19%  Similarity=0.376  Sum_probs=6.5

Q ss_pred             ccEEEeecCchhhhhh
Q 046017           69 LLVLRVEGAAIRELSQ   84 (443)
Q Consensus        69 L~~L~l~~n~l~~lp~   84 (443)
                      |++||+++|.++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3344444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.87  E-value=0.004  Score=33.21  Aligned_cols=17  Identities=29%  Similarity=0.522  Sum_probs=8.3

Q ss_pred             CceEEecCCCCcccChh
Q 046017          273 LAALIVKGTAIREVPES  289 (443)
Q Consensus       273 L~~L~l~~n~l~~lp~~  289 (443)
                      |++|++++|+++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44455555544444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.83  E-value=0.03  Score=45.17  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=51.4

Q ss_pred             cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCC
Q 046017          218 SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSL  296 (443)
Q Consensus       218 ~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L  296 (443)
                      .|.++++|+.+.+.. .....-...|..+++|+.+.+.++ +...-...+.++++++.+.+.+ .+..++. .+..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            456666777777764 333333445666677777777664 3332233466666777777765 4444432 34456777


Q ss_pred             CEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCc
Q 046017          297 AKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPE  334 (443)
Q Consensus       297 ~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~  334 (443)
                      +.+++..+ +..++ ..+.++ .|+.+.+.. .+..++.
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~  119 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE  119 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC
Confidence            77777654 55443 345555 677776654 4444444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.34  E-value=0.0088  Score=29.61  Aligned_cols=13  Identities=23%  Similarity=0.179  Sum_probs=3.9

Q ss_pred             CCeeeCCCCCCCc
Q 046017          319 LKYLKPFENNSDR  331 (443)
Q Consensus       319 L~~L~ls~n~l~~  331 (443)
                      |++|++++|++++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            3334444433333

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.11  E-value=0.013  Score=28.98  Aligned_cols=15  Identities=47%  Similarity=0.618  Sum_probs=5.9

Q ss_pred             CCCEEEccCCCCCCC
Q 046017          295 SLAKLELSNNNLKRT  309 (443)
Q Consensus       295 ~L~~L~ls~n~l~~l  309 (443)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            445555555554444

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.22  E-value=0.04  Score=30.58  Aligned_cols=20  Identities=20%  Similarity=0.218  Sum_probs=12.0

Q ss_pred             CCCCeeeCCCCCCCccCccc
Q 046017          317 SSLKYLKPFENNSDRIPEYL  336 (443)
Q Consensus       317 ~~L~~L~ls~n~l~~lp~~~  336 (443)
                      ++|++|++++|+|+.+|...
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.22  E-value=0.04  Score=30.58  Aligned_cols=20  Identities=20%  Similarity=0.218  Sum_probs=12.0

Q ss_pred             CCCCeeeCCCCCCCccCccc
Q 046017          317 SSLKYLKPFENNSDRIPEYL  336 (443)
Q Consensus       317 ~~L~~L~ls~n~l~~lp~~~  336 (443)
                      ++|++|++++|+|+.+|...
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.58  E-value=0.0035  Score=54.96  Aligned_cols=84  Identities=17%  Similarity=0.152  Sum_probs=54.5

Q ss_pred             cCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeC
Q 046017          245 MLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP  324 (443)
Q Consensus       245 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~l  324 (443)
                      .....+.||++.|++. .+-..+..++.|..|+++.|++..+|..++....+..+++..|..+..|.++...++++++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            3445566666666552 233445556666677777777777777666666777777777777777777777777777777


Q ss_pred             CCCCC
Q 046017          325 FENNS  329 (443)
Q Consensus       325 s~n~l  329 (443)
                      .+|.+
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            66654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.58  E-value=0.0031  Score=62.98  Aligned_cols=165  Identities=25%  Similarity=0.244  Sum_probs=93.6

Q ss_pred             CcccCCcccceeeccccccccc----ccccccCC-CCcceeeccCccCCCC----CCchhhcCCCCCcEecccccccc--
Q 046017          193 SSLCMLKSLRFLETIACKKLER----LPESLGQL-ALLCELKMIKCSSFES----LPSSLCMLKSLTPLAIIDCKIFK--  261 (443)
Q Consensus       193 ~~~~~l~~L~~L~ls~n~~~~~----~p~~l~~l-~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~--  261 (443)
                      ..+.....|+.|++++|++...    +-..+... ..+++|++..|.....    +.+.+.....++.++++.|.+..  
T Consensus       109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g  188 (478)
T KOG4308|consen  109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG  188 (478)
T ss_pred             HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence            3345556777788887766532    11122222 4566677777666443    34455556777788887776631  


Q ss_pred             --cCCCCC----CCCCCCceEEecCCCCcc-----cChhccCCCC-CCEEEccCCCCCCC-----ChhhhCC-CCCCeee
Q 046017          262 --RLPNEL----GNLKCLAALIVKGTAIRE-----VPESLGYLSS-LAKLELSNNNLKRT-----PESLYQL-SSLKYLK  323 (443)
Q Consensus       262 --~~~~~l----~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~-L~~L~ls~n~l~~l-----p~~l~~l-~~L~~L~  323 (443)
                        .++..+    ....++++|.+++|.++.     +...+...++ +..|++..|.+...     .+.+..+ ..+++++
T Consensus       189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~  268 (478)
T KOG4308|consen  189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD  268 (478)
T ss_pred             hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence              112222    235677888888887662     2233444555 66688888877632     3445555 6778888


Q ss_pred             CCCCCCCcc-CcccccCCCCCcccccccccccCCCC
Q 046017          324 PFENNSDRI-PEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       324 ls~n~l~~l-p~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      ++.|.|++- ...+....... +.++++.+++|.++
T Consensus       269 l~~nsi~~~~~~~L~~~l~~~-~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  269 LSRNSITEKGVRDLAEVLVSC-RQLEELSLSNNPLT  303 (478)
T ss_pred             hhcCCccccchHHHHHHHhhh-HHHHHhhcccCccc
Confidence            888877432 12222211112 37778888777554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.39  E-value=0.14  Score=28.34  Aligned_cols=20  Identities=45%  Similarity=0.687  Sum_probs=14.8

Q ss_pred             CCCCCEEEccCCCCCCCChh
Q 046017          293 LSSLAKLELSNNNLKRTPES  312 (443)
Q Consensus       293 l~~L~~L~ls~n~l~~lp~~  312 (443)
                      +++|+.|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35778888888888877754

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.39  E-value=0.14  Score=28.34  Aligned_cols=20  Identities=45%  Similarity=0.687  Sum_probs=14.8

Q ss_pred             CCCCCEEEccCCCCCCCChh
Q 046017          293 LSSLAKLELSNNNLKRTPES  312 (443)
Q Consensus       293 l~~L~~L~ls~n~l~~lp~~  312 (443)
                      +++|+.|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35778888888888877754

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.99  E-value=0.0016  Score=64.93  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=18.3

Q ss_pred             ccEEEEeCCCCcc-----cCccccCCCCCCEEeccCCC
Q 046017          106 LRVLRVEGAAIRE-----LPESIGKSTLLSELELKNCS  138 (443)
Q Consensus       106 L~~L~l~~n~~~~-----lp~~l~~l~~L~~L~l~~n~  138 (443)
                      +..+.+.+|.++.     +-..+...+.|+.|++++|.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~  126 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN  126 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC
Confidence            4555555555442     23334556677777777763

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.58  E-value=0.0041  Score=54.55  Aligned_cols=86  Identities=17%  Similarity=0.264  Sum_probs=69.4

Q ss_pred             CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcc
Q 046017          266 ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPS  345 (443)
Q Consensus       266 ~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~  345 (443)
                      .+.....-+.||++.|++..+-..+.-++.|..|+++.|++..+|..+.+...++.+++..|..+..|.+....     +
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~-----~  111 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE-----P  111 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc-----C
Confidence            35566778888888888877776677778888888888888888888888888888888888888888877765     6


Q ss_pred             cccccccccCC
Q 046017          346 ELRSLNLSVDS  356 (443)
Q Consensus       346 ~L~~L~l~~N~  356 (443)
                      .++++++.+|.
T Consensus       112 ~~k~~e~k~~~  122 (326)
T KOG0473|consen  112 HPKKNEQKKTE  122 (326)
T ss_pred             CcchhhhccCc
Confidence            78888887774

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.50  E-value=0.096  Score=28.96  Aligned_cols=19  Identities=37%  Similarity=0.452  Sum_probs=15.6

Q ss_pred             cccccccccccCCCCcccC
Q 046017          344 PSELRSLNLSVDSGNSLNL  362 (443)
Q Consensus       344 p~~L~~L~l~~N~l~~l~~  362 (443)
                      |++|+.|++++|+++++|.
T Consensus         1 P~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        1 PPSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             CcccceeecCCCccccCcc
Confidence            4678888999988888875

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.37  E-value=0.31  Score=26.94  Aligned_cols=18  Identities=39%  Similarity=0.453  Sum_probs=13.9

Q ss_pred             CCCCeeeCCCCCCCccCc
Q 046017          317 SSLKYLKPFENNSDRIPE  334 (443)
Q Consensus       317 ~~L~~L~ls~n~l~~lp~  334 (443)
                      ++|++|++++|+|+++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            367788888888888876

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.70  E-value=0.11  Score=44.77  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=17.3

Q ss_pred             cceeeccCccCCCCCCchhhcCCCCCcEecccccc
Q 046017          225 LCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI  259 (443)
Q Consensus       225 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~  259 (443)
                      ++.++-+++.+..+--+.+..++.++.|.+.+|.-
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~  137 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY  137 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence            44555555444444334444555555555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.51  E-value=0.21  Score=43.19  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=16.9

Q ss_pred             cccEEEeecCchhhh-hhhhccCCCCcEEecCCCC
Q 046017           68 TLLVLRVEGAAIREL-SQSLGQLALLSELELKNSS  101 (443)
Q Consensus        68 ~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~~~  101 (443)
                      .++.+|-++..|... -+.+..++.++.|.+.+|.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            345556666555422 1444455555555555543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.32  E-value=1.2  Score=24.77  Aligned_cols=16  Identities=25%  Similarity=0.335  Sum_probs=9.0

Q ss_pred             CCCCeeeCCCCCCCcc
Q 046017          317 SSLKYLKPFENNSDRI  332 (443)
Q Consensus       317 ~~L~~L~ls~n~l~~l  332 (443)
                      ++|+.|++++|+|+.|
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4555666666665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	443
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-40
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  146 bits (370), Expect = 2e-40
 Identities = 57/311 (18%), Positives = 115/311 (36%), Gaps = 28/311 (9%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
           L  +  ++L  +   L   +   +      +          N     +    G A++  +
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNA----DRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 84  QSLGQLAL--LSELELKNSS---------EFEYLRVLRVEGAAIRELPESIGKSTLLSEL 132
             L          LEL++              +L+ + ++ A + ELP+++ +   L  L
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETL 132

Query: 133 ELKNCS--EL-----KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS--TLRLK 183
            L       L      L  LR + +  C  L   P+    +       + L +  +LRL 
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRL- 190

Query: 184 NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSL 243
             + + SLP+S+  L++L+ L+ I    L  L  ++  L  L EL +  C++  + P   
Sbjct: 191 EWTGIRSLPASIANLQNLKSLK-IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 244 CMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG-TAIREVPESLGYLSSLAKLELS 302
                L  L + DC     LP ++  L  L  L ++G   +  +P  +  L +   + + 
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 303 NNNLKRTPESL 313
            +   +  +  
Sbjct: 310 PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 6e-27
 Identities = 57/281 (20%), Positives = 102/281 (36%), Gaps = 41/281 (14%)

Query: 106 LRVLRVEGA-AIRELPESIGKSTLLSELELKNCS---ELKLKSLRRIKMSKCSNLKRFPK 161
              L  +G+ A+R   + + +       +             +  +I+      LK    
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD 73

Query: 162 -IASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLG 220
            +    + G          L L++   L   P     L  L+ +  I    L  LP+++ 
Sbjct: 74  LLEDATQPGRV-------ALELRSVP-LPQFPDQAFRLSHLQHMT-IDAAGLMELPDTMQ 124

Query: 221 QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGN---------LK 271
           Q A L  L + +     +LP+S+  L  L  L+I  C     LP  L +         L 
Sbjct: 125 QFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 272 CLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDR 331
            L +L ++ T IR +P S+  L +L  L++ N+ L     +++ L  L+ L      +  
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA-- 241

Query: 332 IPEYLRSSPTSIP--SELRSLNLSVDSGNSLNLDLNKLSEI 370
               LR+ P      + L+ L L          D + L  +
Sbjct: 242 ----LRNYPPIFGGRAPLKRLILK---------DCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 9e-21
 Identities = 42/237 (17%), Positives = 81/237 (34%), Gaps = 35/237 (14%)

Query: 142 LKSLRRIKMSKCSNLKRFPK-IASCNKVGITGIKRLSSTLRLKN----------CSSLES 190
                 +     + L+ +   ++   +       R  S  R  N            +L++
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 191 LPSSL--CMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKS 248
               L          LE +    L + P+   +L+ L  + +   +    LP ++     
Sbjct: 71  TADLLEDATQPGRVALE-LRSVPLPQFPDQAFRLSHLQHMTI-DAAGLMELPDTMQQFAG 128

Query: 249 LTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT-AIREVPESLG---------YLSSLAK 298
           L  L +    + + LP  + +L  L  L ++    + E+PE L           L +L  
Sbjct: 129 LETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 299 LELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIP--SELRSLNLS 353
           L L    ++  P S+  L +LK LK   +        L +   +I    +L  L+L 
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSP-------LSALGPAIHHLPKLEELDLR 237

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 94.2 bits (234), Expect = 7e-21
 Identities = 78/360 (21%), Positives = 105/360 (29%), Gaps = 62/360 (17%)

Query: 18  RPCSC-GLRLKNCS--SLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRV 74
           R C   G  + N     L + P  L     + +L I D      L      L TL    V
Sbjct: 35  RACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNN-LTSLPALPPELRTL---EV 88

Query: 75  EGAAIRELSQSLGQLALLSELELKN---SSEFEYLRVLRVEGAAIRELPESIGKSTLLSE 131
            G  +  L      L  LS          +    L  L + G  +  LP        L E
Sbjct: 89  SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG---LQE 145

Query: 132 LELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESL 191
           L + +                   L   P               L   L   N   L SL
Sbjct: 146 LSVSDN-----------------QLASLPA----------LPSELCK-LWAYNNQ-LTSL 176

Query: 192 PSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTP 251
           P     L+ L    +++  +L  LP    +L  L        +   SLP+    LK L  
Sbjct: 177 PMLPSGLQEL----SVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKEL-- 226

Query: 252 LAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE 311
             I+       LP     LK L   +V G  +  +P        L  L +  N L R PE
Sbjct: 227 --IVSGNRLTSLPVLPSELKEL---MVSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPE 278

Query: 312 SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIV 371
           SL  LSS   +    N             TS P     +     +G S   +   L    
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.2 bits (229), Expect = 5e-20
 Identities = 67/396 (16%), Positives = 127/396 (32%), Gaps = 74/396 (18%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQI---------IDCKKFERLLDELGNLETLLVLRV 74
           + L NC ++   P  L  L  L+SL I              + RL D+      + +  +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 75  EGAAIREL--SQSLGQLALLSELEL-KNS----SEFEY---LRVLRVEGAAIRELPESIG 124
               + E   S SL ++  L  L+   N       F     L  L+++   I E+PE   
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 125 KST-LLSELELKNCSELKLKSL-RRIKMSKCSNLKRFPKIASCNKVGITGI-KRLSSTLR 181
             T  +  L   +    KLK +           +       S NK  I    + +S ++ 
Sbjct: 616 AFTDQVEGLGFSHN---KLKYIPNIFNAKSVYVMGSV--DFSYNK--IGSEGRNISCSMD 668

Query: 182 LKNCSSLESL-----------PSSLCMLKSLRFL-------ETIACKKLERLPESLGQLA 223
                +  ++                    +  +        +I    L+    +     
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 224 LLCELKMIKCSSFESLPSSL--CMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT 281
           LL  +  ++ +   SL        L  L+ + +     F   P +  N   L A  ++  
Sbjct: 729 LLTTID-LRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQ 786

Query: 282 AI-------REVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPE 334
                    R+ P  +    SL +L++ +N++++  E L     L  L   +N +  I  
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISID- 843

Query: 335 YLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI 370
                 TS+   + +            L  +K  +I
Sbjct: 844 -----VTSVCPYIEA--------GMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 86.1 bits (213), Expect = 4e-18
 Identities = 61/384 (15%), Positives = 114/384 (29%), Gaps = 54/384 (14%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSL--------QIIDCKKFERLLDELGNLETLLVLRVE 75
           L L    +    P ++  L  L+ L                E L  ++       +    
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 76  GAAIRELSQSLGQLALLSELELKN-------SSEFEYLRVLRVEGA--AIRELPESIGKS 126
                +  Q L    LL +   +N             L+  ++      I  + ++I + 
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 127 TLLSELELKNC---SELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLK 183
           T L  +   N     +                 +             + +K L+  + L 
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL-------SWSNLKDLT-DVELY 499

Query: 184 NCSSLESLPSSLCMLKSLRFLE---------TIACKKLERLPESLGQLALLCELKMIKCS 234
           NC ++  LP  L  L  L+ L                  RL +       +    M   +
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 235 SFESLPSS--LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGY 292
             E  P+S  L  +  L  L  +  K+ + L    G    L  L +    I E+PE    
Sbjct: 560 -LEEFPASASLQKMVKLGLLDCVHNKV-RHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCA 616

Query: 293 -LSSLAKLELSNNNLKRTPE--SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRS 349
               +  L  S+N LK  P   +   +  +  +  F  N       + S   +I   +  
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD-FSYNK------IGSEGRNISCSMDD 669

Query: 350 LNLSVDSGNSLNLDLNKLSEIVKE 373
                 + +++ L  N++ +   E
Sbjct: 670 YKGI--NASTVTLSYNEIQKFPTE 691

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.4 bits (206), Expect = 3e-17
 Identities = 54/378 (14%), Positives = 111/378 (29%), Gaps = 59/378 (15%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
                    E+   S   LK L  +++ +C    +L D L +L  L  L +        +
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 84  QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES--IGKSTLLSELELKNCSELK 141
           Q       L++ E         +++  +    + E P S  + K   L  L+  +    K
Sbjct: 532 QLKADWTRLADDEDTGPK----IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN---K 584

Query: 142 LKSLRRIKMSKCSNLKRFPKIASCNKVGITGI-----KRLSS--TLRLKNCSSLESLPS- 193
           ++ L          L         N+  I  I             L   +   L+ +P+ 
Sbjct: 585 VRHLEAF--GTNVKLTDL--KLDYNQ--IEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNI 637

Query: 194 -SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESL-----------PS 241
            +   +  +  ++  +  K+     ++      C +   K  +  ++             
Sbjct: 638 FNAKSVYVMGSVD-FSYNKIGSEGRNIS-----CSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 242 SLCMLKSLT-------PLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL--GY 292
                  ++        +  I     K       N   L  + ++   +  + +      
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751

Query: 293 LSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNL 352
           L  L+ +++S N     P      S LK               LR  PT I +   SL  
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-TTCPSL-- 808

Query: 353 SVDSGNSLNLDLNKLSEI 370
                  L +  N + ++
Sbjct: 809 -----IQLQIGSNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 6e-15
 Identities = 54/323 (16%), Positives = 109/323 (33%), Gaps = 44/323 (13%)

Query: 62  ELGNLETLLVLRVEGAAIR-ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELP 120
           +L N   +  L + G   +  +  ++GQL  L  L     SE    R+   E        
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 121 ESIGKSTL-LSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSST 179
           E   +  +   ++ L     L L  L +  +++   +K   K +  +         L  T
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS---------LKDT 428

Query: 180 LRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESL 239
                 + +  +  ++  L  L+ +   A         ++       +        +E+ 
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQII-YFANSPFTYDNIAVDWEDANSDY----AKQYENE 483

Query: 240 PSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL----------IVKGTAIREVPES 289
             S   LK LT + + +C    +LP+ L +L  L +L                   + + 
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 290 LGYLSSLAKLELSNNNLKRTPES--LYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSEL 347
                 +    +  NNL+  P S  L ++  L  L    +N  ++          + +  
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD-CVHN--KV--------RHLEAFG 592

Query: 348 RSLNLSVDSGNSLNLDLNKLSEI 370
            ++ L+      L LD N++ EI
Sbjct: 593 TNVKLTD-----LKLDYNQIEEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 20/160 (12%), Positives = 39/160 (24%), Gaps = 27/160 (16%)

Query: 233 CSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGY 292
               +     L     +T L++       R+P+ +G L  L  L     +        G 
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 293 LSSLAKLELSNNNLKR---TPESLYQLSSLKYLKPFENNSDRIPEYLRSSP--------- 340
                 +     +  R       L     L      ++  +R PE               
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 341 ---------TSIPSELRSL-NLSVDSGNSLNLDLNKLSEI 370
                    T I   ++ L  L +     +    +  +  
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQI-----IYFANSPFTYD 463

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 72/356 (20%), Positives = 120/356 (33%), Gaps = 51/356 (14%)

Query: 26  LKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS 85
           L++ S+L   P     +KS         +         G    + V R+     R+    
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA-HE 75

Query: 86  LGQLALLSELELKN-SSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKL-K 143
           L     L+ L L +      +L  L     ++ ELPE       L        +   L  
Sbjct: 76  LE----LNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 144 SLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF 203
            L  + +S    L++ P++ + + +           + + N S L+ LP     L+ +  
Sbjct: 132 LLEYLGVSNN-QLEKLPELQNSSFL---------KIIDVDNNS-LKKLPDLPPSLEFI-- 178

Query: 204 LETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRL 263
                  +LE LPE L  L  L  +     S  + LP     L+S+      +  +    
Sbjct: 179 --AAGNNQLEELPE-LQNLPFLTAIYADNNS-LKKLPDLPLSLESIV---AGNNIL--EE 229

Query: 264 PNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLK 323
             EL NL  L  +      ++ +P+      SL  L + +N L   PE    L+ L    
Sbjct: 230 LPELQNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVS- 285

Query: 324 PFENNSDRIPEYLRS---------SPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI 370
             EN    + E   +            S+     SL         LN+  NKL E+
Sbjct: 286 --ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL-------EELNVSNNKLIEL 332

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 80/361 (22%), Positives = 136/361 (37%), Gaps = 63/361 (17%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
           L L N   L S P     L+SL       C     L +   +L++LLV      A+ +L 
Sbjct: 76  LELNNLG-LSSLPELPPHLESLV----ASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 84  QSLGQLALLSELELKNSSEFEY---LRVLRVEGAAIRELPESIGKSTLL--SELELKNCS 138
             L  L  +S  +L+   E +    L+++ V+  ++++LP+       +     +L+   
Sbjct: 131 PLLEYL-GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 189

Query: 139 EL-KLKSLRRIKMSKCSNLKRFPK--------IASCNK-VGITGIKRLSS--TLRLKNCS 186
           EL  L  L  I      +LK+ P         +A  N    +  ++ L    T+   N  
Sbjct: 190 ELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 248

Query: 187 SLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCML 246
            L++LP     L++L   +      L  LPE    L  L   +    S    LP +L  L
Sbjct: 249 -LKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSE-NIFSGLSELPPNLYYL 302

Query: 247 --------------KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGY 292
                          SL  L + + K+   LP     L+    LI     + EVPE    
Sbjct: 303 NASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPPRLE---RLIASFNHLAEVPELPQ- 357

Query: 293 LSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNL 352
             +L +L +  N L+  P+    +  L+      ++   +PE        +P  L+ L++
Sbjct: 358 --NLKQLHVEYNPLREFPDIPESVEDLRMN----SHLAEVPE--------LPQNLKQLHV 403

Query: 353 S 353
            
Sbjct: 404 E 404

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 59/293 (20%), Positives = 102/293 (34%), Gaps = 49/293 (16%)

Query: 105 YLRVLRVEGAAIRELPESIGKSTLLSELELKNC----------SELKLKSLRRIKMSKCS 154
           +L+      + + E+P         +E                 E +  ++ R++     
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 155 NLKRFPKIASCNKVGITGIKRLSSTLRLKNCS--SLESLPSSLCMLKSLRFLETIACKKL 212
                      N +G++ +  L   L     S  SL  LP     LKSL        K L
Sbjct: 72  QAHEL----ELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDN-NNLKAL 126

Query: 213 ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKC 272
             LP  L  L +         +  E LP  L     L  + + +  + K+LP+   +L+ 
Sbjct: 127 SDLPPLLEYLGV-------SNNQLEKLP-ELQNSSFLKIIDVDNNSL-KKLPDLPPSLE- 176

Query: 273 LAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRI 332
              +      + E+PE L  L  L  +   NN+LK+ P+      SL+ +    N  + +
Sbjct: 177 --FIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEEL 230

Query: 333 PE---------------YLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI 370
           PE                L++ P   PS L +LN+  +    L      L+ +
Sbjct: 231 PELQNLPFLTTIYADNNLLKTLPDLPPS-LEALNVRDNYLTDLPELPQSLTFL 282

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 43/362 (11%), Positives = 109/362 (30%), Gaps = 43/362 (11%)

Query: 23  GLRLKNCSSLESFPSSLCVLKSLRSLQI----IDCKKFERLLDELGNLETLLVLRVEGAA 78
           GL L+   +    P ++  L  L  L +        +       +    +          
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK------ 138

Query: 79  IRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCS 138
             +  +   Q   +     ++ S+     +        + + +S   +   +++      
Sbjct: 139 --QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ--QKSIKKSSRITLKDTQIGQ---L 191

Query: 139 ELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCML 198
              +  + +  + + + L++F      +      I         +     ++       L
Sbjct: 192 SNNITFVSK-AVMRLTKLRQF--YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 199 KSLRFLETIACKKLERLPESLGQLALLCEL--------KMIKCSSFESLPSSLCMLKSLT 250
           K L  +E   C  L +LP  L  L  +  +           +        +   + + + 
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 251 PLAIIDCKIFK-RLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRT 309
            + I    +    +   L  +K L  L      +     + G    LA L L+ N +   
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI 368

Query: 310 PESLYQ-LSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLS 368
           P +       ++ L  F +N       L      IP+   + ++S    ++++   N++ 
Sbjct: 369 PANFCGFTEQVENLS-FAHNK------L----KYIPNIFDAKSVS--VMSAIDFSYNEIG 415

Query: 369 EI 370
            +
Sbjct: 416 SV 417

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 56/392 (14%), Positives = 124/392 (31%), Gaps = 62/392 (15%)

Query: 24  LRLKNCSSLESFPSSL-----CVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAA 78
              K    +    + +          L    I    + + +            +      
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 79  IRELSQSLGQLALLSEL-------------ELKNSSEFEYLRVLRVEGAAIRELPESIGK 125
           I  +S+++ +L  L +              E   +   EY +  +               
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-------EDLKWDN 247

Query: 126 STLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS 177
              L+++E+ NC  L         L  ++ I ++    +           +    +    
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 178 STLRLKNCSSLESL--PSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCS- 234
             + +   + L++    +SL  +K L  LE     +LE    + G    L  L +   + 
Sbjct: 308 QIIYIGYNN-LKTFPVETSLQKMKKLGMLE-CLYNQLEGKLPAFGSEIKLASLNL---AY 362

Query: 235 -SFESLPSSLC-MLKSLTPLAIIDCKIFKRLPN--ELGNLKCLAALI--------VKGTA 282
                +P++ C   + +  L+    K+ K +PN  +  ++  ++A+         V G  
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 283 IREVPESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPT 341
              +  +     +++ + LSNN + + P E     S L  +    N    IP+       
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 342 SIPSELRSLNLSVDSGNSLNLDLNKLSEIVKE 373
                   L        S++L  NKL+++  +
Sbjct: 482 ENFKNTYLLT-------SIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 48/426 (11%), Positives = 120/426 (28%), Gaps = 108/426 (25%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
              +     ++       LK L  +++ +C    +L   L  L  + ++ V         
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 84  QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIREL--PESIGKSTLLSELELKNCS--- 138
           Q       L++  +        ++++ +    ++      S+ K   L  LE        
Sbjct: 290 QLKDDWQALADAPVGEK-----IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344

Query: 139 ---EL-KLKSLRRIKMS-------------KCSNLKRFPKIASCNKVGITGIKRLSSTLR 181
                     L  + ++                 ++      + NK     +K + +   
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL--SFAHNK-----LKYIPNIFD 397

Query: 182 LKNCSSLESL------------------PSSLCMLKSLRFLETIACKKLERLP-ESLGQL 222
            K+ S + ++                    +     ++  +  ++  ++ + P E     
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN-LSNNQISKFPKELFSTG 456

Query: 223 ALLCELKM-------IKCSSFESLPSSLCMLKSLT------------PLAIIDCKI---- 259
           + L  + +       I  +S +    +      LT                    +    
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 260 --------FKRLPNELGNLKCLAALIVKGTAI-------REVPESLGYLSSLAKLELSNN 304
                   F + P +  N   L    ++           RE PE +    SL +L++ +N
Sbjct: 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 305 NLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL 364
           ++++  E +    ++  L   ++N         S   S         +         L  
Sbjct: 577 DIRKVNEKI--TPNISVLD-IKDNP------NISIDLSYVCPYIEAGM-------YMLFY 620

Query: 365 NKLSEI 370
           +K  +I
Sbjct: 621 DKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 50/328 (15%), Positives = 96/328 (29%), Gaps = 47/328 (14%)

Query: 60  LDELGNLETLLVLRVEGAAIR-ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRE 118
           L+  G +  L    +EG      +  ++GQL  L  L L +  E         +      
Sbjct: 77  LNSNGRVTGL---SLEGFGASGRVPDAIGQLTELEVLALGSHGE---------KVNERLF 124

Query: 119 LPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS 178
            P+ I  +    + +       +   +        S+L +    +   +  I    R++ 
Sbjct: 125 GPKGISANMSDEQKQKMRMH-YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

Query: 179 TLRLKNCSS--LESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSF 236
                   S  +  +  ++  L  LR         +        +              +
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA-----QQY 238

Query: 237 ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-------- 288
           ++       LK LT + + +C    +LP  L  L  +  + V         +        
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 289 -SLGYLSSLAKLELSNNNLKR--TPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPS 345
                   +  + +  NNLK      SL ++  L  L+   N        L     +   
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-------LEGKLPAF-G 350

Query: 346 ELRSLNLSVDSGNSLNLDLNKLSEIVKE 373
               L        SLNL  N+++EI   
Sbjct: 351 SEIKL-------ASLNLAYNQITEIPAN 371

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 8e-14
 Identities = 50/321 (15%), Positives = 88/321 (27%), Gaps = 59/321 (18%)

Query: 62  ELGNLETLLVLRVEGAAIRELSQSLGQLALLSE-----LELKNSSEFEYLRVLRVEGAAI 116
            L        +    A          + AL  E     + L           L++    +
Sbjct: 12  SLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL 71

Query: 117 RELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRL 176
             LP+++     ++ LE+                     L   P+              L
Sbjct: 72  SSLPDNLPPQ--ITVLEITQN-----------------ALISLPE----------LPASL 102

Query: 177 SSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSS- 235
              L   +   L +LP     LK L     +   +L  LPE    L      + I   + 
Sbjct: 103 E-YLDACDNR-LSTLPELPASLKHLD----VDNNQLTMLPELPALL------EYINADNN 150

Query: 236 -FESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLS 294
               LP     L+ L+   + + ++   LP    +L+   AL V    +  +P       
Sbjct: 151 QLTMLPELPTSLEVLS---VRNNQL-TFLPELPESLE---ALDVSTNLLESLPAVPVRNH 203

Query: 295 SLAK----LELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSL 350
              +         N +   PE++  L     +   +N          S  T+ P      
Sbjct: 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 351 NLSVDSGNSLNLDLNKLSEIV 371
                S    N     L++ V
Sbjct: 264 IYFSMSDGQQNTLHRPLADAV 284

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 77/361 (21%), Positives = 127/361 (35%), Gaps = 55/361 (15%)

Query: 23  GLRLKNCS---SLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAI 79
            + L +        +  SSL  L  L SL + +       +       +L  L +   ++
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSRNSL 112

Query: 80  REL---SQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKN 136
                   SLG  + L  L + +++       L   G           K   L  L+L  
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNT-------LDFPGK-----VSGGLKLNSLEVLDLSA 160

Query: 137 CSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESL----- 191
            S      +  +    C  LK    I+            +S  + +  C +LE L     
Sbjct: 161 NSISGANVVGWVLSDGCGELKHL-AISGNK---------ISGDVDVSRCVNLEFLDVSSN 210

Query: 192 -----PSSLCMLKSLRFLETIACKKLE-RLPESLGQLALLCELKMIKCSSFESLPSSLCM 245
                   L    +L+ L+ I+  KL      ++     L  L +        +P     
Sbjct: 211 NFSTGIPFLGDCSALQHLD-ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-- 267

Query: 246 LKSLTPLAIIDCKIFKRLPNEL-GNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSN 303
           LKSL  L++ + K    +P+ L G    L  L + G      VP   G  S L  L LS+
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 304 NNLKRT--PESLYQLSSLKYLKPFENN-SDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL 360
           NN       ++L ++  LK L    N  S  +PE L    T++ + L +L+L   S N+ 
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL----TNLSASLLTLDL---SSNNF 380

Query: 361 N 361
           +
Sbjct: 381 S 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 60/344 (17%), Positives = 111/344 (32%), Gaps = 64/344 (18%)

Query: 34  SFPSSLCVLKSLRSLQIIDCKKFE-RLLDELGNLETLLVLRVEGAAIR-ELSQSLGQLAL 91
             P +L     L SL +         +   LG+L  L  L++    +  E+ Q L  +  
Sbjct: 409 KIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 92  LSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIK-- 149
           L  L L  +          + G    E+P  +   T L+ + L N          R+   
Sbjct: 468 LETLILDFN---------DLTG----EIPSGLSNCTNLNWISLSNN---------RLTGE 505

Query: 150 ----MSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLE-----------SLPSS 194
               + +  NL       S N    +G   + + L   +C SL            ++P++
Sbjct: 506 IPKWIGRLENLAIL--KLSNNS--FSG--NIPAEL--GDCRSLIWLDLNTNLFNGTIPAA 557

Query: 195 LCMLKSLRFLETIACKKLERLPESLGQLALL--CELKMIKCSSFESLPSSLCMLKSLTPL 252
           +           IA     +    +    +   C                L  L +  P 
Sbjct: 558 MFKQSGKIAANFIA----GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 253 AIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLKRT-P 310
            I              N   +  L +    +   +P+ +G +  L  L L +N++  + P
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673

Query: 311 ESLYQLSSLKYLKPFENN-SDRIPEYLRSSPTSIPSELRSLNLS 353
           + +  L  L  L    N    RIP+ +    +++   L  ++LS
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAM----SALTM-LTEIDLS 712

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 76/380 (20%), Positives = 119/380 (31%), Gaps = 68/380 (17%)

Query: 26  LKNCSSLESF------------PSSLCVLKSLRSLQIIDCK---KFERLLDELGNLETLL 70
           L +CS L+               S    L SL  L +                     L 
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 71  VLRVEGAAIRELSQSLGQLALLSELELKNSS---------EFEYLRVLRVEGAAIR-ELP 120
            L + G  I      + +   L  L++ +++         +   L+ L + G  +  +  
Sbjct: 182 HLAISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240

Query: 121 ESIGKSTLLSELELKNCSELKLKSLR-RIKMSKCSNLKRFPKIASCNKVGITGIKRLSST 179
            +I   T L  L + +            I      +L+      + NK   TG   +   
Sbjct: 241 RAISTCTELKLLNISSNQ------FVGPIPPLPLKSLQYL--SLAENK--FTG--EIPDF 288

Query: 180 LRLKNCSSLESL-----------PSSLCMLKSLRFLETIACKKLE-RLP-ESLGQLALLC 226
           L    C +L  L           P        L  L  ++       LP ++L ++  L 
Sbjct: 289 L-SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA-LSSNNFSGELPMDTLLKMRGLK 346

Query: 227 ELKMIKCSSFESLPSSLC-MLKSLTPLAIIDCKIFKRLPNELGN--LKCLAALIVKGTAI 283
            L +        LP SL  +  SL  L +        +   L       L  L ++    
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 284 R-EVPESLGYLSSLAKLELSNNNLK-RTPESLYQLSSLKYLKPFENN-SDRIPEYLRSSP 340
             ++P +L   S L  L LS N L    P SL  LS L+ LK + N     IP+ L    
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466

Query: 341 TSIPSELRSLNLSVDSGNSL 360
                 L +L L     N L
Sbjct: 467 -----TLETLIL---DFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 69/332 (20%), Positives = 115/332 (34%), Gaps = 80/332 (24%)

Query: 26  LKNCSSLE-----------SFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRV 74
           L NCS L            + PSSL  L  LR L++        +  EL  ++TL  L +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473

Query: 75  EGAAIR-ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELE 133
           +   +  E+   L     L+ + L N+         R+ G    E+P+ IG+   L+ L+
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNN---------RLTG----EIPKWIGRLENLAILK 520

Query: 134 LKNC-------SEL-KLKSLRRIKMS-------------KCSNLKRFPKIASCNKVGITG 172
           L N        +EL   +SL  + ++             K S       IA    V I  
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580

Query: 173 IKRLSSTLRLKNCSSLE-SLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMI 231
                      N    +      L  L +       +         +      +  L M 
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM- 639

Query: 232 KCSS--FE-SLPSSLCMLKSLTPL---------AIIDCKIFKRLPNELGNLKCLAALIV- 278
             S       +P  +  +  L  L         +I         P+E+G+L+ L  L + 
Sbjct: 640 --SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI---------PDEVGDLRGLNILDLS 688

Query: 279 ----KGTAIREVPESLGYLSSLAKLELSNNNL 306
                G     +P+++  L+ L +++LSNNNL
Sbjct: 689 SNKLDG----RIPQAMSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 43/218 (19%), Positives = 68/218 (31%), Gaps = 44/218 (20%)

Query: 178 STLRLKNCS---SLESLPSSLCMLKSLRFL------------ETIACKKLERL------- 215
           +++ L +        ++ SSL  L  L  L                   L  L       
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112

Query: 216 ------PESLGQLALLCELKMIKCS-SFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL- 267
                   SLG  + L  L +   +  F    S    L SL  L +    I         
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 268 --GNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP 324
                  L  L + G  I  +V   +    +L  L++S+NN       L   S+L++L  
Sbjct: 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI 230

Query: 325 FENN-SDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLN 361
             N  S      + +      +EL+ LN+   S N   
Sbjct: 231 SGNKLSGDFSRAISTC-----TELKLLNI---SSNQFV 260

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 38/149 (25%), Positives = 55/149 (36%), Gaps = 23/149 (15%)

Query: 238 SLPSSLCMLKSLTPLAIIDCKIFK-RLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSS 295
            +PSSL  L  L  L I         +P  +  L  L  L +  T +   +P+ L  + +
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126

Query: 296 LAKLELSNNNLKRT-PESLYQLSSLKYLKPFENN-SDRIPE---YLRSSPT--------- 341
           L  L+ S N L  T P S+  L +L  +    N  S  IP+         T         
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 342 --SIPSELRSLNLSVDSGNSLNLDLNKLS 368
              IP    +LNL       ++L  N L 
Sbjct: 187 TGKIPPTFANLNL-----AFVDLSRNMLE 210

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 49/272 (18%), Positives = 87/272 (31%), Gaps = 61/272 (22%)

Query: 61  DELGNLETLLVLRVEGAAIR---ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR 117
           D       +  L + G  +     +  SL  L  L+ L +   +           G    
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV--------G---- 91

Query: 118 ELPESIGKSTLLSELELKNC-------SEL-KLKSLRRIKMS-------------KCSNL 156
            +P +I K T L  L + +          L ++K+L  +  S                NL
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 157 KRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLE-RL 215
                    N+  I+G                 ++P S      L    TI+  +L  ++
Sbjct: 152 VGI--TFDGNR--ISG-----------------AIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA 275
           P +   L L   + + +              K+   + +    +   L  ++G  K L  
Sbjct: 191 PPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 276 LIVKGTAIR-EVPESLGYLSSLAKLELSNNNL 306
           L ++   I   +P+ L  L  L  L +S NNL
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 59/351 (16%), Positives = 123/351 (35%), Gaps = 38/351 (10%)

Query: 42  LKSLRSLQIIDCKKFERLLDE-LGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKN 99
           L +L++L+I + + F  +       L +L  L ++  ++R    QSL  +  +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 100 S----------SEFEYLRVLRVEGAAIRELPESI-GKSTLLSELELKNCSELKLKSLRRI 148
           S               +R L +    +     S      + S ++        L      
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 149 KMSKCSNLKRFPKIASCNKVGITGIKRLSSTL--RLKNCSSLESLPSSLCMLKSLRFLET 206
           ++ K             +   + G+   + +    +     +E++        ++R L  
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV--------TIRRLHI 293

Query: 207 IACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCM-LKSLTPLAIIDCKI---FKR 262
                   L      L  +  + +   S    +P S    LKSL  L + +  +   + +
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 263 LPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLE---LSNNNLKRTPESLYQLSSL 319
                G    L  L++    +R + ++   L +L  L    +S N     P+S      +
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412

Query: 320 KYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI 370
           ++L    +        +R   T IP  L  L++S ++ +S +L L +L E+
Sbjct: 413 RFLN-LSSTG------IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 50/316 (15%), Positives = 111/316 (35%), Gaps = 29/316 (9%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83
           L L++ +      S L V +    ++ +  +      +    L  LL   +E + +    
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 84  QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRE------LPESIGKSTLLSELELKNC 137
            +L  L   +  E    SE   +  + +    I +      L         +  + ++N 
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 138 SELKLKSLRRIKMSKCSNLK-------RFPKIASCNKVGITGIKRLSSTLRLKNC--SSL 188
              K+  +         +L+          +    N         L  TL L      S+
Sbjct: 321 ---KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ-TLVLSQNHLRSM 376

Query: 189 ESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKS 248
           +     L  LK+L  L+ I+      +P+S      +  L  +  +    + +  C+ ++
Sbjct: 377 QKTGEILLTLKNLTSLD-ISRNTFHPMPDSCQWPEKMRFLN-LSSTGIRVVKT--CIPQT 432

Query: 249 LTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKR 308
           L  L + +  +       L  L+    L +    ++ +P++      L  +++S N LK 
Sbjct: 433 LEVLDVSNNNL-DSFSLFLPRLQ---ELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKS 487

Query: 309 TPESLYQ-LSSLKYLK 323
            P+ ++  L+SL+ + 
Sbjct: 488 VPDGIFDRLTSLQKIW 503

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 65/354 (18%), Positives = 123/354 (34%), Gaps = 50/354 (14%)

Query: 37  SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96
           S +  L  L SLQ +        L  L NL TL  L +    + ++S  L +L  L  L 
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLI 205

Query: 97  LKN--------SSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRI 148
             N              L  L + G  ++++  ++   T L++L+L N    ++ +L   
Sbjct: 206 ATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN---QISNL--A 259

Query: 149 KMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIA 208
            +S  + L         N+  I+ I  L+        ++L +L  +   L+ +  +    
Sbjct: 260 PLSGLTKLTEL--KLGANQ--ISNISPLA------GLTALTNLELNENQLEDISPISN-- 307

Query: 209 CKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELG 268
            K L  L  +L        +  I         S +  L  L  L   + K+     + L 
Sbjct: 308 LKNLTYL--TLYF----NNISDI---------SPVSSLTKLQRLFFYNNKV--SDVSSLA 350

Query: 269 NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENN 328
           NL  +  L      I ++   L  L+ + +L L++      P +     S+         
Sbjct: 351 NLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 329 SDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHG 382
           +   P  +    +         +++ +  +  N      S+ V  G    +F G
Sbjct: 410 ALIAPATISDGGS-----YTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSG 458

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 24/220 (10%)

Query: 162 IASCNKVG-ITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLG 220
           I     +  I     L+  ++     +  +   S   L  +  L+      ++ + + + 
Sbjct: 8   ITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQ-ADRLGIKSI-DGVE 65

Query: 221 QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG 280
            L  L ++          +   L  L  L  + + + +I   +   L NL  L  L +  
Sbjct: 66  YLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFN 121

Query: 281 TAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYL---------KPFENNSDR 331
             I ++   L  L++L +LELS+N +     +L  L+SL+ L         KP  N +  
Sbjct: 122 NQITDID-PLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTL 179

Query: 332 IPEYLRSSPTSIPSELRSL-NLSVDSGNSLNLDLNKLSEI 370
               + S+  S  S L  L NL      SL    N++S+I
Sbjct: 180 ERLDISSNKVSDISVLAKLTNL-----ESLIATNNQISDI 214

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 58/351 (16%), Positives = 112/351 (31%), Gaps = 45/351 (12%)

Query: 9   NIDGSTGIERPC-SCGLRLKNCSSLESFPSSLCVLKSLRSLQIID-----CK-----KFE 57
             D S+ I+    S    L+     + + + L VL ++++ +  +     CK     +F+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 58  RLLDELGNLETLLVLRVEGAAIRELSQSLGQLAL---LSELELKNSSEFEYLRVLRVEGA 114
           ++ D L    T  +     +      +    L         +L         R L +   
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 115 AIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKC-SNLKRFPKIASCNKVGITGI 173
           +IR+   +      ++  +L    E  L  L   +  K    L  FP         I   
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-----SAHIP-T 389

Query: 174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCEL----- 228
             LS    +        +   +  L     +E    +    +P S+  L L  +L     
Sbjct: 390 ILLS---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SI-YLELKVKLENEYA 444

Query: 229 ---KMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE 285
               ++      ++P +      L P   +D   +  + + L N         + T  R 
Sbjct: 445 LHRSIVDHY---NIPKTFD-SDDLIPPY-LDQYFYSHIGHHLKN----IEHPERMTLFRM 495

Query: 286 VPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYL 336
           V     +L    K+   +     +   L  L  LK+ KP+  ++D   E L
Sbjct: 496 VFLDFRFLE--QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 82/499 (16%), Positives = 160/499 (32%), Gaps = 171/499 (34%)

Query: 28  NCSSLESFPSSLCVLKSLRSLQIIDCKKFE----RLLDELGNLETLLVLR-VEGA----- 77
           +C  ++  P S  +L       II  K       RL   L + +  +V + VE       
Sbjct: 34  DCKDVQDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 78  -----AIRELSQ--SLGQLALLSELE-LKNSSE-FEYLRVLRVEG-----AAIREL-PES 122
                 I+   +  S+     + + + L N ++ F    V R++       A+ EL P  
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 123 ---------IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFP------KIASCNK 167
                     GK+ +  ++    C   K++              +         + +CN 
Sbjct: 152 NVLIDGVLGSGKTWVALDV----CLSYKVQ-------------CKMDFKIFWLNLKNCNS 194

Query: 168 VG--ITGIKRLSSTLRLKNCSSLE---SLPSSLCMLKS--LRFLETIACKKLERLPESLG 220
               +  +++L   +     S  +   ++   +  +++   R L      K +     L 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL------KSKPYENCL- 247

Query: 221 QLAL--LCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIV 278
            L L  +   K     +F                  + CKI                L+ 
Sbjct: 248 -LVLLNVQNAKAWN--AFN-----------------LSCKI----------------LLT 271

Query: 279 KGTAIREVPESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLR 337
             T  ++V + L   ++   + L ++++  TP E    L                  YL 
Sbjct: 272 --TRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLK----------------YLD 312

Query: 338 SSPTSIPSELRSLN---LSV------D----SGNSLNLDLNKLSEIVKEGWMKQSFHGQS 384
             P  +P E+ + N   LS+      D      N  +++ +KL+ I     ++ S +   
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IESSLNVLE 367

Query: 385 W--IKSMY-----FPGN-EIPK------WFRHQTFPVSD----CFRHESVEDDWK---CN 423
               + M+     FP +  IP       WF      V        ++  VE   K    +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 424 MLNVTCDGKFKSEG-YPVH 441
           + ++  + K K E  Y +H
Sbjct: 428 IPSIYLELKVKLENEYALH 446

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 45/265 (16%), Positives = 94/265 (35%), Gaps = 42/265 (15%)

Query: 119 LPESIGKSTLLSELE-LKNCSELKLKSLRRIKMSKCSNLKRFPKI----ASCNKVGITGI 173
           + E+I  ST + ++      +E    +L++  ++          I    A+ +      I
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD-----I 55

Query: 174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKC 233
           K +     ++   ++  L  +   L  ++ L     K L  L   L +     ++K +  
Sbjct: 56  KSVQG---IQYLPNVTKLFLNGNKLTDIKPLTN--LKNLGWL--FLDE----NKIKDL-- 102

Query: 234 SSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYL 293
                  SSL  LK L  L++    I   +   L +L  L +L +    I ++   L  L
Sbjct: 103 -------SSLKDLKKLKSLSLEHNGI-SDING-LVHLPQLESLYLGNNKITDI-TVLSRL 152

Query: 294 SSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIP--------EYLRSSPTSIPS 345
           + L  L L +N +      L  L+ L+ L   +N+   +         + L        +
Sbjct: 153 TKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 211

Query: 346 ELRSLNLSVDSGNSLNLDLNKLSEI 370
           +  +   ++   N++      L   
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSLVTP 236

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 18/233 (7%)

Query: 98  KNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELK--LKSLRRIKMSKCSN 155
           ++S+  E L    +       L   +     L ELE +N   L   +  +R +       
Sbjct: 343 RDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 402

Query: 156 LKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERL 215
                 +   + +      R +    L++   L            +R L  +A K L  L
Sbjct: 403 ET----LQYFSTLKAVDPMRAAYLDDLRSKF-LLENSVLKMEYADVRVLH-LAHKDLTVL 456

Query: 216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA 275
              L QL L+  L  +  +   +LP +L  L+ L  L   D  + + +   + NL  L  
Sbjct: 457 -CHLEQLLLVTHLD-LSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG-VANLPRLQE 512

Query: 276 LIVKGTAIREVPE--SLGYLSSLAKLELSNNNLKRTPES----LYQLSSLKYL 322
           L++    +++      L     L  L L  N+L +           L S+  +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 33/202 (16%)

Query: 174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKC 233
           +     L ++  + L+S   S   L+ L          +  L  +L  L           
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE-------- 401

Query: 234 SSFESLPSSLCMLKSLTPL-----AIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE 288
              +        LK++ P+       +  K              +  L +    +  +  
Sbjct: 402 ---KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-C 457

Query: 289 SLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELR 348
            L  L  +  L+LS+N L+  P +L  L  L+ L+  +N  + +            + L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV---------ANLP 508

Query: 349 SLNLSVDSGNSLNLDLNKLSEI 370
            L         L L  N+L + 
Sbjct: 509 RL-------QELLLCNNRLQQS 523

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 63/401 (15%), Positives = 110/401 (27%), Gaps = 59/401 (14%)

Query: 20  CSCGLRLKNCS--SLESFPSSLCVLKSLRSLQIIDCKKFERLL-DELGNLETLLVLRVEG 76
                +  NC    L   P +L    S   L+         +       L  L  L +  
Sbjct: 10  EKEVNKTYNCENLGLNEIPGTL--PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTR 66

Query: 77  AAIREL-SQSLGQLALLSELELKN-------SSEFE---YLRVLRVEGAAIRELPE-SIG 124
             I  +   +      L  L L          +       L+ L      I  +    + 
Sbjct: 67  CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 125 KSTLLSELELKNC--------SELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRL 176
               L  L L +              + L+ +       +    K        ++ +++ 
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKED------MSSLQQA 179

Query: 177 SS-TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALL----CELKMI 231
           ++ +L L     +  +          + L     + L  + + L    +        + +
Sbjct: 180 TNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 232 KCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLG 291
                           S+  + +     F    N       L  L +  T + E+P  L 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 292 YLSSLAKLELSNNNLKR-TPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSL 350
            LS+L KL LS N  +     S     SL +L    N        L +        LR L
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT---KRLELGTGCLENLENLREL 355

Query: 351 NLS------VDSGN----------SLNLDLNKLSEIVKEGW 375
           +LS       D  N          SLNL  N+   +  E +
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 60/384 (15%), Positives = 114/384 (29%), Gaps = 66/384 (17%)

Query: 31  SLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGN--LETLLVLRVEGAAIRELSQS-LG 87
            +             +SL     +    +   L N  +++L +   E     ++S +   
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 88  QLALLSELELKNS------------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELK 135
            L  +S   +                 F  L+ L +    + ELP  +   + L +L L 
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS 309

Query: 136 NC--SEL------KLKSLRRIKMSKCSNLKRFPKIA------------SCNKVGITGIKR 175
                 L         SL  + +   +                     S + +  +    
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 176 LSSTLRLKNCSSLESL-----------PSSLCMLKSLRFLETIACKKLERLPESLGQLAL 224
           L     L+N S L+SL             +      L  L+ +A  +L+    +      
Sbjct: 370 LQ----LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD-LAFTRLKVKD-AQSPFQN 423

Query: 225 LCELKMIKCSS--FESLP-SSLCMLKSLTPLAIIDCKI---FKRLPNELGNLKCLAALIV 278
           L  LK++  S    +         L +L  L +          +  N L  L  L  L++
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 279 KGTAIREVP-ESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLR 337
               +  +   +   L  +  ++LS+N L  +           YL    N+   I   L 
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLL 543

Query: 338 SSPTSIPSELRSLNLSVDSGNSLN 361
              +      R++NL     N L+
Sbjct: 544 PILSQ----QRTINL---RQNPLD 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 60/361 (16%), Positives = 116/361 (32%), Gaps = 52/361 (14%)

Query: 26  LKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS 85
           L+N + L      L   K  R+L+I +      +++ L ++              E   +
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFE----PSIMEGLCDVTID-----------EFRLT 269

Query: 86  LGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTL----LSELELKNCSELK 141
                    ++    +    +  + + G +I+ L +           +   +LK    L 
Sbjct: 270 YTNDFSDDIVKFHCLAN---VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 142 LKSLRRIKMSKCSNLKRFPKIASCNKV--------GITGIKRLS----STLRLK----NC 185
           L  L+ + ++         K  +   +         ++     S     T  L+    + 
Sbjct: 327 LPFLKSLTLTMN-KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 186 SSLESLPSSLCMLKSLRFLETIACKKLERLPE--SLGQLALLCELKMIKCSSFESLPSSL 243
           +    + ++   L+ L+ L+      L+R+ E  +   L  L  L +   ++        
Sbjct: 386 NGAIIMSANFMGLEELQHLD-FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 244 CMLKSLTPLAIIDCKIFKRLP-NELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLEL 301
             L SL  L +           N   N   L  L +    + ++       L  L  L +
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504

Query: 302 SNNNLKR-TPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL 360
           S+NNL         QL SL  L    N  +     L+  P S    L   NL   + NS+
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS----LAFFNL---TNNSV 557

Query: 361 N 361
            
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 57/350 (16%), Positives = 113/350 (32%), Gaps = 46/350 (13%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCK-KFERLLDELGNLETLLVLRVEGAAIREL 82
           L              +  L +L+ L +        +L     NL  L+ + +    I+ +
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 83  S-QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELEL------- 134
           +   L  L    ++             L +    I  + +   +   L EL L       
Sbjct: 169 TVNDLQFLRENPQV----------NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS 218

Query: 135 -------KNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS-STLRLKNCS 186
                  +N + L +  L   +     NL+ F          + G+  ++    RL   +
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI------MEGLCDVTIDEFRLTYTN 272

Query: 187 SLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCML 246
                      L ++  + ++A   ++ L   + +      L +I+C   +  P+    L
Sbjct: 273 DFSDDIVKFHCLANVSAM-SLAGVSIKYLE-DVPKHFKWQSLSIIRCQ-LKQFPTLD--L 327

Query: 247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE---SLGYLSSLAKLELSN 303
             L  L +   K    +  +   L  L+ L +   A+        S    +SL  L+LS 
Sbjct: 328 PFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 304 NNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLS 353
           N       +   L  L++L    +   R+ E    S      +L  L++S
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDIS 432

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 64/368 (17%), Positives = 128/368 (34%), Gaps = 57/368 (15%)

Query: 31  SLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQL 89
             +   S+L        + I    +      E   L    ++  + + +R+L +  L   
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 90  ALLSELELKN-------SSEFEY---LRVLRVEGAAIRELPESIGKS-TLLSELELKNC- 137
             +  L L +       +  F Y   ++ L +   AIR LP  + ++  LL+ L L+   
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 138 -SEL------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLES 190
            S L          L  + MS   NL+R                 L   L+L +   L  
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDT------FQATTSLQ-NLQLSSNR-LTH 179

Query: 191 LPSSLCMLKSLRFLETIACKKLERLPE--SLGQLALL-CELKMIKCSSFESL-------- 239
           +  SL  + SL     ++   L  L    ++ +L      + +++      L        
Sbjct: 180 VDLSL--IPSLFHAN-VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236

Query: 240 ----PSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSS 295
                + L     L  + +   ++ K + +    ++ L  L +    +  +      + +
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296

Query: 296 LAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVD 355
           L  L+LS+N+L     +  Q   L+ L   ++NS      + +   S    L++L L   
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDRLENLY-LDHNS------IVTLKLSTHHTLKNLTL--- 346

Query: 356 SGNSLNLD 363
           S N  + +
Sbjct: 347 SHNDWDCN 354

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 65/344 (18%), Positives = 117/344 (34%), Gaps = 67/344 (19%)

Query: 37  SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96
             +  L +L  L +   +  +  +  L NL  L  L +    I ++S +L  L  L EL 
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116

Query: 97  L--------KNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRI 148
           L           +    +  L +           +   T L+ L +      K+K +   
Sbjct: 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES---KVKDV--T 171

Query: 149 KMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIA 208
            ++  ++L       + N+  I  I  L+      + +SL    + +  +  +  +    
Sbjct: 172 PIANLTDLYSL--SLNYNQ--IEDISPLA------SLTSLHYFTAYVNQITDITPVAN-- 219

Query: 209 CKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELG 268
             +L  L   +G      ++  +         S L  L  LT L I   +I     N + 
Sbjct: 220 MTRLNSL--KIGN----NKITDL---------SPLANLSQLTWLEIGTNQISD--INAVK 262

Query: 269 NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFEN 327
           +L  L  L V    I ++   L  LS L  L L+NN L     E +  L++L  L     
Sbjct: 263 DLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF-LSQ 320

Query: 328 NSDRIPEYLRSSPTSIP--SELRSLNLSVDSGNSLNLDLNKLSE 369
           N   I        T I   + L  +       +S +     + +
Sbjct: 321 N--HI--------TDIRPLASLSKM-------DSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 23/201 (11%)

Query: 170 ITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELK 229
           I     L+  +R     +  +   +   L+S+  L  +A +K+  +   +  L  L  L 
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVTQEELESITKLV-VAGEKVASIQG-IEYLTNLEYLN 72

Query: 230 MIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES 289
           +        +   L  L  LT L I   KI     + L NL  L  L +    I ++   
Sbjct: 73  LNGNQ-ITDISP-LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDIS-P 127

Query: 290 LGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRS 349
           L  L+ +  L L  N+       L  ++ L YL   E+    +            + L  
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI---------ANLTD 178

Query: 350 LNLSVDSGNSLNLDLNKLSEI 370
           L        SL+L+ N++ +I
Sbjct: 179 L-------YSLSLNYNQIEDI 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 64/360 (17%), Positives = 112/360 (31%), Gaps = 59/360 (16%)

Query: 36  PSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSEL 95
             S   LK L  L + D        +    L  L  L         LS S   L  L+  
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS--------LSNSFTSLRTLTNE 373

Query: 96  ELKNSSEFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNC---------SELKLKSL 145
              + +    L +L +    I ++  ++      L  L+L                L+++
Sbjct: 374 TFVSLA-HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 146 RRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNC--SSLESLPSSLCMLKSLRF 203
             I +S         K     +     +  L   L L+     +++S PS    L++L  
Sbjct: 433 FEIYLSYN-------KYLQLTRNSFALVPSLQ-RLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 204 LETIACKKLERLPES-LGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKR 262
           L  ++   +  + +  L  L  L  L +               L  L   A         
Sbjct: 485 L-DLSNNNIANINDDMLEGLEKLEILDL-----------QHNNLARLWKHANPG-----G 527

Query: 263 LPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPES-LYQLSSLK 320
               L  L  L  L ++     E+  E    L  L  ++L  NNL   P S      SLK
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 321 YLKPFENN-SDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQS 379
            L   +N  +    +    +  +    L  L++     N  +     ++  V   W+ ++
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRN----LTELDM---RFNPFDCTCESIAWFVN--WINET 638

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 71/422 (16%), Positives = 129/422 (30%), Gaps = 72/422 (17%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKK------FERLLDELGNLETL-------- 69
           L L N   +++  S    + +  SL+ ++                +G L  L        
Sbjct: 150 LLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 70  ------LVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIREL-PES 122
                 L L +   +IR LS S  QL+  S            L +L +    +  +  +S
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN-LTMLDLSYNNLNVVGNDS 267

Query: 123 IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLK-----RFPKIASCNKVGITGIKRLS 177
                 L    L+      ++ L    +    N++     R     S +   +  I   S
Sbjct: 268 FAWLPQLEYFFLEYN---NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 178 STLRLKNCSSLESL-----------PSSLCMLKSLRFLE----TIACKKLERLPESLGQL 222
                +    LE L            +    L +L++L       + + L          
Sbjct: 325 ----FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLP-NELGNLKCLAALIVKGT 281
           + L  L + K    +    +   L  L  L +   +I + L   E   L+ +  + +   
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 282 AIREV-PESLGYLSSLAKLELSNNNLK---RTPESLYQLSSLKYLKPFENNSDRIPEYLR 337
              ++   S   + SL +L L    LK    +P     L +L  L    NN+      + 
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD-LSNNN------IA 493

Query: 338 SSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIVKE---GWMKQSFHGQSWIKSMYFPGN 394
           +    +   L  L         L+L  N L+ + K    G       G S +  +    N
Sbjct: 494 NINDDMLEGLEKL-------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 395 EI 396
             
Sbjct: 547 GF 548

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 37/201 (18%), Positives = 69/201 (34%), Gaps = 20/201 (9%)

Query: 179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERL-PESLGQLALLCELKMIKCSSFE 237
            L L +        ++      L  L+ +    + +L PE   +L +L  L +      +
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLD-VGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87

Query: 238 SLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSL 296
               +     +LT L ++   I K   N     K L  L +    +      +   L +L
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 297 AKLELSNNNLKRTPE---SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLS 353
            +L LSNN ++        ++  SSLK L+   +N       ++         +  L   
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLE-LSSNQ------IKEFSPGCFHAIGRL--- 197

Query: 354 VDSGNSLNLDLNKLSEIVKEG 374
                 L L+  +L   + E 
Sbjct: 198 ----FGLFLNNVQLGPSLTEK 214

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 72/412 (17%), Positives = 141/412 (34%), Gaps = 56/412 (13%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDE-LGNLETLLVLRVEGAAIR-- 80
           L L           +   L SL+ L  ++      L +  +G+L+TL  L V    I+  
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 81  ELSQSLGQLALLSELELKN-------SSEFEYLRVLRVEGAA-------IRELPESIGKS 126
           +L +    L  L  L+L +        ++   L  + +   +       +  +     K 
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 127 TLLSELELKNC------SELKLKSLRRIKMSKCS--NLKRFPKIASCNKVGITGIKRLS- 177
             L +L L+N        +  ++ L  +++ +      +    +   +K  + G+  L+ 
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 178 STLRL-KNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSF 236
              RL      L+ +      L ++    ++    +ER+            L+++ C  F
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSF-SLVSVTIERVK-DFSYNFGWQHLELVNCK-F 316

Query: 237 ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR---EVPESLGYL 293
              P+    LKSL  L     K          +L  L  L +    +       +S    
Sbjct: 317 GQFPT--LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 294 SSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLS 353
           +SL  L+LS N +     +   L  L++L    +N  ++      S  S+   LR+L   
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM------SEFSVFLSLRNL--- 423

Query: 354 VDSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTF 405
                 L++                 F+G S ++ +   GN   + F    F
Sbjct: 424 ----IYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIF 466

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 64/346 (18%), Positives = 117/346 (33%), Gaps = 41/346 (11%)

Query: 5   IPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCK------KFER 58
           +    I G  G+E         +N  +LE F  S   L+ L +L I + +        + 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCNLTIEEFRLAYLDYYLDD 273

Query: 59  LLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKN-------SSEFEYLRVLRV 111
           ++D    L  +    +    I  +            LEL N       + + + L+ L  
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 112 EGAAIRELPESIGKSTL---------LSELELKNCSELKLKSLRRIKMSKCSNLKRFPKI 162
                      +   +L         LS     + S+    SL+ + +S    +      
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

Query: 163 ASCNKVGITGIKRLSSTLRLKNCS-SLESLPSSLCMLKSLRFLETIACKKLERL-PESLG 220
               ++           L  ++ +    S  S    L++L +L+ I+             
Sbjct: 393 LGLEQL---------EHLDFQHSNLKQMSEFSVFLSLRNLIYLD-ISHTHTRVAFNGIFN 442

Query: 221 QLALLCELKMIKCS-SFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVK 279
            L+ L  LKM   S     LP     L++LT L +  C++ +  P    +L  L  L + 
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502

Query: 280 GTAIREV-PESLGYLSSLAKLELSNNNLKRTPESLYQ--LSSLKYL 322
                 +       L+SL  L+ S N++  + +   Q   SSL +L
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 240 PSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAK 298
             S      L  L +  C+I         +L  L+ LI+ G  I+ +   +   LSSL K
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 299 LELSNNNLKR-TPESLYQLSSLKYLKPFENN--SDRIPEYLRSSP-------------TS 342
           L     NL       +  L +LK L    N   S ++PEY  +               + 
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 343 IPSELRSLNLSVDSGNSLNLDLNKLSEI 370
             ++LR L+       SL+L LN ++ I
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 70/363 (19%), Positives = 110/363 (30%), Gaps = 48/363 (13%)

Query: 24  LRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL- 82
           L L  C        +   L  L +L +         L     L +L  L      +  L 
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 83  SQSLGQLALLSELEL--------KNSSEFE---YLRVLRVEGAAIREL-PESIGKSTLLS 130
           +  +G L  L EL +        K    F     L  L +    I+ +    +     + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 131 ELELK-----------NCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS-S 178
            L L                 K   L ++ +    +     K        + G++     
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG---LAGLEVHRLV 233

Query: 179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQL-ALLCELKMIKCSSFE 237
               +N  +LE    S   L+ L  L TI   +L  L   L  +  L   L  +   S  
Sbjct: 234 LGEFRNEGNLEKFDKSA--LEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 238 SL----PSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYL 293
           S+                L +++CK  +    +L +LK L     KG        S   L
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----AFSEVDL 346

Query: 294 SSLAKLELSNNNLKR---TPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSL 350
            SL  L+LS N L       +S +  +SLKYL    N    +             +L  L
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE-----QLEHL 401

Query: 351 NLS 353
           +  
Sbjct: 402 DFQ 404

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 32/223 (14%)

Query: 179 TLRLKNCSSLESLPSSLCMLKSLRFL------------ETIA-CKKLERL---------- 215
            L L  C        +   L  L  L               +    L++L          
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 216 -PESLGQLALLCELKMIKCS-SFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273
               +G L  L EL +         LP     L +L  L +   KI      +L  L  +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 274 AALIVK----GTAIREVPESLGYLSSLAKLELSNNNLKRT--PESLYQLSSLKYLKPFEN 327
             L +        +  +         L KL L NN          +  L+ L+  +    
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 328 NSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI 370
                    +   +++   L +L +       L+  L+ + ++
Sbjct: 236 EFRNEGNLEKFDKSALEG-LCNLTIEEFRLAYLDYYLDDIIDL 277

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 15/217 (6%)

Query: 161 KIASCNKVGITGI-KRLSSTLR---LKNCSSLESLPSSLCMLKSLRFLETIACKKLERL- 215
               C ++    I   L  + +   L           S      L+ L+   C +++ + 
Sbjct: 10  ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIE 68

Query: 216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA 275
             +   L+ L  L +           +   L SL  L  ++  +       +G+LK L  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 276 LIVKGTAIREV--PESLGYLSSLAKLELSNNNLKR-TPESLYQLSSLKYLKPFENNSD-R 331
           L V    I+    PE    L++L  L+LS+N ++      L  L  +  L    + S   
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 332 IPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLS 368
           +      +   I   L  L L     N  +L++ K  
Sbjct: 189 MNFIQPGAFKEI--RLHKLTL---RNNFDSLNVMKTC 220

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 64/373 (17%), Positives = 128/373 (34%), Gaps = 57/373 (15%)

Query: 26  LKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQ 84
                  +   S+L        + I    +      E   L    ++  + + +R+L + 
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 85  SLGQLALLSELELKN-------SSEFEY---LRVLRVEGAAIRELPESIGKS-TLLSELE 133
            L     +  L L +       +  F Y   ++ L +   AIR LP  + ++  LL+ L 
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129

Query: 134 LKNC--SEL------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNC 185
           L+    S L          L  + MS   NL+R                 L   L+L + 
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDT------FQATTSLQ-NLQLSSN 181

Query: 186 SSLESLPSSLCMLKSLRFLETIACKKLERLPE--SLGQLALL-CELKMIKCSSFESL--- 239
             L  +  SL  + SL     ++   L  L    ++ +L      + +++      L   
Sbjct: 182 R-LTHVDLSL--IPSLFHA-NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 237

Query: 240 ---------PSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL 290
                     + L     L  + +   ++ K + +    ++ L  L +    +  +    
Sbjct: 238 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG 297

Query: 291 GYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSL 350
             + +L  L+LS+N+L     +  Q   L+ L   ++NS      + +   S    L++L
Sbjct: 298 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY-LDHNS------IVTLKLSTHHTLKNL 350

Query: 351 NLSVDSGNSLNLD 363
            L   S N  + +
Sbjct: 351 TL---SHNDWDCN 360

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 39/326 (11%), Positives = 99/326 (30%), Gaps = 34/326 (10%)

Query: 61  DELGNLETLLVLRVEGAAIRELSQSLGQ-LALLSELELKN-------SSEFEY---LRVL 109
           +   N     + +V  +++++   SL Q    + EL+L         +++      L +L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 110 RVEGAAIRELPESIGKSTLLSELELKNC--SELK-LKSLRRIKMSKCSNLKRFPKIASCN 166
            +    + E  + +   + L  L+L N    EL    S+  +  +   N+ R        
Sbjct: 64  NLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN-NISRVS------ 115

Query: 167 KVGITGIKRLSSTLRLKNCSSLESLPS-SLCMLKSLRFLETIACKKLERLP--ESLGQLA 223
                   +    + L N   +  L          +++L+ +   +++ +   E      
Sbjct: 116 ----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLD-LKLNEIDTVNFAELAASSD 169

Query: 224 LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAI 283
            L  L +        +   +     L  L +   K+   +  E  +   +  + ++   +
Sbjct: 170 TLEHLNLQYNF-IYDVKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL 226

Query: 284 REVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSI 343
             + ++L +  +L   +L  N         +   + +     +    ++        T  
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 344 PSELRSLNLSVDSGNSLNLDLNKLSE 369
                      D        L  L  
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALGH 312

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 62/313 (19%), Positives = 116/313 (37%), Gaps = 26/313 (8%)

Query: 26  LKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS 85
           ++  + LE     L   ++  +L+  D    E L +       L  L      I +L   
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 86  LGQLAL-----LSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKN---- 136
           L  ++      ++   +K+ S     + L +      + P    KS  L  L   +    
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGG 338

Query: 137 --CSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSS 194
              SE+ L SL  + +S   N   F    S +  G T +K     L L     + ++ S+
Sbjct: 339 NAFSEVDLPSLEFLDLS--RNGLSFKGCCSQSDFGTTSLK----YLDLSFNG-VITMSSN 391

Query: 195 LCMLKSLRFLETIACKKLERLPES--LGQLALLCELKMIKCSSFESLPSSLCMLKSLTPL 252
              L+ L  L+      L+++ E      L  L  L +    +  +       L SL  L
Sbjct: 392 FLGLEQLEHLD-FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 253 AIIDCKIFKRLPNE-LGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTP 310
            +      +    +    L+ L  L +    + ++  +    LSSL  L +++N LK  P
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 311 ESLYQ-LSSLKYL 322
           + ++  L+SL+ +
Sbjct: 511 DGIFDRLTSLQKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 62/354 (17%), Positives = 123/354 (34%), Gaps = 53/354 (14%)

Query: 36  PSSLCVLKSLRSLQIIDCKKFERLLDE-LGNLETLLVLRVEGAAIRELS--QSLGQLALL 92
             +   L SL+ L  ++      L +  +G+L+TL  L V    I+     +    L  L
Sbjct: 93  LGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 93  SELELKN-------SSEFEYLRVLRVEGAA-------IRELPESIGKSTLLSELELKNC- 137
             L+L +        ++   L  + +   +       +  +     K   L +L L+N  
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 138 -------------SELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS-STLRLK 183
                        + L++  L   +     NL++F K A      + G+  L+    RL 
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA------LEGLCNLTIEEFRLA 265

Query: 184 NCS-SLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS 242
                L+ +      L ++    ++    +ER+ +     +     + ++  + +     
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSS-FSLVSVTIERVKD----FSYNFGWQHLELVNCKFGQFP 320

Query: 243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV---PESLGYLSSLAKL 299
              LKSL  L     K          +L  L  L +    +       +S    +SL  L
Sbjct: 321 TLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 300 ELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLS 353
           +LS N +     +   L  L++L    +N  ++ E+   S       L  L++S
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDIS 429

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 55/295 (18%), Positives = 98/295 (33%), Gaps = 48/295 (16%)

Query: 121 ESIGKSTLLSELE-LKNCSELKLKSLRRIKMSKCSNLKRFPKI----ASCNKVG-ITGIK 174
           E+I   T + ++      +E    +L++  ++          I    A+ + +  + GI+
Sbjct: 6   ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQ 65

Query: 175 -------------RLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERL------ 215
                        +L+    L N  +L  L      +K L  L+    KKL+ L      
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD--LKKLKSLSLEHNG 123

Query: 216 ---PESLGQLALLCELKMIKC--SSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNL 270
                 L  L  L  L +     +    L      L  L  L++ D +I   +   L  L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSR----LTKLDTLSLEDNQI-SDIVP-LAGL 177

Query: 271 KCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD 330
             L  L +    I ++  +L  L +L  LEL +       + +   S+L      +N   
Sbjct: 178 TKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNTVKNTDG 234

Query: 331 RIPEYLRSSPTSI--PSELRSLNLSVDSGNSLNLDLNKLSEIVKEGWMKQSFHGQ 383
            +      +P  I    +    N+        N       + V  G  K  FHG+
Sbjct: 235 SL-----VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 284

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 231 IKCS--SFESLPSSLCMLKSLTPLAIIDCKIFKRLPNE-LGNLKCLAALIVKGTAIREV- 286
           ++C+          L   ++LT L I + +  + L    L  L  L  L +  + +R V 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 287 PESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFEN 327
           P++  +   L++L LS N L+       Q  SL+ L    N
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 64/339 (18%), Positives = 116/339 (34%), Gaps = 58/339 (17%)

Query: 20  CSCGLRLKNCS--SLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGA 77
           CS   R   C      + P  +      R L +   +      DE  +   L  L +   
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 78  AIREL-SQSLGQLALLSELELKN-------SSEFEY---LRVLRVEGAAIRELPESIGKS 126
            +  +   +   L  L  L L++          F     L  L +    I  L + + + 
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 127 -TLLSELELKNC--SELK------LKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS 177
              L  LE+ +     +       L SL ++ + KC NL   P  A      ++ +  L 
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEA------LSHLHGLI 179

Query: 178 STLRLKNCSSLESLPS-SLCMLKSLRFLETIACKKLERLPESLGQLALL-------CELK 229
             LRL++ + + ++   S   L  L+ LE      L+ +  +      L       C L 
Sbjct: 180 -VLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 230 MIKCSSFESLPSSLCMLKSLT----PLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE 285
            +   +   L      L+ L     P++ I+  +   L         L  + + G  +  
Sbjct: 238 AVPYLAVRHLVY----LRFLNLSYNPISTIEGSMLHELLR-------LQEIQLVGGQLAV 286

Query: 286 VPE-SLGYLSSLAKLELSNNNLKRTPESLYQ-LSSLKYL 322
           V   +   L+ L  L +S N L    ES++  + +L+ L
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 29/189 (15%)

Query: 226 CELKMIKCS--SFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAI 283
            + + + C    F ++P  +        L +   +I     +E  +   L  L +    +
Sbjct: 11  AQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 284 REVPE-SLGYLSSLAKLELSNNNLKRTPESLYQ-LSSLKYLKPFENNSDRIPEYLRSSPT 341
             V   +   L +L  L L +N LK  P  ++  LS+L  L   EN    + +Y+     
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 342 SIPSELRSLNLS------VDSG--------NSLNLDLNKLSEIVKEGWMKQSFHGQSWIK 387
           +    L+SL +       +             L L+   L+ I       ++      + 
Sbjct: 129 N----LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-----PTEALSHLHGLI 179

Query: 388 SMYFPGNEI 396
            +      I
Sbjct: 180 VLRLRHLNI 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 53/282 (18%), Positives = 99/282 (35%), Gaps = 47/282 (16%)

Query: 121 ESIGKSTLLSELE-LKNCSELKLKSLRRIKMSKCSNLKRFPKI----ASCNKVGITGIKR 175
           ESI + T ++++      +    ++L +  ++   + K    +       +      I+ 
Sbjct: 1   ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN-----IQS 55

Query: 176 LSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSS 235
           L+    ++  ++L+ L  S   +  L  L+     KLE L  S+ +   L  L  I  + 
Sbjct: 56  LAG---MQFFTNLKELHLSHNQISDLSPLKD--LTKLEEL--SVNR-NRLKNLNGIPSAC 107

Query: 236 FESL---------PSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV 286
              L           SL  LK+L  L+I + K+ K +   LG L  L  L + G  I   
Sbjct: 108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL-KSIVM-LGFLSKLEVLDLHGNEITNT 165

Query: 287 PESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSI--P 344
              L  L  +  ++L+       P  +     L      ++   R       SP  I   
Sbjct: 166 -GGLTRLKKVNWIDLTGQKCVNEP--VKYQPELYITNTVKDPDGRW-----ISPYYISNG 217

Query: 345 SELRSLNLSVDSGNSLNLDLNKLS----EIVKEGWMKQSFHG 382
                  +       L +  +++S    E +  G  +  F G
Sbjct: 218 GSYVDGCVL----WELPVYTDEVSYKFSEYINVGETEAIFDG 255

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 241 SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKL 299
           + +  L +L  L I+   +       L  L  L  L +  +A  +     +  L  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 300 ELSNNNLKRTPESLYQLSSLKYL 322
           +LS N        L  L  LK L
Sbjct: 142 DLSYNGAITDIMPLKTLPELKSL 164

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 49/287 (17%), Positives = 96/287 (33%), Gaps = 32/287 (11%)

Query: 79  IRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCS 138
           +R L  S G +  L+    +     + L+VL +    I ++ +       L  L++ N S
Sbjct: 268 VRHLDLSHGFVFSLNSRVFET---LKDLKVLNLAYNKINKIADEAFYG--LDNLQVLNLS 322

Query: 139 ELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCML 198
              L  L          +     +   +      I  +      K    L++L      L
Sbjct: 323 YNLLGELYSSNFYGLPKVAYI-DLQKNH------IAIIQDQT-FKFLEKLQTLDLRDNAL 374

Query: 199 KSLRFLETIACKKLERLP-ESLGQLALLCELKMIKCSSFESLPSSLCM--LKSLTPLAII 255
            ++ F+ +I    L      +L ++ L   L  +  +  E+L     +  +  L  L + 
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 256 DCKIFKRLPNE--LGNLKCLAALIVKGTAIREVPES------LGYLSSLAKLELSNNNLK 307
             +       +        L  L +    ++   E+         LS L  L L++N L 
Sbjct: 435 QNRF-SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 308 R-TPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLS 353
              P     L++L+ L    N    +          +P+ L  L++S
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLS------HNDLPANLEILDIS 534

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 50/247 (20%), Positives = 89/247 (36%), Gaps = 12/247 (4%)

Query: 161 KIASCNKVGITGI-KRLSST--LRLKNCSSLESLP-SSLCMLKSLRFLETIACKKLERL- 215
           +IA      +T + + L++T  L L     + ++  SS   L+ L+ LE  +      + 
Sbjct: 7   RIAFYRFCNLTQVPQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRL--PNELGNLKCL 273
            E+   L  L  L +     +   P +   L  L  L +  C +   +       NLK L
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 274 AALIVKGTAIREVPE--SLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDR 331
             L +    IR +    S G L+SL  ++ S+N +    E   +    K L  F   ++ 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 332 IPEYLRSSPTSIPSELRSLNLSV--DSGNSLNLDLNKLSEIVKEGWMKQSFHGQSWIKSM 389
           +   +        +  R++ L +   SGN   +D+              S      I   
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 390 YFPGNEI 396
            F  + I
Sbjct: 246 GFGFHNI 252

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 29/159 (18%)

Query: 179 TLRLKNCSSLESLPSSL-CMLKSLRFLETIACKKLERLPE----SLGQLALL----CELK 229
            L L+N   +ES+PS     + SLR L+    K+L  + E     L  L  L    C L+
Sbjct: 140 ELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

Query: 230 MIKCSSFESLPSSLCMLKSLT----PLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE 285
            I   +   L      L  L      L+ I    F+ L +       L  L +  + I+ 
Sbjct: 199 EI--PNLTPLIK----LDELDLSGNHLSAIRPGSFQGLMH-------LQKLWMIQSQIQV 245

Query: 286 VPE-SLGYLSSLAKLELSNNNLKRTPESLYQ-LSSLKYL 322
           +   +   L SL ++ L++NNL   P  L+  L  L+ +
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 41/189 (21%), Positives = 67/189 (35%), Gaps = 32/189 (16%)

Query: 227 ELKMIKCSS--FESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR 284
           +   + C       +P  +    +   L + + +I     N   +L+ L  L +    IR
Sbjct: 44  QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 285 EVPE-SLGYLSSLAKLELSNNNLKR-TPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTS 342
            +   +   L++L  LEL +N L      +   LS LK L    N  + IP     +   
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS---YAFNR 158

Query: 343 IPSELRSLNLS-------VDSG--------NSLNLDLNKLSEIVKEGWMKQSFHGQSWIK 387
           IPS LR L+L        +  G          LNL +  L EI        +      + 
Sbjct: 159 IPS-LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-------PNLTPLIKLD 210

Query: 388 SMYFPGNEI 396
            +   GN +
Sbjct: 211 ELDLSGNHL 219

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 37/264 (14%), Positives = 89/264 (33%), Gaps = 41/264 (15%)

Query: 78  AIRELSQSLGQLALL-------SELELKNSSEFEYLRVLRVEGAAIREL-PESIGKSTLL 129
           AI E+ Q+  +  +         +           ++ L + G  + ++    +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 130 SELELKNC--SEL----KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS--TLR 181
             L L +    E      L +LR + ++              N   +  +    S  TL 
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNN-------------NY--VQELLVGPSIETLH 105

Query: 182 LKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLP 240
             N + +  +  S    +  + +  +A  K+  L +   G  + +  L  +K +  +++ 
Sbjct: 106 AANNN-ISRVSCS--RGQGKKNIY-LANNKITMLRDLDEGCRSRVQYLD-LKLNEIDTVN 160

Query: 241 SS--LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAK 298
            +       +L  L +    I   +  ++     L  L +    +  +       + +  
Sbjct: 161 FAELAASSDTLEHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218

Query: 299 LELSNNNLKRTPESLYQLSSLKYL 322
           + L NN L    ++L    +L++ 
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHF 242

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 52/382 (13%), Positives = 104/382 (27%), Gaps = 63/382 (16%)

Query: 42  LKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS----QSLGQLAL----LS 93
           L +LR+L + +       + EL    ++  L      I  +S    Q    + L    ++
Sbjct: 79  LSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133

Query: 94  ELELKNSSEFEYLRVLRVEGAAIRELP--ESIGKSTLLSELELKNC------SELKLKSL 145
            L   +      ++ L ++   I  +   E    S  L  L L+         ++    L
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 146 RRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFL- 204
           + + +S    L                   ++  + L+N   L  +  +L   ++L    
Sbjct: 194 KTLDLSSN-KLAFMGP-------EFQSAAGVT-WISLRNNK-LVLIEKALRFSQNLEHFD 243

Query: 205 ---------------------ETIACKKLERLP---ESLGQLALLCELKMIKCSSFE-SL 239
                                +T+A + +++L    E    +  L       C       
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 240 PSSLCMLKSLT-PLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLA 297
              L  LK     L        +RL  E  N      +       R V  +      +  
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKI 363

Query: 298 KLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSG 357
            LE     L    +         + +        + +      T   S L+ L   V   
Sbjct: 364 TLEQKKKAL----DEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

Query: 358 NSLNLDLNKLSEIVKEGWMKQS 379
             + ++   +       W    
Sbjct: 420 EEMYVEQQSVQNNAIRDWDMYQ 441

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 26/202 (12%)

Query: 122 SIGKSTLLSELE-LKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTL 180
           SI + T ++ +      +     +  +  ++          I + +  G TG+  +    
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFG-TGVTTIEG-- 58

Query: 181 RLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP 240
            ++  ++L  L      +  L  L+     K+  L   L        LK +         
Sbjct: 59  -VQYLNNLIGLELKDNQITDLAPLKN--LTKITEL--ELSG----NPLKNV--------- 100

Query: 241 SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLE 300
           S++  L+S+  L +   +I       L  L  L  L +    I  +   L  L++L  L 
Sbjct: 101 SAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLS 157

Query: 301 LSNNNLKRTPESLYQLSSLKYL 322
           + N  +      L  LS L  L
Sbjct: 158 IGNAQVS-DLTPLANLSKLTTL 178

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 29/164 (17%)

Query: 179 TLRLKNCSSLESLPS-SLCMLKSLRFLETIACKKLERLPES----LGQLALL----CELK 229
            L L+N   +ES+PS +   + SL  L+    KKLE + E     L  L  L    C +K
Sbjct: 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 230 MIKCSSFESLPSSLCMLKSLT----PLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE 285
            +   +   L      L+ L         I    F  L +       L  L V  + +  
Sbjct: 210 DM--PNLTPLVG----LEELEMSGNHFPEIRPGSFHGLSS-------LKKLWVMNSQVSL 256

Query: 286 VPE-SLGYLSSLAKLELSNNNLKRTPESLYQ-LSSLKYLKPFEN 327
           +   +   L+SL +L L++NNL   P  L+  L  L  L    N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 54/327 (16%), Positives = 110/327 (33%), Gaps = 50/327 (15%)

Query: 42  LKSLRSLQIIDCKKFERL-LDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNS 100
           +     L  +DC   +++   ++     L  L      I EL   + Q  LL+ L    +
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN 201

Query: 101 SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFP 160
           +              I +L   + ++  L+ L   +CS  KL     I ++  + L  F 
Sbjct: 202 N--------------ITKLD--LNQNIQLTFL---DCSSNKLTE---IDVTPLTQLTYF- 238

Query: 161 KIASCNKVGITGIKRLSS--TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPES 218
              S N +    +  LS   TL       L  +   L     L + +   C+K++ L   
Sbjct: 239 -DCSVNPLTELDVSTLSKLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELD-- 292

Query: 219 LGQLALLCELKMIKCSS--FESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL 276
              +    +L ++ C +     L   L     L  L + + ++   L   + +   L +L
Sbjct: 293 ---VTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTEL-TELD--VSHNTKLKSL 344

Query: 277 IVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYL 336
                 I++    +G + +L     +       P+     +SL       +  D+    +
Sbjct: 345 SCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS-PDLLDQFGNPM 402

Query: 337 RSSPTSIPSELRSLNLSVDSGNSLNLD 363
                  P +    + + ++    NL 
Sbjct: 403 ----NIEPGDGGVYDQATNTITWENLS 425

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 58/357 (16%), Positives = 108/357 (30%), Gaps = 68/357 (19%)

Query: 42  LKSLRSLQIIDCKKFE-RLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNS 100
            + L +L  +DC       +  +  L  L  L      I  L   L Q   L+ L   ++
Sbjct: 38  EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN 95

Query: 101 -------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKC 153
                  +    L  L  +   + +L   + ++ LL+ L     +      L  I +S  
Sbjct: 96  KLTNLDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT------LTEIDVSHN 147

Query: 154 SNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF-----LETIA 208
           + L        C+        +  + L +   + L +L  S   +  L       L  + 
Sbjct: 148 TQLTEL----DCHL------NKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197

Query: 209 CK--KLERLPESLGQLALLCELKMIKCSS--FESLPSSLCMLKSLTPLAIIDCKIFKRLP 264
           C    + +L      L    +L  + CSS     +   +  L  LT        +   L 
Sbjct: 198 CDTNNITKLD-----LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL-TELD 249

Query: 265 NELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP 324
             +  L  L  L    T + E+   L + + L   +      K     +   + L  L  
Sbjct: 250 --VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCR-KIKELDVTHNTQLYLLDC 304

Query: 325 FENNSDRIPEYLRSSPTSIPSELRSLNLS------VDSGN-----SLNLDLNKLSEI 370
                      +     S   +L  L L+      +D  +     SL+     + + 
Sbjct: 305 QAAG-------ITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDF 354

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 237 ESLPSSLCMLK-SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLS 294
           + LP SL  L      +  +D    K L N       LA L +   +I  V   SL    
Sbjct: 188 QGLPPSLTELHLDGNKITKVDAASLKGLNN-------LAKLGLSFNSISAVDNGSLANTP 240

Query: 295 SLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIP--SELRSLNL 352
            L +L L+NN L + P  L     ++ +    NN   I       P      +    ++L
Sbjct: 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 353 S 353
            
Sbjct: 301 F 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 13/133 (9%)

Query: 238 SLPSSLCMLKSLTPLAIIDCKIFKRLPNE-LGNLKCLAALIVKGTAIREVPE-SLGYLSS 295
            +P  L   ++L  L +   KI + +  E L     L  L +    IR +   SL +L +
Sbjct: 186 GIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 296 LAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVD 355
           L +L L NN L R P  L  L  L+ +    NN  ++     +    +   ++       
Sbjct: 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV---NDFCPVGFGVKRAYY--- 296

Query: 356 SGNSLNLDLNKLS 368
             N ++L  N + 
Sbjct: 297 --NGISLFNNPVP 307

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 226 CELKMIKCSS--FESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAI 283
           C    I+C+S    S+P+ +    S T L +   K+          L  L  L +    +
Sbjct: 7   CSGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 284 REV---PESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSP 340
                  +S    +SL  L+LS N +     +   L  L++L    +N  ++ E+     
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF----- 119

Query: 341 TSIPSELRSLNLSVDSGNSLNLDLNKLSEI 370
            S+   LR+L         L++        
Sbjct: 120 -SVFLSLRNL-------IYLDISHTHTRVA 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	443
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.95
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.03
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.92
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.16

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-40  Score=351.31  Aligned_cols=395  Identities=19%  Similarity=0.184  Sum_probs=265.2

Q ss_pred             CCCCCCccCCCCCccCCCcceEEecCCCCCCc---CC-----------------------ccccCCCCCcEEeccccccc
Q 046017            3 PKIPSCNIDGSTGIERPCSCGLRLKNCSSLES---FP-----------------------SSLCVLKSLRSLQIIDCKKF   56 (443)
Q Consensus         3 ~~~~~c~~~g~~~~~~~~L~~L~ls~~~~~~~---~p-----------------------~~~~~l~~L~~L~L~~n~~~   56 (443)
                      .+.+||+|.||+|. -.+++.|+++++.+.+.   +|                       ..++.+++|++|+|++|.+.
T Consensus        35 ~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~  113 (768)
T 3rgz_A           35 SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS  113 (768)
T ss_dssp             TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEE
T ss_pred             CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCC
Confidence            36789999999996 46677777776665444   32                       34556666666666666666


Q ss_pred             ccccc--ccCCCCcccEEEeecCchh-hhhhh----------------------------hccCCCCcEEecCCC-----
Q 046017           57 ERLLD--ELGNLETLLVLRVEGAAIR-ELSQS----------------------------LGQLALLSELELKNS-----  100 (443)
Q Consensus        57 ~~~p~--~~~~l~~L~~L~l~~n~l~-~lp~~----------------------------~~~l~~L~~L~ls~~-----  100 (443)
                      +.+|.  .++++++|++|++++|.++ .+|..                            +.++++|++|++++|     
T Consensus       114 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  193 (768)
T 3rgz_A          114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD  193 (768)
T ss_dssp             EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC
T ss_pred             CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc
Confidence            55555  5555555555555555543 22222                            344455555555544     


Q ss_pred             ---CCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCCCCCCC--CCCcc
Q 046017          101 ---SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKRFPKI--ASCNK  167 (443)
Q Consensus       101 ---~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~~~~~~--~~l~~  167 (443)
                         ..+++|++|++++|.+...+..++++++|++|++++|.+.        .+++|++|++++|.....+|..  .+++.
T Consensus       194 ~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~  273 (768)
T 3rgz_A          194 VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY  273 (768)
T ss_dssp             CBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCE
T ss_pred             CCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCE
Confidence               2457777777777776554333778888888888888664        6788888888887665556554  66777


Q ss_pred             ccc--cCcc-cccccccc----------cCCCCCcccCCcccCCcccceeeccccccccccccc-ccCCCCcceeeccCc
Q 046017          168 VGI--TGIK-RLSSTLRL----------KNCSSLESLPSSLCMLKSLRFLETIACKKLERLPES-LGQLALLCELKMIKC  233 (443)
Q Consensus       168 L~l--~~l~-~l~~~l~~----------~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~-l~~l~~L~~L~ls~n  233 (443)
                      |++  +.+. .+|..+..          .+|...+.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|
T Consensus       274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            776  5554 44543321          133333467777888888888888888887777765 788888888888888


Q ss_pred             cCCCCCCchhhcCC-CCCcEecccccccccCCCCCCC--CCCCceEEecCCCCc-ccChhccCCCCCCEEEccCCCCC-C
Q 046017          234 SSFESLPSSLCMLK-SLTPLAIIDCKIFKRLPNELGN--LKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLK-R  308 (443)
Q Consensus       234 ~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~-~  308 (443)
                      .+.+.+|..+..++ +|++|++++|.+.+.+|..+..  +++|++|++++|.++ .+|..+..+++|++|++++|+++ .
T Consensus       354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  433 (768)
T 3rgz_A          354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT  433 (768)
T ss_dssp             EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred             ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence            88778888887776 7888888888877777766655  677888888888777 66777777888888888888777 5


Q ss_pred             CChhhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCcccccccccccCCCC-cccCChhhhhhHHHhcccccccc-----
Q 046017          309 TPESLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSELRSLNLSVDSGN-SLNLDLNKLSEIVKEGWMKQSFH-----  381 (443)
Q Consensus       309 lp~~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~L~~L~l~~N~l~-~l~~~~~~l~~l~~~~~~~~~~~-----  381 (443)
                      +|..+..+++|++|++++|++. .+|..+..+     ++|++|++++|.++ .+|..+.+++.+...+...+.+.     
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-----KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-----CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence            6777777888888888887774 677766654     67788888877666 45666665555544333332222     


Q ss_pred             ---cccceeEEEecCCC----CCcccccC
Q 046017          382 ---GQSWIKSMYFPGNE----IPKWFRHQ  403 (443)
Q Consensus       382 ---~~~~~~~~~l~g~~----ip~w~~~~  403 (443)
                         ....++.+.+.+|.    +|.++..-
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred             HHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence               22335666677663    46666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-40  Score=345.59  Aligned_cols=354  Identities=12%  Similarity=0.139  Sum_probs=280.5

Q ss_pred             CCCCCcc---CCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEecccccc-------------------------
Q 046017            4 KIPSCNI---DGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKK-------------------------   55 (443)
Q Consensus         4 ~~~~c~~---~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~-------------------------   55 (443)
                      ..++|.|   .||.|..-.+++.|+|+++.+.+.+|++++++++|++|+|++|.+                         
T Consensus        63 ~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~  142 (636)
T 4eco_A           63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR  142 (636)
T ss_dssp             SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH
T ss_pred             CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH
Confidence            4688999   999997668999999999999899999999999999999998843                         


Q ss_pred             ----------------------------------------------------ccccccccCCCCcccEEEeecCchhh--
Q 046017           56 ----------------------------------------------------FERLLDELGNLETLLVLRVEGAAIRE--   81 (443)
Q Consensus        56 ----------------------------------------------------~~~~p~~~~~l~~L~~L~l~~n~l~~--   81 (443)
                                                                          ...+|..++++++|++|++++|.++.  
T Consensus       143 l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~  222 (636)
T 4eco_A          143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN  222 (636)
T ss_dssp             THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGG
T ss_pred             hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccc
Confidence                                                                11388889999999999999999987  


Q ss_pred             ----------------hhhhhc--cCCCCcEEecCCCC----------CCCCccEEEEeCCC-Cc--ccCccccCC----
Q 046017           82 ----------------LSQSLG--QLALLSELELKNSS----------EFEYLRVLRVEGAA-IR--ELPESIGKS----  126 (443)
Q Consensus        82 ----------------lp~~~~--~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~-~~--~lp~~l~~l----  126 (443)
                                      +|..++  ++++|++|++++|.          ++++|++|++++|. ++  .+|..++.+    
T Consensus       223 ~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~  302 (636)
T 4eco_A          223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP  302 (636)
T ss_dssp             BSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSG
T ss_pred             ccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccc
Confidence                            999988  99999999999873          56899999999998 77  488887776    


Q ss_pred             --CCCCEEeccCCCCC---------CCCCcCEEEccCCCCCCCCCCC---CCCccccc--cCccccccccccc-------
Q 046017          127 --TLLSELELKNCSEL---------KLKSLRRIKMSKCSNLKRFPKI---ASCNKVGI--TGIKRLSSTLRLK-------  183 (443)
Q Consensus       127 --~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~~l~~~~~~---~~l~~L~l--~~l~~l~~~l~~~-------  183 (443)
                        ++|++|++++|.+.         .+++|++|++++|.....+|..   .+++.|++  +.+..+|..+...       
T Consensus       303 ~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL  382 (636)
T ss_dssp             GGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred             cCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEE
Confidence              89999999998754         5677999999986554478743   45555666  6666665433221       


Q ss_pred             --CCCCCcccCCcccCCc--ccceeeccccccccccccccc-------CCCCcceeeccCccCCCCCCch-hhcCCCCCc
Q 046017          184 --NCSSLESLPSSLCMLK--SLRFLETIACKKLERLPESLG-------QLALLCELKMIKCSSFESLPSS-LCMLKSLTP  251 (443)
Q Consensus       184 --~~~~l~~lp~~~~~l~--~L~~L~ls~n~~~~~~p~~l~-------~l~~L~~L~ls~n~~~~~~p~~-~~~l~~L~~  251 (443)
                        ..+.+..+|..+..++  +|++|++++|.+.+..|..+.       .+++|++|++++|.+. .+|.. +..+++|++
T Consensus       383 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS  461 (636)
T ss_dssp             ECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred             EccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence              2344557777776654  788888888888888877777       6778888888888776 45544 455888888


Q ss_pred             EecccccccccCCCCCCC--------CCCCceEEecCCCCcccChhcc--CCCCCCEEEccCCCCCCCChhhhCCCCCCe
Q 046017          252 LAIIDCKIFKRLPNELGN--------LKCLAALIVKGTAIREVPESLG--YLSSLAKLELSNNNLKRTPESLYQLSSLKY  321 (443)
Q Consensus       252 L~l~~n~~~~~~~~~l~~--------l~~L~~L~l~~n~l~~lp~~~~--~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~  321 (443)
                      |++++|++. .+|.....        +++|++|++++|+++.+|..+.  .+++|+.|++++|+++++|..+..+++|++
T Consensus       462 L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~  540 (636)
T 4eco_A          462 INLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG  540 (636)
T ss_dssp             EECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred             EECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence            888888886 56654332        2288888888888888888876  888888999988888888888888888888


Q ss_pred             eeCC------CCCC-CccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017          322 LKPF------ENNS-DRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL  364 (443)
Q Consensus       322 L~ls------~n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~  364 (443)
                      |+++      +|++ +.+|..+..+     ++|++|++++|.++.+|..+
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~ip~~~  585 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLC-----PSLTQLQIGSNDIRKVNEKI  585 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGC-----SSCCEEECCSSCCCBCCSCC
T ss_pred             EECCCCcccccCcccccChHHHhcC-----CCCCEEECCCCcCCccCHhH
Confidence            8884      4554 6788877765     68888899888888887764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.3e-39  Score=343.24  Aligned_cols=336  Identities=19%  Similarity=0.216  Sum_probs=204.8

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCC-CCCcEEeccccccccccccccCCCCcccEEEeecCchh-hhhhh-hccCCCCc
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVL-KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR-ELSQS-LGQLALLS   93 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~lp~~-~~~l~~L~   93 (443)
                      .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|..++.+++|++|++++|.++ .+|.. +.++++|+
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            56778888888777666777766654 77888888777777777777777777777777777776 67754 77777777


Q ss_pred             EEecCCCC----------CCC-CccEEEEeCCCCc-ccCccccC--CCCCCEEeccCCCCC--------CCCCcCEEEcc
Q 046017           94 ELELKNSS----------EFE-YLRVLRVEGAAIR-ELPESIGK--STLLSELELKNCSEL--------KLKSLRRIKMS  151 (443)
Q Consensus        94 ~L~ls~~~----------~l~-~L~~L~l~~n~~~-~lp~~l~~--l~~L~~L~l~~n~~~--------~l~~L~~L~l~  151 (443)
                      +|++++|.          .++ +|++|++++|.++ .+|..+..  +++|++|++++|.+.        .+++|++|+++
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  426 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS  426 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence            77777763          122 6777777776643 45555544  566666666666543        55666666666


Q ss_pred             CCCCCCCCCCC----CCCccccc--cCcc-cccccc---------cccCCCCCcccCCcccCCcccceeecccccccccc
Q 046017          152 KCSNLKRFPKI----ASCNKVGI--TGIK-RLSSTL---------RLKNCSSLESLPSSLCMLKSLRFLETIACKKLERL  215 (443)
Q Consensus       152 ~~~~l~~~~~~----~~l~~L~l--~~l~-~l~~~l---------~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~  215 (443)
                      +|.....+|..    .+++.|++  +.+. .+|..+         ...+|...+.+|..+..+++|++|++++|.+.+.+
T Consensus       427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence            65444444443    33444444  3332 222211         11123333355555666666666666666666666


Q ss_pred             cccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCC-----------------------------
Q 046017          216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNE-----------------------------  266 (443)
Q Consensus       216 p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------------------  266 (443)
                      |.+++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..                             
T Consensus       507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (768)
T 3rgz_A          507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE  586 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred             ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence            666666666666666666666666666666666666666666655444432                             


Q ss_pred             -----------------------------------------CCCCCCCceEEecCCCCc-ccChhccCCCCCCEEEccCC
Q 046017          267 -----------------------------------------LGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNN  304 (443)
Q Consensus       267 -----------------------------------------l~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n  304 (443)
                                                               +..+++|+.|++++|+++ .+|..++.+++|+.|++++|
T Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence                                                     222345566666666665 55666666666666666666


Q ss_pred             CCC-CCChhhhCCCCCCeeeCCCCCC-CccCcccccCCCCCcccccccccccCCC
Q 046017          305 NLK-RTPESLYQLSSLKYLKPFENNS-DRIPEYLRSSPTSIPSELRSLNLSVDSG  357 (443)
Q Consensus       305 ~l~-~lp~~l~~l~~L~~L~ls~n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l  357 (443)
                      +++ .+|..++.+++|++||+++|++ +.+|..+..+     ++|++|++++|.+
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l-----~~L~~L~ls~N~l  716 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-----TMLTEIDLSNNNL  716 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC-----CCCSEEECCSSEE
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC-----CCCCEEECcCCcc
Confidence            666 5566666666666666666666 3566655554     4566666666644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-38  Score=337.29  Aligned_cols=355  Identities=12%  Similarity=0.144  Sum_probs=261.0

Q ss_pred             CCCCCC--Ccc------------CCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEec-cccccccc--------
Q 046017            2 FPKIPS--CNI------------DGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQI-IDCKKFER--------   58 (443)
Q Consensus         2 ~~~~~~--c~~------------~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L-~~n~~~~~--------   58 (443)
                      +|..++  |+|            .|+.|..-.+++.|+|+++.+.+.+|++++++++|++|+| ++|.+.+.        
T Consensus       292 ~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~  371 (876)
T 4ecn_A          292 TINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL  371 (876)
T ss_dssp             SCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCC
T ss_pred             cccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccccccccccc
Confidence            344455  999            9999876678999999999988899999999999999999 66643322        


Q ss_pred             --------------------------------------------------------------------cccccCCCCccc
Q 046017           59 --------------------------------------------------------------------LLDELGNLETLL   70 (443)
Q Consensus        59 --------------------------------------------------------------------~p~~~~~l~~L~   70 (443)
                                                                                          +|..++++++|+
T Consensus       372 ~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~  451 (876)
T 4ecn_A          372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ  451 (876)
T ss_dssp             CSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCC
T ss_pred             ccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCC
Confidence                                                                                788899999999


Q ss_pred             EEEeecCchhh------------------hhhhhc--cCCCCcEEecCCCC----------CCCCccEEEEeCCC-Ccc-
Q 046017           71 VLRVEGAAIRE------------------LSQSLG--QLALLSELELKNSS----------EFEYLRVLRVEGAA-IRE-  118 (443)
Q Consensus        71 ~L~l~~n~l~~------------------lp~~~~--~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~-~~~-  118 (443)
                      +|++++|.++.                  +|..++  ++++|++|++++|.          ++++|+.|++++|. ++. 
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~  531 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA  531 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred             EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc
Confidence            99999999987                  898877  99999999998873          56788888888887 664 


Q ss_pred             -cCccccCC-------CCCCEEeccCCCCC---------CCCCcCEEEccCCCCCCCCCCCC---CCccccc--cCcccc
Q 046017          119 -LPESIGKS-------TLLSELELKNCSEL---------KLKSLRRIKMSKCSNLKRFPKIA---SCNKVGI--TGIKRL  176 (443)
Q Consensus       119 -lp~~l~~l-------~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~~l~~~~~~~---~l~~L~l--~~l~~l  176 (443)
                       +|..++.+       ++|++|++++|.+.         .+++|++|++++|. +..+|...   +++.|++  |.+..+
T Consensus       532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~l  610 (876)
T 4ecn_A          532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEI  610 (876)
T ss_dssp             HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCC
T ss_pred             cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccc
Confidence             77655544       48888888888654         56778888888864 44777433   4444555  555555


Q ss_pred             ccccccc---------CCCCCcccCCcccCCcc--cceeeccccccccccccc---cc--CCCCcceeeccCccCCCCCC
Q 046017          177 SSTLRLK---------NCSSLESLPSSLCMLKS--LRFLETIACKKLERLPES---LG--QLALLCELKMIKCSSFESLP  240 (443)
Q Consensus       177 ~~~l~~~---------~~~~l~~lp~~~~~l~~--L~~L~ls~n~~~~~~p~~---l~--~l~~L~~L~ls~n~~~~~~p  240 (443)
                      |..+...         ..+.+..+|..+..++.  |+.|++++|.+.+.+|..   +.  .+++|+.|++++|.+. .+|
T Consensus       611 p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp  689 (876)
T 4ecn_A          611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFP  689 (876)
T ss_dssp             CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCC
T ss_pred             hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccC
Confidence            5432211         22345567766665543  788888887776655422   22  2347888888887766 555


Q ss_pred             chh-hcCCCCCcEecccccccccCCCCCCC--------CCCCceEEecCCCCcccChhcc--CCCCCCEEEccCCCCCCC
Q 046017          241 SSL-CMLKSLTPLAIIDCKIFKRLPNELGN--------LKCLAALIVKGTAIREVPESLG--YLSSLAKLELSNNNLKRT  309 (443)
Q Consensus       241 ~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~--------l~~L~~L~l~~n~l~~lp~~~~--~l~~L~~L~ls~n~l~~l  309 (443)
                      ..+ ..+++|+.|++++|++. .+|..+..        +++|++|++++|+++.+|..+.  .+++|+.|++++|+++.+
T Consensus       690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l  768 (876)
T 4ecn_A          690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF  768 (876)
T ss_dssp             HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred             HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc
Confidence            554 36788888888888775 56654433        2378888888888888888776  788888888888888888


Q ss_pred             ChhhhCCCCCCeeeCCC------CCC-CccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017          310 PESLYQLSSLKYLKPFE------NNS-DRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL  364 (443)
Q Consensus       310 p~~l~~l~~L~~L~ls~------n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~  364 (443)
                      |..+..+++|+.|++++      |++ +.+|..+..+     ++|++|++++|.++.+|..+
T Consensus       769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-----~~L~~L~Ls~N~L~~Ip~~l  825 (876)
T 4ecn_A          769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-----PSLIQLQIGSNDIRKVDEKL  825 (876)
T ss_dssp             CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC-----SSCCEEECCSSCCCBCCSCC
T ss_pred             chhhhcCCCCCEEECCCCCCcccccccccChHHHhcC-----CCCCEEECCCCCCCccCHhh
Confidence            87888888888888866      554 6777777665     68888888888887777664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-36  Score=312.44  Aligned_cols=345  Identities=18%  Similarity=0.145  Sum_probs=269.8

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~   96 (443)
                      .+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.++.+ |..|.++++|++|+
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            46899999999997666666899999999999999988777788899999999999999999876 78899999999999


Q ss_pred             cCCCC----------CCCCccEEEEeCCCCc--ccCccccCCCCCCEEeccCCCCC-----------CC-----------
Q 046017           97 LKNSS----------EFEYLRVLRVEGAAIR--ELPESIGKSTLLSELELKNCSEL-----------KL-----------  142 (443)
Q Consensus        97 ls~~~----------~l~~L~~L~l~~n~~~--~lp~~l~~l~~L~~L~l~~n~~~-----------~l-----------  142 (443)
                      +++|.          ++++|++|++++|.++  .+|..++++++|++|++++|.+.           .+           
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            98873          5689999999999977  47888999999999999988654           11           


Q ss_pred             -------------CCcCEEEccCCCCC-----------------------------------------------------
Q 046017          143 -------------KSLRRIKMSKCSNL-----------------------------------------------------  156 (443)
Q Consensus       143 -------------~~L~~L~l~~~~~l-----------------------------------------------------  156 (443)
                                   .+|++|++++|...                                                     
T Consensus       191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  270 (606)
T 3vq2_A          191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY  270 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred             CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence                         13444444443210                                                     


Q ss_pred             ---------------------------CCCCCC---CCCccccc--cCccccccc-------cccc--------------
Q 046017          157 ---------------------------KRFPKI---ASCNKVGI--TGIKRLSST-------LRLK--------------  183 (443)
Q Consensus       157 ---------------------------~~~~~~---~~l~~L~l--~~l~~l~~~-------l~~~--------------  183 (443)
                                                 +.+|..   .+++.|++  +.++.+|..       +...              
T Consensus       271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~  350 (606)
T 3vq2_A          271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP  350 (606)
T ss_dssp             CTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred             cccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCC
Confidence                                       111111   22333333  333333310       0000              


Q ss_pred             -------CCCCCccc---CCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCC-chhhcCCCCCcE
Q 046017          184 -------NCSSLESL---PSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP-SSLCMLKSLTPL  252 (443)
Q Consensus       184 -------~~~~l~~l---p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~L  252 (443)
                             ..+.+..+   |..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|++|
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence                   11222222   5667788888888888877554 66888999999999999999888777 678899999999


Q ss_pred             ecccccccccCCCCCCCCCCCceEEecCCCCcc--cChhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCC
Q 046017          253 AIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE--VPESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       253 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l  329 (443)
                      ++++|.+.+..|..+..+++|++|++++|.++.  +|..+..+++|++|++++|+++++ |..+..+++|++|++++|++
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence            999999988889999999999999999999985  788899999999999999999966 56789999999999999999


Q ss_pred             Ccc-CcccccCCCCCcccccccccccCCCCcccCChhhhh
Q 046017          330 DRI-PEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLS  368 (443)
Q Consensus       330 ~~l-p~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~  368 (443)
                      +.+ |..+..+     ++|++|++++|.++.+|..+..+.
T Consensus       510 ~~~~~~~~~~l-----~~L~~L~l~~N~l~~~p~~~~~l~  544 (606)
T 3vq2_A          510 LFLDSSHYNQL-----YSLSTLDCSFNRIETSKGILQHFP  544 (606)
T ss_dssp             SCEEGGGTTTC-----TTCCEEECTTSCCCCEESCGGGSC
T ss_pred             CCcCHHHccCC-----CcCCEEECCCCcCcccCHhHhhhc
Confidence            766 6666655     799999999999999988866553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.9e-37  Score=316.16  Aligned_cols=317  Identities=14%  Similarity=0.154  Sum_probs=214.9

Q ss_pred             CCccccCCCCCcEEeccccccccc-----------------cccccC--CCCcccEEEeecCchh-hhhhhhccCCCCcE
Q 046017           35 FPSSLCVLKSLRSLQIIDCKKFER-----------------LLDELG--NLETLLVLRVEGAAIR-ELSQSLGQLALLSE   94 (443)
Q Consensus        35 ~p~~~~~l~~L~~L~L~~n~~~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~   94 (443)
                      +|..++++++|++|++++|.+.+.                 +|..++  ++++|++|++++|.+. .+|..+.++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            444455555555555555554443                 555555  5555555555555543 45555555555555


Q ss_pred             EecCCCCC------------------CCCccEEEEeCCCCcccCc--cccCCCCCCEEeccCCCCC-------CCCCcCE
Q 046017           95 LELKNSSE------------------FEYLRVLRVEGAAIRELPE--SIGKSTLLSELELKNCSEL-------KLKSLRR  147 (443)
Q Consensus        95 L~ls~~~~------------------l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~l~~n~~~-------~l~~L~~  147 (443)
                      |++++|..                  +++|++|++++|.++.+|.  .++++++|++|++++|.+.       .+++|++
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~  357 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS  357 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCE
Confidence            55555531                  1455555555555555555  5555555555555555433       3345555


Q ss_pred             EEccCCCCCCCCCCC----CC-Cccccc--cCcccccccccc-----------cCCCCCcccCCccc-------CCcccc
Q 046017          148 IKMSKCSNLKRFPKI----AS-CNKVGI--TGIKRLSSTLRL-----------KNCSSLESLPSSLC-------MLKSLR  202 (443)
Q Consensus       148 L~l~~~~~l~~~~~~----~~-l~~L~l--~~l~~l~~~l~~-----------~~~~~l~~lp~~~~-------~l~~L~  202 (443)
                      |++++| .++.+|..    .+ ++.|++  +.+..+|..+..           .+|...+.+|..+.       .+++|+
T Consensus       358 L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          358 LNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             EECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             EECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            555553 23344433    23 444444  444444433221           12333345566666       778999


Q ss_pred             eeecccccccccccc-cccCCCCcceeeccCccCCCCCCchhhc-C-------CCCCcEecccccccccCCCCCC--CCC
Q 046017          203 FLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLPSSLCM-L-------KSLTPLAIIDCKIFKRLPNELG--NLK  271 (443)
Q Consensus       203 ~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~p~~~~~-l-------~~L~~L~l~~n~~~~~~~~~l~--~l~  271 (443)
                      +|++++|.+. .+|. .+..+++|++|++++|.+. .+|..... .       ++|++|++++|++. .+|..+.  .++
T Consensus       437 ~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~  513 (636)
T 4eco_A          437 SINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP  513 (636)
T ss_dssp             EEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred             EEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC
Confidence            9999998877 4554 4556999999999999887 66654433 2       29999999999996 7888887  999


Q ss_pred             CCceEEecCCCCcccChhccCCCCCCEEEccC------CCCC-CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCc
Q 046017          272 CLAALIVKGTAIREVPESLGYLSSLAKLELSN------NNLK-RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIP  344 (443)
Q Consensus       272 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~------n~l~-~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp  344 (443)
                      +|++|++++|+++.+|..+..+++|+.|++++      |++. .+|..+..+++|++|++++|+++.+|..+       .
T Consensus       514 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~-------~  586 (636)
T 4eco_A          514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-------T  586 (636)
T ss_dssp             TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-------C
T ss_pred             CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH-------h
Confidence            99999999999999999999999999999954      5555 78999999999999999999999999863       2


Q ss_pred             ccccccccccCCCCcccC
Q 046017          345 SELRSLNLSVDSGNSLNL  362 (443)
Q Consensus       345 ~~L~~L~l~~N~l~~l~~  362 (443)
                      ++|++|++++|.+..++.
T Consensus       587 ~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          587 PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             TTCCEEECCSCTTCEEEC
T ss_pred             CcCCEEECcCCCCccccH
Confidence            699999999999988754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.6e-36  Score=309.00  Aligned_cols=290  Identities=18%  Similarity=0.128  Sum_probs=174.4

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~   96 (443)
                      .+++++|++++|.+.+..|.+|+++++|++|++++|.+.+..|.+|+++++|++|++++|.++.+ |..|.++++|++|+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            35788999999886666677888899999999998888777788888899999999998888754 67888888999998


Q ss_pred             cCCCC----------CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC--------CCCCcC--EEEccCCCC
Q 046017           97 LKNSS----------EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL--------KLKSLR--RIKMSKCSN  155 (443)
Q Consensus        97 ls~~~----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~--------~l~~L~--~L~l~~~~~  155 (443)
                      +++|.          .+++|++|++++|.++.++ ..+..+++|++|++++|.+.        .+++|+  +|++++|..
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            88763          5678888888888877652 23445888888888888665        566666  677777543


Q ss_pred             CCCCCCC---C----------------------------------------------------CCccccc--cCcccccc
Q 046017          156 LKRFPKI---A----------------------------------------------------SCNKVGI--TGIKRLSS  178 (443)
Q Consensus       156 l~~~~~~---~----------------------------------------------------~l~~L~l--~~l~~l~~  178 (443)
                      ....|..   .                                                    +++.+++  +.+..++.
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            3222211   0                                                    1111222  22222221


Q ss_pred             c-cccc--------CCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc-hhhcCCC
Q 046017          179 T-LRLK--------NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS-SLCMLKS  248 (443)
Q Consensus       179 ~-l~~~--------~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~-~~~~l~~  248 (443)
                      . +...        ..+.+..+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            1 1000        2234456666666666666666666666555555555566666666665555443332 2444455


Q ss_pred             CCcEecccccccccC--CCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCC
Q 046017          249 LTPLAIIDCKIFKRL--PNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLK  307 (443)
Q Consensus       249 L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~  307 (443)
                      |++|++++|.+.+..  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|++.
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            555555555443322  33344444444444444444322 223333344444444444333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.4e-36  Score=307.53  Aligned_cols=332  Identities=22%  Similarity=0.212  Sum_probs=231.5

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~   96 (443)
                      .++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|.+|+.+++|++|++++|.++.+|. .|+++++|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            3589999999998766667789999999999999998887777889999999999999999987764 488999999999


Q ss_pred             cCCCC-----------CCCCccEEEEeCCC-CcccC-ccccCCCCCCEEeccCCCCC-----------------------
Q 046017           97 LKNSS-----------EFEYLRVLRVEGAA-IRELP-ESIGKSTLLSELELKNCSEL-----------------------  140 (443)
Q Consensus        97 ls~~~-----------~l~~L~~L~l~~n~-~~~lp-~~l~~l~~L~~L~l~~n~~~-----------------------  140 (443)
                      +++|.           ++++|++|++++|. ++.+| ..+.++++|++|++++|.+.                       
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            98863           45788899998887 67776 45777888888888877653                       


Q ss_pred             ---------CCCCcCEEEccCCCCCCCCC-------CC-CCCccccc--cCccc-----cccc-----------------
Q 046017          141 ---------KLKSLRRIKMSKCSNLKRFP-------KI-ASCNKVGI--TGIKR-----LSST-----------------  179 (443)
Q Consensus       141 ---------~l~~L~~L~l~~~~~l~~~~-------~~-~~l~~L~l--~~l~~-----l~~~-----------------  179 (443)
                               .+++|++|++++|...+ ++       .. .+++.|++  +.+..     ++..                 
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTT-CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             cccchhhHhhcccccEEEccCCcccc-ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence                     25677777777754332 21       11 33333333  11110     0000                 


Q ss_pred             ---------------------------------------------------ccccCCCCCcccCCcc-cCCcccceeecc
Q 046017          180 ---------------------------------------------------LRLKNCSSLESLPSSL-CMLKSLRFLETI  207 (443)
Q Consensus       180 ---------------------------------------------------l~~~~~~~l~~lp~~~-~~l~~L~~L~ls  207 (443)
                                                                         +.. ..+.++.+|..+ ..+++|++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l-~~n~l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV-ENSKVFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE-ESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred             cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe-ccCccccCCHHHHhcCccccEEEcc
Confidence                                                               000 112233455544 357777777777


Q ss_pred             ccccccccc---ccccCCCCcceeeccCccCCCCCC--chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCC
Q 046017          208 ACKKLERLP---ESLGQLALLCELKMIKCSSFESLP--SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTA  282 (443)
Q Consensus       208 ~n~~~~~~p---~~l~~l~~L~~L~ls~n~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  282 (443)
                      +|.+.+.+|   ..++.+++|++|++++|.+.+..+  ..+..+++|++|++++|++. .+|..+..+++|++|++++|.
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence            777766553   235667777888887776654321  34667777888888887774 567777777778888888887


Q ss_pred             CcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccC
Q 046017          283 IREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNL  362 (443)
Q Consensus       283 l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~  362 (443)
                      ++.+|..+  .++|++|++++|++++++   ..+++|++|++++|+++.+|.. ..     .++|++|++++|.++.++.
T Consensus       422 l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~-~~-----l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          422 IRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA-SL-----FPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             CSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCG-GG-----CTTCCEEECCSSCCCCCCT
T ss_pred             cccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCc-cc-----CccCCEEecCCCccCCcCH
Confidence            77776544  257788888888777665   4677888888888888888863 22     2678888888888777754


Q ss_pred             C
Q 046017          363 D  363 (443)
Q Consensus       363 ~  363 (443)
                      .
T Consensus       491 ~  491 (549)
T 2z81_A          491 G  491 (549)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.1e-35  Score=300.86  Aligned_cols=374  Identities=19%  Similarity=0.123  Sum_probs=298.4

Q ss_pred             ccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcE
Q 046017           16 IERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSE   94 (443)
Q Consensus        16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~   94 (443)
                      ..+++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..++.+++|++|++++|.++.+ |..+.++++|++
T Consensus        54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            4688999999999998777888999999999999999998888899999999999999999999977 578999999999


Q ss_pred             EecCCCC----------CCCCccEEEEeCCCCccc-CccccCCCCCC--EEeccCCCCC-------CCC-----------
Q 046017           95 LELKNSS----------EFEYLRVLRVEGAAIREL-PESIGKSTLLS--ELELKNCSEL-------KLK-----------  143 (443)
Q Consensus        95 L~ls~~~----------~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~--~L~l~~n~~~-------~l~-----------  143 (443)
                      |++++|.          .+++|++|++++|.++.+ |..+..+++|+  +|++++|.+.       ...           
T Consensus       134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~  213 (606)
T 3t6q_A          134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ  213 (606)
T ss_dssp             EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred             EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence            9999873          358899999999998877 45578889998  8888888654       111           


Q ss_pred             -----------------------------------------CcCEEEccCCCCCCCCCCC-----CCCccccc--cCccc
Q 046017          144 -----------------------------------------SLRRIKMSKCSNLKRFPKI-----ASCNKVGI--TGIKR  175 (443)
Q Consensus       144 -----------------------------------------~L~~L~l~~~~~l~~~~~~-----~~l~~L~l--~~l~~  175 (443)
                                                               +|++|++++| .++.++..     .+++.|++  +.+..
T Consensus       214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~  292 (606)
T 3t6q_A          214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSE  292 (606)
T ss_dssp             CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSC
T ss_pred             hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCC
Confidence                                                     5667777775 44445442     56677777  77778


Q ss_pred             cccccccc--------CCCCCcc-cCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCCCC--Cchh
Q 046017          176 LSSTLRLK--------NCSSLES-LPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESL--PSSL  243 (443)
Q Consensus       176 l~~~l~~~--------~~~~l~~-lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~--p~~~  243 (443)
                      +|..+...        ..+.+.. .|..+..+++|++|++++|...+.+|. .+..+++|++|++++|.+.+..  +..+
T Consensus       293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  372 (606)
T 3t6q_A          293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL  372 (606)
T ss_dssp             CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred             CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence            87654322        2233333 466789999999999999988877665 4889999999999999887655  7788


Q ss_pred             hcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCccc-C-hhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCC
Q 046017          244 CMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-P-ESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLK  320 (443)
Q Consensus       244 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p-~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~  320 (443)
                      ..+++|++|++++|++.+..|..+..+++|++|++++|.++.. + ..+..+++|++|++++|.++.. |..+..+++|+
T Consensus       373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  452 (606)
T 3t6q_A          373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ  452 (606)
T ss_dssp             TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred             ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence            9999999999999999888888999999999999999999854 3 3488999999999999999965 57789999999


Q ss_pred             eeeCCCCCCCc--cC--cccccCCCCCcccccccccccCCCCcc-cCChhhhhhHHHhccccccc--------cccccee
Q 046017          321 YLKPFENNSDR--IP--EYLRSSPTSIPSELRSLNLSVDSGNSL-NLDLNKLSEIVKEGWMKQSF--------HGQSWIK  387 (443)
Q Consensus       321 ~L~ls~n~l~~--lp--~~~~~~~~~lp~~L~~L~l~~N~l~~l-~~~~~~l~~l~~~~~~~~~~--------~~~~~~~  387 (443)
                      +|++++|+++.  +|  ..+..+     ++|++|++++|.++.+ |..+..++.+...+...+.+        .....+ 
T Consensus       453 ~L~L~~n~l~~~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-  526 (606)
T 3t6q_A          453 HLNLQGNHFPKGNIQKTNSLQTL-----GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-  526 (606)
T ss_dssp             EEECTTCBCGGGEECSSCGGGGC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred             EEECCCCCCCccccccchhhccC-----CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence            99999999964  23  345444     7999999999998887 56666666654444333322        223334 


Q ss_pred             EEEecCCCC
Q 046017          388 SMYFPGNEI  396 (443)
Q Consensus       388 ~~~l~g~~i  396 (443)
                      .+++.+|.+
T Consensus       527 ~L~L~~N~l  535 (606)
T 3t6q_A          527 YLNLASNHI  535 (606)
T ss_dssp             EEECCSSCC
T ss_pred             EEECcCCcc
Confidence            666677654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.6e-35  Score=295.57  Aligned_cols=324  Identities=18%  Similarity=0.179  Sum_probs=230.0

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCCCcEEecccccccccc-ccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEe
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERL-LDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELE   96 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~   96 (443)
                      ++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+ +..|..+++|++|++++|.++.+ |..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            68999999999977777888999999999999999887665 56799999999999999999865 78899999999999


Q ss_pred             cCCCC------------CCCCccEEEEeCCCCccc-Ccc-ccCCCCCCEEeccCCCCC----------CCCCcCEEEccC
Q 046017           97 LKNSS------------EFEYLRVLRVEGAAIREL-PES-IGKSTLLSELELKNCSEL----------KLKSLRRIKMSK  152 (443)
Q Consensus        97 ls~~~------------~l~~L~~L~l~~n~~~~l-p~~-l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~  152 (443)
                      +++|.            .+++|++|++++|.++.+ |.. +.++++|++|++++|.+.          ...+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            99873            468999999999998877 554 788999999999999765          226788888888


Q ss_pred             CCCCCCCCCC-------------CCCccccccCcccccccccccCCCCCcccCCcccC---Ccccceeeccccccccccc
Q 046017          153 CSNLKRFPKI-------------ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCM---LKSLRFLETIACKKLERLP  216 (443)
Q Consensus       153 ~~~l~~~~~~-------------~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~---l~~L~~L~ls~n~~~~~~p  216 (443)
                      |. +..++..             .+++.|++.            +|...+..|..+..   .++|+.|++++|...+...
T Consensus       190 n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls------------~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  256 (455)
T 3v47_A          190 IT-LQDMNEYWLGWEKCGNPFKNTSITTLDLS------------GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF  256 (455)
T ss_dssp             CB-CTTCSTTCTTHHHHCCTTTTCEEEEEECT------------TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred             Cc-ccccchhhccccccccccccceeeeEecC------------CCcccccchhhhhccccccceeeEeecccccccccc
Confidence            53 3333321             122223330            11111122222221   2455555555543322110


Q ss_pred             ----------cccc--CCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc
Q 046017          217 ----------ESLG--QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR  284 (443)
Q Consensus       217 ----------~~l~--~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  284 (443)
                                ..+.  ..++|++|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  336 (455)
T 3v47_A          257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG  336 (455)
T ss_dssp             TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence                      0111  1256777777777777777777777777888888777777666667777777888888877777


Q ss_pred             cc-ChhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCCCccCcccc-cCCCCCcccccccccccCCCCcc
Q 046017          285 EV-PESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNSDRIPEYLR-SSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       285 ~l-p~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l~~lp~~~~-~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                      .+ |..+..+++|++|++++|+++.+ |..+..+++|++|++++|+++.+|.... .+     ++|++|++++|.++.-
T Consensus       337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL-----TSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBCCC
T ss_pred             CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC-----CcccEEEccCCCcccC
Confidence            55 45567777788888888777765 5667777778888887777777776442 22     5777778877766543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-35  Score=312.11  Aligned_cols=317  Identities=16%  Similarity=0.151  Sum_probs=235.8

Q ss_pred             CCccccCCCCCcEEecccccccc-----------------ccccccC--CCCcccEEEeecCchh-hhhhhhccCCCCcE
Q 046017           35 FPSSLCVLKSLRSLQIIDCKKFE-----------------RLLDELG--NLETLLVLRVEGAAIR-ELSQSLGQLALLSE   94 (443)
Q Consensus        35 ~p~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~~~--~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~   94 (443)
                      +|..++++++|++|+|++|.+.+                 .+|..++  ++++|++|++++|.+. .+|..+.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            66667777777777777777666                 2677766  7777777777777654 66777777777777


Q ss_pred             EecCCCCC-------------------CCCccEEEEeCCCCcccCc--cccCCCCCCEEeccCCCCC------CCCCcCE
Q 046017           95 LELKNSSE-------------------FEYLRVLRVEGAAIRELPE--SIGKSTLLSELELKNCSEL------KLKSLRR  147 (443)
Q Consensus        95 L~ls~~~~-------------------l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~l~~n~~~------~l~~L~~  147 (443)
                      |++++|..                   +++|+.|++++|.++.+|.  .+.++++|++|++++|.+.      .+++|++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~  599 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTD  599 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceE
Confidence            77777641                   1267777777777777777  6777777777777777554      5567777


Q ss_pred             EEccCCCCCCCCCCC----CC-Cccccc--cCccccccccccc-----------CCCCCcccC---Cccc--CCccccee
Q 046017          148 IKMSKCSNLKRFPKI----AS-CNKVGI--TGIKRLSSTLRLK-----------NCSSLESLP---SSLC--MLKSLRFL  204 (443)
Q Consensus       148 L~l~~~~~l~~~~~~----~~-l~~L~l--~~l~~l~~~l~~~-----------~~~~l~~lp---~~~~--~l~~L~~L  204 (443)
                      |++++|. +..+|..    .+ ++.|++  |.+..+|..+...           +|...+.+|   ..+.  .+++|++|
T Consensus       600 L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L  678 (876)
T 4ecn_A          600 LKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV  678 (876)
T ss_dssp             EECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred             EECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence            7777754 4466654    34 666666  5566666443222           222222222   2233  34589999


Q ss_pred             ecccccccccccccc-cCCCCcceeeccCccCCCCCCchhhcC--------CCCCcEecccccccccCCCCCC--CCCCC
Q 046017          205 ETIACKKLERLPESL-GQLALLCELKMIKCSSFESLPSSLCML--------KSLTPLAIIDCKIFKRLPNELG--NLKCL  273 (443)
Q Consensus       205 ~ls~n~~~~~~p~~l-~~l~~L~~L~ls~n~~~~~~p~~~~~l--------~~L~~L~l~~n~~~~~~~~~l~--~l~~L  273 (443)
                      ++++|.+. .+|..+ ..+++|+.|++++|.+. .+|..+...        ++|++|++++|++. .+|..+.  .+++|
T Consensus       679 ~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L  755 (876)
T 4ecn_A          679 TLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL  755 (876)
T ss_dssp             ECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred             EccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence            99998877 566554 48999999999999876 666654432        39999999999986 7888887  99999


Q ss_pred             ceEEecCCCCcccChhccCCCCCCEEEccC------CCCC-CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccc
Q 046017          274 AALIVKGTAIREVPESLGYLSSLAKLELSN------NNLK-RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSE  346 (443)
Q Consensus       274 ~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~------n~l~-~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~  346 (443)
                      +.|++++|.++.+|..+..+++|+.|++++      |++. .+|..+..+++|++|++++|+++.+|..+       +++
T Consensus       756 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l-------~~~  828 (876)
T 4ecn_A          756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-------TPQ  828 (876)
T ss_dssp             CEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-------CSS
T ss_pred             CEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh-------cCC
Confidence            999999999999999999999999999987      5555 78889999999999999999999999864       269


Q ss_pred             ccccccccCCCCcccC
Q 046017          347 LRSLNLSVDSGNSLNL  362 (443)
Q Consensus       347 L~~L~l~~N~l~~l~~  362 (443)
                      |+.|++++|.+..++.
T Consensus       829 L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          829 LYILDIADNPNISIDV  844 (876)
T ss_dssp             SCEEECCSCTTCEEEC
T ss_pred             CCEEECCCCCCCccCh
Confidence            9999999999888754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=294.35  Aligned_cols=117  Identities=17%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecC
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELK   98 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls   98 (443)
                      ++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|+++++|++|++++|.++.+|..  .+++|++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence            5677777777765544455677777777777777776666666777777777777777777766654  56666666666


Q ss_pred             CCC-----------CCCCccEEEEeCCCCcccCccccCCCCC--CEEeccCCCC
Q 046017           99 NSS-----------EFEYLRVLRVEGAAIRELPESIGKSTLL--SELELKNCSE  139 (443)
Q Consensus        99 ~~~-----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L--~~L~l~~n~~  139 (443)
                      +|.           .+++|++|++++|.++.  ..+..+++|  ++|++++|.+
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence            542           23455555555555443  223444444  5555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-34  Score=304.47  Aligned_cols=343  Identities=20%  Similarity=0.150  Sum_probs=229.5

Q ss_pred             CccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEecccccccccc-ccccCCCCcccEEEeecCchhhh-hhh
Q 046017            8 CNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERL-LDELGNLETLLVLRVEGAAIREL-SQS   85 (443)
Q Consensus         8 c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~l-p~~   85 (443)
                      ++|..+.. ..+++++|++++|.+.+..|..|.++++|++|++++|...+.+ |.+|+++++|++|++++|.++.+ |..
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            66777877 6789999999999977777889999999999999999777766 78899999999999999999965 789


Q ss_pred             hccCCCCcEEecCCCC------------CCCCccEEEEeCCCCcccC--ccccCCCCCCEEeccCCCCC--------CC-
Q 046017           86 LGQLALLSELELKNSS------------EFEYLRVLRVEGAAIRELP--ESIGKSTLLSELELKNCSEL--------KL-  142 (443)
Q Consensus        86 ~~~l~~L~~L~ls~~~------------~l~~L~~L~l~~n~~~~lp--~~l~~l~~L~~L~l~~n~~~--------~l-  142 (443)
                      |.++++|++|++++|.            .+++|++|++++|.++.++  ..++++++|++|++++|.+.        .+ 
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~  172 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ  172 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence            9999999999998863            5689999999999987663  56899999999999999764        22 


Q ss_pred             -CCcCEEEccCCCCCCCCCCC-C---------CCccccc--cCcc-ccccccc---------------------------
Q 046017          143 -KSLRRIKMSKCSNLKRFPKI-A---------SCNKVGI--TGIK-RLSSTLR---------------------------  181 (443)
Q Consensus       143 -~~L~~L~l~~~~~l~~~~~~-~---------~l~~L~l--~~l~-~l~~~l~---------------------------  181 (443)
                       ++|+.|++++|......|.. .         .++.|++  +.+. ..+..+.                           
T Consensus       173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l  252 (844)
T 3j0a_A          173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI  252 (844)
T ss_dssp             HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred             CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence             77888888887655544432 1         2455555  3222 1111110                           


Q ss_pred             --------------------ccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc
Q 046017          182 --------------------LKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS  241 (443)
Q Consensus       182 --------------------~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~  241 (443)
                                          ..++......|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.
T Consensus       253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred             CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence                                001111122244566666777777777666666666666677777777777666666566


Q ss_pred             hhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh----------
Q 046017          242 SLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE----------  311 (443)
Q Consensus       242 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~----------  311 (443)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++.    +++|+.|++++|+++.+|.          
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~l  408 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHL  408 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred             HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeec
Confidence            66667777777777776655444556666677777776666654432    2333333333333332221          


Q ss_pred             ------------hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017          312 ------------SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       312 ------------~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                                  .+..+++|++|++++|+++.++......   -.++|++|++++|.++
T Consensus       409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~L~~L~Ls~N~l~  464 (844)
T 3j0a_A          409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS---ENPSLEQLFLGENMLQ  464 (844)
T ss_dssp             CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC---SCTTCCBCEEESCCCS
T ss_pred             ccCccccCchhhhhhcCCccceeeCCCCcccccccccccc---cCCccccccCCCCccc
Confidence                        2335666677777776665544321100   1245555555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-34  Score=289.15  Aligned_cols=336  Identities=18%  Similarity=0.169  Sum_probs=224.3

Q ss_pred             ceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecCCC
Q 046017           22 CGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELKNS  100 (443)
Q Consensus        22 ~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~~  100 (443)
                      ++|++++|+ ++.+|..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.++.+ |..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNG-LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSC-CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCC-ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            689999998 457887665  8999999999998877778899999999999999999966 689999999999999997


Q ss_pred             C-------CCCCccEEEEeCCCCcc--cCccccCCCCCCEEeccCCCCC-----CCCCc--CEEEccCCCC--CCCCCCC
Q 046017          101 S-------EFEYLRVLRVEGAAIRE--LPESIGKSTLLSELELKNCSEL-----KLKSL--RRIKMSKCSN--LKRFPKI  162 (443)
Q Consensus       101 ~-------~l~~L~~L~l~~n~~~~--lp~~l~~l~~L~~L~l~~n~~~-----~l~~L--~~L~l~~~~~--l~~~~~~  162 (443)
                      .       .+++|++|++++|.++.  +|..++++++|++|++++|.+.     .+++|  ++|++++|..  ....|..
T Consensus        80 ~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~  159 (520)
T 2z7x_B           80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG  159 (520)
T ss_dssp             CCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred             ceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccccccccccccc
Confidence            4       67899999999999876  5788999999999999999765     66777  9999999766  3444443


Q ss_pred             -CCCc--------------------------c---ccc--cC----ccccccccc-ccCCCCCcc---------------
Q 046017          163 -ASCN--------------------------K---VGI--TG----IKRLSSTLR-LKNCSSLES---------------  190 (443)
Q Consensus       163 -~~l~--------------------------~---L~l--~~----l~~l~~~l~-~~~~~~l~~---------------  190 (443)
                       ..++                          .   +++  +.    +..++..+. ......++.               
T Consensus       160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  239 (520)
T 2z7x_B          160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR  239 (520)
T ss_dssp             TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred             ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence             3322                          1   111  10    000000000 000000000               


Q ss_pred             cCCcccCCcccceeecccccccccccccc-----cCCCCcceeeccCccCCCCCC-ch----------------------
Q 046017          191 LPSSLCMLKSLRFLETIACKKLERLPESL-----GQLALLCELKMIKCSSFESLP-SS----------------------  242 (443)
Q Consensus       191 lp~~~~~l~~L~~L~ls~n~~~~~~p~~l-----~~l~~L~~L~ls~n~~~~~~p-~~----------------------  242 (443)
                      ++..+ ..++|++|++++|.+.+.+|..+     +.++.|+.+++++|.+  .+| ..                      
T Consensus       240 ~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~  316 (520)
T 2z7x_B          240 ILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH  316 (520)
T ss_dssp             HHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc
Confidence            00000 12356666666666665666555     5555555555555443  223 11                      


Q ss_pred             ---hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc---cChhccCCCCCCEEEccCCCCCC-CChh-hh
Q 046017          243 ---LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE---VPESLGYLSSLAKLELSNNNLKR-TPES-LY  314 (443)
Q Consensus       243 ---~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L~~L~ls~n~l~~-lp~~-l~  314 (443)
                         +..+++|++|++++|++.+..|..+..+++|++|++++|+++.   +|..+..+++|++|++++|+++. +|.. +.
T Consensus       317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence               1456677777777777766667777777777777777777763   34556777777777777777775 6643 56


Q ss_pred             CCCCCCeeeCCCCCC-CccCcccccCCCCCcccccccccccCCCCcccCChhhhhhH
Q 046017          315 QLSSLKYLKPFENNS-DRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI  370 (443)
Q Consensus       315 ~l~~L~~L~ls~n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~~l  370 (443)
                      .+++|++|++++|++ +.+|..       +|++|++|++++|.++.+|..+..++.+
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~-------l~~~L~~L~Ls~N~l~~ip~~~~~l~~L  446 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRC-------LPPRIKVLDLHSNKIKSIPKQVVKLEAL  446 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGS-------CCTTCCEEECCSSCCCCCCGGGGGCTTC
T ss_pred             cCccCCEEECcCCCCCcchhhh-------hcccCCEEECCCCcccccchhhhcCCCC
Confidence            667777777777766 333332       3356777777777766666655444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=292.40  Aligned_cols=123  Identities=21%  Similarity=0.210  Sum_probs=108.0

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~   96 (443)
                      .+++++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..|+++++|++|++++|.++.+| ..|.++++|++|+
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            468999999999976666678999999999999999877777788999999999999999998776 7899999999999


Q ss_pred             cCCCC----------CCCCccEEEEeCCCCcc--cCccccCCCCCCEEeccCCCCC
Q 046017           97 LKNSS----------EFEYLRVLRVEGAAIRE--LPESIGKSTLLSELELKNCSEL  140 (443)
Q Consensus        97 ls~~~----------~l~~L~~L~l~~n~~~~--lp~~l~~l~~L~~L~l~~n~~~  140 (443)
                      +++|.          .+++|++|++++|.++.  +|..+.++++|++|++++|.+.
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            99863          56899999999999775  6889999999999999999754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.1e-34  Score=290.66  Aligned_cols=135  Identities=21%  Similarity=0.196  Sum_probs=80.0

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~   96 (443)
                      +...+++++++++ ++.+|..+.  ++|++|++++|.+.+..|..|+++++|++|++++|.++.+ |..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~-L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRN-LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSC-CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCC-CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3344666666665 334555443  5666666666665555555666666666666666666654 45566666666666


Q ss_pred             cCCCC-------CCCCccEEEEeCCCCcccC--ccccCCCCCCEEeccCCCCC-----CCCCc--CEEEccCCCC
Q 046017           97 LKNSS-------EFEYLRVLRVEGAAIRELP--ESIGKSTLLSELELKNCSEL-----KLKSL--RRIKMSKCSN  155 (443)
Q Consensus        97 ls~~~-------~l~~L~~L~l~~n~~~~lp--~~l~~l~~L~~L~l~~n~~~-----~l~~L--~~L~l~~~~~  155 (443)
                      +++|.       .+++|++|++++|.++.+|  ..++++++|++|++++|.+.     .+++|  ++|++++|..
T Consensus       107 Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             CCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence            66653       4566666666666666543  55666677777777666543     33344  6666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.2e-34  Score=295.48  Aligned_cols=367  Identities=16%  Similarity=0.126  Sum_probs=276.0

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecC
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELK   98 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls   98 (443)
                      .-++++.++++ ++.+|..+.  +++++|++++|.+.+..+..|+++++|++|++++|.++.+ |..|.++++|++|+++
T Consensus        12 ~~~~~~c~~~~-l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           12 PNITYQCMDQK-LSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTTEEECTTSC-CSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCceEccCCC-cccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            34678999877 677887554  7999999999998877777999999999999999999977 5789999999999999


Q ss_pred             CCC----------CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC---------CCCCcCEEEccCCCCCCC
Q 046017           99 NSS----------EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL---------KLKSLRRIKMSKCSNLKR  158 (443)
Q Consensus        99 ~~~----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~~l~~  158 (443)
                      +|.          ++++|++|++++|.++.++ ..++++++|++|++++|.+.         ++++|++|++++|.....
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            873          6799999999999998886 67899999999999999764         688999999999744332


Q ss_pred             CCCC-CC---Cc----cccc--cCcccccccc------------------------------------------------
Q 046017          159 FPKI-AS---CN----KVGI--TGIKRLSSTL------------------------------------------------  180 (443)
Q Consensus       159 ~~~~-~~---l~----~L~l--~~l~~l~~~l------------------------------------------------  180 (443)
                      .+.. ..   ++    .+++  +.+..++...                                                
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence            2221 11   11    1222  2222111100                                                


Q ss_pred             ----------------------------------------------------------------cccCCCCCcccCC---
Q 046017          181 ----------------------------------------------------------------RLKNCSSLESLPS---  193 (443)
Q Consensus       181 ----------------------------------------------------------------~~~~~~~l~~lp~---  193 (443)
                                                                                      ...+|. ++.+|.   
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~-l~~lp~~~l  327 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTLDL  327 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCC-CSSCCCCCC
T ss_pred             ccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEccccc-CcccccCCC
Confidence                                                                            000111 122231   


Q ss_pred             -----------------cccCCcccceeeccccccccc--ccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEec
Q 046017          194 -----------------SLCMLKSLRFLETIACKKLER--LPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAI  254 (443)
Q Consensus       194 -----------------~~~~l~~L~~L~ls~n~~~~~--~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l  254 (443)
                                       .+..+++|++|++++|.+.+.  .|..+..+++|++|++++|.+.+ +|..+..+++|++|++
T Consensus       328 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l  406 (606)
T 3vq2_A          328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDF  406 (606)
T ss_dssp             SSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEEC
T ss_pred             CccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeEC
Confidence                             123445666666666655544  36778889999999999988654 6688899999999999


Q ss_pred             ccccccccCC-CCCCCCCCCceEEecCCCCc-ccChhccCCCCCCEEEccCCCCCC--CChhhhCCCCCCeeeCCCCCCC
Q 046017          255 IDCKIFKRLP-NELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLKR--TPESLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       255 ~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~~--lp~~l~~l~~L~~L~ls~n~l~  330 (443)
                      ++|.+.+..+ ..+..+++|++|++++|.++ ..|..+..+++|++|++++|++..  +|..+..+++|++|++++|+++
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE  486 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence            9999988777 67899999999999999998 467789999999999999999996  6888999999999999999997


Q ss_pred             ccC-cccccCCCCCcccccccccccCCCCcc-cCChhhhhhHHHhcccccccc-------ccc-ceeEEEecCCCC
Q 046017          331 RIP-EYLRSSPTSIPSELRSLNLSVDSGNSL-NLDLNKLSEIVKEGWMKQSFH-------GQS-WIKSMYFPGNEI  396 (443)
Q Consensus       331 ~lp-~~~~~~~~~lp~~L~~L~l~~N~l~~l-~~~~~~l~~l~~~~~~~~~~~-------~~~-~~~~~~l~g~~i  396 (443)
                      .++ ..+..+     ++|++|++++|.++.+ |..+..++.+...+...+.+.       ... .++.+++.||++
T Consensus       487 ~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          487 QISWGVFDTL-----HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             EECTTTTTTC-----TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             ccChhhhccc-----ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence            765 445554     7999999999998887 666666666544443333322       111 246666766644

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.7e-34  Score=292.44  Aligned_cols=342  Identities=18%  Similarity=0.139  Sum_probs=207.8

Q ss_pred             cCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccC
Q 046017           10 IDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQL   89 (443)
Q Consensus        10 ~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l   89 (443)
                      +.++...-.+++++|++++|.+.+..|.+|.++++|++|++++|.+.+..|.+|+.+++|++|++++|.++.+|..  .+
T Consensus        43 L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l  120 (562)
T 3a79_B           43 LTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PM  120 (562)
T ss_dssp             CCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred             CccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence            3344433457999999999997666667899999999999999998887889999999999999999999999977  89


Q ss_pred             CCCcEEecCCCC-----------CCCCccEEEEeCCCCcccCccccCCCCC--CEEeccCCCC--C-----CCCCcC---
Q 046017           90 ALLSELELKNSS-----------EFEYLRVLRVEGAAIRELPESIGKSTLL--SELELKNCSE--L-----KLKSLR---  146 (443)
Q Consensus        90 ~~L~~L~ls~~~-----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L--~~L~l~~n~~--~-----~l~~L~---  146 (443)
                      ++|++|++++|.           ++++|++|++++|.++..  .+..+++|  ++|++++|.+  .     .+..+.   
T Consensus       121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~  198 (562)
T 3a79_B          121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV  198 (562)
T ss_dssp             TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred             ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence            999999999873           568999999999998753  35666666  9999999976  2     222222   


Q ss_pred             -EEEccCCCCCCCCCCC--CCCcc---ccc--cC--ccccccccccc-CCC---------------CCcccCCcccCCcc
Q 046017          147 -RIKMSKCSNLKRFPKI--ASCNK---VGI--TG--IKRLSSTLRLK-NCS---------------SLESLPSSLCMLKS  200 (443)
Q Consensus       147 -~L~l~~~~~l~~~~~~--~~l~~---L~l--~~--l~~l~~~l~~~-~~~---------------~l~~lp~~~~~l~~  200 (443)
                       .+++++|.....++..  ..++.   +++  +.  ...++..+... ...               .+..++..+ ..++
T Consensus       199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~  277 (562)
T 3a79_B          199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRP  277 (562)
T ss_dssp             EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSS
T ss_pred             EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hccc
Confidence             4577777666655543  33333   333  11  00000000000 000               000011101 1124


Q ss_pred             cceeecccccccccccccc-----------------------------------------------------cCCCCcce
Q 046017          201 LRFLETIACKKLERLPESL-----------------------------------------------------GQLALLCE  227 (443)
Q Consensus       201 L~~L~ls~n~~~~~~p~~l-----------------------------------------------------~~l~~L~~  227 (443)
                      |++|++++|.+.+.+|..+                                                     ..+++|++
T Consensus       278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~  357 (562)
T 3a79_B          278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF  357 (562)
T ss_dssp             EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred             ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence            4444444444443333322                                                     34555566


Q ss_pred             eeccCccCCCCCCchhhcCCCCCcEecccccccc--cCCCCCCCCCCCceEEecCCCCcc-cChh-ccCCCCCCEEEccC
Q 046017          228 LKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK--RLPNELGNLKCLAALIVKGTAIRE-VPES-LGYLSSLAKLELSN  303 (443)
Q Consensus       228 L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~-lp~~-~~~l~~L~~L~ls~  303 (443)
                      |++++|.+.+.+|..+..+++|++|++++|++.+  .+|..+..+++|++|++++|.++. +|.. +..+++|++|++++
T Consensus       358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS  437 (562)
T ss_dssp             EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred             EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence            6666655555555555555666666666655543  222345555566666666665554 4432 44555666666666


Q ss_pred             CCCCC-CChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCC
Q 046017          304 NNLKR-TPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLD  363 (443)
Q Consensus       304 n~l~~-lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~  363 (443)
                      |++++ +|..+.  ++|++|++++|+++.+|..++.+     ++|++|++++|.++.+|..
T Consensus       438 n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l-----~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          438 NMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHL-----QALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             SCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSS-----CCCSEEECCSSCCCCCCTT
T ss_pred             CCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCC-----CCCCEEECCCCCCCCCCHH
Confidence            65542 222221  45666666666666666555543     4566666666666655554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.7e-33  Score=293.32  Aligned_cols=327  Identities=22%  Similarity=0.158  Sum_probs=270.5

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCC--CcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEE
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKS--LRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSEL   95 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L   95 (443)
                      ++|+.|++++|.+.+..|..+..++.  |++|++++|.+.+..|..++.+++|++|++++|.++.+ |..+..+++|++|
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL  301 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred             ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence            67899999999877777888887755  99999999998888888899999999999999999854 5789999999999


Q ss_pred             ecCCC-------------------CCCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC------------CCC
Q 046017           96 ELKNS-------------------SEFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL------------KLK  143 (443)
Q Consensus        96 ~ls~~-------------------~~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~------------~l~  143 (443)
                      +++++                   ..+++|++|++++|.++.++ ..+.++++|++|++++|...            ..+
T Consensus       302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~  381 (680)
T 1ziw_A          302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS  381 (680)
T ss_dssp             ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred             eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence            99753                   35689999999999988774 45788999999999998532            236


Q ss_pred             CcCEEEccCCCCCCCCCCC----CCCccccc--cCcccccccccccCCCCCcccC-CcccCCcccceeeccccccccccc
Q 046017          144 SLRRIKMSKCSNLKRFPKI----ASCNKVGI--TGIKRLSSTLRLKNCSSLESLP-SSLCMLKSLRFLETIACKKLERLP  216 (443)
Q Consensus       144 ~L~~L~l~~~~~l~~~~~~----~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp-~~~~~l~~L~~L~ls~n~~~~~~p  216 (443)
                      +|+.|++++|......|..    .+++.|++  +.+.              +.+| ..+..+++|++|++++|.+.+..+
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  447 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG--------------QELTGQEWRGLENIFEIYLSYNKYLQLTR  447 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE--------------EECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc--------------cccCcccccCcccccEEecCCCCcceeCh
Confidence            8999999997554443433    44555655  3222              2344 457889999999999999888888


Q ss_pred             ccccCCCCcceeeccCccCC--CCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh------
Q 046017          217 ESLGQLALLCELKMIKCSSF--ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE------  288 (443)
Q Consensus       217 ~~l~~l~~L~~L~ls~n~~~--~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~------  288 (443)
                      ..+..+++|++|++++|.+.  +.+|..+..+++|++|++++|++.+..+..+..+++|++|++++|.++.++.      
T Consensus       448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  527 (680)
T 1ziw_A          448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG  527 (680)
T ss_dssp             TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred             hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence            88999999999999998765  5788889999999999999999987666778999999999999999986532      


Q ss_pred             ---hccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCC
Q 046017          289 ---SLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLD  363 (443)
Q Consensus       289 ---~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~  363 (443)
                         .+..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|...+..   + ++|++|++++|.++.++..
T Consensus       528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN---Q-VSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---C-TTCCEEECTTSCCCBCCHH
T ss_pred             cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC---C-CCCCEEECCCCcCCccChh
Confidence               26788999999999999999985 5899999999999999999999865432   1 6999999999999887553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=288.02  Aligned_cols=338  Identities=18%  Similarity=0.181  Sum_probs=200.4

Q ss_pred             ccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcE
Q 046017           16 IERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSE   94 (443)
Q Consensus        16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~   94 (443)
                      ..+++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..|+.+++|++|++++|.++.++. .++++++|++
T Consensus        49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  128 (570)
T 2z63_A           49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE  128 (570)
T ss_dssp             TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred             hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence            356778888888877555555667778888888888777666555667777777777777777766653 4666677777


Q ss_pred             EecCCCC-----------CCCCccEEEEeCCCCcccC-ccccCCCC---------------------------CCEEecc
Q 046017           95 LELKNSS-----------EFEYLRVLRVEGAAIRELP-ESIGKSTL---------------------------LSELELK  135 (443)
Q Consensus        95 L~ls~~~-----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~---------------------------L~~L~l~  135 (443)
                      |++++|.           ++++|++|++++|.++.++ ..++.+++                           |++|+++
T Consensus       129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  208 (570)
T 2z63_A          129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR  208 (570)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred             EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence            7776652           2456666666666655442 22322222                           3333333


Q ss_pred             CCC---------------------------------------------------------C---------CCCCCcCEEE
Q 046017          136 NCS---------------------------------------------------------E---------LKLKSLRRIK  149 (443)
Q Consensus       136 ~n~---------------------------------------------------------~---------~~l~~L~~L~  149 (443)
                      +|.                                                         .         ..+++|++|+
T Consensus       209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~  288 (570)
T 2z63_A          209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS  288 (570)
T ss_dssp             SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEE
T ss_pred             cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEE
Confidence            320                                                         0         0357777777


Q ss_pred             ccCCCCCCCCCCC---CCCccccc--cCccccccc-------ccccCCCCCcccCCcccCCcccceeecccccccccc--
Q 046017          150 MSKCSNLKRFPKI---ASCNKVGI--TGIKRLSST-------LRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERL--  215 (443)
Q Consensus       150 l~~~~~l~~~~~~---~~l~~L~l--~~l~~l~~~-------l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~--  215 (443)
                      +++| .++.+|..   .+++.|++  +.+..+|..       +...++.....++.  ..+++|++|++++|.+.+..  
T Consensus       289 l~~~-~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~  365 (570)
T 2z63_A          289 LVSV-TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC  365 (570)
T ss_dssp             EESC-EECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred             ecCc-cchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence            7775 44456654   24444555  444444431       11112222222222  45667777777776655432  


Q ss_pred             cccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCC-CCCCCCCCCceEEecCCCCc-ccChhccCC
Q 046017          216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLP-NELGNLKCLAALIVKGTAIR-EVPESLGYL  293 (443)
Q Consensus       216 p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~-~lp~~~~~l  293 (443)
                      |..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ ..|..+..+
T Consensus       366 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  444 (570)
T 2z63_A          366 SQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  444 (570)
T ss_dssp             EHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             cccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence            4556666777777777765544333 36666677777777766655444 34566667777777777666 345556666


Q ss_pred             CCCCEEEccCCCCC--CCChhhhCCCCCCeeeCCCCCCCcc-CcccccCCCCCcccccccccccCCCCcccC
Q 046017          294 SSLAKLELSNNNLK--RTPESLYQLSSLKYLKPFENNSDRI-PEYLRSSPTSIPSELRSLNLSVDSGNSLNL  362 (443)
Q Consensus       294 ~~L~~L~ls~n~l~--~lp~~l~~l~~L~~L~ls~n~l~~l-p~~~~~~~~~lp~~L~~L~l~~N~l~~l~~  362 (443)
                      ++|++|++++|++.  .+|..+..+++|++|++++|+++.+ |..+..+     ++|++|++++|.++.++.
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-----SSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCT
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc-----cCCCEEeCCCCcCCCCCH
Confidence            77777777777665  3566666677777777777766555 4444443     567777777776666643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-32  Score=288.53  Aligned_cols=138  Identities=19%  Similarity=0.112  Sum_probs=112.7

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~   96 (443)
                      .+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..++++++|++|++++|.++.+|. .|.++++|++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            3689999999998666555678899999999999988887778888899999999999999988885 588899999999


Q ss_pred             cCCCC----------CCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCC
Q 046017           97 LKNSS----------EFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSN  155 (443)
Q Consensus        97 ls~~~----------~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~  155 (443)
                      +++|.          ++++|++|++++|.++.+ |..+.++++|++|++++|.+.          .+++|++|++++|..
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            98762          568899999999986655 556778889999999888654          347788888888643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.7e-34  Score=271.29  Aligned_cols=260  Identities=20%  Similarity=0.215  Sum_probs=179.8

Q ss_pred             CCCCCc--cCCCCCccC---CCcceEEecCCCCCC--cCCccccCCCCCcEEeccc-cccccccccccCCCCcccEEEee
Q 046017            4 KIPSCN--IDGSTGIER---PCSCGLRLKNCSSLE--SFPSSLCVLKSLRSLQIID-CKKFERLLDELGNLETLLVLRVE   75 (443)
Q Consensus         4 ~~~~c~--~~g~~~~~~---~~L~~L~ls~~~~~~--~~p~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~l~   75 (443)
                      +.++|.  |.|+.|...   .++++|++++|.+.+  .+|..+.++++|++|++++ |.+.+.+|..++++++|++|+++
T Consensus        30 ~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls  109 (313)
T 1ogq_A           30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT  109 (313)
T ss_dssp             TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE
T ss_pred             CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc
Confidence            467898  999999754   689999999999877  8899999999999999995 88888899999999999999999


Q ss_pred             cCchh-hhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc-ccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCC
Q 046017           76 GAAIR-ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR-ELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKC  153 (443)
Q Consensus        76 ~n~l~-~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~-~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~  153 (443)
                      +|.++ .+|..+.++++|++|++++              |.++ .+|..+..+++|++|++++                 
T Consensus       110 ~n~l~~~~p~~~~~l~~L~~L~Ls~--------------N~l~~~~p~~~~~l~~L~~L~L~~-----------------  158 (313)
T 1ogq_A          110 HTNVSGAIPDFLSQIKTLVTLDFSY--------------NALSGTLPPSISSLPNLVGITFDG-----------------  158 (313)
T ss_dssp             EECCEEECCGGGGGCTTCCEEECCS--------------SEEESCCCGGGGGCTTCCEEECCS-----------------
T ss_pred             CCeeCCcCCHHHhCCCCCCEEeCCC--------------CccCCcCChHHhcCCCCCeEECcC-----------------
Confidence            98887 6777666665555555544              4433 4555555555555555444                 


Q ss_pred             CCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCC-CcceeeccC
Q 046017          154 SNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLA-LLCELKMIK  232 (443)
Q Consensus       154 ~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~-~L~~L~ls~  232 (443)
                                                                             |.+.+.+|..++.++ .|++|++++
T Consensus       159 -------------------------------------------------------N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          159 -------------------------------------------------------NRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             -------------------------------------------------------SCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             -------------------------------------------------------CcccCcCCHHHhhhhhcCcEEECcC
Confidence                                                                   444444454555554 555555555


Q ss_pred             ccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCC-CCCh
Q 046017          233 CSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLK-RTPE  311 (443)
Q Consensus       233 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~-~lp~  311 (443)
                      |.+.+.+|..+..++ |++|++++|.+.+..|..+..+++|++|++++|.++..++.+..+++|++|++++|+++ .+|.
T Consensus       184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  262 (313)
T 1ogq_A          184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ  262 (313)
T ss_dssp             SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred             CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh
Confidence            555555555555554 66666666666555566666666666666666666644444666777777777777777 6677


Q ss_pred             hhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCcccccccccccCC
Q 046017          312 SLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSELRSLNLSVDS  356 (443)
Q Consensus       312 ~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~L~~L~l~~N~  356 (443)
                      .+..+++|++|++++|+++ .+|.. ..+     ++|+.+++++|.
T Consensus       263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l-----~~L~~l~l~~N~  302 (313)
T 1ogq_A          263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNL-----QRFDVSAYANNK  302 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEEEECCCS-TTG-----GGSCGGGTCSSS
T ss_pred             HHhcCcCCCEEECcCCcccccCCCC-ccc-----cccChHHhcCCC
Confidence            7777777777777777774 56653 332     577777777774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.7e-33  Score=286.06  Aligned_cols=337  Identities=20%  Similarity=0.237  Sum_probs=234.9

Q ss_pred             CCccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hh
Q 046017            7 SCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QS   85 (443)
Q Consensus         7 ~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~   85 (443)
                      .|.|.|+ |         +.+++. .+.+|..+.  ++|++|++++|.+.+..|..|+++++|++|++++|.++.++ ..
T Consensus         3 ~C~~~~~-c---------~~~~~~-l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~   69 (549)
T 2z81_A            3 SCDASGV-C---------DGRSRS-FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA   69 (549)
T ss_dssp             EECTTSE-E---------ECTTSC-CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred             cCCCCce-E---------ECCCCc-cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence            4777775 3         556665 567887554  79999999999988777889999999999999999999766 78


Q ss_pred             hccCCCCcEEecCCCC----------CCCCccEEEEeCCCCcc--cCccccCCCCCCEEeccCCCCC---------CCCC
Q 046017           86 LGQLALLSELELKNSS----------EFEYLRVLRVEGAAIRE--LPESIGKSTLLSELELKNCSEL---------KLKS  144 (443)
Q Consensus        86 ~~~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~~~~--lp~~l~~l~~L~~L~l~~n~~~---------~l~~  144 (443)
                      |.++++|++|++++|.          .+++|++|++++|.++.  +|..++++++|++|++++|...         .+++
T Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  149 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS  149 (549)
T ss_dssp             TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence            9999999999999973          67999999999999885  4677899999999999999733         7889


Q ss_pred             cCEEEccCCCCCCCCCCC-CCCc---cccc--cCccccccccc-------cc--CCCCCccc------------------
Q 046017          145 LRRIKMSKCSNLKRFPKI-ASCN---KVGI--TGIKRLSSTLR-------LK--NCSSLESL------------------  191 (443)
Q Consensus       145 L~~L~l~~~~~l~~~~~~-~~l~---~L~l--~~l~~l~~~l~-------~~--~~~~l~~l------------------  191 (443)
                      |++|++++|.....+|.. ..++   .|++  +.+..+|..+.       ..  ..+.+..+                  
T Consensus       150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  229 (549)
T 2z81_A          150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA  229 (549)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred             cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence            999999997655555554 4333   3444  33333332110       00  01111111                  


Q ss_pred             --------------CCcccCCcccceeeccccccccc--c---------------------------------cccccCC
Q 046017          192 --------------PSSLCMLKSLRFLETIACKKLER--L---------------------------------PESLGQL  222 (443)
Q Consensus       192 --------------p~~~~~l~~L~~L~ls~n~~~~~--~---------------------------------p~~l~~l  222 (443)
                                    +..+..+++|+.+++++|...+.  +                                 +..+...
T Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~  309 (549)
T 2z81_A          230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL  309 (549)
T ss_dssp             EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred             ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence                          11112233444444444333221  0                                 0001112


Q ss_pred             CCcceeeccCccCCCCCCchh-hcCCCCCcEecccccccccCC---CCCCCCCCCceEEecCCCCcccC---hhccCCCC
Q 046017          223 ALLCELKMIKCSSFESLPSSL-CMLKSLTPLAIIDCKIFKRLP---NELGNLKCLAALIVKGTAIREVP---ESLGYLSS  295 (443)
Q Consensus       223 ~~L~~L~ls~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~lp---~~~~~l~~  295 (443)
                      ++|++|++++|.+ +.+|..+ ..+++|++|++++|++.+.+|   ..++.+++|++|++++|+++.++   ..+..+++
T Consensus       310 ~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence            4566777777654 3566665 468888899998888876553   34677888888888888888765   34778888


Q ss_pred             CCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017          296 LAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL  364 (443)
Q Consensus       296 L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~  364 (443)
                      |++|++++|+++.+|..+..+++|++|++++|+++.+|..       +|++|++|++++|.++.++..+
T Consensus       389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-------~~~~L~~L~Ls~N~l~~~~~~l  450 (549)
T 2z81_A          389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-------IPQTLEVLDVSNNNLDSFSLFL  450 (549)
T ss_dssp             CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-------SCTTCSEEECCSSCCSCCCCCC
T ss_pred             CCEEECCCCCCccCChhhcccccccEEECCCCCcccccch-------hcCCceEEECCCCChhhhcccC
Confidence            8888888888888888888888888888888888877764       3356666666666655554333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9e-33  Score=276.40  Aligned_cols=307  Identities=19%  Similarity=0.262  Sum_probs=173.3

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      .++++++|+++++. ...+|. +..+++|++|++++|.+.+ ++. ++.+++|++|++++|.++.++. +.++++|++|+
T Consensus        44 ~l~~l~~L~l~~~~-i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  118 (466)
T 1o6v_A           44 DLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  118 (466)
T ss_dssp             HHHTCCEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             HhccccEEecCCCC-CccCcc-hhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence            35677888887776 345554 6777788888888776544 333 7777888888888877776665 77778888888


Q ss_pred             cCCCC--------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCCCCCC-
Q 046017           97 LKNSS--------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKRFPKI-  162 (443)
Q Consensus        97 ls~~~--------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~~~~~-  162 (443)
                      +++|.        .+++|++|++++|.++.++. +..+++|++|+++++...     .+++|++|++++|. ++.++.. 
T Consensus       119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~  196 (466)
T 1o6v_A          119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLA  196 (466)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGG
T ss_pred             CCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhc
Confidence            87763        56778888888777776654 667777777777533211     66777777777753 4444332 


Q ss_pred             --CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017          163 --ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES  238 (443)
Q Consensus       163 --~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~  238 (443)
                        .+++.|++  +.+..+               +. ++.+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+.
T Consensus       197 ~l~~L~~L~l~~n~l~~~---------------~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDI---------------TP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             GCTTCSEEECCSSCCCCC---------------GG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC
T ss_pred             cCCCCCEEEecCCccccc---------------cc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccc
Confidence              44444544  222221               11 3344555555555544332 1 2344455555555555544433


Q ss_pred             CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017          239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS  318 (443)
Q Consensus       239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~  318 (443)
                      .+  +..+++|++|++++|.+.+. +. +..+++|++|++++|+++.++. +..+++|+.|++++|++++++. +..+++
T Consensus       259 ~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~  332 (466)
T 1o6v_A          259 AP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTK  332 (466)
T ss_dssp             GG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTT
T ss_pred             hh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCcc
Confidence            22  44455555555555554332 22 4445555555555555554443 4445555555555555554443 445555


Q ss_pred             CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc
Q 046017          319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                      |++|++++|+++.++ .+..+     ++|++|++++|.++.+
T Consensus       333 L~~L~l~~n~l~~~~-~l~~l-----~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          333 LQRLFFYNNKVSDVS-SLANL-----TNINWLSAGHNQISDL  368 (466)
T ss_dssp             CCEEECCSSCCCCCG-GGTTC-----TTCCEEECCSSCCCBC
T ss_pred             CCEeECCCCccCCch-hhccC-----CCCCEEeCCCCccCcc
Confidence            555555555554442 22222     4555555555544444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.7e-32  Score=274.41  Aligned_cols=313  Identities=21%  Similarity=0.265  Sum_probs=258.0

Q ss_pred             ccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEE
Q 046017           16 IERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSEL   95 (443)
Q Consensus        16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L   95 (443)
                      ..+++|++|++++|.+ ..+|. +.++++|++|++++|.+.+..+  ++++++|++|++++|.++.++. +.++++|++|
T Consensus        65 ~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A           65 EYLNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             hhhcCCCEEECCCCcc-CCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence            3689999999999984 45555 8999999999999998765444  9999999999999999998876 8999999999


Q ss_pred             ecCCC--------CCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCC
Q 046017           96 ELKNS--------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPK  161 (443)
Q Consensus        96 ~ls~~--------~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~  161 (443)
                      ++++|        ..+++|++|+++ +.+..++. +.++++|++|++++|...      .+++|++|++++|. +..++.
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITP  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG
T ss_pred             ECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc-cccccc
Confidence            99886        367999999997 45555554 889999999999999765      77899999999964 444332


Q ss_pred             C---CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017          162 I---ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES  238 (443)
Q Consensus       162 ~---~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~  238 (443)
                      .   .+++.|++.+             +.+..++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.
T Consensus       217 ~~~l~~L~~L~l~~-------------n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  280 (466)
T 1o6v_A          217 LGILTNLDELSLNG-------------NQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI  280 (466)
T ss_dssp             GGGCTTCCEEECCS-------------SCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred             ccccCCCCEEECCC-------------CCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc
Confidence            3   5666666611             1222332 47788999999999988876554  88999999999999987764


Q ss_pred             CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017          239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS  318 (443)
Q Consensus       239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~  318 (443)
                      .+  +..+++|++|++++|++.+..+  +..+++|++|++++|+++.+++ +..+++|++|++++|+++.++ .+..+++
T Consensus       281 ~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~  354 (466)
T 1o6v_A          281 SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTN  354 (466)
T ss_dssp             GG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred             cc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCC
Confidence            43  7889999999999999866433  7889999999999999998776 788999999999999999985 6899999


Q ss_pred             CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017          319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL  364 (443)
Q Consensus       319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~  364 (443)
                      |++|++++|+++.+++ +..+     ++|++|++++|.++.+|..+
T Consensus       355 L~~L~l~~n~l~~~~~-~~~l-----~~L~~L~l~~n~~~~~p~~~  394 (466)
T 1o6v_A          355 INWLSAGHNQISDLTP-LANL-----TRITQLGLNDQAWTNAPVNY  394 (466)
T ss_dssp             CCEEECCSSCCCBCGG-GTTC-----TTCCEEECCCEEEECCCBCC
T ss_pred             CCEEeCCCCccCccch-hhcC-----CCCCEEeccCCcccCCchhh
Confidence            9999999999987766 5554     78999999999888876654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.5e-33  Score=271.08  Aligned_cols=293  Identities=17%  Similarity=0.140  Sum_probs=237.7

Q ss_pred             cCCCcceEEecCCCCCCcCCc-cccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcE
Q 046017           17 ERPCSCGLRLKNCSSLESFPS-SLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSE   94 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~   94 (443)
                      .++++++|+++++. .+.+|. .+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.++ ..+.++++|++
T Consensus        43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            45889999999987 556665 4678999999999999877766778999999999999999998775 56888999999


Q ss_pred             EecCCCC----------CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCC
Q 046017           95 LELKNSS----------EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKR  158 (443)
Q Consensus        95 L~ls~~~----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~  158 (443)
                      |++++|.          .+++|++|++++|.++.++ ..+..+++|++|++++|.+.     .+++|++|++++| .++ 
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n-~l~-  199 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLS-  199 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSS-CCS-
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccc-ccc-
Confidence            9988762          4577888888888776664 34677778888888777554     5566666666663 111 


Q ss_pred             CCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017          159 FPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES  238 (443)
Q Consensus       159 ~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~  238 (443)
                                                         .+...++|++|++++|.+... |..  ..++|+.|++++|.+.+.
T Consensus       200 -----------------------------------~~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~  241 (390)
T 3o6n_A          200 -----------------------------------TLAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT  241 (390)
T ss_dssp             -----------------------------------EEECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC
T ss_pred             -----------------------------------ccCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc
Confidence                                               123345899999999876554 433  357899999999987653


Q ss_pred             CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017          239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS  318 (443)
Q Consensus       239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~  318 (443)
                        ..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++.+|..+..+++|++|++++|+++.+|..+..+++
T Consensus       242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~  319 (390)
T 3o6n_A          242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR  319 (390)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred             --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCc
Confidence              578899999999999999988888899999999999999999999998888899999999999999999988999999


Q ss_pred             CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCc
Q 046017          319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~  359 (443)
                      |++|++++|+++.+|.  ..     .++|++|++++|.++.
T Consensus       320 L~~L~L~~N~i~~~~~--~~-----~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          320 LENLYLDHNSIVTLKL--ST-----HHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CSEEECCSSCCCCCCC--CT-----TCCCSEEECCSSCEEH
T ss_pred             CCEEECCCCccceeCc--hh-----hccCCEEEcCCCCccc
Confidence            9999999999988863  22     2689999999997653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.5e-32  Score=280.14  Aligned_cols=122  Identities=21%  Similarity=0.215  Sum_probs=107.6

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEec
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELEL   97 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l   97 (443)
                      +++++|||++|.+.+..+.+|.++++|++|+|++|.+.+..|.+|+++++|++|+|++|+++.+| ..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            48999999999965555578999999999999999987766778999999999999999999888 56899999999999


Q ss_pred             CCCC----------CCCCccEEEEeCCCCcc--cCccccCCCCCCEEeccCCCCC
Q 046017           98 KNSS----------EFEYLRVLRVEGAAIRE--LPESIGKSTLLSELELKNCSEL  140 (443)
Q Consensus        98 s~~~----------~l~~L~~L~l~~n~~~~--lp~~l~~l~~L~~L~l~~n~~~  140 (443)
                      ++|.          ++++|++|++++|.++.  +|..+..+++|++|++++|++.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            9873          67899999999999774  5777889999999999999754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=5.1e-32  Score=260.46  Aligned_cols=290  Identities=22%  Similarity=0.229  Sum_probs=214.8

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      .+++|++|+++++. ...+|. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus        42 ~l~~L~~L~l~~~~-i~~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           42 ELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY  116 (347)
T ss_dssp             HHTTCSEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             hcccccEEEEeCCc-cccchh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence            67899999999988 455665 8899999999999997654 554 889999999999999999876 588888888888


Q ss_pred             cCCCC--------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCCC
Q 046017           97 LKNSS--------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPKI  162 (443)
Q Consensus        97 ls~~~--------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~  162 (443)
                      +++|.        .+++|++|++++|.....+..+..+++|++|++++|...      .+++|++|++++|. +.     
T Consensus       117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~-----  190 (347)
T 4fmz_A          117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IE-----  190 (347)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-CC-----
T ss_pred             CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-cc-----
Confidence            88763        557777777777753333333677777777777777544      45666666666642 21     


Q ss_pred             CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCch
Q 046017          163 ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS  242 (443)
Q Consensus       163 ~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~  242 (443)
                                                 .++. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.. . 
T Consensus       191 ---------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-  238 (347)
T 4fmz_A          191 ---------------------------DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-  238 (347)
T ss_dssp             ---------------------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-
T ss_pred             ---------------------------cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-
Confidence                                       2222 5677788888888876665433  677888888888887765533 3 


Q ss_pred             hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCe
Q 046017          243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKY  321 (443)
Q Consensus       243 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~  321 (443)
                      +..+++|++|++++|.+.+ + ..+..+++|++|++++|.++.++ .+..+++|+.|++++|+++.. |..+..+++|++
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            7778888888888887754 3 45777888888888888888775 467788888888888888854 466788888888


Q ss_pred             eeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017          322 LKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       322 L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      |++++|+++.+++ +..+     ++|++|++++|.++
T Consensus       316 L~L~~n~l~~~~~-~~~l-----~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP-LASL-----SKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG-GGGC-----TTCSEESSSCC---
T ss_pred             EEccCCccccccC-hhhh-----hccceeehhhhccc
Confidence            8888888877766 4443     68888888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=291.27  Aligned_cols=310  Identities=16%  Similarity=0.112  Sum_probs=208.8

Q ss_pred             ccCCCcceEEecCCCCCCcC-CccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhh-hhhh--hccCCC
Q 046017           16 IERPCSCGLRLKNCSSLESF-PSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRE-LSQS--LGQLAL   91 (443)
Q Consensus        16 ~~~~~L~~L~ls~~~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-lp~~--~~~l~~   91 (443)
                      ..+++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|..|+.+++|++|++++|.++. +|..  +.++++
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  124 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA  124 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred             cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence            46788999999998766666 6778899999999999988887778889999999999999998874 5544  888999


Q ss_pred             CcEEecCCCC-----------CCCCccEEEEeCCCCccc-CccccCC--CCCCEEeccCCCCC--------CCC------
Q 046017           92 LSELELKNSS-----------EFEYLRVLRVEGAAIREL-PESIGKS--TLLSELELKNCSEL--------KLK------  143 (443)
Q Consensus        92 L~~L~ls~~~-----------~l~~L~~L~l~~n~~~~l-p~~l~~l--~~L~~L~l~~n~~~--------~l~------  143 (443)
                      |++|++++|.           ++++|++|++++|.++.+ |..+..+  ++|+.|+++.|...        .++      
T Consensus       125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  204 (844)
T 3j0a_A          125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM  204 (844)
T ss_dssp             CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred             CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence            9999988863           568899999999886543 5555555  67777777777543        122      


Q ss_pred             CcCEEEccCCCCCCCCCCC------------------------------------------CCCccccc--cCcccccc-
Q 046017          144 SLRRIKMSKCSNLKRFPKI------------------------------------------ASCNKVGI--TGIKRLSS-  178 (443)
Q Consensus       144 ~L~~L~l~~~~~l~~~~~~------------------------------------------~~l~~L~l--~~l~~l~~-  178 (443)
                      +|++|++++|.....++..                                          .+++.|++  +.+..++. 
T Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~  284 (844)
T 3j0a_A          205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR  284 (844)
T ss_dssp             CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred             ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence            2777777776322221110                                          13344444  34433321 


Q ss_pred             cc---------cccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCC
Q 046017          179 TL---------RLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSL  249 (443)
Q Consensus       179 ~l---------~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L  249 (443)
                      .+         ...++...+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|
T Consensus       285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  364 (844)
T 3j0a_A          285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL  364 (844)
T ss_dssp             CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred             hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence            11         111233223345678889999999999988888778889999999999999998877667778889999


Q ss_pred             CcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh----------------------hccCCCCCCEEEccCCCCC
Q 046017          250 TPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE----------------------SLGYLSSLAKLELSNNNLK  307 (443)
Q Consensus       250 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~----------------------~~~~l~~L~~L~ls~n~l~  307 (443)
                      ++|++++|.+.+ ++    .+++|+.|++++|+++.+|.                      .+..+++|+.|++++|+++
T Consensus       365 ~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  439 (844)
T 3j0a_A          365 QTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS  439 (844)
T ss_dssp             CEEEEETCCSCC-CS----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred             CEEECCCCCCCc-cc----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence            999999988743 22    13444444444444443332                      1335666666666666666


Q ss_pred             CCCh--hhhCCCCCCeeeCCCCCCC
Q 046017          308 RTPE--SLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       308 ~lp~--~l~~l~~L~~L~ls~n~l~  330 (443)
                      .++.  .+..+++|++|++++|.++
T Consensus       440 ~~~~~~~~~~~~~L~~L~Ls~N~l~  464 (844)
T 3j0a_A          440 SCSGDQTPSENPSLEQLFLGENMLQ  464 (844)
T ss_dssp             CCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred             ccccccccccCCccccccCCCCccc
Confidence            4432  2334555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-32  Score=283.58  Aligned_cols=292  Identities=17%  Similarity=0.142  Sum_probs=237.5

Q ss_pred             cCCCcceEEecCCCCCCcCCc-cccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcE
Q 046017           17 ERPCSCGLRLKNCSSLESFPS-SLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSE   94 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~   94 (443)
                      .+.+++.+++++|. .+.+|. .+..+++|++|++++|.+.+..|..|+.+++|++|++++|.++.+| ..|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            45788999999987 455554 5678999999999999987777778999999999999999999776 45788999999


Q ss_pred             EecCCCC----------CCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCC
Q 046017           95 LELKNSS----------EFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKR  158 (443)
Q Consensus        95 L~ls~~~----------~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~  158 (443)
                      |++++|.          .+++|++|++++|.++.++. .+..+++|++|++++|.+.     .+++|+.|++++| .+. 
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n-~l~-  205 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLS-  205 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSS-CCS-
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccC-ccc-
Confidence            9998862          45778888888888766644 5777888888888887654     5566667766663 111 


Q ss_pred             CCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017          159 FPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES  238 (443)
Q Consensus       159 ~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~  238 (443)
                                                         .+...++|++|++++|.+... +..+  .++|+.|++++|.+.+ 
T Consensus       206 -----------------------------------~l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~-  246 (597)
T 3oja_B          206 -----------------------------------TLAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD-  246 (597)
T ss_dssp             -----------------------------------EEECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC-
T ss_pred             -----------------------------------cccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC-
Confidence                                               123445799999999876543 3322  3689999999998876 


Q ss_pred             CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017          239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS  318 (443)
Q Consensus       239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~  318 (443)
                       +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++
T Consensus       247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~  325 (597)
T 3oja_B          247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR  325 (597)
T ss_dssp             -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred             -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCC
Confidence             3678899999999999999988888899999999999999999999998888899999999999999999998999999


Q ss_pred             CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017          319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      |++|++++|.+..+|.  ..     .++|+.|++++|.+.
T Consensus       326 L~~L~L~~N~l~~~~~--~~-----~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          326 LENLYLDHNSIVTLKL--ST-----HHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CSEEECCSSCCCCCCC--CT-----TCCCSEEECCSSCEE
T ss_pred             CCEEECCCCCCCCcCh--hh-----cCCCCEEEeeCCCCC
Confidence            9999999999988863  22     268999999999764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.9e-32  Score=270.95  Aligned_cols=315  Identities=16%  Similarity=0.137  Sum_probs=248.6

Q ss_pred             ccCCCcceEEecCCCCCCcC-CccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchh-hhhhh--hccCCC
Q 046017           16 IERPCSCGLRLKNCSSLESF-PSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR-ELSQS--LGQLAL   91 (443)
Q Consensus        16 ~~~~~L~~L~ls~~~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~lp~~--~~~l~~   91 (443)
                      ..+++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..++++++|++|++++|.++ .+|..  +..+++
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  130 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS  130 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred             ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence            36889999999999876666 467899999999999999988888999999999999999999998 45554  899999


Q ss_pred             CcEEecCCCC-----------CCCCccEEEEeCCCCccc-CccccCC--CCCCEEeccCCCCC----------------C
Q 046017           92 LSELELKNSS-----------EFEYLRVLRVEGAAIREL-PESIGKS--TLLSELELKNCSEL----------------K  141 (443)
Q Consensus        92 L~~L~ls~~~-----------~l~~L~~L~l~~n~~~~l-p~~l~~l--~~L~~L~l~~n~~~----------------~  141 (443)
                      |++|++++|.           .+++|++|++++|.++.+ |..+..+  .+|+.|++++|...                .
T Consensus       131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  210 (455)
T 3v47_A          131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK  210 (455)
T ss_dssp             CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred             CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence            9999999873           568999999999997765 4455544  67888888888655                2


Q ss_pred             CCCcCEEEccCCCCCCCCCCC-------CCCccccccCcccccccccccCCCCCcc-cCCccc--CCcccceeecccccc
Q 046017          142 LKSLRRIKMSKCSNLKRFPKI-------ASCNKVGITGIKRLSSTLRLKNCSSLES-LPSSLC--MLKSLRFLETIACKK  211 (443)
Q Consensus       142 l~~L~~L~l~~~~~l~~~~~~-------~~l~~L~l~~l~~l~~~l~~~~~~~l~~-lp~~~~--~l~~L~~L~ls~n~~  211 (443)
                      +++|++|++++|......|..       .+++.|++.+-......+..   ..+.. .+..+.  ..++|++|++++|.+
T Consensus       211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  287 (455)
T 3v47_A          211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH---TNFKDPDNFTFKGLEASGVKTCDLSKSKI  287 (455)
T ss_dssp             TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC---CSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred             cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch---hhhccCcccccccccccCceEEEecCccc
Confidence            357888888887544322221       23444444111100000000   00000 011122  236899999999999


Q ss_pred             cccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCccc-Chhc
Q 046017          212 LERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESL  290 (443)
Q Consensus       212 ~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~  290 (443)
                      .+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++.+ |..+
T Consensus       288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence            999999999999999999999999888888999999999999999999777788899999999999999999966 7789


Q ss_pred             cCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC-ccC
Q 046017          291 GYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD-RIP  333 (443)
Q Consensus       291 ~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~-~lp  333 (443)
                      ..+++|++|++++|+++++|. .+..+++|++|++++|++. ..|
T Consensus       368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999999999885 5689999999999999995 444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=268.50  Aligned_cols=281  Identities=17%  Similarity=0.148  Sum_probs=205.3

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~   96 (443)
                      .+++++|++++|.+.+..+..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.++.+|. .|.++++|++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            4589999999998666667788999999999999998877778889999999999999999998874 478888888888


Q ss_pred             cCCCC----------CCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCC
Q 046017           97 LKNSS----------EFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLK  157 (443)
Q Consensus        97 ls~~~----------~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~  157 (443)
                      +++|.          .+++|++|++++|.++.+ |..+.++++|++|++++|.+.        .+++|+.|++++|. +.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~  189 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-IN  189 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CC
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-Cc
Confidence            88763          457777777777776655 445677777777777777543        45566666666632 11


Q ss_pred             CCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCC
Q 046017          158 RFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFE  237 (443)
Q Consensus       158 ~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~  237 (443)
                      .+                               .+..+..+++|++|++++|...+.+|.......+|++|++++|.+..
T Consensus       190 ~~-------------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  238 (477)
T 2id5_A          190 AI-------------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA  238 (477)
T ss_dssp             EE-------------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred             Ee-------------------------------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence            11                               12345667777777777777777777666666677777777776654


Q ss_pred             CCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCCh-hhhC
Q 046017          238 SLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPE-SLYQ  315 (443)
Q Consensus       238 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~-~l~~  315 (443)
                      ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++.+ |..+..+++|+.|++++|+++.+|. .+..
T Consensus       239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  318 (477)
T 2id5_A          239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS  318 (477)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred             cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence            3335667777777777777777665566677777777777777777754 5567777777777777777777764 4567


Q ss_pred             CCCCCeeeCCCCCCC
Q 046017          316 LSSLKYLKPFENNSD  330 (443)
Q Consensus       316 l~~L~~L~ls~n~l~  330 (443)
                      +++|++|++++|.+.
T Consensus       319 l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          319 VGNLETLILDSNPLA  333 (477)
T ss_dssp             GGGCCEEECCSSCEE
T ss_pred             CcccCEEEccCCCcc
Confidence            777777777777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.5e-32  Score=271.43  Aligned_cols=310  Identities=20%  Similarity=0.164  Sum_probs=160.3

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcc-------------cEEEeecCchhhhh
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETL-------------LVLRVEGAAIRELS   83 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L-------------~~L~l~~n~l~~lp   83 (443)
                      ..++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++.+++|             ++|+++++.++.+|
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            357899999999986 8999999999999999999999888999999888765             88888888887777


Q ss_pred             hhhccCCCCcEEecCCCC------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEcc
Q 046017           84 QSLGQLALLSELELKNSS------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMS  151 (443)
Q Consensus        84 ~~~~~l~~L~~L~ls~~~------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~  151 (443)
                      ..   .++|++|++++|.      .+++|++|++++|.++.+|..   .++|++|++++|.+.      .+++|++|+++
T Consensus        88 ~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD  161 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             CC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECC
Confidence            52   3577777777653      235677777777766666542   256777777766543      55666777777


Q ss_pred             CCCCCCCCCCC-CCCccccc--cCccccccccccc--------CCCCCcccCCcccCCcccceeeccccccccccccccc
Q 046017          152 KCSNLKRFPKI-ASCNKVGI--TGIKRLSSTLRLK--------NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLG  220 (443)
Q Consensus       152 ~~~~l~~~~~~-~~l~~L~l--~~l~~l~~~l~~~--------~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~  220 (443)
                      +| .++.+|.. .+++.|++  +.+..+|. +...        ..+.+..+|..   .++|++|++++|.+. .+| .++
T Consensus       162 ~N-~l~~lp~~~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp-~~~  234 (454)
T 1jl5_A          162 NN-SLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELP-ELQ  234 (454)
T ss_dssp             SS-CCSCCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCC-CCT
T ss_pred             CC-cCcccCCCcccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-ccc-ccC
Confidence            64 45556655 56666655  33332221 0000        11112222221   124555555554433 344 245


Q ss_pred             CCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEE
Q 046017          221 QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLE  300 (443)
Q Consensus       221 ~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~  300 (443)
                      .+++|++|++++|.+.+ +|..   +++|++|++++|.+.+ +|..   +++|++|++++|.++.+|..   .++|+.|+
T Consensus       235 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~  303 (454)
T 1jl5_A          235 NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLN  303 (454)
T ss_dssp             TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEE
T ss_pred             CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEE
Confidence            55555555555544432 3321   2455555555555432 3332   24555555555555544321   14555555


Q ss_pred             ccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccC
Q 046017          301 LSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNL  362 (443)
Q Consensus       301 ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~  362 (443)
                      +++|++++++.   ..++|++|++++|+++.+|..        +++|++|++++|.++.+|.
T Consensus       304 l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~--------~~~L~~L~L~~N~l~~lp~  354 (454)
T 1jl5_A          304 ASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL--------PPRLERLIASFNHLAEVPE  354 (454)
T ss_dssp             CCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC--------CTTCCEEECCSSCCSCCCC
T ss_pred             CcCCcCCcccC---CcCcCCEEECCCCcccccccc--------CCcCCEEECCCCccccccc
Confidence            55555554432   113666666666666666652        2566666666666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=268.21  Aligned_cols=300  Identities=19%  Similarity=0.198  Sum_probs=247.3

Q ss_pred             cceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecCC
Q 046017           21 SCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELKN   99 (443)
Q Consensus        21 L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~   99 (443)
                      -+.++.++.+ +..+|..+.  +++++|++++|.+.+..+..|.++++|++|++++|.++.+ |..|.++++|++|++++
T Consensus        13 ~~~v~c~~~~-l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKR-FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCC-CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCC-cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            3567777766 667787553  6899999999998887788999999999999999999966 68899999999999988


Q ss_pred             CC----------CCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCCCCC
Q 046017          100 SS----------EFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKRFP  160 (443)
Q Consensus       100 ~~----------~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~~~~  160 (443)
                      |.          ++++|++|++++|.++.+ |..+.++++|++|++++|.+.        .+++|++|++++| .++.++
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~  168 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIP  168 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCC
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccC
Confidence            62          567888888888887655 456777888888888887654        5677777777774 222221


Q ss_pred             CCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCC
Q 046017          161 KIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP  240 (443)
Q Consensus       161 ~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p  240 (443)
                                                     +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|
T Consensus       169 -------------------------------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          169 -------------------------------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             -------------------------------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred             -------------------------------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence                                           1347788999999999999888777889999999999999999988888


Q ss_pred             chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCCCC-ChhhhCCCC
Q 046017          241 SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLKRT-PESLYQLSS  318 (443)
Q Consensus       241 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~  318 (443)
                      .......+|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|+++.+ |..+..+++
T Consensus       218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence            877777899999999999864333568899999999999999997754 578899999999999999976 678999999


Q ss_pred             CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCc
Q 046017          319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~  359 (443)
                      |++|++++|+++.+|......    .++|++|++++|.+..
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHS----VGNLETLILDSNPLAC  334 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSC----GGGCCEEECCSSCEEC
T ss_pred             CCEEECCCCcCceeCHhHcCC----CcccCEEEccCCCccC
Confidence            999999999999998765432    2699999999997653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=5.8e-31  Score=261.87  Aligned_cols=284  Identities=17%  Similarity=0.150  Sum_probs=202.2

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      .+++|++|++++|.+. .+| .+..+++|++|++++|.+.+ +|  ++.+++|++|++++|.++.+|  ++.+++|++|+
T Consensus        40 ~l~~L~~L~Ls~n~l~-~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           40 QLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN  112 (457)
T ss_dssp             HHTTCCEEECCSSCCC-CCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             HcCCCCEEEccCCCcc-cCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence            5789999999999854 456 58999999999999998665 44  889999999999999999875  88999999999


Q ss_pred             cCCCC-------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCCC-
Q 046017           97 LKNSS-------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPKI-  162 (443)
Q Consensus        97 ls~~~-------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~-  162 (443)
                      +++|.       .+++|++|++++|.++.++  ++.+++|++|++++|...      .+++|++|++++| .++.+|-. 
T Consensus       113 L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~l~~  189 (457)
T 3bz5_A          113 CDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQ  189 (457)
T ss_dssp             CCSSCCSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCCCTT
T ss_pred             CCCCcCCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceecccc
Confidence            99873       6688999999999988875  788899999999988533      7788899999885 45555532 


Q ss_pred             -CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc
Q 046017          163 -ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS  241 (443)
Q Consensus       163 -~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~  241 (443)
                       .+++.|++.             .+.+..+  .++.+++|++|++++|.+.+ +|  ++.+++|++|++++|.+.+..+.
T Consensus       190 l~~L~~L~l~-------------~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~  251 (457)
T 3bz5_A          190 NKLLNRLNCD-------------TNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS  251 (457)
T ss_dssp             CTTCCEEECC-------------SSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred             CCCCCEEECc-------------CCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence             445555551             1122222  25566777777777776665 45  66777777777777776654443


Q ss_pred             hhhcCC-------CCCcEecccccccccCCCCCCCCCCCceEEecCCCC-cccCh--------hccCCCCCCEEEccCCC
Q 046017          242 SLCMLK-------SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAI-REVPE--------SLGYLSSLAKLELSNNN  305 (443)
Q Consensus       242 ~~~~l~-------~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-~~lp~--------~~~~l~~L~~L~ls~n~  305 (443)
                      .+.+++       +|+.|++++|...+.+|  ++.+++|+.|++++|.. ..+|.        .+..+++|++|++++|+
T Consensus       252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~  329 (457)
T 3bz5_A          252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE  329 (457)
T ss_dssp             TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred             HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence            333333       44555666665555554  35667777777777742 23332        14455677777777777


Q ss_pred             CCCCChhhhCCCCCCeeeCCCCCCCcc
Q 046017          306 LKRTPESLYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       306 l~~lp~~l~~l~~L~~L~ls~n~l~~l  332 (443)
                      +++++  +..+++|+.|++++|+++.+
T Consensus       330 l~~l~--l~~l~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          330 LTELD--VSHNTKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             CSCCC--CTTCTTCSEEECCSSCCCBC
T ss_pred             ccccc--cccCCcCcEEECCCCCCCCc
Confidence            77763  66777777777777777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=4.3e-31  Score=258.14  Aligned_cols=273  Identities=14%  Similarity=0.074  Sum_probs=239.1

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhh-hccCCCCcEE
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS-LGQLALLSEL   95 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L   95 (443)
                      .+++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..|..++.+++|++|++++|.++.+|.. |.++++|++|
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            578999999999996656666899999999999999998877788899999999999999999999865 5899999999


Q ss_pred             ecCCCC----------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC---CCCCcCEEEccCCCCCCCCCCC
Q 046017           96 ELKNSS----------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL---KLKSLRRIKMSKCSNLKRFPKI  162 (443)
Q Consensus        96 ~ls~~~----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~---~l~~L~~L~l~~~~~l~~~~~~  162 (443)
                      ++++|.          .+++|++|++++|.++.++  +..+++|++|++++|...   ..++|++|++++| .+.     
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n-~l~-----  218 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SIN-----  218 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS-CCC-----
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCC-eee-----
Confidence            999873          5689999999999998886  677999999999999766   6678999999985 222     


Q ss_pred             CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCch
Q 046017          163 ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS  242 (443)
Q Consensus       163 ~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~  242 (443)
                                                 .+|..  ..++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..|..
T Consensus       219 ---------------------------~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          219 ---------------------------VVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             ---------------------------EEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ---------------------------ecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence                                       22222  346899999999887764  57889999999999999998888999


Q ss_pred             hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCee
Q 046017          243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYL  322 (443)
Q Consensus       243 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L  322 (443)
                      +..+++|++|++++|++.+ +|..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.++  +..+++|++|
T Consensus       268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L  344 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL  344 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEE
T ss_pred             ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEE
Confidence            9999999999999999854 677778899999999999999999998999999999999999999886  6789999999


Q ss_pred             eCCCCCCCc
Q 046017          323 KPFENNSDR  331 (443)
Q Consensus       323 ~ls~n~l~~  331 (443)
                      ++++|.+..
T Consensus       345 ~l~~N~~~~  353 (390)
T 3o6n_A          345 TLSHNDWDC  353 (390)
T ss_dssp             ECCSSCEEH
T ss_pred             EcCCCCccc
Confidence            999999854

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=6e-31  Score=261.54  Aligned_cols=316  Identities=21%  Similarity=0.196  Sum_probs=247.5

Q ss_pred             ccCCCcceEEecCCCCCCcCCccccCCCCC-------------cEEeccccccccccccccCCCCcccEEEeecCchhhh
Q 046017           16 IERPCSCGLRLKNCSSLESFPSSLCVLKSL-------------RSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL   82 (443)
Q Consensus        16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L-------------~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l   82 (443)
                      ..+++|++|++++|.+.+.+|..++++++|             ++|++++|.+. .+|..   .++|++|++++|.++.+
T Consensus        31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~---~~~L~~L~l~~n~l~~l  106 (454)
T 1jl5_A           31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTEL  106 (454)
T ss_dssp             ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSC
T ss_pred             hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC---cCCCCEEEccCCcCCcc
Confidence            367899999999999888999989988875             99999998854 45552   47899999999999988


Q ss_pred             hhhhccCCCCcEEecCCCC-----CC-CCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----CCCCcCEEEccC
Q 046017           83 SQSLGQLALLSELELKNSS-----EF-EYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL----KLKSLRRIKMSK  152 (443)
Q Consensus        83 p~~~~~l~~L~~L~ls~~~-----~l-~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~  152 (443)
                      |..   +++|++|++++|.     .+ ++|++|++++|.++.+| .++++++|++|++++|.+.    ...+|++|++++
T Consensus       107 p~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~  182 (454)
T 1jl5_A          107 PEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN  182 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             ccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcC
Confidence            854   4789999999874     23 68999999999999999 5999999999999999776    456899999999


Q ss_pred             CCCCCCCCCC---CCCccccc--cCcccccccc---ccc--CCCCCcccCCcccCCcccceeecccccccccccccccCC
Q 046017          153 CSNLKRFPKI---ASCNKVGI--TGIKRLSSTL---RLK--NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQL  222 (443)
Q Consensus       153 ~~~l~~~~~~---~~l~~L~l--~~l~~l~~~l---~~~--~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l  222 (443)
                      | .++.+|..   .+++.|++  +.+..+|...   ...  ..+.+..+|. ++.+++|++|++++|.+.+ +|..   +
T Consensus       183 n-~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~  256 (454)
T 1jl5_A          183 N-QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---P  256 (454)
T ss_dssp             S-CCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---C
T ss_pred             C-cCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---c
Confidence            6 56667755   55566666  6666655422   211  2345668885 8899999999999987765 5543   4


Q ss_pred             CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEcc
Q 046017          223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELS  302 (443)
Q Consensus       223 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls  302 (443)
                      ++|++|++++|.+.+ +|..   +++|++|++++|.+.+ +|..   .++|++|++++|+++.++..   .++|++|+++
T Consensus       257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls  325 (454)
T 1jl5_A          257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVS  325 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECC
T ss_pred             cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECC
Confidence            899999999988765 5653   4889999999999865 3321   26899999999999877632   2589999999


Q ss_pred             CCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc---cCChhhh
Q 046017          303 NNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL---NLDLNKL  367 (443)
Q Consensus       303 ~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l---~~~~~~l  367 (443)
                      +|+++++|..   +++|++|++++|+++.+|.        .+++|++|++++|.++.+   |.++.++
T Consensus       326 ~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          326 NNKLIELPAL---PPRLERLIASFNHLAEVPE--------LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             SSCCSCCCCC---CTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             CCcccccccc---CCcCCEEECCCCccccccc--------hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence            9999998864   6899999999999999988        237899999999988774   4555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=7.9e-30  Score=243.48  Aligned_cols=259  Identities=20%  Similarity=0.209  Sum_probs=154.5

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecC
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELK   98 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls   98 (443)
                      ++++++++++. ...+|..+.  +++++|++++|.+.+..+..++++++|++|++++|.++.+ |..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~-l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSC-CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCC-ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            78999999887 566776553  6899999999987776666899999999999999999866 6778887777777776


Q ss_pred             CCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCCCCCCCCCCccccc
Q 046017           99 NSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKRFPKIASCNKVGI  170 (443)
Q Consensus        99 ~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l  170 (443)
                      +              |.++.+|..+.  ++|++|++++|.+.        .+++|++|++++|.. +             
T Consensus       109 ~--------------n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~-------------  158 (330)
T 1xku_A          109 K--------------NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-K-------------  158 (330)
T ss_dssp             S--------------SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-C-------------
T ss_pred             C--------------CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-C-------------
Confidence            6              44555555433  45555555555321        223333333333211 0             


Q ss_pred             cCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCC
Q 046017          171 TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLT  250 (443)
Q Consensus       171 ~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~  250 (443)
                                      ..+..+..+..+++|++|++++|.+.. +|..+.  ++|++|++++|.+.+..|..+..+++|+
T Consensus       159 ----------------~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~  219 (330)
T 1xku_A          159 ----------------SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLA  219 (330)
T ss_dssp             ----------------GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred             ----------------ccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence                            001222345555566666666554432 343332  5566666666555555555555566666


Q ss_pred             cEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh-hhh------CCCCCCeee
Q 046017          251 PLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE-SLY------QLSSLKYLK  323 (443)
Q Consensus       251 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~------~l~~L~~L~  323 (443)
                      +|++++|.+.+..+..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.++. .+.      ..+.|+.|+
T Consensus       220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~  299 (330)
T 1xku_A          220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  299 (330)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             EEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence            6666666555444445555566666666666666666555556666666666666665542 221      124555666


Q ss_pred             CCCCCCC
Q 046017          324 PFENNSD  330 (443)
Q Consensus       324 ls~n~l~  330 (443)
                      +++|.+.
T Consensus       300 l~~N~~~  306 (330)
T 1xku_A          300 LFSNPVQ  306 (330)
T ss_dssp             CCSSSSC
T ss_pred             eecCccc
Confidence            6665553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=6.3e-30  Score=245.81  Aligned_cols=269  Identities=22%  Similarity=0.203  Sum_probs=227.8

Q ss_pred             ccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEE
Q 046017           16 IERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSEL   95 (443)
Q Consensus        16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L   95 (443)
                      ..+++|++|++++|.+ +.++. +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.++. +..+++|++|
T Consensus        63 ~~~~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L  137 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSL  137 (347)
T ss_dssp             GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred             hhcCCccEEEccCCcc-ccchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence            3689999999999984 55665 8999999999999997654 54 69999999999999999998877 8899999999


Q ss_pred             ecCCCC---------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCC
Q 046017           96 ELKNSS---------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFP  160 (443)
Q Consensus        96 ~ls~~~---------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~  160 (443)
                      ++++|.         .+++|++|++++|.+..++. +..+++|++|++++|.+.      .+++|+++++++|. +.   
T Consensus       138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~---  212 (347)
T 4fmz_A          138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ-IT---  212 (347)
T ss_dssp             ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CC---
T ss_pred             ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCC-CC---
Confidence            999983         56899999999999888877 889999999999999765      67788888888852 22   


Q ss_pred             CCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCC
Q 046017          161 KIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP  240 (443)
Q Consensus       161 ~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p  240 (443)
                                                   .++. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ + 
T Consensus       213 -----------------------------~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-  258 (347)
T 4fmz_A          213 -----------------------------DITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-  258 (347)
T ss_dssp             -----------------------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-
T ss_pred             -----------------------------CCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-
Confidence                                         2222 6788999999999988766443  8899999999999987765 3 


Q ss_pred             chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc-cChhccCCCCCCEEEccCCCCCCCChhhhCCCCC
Q 046017          241 SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE-VPESLGYLSSLAKLELSNNNLKRTPESLYQLSSL  319 (443)
Q Consensus       241 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L  319 (443)
                      +.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.++. .+..+..+++|++|++++|.++.+++ +..+++|
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L  335 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKM  335 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTC
T ss_pred             hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcc
Confidence            468899999999999998865 3 458889999999999999984 45678899999999999999999877 8999999


Q ss_pred             CeeeCCCCCCCc
Q 046017          320 KYLKPFENNSDR  331 (443)
Q Consensus       320 ~~L~ls~n~l~~  331 (443)
                      ++|++++|.+++
T Consensus       336 ~~L~l~~N~i~~  347 (347)
T 4fmz_A          336 DSADFANQVIKK  347 (347)
T ss_dssp             SEESSSCC----
T ss_pred             ceeehhhhcccC
Confidence            999999998863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.5e-30  Score=266.45  Aligned_cols=272  Identities=15%  Similarity=0.078  Sum_probs=239.5

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhh-hccCCCCcEE
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS-LGQLALLSEL   95 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L   95 (443)
                      .+++|++|++++|.+.+..|..|+.+++|++|+|++|.+.+..|..|+.+++|++|++++|.++.+|.. |..+++|++|
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            578999999999997666667899999999999999998887788889999999999999999998865 6899999999


Q ss_pred             ecCCCC----------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC---CCCCcCEEEccCCCCCCCCCCC
Q 046017           96 ELKNSS----------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL---KLKSLRRIKMSKCSNLKRFPKI  162 (443)
Q Consensus        96 ~ls~~~----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~---~l~~L~~L~l~~~~~l~~~~~~  162 (443)
                      ++++|.          .+++|++|++++|.++.++  +..+++|+.|++++|...   ...+|++|++++|. +..    
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~-l~~----  225 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INV----  225 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC-CCE----
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCc-ccc----
Confidence            999873          5689999999999998886  567999999999999766   66789999999852 222    


Q ss_pred             CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCch
Q 046017          163 ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS  242 (443)
Q Consensus       163 ~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~  242 (443)
                                                  +|..+  .++|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..|..
T Consensus       226 ----------------------------~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          226 ----------------------------VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             ----------------------------EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ----------------------------ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence                                        22222  2589999999998876  367889999999999999999988999


Q ss_pred             hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCee
Q 046017          243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYL  322 (443)
Q Consensus       243 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L  322 (443)
                      +..+++|++|++++|.+.+ +|..+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+|  +..+++|+.|
T Consensus       274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L  350 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL  350 (597)
T ss_dssp             GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEE
T ss_pred             hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEE
Confidence            9999999999999999865 677778899999999999999999999999999999999999999886  6789999999


Q ss_pred             eCCCCCCC
Q 046017          323 KPFENNSD  330 (443)
Q Consensus       323 ~ls~n~l~  330 (443)
                      ++++|.+.
T Consensus       351 ~l~~N~~~  358 (597)
T 3oja_B          351 TLSHNDWD  358 (597)
T ss_dssp             ECCSSCEE
T ss_pred             EeeCCCCC
Confidence            99999984

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.1e-29  Score=242.58  Aligned_cols=268  Identities=19%  Similarity=0.235  Sum_probs=162.0

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecC
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELK   98 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls   98 (443)
                      ++++++++++. .+.+|..+.  ++|++|++++|.+.+..|..++++++|++|++++|.++.+ |..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLG-LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSC-CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCC-ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            68999999987 567776553  6899999999987766677899999999999999999866 6778777777777766


Q ss_pred             CCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccc
Q 046017           99 NSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS  178 (443)
Q Consensus        99 ~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~  178 (443)
                      +              |.++.+|..+.  ++|++|++++|.                 ++.++                  
T Consensus       111 ~--------------n~l~~l~~~~~--~~L~~L~l~~n~-----------------i~~~~------------------  139 (332)
T 2ft3_A          111 K--------------NHLVEIPPNLP--SSLVELRIHDNR-----------------IRKVP------------------  139 (332)
T ss_dssp             S--------------SCCCSCCSSCC--TTCCEEECCSSC-----------------CCCCC------------------
T ss_pred             C--------------CcCCccCcccc--ccCCEEECCCCc-----------------cCccC------------------
Confidence            5              45556665443  556666665541                 11111                  


Q ss_pred             cccccCCCCCcccCCcccCCcccceeeccccccc--ccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccc
Q 046017          179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKL--ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID  256 (443)
Q Consensus       179 ~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~--~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~  256 (443)
                                   +..+..+++|++|++++|.+.  +..+..+..+ +|++|++++|.+.+ +|..+.  ++|++|++++
T Consensus       140 -------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~  202 (332)
T 2ft3_A          140 -------------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDH  202 (332)
T ss_dssp             -------------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCS
T ss_pred             -------------HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCC
Confidence                         112445555666666655543  2344445444 56666666655433 343332  4566666666


Q ss_pred             ccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcc
Q 046017          257 CKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEY  335 (443)
Q Consensus       257 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~  335 (443)
                      |.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|+++.+|..+..+++|++|++++|+++.++..
T Consensus       203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChh
Confidence            66555444555566666666666666654443 45556666666666666666665566666666666666666555543


Q ss_pred             cccCC--CCCcccccccccccCCCC
Q 046017          336 LRSSP--TSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       336 ~~~~~--~~lp~~L~~L~l~~N~l~  358 (443)
                      .....  .....+|+.|++++|.+.
T Consensus       283 ~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          283 DFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             HccccccccccccccceEeecCccc
Confidence            22110  001234556666666544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1.8e-29  Score=251.20  Aligned_cols=294  Identities=16%  Similarity=0.105  Sum_probs=233.8

Q ss_pred             CCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCC------
Q 046017           28 NCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSS------  101 (443)
Q Consensus        28 ~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~------  101 (443)
                      .+......+..++++++|++|++++|.+.+ +| .++.+++|++|++++|.++.+|  ++.+++|++|++++|.      
T Consensus        27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~  102 (457)
T 3bz5_A           27 AFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDV  102 (457)
T ss_dssp             HTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             hcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeec
Confidence            333334445568889999999999998765 56 6899999999999999999886  8899999999999973      


Q ss_pred             -CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCCCCCC--CCCccccccCc
Q 046017          102 -EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKRFPKI--ASCNKVGITGI  173 (443)
Q Consensus       102 -~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~~~~~--~~l~~L~l~~l  173 (443)
                       .+++|++|++++|.++.+|  ++.+++|++|++++|.+.     .+++|++|++++|..++.++..  .+++.|++.  
T Consensus       103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls--  178 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS--  178 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC--
T ss_pred             CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECC--
Confidence             6799999999999999887  889999999999999775     7889999999998888777543  667777761  


Q ss_pred             ccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEe
Q 046017          174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA  253 (443)
Q Consensus       174 ~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~  253 (443)
                                 .+.++.+|  ++.+++|++|++++|.+.+.   .++.+++|++|++++|.+.+ +|  +..+++|++|+
T Consensus       179 -----------~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          179 -----------FNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             -----------SSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             -----------CCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence                       12334454  67889999999999887764   37889999999999998876 66  78899999999


Q ss_pred             cccccccccCCCCCCCCCCCceEEecCCCCc-----------ccChhccCCCCCCEEEccCCCCC-CCCh--------hh
Q 046017          254 IIDCKIFKRLPNELGNLKCLAALIVKGTAIR-----------EVPESLGYLSSLAKLELSNNNLK-RTPE--------SL  313 (443)
Q Consensus       254 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-----------~lp~~~~~l~~L~~L~ls~n~l~-~lp~--------~l  313 (443)
                      +++|++.+..+   ..+++|+.|++++|+++           .+|  ++.+++|+.|++++|... .+|.        .+
T Consensus       240 l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l  314 (457)
T 3bz5_A          240 CSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL  314 (457)
T ss_dssp             CCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred             eeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEech
Confidence            99999976543   34555555544444443           344  467899999999999743 2221        26


Q ss_pred             hCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc
Q 046017          314 YQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       314 ~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                      ..+++|++|++++|+++.++  +..+     ++|++|++++|.++.+
T Consensus       315 ~~~~~L~~L~L~~N~l~~l~--l~~l-----~~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          315 SQNPKLVYLYLNNTELTELD--VSHN-----TKLKSLSCVNAHIQDF  354 (457)
T ss_dssp             TTCTTCCEEECTTCCCSCCC--CTTC-----TTCSEEECCSSCCCBC
T ss_pred             hhcccCCEEECCCCcccccc--cccC-----CcCcEEECCCCCCCCc
Confidence            77889999999999998884  5554     6899999999998875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.4e-30  Score=246.69  Aligned_cols=175  Identities=20%  Similarity=0.219  Sum_probs=153.2

Q ss_pred             ccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCC-CCCcEecccccccccCCCCCC
Q 046017          190 SLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLK-SLTPLAIIDCKIFKRLPNELG  268 (443)
Q Consensus       190 ~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~l~  268 (443)
                      .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+.
T Consensus       116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~  195 (313)
T 1ogq_A          116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence            3455567778888888888888888899999999999999999999889999999998 999999999999989999998


Q ss_pred             CCCCCceEEecCCCCc-ccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCccc
Q 046017          269 NLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSE  346 (443)
Q Consensus       269 ~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~  346 (443)
                      .++ |++|++++|.++ ..|..+..+++|+.|++++|+++..+..+..+++|++|++++|+++ .+|..+..+     ++
T Consensus       196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~  269 (313)
T 1ogq_A          196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-----KF  269 (313)
T ss_dssp             GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC-----TT
T ss_pred             CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC-----cC
Confidence            887 999999999998 6677889999999999999999977666899999999999999995 889888776     79


Q ss_pred             ccccccccCCCC-cccCChhhhhhHH
Q 046017          347 LRSLNLSVDSGN-SLNLDLNKLSEIV  371 (443)
Q Consensus       347 L~~L~l~~N~l~-~l~~~~~~l~~l~  371 (443)
                      |++|++++|.++ .+|.. .+++.+.
T Consensus       270 L~~L~Ls~N~l~~~ip~~-~~l~~L~  294 (313)
T 1ogq_A          270 LHSLNVSFNNLCGEIPQG-GNLQRFD  294 (313)
T ss_dssp             CCEEECCSSEEEEECCCS-TTGGGSC
T ss_pred             CCEEECcCCcccccCCCC-ccccccC
Confidence            999999999887 55554 5555553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=3.2e-30  Score=245.77  Aligned_cols=242  Identities=22%  Similarity=0.325  Sum_probs=191.4

Q ss_pred             CCCCCccCCCCCc---------cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEe
Q 046017            4 KIPSCNIDGSTGI---------ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRV   74 (443)
Q Consensus         4 ~~~~c~~~g~~~~---------~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l   74 (443)
                      ..++|.|.|+.+.         ..+++++|++++|. ++.+|..+.++++|++|++++|.+. .+|..++.+++|++|++
T Consensus        57 ~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L  134 (328)
T 4fcg_A           57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL  134 (328)
T ss_dssp             CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE
T ss_pred             cccccccCCcchhhhHHHHhcccccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC
Confidence            4577999988764         45899999999998 4588988999999999999999877 89999999999999999


Q ss_pred             ecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccC---------CCCCCEEeccCCCCCCCCCc
Q 046017           75 EGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGK---------STLLSELELKNCSELKLKSL  145 (443)
Q Consensus        75 ~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~---------l~~L~~L~l~~n~~~~l~~L  145 (443)
                      ++|.++.+|..+.++++|++|++++|.             .++.+|..+..         +++|++|++++|        
T Consensus       135 s~n~l~~lp~~l~~l~~L~~L~L~~n~-------------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n--------  193 (328)
T 4fcg_A          135 ARNPLRALPASIASLNRLRELSIRACP-------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWT--------  193 (328)
T ss_dssp             ESCCCCCCCGGGGGCTTCCEEEEEEET-------------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--------
T ss_pred             CCCccccCcHHHhcCcCCCEEECCCCC-------------CccccChhHhhccchhhhccCCCCCEEECcCC--------
Confidence            999999999999888877777776642             24555655433         555555555553        


Q ss_pred             CEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCc
Q 046017          146 RRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALL  225 (443)
Q Consensus       146 ~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L  225 (443)
                               .+                                ..+|..++.+++|++|++++|.+.+ +|..++.+++|
T Consensus       194 ---------~l--------------------------------~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L  231 (328)
T 4fcg_A          194 ---------GI--------------------------------RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL  231 (328)
T ss_dssp             ---------CC--------------------------------CCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred             ---------Cc--------------------------------CcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence                     11                                2445567788888888888877664 66678888888


Q ss_pred             ceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc-ccChhccCCCCCCEEEccCC
Q 046017          226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNN  304 (443)
Q Consensus       226 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n  304 (443)
                      ++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+. .+|..++.+++|+.+++..+
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            88888888888888888888888888888888888888888888888888888887554 78888888888888888877


Q ss_pred             CCCCCC
Q 046017          305 NLKRTP  310 (443)
Q Consensus       305 ~l~~lp  310 (443)
                      .+..++
T Consensus       312 ~~~~l~  317 (328)
T 4fcg_A          312 LQAQLD  317 (328)
T ss_dssp             GSCC--
T ss_pred             HHHHHh
Confidence            665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=4.4e-29  Score=258.88  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=110.6

Q ss_pred             ceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCC
Q 046017           22 CGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNS  100 (443)
Q Consensus        22 ~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~  100 (443)
                      ++.+.++-+ ++.+|..+.  +++++|+|++|.+.+..+.+|.++++|++|++++|.++.+| ..|.++++|++|+|++|
T Consensus        34 ~~~~c~~~~-l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           34 ITYQCMELN-FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             TEEECTTSC-CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCC-cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            445555544 667887553  48999999999987766778999999999999999999887 57999999999999997


Q ss_pred             C----------CCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCC---------CCCCcCEEEccCCC
Q 046017          101 S----------EFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSEL---------KLKSLRRIKMSKCS  154 (443)
Q Consensus       101 ~----------~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~  154 (443)
                      .          ++++|++|++++|.++.+|. .++++++|++|++++|.+.         .+++|++|++++|.
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            3          67999999999999999976 4889999999999999764         67899999999964

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.6e-28  Score=232.95  Aligned_cols=259  Identities=20%  Similarity=0.175  Sum_probs=203.1

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEec
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELEL   97 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l   97 (443)
                      .+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..++.+++|++|++++|.++.+|..+.  ++|++|++
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV  128 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence            4689999999999666556689999999999999999887779999999999999999999998886553  45555555


Q ss_pred             CCCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCCCCCCCCCCCCc
Q 046017           98 KNSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSNLKRFPKIASCN  166 (443)
Q Consensus        98 s~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~l~~~~~~~~l~  166 (443)
                      ++              |.++.++. .+.++++|++|++++|...          .+++|++|++++| .++.+       
T Consensus       129 ~~--------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l-------  186 (330)
T 1xku_A          129 HE--------------NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTI-------  186 (330)
T ss_dssp             CS--------------SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSC-------
T ss_pred             CC--------------CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccC-------
Confidence            54              55555543 2455666666666666542          4566666666663 23333       


Q ss_pred             cccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcC
Q 046017          167 KVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCML  246 (443)
Q Consensus       167 ~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l  246 (443)
                                               |..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+
T Consensus       187 -------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          187 -------------------------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             -------------------------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             -------------------------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence                                     33332  689999999999888888899999999999999999888777789999


Q ss_pred             CCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhcc-------CCCCCCEEEccCCCCCC--C-ChhhhCC
Q 046017          247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLG-------YLSSLAKLELSNNNLKR--T-PESLYQL  316 (443)
Q Consensus       247 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~-------~l~~L~~L~ls~n~l~~--l-p~~l~~l  316 (443)
                      ++|++|++++|.+. .+|..+..+++|++|++++|.++.++....       ..+.++.|++++|.+..  + |..+..+
T Consensus       240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~  318 (330)
T 1xku_A          240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  318 (330)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence            99999999999885 788889999999999999999998765322       24789999999999973  3 4678889


Q ss_pred             CCCCeeeCCCCC
Q 046017          317 SSLKYLKPFENN  328 (443)
Q Consensus       317 ~~L~~L~ls~n~  328 (443)
                      ++++.+++++|+
T Consensus       319 ~~l~~l~L~~N~  330 (330)
T 1xku_A          319 YVRAAVQLGNYK  330 (330)
T ss_dssp             CCGGGEEC----
T ss_pred             cceeEEEecccC
Confidence            999999999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=4.1e-28  Score=231.78  Aligned_cols=269  Identities=18%  Similarity=0.167  Sum_probs=209.4

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEec
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELEL   97 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l   97 (443)
                      .+++++|++++|.+.+..|..|.++++|++|++++|.+.+..|..++.+++|++|++++|.++.+|..+.  +       
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~-------  123 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--S-------  123 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--T-------
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--c-------
Confidence            4689999999999666667789999999999999999888778999999999999999999998886543  3       


Q ss_pred             CCCCCCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccc
Q 046017           98 KNSSEFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRL  176 (443)
Q Consensus        98 s~~~~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l  176 (443)
                             +|++|++++|.++.+|.. +.++++|++|++++|..                 +.                  
T Consensus       124 -------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l-----------------~~------------------  161 (332)
T 2ft3_A          124 -------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL-----------------EN------------------  161 (332)
T ss_dssp             -------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC-----------------BG------------------
T ss_pred             -------cCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc-----------------cc------------------
Confidence                   455555666788888764 77888999998888721                 10                  


Q ss_pred             cccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccc
Q 046017          177 SSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID  256 (443)
Q Consensus       177 ~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~  256 (443)
                                 .+..|..+..+ +|++|++++|.+.+ +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++
T Consensus       162 -----------~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~  226 (332)
T 2ft3_A          162 -----------SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH  226 (332)
T ss_dssp             -----------GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred             -----------CCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence                       01223445566 88899999877654 665543  7899999999888877778888899999999999


Q ss_pred             ccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh-hhhC------CCCCCeeeCCCCCC
Q 046017          257 CKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE-SLYQ------LSSLKYLKPFENNS  329 (443)
Q Consensus       257 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~~------l~~L~~L~ls~n~l  329 (443)
                      |.+.+..+..+..+++|++|++++|+++.+|..+..+++|++|++++|+++.++. .+..      .++|+.|++++|.+
T Consensus       227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             CcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            9987766667888999999999999999999889999999999999999998763 3333      46789999999988


Q ss_pred             C--ccCcccccCCCCCcccccccccccCC
Q 046017          330 D--RIPEYLRSSPTSIPSELRSLNLSVDS  356 (443)
Q Consensus       330 ~--~lp~~~~~~~~~lp~~L~~L~l~~N~  356 (443)
                      .  .+++.....    .++|+.+++++|.
T Consensus       307 ~~~~~~~~~~~~----l~~L~~l~l~~n~  331 (332)
T 2ft3_A          307 PYWEVQPATFRC----VTDRLAIQFGNYK  331 (332)
T ss_dssp             CGGGSCGGGGTT----BCCSTTEEC----
T ss_pred             cccccCcccccc----cchhhhhhccccc
Confidence            6  555433321    2688999998873

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=3.5e-28  Score=231.65  Aligned_cols=238  Identities=23%  Similarity=0.280  Sum_probs=179.8

Q ss_pred             CCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccC
Q 046017           41 VLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELP  120 (443)
Q Consensus        41 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp  120 (443)
                      ..+++++|++++|.+. .+|..++++++|++|++++|.++.+|..+..+++|++|++              ++|.++.+|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L--------------s~n~l~~lp  143 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL--------------ARNPLRALP  143 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEE--------------ESCCCCCCC
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEEC--------------CCCccccCc
Confidence            3578899999998865 7888888899999999999998888877777655555544              457777888


Q ss_pred             ccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcc
Q 046017          121 ESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKS  200 (443)
Q Consensus       121 ~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~  200 (443)
                      ..+.++++|++|++++|                +.++.+|..                 +.      -..++..+..+++
T Consensus       144 ~~l~~l~~L~~L~L~~n----------------~~~~~~p~~-----------------~~------~~~~~~~~~~l~~  184 (328)
T 4fcg_A          144 ASIASLNRLRELSIRAC----------------PELTELPEP-----------------LA------STDASGEHQGLVN  184 (328)
T ss_dssp             GGGGGCTTCCEEEEEEE----------------TTCCCCCSC-----------------SE------EEC-CCCEEESTT
T ss_pred             HHHhcCcCCCEEECCCC----------------CCccccChh-----------------Hh------hccchhhhccCCC
Confidence            88888888888888776                344444321                 00      0012233556888


Q ss_pred             cceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017          201 LRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG  280 (443)
Q Consensus       201 L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  280 (443)
                      |++|++++|.+. .+|..++.+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus       185 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            888998887766 778888888888888888887764 666788888888888888888888888888888888888888


Q ss_pred             CCCc-ccChhccCCCCCCEEEccCCCCC-CCChhhhCCCCCCeeeCCCCCCCccCc
Q 046017          281 TAIR-EVPESLGYLSSLAKLELSNNNLK-RTPESLYQLSSLKYLKPFENNSDRIPE  334 (443)
Q Consensus       281 n~l~-~lp~~~~~l~~L~~L~ls~n~l~-~lp~~l~~l~~L~~L~ls~n~l~~lp~  334 (443)
                      |.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.+++..+.+..++.
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~  318 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ  318 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC---
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhh
Confidence            7554 77878888888888888887665 678888888888888888776665543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.7e-28  Score=235.10  Aligned_cols=265  Identities=19%  Similarity=0.188  Sum_probs=156.0

Q ss_pred             eEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCCC
Q 046017           23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNSS  101 (443)
Q Consensus        23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~~  101 (443)
                      ..+++++. .+.+|..+.  ++|++|++++|.+.+..+..++++++|++|++++|.++.++ ..|.++++|++|++++  
T Consensus        35 ~c~~~~~~-l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~--  109 (353)
T 2z80_A           35 ICKGSSGS-LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY--  109 (353)
T ss_dssp             EEECCSTT-CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS--
T ss_pred             EeeCCCCC-ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC--
Confidence            45666665 556666443  47888888887766544556778888888888888777554 4566655555555544  


Q ss_pred             CCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccc
Q 046017          102 EFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTL  180 (443)
Q Consensus       102 ~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l  180 (443)
                                  |.++.+|.. +.++++|++|++++|.                 ++                       
T Consensus       110 ------------n~l~~~~~~~~~~l~~L~~L~L~~n~-----------------l~-----------------------  137 (353)
T 2z80_A          110 ------------NYLSNLSSSWFKPLSSLTFLNLLGNP-----------------YK-----------------------  137 (353)
T ss_dssp             ------------SCCSSCCHHHHTTCTTCSEEECTTCC-----------------CS-----------------------
T ss_pred             ------------CcCCcCCHhHhCCCccCCEEECCCCC-----------------Cc-----------------------
Confidence                        556666654 5666666666666651                 11                       


Q ss_pred             cccCCCCCcccCC--cccCCcccceeecccccccc-cccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccc
Q 046017          181 RLKNCSSLESLPS--SLCMLKSLRFLETIACKKLE-RLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDC  257 (443)
Q Consensus       181 ~~~~~~~l~~lp~--~~~~l~~L~~L~ls~n~~~~-~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n  257 (443)
                               .+|.  .+..+++|++|++++|+..+ ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus       138 ---------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          138 ---------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             ---------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             ---------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence                     1111  24455566666666653222 23345556666666666666655555556666666666666666


Q ss_pred             cccccCCC-CCCCCCCCceEEecCCCCcccCh----hccCCCCCCEEEccCCCCC-----CCChhhhCCCCCCeeeCCCC
Q 046017          258 KIFKRLPN-ELGNLKCLAALIVKGTAIREVPE----SLGYLSSLAKLELSNNNLK-----RTPESLYQLSSLKYLKPFEN  327 (443)
Q Consensus       258 ~~~~~~~~-~l~~l~~L~~L~l~~n~l~~lp~----~~~~l~~L~~L~ls~n~l~-----~lp~~l~~l~~L~~L~ls~n  327 (443)
                      .+. .+|. .+..+++|++|++++|.++.++.    .....+.++.++++++.+.     .+|..+..+++|++|++++|
T Consensus       209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             CST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             ccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence            552 2222 22335566666666666654331    1223455666666666665     25666677777777777777


Q ss_pred             CCCccCccc-ccCCCCCcccccccccccCCCCc
Q 046017          328 NSDRIPEYL-RSSPTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       328 ~l~~lp~~~-~~~~~~lp~~L~~L~l~~N~l~~  359 (443)
                      +++.+|..+ ..+     ++|++|++++|.+..
T Consensus       288 ~l~~i~~~~~~~l-----~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          288 QLKSVPDGIFDRL-----TSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCCCCTTTTTTC-----TTCCEEECCSSCBCC
T ss_pred             CCCccCHHHHhcC-----CCCCEEEeeCCCccC
Confidence            777777654 333     567777777776544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=3.9e-27  Score=241.38  Aligned_cols=270  Identities=23%  Similarity=0.233  Sum_probs=182.4

Q ss_pred             CCCCccCCCCCc-------cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecC
Q 046017            5 IPSCNIDGSTGI-------ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGA   77 (443)
Q Consensus         5 ~~~c~~~g~~~~-------~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n   77 (443)
                      .++|.|.|..+.       ...++++|+++++. ++.+|..+.  ++|++|++++|.+. .+|.   .+++|++|++++|
T Consensus        19 ~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N   91 (622)
T 3g06_A           19 APAEESRGRAAVVQKMRACLNNGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGN   91 (622)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred             CCcchhccccccCcccccccCCCCcEEEecCCC-cCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCC
Confidence            356777553221       22469999999998 558887665  89999999999865 6776   6789999999999


Q ss_pred             chhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----CCCCcCEEEccCC
Q 046017           78 AIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL----KLKSLRRIKMSKC  153 (443)
Q Consensus        78 ~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~~  153 (443)
                      .++.+|.   .+++|++|++++              |.++.+|.   .+++|++|++++|.+.    .+++|++|++++|
T Consensus        92 ~l~~lp~---~l~~L~~L~Ls~--------------N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N  151 (622)
T 3g06_A           92 QLTSLPV---LPPGLLELSIFS--------------NPLTHLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN  151 (622)
T ss_dssp             CCSCCCC---CCTTCCEEEECS--------------CCCCCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cCCcCCC---CCCCCCEEECcC--------------CcCCCCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCC
Confidence            9988876   455555555554              55555554   3455555555555433    2345555555553


Q ss_pred             CCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCc
Q 046017          154 SNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKC  233 (443)
Q Consensus       154 ~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n  233 (443)
                       .++.+|                                .   .+++|+.|++++|.+.+ +|   ..+++|+.|++++|
T Consensus       152 -~l~~l~--------------------------------~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N  191 (622)
T 3g06_A          152 -QLASLP--------------------------------A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN  191 (622)
T ss_dssp             -CCSCCC--------------------------------C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred             -cCCCcC--------------------------------C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC
Confidence             333222                                2   23467777777765544 44   34577788888877


Q ss_pred             cCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhh
Q 046017          234 SSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESL  313 (443)
Q Consensus       234 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l  313 (443)
                      .+.+ +|..   +++|+.|++++|.+. .+|..   +++|++|++++|+++.+|   ..+++|+.|++++|+++.+|.  
T Consensus       192 ~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--  258 (622)
T 3g06_A          192 QLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--  258 (622)
T ss_dssp             CCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--
T ss_pred             CCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--
Confidence            6553 4432   467788888877764 45542   467888888888887777   455778888888888887776  


Q ss_pred             hCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc
Q 046017          314 YQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       314 ~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                       .+++|++|++++|+|+.+|..+..+     ++|+.|++++|.++..
T Consensus       259 -~~~~L~~L~Ls~N~L~~lp~~l~~l-----~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          259 -LPSGLLSLSVYRNQLTRLPESLIHL-----SSETTVNLEGNPLSER  299 (622)
T ss_dssp             -CCTTCCEEECCSSCCCSCCGGGGGS-----CTTCEEECCSCCCCHH
T ss_pred             -ccccCcEEeCCCCCCCcCCHHHhhc-----cccCEEEecCCCCCCc
Confidence             5677888888888888888777665     6788888888876544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.9e-27  Score=222.35  Aligned_cols=245  Identities=23%  Similarity=0.217  Sum_probs=137.8

Q ss_pred             eEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh---hhhhccCCCCcEEecCC
Q 046017           23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL---SQSLGQLALLSELELKN   99 (443)
Q Consensus        23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l---p~~~~~l~~L~~L~ls~   99 (443)
                      .++.++++ ++.+|..+.  ++|++|++++|.+....+..++++++|++|++++|.++.+   |..+..+++|++|+++ 
T Consensus        11 ~l~c~~~~-l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls-   86 (306)
T 2z66_A           11 EIRCNSKG-LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-   86 (306)
T ss_dssp             EEECCSSC-CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC-
T ss_pred             EEEcCCCC-cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC-
Confidence            45556655 566776443  6899999999886543334478899999999999888744   4555555555555444 


Q ss_pred             CCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccccc
Q 046017          100 SSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSST  179 (443)
Q Consensus       100 ~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~  179 (443)
                                   +|.++.+|..+..+++|++|++++|.                 ++.++.                  
T Consensus        87 -------------~n~i~~l~~~~~~l~~L~~L~l~~n~-----------------l~~~~~------------------  118 (306)
T 2z66_A           87 -------------FNGVITMSSNFLGLEQLEHLDFQHSN-----------------LKQMSE------------------  118 (306)
T ss_dssp             -------------SCSEEEEEEEEETCTTCCEEECTTSE-----------------EESSTT------------------
T ss_pred             -------------CCccccChhhcCCCCCCCEEECCCCc-----------------cccccc------------------
Confidence                         45566677667777777777777651                 111000                  


Q ss_pred             ccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccc
Q 046017          180 LRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI  259 (443)
Q Consensus       180 l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~  259 (443)
                                  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.                     
T Consensus       119 ------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------  165 (306)
T 2z66_A          119 ------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------  165 (306)
T ss_dssp             ------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---------------------
T ss_pred             ------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---------------------
Confidence                        01244555555666555555444444444455555555555444330                     


Q ss_pred             cccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCcc-Cccc
Q 046017          260 FKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRI-PEYL  336 (443)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~l-p~~~  336 (443)
                        .+|..+..+++|++|++++|+++.+ |..+..+++|++|++++|+++.++. .+..+++|++|++++|+++.. |..+
T Consensus       166 --~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          166 --FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             --EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             --cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence              2344445555555555555555543 3445555555555555555555442 455556666666666665433 2222


Q ss_pred             ccCCCCCcccccccccccCCCC
Q 046017          337 RSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       337 ~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      ..    +|++|++|++++|.++
T Consensus       244 ~~----~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          244 QH----FPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CC----CCTTCCEEECTTCCEE
T ss_pred             Hh----hhccCCEEEccCCCee
Confidence            22    3346666666666544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=1.6e-29  Score=252.34  Aligned_cols=310  Identities=22%  Similarity=0.189  Sum_probs=218.8

Q ss_pred             cCCCcceEEecCCCCCC----cCCccccCCCCCcEEecccccccccccccc-CCCC----cccEEEeecCchh-----hh
Q 046017           17 ERPCSCGLRLKNCSSLE----SFPSSLCVLKSLRSLQIIDCKKFERLLDEL-GNLE----TLLVLRVEGAAIR-----EL   82 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~----~L~~L~l~~n~l~-----~l   82 (443)
                      .+++|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+ ..++    +|++|++++|.++     .+
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            46788888888887543    456667778888888888887655333222 2344    6888888888876     56


Q ss_pred             hhhhccCCCCcEEecCCCC---------------CCCCccEEEEeCCCCcc-----cCccccCCCCCCEEeccCCCCC--
Q 046017           83 SQSLGQLALLSELELKNSS---------------EFEYLRVLRVEGAAIRE-----LPESIGKSTLLSELELKNCSEL--  140 (443)
Q Consensus        83 p~~~~~l~~L~~L~ls~~~---------------~l~~L~~L~l~~n~~~~-----lp~~l~~l~~L~~L~l~~n~~~--  140 (443)
                      |..+..+++|++|++++|.               ..++|++|++++|.++.     ++..+..+++|++|++++|.+.  
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            7778888888888888874               13468888888888664     4555666788888888888754  


Q ss_pred             -----------CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccc
Q 046017          141 -----------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIAC  209 (443)
Q Consensus       141 -----------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n  209 (443)
                                 ..++|++|++++|. ++..                           ....++..+..+++|++|++++|
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~---------------------------~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCG-VTSD---------------------------NCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSC-CBTT---------------------------HHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCC-CcHH---------------------------HHHHHHHHHHhCCCccEEeccCC
Confidence                       25588888888752 2110                           11234555677888999999988


Q ss_pred             cccccc-----cccccCCCCcceeeccCccCCCC----CCchhhcCCCCCcEecccccccccCCCCC-----CCCCCCce
Q 046017          210 KKLERL-----PESLGQLALLCELKMIKCSSFES----LPSSLCMLKSLTPLAIIDCKIFKRLPNEL-----GNLKCLAA  275 (443)
Q Consensus       210 ~~~~~~-----p~~l~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~  275 (443)
                      .+....     +..+..+++|++|++++|.+...    ++..+..+++|++|++++|.+....+..+     ...++|++
T Consensus       238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence            765432     22334578899999999876653    56677778899999999988754322222     22368999


Q ss_pred             EEecCCCCcc-----cChhccCCCCCCEEEccCCCCCCC-Chhhh----C-CCCCCeeeCCCCCCC-----ccCcccccC
Q 046017          276 LIVKGTAIRE-----VPESLGYLSSLAKLELSNNNLKRT-PESLY----Q-LSSLKYLKPFENNSD-----RIPEYLRSS  339 (443)
Q Consensus       276 L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~n~l~~l-p~~l~----~-l~~L~~L~ls~n~l~-----~lp~~~~~~  339 (443)
                      |++++|.++.     ++..+..+++|++|++++|+++.. +..+.    . .++|++|++++|+++     .+|..+...
T Consensus       318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  397 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN  397 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence            9999998873     466677788999999999988743 22232    2 678999999999887     677766655


Q ss_pred             CCCCcccccccccccCCCCc
Q 046017          340 PTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       340 ~~~lp~~L~~L~l~~N~l~~  359 (443)
                           ++|++|++++|.++.
T Consensus       398 -----~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          398 -----HSLRELDLSNNCLGD  412 (461)
T ss_dssp             -----CCCCEEECCSSSCCH
T ss_pred             -----CCccEEECCCCCCCH
Confidence                 689999999987664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=229.99  Aligned_cols=253  Identities=22%  Similarity=0.171  Sum_probs=205.7

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhh-hccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS-LGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~   96 (443)
                      .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..++++++|++|++++|.++.+|.. +.++++|++|+
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            35899999999996554455899999999999999998877788899999999999999999988865 77777666666


Q ss_pred             cCCCCCCCCccEEEEeCCCCcccCc--cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcc
Q 046017           97 LKNSSEFEYLRVLRVEGAAIRELPE--SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIK  174 (443)
Q Consensus        97 ls~~~~l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~  174 (443)
                      +++              |.++.+|.  .+..+++|++|++++|                +.++.+               
T Consensus       131 L~~--------------n~l~~l~~~~~~~~l~~L~~L~l~~n----------------~~~~~~---------------  165 (353)
T 2z80_A          131 LLG--------------NPYKTLGETSLFSHLTKLQILRVGNM----------------DTFTKI---------------  165 (353)
T ss_dssp             CTT--------------CCCSSSCSSCSCTTCTTCCEEEEEES----------------SSCCEE---------------
T ss_pred             CCC--------------CCCcccCchhhhccCCCCcEEECCCC----------------cccccc---------------
Confidence            655              66788876  5778888888888776                222221               


Q ss_pred             cccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCch-hhcCCCCCcEe
Q 046017          175 RLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS-LCMLKSLTPLA  253 (443)
Q Consensus       175 ~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~-~~~l~~L~~L~  253 (443)
                                      .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.. +..+++|++|+
T Consensus       166 ----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          166 ----------------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE  228 (353)
T ss_dssp             ----------------CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEE
T ss_pred             ----------------CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEE
Confidence                            1345778999999999999998888999999999999999998864 44443 45689999999


Q ss_pred             cccccccccCCCCC---CCCCCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCCCCChh-hhCCCCCCeeeC
Q 046017          254 IIDCKIFKRLPNEL---GNLKCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLKRTPES-LYQLSSLKYLKP  324 (443)
Q Consensus       254 l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~~lp~~-l~~l~~L~~L~l  324 (443)
                      +++|.+.+..+..+   ...+.++.++++++.++     .+|..+..+++|++|++++|+++.+|.. +..+++|++|++
T Consensus       229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence            99999876544433   34567888888888776     5788899999999999999999999976 489999999999


Q ss_pred             CCCCCCcc
Q 046017          325 FENNSDRI  332 (443)
Q Consensus       325 s~n~l~~l  332 (443)
                      ++|.+..-
T Consensus       309 ~~N~~~~~  316 (353)
T 2z80_A          309 HTNPWDCS  316 (353)
T ss_dssp             CSSCBCCC
T ss_pred             eCCCccCc
Confidence            99998543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.3e-28  Score=230.86  Aligned_cols=259  Identities=13%  Similarity=0.068  Sum_probs=174.4

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCC
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKN   99 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~   99 (443)
                      .++..+++.+.+...+...+..+++|++|++++|.+.+..|..++.+++|++|++++|.++.++. +..+++|++|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            34445555544322223334456677777777777666555667777777777777777764443 44444444444443


Q ss_pred             CCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccccc
Q 046017          100 SSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSST  179 (443)
Q Consensus       100 ~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~  179 (443)
                                    |.++.++.    .++|++|++++|.                 ++.                     
T Consensus        90 --------------n~l~~l~~----~~~L~~L~l~~n~-----------------l~~---------------------  113 (317)
T 3o53_A           90 --------------NYVQELLV----GPSIETLHAANNN-----------------ISR---------------------  113 (317)
T ss_dssp             --------------SEEEEEEE----CTTCCEEECCSSC-----------------CSE---------------------
T ss_pred             --------------CccccccC----CCCcCEEECCCCc-----------------cCC---------------------
Confidence                          44554442    2566666666541                 111                     


Q ss_pred             ccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchh-hcCCCCCcEeccccc
Q 046017          180 LRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSL-CMLKSLTPLAIIDCK  258 (443)
Q Consensus       180 l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~-~~l~~L~~L~l~~n~  258 (443)
                                 ++  ...+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus       114 -----------~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          114 -----------VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             -----------EE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             -----------cC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence                       11  1134678888888887777666677788888888888887776666555 367888888888888


Q ss_pred             ccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC--ccCccc
Q 046017          259 IFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD--RIPEYL  336 (443)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~--~lp~~~  336 (443)
                      +.+. +. ...+++|++|++++|+++.+|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|.+.  .+|..+
T Consensus       181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          181 IYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             CCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             Cccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            7543 33 3347888888888888888887788888888888888888888888888888888888888886  566666


Q ss_pred             ccCCCCCcccccccccccC
Q 046017          337 RSSPTSIPSELRSLNLSVD  355 (443)
Q Consensus       337 ~~~~~~lp~~L~~L~l~~N  355 (443)
                      ..+     ++|+.++++++
T Consensus       259 ~~~-----~~L~~l~l~~~  272 (317)
T 3o53_A          259 SKN-----QRVQTVAKQTV  272 (317)
T ss_dssp             HTC-----HHHHHHHHHHH
T ss_pred             hcc-----ccceEEECCCc
Confidence            554     67888877643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.8e-26  Score=217.72  Aligned_cols=243  Identities=20%  Similarity=0.168  Sum_probs=185.7

Q ss_pred             CCCCCCccCCCCCc----------cCCCcceEEecCCCCCCcCCc-cccCCCCCcEEecccccccc--ccccccCCCCcc
Q 046017            3 PKIPSCNIDGSTGI----------ERPCSCGLRLKNCSSLESFPS-SLCVLKSLRSLQIIDCKKFE--RLLDELGNLETL   69 (443)
Q Consensus         3 ~~~~~c~~~g~~~~----------~~~~L~~L~ls~~~~~~~~p~-~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L   69 (443)
                      |....|.|.++.|.          -.+++++|++++|.+. .+|. .|.++++|++|++++|.+..  ..+..+..+++|
T Consensus         2 P~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A            2 PSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             cCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence            55566888876664          2358999999999854 5554 57899999999999998763  346777789999


Q ss_pred             cEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCc--cccCCCCCCEEeccCCCCCCCCCcCE
Q 046017           70 LVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPE--SIGKSTLLSELELKNCSELKLKSLRR  147 (443)
Q Consensus        70 ~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~l~~n~~~~l~~L~~  147 (443)
                      ++|++++|.++.+|..+..+++|++|++++              |.++.++.  .+..+++|++|++++|.         
T Consensus        81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~--------------n~l~~~~~~~~~~~l~~L~~L~l~~n~---------  137 (306)
T 2z66_A           81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQH--------------SNLKQMSEFSVFLSLRNLIYLDISHTH---------  137 (306)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTT--------------SEEESSTTTTTTTTCTTCCEEECTTSC---------
T ss_pred             CEEECCCCccccChhhcCCCCCCCEEECCC--------------CcccccccchhhhhccCCCEEECCCCc---------
Confidence            999999999999988888777777666665              66676654  57788888888888761         


Q ss_pred             EEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccc-cccccccCCCCcc
Q 046017          148 IKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLE-RLPESLGQLALLC  226 (443)
Q Consensus       148 L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~-~~p~~l~~l~~L~  226 (443)
                              +.                               ...|..+..+++|++|++++|.+.+ .+|..+..+++|+
T Consensus       138 --------l~-------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A          138 --------TR-------------------------------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             --------CE-------------------------------ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             --------CC-------------------------------ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence                    11                               1233457788999999999988876 5788888999999


Q ss_pred             eeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc-cChhccCC-CCCCEEEccCC
Q 046017          227 ELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE-VPESLGYL-SSLAKLELSNN  304 (443)
Q Consensus       227 ~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~~~l-~~L~~L~ls~n  304 (443)
                      +|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++. .|..+..+ ++|++|++++|
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            99999988877777778888888888888888766555566777777788887777774 34556666 37777777777


Q ss_pred             CCCC
Q 046017          305 NLKR  308 (443)
Q Consensus       305 ~l~~  308 (443)
                      .++.
T Consensus       259 ~~~~  262 (306)
T 2z66_A          259 DFAC  262 (306)
T ss_dssp             CEEC
T ss_pred             Ceec
Confidence            7763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=3.7e-28  Score=229.98  Aligned_cols=134  Identities=19%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             cccCCcccceeeccccccccc--ccccc--cCCCCcceeeccCccCCC--CCC-chhhcCCCCCcEecccccccccCC-C
Q 046017          194 SLCMLKSLRFLETIACKKLER--LPESL--GQLALLCELKMIKCSSFE--SLP-SSLCMLKSLTPLAIIDCKIFKRLP-N  265 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~--~p~~l--~~l~~L~~L~ls~n~~~~--~~p-~~~~~l~~L~~L~l~~n~~~~~~~-~  265 (443)
                      .++.+++|++|++++|.+.+.  +|..+  ..+++|++|++++|.+.+  .++ ..+..+++|++|++++|.+.+..| .
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            345555566666665554443  22222  455556666665555432  111 122344555555555555544332 2


Q ss_pred             CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC
Q 046017          266 ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       266 ~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~  330 (443)
                      .+..+++|++|++++|+++.+|..+.  ++|++|++++|+++++|. +..+++|++|++++|+++
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence            33344555555555555555554443  455555555555555544 455555555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=9.2e-26  Score=210.68  Aligned_cols=221  Identities=18%  Similarity=0.239  Sum_probs=118.1

Q ss_pred             ceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecCCC
Q 046017           22 CGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELKNS  100 (443)
Q Consensus        22 ~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~~  100 (443)
                      ++++.+++. ++.+|..+  .++|++|++++|.+.+..+..++.+++|++|++++|.++.+ |..|..+++|++|++++ 
T Consensus        14 ~~~~c~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-   89 (285)
T 1ozn_A           14 VTTSCPQQG-LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD-   89 (285)
T ss_dssp             CEEECCSSC-CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-
T ss_pred             eEEEcCcCC-cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC-
Confidence            678888776 56677543  46899999999887766667788888888888888888755 45566555555555544 


Q ss_pred             CCCCCccEEEEeCCC-Cccc-CccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccc
Q 046017          101 SEFEYLRVLRVEGAA-IREL-PESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS  178 (443)
Q Consensus       101 ~~l~~L~~L~l~~n~-~~~l-p~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~  178 (443)
                                   |. ++.+ |..+..+++|++|++++|.                 ++.+                   
T Consensus        90 -------------n~~l~~~~~~~~~~l~~L~~L~l~~n~-----------------l~~~-------------------  120 (285)
T 1ozn_A           90 -------------NAQLRSVDPATFHGLGRLHTLHLDRCG-----------------LQEL-------------------  120 (285)
T ss_dssp             -------------CTTCCCCCTTTTTTCTTCCEEECTTSC-----------------CCCC-------------------
T ss_pred             -------------CCCccccCHHHhcCCcCCCEEECCCCc-----------------CCEE-------------------
Confidence                         43 4444 4445555555555555541                 1110                   


Q ss_pred             cccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccc
Q 046017          179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCK  258 (443)
Q Consensus       179 ~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~  258 (443)
                                  .|..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus       121 ------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          121 ------------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             ------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ------------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence                        12234445555555555544443333334444555555555544433333334444444444444444


Q ss_pred             ccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCC
Q 046017          259 IFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLK  307 (443)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~  307 (443)
                      +.+..|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            444334444444444444444444443332 2334444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=7.5e-25  Score=217.30  Aligned_cols=243  Identities=22%  Similarity=0.289  Sum_probs=168.4

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecC
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELK   98 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls   98 (443)
                      ..+.++.++.. +..+|..+.  +++++|+|++|.+.+..+..|.++++|++|++++|.++.++ ..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKN-LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCC-CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCC-cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            45677777765 667777554  68899999999887777788899999999999999888665 566666655555555


Q ss_pred             CCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccc
Q 046017           99 NSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS  177 (443)
Q Consensus        99 ~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~  177 (443)
                      +              |.++.+|. .+..+++|++|++++|.+                 +.++                 
T Consensus       121 ~--------------n~l~~~~~~~~~~l~~L~~L~L~~N~i-----------------~~~~-----------------  152 (440)
T 3zyj_A          121 D--------------NRLTTIPNGAFVYLSKLKELWLRNNPI-----------------ESIP-----------------  152 (440)
T ss_dssp             S--------------SCCSSCCTTTSCSCSSCCEEECCSCCC-----------------CEEC-----------------
T ss_pred             C--------------CcCCeeCHhHhhccccCceeeCCCCcc-----------------cccC-----------------
Confidence            4              66777765 467788888888877621                 1111                 


Q ss_pred             ccccccCCCCCcccCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccc
Q 046017          178 STLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID  256 (443)
Q Consensus       178 ~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~  256 (443)
                                    +..+..+++|++|++++|+..+.++. .+..+++|++|++++|.+. .+| .+..+++|++|++++
T Consensus       153 --------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          153 --------------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG  216 (440)
T ss_dssp             --------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT
T ss_pred             --------------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC
Confidence                          12355666777777777655555543 5666777777777776554 344 356677777777777


Q ss_pred             ccccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCC
Q 046017          257 CKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       257 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l  329 (443)
                      |.+.+..|..+..+++|++|++++|+++.+ +..+..+++|+.|+|++|+++.+| ..+..+++|+.|++++|.+
T Consensus       217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            777666666777777777777777777755 345666777777777777777665 3456677777777777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=5.5e-25  Score=219.02  Aligned_cols=243  Identities=24%  Similarity=0.281  Sum_probs=151.7

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecC
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELK   98 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls   98 (443)
                      ..+.++.++.. +..+|..+.  +++++|+|++|.+.+..|..|+++++|++|++++|.++.++ ..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRG-LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCC-cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            34567777655 556776443  57888888888877777778888888888888888887655 556666555555554


Q ss_pred             CCCCCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccc
Q 046017           99 NSSEFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS  177 (443)
Q Consensus        99 ~~~~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~  177 (443)
                      +              |.++.+|.. +..+++|++|++++|.+                 +.++                 
T Consensus       132 ~--------------n~l~~~~~~~~~~l~~L~~L~L~~N~l-----------------~~~~-----------------  163 (452)
T 3zyi_A          132 D--------------NWLTVIPSGAFEYLSKLRELWLRNNPI-----------------ESIP-----------------  163 (452)
T ss_dssp             S--------------SCCSBCCTTTSSSCTTCCEEECCSCCC-----------------CEEC-----------------
T ss_pred             C--------------CcCCccChhhhcccCCCCEEECCCCCc-----------------ceeC-----------------
Confidence            4              566666554 56677777777777621                 1111                 


Q ss_pred             ccccccCCCCCcccCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccc
Q 046017          178 STLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID  256 (443)
Q Consensus       178 ~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~  256 (443)
                                    +..+..+++|++|++++|+..+.++. .+..+++|++|++++|.+.+ +| .+..+++|++|++++
T Consensus       164 --------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          164 --------------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSG  227 (452)
T ss_dssp             --------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTT
T ss_pred             --------------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcC
Confidence                          12345556666666666555554443 35566666666666665443 33 355566666666666


Q ss_pred             ccccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCC
Q 046017          257 CKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       257 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l  329 (443)
                      |.+.+..|..+..+++|++|++++|+++.+ +..+..+++|+.|++++|+++.+| ..+..+++|++|++++|.+
T Consensus       228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            666555555666666666666666666644 344566666666666666666655 3345566666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=3.8e-25  Score=220.17  Aligned_cols=227  Identities=21%  Similarity=0.234  Sum_probs=187.1

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~   96 (443)
                      .+++++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++.+|. .|..+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            3589999999999777778889999999999999999888778899999999999999999998874 466666555555


Q ss_pred             cCCCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccc
Q 046017           97 LKNSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKR  175 (443)
Q Consensus        97 ls~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~  175 (443)
                      ++              +|.++.+|. .+.++++|++|++++|                +.++.++.              
T Consensus       154 L~--------------~N~l~~~~~~~~~~l~~L~~L~l~~~----------------~~l~~i~~--------------  189 (452)
T 3zyi_A          154 LR--------------NNPIESIPSYAFNRVPSLMRLDLGEL----------------KKLEYISE--------------  189 (452)
T ss_dssp             CC--------------SCCCCEECTTTTTTCTTCCEEECCCC----------------TTCCEECT--------------
T ss_pred             CC--------------CCCcceeCHhHHhcCCcccEEeCCCC----------------CCccccCh--------------
Confidence            55              467777765 4677888888887775                33332221              


Q ss_pred             ccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecc
Q 046017          176 LSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAII  255 (443)
Q Consensus       176 l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~  255 (443)
                                       ..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       190 -----------------~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  250 (452)
T 3zyi_A          190 -----------------GAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM  250 (452)
T ss_dssp             -----------------TTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT
T ss_pred             -----------------hhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeC
Confidence                             246788899999999987664 44 57889999999999999888888899999999999999


Q ss_pred             cccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCC
Q 046017          256 DCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLK  307 (443)
Q Consensus       256 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~  307 (443)
                      +|++.+..+..+..+++|++|++++|+++.+|. .+..+++|+.|++++|.+.
T Consensus       251 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            999988888889999999999999999998775 4577899999999999876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2e-26  Score=218.62  Aligned_cols=253  Identities=16%  Similarity=0.087  Sum_probs=200.1

Q ss_pred             CCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc
Q 046017           44 SLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES  122 (443)
Q Consensus        44 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~  122 (443)
                      .++..+++.+.+...+...+..+++|++|++++|.++.++ ..|..+++|++|++++              |.++.++. 
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~--------------n~l~~~~~-   75 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS--------------NVLYETLD-   75 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT--------------SCCEEEEE-
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC--------------CcCCcchh-
Confidence            4566777777665555555667789999999999998665 6777777666666665              55665554 


Q ss_pred             ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccc
Q 046017          123 IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLR  202 (443)
Q Consensus       123 l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~  202 (443)
                      +..+++|++|++++|.                 +                                ..    +...++|+
T Consensus        76 ~~~l~~L~~L~Ls~n~-----------------l--------------------------------~~----l~~~~~L~  102 (317)
T 3o53_A           76 LESLSTLRTLDLNNNY-----------------V--------------------------------QE----LLVGPSIE  102 (317)
T ss_dssp             ETTCTTCCEEECCSSE-----------------E--------------------------------EE----EEECTTCC
T ss_pred             hhhcCCCCEEECcCCc-----------------c--------------------------------cc----ccCCCCcC
Confidence            7788888888888861                 1                                11    12337899


Q ss_pred             eeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC-CCCCCCceEEecCC
Q 046017          203 FLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL-GNLKCLAALIVKGT  281 (443)
Q Consensus       203 ~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n  281 (443)
                      +|++++|.+.+..+.   .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus       103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            999999888765543   36889999999999888777788999999999999999977666655 47899999999999


Q ss_pred             CCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC--c
Q 046017          282 AIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN--S  359 (443)
Q Consensus       282 ~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~--~  359 (443)
                      .++.++.. ..+++|++|++++|+++.+|..+..+++|++|++++|+++.+|..+..+     ++|++|++++|.+.  .
T Consensus       180 ~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l-----~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          180 FIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS-----QNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             CCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC-----TTCCEEECTTCCCBHHH
T ss_pred             cCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcC-----CCCCEEEccCCCccCcC
Confidence            99988654 4589999999999999999988999999999999999999999887655     79999999999887  4


Q ss_pred             ccCChhhhhhHHHh
Q 046017          360 LNLDLNKLSEIVKE  373 (443)
Q Consensus       360 l~~~~~~l~~l~~~  373 (443)
                      ++..+..+..+...
T Consensus       254 ~~~~~~~~~~L~~l  267 (317)
T 3o53_A          254 LRDFFSKNQRVQTV  267 (317)
T ss_dssp             HHHHHHTCHHHHHH
T ss_pred             HHHHHhccccceEE
Confidence            45555555555433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=4.6e-26  Score=228.47  Aligned_cols=234  Identities=13%  Similarity=0.092  Sum_probs=172.5

Q ss_pred             CCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc
Q 046017           43 KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES  122 (443)
Q Consensus        43 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~  122 (443)
                      ++|++|+|++|.+.+..|..|+.+++|++|++++|.++..++ +..+++|++|+++              +|.++.+|. 
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls--------------~N~l~~l~~-   97 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN--------------NNYVQELLV-   97 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECC--------------SSEEEEEEE-
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEec--------------CCcCCCCCC-
Confidence            378888888887776666778888888888888887765443 5555444444444              455555553 


Q ss_pred             ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccc
Q 046017          123 IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLR  202 (443)
Q Consensus       123 l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~  202 (443)
                         .++|++|++++|.                 +..                                ++.  ..+++|+
T Consensus        98 ---~~~L~~L~L~~N~-----------------l~~--------------------------------~~~--~~l~~L~  123 (487)
T 3oja_A           98 ---GPSIETLHAANNN-----------------ISR--------------------------------VSC--SRGQGKK  123 (487)
T ss_dssp             ---CTTCCEEECCSSC-----------------CCC--------------------------------EEE--CCCSSCE
T ss_pred             ---CCCcCEEECcCCc-----------------CCC--------------------------------CCc--cccCCCC
Confidence               2566666666651                 111                                111  1346788


Q ss_pred             eeecccccccccccccccCCCCcceeeccCccCCCCCCchhh-cCCCCCcEecccccccccCCCCCCCCCCCceEEecCC
Q 046017          203 FLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLC-MLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT  281 (443)
Q Consensus       203 ~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  281 (443)
                      +|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+. +. ...+++|++|++++|
T Consensus       124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN  201 (487)
T ss_dssp             EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS
T ss_pred             EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCC
Confidence            888888888887777888888899999998888877777775 688899999999888654 32 345888999999999


Q ss_pred             CCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC--ccCcccccCCCCCcccccccccc
Q 046017          282 AIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD--RIPEYLRSSPTSIPSELRSLNLS  353 (443)
Q Consensus       282 ~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~--~lp~~~~~~~~~lp~~L~~L~l~  353 (443)
                      .++.+|+.+..+++|+.|++++|.++++|..+..+++|+.|++++|.+.  .+|..+..+     +.|+.++++
T Consensus       202 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l-----~~L~~l~~~  270 (487)
T 3oja_A          202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-----QRVQTVAKQ  270 (487)
T ss_dssp             CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC-----HHHHHHHHH
T ss_pred             CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC-----CCCcEEecc
Confidence            9998888888889999999999999988888888899999999998886  666666554     577777775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.4e-27  Score=225.99  Aligned_cols=253  Identities=20%  Similarity=0.193  Sum_probs=176.9

Q ss_pred             ccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchh--hhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCC
Q 046017           39 LCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR--ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAI  116 (443)
Q Consensus        39 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~  116 (443)
                      ++..++|++|++++|.+  .+|..+...  |++|++++|.++  .+|..+.. ..++      ...+++|++|++++|.+
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~-~~~~------~~~l~~L~~L~L~~n~l  107 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILF-GALR------VLGISGLQELTLENLEV  107 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHH-HHHH------HHTTSCCCEEEEEEEBC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHH-HHHH------hcCcCCccEEEccCCcc
Confidence            34556677777777665  556554433  666777776664  34433320 0000      00134555556666776


Q ss_pred             c-ccCccc--cCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCC
Q 046017          117 R-ELPESI--GKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPS  193 (443)
Q Consensus       117 ~-~lp~~l--~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~  193 (443)
                      + .+|..+  ..+++|++|++++|                 .++                                .+|.
T Consensus       108 ~~~~~~~~~~~~l~~L~~L~Ls~N-----------------~l~--------------------------------~~~~  138 (312)
T 1wwl_A          108 TGTAPPPLLEATGPDLNILNLRNV-----------------SWA--------------------------------TRDA  138 (312)
T ss_dssp             BSCCCCCSSSCCSCCCSEEEEESC-----------------BCS--------------------------------SSSS
T ss_pred             cchhHHHHHHhcCCCccEEEccCC-----------------CCc--------------------------------chhH
Confidence            5 567765  67777888777776                 111                                1133


Q ss_pred             cccCC-----cccceeecccccccccccccccCCCCcceeeccCccCCCC--CCchh--hcCCCCCcEecccccccc--c
Q 046017          194 SLCML-----KSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES--LPSSL--CMLKSLTPLAIIDCKIFK--R  262 (443)
Q Consensus       194 ~~~~l-----~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~--~p~~~--~~l~~L~~L~l~~n~~~~--~  262 (443)
                      .++.+     ++|++|++++|.+.+..|..++.+++|++|++++|.+.+.  ++..+  ..+++|++|++++|++.+  .
T Consensus       139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  218 (312)
T 1wwl_A          139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG  218 (312)
T ss_dssp             HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred             HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence            34444     7899999999888887778899999999999999887664  23344  788999999999998852  2


Q ss_pred             CC-CCCCCCCCCceEEecCCCCcccC--hhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccC
Q 046017          263 LP-NELGNLKCLAALIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSS  339 (443)
Q Consensus       263 ~~-~~l~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~  339 (443)
                      ++ ..+..+++|++|++++|+++..+  ..+..+++|++|++++|+++.+|..+.  ++|++|++++|+++.+|. +..+
T Consensus       219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l  295 (312)
T 1wwl_A          219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDEL  295 (312)
T ss_dssp             HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTS
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhC
Confidence            22 23356789999999999998654  445668899999999999999987666  889999999999988877 5554


Q ss_pred             CCCCcccccccccccCCCCc
Q 046017          340 PTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       340 ~~~lp~~L~~L~l~~N~l~~  359 (443)
                           ++|++|++++|.++.
T Consensus       296 -----~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          296 -----PQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -----CEEEEEECTTCTTTC
T ss_pred             -----CCCCEEeccCCCCCC
Confidence                 689999999997764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4.5e-24  Score=218.74  Aligned_cols=248  Identities=24%  Similarity=0.230  Sum_probs=196.3

Q ss_pred             CCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc
Q 046017           43 KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES  122 (443)
Q Consensus        43 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~  122 (443)
                      .++++|++++|.+. .+|..+.  ++|++|++++|.++.+|.   .+              ++|++|++++|.++.+|. 
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l--------------~~L~~L~Ls~N~l~~lp~-   98 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LP--------------PELRTLEVSGNQLTSLPV-   98 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CC--------------TTCCEEEECSCCCSCCCC-
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cC--------------CCCCEEEcCCCcCCcCCC-
Confidence            36899999988754 7777665  789999999998887775   22              466666777788888887 


Q ss_pred             ccCCCCCCEEeccCCCCC----CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCC
Q 046017          123 IGKSTLLSELELKNCSEL----KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCML  198 (443)
Q Consensus       123 l~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l  198 (443)
                        .+++|++|++++|.+.    .+++|++|++++| .++.                                +|.   .+
T Consensus        99 --~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N-~l~~--------------------------------lp~---~l  140 (622)
T 3g06_A           99 --LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLTS--------------------------------LPV---LP  140 (622)
T ss_dssp             --CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSS-CCSC--------------------------------CCC---CC
T ss_pred             --CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCC-CCCc--------------------------------CCC---CC
Confidence              6789999999998655    4567777777774 2333                                333   24


Q ss_pred             cccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEe
Q 046017          199 KSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIV  278 (443)
Q Consensus       199 ~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  278 (443)
                      ++|++|++++|.+.+ +|.   .+++|+.|++++|.+.+ +|   ..+++|+.|++++|.+.+ +|..   +++|+.|++
T Consensus       141 ~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L  208 (622)
T 3g06_A          141 PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWA  208 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEEC
Confidence            789999999987654 554   35789999999987765 66   457899999999999854 5553   478999999


Q ss_pred             cCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017          279 KGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       279 ~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      ++|.++.+|..   +++|+.|++++|+++.+|   ..+++|++|++++|+|+.+|.        .+++|++|++++|.++
T Consensus       209 ~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          209 YNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCC
T ss_pred             cCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCCCC
Confidence            99999998863   589999999999999998   467899999999999999998        3379999999999999


Q ss_pred             cccCChhhhhhHHHhcc
Q 046017          359 SLNLDLNKLSEIVKEGW  375 (443)
Q Consensus       359 ~l~~~~~~l~~l~~~~~  375 (443)
                      .+|..+.+++.+...+.
T Consensus       275 ~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          275 RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             SCCGGGGGSCTTCEEEC
T ss_pred             cCCHHHhhccccCEEEe
Confidence            99887776666643333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.93  E-value=2.7e-27  Score=236.24  Aligned_cols=313  Identities=19%  Similarity=0.142  Sum_probs=197.5

Q ss_pred             CCCcceEEecCCCCCCcCC-ccccCCCCCcEEecccccccc----ccccccCCCCcccEEEeecCchhh-hh-hhhccCC
Q 046017           18 RPCSCGLRLKNCSSLESFP-SSLCVLKSLRSLQIIDCKKFE----RLLDELGNLETLLVLRVEGAAIRE-LS-QSLGQLA   90 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p-~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~-lp-~~~~~l~   90 (443)
                      .+++++|+++++.+..... ..+..+++|++|++++|.+.+    .++..+..+++|++|++++|.++. .+ ..+..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            4689999999998544322 337789999999999998764    467778889999999999999874 23 2333444


Q ss_pred             ----CCcEEecCCCC--------------CCCCccEEEEeCCCCccc-----Ccc-ccCCCCCCEEeccCCCCC------
Q 046017           91 ----LLSELELKNSS--------------EFEYLRVLRVEGAAIREL-----PES-IGKSTLLSELELKNCSEL------  140 (443)
Q Consensus        91 ----~L~~L~ls~~~--------------~l~~L~~L~l~~n~~~~l-----p~~-l~~l~~L~~L~l~~n~~~------  140 (443)
                          +|++|++++|.              .+++|++|++++|.++..     ... ....++|++|++++|.+.      
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                57777777652              334555555555554321     111 112334555555555433      


Q ss_pred             ------CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCccc-CCcccceeecccccccc
Q 046017          141 ------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLC-MLKSLRFLETIACKKLE  213 (443)
Q Consensus       141 ------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~-~l~~L~~L~ls~n~~~~  213 (443)
                            .+++|++|++++|.                  +...          ....+...+. ..++|++|++++|.+..
T Consensus       162 l~~~l~~~~~L~~L~L~~n~------------------i~~~----------~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNND------------------INEA----------GVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSB------------------CHHH----------HHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHHhhCCCCCEEECcCCC------------------cchH----------HHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence                  23455555555431                  1100          0001111111 34588888888887765


Q ss_pred             c----ccccccCCCCcceeeccCccCCCCC-----CchhhcCCCCCcEeccccccccc----CCCCCCCCCCCceEEecC
Q 046017          214 R----LPESLGQLALLCELKMIKCSSFESL-----PSSLCMLKSLTPLAIIDCKIFKR----LPNELGNLKCLAALIVKG  280 (443)
Q Consensus       214 ~----~p~~l~~l~~L~~L~ls~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~  280 (443)
                      .    ++..+..+++|++|++++|.+....     +..+..+++|++|++++|.+...    ++..+..+++|++|++++
T Consensus       214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence            3    5667777888889998888764422     11222478889999988877543    455666788899999998


Q ss_pred             CCCcc-----cChhcc-CCCCCCEEEccCCCCCC-----CChhhhCCCCCCeeeCCCCCCCcc-CcccccCCCCCccccc
Q 046017          281 TAIRE-----VPESLG-YLSSLAKLELSNNNLKR-----TPESLYQLSSLKYLKPFENNSDRI-PEYLRSSPTSIPSELR  348 (443)
Q Consensus       281 n~l~~-----lp~~~~-~l~~L~~L~ls~n~l~~-----lp~~l~~l~~L~~L~ls~n~l~~l-p~~~~~~~~~lp~~L~  348 (443)
                      |.++.     +...+. ..++|++|++++|.++.     ++..+..+++|++|++++|+++.. +..+........++|+
T Consensus       294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~  373 (461)
T 1z7x_W          294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR  373 (461)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceE
Confidence            88862     222222 23688999999998884     456677888999999999988543 2222211000125889


Q ss_pred             ccccccCCCC
Q 046017          349 SLNLSVDSGN  358 (443)
Q Consensus       349 ~L~l~~N~l~  358 (443)
                      +|++++|.++
T Consensus       374 ~L~L~~n~i~  383 (461)
T 1z7x_W          374 VLWLADCDVS  383 (461)
T ss_dssp             EEECTTSCCC
T ss_pred             EEECCCCCCC
Confidence            9999988776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=5.6e-24  Score=211.00  Aligned_cols=227  Identities=21%  Similarity=0.242  Sum_probs=185.8

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE   96 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~   96 (443)
                      .++++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|.++.+|. .|..+++|++|+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            4689999999999766667889999999999999999877777889999999999999999998875 576666666665


Q ss_pred             cCCCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccc
Q 046017           97 LKNSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKR  175 (443)
Q Consensus        97 ls~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~  175 (443)
                      ++              +|.++.+|. .+.++++|++|++++|                +.+..++.              
T Consensus       143 L~--------------~N~i~~~~~~~~~~l~~L~~L~l~~~----------------~~l~~i~~--------------  178 (440)
T 3zyj_A          143 LR--------------NNPIESIPSYAFNRIPSLRRLDLGEL----------------KRLSYISE--------------  178 (440)
T ss_dssp             CC--------------SCCCCEECTTTTTTCTTCCEEECCCC----------------TTCCEECT--------------
T ss_pred             CC--------------CCcccccCHHHhhhCcccCEeCCCCC----------------CCcceeCc--------------
Confidence            55              466777765 4677888888887775                33322221              


Q ss_pred             ccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecc
Q 046017          176 LSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAII  255 (443)
Q Consensus       176 l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~  255 (443)
                                       ..+..+++|++|++++|.+. .+| .+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       179 -----------------~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  239 (440)
T 3zyj_A          179 -----------------GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI  239 (440)
T ss_dssp             -----------------TTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             -----------------chhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence                             24678889999999997665 455 47888999999999998888888889999999999999


Q ss_pred             cccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCC
Q 046017          256 DCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLK  307 (443)
Q Consensus       256 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~  307 (443)
                      +|++.+..+..+..+++|++|++++|+++.+|. .+..+++|+.|++++|.+.
T Consensus       240 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            999988878889999999999999999997765 4577899999999998876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=5.2e-25  Score=205.55  Aligned_cols=206  Identities=17%  Similarity=0.133  Sum_probs=164.1

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCc-hhhh-hhhhccCCCCcE
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAA-IREL-SQSLGQLALLSE   94 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~l-p~~~~~l~~L~~   94 (443)
                      ..+++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..++.+++|++|++++|. ++.+ |..+..+++|++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            35689999999999666556779999999999999999877778899999999999999997 8776 567777766666


Q ss_pred             EecCCCCCCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCc
Q 046017           95 LELKNSSEFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGI  173 (443)
Q Consensus        95 L~ls~~~~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l  173 (443)
                      |++++              |.++.+ |..+.++++|++|++++|.                 ++.++             
T Consensus       110 L~l~~--------------n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------l~~~~-------------  145 (285)
T 1ozn_A          110 LHLDR--------------CGLQELGPGLFRGLAALQYLYLQDNA-----------------LQALP-------------  145 (285)
T ss_dssp             EECTT--------------SCCCCCCTTTTTTCTTCCEEECCSSC-----------------CCCCC-------------
T ss_pred             EECCC--------------CcCCEECHhHhhCCcCCCEEECCCCc-----------------ccccC-------------
Confidence            66655              666666 5557778888888888862                 22211             


Q ss_pred             ccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEe
Q 046017          174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA  253 (443)
Q Consensus       174 ~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~  253 (443)
                                        +..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus       146 ------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  207 (285)
T 1ozn_A          146 ------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (285)
T ss_dssp             ------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ------------------HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence                              13366788899999998877765556688889999999999888887788888899999999


Q ss_pred             cccccccccCCCCCCCCCCCceEEecCCCCc
Q 046017          254 IIDCKIFKRLPNELGNLKCLAALIVKGTAIR  284 (443)
Q Consensus       254 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~  284 (443)
                      +++|.+.+..+..+..+++|++|++++|.+.
T Consensus       208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          208 LFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            9999887655556888899999999999776

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=7.8e-24  Score=195.98  Aligned_cols=77  Identities=16%  Similarity=0.181  Sum_probs=60.7

Q ss_pred             CCCCccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh
Q 046017            5 IPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ   84 (443)
Q Consensus         5 ~~~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~   84 (443)
                      .++|.|.|..|......+.++++++. ++.+|..+.  +++++|++++|.+.+..+..|+.+++|++|++++|.++.+|.
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~   78 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA   78 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence            48999999999766789999999988 556776554  678999999988766555678888888888888877765553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.1e-25  Score=223.68  Aligned_cols=236  Identities=13%  Similarity=0.110  Sum_probs=193.5

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      .+++|++|++++|.+.+..|..|..+++|++|+|++|.+.+..|  ++.+++|++|++++|.++.+|..           
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----------   98 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----------   98 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----------
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----------
Confidence            34589999999999777777889999999999999999877665  89999999999999999877632           


Q ss_pred             cCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccc
Q 046017           97 LKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRL  176 (443)
Q Consensus        97 ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l  176 (443)
                             ++|++|++++|.++.++..  .+++|++|++++|.                 ++                   
T Consensus        99 -------~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~-----------------l~-------------------  133 (487)
T 3oja_A           99 -------PSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-----------------IT-------------------  133 (487)
T ss_dssp             -------TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSC-----------------CC-------------------
T ss_pred             -------CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCC-----------------CC-------------------
Confidence                   3555555566777776642  46777777777761                 11                   


Q ss_pred             cccccccCCCCCcccCCcccCCcccceeeccccccccccccccc-CCCCcceeeccCccCCCCCCchhhcCCCCCcEecc
Q 046017          177 SSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLG-QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAII  255 (443)
Q Consensus       177 ~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~  255 (443)
                                  +..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+. | ....+++|++|+++
T Consensus       134 ------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls  199 (487)
T 3oja_A          134 ------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLS  199 (487)
T ss_dssp             ------------SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECC
T ss_pred             ------------CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECC
Confidence                        12244577889999999999999888887776 789999999999987765 3 23468999999999


Q ss_pred             cccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCC--CCChhhhCCCCCCeeeCC
Q 046017          256 DCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLK--RTPESLYQLSSLKYLKPF  325 (443)
Q Consensus       256 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~--~lp~~l~~l~~L~~L~ls  325 (443)
                      +|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.  .+|..+..++.|+.++++
T Consensus       200 ~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          200 SNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             SSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            999965 555688999999999999999999999999999999999999998  677888889888888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=2.5e-25  Score=229.05  Aligned_cols=320  Identities=14%  Similarity=0.035  Sum_probs=205.2

Q ss_pred             cceEEecCCCCCC--cCCccccCCCCCcEEeccccccccc----cccccCCCCcccEEEeecCchh-----hhhhhhccC
Q 046017           21 SCGLRLKNCSSLE--SFPSSLCVLKSLRSLQIIDCKKFER----LLDELGNLETLLVLRVEGAAIR-----ELSQSLGQL   89 (443)
Q Consensus        21 L~~L~ls~~~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l   89 (443)
                      |++|++++|....  .++.....+++|++|++++|.+.+.    ++.....+++|++|++++|.++     .++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            8888888875211  2223334678888888888876543    4444556778888888887764     556666778


Q ss_pred             CCCcEEecCCCC---------CCCCccEEEEeCCC-C---cccCccccCCCCCCEEeccCCCCC-------CCCCcCEEE
Q 046017           90 ALLSELELKNSS---------EFEYLRVLRVEGAA-I---RELPESIGKSTLLSELELKNCSEL-------KLKSLRRIK  149 (443)
Q Consensus        90 ~~L~~L~ls~~~---------~l~~L~~L~l~~n~-~---~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~  149 (443)
                      ++|++|++++|.         .+++|++|+++.+. .   ...+..+..+++|+.|+++++...       .+++|++|+
T Consensus       220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred             CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence            888888888764         45778888887543 1   233445667778888887765322       567788888


Q ss_pred             ccCCCCCCC--C----CCCCCCccccc-cCcccccccccccCCCCCcccCCcccCCcccceeeccc----------cccc
Q 046017          150 MSKCSNLKR--F----PKIASCNKVGI-TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIA----------CKKL  212 (443)
Q Consensus       150 l~~~~~l~~--~----~~~~~l~~L~l-~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~----------n~~~  212 (443)
                      +++|. +..  +    ....+++.|++ +.+..             ..++.....+++|++|++++          |+..
T Consensus       300 Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~-------------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~  365 (592)
T 3ogk_B          300 LLYAL-LETEDHCTLIQKCPNLEVLETRNVIGD-------------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV  365 (592)
T ss_dssp             ETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHH-------------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred             cCCCc-CCHHHHHHHHHhCcCCCEEeccCccCH-------------HHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence            88775 321  1    11144555544 11110             12223335677888998884          4333


Q ss_pred             c-c-ccccccCCCCcceeeccCccCCCCCCchhhc-CCCCCcEeccc----cccccc-----CCCCCCCCCCCceEEecC
Q 046017          213 E-R-LPESLGQLALLCELKMIKCSSFESLPSSLCM-LKSLTPLAIID----CKIFKR-----LPNELGNLKCLAALIVKG  280 (443)
Q Consensus       213 ~-~-~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~-l~~L~~L~l~~----n~~~~~-----~~~~l~~l~~L~~L~l~~  280 (443)
                      . . ++.....+++|++|+++.+.+.+..+..+.. +++|++|++++    |.+.+.     ++..+.++++|++|++++
T Consensus       366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred             CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence            2 2 3333455788999998777776655555555 88899999873    334321     222255688899999976


Q ss_pred             CC--Cc-c-cChhccCCCCCCEEEccCCCCC--CCChhhhCCCCCCeeeCCCCCCCc--cCcccccCCCCCccccccccc
Q 046017          281 TA--IR-E-VPESLGYLSSLAKLELSNNNLK--RTPESLYQLSSLKYLKPFENNSDR--IPEYLRSSPTSIPSELRSLNL  352 (443)
Q Consensus       281 n~--l~-~-lp~~~~~l~~L~~L~ls~n~l~--~lp~~l~~l~~L~~L~ls~n~l~~--lp~~~~~~~~~lp~~L~~L~l  352 (443)
                      |.  ++ . +......+++|++|++++|+++  .++..+..+++|++|++++|.++.  ++..+..+     ++|++|++
T Consensus       446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l  520 (592)
T 3ogk_B          446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL-----PSLRYLWV  520 (592)
T ss_dssp             CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC-----SSCCEEEE
T ss_pred             CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc-----CccCeeEC
Confidence            53  55 2 2222345788999999999887  355667788999999999988743  34433333     68999999


Q ss_pred             ccCCCCc
Q 046017          353 SVDSGNS  359 (443)
Q Consensus       353 ~~N~l~~  359 (443)
                      ++|.++.
T Consensus       521 s~n~it~  527 (592)
T 3ogk_B          521 QGYRASM  527 (592)
T ss_dssp             ESCBCCT
T ss_pred             cCCcCCH
Confidence            9987654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=9.6e-23  Score=189.25  Aligned_cols=219  Identities=20%  Similarity=0.167  Sum_probs=116.8

Q ss_pred             eEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEecCCCC
Q 046017           23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELELKNSS  101 (443)
Q Consensus        23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~~~  101 (443)
                      .++..+.. ...+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .|..+++|++|++++  
T Consensus        11 ~~~c~~~~-l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~--   85 (276)
T 2z62_A           11 TYQCMELN-FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG--   85 (276)
T ss_dssp             EEECTTSC-CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT--
T ss_pred             eEEecCCC-ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC--
Confidence            34444433 445665443  467888888877665555567777788888877777765543 444444444444433  


Q ss_pred             CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccc
Q 046017          102 EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTL  180 (443)
Q Consensus       102 ~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l  180 (443)
                                  |.++.++ ..+.++++|++|++++|                                           
T Consensus        86 ------------n~l~~~~~~~~~~l~~L~~L~l~~n-------------------------------------------  110 (276)
T 2z62_A           86 ------------NPIQSLALGAFSGLSSLQKLVAVET-------------------------------------------  110 (276)
T ss_dssp             ------------CCCCEECTTTTTTCTTCCEEECTTS-------------------------------------------
T ss_pred             ------------CccCccChhhhcCCccccEEECCCC-------------------------------------------
Confidence                        4444443 33444555555555443                                           


Q ss_pred             cccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCC-CCCchhhcCCCCCcEecccccc
Q 046017          181 RLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFE-SLPSSLCMLKSLTPLAIIDCKI  259 (443)
Q Consensus       181 ~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~-~~p~~~~~l~~L~~L~l~~n~~  259 (443)
                                                   .+.+..+..++.+++|++|++++|.+.+ .+|..+..+++|++|++++|++
T Consensus       111 -----------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          111 -----------------------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             -----------------------------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             -----------------------------CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence                                         3322222234444444445554444433 2344455555555555555554


Q ss_pred             cccCCCCCCCCCCCc----eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC
Q 046017          260 FKRLPNELGNLKCLA----ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       260 ~~~~~~~l~~l~~L~----~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~  330 (443)
                      .+..+..+..+++|+    .|++++|.++.++.......+|++|++++|+++.+|. .+..+++|++|++++|.+.
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            433333333333333    5666666666555544444566666666666666653 3455666666666666653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.7e-22  Score=187.53  Aligned_cols=163  Identities=19%  Similarity=0.182  Sum_probs=136.6

Q ss_pred             cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccc-cCCCCCCCCCC
Q 046017          194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK-RLPNELGNLKC  272 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~  272 (443)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~  150 (276)
T 2z62_A           71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (276)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence            46778899999999988887777889999999999999998877666678899999999999999866 36888999999


Q ss_pred             CceEEecCCCCcccC-hhccCCCCCC----EEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccc
Q 046017          273 LAALIVKGTAIREVP-ESLGYLSSLA----KLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSEL  347 (443)
Q Consensus       273 L~~L~l~~n~l~~lp-~~~~~l~~L~----~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L  347 (443)
                      |++|++++|+++.++ ..+..+++|+    .|++++|+++.++.......+|++|++++|+++.+|..+...   + ++|
T Consensus       151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---l-~~L  226 (276)
T 2z62_A          151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR---L-TSL  226 (276)
T ss_dssp             CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT---C-CSC
T ss_pred             CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc---c-ccc
Confidence            999999999999765 4455555565    899999999988876666779999999999999998765331   1 689


Q ss_pred             cccccccCCCCcc
Q 046017          348 RSLNLSVDSGNSL  360 (443)
Q Consensus       348 ~~L~l~~N~l~~l  360 (443)
                      ++|++++|.++.-
T Consensus       227 ~~L~l~~N~~~c~  239 (276)
T 2z62_A          227 QKIWLHTNPWDCS  239 (276)
T ss_dssp             CEEECCSSCBCCC
T ss_pred             cEEEccCCccccc
Confidence            9999999987653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=9.8e-22  Score=181.84  Aligned_cols=162  Identities=25%  Similarity=0.254  Sum_probs=114.0

Q ss_pred             cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017          194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL  273 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  273 (443)
                      .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            35566667777776666554444445667777777777776665555566777777778887777766556667777888


Q ss_pred             ceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccc
Q 046017          274 AALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLN  351 (443)
Q Consensus       274 ~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~  351 (443)
                      ++|++++|.++.+|.. +..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|......   + ++|+.|+
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l-~~L~~L~  211 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS---L-EKLKMLQ  211 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT---C-TTCCEEE
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc---c-cCCCEEE
Confidence            8888888888777654 6777888888888888887764 4777888888888888887777653221   1 5788888


Q ss_pred             cccCCCCc
Q 046017          352 LSVDSGNS  359 (443)
Q Consensus       352 l~~N~l~~  359 (443)
                      +++|.+..
T Consensus       212 l~~N~~~c  219 (270)
T 2o6q_A          212 LQENPWDC  219 (270)
T ss_dssp             CCSSCBCC
T ss_pred             ecCCCeeC
Confidence            88886544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5.5e-22  Score=185.32  Aligned_cols=158  Identities=27%  Similarity=0.216  Sum_probs=114.4

Q ss_pred             cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017          194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL  273 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  273 (443)
                      .+..+++|++|++++|.+.+. +.. +.+++|++|++++|.+. .+|..+..+++|++|++++|++.+..+..+..+++|
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L  126 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL  126 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred             HhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence            355566666666666554443 222 56677777777776554 566667777788888888887765555667788888


Q ss_pred             ceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccc
Q 046017          274 AALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLN  351 (443)
Q Consensus       274 ~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~  351 (443)
                      ++|++++|+++.+|.. +..+++|+.|++++|+++.+|. .+..+++|++|++++|+++.+|..++..     .+|+.++
T Consensus       127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-----~~L~~l~  201 (290)
T 1p9a_G          127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-----HLLPFAF  201 (290)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----CCCSEEE
T ss_pred             CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc-----ccCCeEE
Confidence            8888888888876654 4677888888888888888775 4567888888888888888888877664     5788888


Q ss_pred             cccCCCCc
Q 046017          352 LSVDSGNS  359 (443)
Q Consensus       352 l~~N~l~~  359 (443)
                      +++|.+..
T Consensus       202 L~~Np~~C  209 (290)
T 1p9a_G          202 LHGNPWLC  209 (290)
T ss_dssp             CCSCCBCC
T ss_pred             eCCCCccC
Confidence            88886643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1e-21  Score=183.43  Aligned_cols=64  Identities=17%  Similarity=0.207  Sum_probs=38.4

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS   83 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp   83 (443)
                      .+++++++++++++ ++.+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.++.++
T Consensus         8 ~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   71 (290)
T 1p9a_G            8 KVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ   71 (290)
T ss_dssp             CSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred             ccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc
Confidence            35566777776665 445554443  46666666666665555556666666666666666555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.87  E-value=3.5e-24  Score=220.45  Aligned_cols=323  Identities=15%  Similarity=0.110  Sum_probs=185.7

Q ss_pred             cCCCcceEEecCCCCC---CcCCcccc------------CCCCCcEEeccccccccccccccCC-CC-cccEEEeecCc-
Q 046017           17 ERPCSCGLRLKNCSSL---ESFPSSLC------------VLKSLRSLQIIDCKKFERLLDELGN-LE-TLLVLRVEGAA-   78 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~---~~~p~~~~------------~l~~L~~L~L~~n~~~~~~p~~~~~-l~-~L~~L~l~~n~-   78 (443)
                      .+++|++|++++|...   +.+|..++            .+++|++|+|++|.+.+..+..++. ++ +|++|+++++. 
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~  150 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG  150 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence            5889999999886532   23332222            6889999999998876665555655 34 49999998865 


Q ss_pred             hh--hhhhhhccCCCCcEEecCCCC--------------CCCCccEEEEeCCCCc-----ccCccccCCCCCCEEeccCC
Q 046017           79 IR--ELSQSLGQLALLSELELKNSS--------------EFEYLRVLRVEGAAIR-----ELPESIGKSTLLSELELKNC  137 (443)
Q Consensus        79 l~--~lp~~~~~l~~L~~L~ls~~~--------------~l~~L~~L~l~~n~~~-----~lp~~l~~l~~L~~L~l~~n  137 (443)
                      ++  .++.....+++|++|++++|.              .+++|++|++++|.++     .++..+.++++|++|++++|
T Consensus       151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            32  455556688999999999884              3589999999998875     34455567899999999998


Q ss_pred             CCC-------CCCCcCEEEccCCCCCCCCC---CC----CCCccccccCcccccccccccCCCCCcccCCcccCCcccce
Q 046017          138 SEL-------KLKSLRRIKMSKCSNLKRFP---KI----ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF  203 (443)
Q Consensus       138 ~~~-------~l~~L~~L~l~~~~~l~~~~---~~----~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~  203 (443)
                      ...       .+++|++|+++.+......+   ..    .+++.+++....             ...+|..+..+++|++
T Consensus       231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-------------PNEMPILFPFAAQIRK  297 (592)
T ss_dssp             BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-------------TTTGGGGGGGGGGCCE
T ss_pred             cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-------------hhHHHHHHhhcCCCcE
Confidence            654       67889999998643331111   11    334444442211             1223333444455555


Q ss_pred             eecccccccc-------------------------cccccccCCCCcceeeccC----------ccCCC-C-CCchhhcC
Q 046017          204 LETIACKKLE-------------------------RLPESLGQLALLCELKMIK----------CSSFE-S-LPSSLCML  246 (443)
Q Consensus       204 L~ls~n~~~~-------------------------~~p~~l~~l~~L~~L~ls~----------n~~~~-~-~p~~~~~l  246 (443)
                      |++++|.+..                         .++.....+++|++|++++          |...+ . ++.....+
T Consensus       298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~  377 (592)
T 3ogk_B          298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC  377 (592)
T ss_dssp             EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred             EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence            5555544322                         2222223344555555552          22111 1 11122335


Q ss_pred             CCCCcEecccccccccCCCCCCC-CCCCceEEec----CCCCccc------ChhccCCCCCCEEEccCCC--CC-CCChh
Q 046017          247 KSLTPLAIIDCKIFKRLPNELGN-LKCLAALIVK----GTAIREV------PESLGYLSSLAKLELSNNN--LK-RTPES  312 (443)
Q Consensus       247 ~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~l~~l------p~~~~~l~~L~~L~ls~n~--l~-~lp~~  312 (443)
                      ++|++|+++.+.+.+..+..+.. +++|++|+++    .|.++..      +..+..+++|+.|++++|.  ++ ..+..
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~  457 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY  457 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence            55555555544444333333332 5566666664    3355532      2234456666666665432  33 11122


Q ss_pred             -hhCCCCCCeeeCCCCCCCc--cCcccccCCCCCcccccccccccCCC
Q 046017          313 -LYQLSSLKYLKPFENNSDR--IPEYLRSSPTSIPSELRSLNLSVDSG  357 (443)
Q Consensus       313 -l~~l~~L~~L~ls~n~l~~--lp~~~~~~~~~lp~~L~~L~l~~N~l  357 (443)
                       ...+++|++|++++|+++.  ++..+..+     ++|++|++++|.+
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-----~~L~~L~l~~n~l  500 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGC-----PNLQKLEMRGCCF  500 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCC-----TTCCEEEEESCCC
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcC-----cccCeeeccCCCC
Confidence             2346777777777777643  33333332     5777777777764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.5e-21  Score=177.27  Aligned_cols=152  Identities=18%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             ccCCcccceeeccc-ccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCC---cEecccc-cccccCCCCCCC
Q 046017          195 LCMLKSLRFLETIA-CKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLT---PLAIIDC-KIFKRLPNELGN  269 (443)
Q Consensus       195 ~~~l~~L~~L~ls~-n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~  269 (443)
                      +..+++|++|++++ |.+.+..+..+..+++|++|++++|.+.+ +|. +..+++|+   +|++++| .+.+..+..+..
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence            44445555555554 33333333445555556666665555443 443 55555555   6666666 554433445666


Q ss_pred             CCCCc-eEEecCCCCcccChhccCCCCCCEEEccCCC-CCCCC-hhhhCC-CCCCeeeCCCCCCCccCcccccCCCCCcc
Q 046017          270 LKCLA-ALIVKGTAIREVPESLGYLSSLAKLELSNNN-LKRTP-ESLYQL-SSLKYLKPFENNSDRIPEYLRSSPTSIPS  345 (443)
Q Consensus       270 l~~L~-~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~-l~~lp-~~l~~l-~~L~~L~ls~n~l~~lp~~~~~~~~~lp~  345 (443)
                      +++|+ +|++++|+++.+|......++|+.|++++|+ ++.+| ..+..+ ++|++|++++|+++.+|..  .     .+
T Consensus       154 l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~-----~~  226 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--G-----LE  226 (239)
T ss_dssp             TBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--T-----CT
T ss_pred             hhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--H-----hc
Confidence            67777 7777777777666554444667777777774 76664 446666 7777777777777777664  1     14


Q ss_pred             cccccccccC
Q 046017          346 ELRSLNLSVD  355 (443)
Q Consensus       346 ~L~~L~l~~N  355 (443)
                      +|+.|+++++
T Consensus       227 ~L~~L~l~~~  236 (239)
T 2xwt_C          227 HLKELIARNT  236 (239)
T ss_dssp             TCSEEECTTC
T ss_pred             cCceeeccCc
Confidence            6777776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=5e-23  Score=196.67  Aligned_cols=234  Identities=17%  Similarity=0.141  Sum_probs=144.7

Q ss_pred             CCCccCCCCCccCCCcceEEecCCCCCCcCCccccCC--CCCcEEeccccccccccccccCCCCcccEEEeecCchh--h
Q 046017            6 PSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVL--KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR--E   81 (443)
Q Consensus         6 ~~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~--~   81 (443)
                      -|.+|.++.+. ...++.++++++.+.   +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.++  .
T Consensus        35 vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~  109 (336)
T 2ast_B           35 VCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST  109 (336)
T ss_dssp             SCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred             HHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence            45567766542 346889999987643   4556666  8899999999887665554 567899999999998886  2


Q ss_pred             hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc-ccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCC
Q 046017           82 LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR-ELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFP  160 (443)
Q Consensus        82 lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~-~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~  160 (443)
                      +|..+..+++|++|++++              |.++ ..|..+..+++|++|++++|                ..++.  
T Consensus       110 ~~~~~~~~~~L~~L~L~~--------------~~l~~~~~~~l~~~~~L~~L~L~~~----------------~~l~~--  157 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEG--------------LRLSDPIVNTLAKNSNLVRLNLSGC----------------SGFSE--  157 (336)
T ss_dssp             HHHHHTTBCCCSEEECTT--------------CBCCHHHHHHHTTCTTCSEEECTTC----------------BSCCH--
T ss_pred             HHHHHhhCCCCCEEeCcC--------------cccCHHHHHHHhcCCCCCEEECCCC----------------CCCCH--
Confidence            777777777777776665              4433 44555666777777777665                11110  


Q ss_pred             CCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccc-ccccc-ccccccCCC-CcceeeccCcc--C
Q 046017          161 KIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIAC-KKLER-LPESLGQLA-LLCELKMIKCS--S  235 (443)
Q Consensus       161 ~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n-~~~~~-~p~~l~~l~-~L~~L~ls~n~--~  235 (443)
                                                  ..++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|.  +
T Consensus       158 ----------------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~  209 (336)
T 2ast_B          158 ----------------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL  209 (336)
T ss_dssp             ----------------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred             ----------------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence                                        013334556667777777776 54432 455566666 77777777763  3


Q ss_pred             C-CCCCchhhcCCCCCcEeccccc-ccccCCCCCCCCCCCceEEecCCC-Cc-ccChhccCCCCCCEEEccCC
Q 046017          236 F-ESLPSSLCMLKSLTPLAIIDCK-IFKRLPNELGNLKCLAALIVKGTA-IR-EVPESLGYLSSLAKLELSNN  304 (443)
Q Consensus       236 ~-~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-l~-~lp~~~~~l~~L~~L~ls~n  304 (443)
                      . +.++..+..+++|++|++++|. +.+..+..+..+++|++|++++|. +. .....+..+++|+.|++++|
T Consensus       210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            2 3445555666666666666666 433444455555666666666652 22 11123445555555555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1e-21  Score=185.21  Aligned_cols=134  Identities=22%  Similarity=0.263  Sum_probs=93.5

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus       103 ~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  176 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLT  176 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred             hcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCC
Confidence            4455566666666655443 22 266667777777777665443 22 6677777788887777744 333 67778888


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCccc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYL  336 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~  336 (443)
                      +|++++|.++.++. +..+++|++|++++|+++.+++ +..+++|++|++++|+++..|..+
T Consensus       177 ~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~  236 (308)
T 1h6u_A          177 TLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY  236 (308)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred             EEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence            88888888877765 6778888888888888887774 778888888888888887776643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.3e-21  Score=184.59  Aligned_cols=156  Identities=19%  Similarity=0.197  Sum_probs=133.8

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ ++. +..+++|+
T Consensus        81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  154 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQ  154 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred             HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCcc
Confidence            6677888888888877554 33 68899999999999998765 44 38899999999999999865 333 88899999


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV  354 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~  354 (443)
                      +|++++|.++.++. +..+++|+.|++++|+++.++. +..+++|++|++++|+++.+++ +..+     ++|++|++++
T Consensus       155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l-----~~L~~L~l~~  226 (308)
T 1h6u_A          155 YLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANT-----SNLFIVTLTN  226 (308)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTC-----TTCCEEEEEE
T ss_pred             EEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCC-----CCCCEEEccC
Confidence            99999999998887 8999999999999999999886 8999999999999999998885 5444     7999999999


Q ss_pred             CCCCcccCCh
Q 046017          355 DSGNSLNLDL  364 (443)
Q Consensus       355 N~l~~l~~~~  364 (443)
                      |.++..|..+
T Consensus       227 N~i~~~~~~~  236 (308)
T 1h6u_A          227 QTITNQPVFY  236 (308)
T ss_dssp             EEEECCCEEC
T ss_pred             CeeecCCeee
Confidence            9888776554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.4e-23  Score=202.93  Aligned_cols=46  Identities=11%  Similarity=0.041  Sum_probs=29.3

Q ss_pred             cCCccccCCCCCcEEeccccccccc----cccccCCCCcccEEEeecCch
Q 046017           34 SFPSSLCVLKSLRSLQIIDCKKFER----LLDELGNLETLLVLRVEGAAI   79 (443)
Q Consensus        34 ~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l   79 (443)
                      .++..+..+++|++|++++|.+...    ++..+..+++|++|++++|.+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~   72 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT   72 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc
Confidence            4555566677777777777766543    334466677777777777543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=6.6e-21  Score=176.42  Aligned_cols=163  Identities=20%  Similarity=0.227  Sum_probs=119.8

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  160 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT  160 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence            56677788888888777766666677888888888888877766666677888888888888887665555677888888


Q ss_pred             eEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccc
Q 046017          275 ALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNL  352 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l  352 (443)
                      +|++++|+++.++.. +..+++|++|++++|+++.++. .+..+++|++|++++|.+..-          . ++|+.+++
T Consensus       161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----------~-~~l~~l~~  229 (272)
T 3rfs_A          161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----------C-PGIRYLSE  229 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----------T-TTTHHHHH
T ss_pred             EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----------C-cHHHHHHH
Confidence            888888888866654 5778888888888888887764 467888888888888876421          1 46777887


Q ss_pred             ccCCCC-cccCChhhhh
Q 046017          353 SVDSGN-SLNLDLNKLS  368 (443)
Q Consensus       353 ~~N~l~-~l~~~~~~l~  368 (443)
                      +.|.++ .+|..+.++.
T Consensus       230 ~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          230 WINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             HHHHTGGGBBCTTSCBC
T ss_pred             HHHhCCCcccCcccccC
Confidence            777443 4566555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=5.2e-21  Score=180.62  Aligned_cols=223  Identities=19%  Similarity=0.159  Sum_probs=120.5

Q ss_pred             CcccEEEeecCchh-----hhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc-ccCccc--cCCCCCCEEeccCCC
Q 046017           67 ETLLVLRVEGAAIR-----ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR-ELPESI--GKSTLLSELELKNCS  138 (443)
Q Consensus        67 ~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~-~lp~~l--~~l~~L~~L~l~~n~  138 (443)
                      ..++.+.+.+..++     .++..+ .+              ++|++|++++|.++ ..|..+  ..+++|++|++++|.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~-~~--------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~  128 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVL-AY--------------SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS  128 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHH-HH--------------SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhc-cc--------------CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc
Confidence            35778888876664     222211 12              34666666677755 556666  778888888888874


Q ss_pred             CCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccC-CcccCCcccceeecccccccccccc
Q 046017          139 ELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLP-SSLCMLKSLRFLETIACKKLERLPE  217 (443)
Q Consensus       139 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp-~~~~~l~~L~~L~ls~n~~~~~~p~  217 (443)
                      +..                ..+                             .++ ..+..+++|++|++++|.+.+..+.
T Consensus       129 i~~----------------~~~-----------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  163 (310)
T 4glp_A          129 WAT----------------GRS-----------------------------WLAELQQWLKPGLKVLSIAQAHSPAFSCE  163 (310)
T ss_dssp             CSS----------------TTS-----------------------------SHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred             ccc----------------hhh-----------------------------hhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence            321                000                             000 1123455566666666555555555


Q ss_pred             cccCCCCcceeeccCccCCCC--C--CchhhcCCCCCcEecccccccccCCC----CCCCCCCCceEEecCCCCccc-Ch
Q 046017          218 SLGQLALLCELKMIKCSSFES--L--PSSLCMLKSLTPLAIIDCKIFKRLPN----ELGNLKCLAALIVKGTAIREV-PE  288 (443)
Q Consensus       218 ~l~~l~~L~~L~ls~n~~~~~--~--p~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~~l-p~  288 (443)
                      .++.+++|++|++++|.+.+.  +  +..+..+++|++|++++|++. .++.    .+..+++|++|++++|+++.+ |.
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            555666666666666554331  1  112245556666666666552 1221    124455666666666666544 44


Q ss_pred             hccCC---CCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017          289 SLGYL---SSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       289 ~~~~l---~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      .+..+   ++|++|++++|+++.+|..+.  ++|++|++++|+++.+|. +..+     ++|++|++++|.++
T Consensus       243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l-----~~L~~L~L~~N~l~  307 (310)
T 4glp_A          243 SAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDEL-----PEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSC-----CCCSCEECSSTTTS
T ss_pred             hHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhC-----CCccEEECcCCCCC
Confidence            44444   466666666666666665442  566666666666665544 2222     46666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.3e-21  Score=181.97  Aligned_cols=160  Identities=19%  Similarity=0.101  Sum_probs=136.3

Q ss_pred             cCCcccceeeccccccccccc----ccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccccccc--C--CCCC
Q 046017          196 CMLKSLRFLETIACKKLERLP----ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKR--L--PNEL  267 (443)
Q Consensus       196 ~~l~~L~~L~ls~n~~~~~~p----~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--~--~~~l  267 (443)
                      ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            788999999999999887554    3455789999999999999888888999999999999999987652  2  2345


Q ss_pred             CCCCCCceEEecCCCCcccChh----ccCCCCCCEEEccCCCCCCC-ChhhhCC---CCCCeeeCCCCCCCccCcccccC
Q 046017          268 GNLKCLAALIVKGTAIREVPES----LGYLSSLAKLELSNNNLKRT-PESLYQL---SSLKYLKPFENNSDRIPEYLRSS  339 (443)
Q Consensus       268 ~~l~~L~~L~l~~n~l~~lp~~----~~~l~~L~~L~ls~n~l~~l-p~~l~~l---~~L~~L~ls~n~l~~lp~~~~~~  339 (443)
                      ..+++|++|++++|+++.++..    +..+++|++|++++|+++.+ |..+..+   ++|++|++++|+++.+|..+   
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---  270 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---  270 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---
Confidence            7899999999999999877653    57789999999999999976 7767666   69999999999999998863   


Q ss_pred             CCCCcccccccccccCCCCcccC
Q 046017          340 PTSIPSELRSLNLSVDSGNSLNL  362 (443)
Q Consensus       340 ~~~lp~~L~~L~l~~N~l~~l~~  362 (443)
                          +++|++|++++|.++.+|.
T Consensus       271 ----~~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          271 ----PAKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             ----CSCCSCEECCSCCCCSCCC
T ss_pred             ----cCCCCEEECCCCcCCCCch
Confidence                4799999999999988754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.1e-20  Score=171.56  Aligned_cols=202  Identities=17%  Similarity=0.168  Sum_probs=111.2

Q ss_pred             CCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCc-hhhhhh-hhccCCCCcEEecCCCCCCCCccEE
Q 046017           32 LESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAA-IRELSQ-SLGQLALLSELELKNSSEFEYLRVL  109 (443)
Q Consensus        32 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~lp~-~~~~l~~L~~L~ls~~~~l~~L~~L  109 (443)
                      .+.+|. +.  ++|++|++++|.+.+..+..|+.+++|++|++++|. ++.++. .|.++++|              ++|
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L--------------~~L   85 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV--------------THI   85 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC--------------CEE
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC--------------cEE
Confidence            556666 33  378888888887665555577788888888888876 766653 45444433              333


Q ss_pred             EEeC-CCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCC
Q 046017          110 RVEG-AAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSS  187 (443)
Q Consensus       110 ~l~~-n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~  187 (443)
                      ++++ |.++.+|. .+.++++|++|++++|                                                  
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n--------------------------------------------------  115 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNT--------------------------------------------------  115 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEE--------------------------------------------------
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCC--------------------------------------------------
Confidence            4444 44555543 3455555555555554                                                  


Q ss_pred             CcccCCcccCCcccceeecccccccccccccccCCCCcc---eeeccCc-cCCCCCCchhhcCCCCC-cEeccccccccc
Q 046017          188 LESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLC---ELKMIKC-SSFESLPSSLCMLKSLT-PLAIIDCKIFKR  262 (443)
Q Consensus       188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~---~L~ls~n-~~~~~~p~~~~~l~~L~-~L~l~~n~~~~~  262 (443)
                                            .+.+ +|. +..+++|+   +|++++| .+.+..+..+..+++|+ +|++++|++. .
T Consensus       116 ----------------------~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~  170 (239)
T 2xwt_C          116 ----------------------GLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S  170 (239)
T ss_dssp             ----------------------CCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-E
T ss_pred             ----------------------CCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-c
Confidence                                  2222 222 33333333   4444444 33222223344455555 5555555553 3


Q ss_pred             CCCCCCCCCCCceEEecCC-CCcccC-hhccCC-CCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCC
Q 046017          263 LPNELGNLKCLAALIVKGT-AIREVP-ESLGYL-SSLAKLELSNNNLKRTPESLYQLSSLKYLKPFEN  327 (443)
Q Consensus       263 ~~~~l~~l~~L~~L~l~~n-~l~~lp-~~~~~l-~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n  327 (443)
                      +|......++|++|++++| .++.+| ..+..+ ++|+.|++++|+++.+|..  .+++|+.|+++++
T Consensus       171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            3333222256666666666 366554 335556 6677777777777666653  5666677766653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=3.5e-21  Score=178.32  Aligned_cols=138  Identities=17%  Similarity=0.165  Sum_probs=102.5

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|+
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            45666777777777766665556677778888888888777666566677788888888888887665555677888888


Q ss_pred             eEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCC-CccCccccc
Q 046017          275 ALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNS-DRIPEYLRS  338 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l-~~lp~~~~~  338 (443)
                      +|++++|.++.++.. +..+++|+.|++++|.+..      .++.|+.|++..|.+ +.+|..++.
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCcccc
Confidence            888888888866543 6778888888888887663      355788888888777 577776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.6e-22  Score=197.06  Aligned_cols=245  Identities=16%  Similarity=0.140  Sum_probs=172.6

Q ss_pred             cccccccCCCCcccEEEeecCchhh-----hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCC-cccCccc-------
Q 046017           57 ERLLDELGNLETLLVLRVEGAAIRE-----LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAI-RELPESI-------  123 (443)
Q Consensus        57 ~~~p~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~-~~lp~~l-------  123 (443)
                      ..++..+..+++|++|++++|.++.     ++..+..+++|++|++++|..           +.+ +.+|..+       
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~-----------~~l~~~~~~~~~~l~~~l   90 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-----------GRVKDEIPEALRLLLQAL   90 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT-----------TSCGGGSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc-----------CccccchhHHHHHHHHHH
Confidence            4677778889999999999998863     344566777777777766420           111 1334333       


Q ss_pred             cCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccce
Q 046017          124 GKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF  203 (443)
Q Consensus       124 ~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~  203 (443)
                      ..+++|++|++++|.                 ++.                           .....+|..+..+++|++
T Consensus        91 ~~~~~L~~L~Ls~n~-----------------l~~---------------------------~~~~~l~~~l~~~~~L~~  126 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNA-----------------FGP---------------------------TAQEPLIDFLSKHTPLEH  126 (386)
T ss_dssp             TTCTTCCEEECCSCC-----------------CCT---------------------------TTHHHHHHHHHHCTTCCE
T ss_pred             hhCCcccEEECCCCc-----------------CCH---------------------------HHHHHHHHHHHhCCCCCE
Confidence            567777777777762                 110                           111235556677888888


Q ss_pred             eeccccccccccc----ccccCC---------CCcceeeccCccCC-CCCC---chhhcCCCCCcEecccccccc-----
Q 046017          204 LETIACKKLERLP----ESLGQL---------ALLCELKMIKCSSF-ESLP---SSLCMLKSLTPLAIIDCKIFK-----  261 (443)
Q Consensus       204 L~ls~n~~~~~~p----~~l~~l---------~~L~~L~ls~n~~~-~~~p---~~~~~l~~L~~L~l~~n~~~~-----  261 (443)
                      |++++|.+....+    ..+..+         ++|++|++++|.+. ..++   ..+..+++|++|++++|.+..     
T Consensus       127 L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~  206 (386)
T 2ca6_A          127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH  206 (386)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred             EECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH
Confidence            8888887754333    333333         78999999988876 3444   456678899999999988752     


Q ss_pred             cCCCCCCCCCCCceEEecCCCC-----cccChhccCCCCCCEEEccCCCCCC-----CChhhhC--CCCCCeeeCCCCCC
Q 046017          262 RLPNELGNLKCLAALIVKGTAI-----REVPESLGYLSSLAKLELSNNNLKR-----TPESLYQ--LSSLKYLKPFENNS  329 (443)
Q Consensus       262 ~~~~~l~~l~~L~~L~l~~n~l-----~~lp~~~~~l~~L~~L~ls~n~l~~-----lp~~l~~--l~~L~~L~ls~n~l  329 (443)
                      ..+..+..+++|++|++++|.+     ..+|..+..+++|++|++++|.++.     ++..+..  +++|++|++++|.+
T Consensus       207 l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            2344677888999999999988     4677788888999999999999884     3566644  88999999999998


Q ss_pred             Cc-----cCccc-ccCCCCCcccccccccccCCCCccc
Q 046017          330 DR-----IPEYL-RSSPTSIPSELRSLNLSVDSGNSLN  361 (443)
Q Consensus       330 ~~-----lp~~~-~~~~~~lp~~L~~L~l~~N~l~~l~  361 (443)
                      +.     +|..+ ..+     ++|++|++++|.++...
T Consensus       287 ~~~g~~~l~~~l~~~l-----~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          287 ELDAVRTLKTVIDEKM-----PDLLFLELNGNRFSEED  319 (386)
T ss_dssp             BHHHHHHHHHHHHHHC-----TTCCEEECTTSBSCTTS
T ss_pred             CHHHHHHHHHHHHhcC-----CCceEEEccCCcCCcch
Confidence            76     77766 323     68999999999877543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=4e-20  Score=169.08  Aligned_cols=173  Identities=18%  Similarity=0.214  Sum_probs=147.7

Q ss_pred             cccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCC
Q 046017          189 ESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELG  268 (443)
Q Consensus       189 ~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~  268 (443)
                      ..+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus        27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  104 (251)
T 3m19_A           27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD  104 (251)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence            44454443  5899999999998888888899999999999999999888888899999999999999999876667789


Q ss_pred             CCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcc-cccCCCCCcc
Q 046017          269 NLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEY-LRSSPTSIPS  345 (443)
Q Consensus       269 ~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~-~~~~~~~lp~  345 (443)
                      .+++|++|++++|+++.+|.. +..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|.. +..+     +
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~  179 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL-----G  179 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----T
T ss_pred             ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC-----C
Confidence            999999999999999988765 5889999999999999999886 689999999999999999988864 4333     6


Q ss_pred             cccccccccCCCCcccCChhhhh
Q 046017          346 ELRSLNLSVDSGNSLNLDLNKLS  368 (443)
Q Consensus       346 ~L~~L~l~~N~l~~l~~~~~~l~  368 (443)
                      +|++|++++|.+..-+..+..+.
T Consensus       180 ~L~~L~l~~N~~~c~~~~~~~l~  202 (251)
T 3m19_A          180 KLQTITLFGNQFDCSRCEILYLS  202 (251)
T ss_dssp             TCCEEECCSCCBCTTSTTHHHHH
T ss_pred             CCCEEEeeCCceeCCccccHHHH
Confidence            89999999998876544444333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=6.3e-22  Score=191.11  Aligned_cols=250  Identities=12%  Similarity=0.063  Sum_probs=136.8

Q ss_pred             eEEecCCCCCCcCCccccCCCCCcEEeccccccccccc----cccCCCC-cccEEEeecCchhhh-hhhhccC-----CC
Q 046017           23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLL----DELGNLE-TLLVLRVEGAAIREL-SQSLGQL-----AL   91 (443)
Q Consensus        23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~-~L~~L~l~~n~l~~l-p~~~~~l-----~~   91 (443)
                      .++++.+.+.+.+|..+...++|++|++++|.+.+..+    ..+..++ +|++|++++|.++.. +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45778888777777766666679999999888665544    6677788 889999998888743 4444443     55


Q ss_pred             CcEEecCCCCCCCCccEEEEeCCCCcccCcc-----ccCC-CCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCC
Q 046017           92 LSELELKNSSEFEYLRVLRVEGAAIRELPES-----IGKS-TLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASC  165 (443)
Q Consensus        92 L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~-----l~~l-~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l  165 (443)
                      |++|++++              |.++..+..     +..+ ++|++|++++|.+.                 ..+.    
T Consensus        82 L~~L~Ls~--------------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----------------~~~~----  126 (362)
T 3goz_A           82 VTSLNLSG--------------NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-----------------SKSS----  126 (362)
T ss_dssp             CCEEECCS--------------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-----------------GSCH----
T ss_pred             ccEEECcC--------------CcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-----------------cHHH----
Confidence            55555544              555543322     3334 56666666665221                 0000    


Q ss_pred             ccccccCcccccccccccCCCCCcccCCcccC-Ccccceeecccccccc----cccccccCCC-CcceeeccCccCCCCC
Q 046017          166 NKVGITGIKRLSSTLRLKNCSSLESLPSSLCM-LKSLRFLETIACKKLE----RLPESLGQLA-LLCELKMIKCSSFESL  239 (443)
Q Consensus       166 ~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~-l~~L~~L~ls~n~~~~----~~p~~l~~l~-~L~~L~ls~n~~~~~~  239 (443)
                                             ..+...+.. .++|++|++++|.+..    .++..+..++ +|++|++++|.+.+..
T Consensus       127 -----------------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          127 -----------------------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             -----------------------HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             -----------------------HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence                                   011111222 2356666666555443    2223333343 5666666666554444


Q ss_pred             Cchhh----cC-CCCCcEeccccccccc----CCCCCCC-CCCCceEEecCCCCcccC-----hhccCCCCCCEEEccCC
Q 046017          240 PSSLC----ML-KSLTPLAIIDCKIFKR----LPNELGN-LKCLAALIVKGTAIREVP-----ESLGYLSSLAKLELSNN  304 (443)
Q Consensus       240 p~~~~----~l-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~l~~lp-----~~~~~l~~L~~L~ls~n  304 (443)
                      +..+.    .. ++|++|++++|.+...    ++..+.. .++|++|++++|.++..+     ..+..+++|++|++++|
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            33222    23 3666666666655431    2222333 235666666666665332     23345566666666666


Q ss_pred             CCCCC--------ChhhhCCCCCCeeeCCCCCCC
Q 046017          305 NLKRT--------PESLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       305 ~l~~l--------p~~l~~l~~L~~L~ls~n~l~  330 (443)
                      .+..+        +..+..+++|++||+++|+++
T Consensus       264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             CccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            64332        223455666666666666664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=6.2e-20  Score=167.77  Aligned_cols=178  Identities=18%  Similarity=0.216  Sum_probs=144.1

Q ss_pred             CccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccC
Q 046017          105 YLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKN  184 (443)
Q Consensus       105 ~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~  184 (443)
                      ..++++++++.++.+|..+.  +.+++|++++|                 .+..+                         
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-----------------~l~~~-------------------------   50 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-----------------GLATL-------------------------   50 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-----------------CCCCC-------------------------
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCC-----------------CcCcc-------------------------
Confidence            45566666777788887654  56777777765                 12211                         


Q ss_pred             CCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCC
Q 046017          185 CSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLP  264 (443)
Q Consensus       185 ~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~  264 (443)
                            .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+
T Consensus        51 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  124 (251)
T 3m19_A           51 ------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS  124 (251)
T ss_dssp             ------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ------CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence                  12346788899999999988888777778899999999999998887777788899999999999999876555


Q ss_pred             CCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCcc
Q 046017          265 NELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       265 ~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~l  332 (443)
                      ..+..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|. .+..+++|++|++++|.+..-
T Consensus       125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            667889999999999999998876 58889999999999999998874 788999999999999998644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=4.8e-22  Score=189.80  Aligned_cols=161  Identities=19%  Similarity=0.231  Sum_probs=87.5

Q ss_pred             CcccCCcccceeeccccc-ccc-cccccccCCCCcceeeccCc-cCCCC-CCchhhcCC-CCCcEeccccc--cc-ccCC
Q 046017          193 SSLCMLKSLRFLETIACK-KLE-RLPESLGQLALLCELKMIKC-SSFES-LPSSLCMLK-SLTPLAIIDCK--IF-KRLP  264 (443)
Q Consensus       193 ~~~~~l~~L~~L~ls~n~-~~~-~~p~~l~~l~~L~~L~ls~n-~~~~~-~p~~~~~l~-~L~~L~l~~n~--~~-~~~~  264 (443)
                      ..++.+++|++|++++|. +.+ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|.  +. +.++
T Consensus       136 ~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~  215 (336)
T 2ast_B          136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS  215 (336)
T ss_dssp             HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred             HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence            345556666667766663 332 24555566666666666666 44432 445556666 66666666663  32 2334


Q ss_pred             CCCCCCCCCceEEecCCC-Cc-ccChhccCCCCCCEEEccCCC-CC-CCChhhhCCCCCCeeeCCCCCCCccCcccccCC
Q 046017          265 NELGNLKCLAALIVKGTA-IR-EVPESLGYLSSLAKLELSNNN-LK-RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSP  340 (443)
Q Consensus       265 ~~l~~l~~L~~L~l~~n~-l~-~lp~~~~~l~~L~~L~ls~n~-l~-~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~  340 (443)
                      ..+..+++|++|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++|++|++++|    ++...... 
T Consensus       216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~-  290 (336)
T 2ast_B          216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQL-  290 (336)
T ss_dssp             HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHH-
T ss_pred             HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHH-
Confidence            445556666666666665 44 444556666666666666664 21 01123556666666666666    22211110 


Q ss_pred             CCCcccccccccccCCCCcc
Q 046017          341 TSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       341 ~~lp~~L~~L~l~~N~l~~l  360 (443)
                        +..+++.|++++|.++..
T Consensus       291 --l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          291 --LKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             --HHHHSTTSEESCCCSCCT
T ss_pred             --HHhhCcceEEecccCccc
Confidence              223456666666655443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=1.3e-22  Score=208.78  Aligned_cols=137  Identities=18%  Similarity=0.256  Sum_probs=83.0

Q ss_pred             cCCCcceEEecCCCCCCcC---C------------ccccCCCCCcEEeccccccccccccccC-CCCcccEEEeecC-ch
Q 046017           17 ERPCSCGLRLKNCSSLESF---P------------SSLCVLKSLRSLQIIDCKKFERLLDELG-NLETLLVLRVEGA-AI   79 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~---p------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~l~~n-~l   79 (443)
                      .+++|++|++++|.....+   |            .....+++|++|++++|.+.+..+..+. .+++|++|+++++ .+
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            5777777777776533322   1            1123567777777777776655555554 5677777777776 44


Q ss_pred             hh--hhhhhccCCCCcEEecCCCC--------------CCCCccEEEEeCCC--Cc--ccCccccCCCCCCEEeccCCCC
Q 046017           80 RE--LSQSLGQLALLSELELKNSS--------------EFEYLRVLRVEGAA--IR--ELPESIGKSTLLSELELKNCSE  139 (443)
Q Consensus        80 ~~--lp~~~~~l~~L~~L~ls~~~--------------~l~~L~~L~l~~n~--~~--~lp~~l~~l~~L~~L~l~~n~~  139 (443)
                      +.  ++..+.++++|++|++++|.              .+++|++|++++|.  ++  .++..+..+++|++|++++|..
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            42  55555567777777777663              44577777777765  11  1222223467777777777632


Q ss_pred             C--------CCCCcCEEEccCC
Q 046017          140 L--------KLKSLRRIKMSKC  153 (443)
Q Consensus       140 ~--------~l~~L~~L~l~~~  153 (443)
                      .        .+++|++|+++.+
T Consensus       224 ~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          224 LEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHHHHHHHCTTCSEEECSBC
T ss_pred             HHHHHHHHhcCCcceEcccccc
Confidence            2        5566777765443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=4.2e-22  Score=192.36  Aligned_cols=251  Identities=10%  Similarity=0.040  Sum_probs=176.9

Q ss_pred             EEeccccccccccccccCCCCcccEEEeecCchhhhh-----hhhccCC-CCcEEecCCCCCCCCccEEEEeCCCCccc-
Q 046017           47 SLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-----QSLGQLA-LLSELELKNSSEFEYLRVLRVEGAAIREL-  119 (443)
Q Consensus        47 ~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-----~~~~~l~-~L~~L~ls~~~~l~~L~~L~l~~n~~~~l-  119 (443)
                      +++++.|.+.+.+|..+...++|++|++++|.++..+     ..+..++ +|++|++++              |.++.. 
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--------------N~l~~~~   67 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG--------------NSLGFKN   67 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS--------------SCGGGSC
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC--------------CCCCHHH
Confidence            4678888888888887777778999999999998655     4566655 555555544              666554 


Q ss_pred             CccccCC-----CCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCc
Q 046017          120 PESIGKS-----TLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSS  194 (443)
Q Consensus       120 p~~l~~l-----~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~  194 (443)
                      +..+..+     ++|++|++++|.                 ++..+                           ...+...
T Consensus        68 ~~~l~~~l~~~~~~L~~L~Ls~n~-----------------l~~~~---------------------------~~~l~~~  103 (362)
T 3goz_A           68 SDELVQILAAIPANVTSLNLSGNF-----------------LSYKS---------------------------SDELVKT  103 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSC-----------------GGGSC---------------------------HHHHHHH
T ss_pred             HHHHHHHHhccCCCccEEECcCCc-----------------CChHH---------------------------HHHHHHH
Confidence            3333332     777777777761                 11110                           0111122


Q ss_pred             ccCC-cccceeeccccccccccccc----ccC-CCCcceeeccCccCCCCC----CchhhcCC-CCCcEecccccccccC
Q 046017          195 LCML-KSLRFLETIACKKLERLPES----LGQ-LALLCELKMIKCSSFESL----PSSLCMLK-SLTPLAIIDCKIFKRL  263 (443)
Q Consensus       195 ~~~l-~~L~~L~ls~n~~~~~~p~~----l~~-l~~L~~L~ls~n~~~~~~----p~~~~~l~-~L~~L~l~~n~~~~~~  263 (443)
                      +..+ ++|++|++++|.+.+..+..    +.. .++|++|++++|.+....    +..+..++ +|++|++++|.+.+..
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence            4444 79999999999887655443    334 369999999999887533    34455565 9999999999997655


Q ss_pred             CCC----CCCC-CCCceEEecCCCCcc-----cChhccC-CCCCCEEEccCCCCCCCC-----hhhhCCCCCCeeeCCCC
Q 046017          264 PNE----LGNL-KCLAALIVKGTAIRE-----VPESLGY-LSSLAKLELSNNNLKRTP-----ESLYQLSSLKYLKPFEN  327 (443)
Q Consensus       264 ~~~----l~~l-~~L~~L~l~~n~l~~-----lp~~~~~-l~~L~~L~ls~n~l~~lp-----~~l~~l~~L~~L~ls~n  327 (443)
                      +..    +..+ ++|++|++++|.++.     ++..+.. .++|++|++++|.++..+     ..+..+++|++|++++|
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            433    3344 599999999999986     6766766 459999999999999764     34577899999999999


Q ss_pred             CCCccCcc--------cccCCCCCcccccccccccCCCCcc
Q 046017          328 NSDRIPEY--------LRSSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       328 ~l~~lp~~--------~~~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                      .+..++..        +...     ++|++||+++|.+...
T Consensus       264 ~l~~i~~~~~~~l~~~~~~l-----~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          264 IVKNMSKEQCKALGAAFPNI-----QKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHTTCCHHHHHHHHTTSTTC-----CEEEEECTTSCBCCGG
T ss_pred             CccccCHHHHHHHHHHhccC-----CceEEEecCCCcCCCc
Confidence            96555432        2222     6899999999987654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=1e-19  Score=174.68  Aligned_cols=154  Identities=18%  Similarity=0.146  Sum_probs=112.8

Q ss_pred             CcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc-hhhcC-CCCCcEecccccccccCCCCCCCC
Q 046017          193 SSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS-SLCML-KSLTPLAIIDCKIFKRLPNELGNL  270 (443)
Q Consensus       193 ~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~-~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l  270 (443)
                      ..+..+++|++|++++|.+....+..+....++..|++.++.....++. .+..+ ..++.|++++|++. .++......
T Consensus        98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~  176 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG  176 (350)
T ss_dssp             TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTT
T ss_pred             hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccc
Confidence            4577888999999998877666555666677788888877655555543 44444 36888999998884 466655567


Q ss_pred             CCCceEEecC-CCCcccCh-hccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCC-CCCCccCcccccCCCCCcccc
Q 046017          271 KCLAALIVKG-TAIREVPE-SLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFE-NNSDRIPEYLRSSPTSIPSEL  347 (443)
Q Consensus       271 ~~L~~L~l~~-n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~-n~l~~lp~~~~~~~~~lp~~L  347 (443)
                      ++|++|++.+ |.++.+|. .+..+++|++|++++|+|+.+|.  ..+.+|+.|.+.+ +.++.+|. +..+     ++|
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l-----~~L  248 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPT-LEKL-----VAL  248 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCC-TTTC-----CSC
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCC-chhC-----cCh
Confidence            7889999875 68888875 46788999999999999998886  3466777777766 66788885 3333     578


Q ss_pred             cccccccC
Q 046017          348 RSLNLSVD  355 (443)
Q Consensus       348 ~~L~l~~N  355 (443)
                      +.+++.++
T Consensus       249 ~~l~l~~~  256 (350)
T 4ay9_X          249 MEASLTYP  256 (350)
T ss_dssp             CEEECSCH
T ss_pred             hhCcCCCC
Confidence            88888753

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=1.5e-21  Score=200.94  Aligned_cols=321  Identities=16%  Similarity=0.147  Sum_probs=205.1

Q ss_pred             cCCCcceEEecCCCCCCcCCcccc-CCCCCcEEeccccccccc--cccccCCCCcccEEEeecCchhh-----hhhhhcc
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLC-VLKSLRSLQIIDCKKFER--LLDELGNLETLLVLRVEGAAIRE-----LSQSLGQ   88 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~   88 (443)
                      .+++|++|++++|.+....+..+. .+++|++|++++|...+.  ++..+..+++|++|++++|.++.     ++.....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            578999999999986555555554 689999999999854432  55555688999999999988652     3444446


Q ss_pred             CCCCcEEecCCCC-------------CCCCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCC---------------
Q 046017           89 LALLSELELKNSS-------------EFEYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSE---------------  139 (443)
Q Consensus        89 l~~L~~L~ls~~~-------------~l~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~---------------  139 (443)
                      +++|++|++++|.             .+++|++|++++|. ++.+|..+..+++|++|++..+..               
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            7899999998874             34899999999884 666777677778888887654421               


Q ss_pred             ------------------C-----CCCCcCEEEccCCCCCCC--CC----CCCCCccccccC-cccccccccccCCCCCc
Q 046017          140 ------------------L-----KLKSLRRIKMSKCSNLKR--FP----KIASCNKVGITG-IKRLSSTLRLKNCSSLE  189 (443)
Q Consensus       140 ------------------~-----~l~~L~~L~l~~~~~l~~--~~----~~~~l~~L~l~~-l~~l~~~l~~~~~~~l~  189 (443)
                                        +     .+++|++|++++|. +..  +.    ...+++.|++.+ +.             -.
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~-------------~~  328 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIE-------------DA  328 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGH-------------HH
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccC-------------HH
Confidence                              0     35677777777765 331  11    113444444411 11             01


Q ss_pred             ccCCcccCCcccceeecccc---------cccccccccc-cCCCCcceeeccCccCCCCCCchhh-cCCCCCcEecc--c
Q 046017          190 SLPSSLCMLKSLRFLETIAC---------KKLERLPESL-GQLALLCELKMIKCSSFESLPSSLC-MLKSLTPLAII--D  256 (443)
Q Consensus       190 ~lp~~~~~l~~L~~L~ls~n---------~~~~~~p~~l-~~l~~L~~L~ls~n~~~~~~p~~~~-~l~~L~~L~l~--~  256 (443)
                      .++.....+++|++|+++++         .+.......+ ..+++|++|.++.+.+....+..+. .+++|+.|+++  +
T Consensus       329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            11222234677888877332         2222111122 2367888887776666554444443 57889999988  2


Q ss_pred             ---ccccccCC------CCCCCCCCCceEEecCCCCc-ccChhccC-CCCCCEEEccCCCCCC--CChhhhCCCCCCeee
Q 046017          257 ---CKIFKRLP------NELGNLKCLAALIVKGTAIR-EVPESLGY-LSSLAKLELSNNNLKR--TPESLYQLSSLKYLK  323 (443)
Q Consensus       257 ---n~~~~~~~------~~l~~l~~L~~L~l~~n~l~-~lp~~~~~-l~~L~~L~ls~n~l~~--lp~~l~~l~~L~~L~  323 (443)
                         |...+..|      ..+..+++|++|++++ .++ ..+..+.. +++|+.|++++|.++.  ++.....+++|++|+
T Consensus       409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred             CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence               22223222      1245678899999977 555 22333433 7889999999999873  223236789999999


Q ss_pred             CCCCCCCccC--cccccCCCCCcccccccccccCCC
Q 046017          324 PFENNSDRIP--EYLRSSPTSIPSELRSLNLSVDSG  357 (443)
Q Consensus       324 ls~n~l~~lp--~~~~~~~~~lp~~L~~L~l~~N~l  357 (443)
                      +++|.++...  ..+..+     ++|++|++++|.+
T Consensus       488 L~~n~~~~~~~~~~~~~l-----~~L~~L~l~~~~~  518 (594)
T 2p1m_B          488 IRDCPFGDKALLANASKL-----ETMRSLWMSSCSV  518 (594)
T ss_dssp             EESCSCCHHHHHHTGGGG-----GGSSEEEEESSCC
T ss_pred             CcCCCCcHHHHHHHHHhC-----CCCCEEeeeCCCC
Confidence            9999885322  122222     6899999999876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=1.5e-19  Score=182.98  Aligned_cols=115  Identities=23%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             ccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEec
Q 046017          200 SLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVK  279 (443)
Q Consensus       200 ~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  279 (443)
                      +|++|++++|.+.+ +|.   .+++|+.|++++|.+.+ +|.   .+++|++|++++|.+.+ +|. +.  ++|+.|+++
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS  188 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence            56666666655544 444   45566666666655443 443   34566666666665543 444 33  556666666


Q ss_pred             CCCCcccChhccCCCCC-------CEEEccCCCCCCCChhhhCCCCCCeeeCCCCCC
Q 046017          280 GTAIREVPESLGYLSSL-------AKLELSNNNLKRTPESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       280 ~n~l~~lp~~~~~l~~L-------~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l  329 (443)
                      +|+|+.+|. +..  +|       +.|++++|+|+.+|..+..+++|+.|++++|.+
T Consensus       189 ~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          189 TNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             SSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             CCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence            666665555 332  44       666666666666665555566666666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=7.4e-19  Score=168.73  Aligned_cols=222  Identities=18%  Similarity=0.126  Sum_probs=170.2

Q ss_pred             cEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEE
Q 046017           70 LVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRI  148 (443)
Q Consensus        70 ~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L  148 (443)
                      ++++.++++++++|..+.                +++++|++++|+++.+|. .|.++++|++|++++|           
T Consensus        12 ~~v~C~~~~Lt~iP~~l~----------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-----------   64 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP----------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-----------   64 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC----------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-----------
T ss_pred             CEEEecCCCCCccCcCcC----------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-----------
Confidence            789999999999997652                356777777889999986 4788999999988887           


Q ss_pred             EccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccce-eecccccccccccccccCCCCcce
Q 046017          149 KMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF-LETIACKKLERLPESLGQLALLCE  227 (443)
Q Consensus       149 ~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~-L~ls~n~~~~~~p~~l~~l~~L~~  227 (443)
                           ...+.+|.                               ..|.+++++++ +.+.+|++....|..+..+++|++
T Consensus        65 -----~i~~~i~~-------------------------------~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           65 -----DVLEVIEA-------------------------------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             -----TTCCEECT-------------------------------TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             -----CCCCccCh-------------------------------hHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence                 22222221                               24667777776 455556666666788999999999


Q ss_pred             eeccCccCCCCCCchhhcCCCCCcEecccccccccCCC-CCCCCC-CCceEEecCCCCcccChhccCCCCCCEEEccC-C
Q 046017          228 LKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN-ELGNLK-CLAALIVKGTAIREVPESLGYLSSLAKLELSN-N  304 (443)
Q Consensus       228 L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~-~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~-n  304 (443)
                      |++++|.+....+..+....++..+++.++.....++. .+..+. .+++|++++|+|+.+|.......+|++|++++ |
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC
Confidence            99999988776666666777888899977544455543 455554 68999999999999998888888999999985 8


Q ss_pred             CCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccC-CCCccc
Q 046017          305 NLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVD-SGNSLN  361 (443)
Q Consensus       305 ~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N-~l~~l~  361 (443)
                      .++.+|. .+..+++|++|++++|+|+.+|....       .+|+.|.+.++ .++.+|
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-------~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-------ENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC-------TTCCEEECTTCTTCCCCC
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcCccChhhh-------ccchHhhhccCCCcCcCC
Confidence            8999985 67999999999999999999998532       46666665554 567776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=4.7e-19  Score=179.41  Aligned_cols=139  Identities=25%  Similarity=0.275  Sum_probs=91.5

Q ss_pred             CcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEE
Q 046017          198 LKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALI  277 (443)
Q Consensus       198 l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  277 (443)
                      +++|++|++++|.+.+ +|. +..  +|++|++++|.+.+ +|.   .+++|++|++++|.+.+ +|.   .+++|++|+
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  166 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS  166 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence            4567777777765554 555 443  77777777766655 554   46777777777777644 554   456777777


Q ss_pred             ecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCC-------CeeeCCCCCCCccCcccccCCCCCccccccc
Q 046017          278 VKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSL-------KYLKPFENNSDRIPEYLRSSPTSIPSELRSL  350 (443)
Q Consensus       278 l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L-------~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L  350 (443)
                      +++|.++.+|. +.  ++|+.|++++|+|+.+|. +..  +|       ++|++++|+|+.+|..++.+     ++|+.|
T Consensus       167 Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l-----~~L~~L  235 (571)
T 3cvr_A          167 VRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSL-----DPTCTI  235 (571)
T ss_dssp             CCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGS-----CTTEEE
T ss_pred             CCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcC-----CCCCEE
Confidence            77777777766 44  677777777777777766 443  55       77777777777777766654     567777


Q ss_pred             ccccCCCCc
Q 046017          351 NLSVDSGNS  359 (443)
Q Consensus       351 ~l~~N~l~~  359 (443)
                      ++++|.++.
T Consensus       236 ~L~~N~l~~  244 (571)
T 3cvr_A          236 ILEDNPLSS  244 (571)
T ss_dssp             ECCSSSCCH
T ss_pred             EeeCCcCCC
Confidence            777776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=1.3e-22  Score=206.36  Aligned_cols=109  Identities=24%  Similarity=0.246  Sum_probs=82.6

Q ss_pred             CcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccC
Q 046017          224 LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSN  303 (443)
Q Consensus       224 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~  303 (443)
                      .|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..++.+++|++|++++|.|+.+| .++.+++|+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            47778888776654 565 777788888888887775 67777777888888888888887777 677788888888888


Q ss_pred             CCCCCC--ChhhhCCCCCCeeeCCCCCCCccCccc
Q 046017          304 NNLKRT--PESLYQLSSLKYLKPFENNSDRIPEYL  336 (443)
Q Consensus       304 n~l~~l--p~~l~~l~~L~~L~ls~n~l~~lp~~~  336 (443)
                      |+++++  |..+..+++|+.|++++|+++.+|+..
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            888876  777778888888888888877766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.1e-18  Score=162.96  Aligned_cols=132  Identities=27%  Similarity=0.284  Sum_probs=91.1

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+.+.  ..+..+++|+
T Consensus        86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  159 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  159 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence            4455666666666655443 32 36667777777777766544 2 3566777777777777776443  4566777788


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPE  334 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~  334 (443)
                      +|++++|.++.++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|++...|.
T Consensus       160 ~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          160 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred             EEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence            88888887777665 7777888888888888887764 7778888888888887766554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.6e-18  Score=161.96  Aligned_cols=154  Identities=24%  Similarity=0.218  Sum_probs=133.9

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ + ..+..+++|+
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~  137 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE  137 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCC
Confidence            6788999999999988776543  8899999999999988765 44 58899999999999999865 3 4688899999


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV  354 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~  354 (443)
                      +|++++|+++.+ ..+..+++|+.|++++|+++.++. +..+++|++|++++|+++.+|. +..+     ++|+.|++++
T Consensus       138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l-----~~L~~L~l~~  209 (291)
T 1h6t_A          138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGL-----KNLDVLELFS  209 (291)
T ss_dssp             EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTC-----TTCSEEEEEE
T ss_pred             EEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccC-----CCCCEEECcC
Confidence            999999999988 568899999999999999999887 9999999999999999999876 5554     7999999999


Q ss_pred             CCCCcccC
Q 046017          355 DSGNSLNL  362 (443)
Q Consensus       355 N~l~~l~~  362 (443)
                      |.+...|.
T Consensus       210 n~i~~~~~  217 (291)
T 1h6t_A          210 QECLNKPI  217 (291)
T ss_dssp             EEEECCCE
T ss_pred             CcccCCcc
Confidence            98766544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=3.5e-18  Score=151.41  Aligned_cols=177  Identities=19%  Similarity=0.124  Sum_probs=116.7

Q ss_pred             CCCCCCccCCCCCc----------cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEE
Q 046017            3 PKIPSCNIDGSTGI----------ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVL   72 (443)
Q Consensus         3 ~~~~~c~~~g~~~~----------~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L   72 (443)
                      |....|.|.++.+.          ..+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus         2 p~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (208)
T 2o6s_A            2 PSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL   81 (208)
T ss_dssp             CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence            56667888876653          23467777777777554444456777777777777777655444456777777777


Q ss_pred             EeecCchhhhhh-hhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEEc
Q 046017           73 RVEGAAIRELSQ-SLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIKM  150 (443)
Q Consensus        73 ~l~~n~l~~lp~-~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~l  150 (443)
                      ++++|.++.+|. .+..+++|++|+              +++|.++.+|.. +..+++|++|++++|             
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~--------------L~~N~l~~~~~~~~~~l~~L~~L~l~~N-------------  134 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELA--------------LNTNQLQSLPDGVFDKLTQLKDLRLYQN-------------  134 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEE--------------CCSSCCCCCCTTTTTTCTTCCEEECCSS-------------
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEE--------------cCCCcCcccCHhHhccCCcCCEEECCCC-------------
Confidence            777777776653 345554444444              444666666654 566777777777775             


Q ss_pred             cCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeec
Q 046017          151 SKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKM  230 (443)
Q Consensus       151 ~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l  230 (443)
                          .++.++                               +..+..+++|++|++++|.+.+       .++.|++|++
T Consensus       135 ----~l~~~~-------------------------------~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~  172 (208)
T 2o6s_A          135 ----QLKSVP-------------------------------DGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE  172 (208)
T ss_dssp             ----CCSCCC-------------------------------TTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred             ----ccceeC-------------------------------HHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence                222222                               1235677888899998875543       4567888888


Q ss_pred             cCccCCCCCCchhhcCCC
Q 046017          231 IKCSSFESLPSSLCMLKS  248 (443)
Q Consensus       231 s~n~~~~~~p~~~~~l~~  248 (443)
                      +.|.+.+.+|..++.++.
T Consensus       173 ~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          173 WINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HHHHCTTTBBCTTSSBCT
T ss_pred             HHHhCCceeeccCccccC
Confidence            888888888888776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.8e-18  Score=150.73  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=131.5

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      .+.+++|++|++++|.+. .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            367889999999997766 566 6889999999999998443  335788999999999999999887888899999999


Q ss_pred             eEEecCCCCcc-cChhccCCCCCCEEEccCCC-CCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccc
Q 046017          275 ALIVKGTAIRE-VPESLGYLSSLAKLELSNNN-LKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNL  352 (443)
Q Consensus       275 ~L~l~~n~l~~-lp~~~~~l~~L~~L~ls~n~-l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l  352 (443)
                      +|++++|+++. .+..+..+++|++|++++|+ ++.+| .+..+++|++|++++|+++.++ .+..+     ++|++|++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l-----~~L~~L~l  188 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDF-----PKLNQLYA  188 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGC-----SSCCEEEE
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccC-----CCCCEEEe
Confidence            99999999994 67789999999999999998 88887 6899999999999999999887 45554     68999999


Q ss_pred             ccCCCCc
Q 046017          353 SVDSGNS  359 (443)
Q Consensus       353 ~~N~l~~  359 (443)
                      ++|.++.
T Consensus       189 ~~N~i~~  195 (197)
T 4ezg_A          189 FSQTIGG  195 (197)
T ss_dssp             CBC----
T ss_pred             eCcccCC
Confidence            9998653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=7.2e-18  Score=149.40  Aligned_cols=166  Identities=19%  Similarity=0.212  Sum_probs=120.7

Q ss_pred             CcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC
Q 046017          188 LESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL  267 (443)
Q Consensus       188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l  267 (443)
                      +..+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence            34455433  3578888888887776555667788888888888887776555567788888888888888865555557


Q ss_pred             CCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcc
Q 046017          268 GNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPS  345 (443)
Q Consensus       268 ~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~  345 (443)
                      ..+++|++|++++|+++.++.. +..+++|++|++++|+++.+|. .+..+++|++|++++|.+..-           .+
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----------~~  165 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----------CP  165 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-----------TT
T ss_pred             cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-----------CC
Confidence            7888888888888888877654 5778888888888888887765 367788888888888866421           14


Q ss_pred             cccccccccCCCC-cccCChhh
Q 046017          346 ELRSLNLSVDSGN-SLNLDLNK  366 (443)
Q Consensus       346 ~L~~L~l~~N~l~-~l~~~~~~  366 (443)
                      +|+.|+++.|.++ .+|..+..
T Consensus       166 ~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          166 GIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             TTHHHHHHHHHCTTTBBCTTSS
T ss_pred             CHHHHHHHHHhCCceeeccCcc
Confidence            6778888777544 55655543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=2.5e-18  Score=151.08  Aligned_cols=134  Identities=15%  Similarity=0.159  Sum_probs=117.3

Q ss_pred             cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017          194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL  273 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  273 (443)
                      .+..+++|++|++++|.. .. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        61 ~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            477889999999999844 33 3478899999999999999888788889999999999999999988778889999999


Q ss_pred             ceEEecCCC-CcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCc
Q 046017          274 AALIVKGTA-IREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDR  331 (443)
Q Consensus       274 ~~L~l~~n~-l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~  331 (443)
                      ++|++++|. ++.+| .+..+++|+.|++++|+++.++ .+..+++|++|++++|+++.
T Consensus       139 ~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          139 NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            999999997 88887 5889999999999999999988 68999999999999999864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=8.6e-18  Score=161.95  Aligned_cols=165  Identities=21%  Similarity=0.200  Sum_probs=134.7

Q ss_pred             CcccCCcccCCcccceeeccccccccccccccc-CCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCC
Q 046017          188 LESLPSSLCMLKSLRFLETIACKKLERLPESLG-QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNE  266 (443)
Q Consensus       188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  266 (443)
                      +..+|..+.  +.++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+..
T Consensus        30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  107 (361)
T 2xot_A           30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL  107 (361)
T ss_dssp             CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence            344555443  3689999999888877777777 8999999999999888777778999999999999999997766667


Q ss_pred             CCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCChhh----hCCCCCCeeeCCCCCCCccCcc-cccCC
Q 046017          267 LGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPESL----YQLSSLKYLKPFENNSDRIPEY-LRSSP  340 (443)
Q Consensus       267 l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~~l----~~l~~L~~L~ls~n~l~~lp~~-~~~~~  340 (443)
                      +..+++|++|++++|+|+.+ |..+..+++|+.|+|++|+++.+|..+    ..+++|+.|+|++|+|+.+|.. +..  
T Consensus       108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--  185 (361)
T 2xot_A          108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK--  185 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH--
T ss_pred             hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh--
Confidence            89999999999999999976 567889999999999999999998654    5799999999999999998853 333  


Q ss_pred             CCCcc-cccccccccCCCC
Q 046017          341 TSIPS-ELRSLNLSVDSGN  358 (443)
Q Consensus       341 ~~lp~-~L~~L~l~~N~l~  358 (443)
                        +|. .++.|++++|.+.
T Consensus       186 --l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          186 --LPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             --SCHHHHTTEECCSSCEE
T ss_pred             --ccHhhcceEEecCCCcc
Confidence              222 2588999999765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.3e-17  Score=148.48  Aligned_cols=152  Identities=16%  Similarity=0.119  Sum_probs=114.6

Q ss_pred             cceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017          201 LRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG  280 (443)
Q Consensus       201 L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  280 (443)
                      .+.++.+++ ....+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus        21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            445666653 3445665443  7788888888887777777788888888888888887544445567888888888888


Q ss_pred             CCCcccChh-ccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcc-cccCCCCCcccccccccccCCCC
Q 046017          281 TAIREVPES-LGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEY-LRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       281 n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~-~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      |+++.++.. +..+++|++|++++|+++.+|..+..+++|++|++++|+++.+|.. +..+     ++|++|++++|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL-----SSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC-----TTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCC-----CCCCEEEeeCCCcc
Confidence            888877654 5778888888888888888888888888888888888888888754 3333     68888888888765


Q ss_pred             cc
Q 046017          359 SL  360 (443)
Q Consensus       359 ~l  360 (443)
                      .-
T Consensus       173 c~  174 (229)
T 3e6j_A          173 CE  174 (229)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=4.5e-17  Score=146.50  Aligned_cols=144  Identities=22%  Similarity=0.185  Sum_probs=127.6

Q ss_pred             CCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCC
Q 046017          186 SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN  265 (443)
Q Consensus       186 ~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  265 (443)
                      ..++.+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|++.+..+.
T Consensus        29 ~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  106 (229)
T 3e6j_A           29 KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA  106 (229)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence            45667787654  7999999999999988888999999999999999988665556678999999999999999766666


Q ss_pred             CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCc
Q 046017          266 ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDR  331 (443)
Q Consensus       266 ~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~  331 (443)
                      .+..+++|++|++++|+++.+|..+..+++|+.|++++|+++.+| ..+..+++|+.|++++|.+.-
T Consensus       107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            688999999999999999999999999999999999999999887 468899999999999998853

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.6e-17  Score=169.84  Aligned_cols=128  Identities=27%  Similarity=0.270  Sum_probs=58.9

Q ss_pred             CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017          197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL  276 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  276 (443)
                      .+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+.+.  ..+..+++|+.|
T Consensus        85 ~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  158 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL  158 (605)
T ss_dssp             GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred             cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence            33444444444433322 11 34444444444444444332 1 2344445555555555544332  334445555555


Q ss_pred             EecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCcc
Q 046017          277 IVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       277 ~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~l  332 (443)
                      +|++|.++.+++ +..+++|+.|+|++|+++.+| .+..+++|+.|+|++|++...
T Consensus       159 ~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          159 SLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred             ECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence            555555554433 445555555555555555543 245555555555555555433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=2.8e-17  Score=158.34  Aligned_cols=134  Identities=22%  Similarity=0.163  Sum_probs=107.0

Q ss_pred             CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017          197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL  276 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  276 (443)
                      .+++|++|++++|.+.+..+..|..+++|++|+|++|.+....+..|..+++|++|++++|++.+..+..+..+++|++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            66777888887777766666677888888888888887766666677888888888888888877777788888899999


Q ss_pred             EecCCCCcccChhc----cCCCCCCEEEccCCCCCCCC-hhhhCCCC--CCeeeCCCCCCC
Q 046017          277 IVKGTAIREVPESL----GYLSSLAKLELSNNNLKRTP-ESLYQLSS--LKYLKPFENNSD  330 (443)
Q Consensus       277 ~l~~n~l~~lp~~~----~~l~~L~~L~ls~n~l~~lp-~~l~~l~~--L~~L~ls~n~l~  330 (443)
                      ++++|+|+.+|..+    ..+++|+.|+|++|+|+.+| ..+..++.  ++.|++++|.+.
T Consensus       142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            99999988888765    56889999999999999887 46777776  488999998874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.8e-17  Score=167.18  Aligned_cols=155  Identities=24%  Similarity=0.216  Sum_probs=134.5

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+.+ +| .+..+++|+.|++++|.+.+ + ..+..+++|+
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~  134 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE  134 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCS
T ss_pred             HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccC
Confidence            7788999999999988776544  8899999999999998765 44 68899999999999999865 3 4588999999


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV  354 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~  354 (443)
                      .|+|++|.++.+ ..+..+++|+.|+|++|++..++. +..+++|+.|+|++|+|+.+|. +..+     ++|+.|++++
T Consensus       135 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~-l~~l-----~~L~~L~L~~  206 (605)
T 1m9s_A          135 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGL-----KNLDVLELFS  206 (605)
T ss_dssp             EEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTC-----TTCSEEECCS
T ss_pred             EEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH-HccC-----CCCCEEEccC
Confidence            999999999988 568999999999999999998877 9999999999999999998864 5554     7999999999


Q ss_pred             CCCCcccCC
Q 046017          355 DSGNSLNLD  363 (443)
Q Consensus       355 N~l~~l~~~  363 (443)
                      |.+...|..
T Consensus       207 N~l~~~p~~  215 (605)
T 1m9s_A          207 QECLNKPIN  215 (605)
T ss_dssp             EEEECCCCC
T ss_pred             CcCcCCccc
Confidence            977665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=7.7e-17  Score=144.05  Aligned_cols=150  Identities=19%  Similarity=0.318  Sum_probs=110.3

Q ss_pred             ceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCC
Q 046017          202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT  281 (443)
Q Consensus       202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  281 (443)
                      +.++.+++. ...+|..+.  +.|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            455666543 334555443  57788888887776655667777888888888888887766777888888888888888


Q ss_pred             CCcccChh-ccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcc-cccCCCCCcccccccccccCCCC
Q 046017          282 AIREVPES-LGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEY-LRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       282 ~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~-~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      .|+.+|.. +..+++|++|++++|+++.++ ..+..+++|++|++++|+++.++.. +..+     ++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-----RAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC-----CCCCEEEeCCCCcC
Confidence            88877755 467888888888888888764 5678888888888888888877764 3333     57888888888665


Q ss_pred             c
Q 046017          359 S  359 (443)
Q Consensus       359 ~  359 (443)
                      .
T Consensus       166 c  166 (220)
T 2v9t_B          166 C  166 (220)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=7.4e-17  Score=144.17  Aligned_cols=143  Identities=17%  Similarity=0.206  Sum_probs=125.3

Q ss_pred             CCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCC
Q 046017          186 SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN  265 (443)
Q Consensus       186 ~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  265 (443)
                      ..++.+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+.
T Consensus        21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~   98 (220)
T 2v9t_B           21 KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS   98 (220)
T ss_dssp             SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence            34667777654  6899999999988877777899999999999999999888889999999999999999999755455


Q ss_pred             CCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC
Q 046017          266 ELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       266 ~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~  330 (443)
                      .+..+++|++|++++|+++.+ |..+..+++|+.|++++|+++.++. .+..+++|++|++++|.+.
T Consensus        99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            678899999999999999977 5678899999999999999998874 5889999999999999884

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.71  E-value=1.9e-17  Score=141.47  Aligned_cols=133  Identities=23%  Similarity=0.235  Sum_probs=77.1

Q ss_pred             CCcceeeccCccCC-CCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc-cChhccCCCCCCEEE
Q 046017          223 ALLCELKMIKCSSF-ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE-VPESLGYLSSLAKLE  300 (443)
Q Consensus       223 ~~L~~L~ls~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~  300 (443)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555544 34555555556666666666655432  445556666666666666664 555555566666666


Q ss_pred             ccCCCCCCCC--hhhhCCCCCCeeeCCCCCCCccCc----ccccCCCCCcccccccccccCCCCcccC
Q 046017          301 LSNNNLKRTP--ESLYQLSSLKYLKPFENNSDRIPE----YLRSSPTSIPSELRSLNLSVDSGNSLNL  362 (443)
Q Consensus       301 ls~n~l~~lp--~~l~~l~~L~~L~ls~n~l~~lp~----~~~~~~~~lp~~L~~L~l~~N~l~~l~~  362 (443)
                      +++|+++.+|  ..+..+++|++|++++|.++.+|.    .+..+     ++|++|++++|.+..+|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-----PQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-----SSCCEETTEETTSCBCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-----ccCcEecCCCCChhhccc
Confidence            6666666654  456666666666666666665554    33332     466666666666655554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=143.16  Aligned_cols=150  Identities=19%  Similarity=0.230  Sum_probs=111.7

Q ss_pred             ceeecccccccccccccccCCCCcceeeccCccCCCCCC-chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017          202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP-SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG  280 (443)
Q Consensus       202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  280 (443)
                      +.++++++.+. .+|..+.  +.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            46777775543 4665543  456788888877766544 3477888888888888888766666788888888888888


Q ss_pred             CCCcccCh-hccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCCCcc-CcccccCCCCCcccccccccccCCC
Q 046017          281 TAIREVPE-SLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNSDRI-PEYLRSSPTSIPSELRSLNLSVDSG  357 (443)
Q Consensus       281 n~l~~lp~-~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l~~l-p~~~~~~~~~lp~~L~~L~l~~N~l  357 (443)
                      |.++.++. .+..+++|++|++++|+++.+ |..+..+++|++|++++|+++.+ |..+..+     ++|++|++++|.+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l  165 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL-----HSLSTLNLLANPF  165 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC-----TTCCEEECCSCCE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC-----CCCCEEEecCcCC
Confidence            88887654 477888888888888888876 56788888888888888888777 4555444     6888888888866


Q ss_pred             Cc
Q 046017          358 NS  359 (443)
Q Consensus       358 ~~  359 (443)
                      ..
T Consensus       166 ~c  167 (220)
T 2v70_A          166 NC  167 (220)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=8e-18  Score=154.72  Aligned_cols=131  Identities=21%  Similarity=0.250  Sum_probs=75.2

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+ +|... . ++|++|++++|++.+ ++ .+..+++|+
T Consensus        59 l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~  131 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLE  131 (263)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCC
T ss_pred             HhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCccccc
Confidence            444555555555555444322 2 5555666666666655443 22221 2 566666666666543 22 355666666


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPE  334 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~  334 (443)
                      +|++++|+++.++ .+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.+...|.
T Consensus       132 ~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          132 ILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             EEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             EEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence            6666666666665 456666666666666666666 446666666666666666655554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=5.8e-17  Score=148.94  Aligned_cols=160  Identities=21%  Similarity=0.191  Sum_probs=132.8

Q ss_pred             CcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC
Q 046017          188 LESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL  267 (443)
Q Consensus       188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l  267 (443)
                      +..++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|++.+ ++...
T Consensus        31 i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~  104 (263)
T 1xeu_A           31 VTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP  104 (263)
T ss_dssp             TTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC
T ss_pred             ccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc
Confidence            34444 4678899999999998655 455 688899999999999887654 44 8899999999999999855 55433


Q ss_pred             CCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccc
Q 046017          268 GNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSEL  347 (443)
Q Consensus       268 ~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L  347 (443)
                       . ++|++|++++|+++.++ .+..+++|+.|++++|+++.++ .+..+++|++|++++|+++.+ ..+..+     ++|
T Consensus       105 -~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l-----~~L  174 (263)
T 1xeu_A          105 -S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRL-----KKV  174 (263)
T ss_dssp             -C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTC-----CCC
T ss_pred             -c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccC-----CCC
Confidence             3 89999999999999886 4889999999999999999987 689999999999999999888 445444     689


Q ss_pred             cccccccCCCCcccCC
Q 046017          348 RSLNLSVDSGNSLNLD  363 (443)
Q Consensus       348 ~~L~l~~N~l~~l~~~  363 (443)
                      +.|++++|.++..|..
T Consensus       175 ~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          175 NWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             CEEEEEEEEEECCCEE
T ss_pred             CEEeCCCCcccCCccc
Confidence            9999999987766543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=6.1e-17  Score=138.29  Aligned_cols=137  Identities=23%  Similarity=0.318  Sum_probs=123.8

Q ss_pred             CCcccceeeccccccc-ccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCce
Q 046017          197 MLKSLRFLETIACKKL-ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA  275 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  275 (443)
                      ..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4478999999999887 68888889999999999999987654  67889999999999999998777777777999999


Q ss_pred             EEecCCCCcccC--hhccCCCCCCEEEccCCCCCCCCh----hhhCCCCCCeeeCCCCCCCccCcc
Q 046017          276 LIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRTPE----SLYQLSSLKYLKPFENNSDRIPEY  335 (443)
Q Consensus       276 L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~lp~----~l~~l~~L~~L~ls~n~l~~lp~~  335 (443)
                      |++++|.++.+|  ..+..+++|+.|++++|.++.+|.    .+..+++|++|++++|.+.++|..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            999999999876  688999999999999999999886    789999999999999999998874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=2.2e-16  Score=141.02  Aligned_cols=129  Identities=16%  Similarity=0.126  Sum_probs=74.2

Q ss_pred             cceeeccccccccccc-ccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEec
Q 046017          201 LRFLETIACKKLERLP-ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVK  279 (443)
Q Consensus       201 L~~L~ls~n~~~~~~p-~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  279 (443)
                      +++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            3455555544444322 234555555555655555554444455556666666666666544444445566666666666


Q ss_pred             CCCCccc-ChhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCC
Q 046017          280 GTAIREV-PESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       280 ~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l  329 (443)
                      +|+++.+ |..+..+++|++|++++|+++.+ |..+..+++|++|++++|.+
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            6666644 44555666666666666666655 45566666666666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=6e-19  Score=179.36  Aligned_cols=173  Identities=24%  Similarity=0.158  Sum_probs=139.3

Q ss_pred             CCcccCCcccCCcccceeeccccc-------------ccccccccccCCCCcceee-ccCccCCCCCCc------hhhc-
Q 046017          187 SLESLPSSLCMLKSLRFLETIACK-------------KLERLPESLGQLALLCELK-MIKCSSFESLPS------SLCM-  245 (443)
Q Consensus       187 ~l~~lp~~~~~l~~L~~L~ls~n~-------------~~~~~p~~l~~l~~L~~L~-ls~n~~~~~~p~------~~~~-  245 (443)
                      .++.+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+. .++.      .+.. 
T Consensus       360 ~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l  438 (567)
T 1dce_A          360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLRSKFLLENSVLKM  438 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHH
T ss_pred             hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhhhhhhhccccccc
Confidence            345677778888889988886654             4556677778888888888 5544221 1111      1111 


Q ss_pred             -CCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeC
Q 046017          246 -LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP  324 (443)
Q Consensus       246 -l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~l  324 (443)
                       ...|+.|++++|.+.+ +|. ++.+++|+.|++++|.|+.+|..++.+++|+.|++++|+++++| .+..+++|++|++
T Consensus       439 ~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          439 EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             CccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence             2369999999999865 776 99999999999999999999999999999999999999999998 7999999999999


Q ss_pred             CCCCCCcc--CcccccCCCCCcccccccccccCCCCcccCChhhhh
Q 046017          325 FENNSDRI--PEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLS  368 (443)
Q Consensus       325 s~n~l~~l--p~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~  368 (443)
                      ++|+|+.+  |..+..+     ++|+.|++++|.++.+|.....+.
T Consensus       516 s~N~l~~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~~~~~~l~  556 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSC-----PRLVLLNLQGNSLCQEEGIQERLA  556 (567)
T ss_dssp             CSSCCCSSSTTGGGGGC-----TTCCEEECTTSGGGGSSSCTTHHH
T ss_pred             CCCCCCCCCCcHHHhcC-----CCCCEEEecCCcCCCCccHHHHHH
Confidence            99999888  8888876     799999999999988877654433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=3.3e-17  Score=171.60  Aligned_cols=227  Identities=19%  Similarity=0.137  Sum_probs=107.8

Q ss_pred             CCccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccc-----cccccccccccCCCCcccEEEeecCchhh
Q 046017            7 SCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIID-----CKKFERLLDELGNLETLLVLRVEGAAIRE   81 (443)
Q Consensus         7 ~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~-----n~~~~~~p~~~~~l~~L~~L~l~~n~l~~   81 (443)
                      ...|.+... ..++++.|++.++.+ ...+..+.....|+.+.+..     |. ....+..+..++.|+.|+|++|.+..
T Consensus       162 ~~~~~~~~~-s~~~~~~l~L~~n~~-~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~~  238 (727)
T 4b8c_D          162 SGTATNSAV-STPLTPKIELFANGK-DEANQALLQHKKLSQYSIDEDDDIENR-MVMPKDSKYDDQLWHALDLSNLQIFN  238 (727)
T ss_dssp             ---------------------------------------------------------------CCCCCCEEECTTSCCSC
T ss_pred             cccCCCcee-cCCccceEEeeCCCC-CcchhhHhhcCccCcccccCccccccc-eecChhhhccCCCCcEEECCCCCCCC
Confidence            345655443 346789999988874 33454443334444433332     22 22457778899999999999999999


Q ss_pred             hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCC
Q 046017           82 LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPK  161 (443)
Q Consensus        82 lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~  161 (443)
                      +|..+..+++|++|+|++              |.++.+|..+.++++|++|+|++|.                 +     
T Consensus       239 l~~~~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-----------------l-----  282 (727)
T 4b8c_D          239 ISANIFKYDFLTRLYLNG--------------NSLTELPAEIKNLSNLRVLDLSHNR-----------------L-----  282 (727)
T ss_dssp             CCGGGGGCCSCSCCBCTT--------------SCCSCCCGGGGGGTTCCEEECTTSC-----------------C-----
T ss_pred             CChhhcCCCCCCEEEeeC--------------CcCcccChhhhCCCCCCEEeCcCCc-----------------C-----
Confidence            988777777666666665              6677889888888888888888861                 1     


Q ss_pred             CCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc
Q 046017          162 IASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS  241 (443)
Q Consensus       162 ~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~  241 (443)
                                                 ..+|..++.+++|++|+|++|.+ +.+|..|+.+++|++|+|++|.+.+.+|.
T Consensus       283 ---------------------------~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          283 ---------------------------TSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             ---------------------------SSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             ---------------------------CccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChH
Confidence                                       24556678888899999988765 47788888888999999999888888777


Q ss_pred             hhhcCCC-CCcEecccccccccCCCCCCCCCCCceEEecCC--------CCc-ccChhccCCCCCCEEEccCCCC
Q 046017          242 SLCMLKS-LTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT--------AIR-EVPESLGYLSSLAKLELSNNNL  306 (443)
Q Consensus       242 ~~~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n--------~l~-~lp~~~~~l~~L~~L~ls~n~l  306 (443)
                      .+..+.. +..+++++|.+.+.+|.      .|+.|+++.|        .+. ..+..+..+..+....+++|-+
T Consensus       335 ~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          335 ILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CC
T ss_pred             HHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence            7655422 23467888888777665      3455566655        111 1122233444555556666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=1.5e-16  Score=132.94  Aligned_cols=124  Identities=21%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             CCcceeeccCccCC-CCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc-cChhccCCCCCCEEE
Q 046017          223 ALLCELKMIKCSSF-ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE-VPESLGYLSSLAKLE  300 (443)
Q Consensus       223 ~~L~~L~ls~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~  300 (443)
                      ++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555444 34454445555555555555555332  445555666666666666654 555555566666666


Q ss_pred             ccCCCCCCCC--hhhhCCCCCCeeeCCCCCCCccCc----ccccCCCCCcccccccccc
Q 046017          301 LSNNNLKRTP--ESLYQLSSLKYLKPFENNSDRIPE----YLRSSPTSIPSELRSLNLS  353 (443)
Q Consensus       301 ls~n~l~~lp--~~l~~l~~L~~L~ls~n~l~~lp~----~~~~~~~~lp~~L~~L~l~  353 (443)
                      +++|+++.+|  ..+..+++|++|++++|+++.+|.    .+..+     ++|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL-----PQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC-----TTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC-----CCcccccCC
Confidence            6666666543  455666666666666666655554    23332     456666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.65  E-value=3e-16  Score=131.11  Aligned_cols=128  Identities=20%  Similarity=0.225  Sum_probs=111.9

Q ss_pred             CCcccceeeccccccc-ccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCce
Q 046017          197 MLKSLRFLETIACKKL-ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA  275 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  275 (443)
                      ..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            4478999999999887 68888889999999999999887665  67888999999999999997767777777999999


Q ss_pred             EEecCCCCcccC--hhccCCCCCCEEEccCCCCCCCCh----hhhCCCCCCeeeCCC
Q 046017          276 LIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRTPE----SLYQLSSLKYLKPFE  326 (443)
Q Consensus       276 L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~lp~----~l~~l~~L~~L~ls~  326 (443)
                      |++++|.++.++  ..+..+++|++|++++|.++.+|.    .+..+++|++|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999765  778999999999999999998875    688999999999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=7.7e-17  Score=168.83  Aligned_cols=125  Identities=22%  Similarity=0.210  Sum_probs=61.3

Q ss_pred             cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017          194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL  273 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  273 (443)
                      .+..+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+..+++|++|+|++|.+ +.+|..++.+++|
T Consensus       242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L  318 (727)
T 4b8c_D          242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNL  318 (727)
T ss_dssp             GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTC
T ss_pred             hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCc
Confidence            3445556666666665544 55555566666666666665544 4555566666666666666655 3455556666666


Q ss_pred             ceEEecCCCCc-ccChhccCCC-CCCEEEccCCCCCC-CChhhhCCCCCCeeeCCCC
Q 046017          274 AALIVKGTAIR-EVPESLGYLS-SLAKLELSNNNLKR-TPESLYQLSSLKYLKPFEN  327 (443)
Q Consensus       274 ~~L~l~~n~l~-~lp~~~~~l~-~L~~L~ls~n~l~~-lp~~l~~l~~L~~L~ls~n  327 (443)
                      ++|+|++|.|+ .+|..+..+. .+..|++++|.++. +|      ..|+.|+++.|
T Consensus       319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            66666666555 2333332211 11234555555552 23      24566666665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=3e-15  Score=128.80  Aligned_cols=132  Identities=23%  Similarity=0.241  Sum_probs=101.8

Q ss_pred             ccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhc-cCCCCCC
Q 046017          219 LGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL-GYLSSLA  297 (443)
Q Consensus       219 l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~  297 (443)
                      +..+++|+.|++++|.+. .+|......++|++|++++|.+.+.  ..+..+++|++|++++|.++.+|+.+ ..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            445677888888887665 3454333334888888888887653  56788888999999999888887554 7888999


Q ss_pred             EEEccCCCCCCCCh--hhhCCCCCCeeeCCCCCCCccCcc----cccCCCCCcccccccccccCCCC
Q 046017          298 KLELSNNNLKRTPE--SLYQLSSLKYLKPFENNSDRIPEY----LRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       298 ~L~ls~n~l~~lp~--~l~~l~~L~~L~ls~n~l~~lp~~----~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      +|++++|+++.+|.  .+..+++|++|++++|.++.+|..    +..+     ++|+.||+++|...
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l-----~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV-----PQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC-----TTCSEETTEECCHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC-----CccceeCCCcCCHH
Confidence            99999999988886  788889999999999999888875    5554     68899998887543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=1.4e-14  Score=126.47  Aligned_cols=125  Identities=18%  Similarity=0.174  Sum_probs=74.1

Q ss_pred             ceeecccccccccccccccCCCCcceeeccCccCCCCCCc-hhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017          202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS-SLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG  280 (443)
Q Consensus       202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  280 (443)
                      ++++++++.+ +.+|..+.  ..+++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5566666444 44555443  2666666666655444332 356666666666666666655566666666666666666


Q ss_pred             CCCcccCh-hccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCC
Q 046017          281 TAIREVPE-SLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       281 n~l~~lp~-~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l  329 (443)
                      |+++.++. .+..+++|++|++++|+++.+ |..+..+++|++|++++|.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            66665443 355566666666666666644 44555666666666666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=4.6e-15  Score=127.60  Aligned_cols=134  Identities=16%  Similarity=0.150  Sum_probs=114.2

Q ss_pred             ccCCcccceeecccccccccccccccCC-CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQL-ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL  273 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l-~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  273 (443)
                      +..+++|++|++++|.+. .+|. +..+ ++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            567889999999998776 4554 4444 4999999999987764  578899999999999999965433445889999


Q ss_pred             ceEEecCCCCcccCh--hccCCCCCCEEEccCCCCCCCChh----hhCCCCCCeeeCCCCCCCcc
Q 046017          274 AALIVKGTAIREVPE--SLGYLSSLAKLELSNNNLKRTPES----LYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       274 ~~L~l~~n~l~~lp~--~~~~l~~L~~L~ls~n~l~~lp~~----l~~l~~L~~L~ls~n~l~~l  332 (443)
                      ++|++++|.++.+|.  .+..+++|+.|++++|.+..+|..    +..+++|++|++++|.+.+.
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            999999999999987  788999999999999999999875    89999999999999987543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=8.9e-14  Score=121.35  Aligned_cols=104  Identities=26%  Similarity=0.339  Sum_probs=48.3

Q ss_pred             CCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCC
Q 046017          248 SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPF  325 (443)
Q Consensus       248 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls  325 (443)
                      +|++|++++|.+. .+|..+..+++|++|++++|.|+.++ ..+..+++|++|++++|+++.++ ..+..+++|++|+++
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            3444444444442 33344444444444444444444333 23444455555555555555443 234555555555555


Q ss_pred             CCCCCccCccc-ccCCCCCcccccccccccCCC
Q 046017          326 ENNSDRIPEYL-RSSPTSIPSELRSLNLSVDSG  357 (443)
Q Consensus       326 ~n~l~~lp~~~-~~~~~~lp~~L~~L~l~~N~l  357 (443)
                      +|+|+.+|... ..+     ++|+.|++++|.+
T Consensus       111 ~N~l~~~~~~~~~~l-----~~L~~L~L~~N~~  138 (193)
T 2wfh_A          111 GNDISVVPEGAFNDL-----SALSHLAIGANPL  138 (193)
T ss_dssp             SSCCCBCCTTTTTTC-----TTCCEEECCSSCE
T ss_pred             CCCCCeeChhhhhcC-----ccccEEEeCCCCe
Confidence            55555554432 222     3555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=6.4e-14  Score=122.22  Aligned_cols=118  Identities=19%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             cccCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC
Q 046017          189 ESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL  267 (443)
Q Consensus       189 ~~lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l  267 (443)
                      +.+|..+..  +|++|++++|.+.+..+. .++.+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+
T Consensus        21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~   98 (192)
T 1w8a_A           21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF   98 (192)
T ss_dssp             SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred             CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh
Confidence            344544433  899999999887665553 48899999999999999998889999999999999999999988878889


Q ss_pred             CCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCC
Q 046017          268 GNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKR  308 (443)
Q Consensus       268 ~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~  308 (443)
                      ..+++|++|++++|+++.+ |..+..+++|++|++++|.+..
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            9999999999999999955 7788999999999999999984

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=1.1e-16  Score=140.57  Aligned_cols=134  Identities=21%  Similarity=0.127  Sum_probs=111.2

Q ss_pred             ccCCcccceeecccccccccccc------cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCC
Q 046017          195 LCMLKSLRFLETIACKKLERLPE------SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELG  268 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~------~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~  268 (443)
                      +.....++.++++.+.+.+.+|.      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            44556777888888777777665      78889999999999987765 66 7888999999999999885 6777777


Q ss_pred             CCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh--hhhCCCCCCeeeCCCCCCCcc
Q 046017          269 NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE--SLYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       269 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~--~l~~l~~L~~L~ls~n~l~~l  332 (443)
                      .+++|++|++++|+++.+| .+..+++|++|++++|+++.++.  .+..+++|++|++++|.+...
T Consensus        91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            7789999999999999887 57888899999999999998764  788899999999999988544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.3e-14  Score=137.77  Aligned_cols=88  Identities=14%  Similarity=0.191  Sum_probs=47.9

Q ss_pred             CCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCC-EEEccCCCCCCCC-hhhhCCCCCCee
Q 046017          246 LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLA-KLELSNNNLKRTP-ESLYQLSSLKYL  322 (443)
Q Consensus       246 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~-~L~ls~n~l~~lp-~~l~~l~~L~~L  322 (443)
                      +++|+.+++++|++...-...|.++++|+.+++.+| ++.++ .+|..+++|+ .+++.+ .++.++ ..|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            455566666555553333334555556666666554 44443 2345555565 666655 455543 455566666666


Q ss_pred             eCCCCCCCccCcc
Q 046017          323 KPFENNSDRIPEY  335 (443)
Q Consensus       323 ~ls~n~l~~lp~~  335 (443)
                      ++++|+++.|+..
T Consensus       303 ~l~~n~i~~I~~~  315 (329)
T 3sb4_A          303 LATGDKITTLGDE  315 (329)
T ss_dssp             EECSSCCCEECTT
T ss_pred             EeCCCccCccchh
Confidence            6656666555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=2.2e-13  Score=117.11  Aligned_cols=109  Identities=22%  Similarity=0.280  Sum_probs=63.0

Q ss_pred             CCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeC
Q 046017          247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKP  324 (443)
Q Consensus       247 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~l  324 (443)
                      ++|++|++++|++.+..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+|. .+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            4556666666655443334455566666666666666655433 4556666666666666666553 3456666666666


Q ss_pred             CCCCCCccCcccccCCCCCcccccccccccCCCCc
Q 046017          325 FENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       325 s~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~  359 (443)
                      ++|+++.+|......    .++|++|++++|.+..
T Consensus       108 ~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDR----LTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCSCCCTTTTTT----CTTCCEEECCSSCBCC
T ss_pred             cCCcceEeCHHHhcC----CcccCEEEecCCCeec
Confidence            666666666543221    1466666666665543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=2.4e-13  Score=118.57  Aligned_cols=125  Identities=23%  Similarity=0.244  Sum_probs=102.0

Q ss_pred             ceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCC
Q 046017          202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT  281 (443)
Q Consensus       202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  281 (443)
                      +.++++++.+ ..+|..+.  ++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGL-KVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCC-SSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCC-CcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4677777554 45665543  57889999987765 67788888999999999999987766677889999999999999


Q ss_pred             CCcccCh-hccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC
Q 046017          282 AIREVPE-SLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       282 ~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~  330 (443)
                      .++.++. .+..+++|+.|++++|+++.+|. .+..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            9997764 58889999999999999998875 5788999999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=9.8e-14  Score=131.76  Aligned_cols=125  Identities=11%  Similarity=0.032  Sum_probs=86.6

Q ss_pred             CcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc-eE
Q 046017          198 LKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA-AL  276 (443)
Q Consensus       198 l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L  276 (443)
                      ..++..+.+.++-....+......+++|+.+++++|.+....+..|..+++|+.+++.+| +...-+..|.++++|+ .+
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence            345555655543211111111123678888888887766555567888888888888876 5444445678888888 88


Q ss_pred             EecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeC
Q 046017          277 IVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKP  324 (443)
Q Consensus       277 ~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~l  324 (443)
                      ++.+ +++.++ .+|..+++|+.+++++|+++.++ ..|.++++|+.++.
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            8887 777664 66788888999998888888886 47888888888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=4.6e-13  Score=115.10  Aligned_cols=129  Identities=19%  Similarity=0.196  Sum_probs=101.2

Q ss_pred             cceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017          201 LRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG  280 (443)
Q Consensus       201 L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  280 (443)
                      .+.++++++.+ ..+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCC-SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCC-ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            45677766543 3455433  36888888888887766566678889999999999988665555678899999999999


Q ss_pred             CCCcccChh-ccCCCCCCEEEccCCCCCCCChh-hhCCCCCCeeeCCCCCCCcc
Q 046017          281 TAIREVPES-LGYLSSLAKLELSNNNLKRTPES-LYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       281 n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~~-l~~l~~L~~L~ls~n~l~~l  332 (443)
                      |+++.+|.. +..+++|++|++++|+++.+|.. +..+++|++|++++|.+...
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            999977764 67889999999999999988864 57899999999999988543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=4.3e-12  Score=123.41  Aligned_cols=153  Identities=12%  Similarity=0.139  Sum_probs=101.8

Q ss_pred             cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccccc-----ccCCCCCC
Q 046017          194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIF-----KRLPNELG  268 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-----~~~~~~l~  268 (443)
                      .|.++++|+.+++.. +....-..+|.+ .+|+.+.+.. .+...-...|..+++|+.+++.++...     ..-...|.
T Consensus       221 aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~  297 (401)
T 4fdw_A          221 AFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE  297 (401)
T ss_dssp             TTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred             HhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence            366677777777765 233222344555 6777777754 344444566777888888888776553     23345677


Q ss_pred             CCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccc
Q 046017          269 NLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSE  346 (443)
Q Consensus       269 ~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~  346 (443)
                      ++++|+.+++. +.++.++ ..|..+++|+.+.+..+ ++.+. ..|.++ +|+.+++++|.+..++...+..   +|..
T Consensus       298 ~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~---~~~~  371 (401)
T 4fdw_A          298 GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG---FPDD  371 (401)
T ss_dssp             TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC---SCTT
T ss_pred             CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC---CCCC
Confidence            88888888887 4477664 45677888888888554 66664 567788 8888888888887777654433   5566


Q ss_pred             ccccccccC
Q 046017          347 LRSLNLSVD  355 (443)
Q Consensus       347 L~~L~l~~N  355 (443)
                      ++.|++-.+
T Consensus       372 l~~l~vp~~  380 (401)
T 4fdw_A          372 ITVIRVPAE  380 (401)
T ss_dssp             CCEEEECGG
T ss_pred             ccEEEeCHH
Confidence            777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=4.5e-16  Score=136.68  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=115.7

Q ss_pred             ccCCCCcceeeccCccCCCCCCc------hhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccC
Q 046017          219 LGQLALLCELKMIKCSSFESLPS------SLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGY  292 (443)
Q Consensus       219 l~~l~~L~~L~ls~n~~~~~~p~------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~  292 (443)
                      +.....++.++++.+.+.+.+|.      .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++.+|..+..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~   91 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV   91 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence            44556777778888777777666      89999999999999999865 77 788999999999999999999988888


Q ss_pred             CCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCc--ccccCCCCCcccccccccccCCCCcc
Q 046017          293 LSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPE--YLRSSPTSIPSELRSLNLSVDSGNSL  360 (443)
Q Consensus       293 l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~--~~~~~~~~lp~~L~~L~l~~N~l~~l  360 (443)
                      +++|++|++++|+++.+| .+..+++|++|++++|+++.++.  .+..+     ++|++|++++|.+...
T Consensus        92 ~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l-----~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           92 ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL-----DKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTT-----TTCSEEEECSCHHHHH
T ss_pred             CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcC-----CCCCEEEecCCccccc
Confidence            899999999999999987 68899999999999999998775  45554     7999999999976554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2.2e-12  Score=110.41  Aligned_cols=107  Identities=19%  Similarity=0.266  Sum_probs=61.6

Q ss_pred             CcEecccccccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCChh-hhCCCCCCeeeCCCC
Q 046017          250 TPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPES-LYQLSSLKYLKPFEN  327 (443)
Q Consensus       250 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~~-l~~l~~L~~L~ls~n  327 (443)
                      +.+++++|.+ +.+|..+.  ++|++|++++|+|+.+ |..+..+++|++|+|++|+++.+|.. +..+++|++|++++|
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4455555554 34454433  5566666666666654 34455666666666666666666543 456666666666666


Q ss_pred             CCCccCcc-cccCCCCCcccccccccccCCCCcccCCh
Q 046017          328 NSDRIPEY-LRSSPTSIPSELRSLNLSVDSGNSLNLDL  364 (443)
Q Consensus       328 ~l~~lp~~-~~~~~~~lp~~L~~L~l~~N~l~~l~~~~  364 (443)
                      +|+.+|.. +..+     ++|++|++++|.+...+..+
T Consensus        92 ~l~~l~~~~~~~l-----~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           92 HLKSIPRGAFDNL-----KSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             CCCCCCTTTTTTC-----TTCSEEECCSSCBCTTBGGG
T ss_pred             ccceeCHHHhccc-----cCCCEEEeCCCCcccccccH
Confidence            66666654 3332     46666666666665554433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2.3e-12  Score=110.33  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=84.6

Q ss_pred             ceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCC
Q 046017          226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNN  304 (443)
Q Consensus       226 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n  304 (443)
                      +.++++++.+ +.+|..+.  ++|++|++++|++.+..|..+..+++|++|++++|+|+.+|.. +..+++|++|++++|
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            5677777554 45665543  7788888888888776677788888888888888888888765 478899999999999


Q ss_pred             CCCCCChh-hhCCCCCCeeeCCCCCCCccCcc
Q 046017          305 NLKRTPES-LYQLSSLKYLKPFENNSDRIPEY  335 (443)
Q Consensus       305 ~l~~lp~~-l~~l~~L~~L~ls~n~l~~lp~~  335 (443)
                      +++.+|.. +..+++|++|++++|.+...+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            99988864 88899999999999988766653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=6.5e-12  Score=107.10  Aligned_cols=84  Identities=23%  Similarity=0.317  Sum_probs=39.5

Q ss_pred             CCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcc-cccCCCCCcccc
Q 046017          271 KCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEY-LRSSPTSIPSEL  347 (443)
Q Consensus       271 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~-~~~~~~~lp~~L  347 (443)
                      ++|++|++++|+|+.+ |..+..+++|++|++++|+++.+|. .+..+++|++|++++|+|+.+|.. +..+     ++|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL-----KSL  104 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCC-----CCC
Confidence            4444455555544444 2334444555555555555554443 234455555555555555444443 2222     345


Q ss_pred             cccccccCCCCc
Q 046017          348 RSLNLSVDSGNS  359 (443)
Q Consensus       348 ~~L~l~~N~l~~  359 (443)
                      ++|++++|.++.
T Consensus       105 ~~L~L~~N~~~c  116 (170)
T 3g39_A          105 THIWLLNNPWDC  116 (170)
T ss_dssp             CEEECCSSCBCT
T ss_pred             CEEEeCCCCCCC
Confidence            555555554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=8.7e-12  Score=106.29  Aligned_cols=107  Identities=23%  Similarity=0.272  Sum_probs=78.9

Q ss_pred             cceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccC
Q 046017          225 LCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSN  303 (443)
Q Consensus       225 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~  303 (443)
                      .+.+++++|.+. .+|..+  .++|++|++++|.+.+..|..+..+++|++|++++|+|+.+|.. +..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            356667765543 355444  36778888888877766677777888888888888888877654 47788888888888


Q ss_pred             CCCCCCCh-hhhCCCCCCeeeCCCCCCCccCc
Q 046017          304 NNLKRTPE-SLYQLSSLKYLKPFENNSDRIPE  334 (443)
Q Consensus       304 n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~  334 (443)
                      |+++.+|. .+..+++|++|++++|.+.-.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            88888775 47888888888888888765443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.27  E-value=1.6e-10  Score=112.34  Aligned_cols=255  Identities=11%  Similarity=0.074  Sum_probs=159.9

Q ss_pred             cCCCcceEEecCCCCCCcCC-ccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcE
Q 046017           17 ERPCSCGLRLKNCSSLESFP-SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSE   94 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~   94 (443)
                      .+..++.+.+.+.  .+.++ .+|.++ +|+.+.+..+ +...-..+|.+. +|+.+.+.. .++.++ ..|.++++|+.
T Consensus       111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            3467777777653  34444 456664 6888888764 333334456663 688888865 455554 45666655555


Q ss_pred             EecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-------CCCCcCEEEccCCCCCCCCCCCCCCcc
Q 046017           95 LELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-------KLKSLRRIKMSKCSNLKRFPKIASCNK  167 (443)
Q Consensus        95 L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~~~~~l~~~~~~~~l~~  167 (443)
                      +++++              |.++.++.......+|+.+.+..+-..       .+++|+.+++..+  ++.++.      
T Consensus       185 l~l~~--------------n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~------  242 (401)
T 4fdw_A          185 ADLSK--------------TKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQ------  242 (401)
T ss_dssp             EECTT--------------SCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECT------
T ss_pred             eecCC--------------CcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCccc------
Confidence            55543              456666555444566666666543100       3444444444431  222211      


Q ss_pred             ccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCC-----CCCCch
Q 046017          168 VGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSF-----ESLPSS  242 (443)
Q Consensus       168 L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~-----~~~p~~  242 (443)
                                               ..|.+ .+|+.+.+.. .....-..+|.++++|+.+++.++...     ..-+..
T Consensus       243 -------------------------~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          243 -------------------------EAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             -------------------------TTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             -------------------------ccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence                                     22334 5788888844 444444567888889999988876543     234567


Q ss_pred             hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCC-CC
Q 046017          243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLS-SL  319 (443)
Q Consensus       243 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~-~L  319 (443)
                      |..+++|+.+++.. .+...-...|.++++|+.+.+..+ ++.++ .+|..+ +|+.+++.+|.+..++ ..+.+++ .+
T Consensus       296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l  372 (401)
T 4fdw_A          296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI  372 (401)
T ss_dssp             TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred             hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence            88889999999984 354444557888899999999654 66664 457778 9999999999888765 4566664 67


Q ss_pred             CeeeCCCCCC
Q 046017          320 KYLKPFENNS  329 (443)
Q Consensus       320 ~~L~ls~n~l  329 (443)
                      +.|++..+.+
T Consensus       373 ~~l~vp~~~~  382 (401)
T 4fdw_A          373 TVIRVPAESV  382 (401)
T ss_dssp             CEEEECGGGH
T ss_pred             cEEEeCHHHH
Confidence            7887776554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=4.8e-13  Score=128.86  Aligned_cols=156  Identities=18%  Similarity=0.129  Sum_probs=100.0

Q ss_pred             cccceeeccccccccccccc----cc-CCCCcceeeccCccCCCCCCch-hhcCCCCCcEecccccccccCCCCC-----
Q 046017          199 KSLRFLETIACKKLERLPES----LG-QLALLCELKMIKCSSFESLPSS-LCMLKSLTPLAIIDCKIFKRLPNEL-----  267 (443)
Q Consensus       199 ~~L~~L~ls~n~~~~~~p~~----l~-~l~~L~~L~ls~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~l-----  267 (443)
                      +.|++|++++|.+.......    +. ..++|++|+|++|.+....... ...+++|++|++++|.+...-...+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56788888887765432222    22 2267888888887764432222 2235678888888887743322222     


Q ss_pred             CCCCCCceEEecCCCCcc-----cChhccCCCCCCEEEccCCCCCC-----CChhhhCCCCCCeeeCCCCCCCcc-----
Q 046017          268 GNLKCLAALIVKGTAIRE-----VPESLGYLSSLAKLELSNNNLKR-----TPESLYQLSSLKYLKPFENNSDRI-----  332 (443)
Q Consensus       268 ~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~n~l~~-----lp~~l~~l~~L~~L~ls~n~l~~l-----  332 (443)
                      ...++|++|++++|.|+.     ++..+...++|++|+|++|.++.     ++..+...++|++|++++|.|+..     
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            245678888888888763     45555677888888888888773     345567777888888888888643     


Q ss_pred             CcccccCCCCCcccccccccccCCCCc
Q 046017          333 PEYLRSSPTSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       333 p~~~~~~~~~lp~~L~~L~l~~N~l~~  359 (443)
                      +..+...     ++|++|++++|.++.
T Consensus       232 ~~~L~~~-----~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          232 ARAAREH-----PSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHC-----SSCCEEECTTSSCCH
T ss_pred             HHHHHhC-----CCCCEEeccCCCCCH
Confidence            2222222     568888888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.10  E-value=6.3e-09  Score=101.01  Aligned_cols=287  Identities=12%  Similarity=0.077  Sum_probs=151.5

Q ss_pred             ccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCC---------CCCCCc
Q 046017           37 SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNS---------SEFEYL  106 (443)
Q Consensus        37 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~---------~~l~~L  106 (443)
                      .+|.++.+|+.+.+.. .+...-..+|.++++|+.+++..+ ++.++ ..|.++.+|+.+.+...         .... +
T Consensus        65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~-~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCD-F  141 (394)
T ss_dssp             TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC-C
T ss_pred             HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccc-c
Confidence            3566677777777754 222222345666777777776543 44444 45556666666555431         1111 1


Q ss_pred             cEEEEeCCCCccc-CccccCCCCCCEEeccCCCCC-------CCCCcCEEEccCCCCCCCCCCC--C---CCccccccCc
Q 046017          107 RVLRVEGAAIREL-PESIGKSTLLSELELKNCSEL-------KLKSLRRIKMSKCSNLKRFPKI--A---SCNKVGITGI  173 (443)
Q Consensus       107 ~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~~~~~l~~~~~~--~---~l~~L~l~~l  173 (443)
                      ....+.. ....+ ...+.++++|+.+.+..+-..       .+.+|+.+++..+  ++.++..  .   .++.+.+.  
T Consensus       142 ~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~--  216 (394)
T 4fs7_A          142 KEITIPE-GVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP--  216 (394)
T ss_dssp             SEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC--
T ss_pred             cccccCc-cccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC--
Confidence            1111111 11222 233556667777776553211       3444555544331  2222221  1   11111110  


Q ss_pred             ccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEe
Q 046017          174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA  253 (443)
Q Consensus       174 ~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~  253 (443)
                                  .....+........+|+.+.+.. .....-...+..+..++.+.+..+ ........+..+..++.+.
T Consensus       217 ------------~~~~~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          217 ------------NSLYYLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             ------------TTCCEECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEE
T ss_pred             ------------CCceEeehhhcccCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceec
Confidence                        00111122223345666666654 222222345666777777777663 3333344566677777777


Q ss_pred             cccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCc
Q 046017          254 IIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDR  331 (443)
Q Consensus       254 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~  331 (443)
                      .....+   ....+..+.+|+.+.+.++ ++.++ .+|..+.+|+.+++.++ ++.+. ..|.+|++|+.+++..+ ++.
T Consensus       283 ~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~  356 (394)
T 4fs7_A          283 YGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK  356 (394)
T ss_dssp             ECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred             cCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence            665432   1234667788888888654 55554 45677888888888644 66664 56788888888888765 777


Q ss_pred             cCcccccCCCCCcccccccccccC
Q 046017          332 IPEYLRSSPTSIPSELRSLNLSVD  355 (443)
Q Consensus       332 lp~~~~~~~~~lp~~L~~L~l~~N  355 (443)
                      |+...+.-.    .+|+++++..+
T Consensus       357 I~~~aF~~C----~~L~~i~lp~~  376 (394)
T 4fs7_A          357 IGANAFQGC----INLKKVELPKR  376 (394)
T ss_dssp             ECTTTBTTC----TTCCEEEEEGG
T ss_pred             ehHHHhhCC----CCCCEEEECCC
Confidence            765444321    57777776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.09  E-value=6.8e-12  Score=120.76  Aligned_cols=136  Identities=15%  Similarity=0.072  Sum_probs=103.5

Q ss_pred             Ccccceeecccccccccccccc-cCCCCcceeeccCccCCCCCCchh-----hcCCCCCcEecccccccc----cCCCCC
Q 046017          198 LKSLRFLETIACKKLERLPESL-GQLALLCELKMIKCSSFESLPSSL-----CMLKSLTPLAIIDCKIFK----RLPNEL  267 (443)
Q Consensus       198 l~~L~~L~ls~n~~~~~~p~~l-~~l~~L~~L~ls~n~~~~~~p~~~-----~~l~~L~~L~l~~n~~~~----~~~~~l  267 (443)
                      .++|++|++++|.+.......+ ..+++|++|+|++|.+.......+     ...++|++|++++|.+..    .++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            3689999999998755322222 345789999999998765433333     235789999999998854    233445


Q ss_pred             CCCCCCceEEecCCCCcc-----cChhccCCCCCCEEEccCCCCCC-----CChhhhCCCCCCeeeCCCCCCCccC
Q 046017          268 GNLKCLAALIVKGTAIRE-----VPESLGYLSSLAKLELSNNNLKR-----TPESLYQLSSLKYLKPFENNSDRIP  333 (443)
Q Consensus       268 ~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~n~l~~-----lp~~l~~l~~L~~L~ls~n~l~~lp  333 (443)
                      ...++|++|++++|.|+.     ++..+...++|++|+|++|.++.     ++..+...++|++|+|++|.|+...
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            678899999999999883     45667788899999999999984     3456677899999999999997543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.08  E-value=2.6e-10  Score=108.75  Aligned_cols=102  Identities=22%  Similarity=0.087  Sum_probs=49.5

Q ss_pred             ecccccccccccccccCCCCcceeeccC-ccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCC
Q 046017          205 ETIACKKLERLPESLGQLALLCELKMIK-CSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAI  283 (443)
Q Consensus       205 ~ls~n~~~~~~p~~l~~l~~L~~L~ls~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l  283 (443)
                      +.++++.+..+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|++.+..|..|..+++|+.|+|++|+|
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            4444312333444 55555555555553 444443334455555555555555555444444455555555555555555


Q ss_pred             cccChhccCCCCCCEEEccCCCCC
Q 046017          284 REVPESLGYLSSLAKLELSNNNLK  307 (443)
Q Consensus       284 ~~lp~~~~~l~~L~~L~ls~n~l~  307 (443)
                      +.+|..+.....|+.|++.+|.+.
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeCHHHcccCCceEEEeeCCCcc
Confidence            555443322222555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=5e-10  Score=106.83  Aligned_cols=104  Identities=24%  Similarity=0.186  Sum_probs=78.0

Q ss_pred             eeeccCccCCCCCCchhhcCCCCCcEeccc-ccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCC
Q 046017          227 ELKMIKCSSFESLPSSLCMLKSLTPLAIID-CKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNN  304 (443)
Q Consensus       227 ~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n  304 (443)
                      .++.++++....+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|+|+.+++ .|..+++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            457777523455777 88888888888886 77766555678888888888888888886654 5688888888888888


Q ss_pred             CCCCCChhhhCCCCCCeeeCCCCCCCc
Q 046017          305 NLKRTPESLYQLSSLKYLKPFENNSDR  331 (443)
Q Consensus       305 ~l~~lp~~l~~l~~L~~L~ls~n~l~~  331 (443)
                      +|+.+|..+.....|+.|++.+|.+..
T Consensus        91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCCceEEEeeCCCccC
Confidence            888887544333348888888888754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.95  E-value=5e-08  Score=94.65  Aligned_cols=270  Identities=12%  Similarity=0.086  Sum_probs=150.2

Q ss_pred             ccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCC---------CCCCCccEEEEeCCCCcccC-ccccCCCC
Q 046017           60 LDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNS---------SEFEYLRVLRVEGAAIRELP-ESIGKSTL  128 (443)
Q Consensus        60 p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~---------~~l~~L~~L~l~~n~~~~lp-~~l~~l~~  128 (443)
                      ..+|.++.+|+.+.+.. .++.++ .+|.++++|+.+++..+         .++.+|+.+.+..+ +..+. ..+.++..
T Consensus        64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred             HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence            45788999999999974 477776 67889999999999653         23345555444332 22222 22333333


Q ss_pred             CCEEeccCCCC------CCCCCcCEEEccCCCCCCCCCCC-----CCCccccc-cCcccccccccccCCCCCcccCCccc
Q 046017          129 LSELELKNCSE------LKLKSLRRIKMSKCSNLKRFPKI-----ASCNKVGI-TGIKRLSSTLRLKNCSSLESLPSSLC  196 (443)
Q Consensus       129 L~~L~l~~n~~------~~l~~L~~L~l~~~~~l~~~~~~-----~~l~~L~l-~~l~~l~~~l~~~~~~~l~~lp~~~~  196 (443)
                      ++.........      ..+.+|+.+.+.+.  +..++..     .+++.+.+ .++..++              ...+.
T Consensus       142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~--------------~~~F~  205 (394)
T 4fs7_A          142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIR--------------DYCFA  205 (394)
T ss_dssp             SEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEEC--------------TTTTT
T ss_pred             cccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeC--------------chhhc
Confidence            22222222111      15677777777642  2333322     22333332 1111111              12244


Q ss_pred             CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017          197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL  276 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  276 (443)
                      ++..|+.+.+..+..  .+.........|+.+.+.. .....-...+..+..++.+.+..+.. ......+..+..++.+
T Consensus       206 ~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~  281 (394)
T 4fs7_A          206 ECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKV  281 (394)
T ss_dssp             TCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEE
T ss_pred             cccccceeecCCCce--EeehhhcccCCCceEEECC-CceecccccccccccceeEEcCCCcc-eeecccccccccccee
Confidence            555666665544221  1222233445666666654 22222234556677777777765532 3334456677777777


Q ss_pred             EecCCCCcccChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccC
Q 046017          277 IVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVD  355 (443)
Q Consensus       277 ~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N  355 (443)
                      ......+.  ...+..+.+|+.+.+.++ ++.++ ..+.++++|+.+++.. .++.|+...+.-.    .+|+.+++..|
T Consensus       282 ~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c----~~L~~i~lp~~  353 (394)
T 4fs7_A          282 IYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGC----TSLSNINFPLS  353 (394)
T ss_dssp             EECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC----TTCCEECCCTT
T ss_pred             ccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCC----CCCCEEEECcc
Confidence            76554322  234667788998888765 66665 4688889999998864 4777765443321    67888887655


Q ss_pred             CCCcc
Q 046017          356 SGNSL  360 (443)
Q Consensus       356 ~l~~l  360 (443)
                       ++.+
T Consensus       354 -l~~I  357 (394)
T 4fs7_A          354 -LRKI  357 (394)
T ss_dssp             -CCEE
T ss_pred             -ccEe
Confidence             4444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.90  E-value=1.5e-07  Score=91.23  Aligned_cols=108  Identities=10%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             ccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCC
Q 046017          217 ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSS  295 (443)
Q Consensus       217 ~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~  295 (443)
                      .+|.++..|+.+.+... ....-...|..+++|+.+.+.. .+...-...|.++.+|+.+++..+ ++.+. .+|..+.+
T Consensus       259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            35666677777776542 2222334566677777777753 232222345666777777777643 55553 35666777


Q ss_pred             CCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCC
Q 046017          296 LAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENN  328 (443)
Q Consensus       296 L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~  328 (443)
                      |+.+.+..+ ++.+. ..|.+|++|+.+++.++.
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            777777543 66664 467777777777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.82  E-value=3.1e-07  Score=88.97  Aligned_cols=290  Identities=11%  Similarity=0.127  Sum_probs=170.0

Q ss_pred             CcceEEecCCCCCCcC-CccccCCCCCcEEeccccc---cccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcE
Q 046017           20 CSCGLRLKNCSSLESF-PSSLCVLKSLRSLQIIDCK---KFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSE   94 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~-p~~~~~l~~L~~L~L~~n~---~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~   94 (443)
                      .|+.+.+...  .+.+ ..+|.++++|+.+.+..+.   +...-..+|..+.+|+.+.+..+ ++.++ ..|..+.+|+.
T Consensus        65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred             cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence            5888888754  4444 4578899999999987652   22222446777888887766543 44444 56777888888


Q ss_pred             EecCCC---------CCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-------CCCCcCEEEccCCCCCCC
Q 046017           95 LELKNS---------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-------KLKSLRRIKMSKCSNLKR  158 (443)
Q Consensus        95 L~ls~~---------~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~~~~~l~~  158 (443)
                      +.+...         .....|+.+.+..+ ++.+.........|+.+.+..+-..       .+.+++....... ....
T Consensus       142 i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~-~~~~  219 (394)
T 4gt6_A          142 VTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSE-SYPA  219 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCS-SSCB
T ss_pred             ccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccccc-cccc
Confidence            887542         24566777777544 4455443334456777776553211       3344444443321 1111


Q ss_pred             CCCC----CCCcc---ccc---cCcc--cccccccccCCCCCccc-CCcccCCcccceeecccccccccccccccCCCCc
Q 046017          159 FPKI----ASCNK---VGI---TGIK--RLSSTLRLKNCSSLESL-PSSLCMLKSLRFLETIACKKLERLPESLGQLALL  225 (443)
Q Consensus       159 ~~~~----~~l~~---L~l---~~l~--~l~~~l~~~~~~~l~~l-p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L  225 (443)
                      +...    .....   ...   ....  .+|.        .+..+ ...|..+++|+.+.+.. .....-...+.+++.|
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--------~v~~i~~~aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L  290 (394)
T 4gt6_A          220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPN--------GVARIETHAFDSCAYLASVKMPD-SVVSIGTGAFMNCPAL  290 (394)
T ss_dssp             SSSCEEEECTTSCEEEEECCTTCCCSEEECCT--------TEEEECTTTTTTCSSCCEEECCT-TCCEECTTTTTTCTTC
T ss_pred             ccceeecccccccccccccccccccceEEcCC--------cceEcccceeeecccccEEeccc-ccceecCccccccccc
Confidence            1110    00000   000   0000  1111        11122 13467788899998866 3333334578889999


Q ss_pred             ceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCC
Q 046017          226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNN  304 (443)
Q Consensus       226 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n  304 (443)
                      +.+.+.. .+...-...|..+.+|+.+++..+ +...-...|.++.+|+.+.+..+ ++.+. .+|.++++|+.+++.++
T Consensus       291 ~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          291 QDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             ccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            9999975 444444457888999999999764 43333457889999999999654 67664 56889999999999987


Q ss_pred             CCCCCChhhhCCCCCCeeeCCCCC
Q 046017          305 NLKRTPESLYQLSSLKYLKPFENN  328 (443)
Q Consensus       305 ~l~~lp~~l~~l~~L~~L~ls~n~  328 (443)
                      ....  ..+..+..|+.+.+..+.
T Consensus       368 ~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          368 RSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             HHHH--HTCBCCCCC---------
T ss_pred             eeeh--hhhhccCCCCEEEeCCCC
Confidence            4331  345667788887766543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=8.6e-10  Score=105.33  Aligned_cols=158  Identities=14%  Similarity=0.104  Sum_probs=91.3

Q ss_pred             CcccCCcccceeecccccc---------cccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccC
Q 046017          193 SSLCMLKSLRFLETIACKK---------LERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRL  263 (443)
Q Consensus       193 ~~~~~l~~L~~L~ls~n~~---------~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~  263 (443)
                      +++..+++|+.|.+.....         .+.+...+..+++|+.|.+++|... .++. + .+++|++|++..|.+....
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence            3345566777777654321         1123344556778888888776322 2333 3 3678888888777653322


Q ss_pred             CCCC--CCCCCCceEEecCC--C------CcccChhc--cCCCCCCEEEccCCCCCC-CChhh---hCCCCCCeeeCCCC
Q 046017          264 PNEL--GNLKCLAALIVKGT--A------IREVPESL--GYLSSLAKLELSNNNLKR-TPESL---YQLSSLKYLKPFEN  327 (443)
Q Consensus       264 ~~~l--~~l~~L~~L~l~~n--~------l~~lp~~~--~~l~~L~~L~ls~n~l~~-lp~~l---~~l~~L~~L~ls~n  327 (443)
                      ...+  ..+++|+.|+|+.+  .      +..+...+  ..+++|+.|++++|.+.. .+..+   ..+++|++|+|+.|
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            2222  25778888887531  1      22222222  246788888888887762 22222   24678888888888


Q ss_pred             CCCc-----cCcccccCCCCCcccccccccccCCCC
Q 046017          328 NSDR-----IPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       328 ~l~~-----lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      .++.     ++..+..+     ++|+.|++++|.++
T Consensus       290 ~L~d~G~~~L~~~L~~l-----~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          290 VLTDEGARLLLDHVDKI-----KHLKFINMKYNYLS  320 (362)
T ss_dssp             CCBHHHHHHHHTTHHHH-----TTCSEEECCSBBCC
T ss_pred             CCChHHHHHHHhhcccC-----CcceEEECCCCcCC
Confidence            8765     33322222     57888888887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=3.6e-09  Score=101.04  Aligned_cols=136  Identities=16%  Similarity=0.121  Sum_probs=89.8

Q ss_pred             CcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhh--cCCCCCcEecccc--cccc-----cC
Q 046017          193 SSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLC--MLKSLTPLAIIDC--KIFK-----RL  263 (443)
Q Consensus       193 ~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~--~l~~L~~L~l~~n--~~~~-----~~  263 (443)
                      ..+..+++|+.|++++|... .++. + .+++|++|++..|.+.......+.  .+++|+.|+|+.+  ...+     .+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            33556778888888876322 2333 3 378888888887765433223333  6788999888532  1111     11


Q ss_pred             CCCC--CCCCCCceEEecCCCCcc-cChhc---cCCCCCCEEEccCCCCCC-----CChhhhCCCCCCeeeCCCCCCCc
Q 046017          264 PNEL--GNLKCLAALIVKGTAIRE-VPESL---GYLSSLAKLELSNNNLKR-----TPESLYQLSSLKYLKPFENNSDR  331 (443)
Q Consensus       264 ~~~l--~~l~~L~~L~l~~n~l~~-lp~~~---~~l~~L~~L~ls~n~l~~-----lp~~l~~l~~L~~L~ls~n~l~~  331 (443)
                      ...+  ..+++|++|++.+|.+.. .+..+   ..+++|++|+|+.|.+..     ++..+..+++|+.|++++|.++.
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            1122  357899999999998872 22222   357899999999999884     34455678999999999998764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.70  E-value=5e-06  Score=79.90  Aligned_cols=134  Identities=13%  Similarity=0.017  Sum_probs=68.4

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +....+|+.+.+.. .....-...+..+..|+.+.+..+ +...-...+..+.+|+.+.+..+ +...-...+.++++|+
T Consensus       213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            33445555555543 222222234555666666666542 22222334555666666666432 2222223455666666


Q ss_pred             eEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccC
Q 046017          275 ALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIP  333 (443)
Q Consensus       275 ~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp  333 (443)
                      .+.+.++.++.++ ..|.++.+|+.+.+..+ ++.+. ..|.+|++|+.+.+..+ ++.|.
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~  348 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE  348 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence            6666666666553 34556666666666543 55554 35666666666655432 44443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.66  E-value=2.3e-06  Score=82.29  Aligned_cols=149  Identities=13%  Similarity=0.050  Sum_probs=97.2

Q ss_pred             CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017          197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL  276 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  276 (443)
                      ....+..+.+.. .........+.....|+.+.+.. .........+..+..|+.+.+..+ +...-...+.++.+|+.+
T Consensus       192 ~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i  268 (379)
T 4h09_A          192 AAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL  268 (379)
T ss_dssp             TTCCCSEEECCT-TCCEECTTTTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccccccccccc-ceeEEeecccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence            334444444433 12222234556677788887765 333333456677888988888765 333334567788889999


Q ss_pred             EecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017          277 IVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV  354 (443)
Q Consensus       277 ~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~  354 (443)
                      .+..+ ++.++ ..+..+++|+.+.+.++.++.++ ..|.++++|+.+++..+ ++.|....+.-.    .+|+++.+..
T Consensus       269 ~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C----~~L~~i~ip~  342 (379)
T 4h09_A          269 NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC----KALSTISYPK  342 (379)
T ss_dssp             EECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC----TTCCCCCCCT
T ss_pred             ccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC----CCCCEEEECC
Confidence            88654 55554 45778899999999988888876 57888999999998653 777766443321    5677776643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=2.2e-08  Score=86.32  Aligned_cols=114  Identities=16%  Similarity=0.082  Sum_probs=57.5

Q ss_pred             cccccCCCCcceeeccCc-cCCCC----CCchhhcCCCCCcEeccccccccc----CCCCCCCCCCCceEEecCCCCcc-
Q 046017          216 PESLGQLALLCELKMIKC-SSFES----LPSSLCMLKSLTPLAIIDCKIFKR----LPNELGNLKCLAALIVKGTAIRE-  285 (443)
Q Consensus       216 p~~l~~l~~L~~L~ls~n-~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~-  285 (443)
                      ...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|++++|.|+. 
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344556677777777776 54321    223344455666666666655321    11222333455555555555552 


Q ss_pred             ----cChhccCCCCCCEEEc--cCCCCCC-----CChhhhCCCCCCeeeCCCCCC
Q 046017          286 ----VPESLGYLSSLAKLEL--SNNNLKR-----TPESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       286 ----lp~~~~~l~~L~~L~l--s~n~l~~-----lp~~l~~l~~L~~L~ls~n~l  329 (443)
                          +...+...++|++|++  ++|.+..     +...+...++|++|++++|.+
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                3344444455555555  4555551     223344445555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=2.7e-08  Score=85.73  Aligned_cols=112  Identities=16%  Similarity=0.125  Sum_probs=65.1

Q ss_pred             hhhcCCCCCcEecccc-ccccc----CCCCCCCCCCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCCC---
Q 046017          242 SLCMLKSLTPLAIIDC-KIFKR----LPNELGNLKCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLKR---  308 (443)
Q Consensus       242 ~~~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~~---  308 (443)
                      .+...++|++|++++| .+...    +...+...++|++|++++|.|.     .+...+...++|++|+|++|.|..   
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3445566777777776 55321    2233445566777777777665     234445555667777777777762   


Q ss_pred             --CChhhhCCCCCCeeeC--CCCCCCc-----cCcccccCCCCCcccccccccccCCCC
Q 046017          309 --TPESLYQLSSLKYLKP--FENNSDR-----IPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       309 --lp~~l~~l~~L~~L~l--s~n~l~~-----lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                        +...+...++|++|++  ++|.++.     +...+...     ++|++|++++|.++
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n-----~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN-----TTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-----SSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-----CCcCEEeccCCCCC
Confidence              3445666667777777  5576653     22322222     46777777766543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=1.8e-07  Score=84.83  Aligned_cols=62  Identities=18%  Similarity=0.311  Sum_probs=28.0

Q ss_pred             cCCCCCcEecccccccc--cCCCCCCCCCCCceEEecCCCCcccChhccCCC--CCCEEEccCCCCC
Q 046017          245 MLKSLTPLAIIDCKIFK--RLPNELGNLKCLAALIVKGTAIREVPESLGYLS--SLAKLELSNNNLK  307 (443)
Q Consensus       245 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~--~L~~L~ls~n~l~  307 (443)
                      ++++|+.|+|++|++.+  .++..+..+++|+.|+|++|+|+.+. .+..+.  +|++|++++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence            34555555555555543  22333334445555555555444331 122222  4555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=7.5e-07  Score=80.73  Aligned_cols=79  Identities=16%  Similarity=0.231  Sum_probs=57.1

Q ss_pred             cCCCCcceeeccCccCCC--CCCchhhcCCCCCcEecccccccccCCCCCCCCC--CCceEEecCCCCc-ccC-------
Q 046017          220 GQLALLCELKMIKCSSFE--SLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLK--CLAALIVKGTAIR-EVP-------  287 (443)
Q Consensus       220 ~~l~~L~~L~ls~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~-~lp-------  287 (443)
                      .++++|+.|+|++|.+.+  .+|..+..+++|+.|+|++|++.+.  ..+..+.  +|++|++++|.+. .+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457889999999988876  5567777889999999999988653  2233333  8999999999887 344       


Q ss_pred             hhccCCCCCCEEE
Q 046017          288 ESLGYLSSLAKLE  300 (443)
Q Consensus       288 ~~~~~l~~L~~L~  300 (443)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2245566666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=4.2e-06  Score=70.48  Aligned_cols=35  Identities=6%  Similarity=0.088  Sum_probs=15.6

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccc
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCK   54 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~   54 (443)
                      +|+.||+++|.+...--..+..+++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            35555555554222211224445555555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=2.6e-06  Score=71.73  Aligned_cols=82  Identities=12%  Similarity=0.126  Sum_probs=36.9

Q ss_pred             CcceeeccCccCCCCCCchhhcCCCCCcEecccccccc-cCCCCCCCC----CCCceEEecCC-CCccc-ChhccCCCCC
Q 046017          224 LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK-RLPNELGNL----KCLAALIVKGT-AIREV-PESLGYLSSL  296 (443)
Q Consensus       224 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l----~~L~~L~l~~n-~l~~l-p~~~~~l~~L  296 (443)
                      .|+.||+++|.++..--..+..+++|++|+|++|...+ .--..+..+    ++|++|++++| +++.- -..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34455555444333222333445555555555553211 111112221    34666666666 45511 1224456666


Q ss_pred             CEEEccCCC
Q 046017          297 AKLELSNNN  305 (443)
Q Consensus       297 ~~L~ls~n~  305 (443)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.03  E-value=0.00019  Score=61.54  Aligned_cols=56  Identities=25%  Similarity=0.193  Sum_probs=25.2

Q ss_pred             CCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCC-----CCChhhhCCCCCCeeeCCC
Q 046017          271 KCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLK-----RTPESLYQLSSLKYLKPFE  326 (443)
Q Consensus       271 ~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~-----~lp~~l~~l~~L~~L~ls~  326 (443)
                      +.|+.|+|++|.|.     .+...+..-+.|+.|+|++|.|.     .+-+.+..-+.|++|+|++
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            34444444444443     22333333445555555555554     1223344444555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.92  E-value=0.001  Score=56.99  Aligned_cols=17  Identities=12%  Similarity=0.116  Sum_probs=9.4

Q ss_pred             ccccCCCCCCEEeccCC
Q 046017          121 ESIGKSTLLSELELKNC  137 (443)
Q Consensus       121 ~~l~~l~~L~~L~l~~n  137 (443)
                      ..+..-+.|++|+++.+
T Consensus       151 ~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          151 MAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCCcCeEeccCC
Confidence            33444556666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.91  E-value=0.0016  Score=51.87  Aligned_cols=52  Identities=21%  Similarity=0.238  Sum_probs=23.8

Q ss_pred             eEEecCCCCc--ccChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCC
Q 046017          275 ALIVKGTAIR--EVPESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENN  328 (443)
Q Consensus       275 ~L~l~~n~l~--~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~  328 (443)
                      +++.++++++  .+|..+  .++|+.|+|++|+|+.+|. .+..+++|++|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4444444444  444321  1245555555555555442 33444445555444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.16  E-value=0.0065  Score=48.34  Aligned_cols=56  Identities=18%  Similarity=0.224  Sum_probs=45.5

Q ss_pred             CEEEccCCCCC--CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017          297 AKLELSNNNLK--RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       297 ~~L~ls~n~l~--~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      ..++.++++++  .+|..+  -++|++|+|++|+|+.+|...+..   + ++|++|+|++|...
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~---l-~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDA---L-PALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGG---C-TTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhh---c-cccCEEEecCCCee
Confidence            48899999998  898643  247999999999999999876542   2 58999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	443
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 44/259 (16%), Positives = 81/259 (31%), Gaps = 17/259 (6%)

Query: 79  IRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCS 138
              L     ++  + + + KN      L ++  + + I   P +      L  L L    
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKN- 89

Query: 139 ELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKN--CSSLESLPSSLC 196
             +LK L          L+      +  +  +         + L      S      +  
Sbjct: 90  --QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID 256
            +K L +   IA   +  +P+ L     L EL +      +   +SL  L +L  L +  
Sbjct: 148 GMKKLSY-IRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 257 CKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPES---- 312
             I       L N   L  L +    + +VP  L     +  + L NNN+     +    
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 313 ---LYQLSSLKYLKPFENN 328
                + +S   +  F N 
Sbjct: 265 PGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 60/318 (18%), Positives = 112/318 (35%), Gaps = 36/318 (11%)

Query: 18  RPCSCGLRLKNCSS--LESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVE 75
             C C LR+  CS   LE  P  L        L + + K  E    +  NL+ L  L + 
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILI 63

Query: 76  GAAIRELS-QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELEL 134
              I ++S  +   L  L  L L  +               ++ELPE + K+     +  
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQ--------------LKELPEKMPKTLQELRVHE 109

Query: 135 KNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSS 194
              ++++      +       L   P  +S  + G     +  S +R+ + + + ++P  
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG 168

Query: 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAI 254
           L    SL  L     K  +    SL  L  L +L +   S       SL     L  L +
Sbjct: 169 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 255 IDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-------LGYLSSLAKLELSNNNLK 307
            + K+ K  P  L + K +  + +    I  +  +           +S + + L +N ++
Sbjct: 227 NNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

Query: 308 RTP------ESLYQLSSL 319
                      +Y  +++
Sbjct: 286 YWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 47/260 (18%), Positives = 85/260 (32%), Gaps = 9/260 (3%)

Query: 106 LRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASC 165
             +L ++   I E+ +   K+  L  L        K+  +     +    L+R     + 
Sbjct: 33  TALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 166 NKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALL 225
            K     + +    LR+      +   S    L  +  +E +    L+      G    +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGM 149

Query: 226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE 285
            +L  I+ +          +  SLT L +   KI K     L  L  LA L +   +I  
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 286 VPESLGYLSS-LAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIP 344
           V       +  L +L L+NN L + P  L     ++ +    NN   I       P    
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 345 --SELRSLNLSVDSGNSLNL 362
             +    ++L     N +  
Sbjct: 270 KKASYSGVSL---FSNPVQY 286

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 9/175 (5%)

Query: 148 IKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETI 207
             +   +NL     +       I  +  L++   L   ++  S  + L  L  L  L+ +
Sbjct: 213 TPLGILTNLDEL-SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK-L 270

Query: 208 ACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL 267
              ++  +    G   L     +    +     S +  LK+LT L +    I    P  +
Sbjct: 271 GANQISNISPLAG---LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--V 325

Query: 268 GNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYL 322
            +L  L  L      + +V  SL  L+++  L   +N +      L  L+ +  L
Sbjct: 326 SSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 14/190 (7%)

Query: 164 SCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLA 223
           +     IT +  L++   L    +      +L  L +L  L+    +     P  L  L 
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLT 263

Query: 224 LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAI 283
            L ELK+         P +     +     +   +      + + NLK L  L +    I
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTN----LELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 284 REVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSI 343
            ++   +  L+ L +L  +NN +     SL  L+++ +L    N    +       P + 
Sbjct: 320 SDISP-VSSLTKLQRLFFANNKVS-DVSSLANLTNINWLSAGHNQISDLT------PLAN 371

Query: 344 PSELRSLNLS 353
            + +  L L+
Sbjct: 372 LTRITQLGLN 381

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 244 CMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSN 303
            +  SL  L + + K+   LP     L+ L   I     + EVPE      +L +L +  
Sbjct: 281 DLPPSLEELNVSNNKL-IELPALPPRLERL---IASFNHLAEVPELPQ---NLKQLHVEY 333

Query: 304 NNLKRTPESLYQLSSLK 320
           N L+  P+    +  L+
Sbjct: 334 NPLREFPDIPESVEDLR 350

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 285 EVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENN 328
            +P+ L  L  L  L +S NNL         L        + NN
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANN 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	443
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.16

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=8.8e-31  Score=245.93  Aligned_cols=261  Identities=20%  Similarity=0.187  Sum_probs=167.3

Q ss_pred             CCCCCCc--cCCCCCccC---CCcceEEecCCCCCC--cCCccccCCCCCcEEeccc-cccccccccccCCCCcccEEEe
Q 046017            3 PKIPSCN--IDGSTGIER---PCSCGLRLKNCSSLE--SFPSSLCVLKSLRSLQIID-CKKFERLLDELGNLETLLVLRV   74 (443)
Q Consensus         3 ~~~~~c~--~~g~~~~~~---~~L~~L~ls~~~~~~--~~p~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~l   74 (443)
                      ++.|||.  |.||+|..-   .+++.|+|+++.+.+  .+|+.++++++|++|+|++ |.+.|.+|..|+++++|++|++
T Consensus        29 ~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~L  108 (313)
T d1ogqa_          29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI  108 (313)
T ss_dssp             TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEE
T ss_pred             CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhh
Confidence            5679995  999999743   379999999998766  5788999999999999987 6777889999999999999999


Q ss_pred             ecCchhhhh-hhhccCCCCcEEecCCCCCCCCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccC
Q 046017           75 EGAAIRELS-QSLGQLALLSELELKNSSEFEYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSK  152 (443)
Q Consensus        75 ~~n~l~~lp-~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~  152 (443)
                      ++|.+..++ ..+..+.+|+++++++              |. ...+|..+.++++|+++++                  
T Consensus       109 s~N~l~~~~~~~~~~~~~L~~l~l~~--------------N~~~~~~p~~l~~l~~L~~l~l------------------  156 (313)
T d1ogqa_         109 THTNVSGAIPDFLSQIKTLVTLDFSY--------------NALSGTLPPSISSLPNLVGITF------------------  156 (313)
T ss_dssp             EEECCEEECCGGGGGCTTCCEEECCS--------------SEEESCCCGGGGGCTTCCEEEC------------------
T ss_pred             ccccccccccccccchhhhccccccc--------------ccccccCchhhccCcccceeec------------------
Confidence            998887443 4455555454444443              33 2334554554554444444                  


Q ss_pred             CCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCc-ceeecc
Q 046017          153 CSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALL-CELKMI  231 (443)
Q Consensus       153 ~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L-~~L~ls  231 (443)
                                                                            ++|.+.+.+|..+..+..+ +.++++
T Consensus       157 ------------------------------------------------------~~n~l~~~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         157 ------------------------------------------------------DGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             ------------------------------------------------------CSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             ------------------------------------------------------cccccccccccccccccccccccccc
Confidence                                                                  4444444444444444443 445555


Q ss_pred             CccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCC-CCC
Q 046017          232 KCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLK-RTP  310 (443)
Q Consensus       232 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~-~lp  310 (443)
                      +|.+.+..|..+..+..+ .++++.+...+.+|..+..+++++.+++++|.++..++.++.+++|+.|++++|+++ .+|
T Consensus       183 ~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP  261 (313)
T d1ogqa_         183 RNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             SSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCC
Confidence            555555555554444332 455555555555555555666666666666665544445566666666666666666 566


Q ss_pred             hhhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCcccccccccccCC
Q 046017          311 ESLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSELRSLNLSVDS  356 (443)
Q Consensus       311 ~~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~L~~L~l~~N~  356 (443)
                      +.+.++++|++|+|++|+|+ .+|+ +..+     ++|+.+++++|.
T Consensus       262 ~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L-----~~L~~l~l~~N~  302 (313)
T d1ogqa_         262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL-----QRFDVSAYANNK  302 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCC-STTG-----GGSCGGGTCSSS
T ss_pred             hHHhCCCCCCEEECcCCcccccCCC-cccC-----CCCCHHHhCCCc
Confidence            66666667777777776663 5654 2222     566666666663

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.7e-26  Score=219.92  Aligned_cols=305  Identities=19%  Similarity=0.273  Sum_probs=193.6

Q ss_pred             cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017           17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE   96 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~   96 (443)
                      .+.+|++|+++++++ +.+. .+..+++|++|++++|++.+ +| .++++++|++|++++|.+..+++ ++.+++|+.|+
T Consensus        42 ~l~~l~~L~l~~~~I-~~l~-gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~  116 (384)
T d2omza2          42 DLDQVTTLQADRLGI-KSID-GVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  116 (384)
T ss_dssp             HHTTCCEEECCSSCC-CCCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             HhCCCCEEECCCCCC-CCcc-ccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccccc-ccccccccccc
Confidence            567899999999984 4554 48889999999999998654 55 38999999999999999988764 78999999999


Q ss_pred             cCCCC--------CCCCccEEEEeCCCCcccCc--------------------cccCCCCCCEEeccCCCCC------CC
Q 046017           97 LKNSS--------EFEYLRVLRVEGAAIRELPE--------------------SIGKSTLLSELELKNCSEL------KL  142 (443)
Q Consensus        97 ls~~~--------~l~~L~~L~l~~n~~~~lp~--------------------~l~~l~~L~~L~l~~n~~~------~l  142 (443)
                      ++++.        ....+.......+.+..+..                    .+...+.........+...      .+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            98763        22344444444433222111                    1112222222333322221      55


Q ss_pred             CCcCEEEccCCCCCCCCCCC---CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccc
Q 046017          143 KSLRRIKMSKCSNLKRFPKI---ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESL  219 (443)
Q Consensus       143 ~~L~~L~l~~~~~l~~~~~~---~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l  219 (443)
                      ++++.+++++| .++.++..   .+++.|++.             .+.+..++ .+..+++|+.|++++|.+.+..  .+
T Consensus       197 ~~~~~l~l~~n-~i~~~~~~~~~~~L~~L~l~-------------~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~  259 (384)
T d2omza2         197 TNLESLIATNN-QISDITPLGILTNLDELSLN-------------GNQLKDIG-TLASLTNLTDLDLANNQISNLA--PL  259 (384)
T ss_dssp             TTCSEEECCSS-CCCCCGGGGGCTTCCEEECC-------------SSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GG
T ss_pred             cccceeeccCC-ccCCCCcccccCCCCEEECC-------------CCCCCCcc-hhhcccccchhccccCccCCCC--cc
Confidence            66666666664 33333221   334444331             01122222 3556677777777776655432  35


Q ss_pred             cCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEE
Q 046017          220 GQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKL  299 (443)
Q Consensus       220 ~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L  299 (443)
                      +.+++|++|+++++.+.+. + .+..++.++.+++..|.+.+  ...+..+++++.|++++|+++.+++ +..+++|++|
T Consensus       260 ~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L  334 (384)
T d2omza2         260 SGLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL  334 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEE
T ss_pred             cccccCCEeeccCcccCCC-C-cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc-cccCCCCCEE
Confidence            6677777777777665432 2 35566777777777776643  2335666777777777777776653 6667777777


Q ss_pred             EccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccC
Q 046017          300 ELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVD  355 (443)
Q Consensus       300 ~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N  355 (443)
                      ++++|+++.++ .+..+++|++|++++|+++.+++ +..+     ++|++|++++|
T Consensus       335 ~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l-----~~L~~L~L~~N  383 (384)
T d2omza2         335 FFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANL-----TRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTC-----TTCSEEECCCE
T ss_pred             ECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccC-----CCCCEeeCCCC
Confidence            77777777766 46777777777777777777665 4443     57777777766

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.3e-25  Score=205.36  Aligned_cols=269  Identities=22%  Similarity=0.215  Sum_probs=139.0

Q ss_pred             cceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecCC
Q 046017           21 SCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELKN   99 (443)
Q Consensus        21 L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~   99 (443)
                      .+.+|-++.+ ++.+|..+.  +++++|++++|++....+.+|.++++|++|++++|.+..+ |..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~-L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSC-CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCC-CCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            3444545544 556666553  5788888888765443334677888888888888877766 35566665555555544


Q ss_pred             CCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccccc
Q 046017          100 SSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSST  179 (443)
Q Consensus       100 ~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~  179 (443)
                                    |+++.+|..+  .+.++.|++..|...                 .++.                  
T Consensus        89 --------------n~l~~l~~~~--~~~l~~L~~~~n~l~-----------------~l~~------------------  117 (305)
T d1xkua_          89 --------------NQLKELPEKM--PKTLQELRVHENEIT-----------------KVRK------------------  117 (305)
T ss_dssp             --------------SCCSBCCSSC--CTTCCEEECCSSCCC-----------------BBCH------------------
T ss_pred             --------------CccCcCccch--hhhhhhhhccccchh-----------------hhhh------------------
Confidence                          5566666532  345666666554211                 1100                  


Q ss_pred             ccccCCCCCcccCCcccCCcccceeecccccc--cccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccc
Q 046017          180 LRLKNCSSLESLPSSLCMLKSLRFLETIACKK--LERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDC  257 (443)
Q Consensus       180 l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~--~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n  257 (443)
                                   ..+.....+..++...+..  ....+..+..+++|+.+++++|.+. .+|..  .+++|++|++++|
T Consensus       118 -------------~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n  181 (305)
T d1xkua_         118 -------------SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGN  181 (305)
T ss_dssp             -------------HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTS
T ss_pred             -------------hhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCC
Confidence                         0011222233333333211  1112233444445555555554432 22322  1345555555555


Q ss_pred             cccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCccc
Q 046017          258 KIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYL  336 (443)
Q Consensus       258 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~  336 (443)
                      ......+..+..++.+++|++++|.++.+ +..+..+++|++|++++|+++++|..+..+++|++|++++|+|+.|+...
T Consensus       182 ~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             cCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhh
Confidence            55555555555555555566655555544 33445556666666666666666655666666666666666666555432


Q ss_pred             ccCC--CCCcccccccccccCCCCc
Q 046017          337 RSSP--TSIPSELRSLNLSVDSGNS  359 (443)
Q Consensus       337 ~~~~--~~lp~~L~~L~l~~N~l~~  359 (443)
                      +...  ...+.+|+.|++++|.++.
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ccCcchhcccCCCCEEECCCCcCcc
Confidence            2110  0123456666666665543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=2e-24  Score=207.60  Aligned_cols=314  Identities=18%  Similarity=0.251  Sum_probs=178.2

Q ss_pred             EecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCC---
Q 046017           25 RLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSS---  101 (443)
Q Consensus        25 ~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~---  101 (443)
                      .+....+.+.++  ...+.+|++|+++++.+.. + +.+..+++|++|++++|+++.+|. ++++++|++|++++|.   
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccc
Confidence            444444333333  3467889999999988653 4 468899999999999999998874 7788777777777652   


Q ss_pred             -----CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcC--EEEccCCCCCCCCCCCCCCccc
Q 046017          102 -----EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLR--RIKMSKCSNLKRFPKIASCNKV  168 (443)
Q Consensus       102 -----~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~--~L~l~~~~~l~~~~~~~~l~~L  168 (443)
                           .+++|+.|+++++.++.++. ......+..+....+...      ......  ...... .....+.........
T Consensus       103 i~~l~~l~~L~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  180 (384)
T d2omza2         103 ITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-TDLKPLANLTTLERL  180 (384)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-CCCGGGTTCTTCCEE
T ss_pred             ccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-chhhhhccccccccc
Confidence                 33444444444444433332 122223333332222111      000000  000000 000000000000000


Q ss_pred             cc--cCcc------cccc--cccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017          169 GI--TGIK------RLSS--TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES  238 (443)
Q Consensus       169 ~l--~~l~------~l~~--~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~  238 (443)
                      ..  +...      .++.  .+.. ....+..++. ...+++|++|++++|.+.. + ..+..+++|+.|++++|.+.+.
T Consensus       181 ~~~~~~~~~~~~~~~l~~~~~l~l-~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~  256 (384)
T d2omza2         181 DISSNKVSDISVLAKLTNLESLIA-TNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL  256 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEEC-CSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccccccccceeec-cCCccCCCCc-ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCC
Confidence            00  0000      0000  0000 1122223322 3455677777777765443 2 3456677777777777765543


Q ss_pred             CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017          239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS  318 (443)
Q Consensus       239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~  318 (443)
                      .  .+..+++|++|+++++.+.+ ++ .+..++.++.+++.+|.++.++. +..+++++.|++++|+++.++. +..+++
T Consensus       257 ~--~~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~~-l~~l~~  330 (384)
T d2omza2         257 A--PLSGLTKLTELKLGANQISN-IS-PLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTK  330 (384)
T ss_dssp             G--GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTT
T ss_pred             C--cccccccCCEeeccCcccCC-CC-ccccccccccccccccccccccc-cchhcccCeEECCCCCCCCCcc-cccCCC
Confidence            2  35667777777777776643 22 25566777777777777776543 6677888888888888888764 778888


Q ss_pred             CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCccc
Q 046017          319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLN  361 (443)
Q Consensus       319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~  361 (443)
                      |++|++++|+++.++. +..+     ++|++|++++|.++.++
T Consensus       331 L~~L~L~~n~l~~l~~-l~~l-----~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         331 LQRLFFANNKVSDVSS-LANL-----TNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CCEEECCSSCCCCCGG-GGGC-----TTCCEEECCSSCCCBCG
T ss_pred             CCEEECCCCCCCCChh-HcCC-----CCCCEEECCCCcCCCCh
Confidence            8888888888887763 5554     68888888888877764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.3e-23  Score=195.82  Aligned_cols=267  Identities=20%  Similarity=0.192  Sum_probs=211.4

Q ss_pred             CCCCCCCccCCCCCcc----------CCCcceEEecCCCCCCcCC-ccccCCCCCcEEeccccccccccccccCCCCccc
Q 046017            2 FPKIPSCNIDGSTGIE----------RPCSCGLRLKNCSSLESFP-SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLL   70 (443)
Q Consensus         2 ~~~~~~c~~~g~~~~~----------~~~L~~L~ls~~~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~   70 (443)
                      .|..-.|.|.++.|..          .+++++|++++|+ ++.+| .+|.++++|++|++++|.+....|..|.++++|+
T Consensus         4 ~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~   82 (305)
T d1xkua_           4 CPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE   82 (305)
T ss_dssp             CCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCc-CCCcChhHhhccccccccccccccccccchhhhhCCCccC
Confidence            3566667777766631          3689999999998 45555 5799999999999999998877788899999999


Q ss_pred             EEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEE
Q 046017           71 VLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIK  149 (443)
Q Consensus        71 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~  149 (443)
                      +|++++|+++.+|..+.                ..++.|++.+|.+..++.. +.....+..++...+.           
T Consensus        83 ~L~l~~n~l~~l~~~~~----------------~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~-----------  135 (305)
T d1xkua_          83 RLYLSKNQLKELPEKMP----------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-----------  135 (305)
T ss_dssp             EEECCSSCCSBCCSSCC----------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-----------
T ss_pred             EecccCCccCcCccchh----------------hhhhhhhccccchhhhhhhhhhcccccccccccccc-----------
Confidence            99999999998885432                3445555556777777654 3445566666665541           


Q ss_pred             ccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceee
Q 046017          150 MSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELK  229 (443)
Q Consensus       150 l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~  229 (443)
                                                         .......+..+..+++|+.+++++|.+.. +|..+  +++|++|+
T Consensus       136 -----------------------------------~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~  177 (305)
T d1xkua_         136 -----------------------------------LKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELH  177 (305)
T ss_dssp             -----------------------------------CCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEE
T ss_pred             -----------------------------------ccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEE
Confidence                                               01112233457788899999999977654 55443  68999999


Q ss_pred             ccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCC
Q 046017          230 MIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRT  309 (443)
Q Consensus       230 ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~l  309 (443)
                      +++|......+..+..++.+++|++++|.+.+..+..+.++++|++|++++|+|+.+|.++..+++|++|++++|+|+.+
T Consensus       178 l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCcc
Confidence            99999988888999999999999999999988778889999999999999999999999999999999999999999988


Q ss_pred             Ch-------hhhCCCCCCeeeCCCCCCC--ccCc
Q 046017          310 PE-------SLYQLSSLKYLKPFENNSD--RIPE  334 (443)
Q Consensus       310 p~-------~l~~l~~L~~L~ls~n~l~--~lp~  334 (443)
                      +.       ....+++|+.|++++|.++  .+++
T Consensus       258 ~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             ChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            63       2346789999999999986  4544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=4.4e-25  Score=206.67  Aligned_cols=171  Identities=19%  Similarity=0.182  Sum_probs=147.9

Q ss_pred             cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCC-CcEecccccccccCCCCCCCCCC
Q 046017          194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSL-TPLAIIDCKIFKRLPNELGNLKC  272 (443)
Q Consensus       194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L-~~L~l~~n~~~~~~~~~l~~l~~  272 (443)
                      .+..+.+|+++++++|...+.+|..++.++.++.+++++|.+.+.+|..+..+..+ +.+++++|++.+..|..+..+..
T Consensus       120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~  199 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL  199 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred             cccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc
Confidence            35677789999999988899999999999999999999999999999999888876 88999999999888888777654


Q ss_pred             CceEEecCCCCc-ccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCccccccc
Q 046017          273 LAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSELRSL  350 (443)
Q Consensus       273 L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~L~~L  350 (443)
                      + .++++++.+. .+|..+..+++++.+++++|.+...+..+..+++|++|++++|+++ .+|+.+..+     ++|++|
T Consensus       200 ~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L-----~~L~~L  273 (313)
T d1ogqa_         200 A-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-----KFLHSL  273 (313)
T ss_dssp             S-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC-----TTCCEE
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCC-----CCCCEE
Confidence            4 7899888766 7788888999999999999999977778999999999999999995 899999886     799999


Q ss_pred             ccccCCCC-cccCChhhhhhHH
Q 046017          351 NLSVDSGN-SLNLDLNKLSEIV  371 (443)
Q Consensus       351 ~l~~N~l~-~l~~~~~~l~~l~  371 (443)
                      ++++|.++ .+|. +.+++.+.
T Consensus       274 ~Ls~N~l~g~iP~-~~~L~~L~  294 (313)
T d1ogqa_         274 NVSFNNLCGEIPQ-GGNLQRFD  294 (313)
T ss_dssp             ECCSSEEEEECCC-STTGGGSC
T ss_pred             ECcCCcccccCCC-cccCCCCC
Confidence            99999887 6774 44555553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=2.8e-20  Score=175.96  Aligned_cols=292  Identities=24%  Similarity=0.236  Sum_probs=158.8

Q ss_pred             CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecC
Q 046017           19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELK   98 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls   98 (443)
                      .++++||+++++ ++.+|+.   .++|++|++++|++. .+|..   +.+|+.|++++|.++.++.    ++        
T Consensus        38 ~~l~~LdLs~~~-L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~~----lp--------   97 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD----LP--------   97 (353)
T ss_dssp             HTCSEEECTTSC-CSCCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS----CC--------
T ss_pred             cCCCEEEeCCCC-CCCCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhhh----hc--------
Confidence            468899999987 5678863   568899999988754 67764   4578888999988876653    11        


Q ss_pred             CCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----CCCCcCEEEccCCCCCCCCCCC---CCCccccc-
Q 046017           99 NSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL----KLKSLRRIKMSKCSNLKRFPKI---ASCNKVGI-  170 (443)
Q Consensus        99 ~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~~~~l~~~~~~---~~l~~L~l-  170 (443)
                           +.|++|++++|.+..+|. ++.+++|++|+++++...    ....+..+.+..+.... ....   ..++.+.+ 
T Consensus        98 -----~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_          98 -----PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD  170 (353)
T ss_dssp             -----TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             -----cccccccccccccccccc-hhhhccceeeccccccccccccccccccchhhccccccc-cccccccccceecccc
Confidence                 234444555555666664 455666666666665443    33344444444422211 1111   22222222 


Q ss_pred             -cCccccccccc-----ccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhh
Q 046017          171 -TGIKRLSSTLR-----LKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLC  244 (443)
Q Consensus       171 -~~l~~l~~~l~-----~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~  244 (443)
                       +.....+....     ...+..+..+|. +..++.|+.+++++|... .++.   ...++..+.+.++.... .+.   
T Consensus       171 ~n~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~-~~~---  241 (353)
T d1jl5a_         171 NNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTD-LPE---  241 (353)
T ss_dssp             SSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSC-CCC---
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccccc-cccc---ccccccccccccccccc-ccc---
Confidence             11111111000     001222233332 445666777777665432 2332   23445556665544332 111   


Q ss_pred             cCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeC
Q 046017          245 MLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP  324 (443)
Q Consensus       245 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~l  324 (443)
                      ....+...++..+.+.+ +..   -.......++..+.+..++   ..+++|++|++++|+++.+|.   .+++|++|++
T Consensus       242 ~~~~l~~~~~~~~~~~~-l~~---l~~~~~~~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L  311 (353)
T d1jl5a_         242 LPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSLC---DLPPSLEELNVSNNKLIELPA---LPPRLERLIA  311 (353)
T ss_dssp             CCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEEC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred             ccccccccccccccccc-ccc---ccchhcccccccCcccccc---ccCCCCCEEECCCCccCcccc---ccCCCCEEEC
Confidence            12344444444433321 110   0122344455555555443   235678888888888887775   3567788888


Q ss_pred             CCCCCCccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017          325 FENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL  364 (443)
Q Consensus       325 s~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~  364 (443)
                      ++|+|+++|+        .+++|++|++++|.++++|...
T Consensus       312 ~~N~L~~l~~--------~~~~L~~L~L~~N~L~~lp~~~  343 (353)
T d1jl5a_         312 SFNHLAEVPE--------LPQNLKQLHVEYNPLREFPDIP  343 (353)
T ss_dssp             CSSCCSCCCC--------CCTTCCEEECCSSCCSSCCCCC
T ss_pred             CCCcCCcccc--------ccCCCCEEECcCCcCCCCCccc
Confidence            8888887776        4467888888888777776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=178.37  Aligned_cols=156  Identities=27%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      |.++++|++|++++|.+. .+| .++.+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+..+..+.+++
T Consensus        51 f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  127 (266)
T d1p9ag_          51 LMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (266)
T ss_dssp             GTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             hhcccccccccccccccc-ccc-cccccccccccccccccccc-cccccccccccccccccccccceeeccccccccccc
Confidence            444555555555554433 232 23455666666666655433 344556666677777777666555555566677777


Q ss_pred             eEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccc
Q 046017          275 ALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNL  352 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l  352 (443)
                      +|++++|.++.+|.. +..+++|+.|++++|+++.+| ..+..+++|++|+|++|+|+.+|+.++..     ++|+.|++
T Consensus       128 ~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~-----~~L~~L~L  202 (266)
T d1p9ag_         128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-----HLLPFAFL  202 (266)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----CCCSEEEC
T ss_pred             cccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCC-----CCCCEEEe
Confidence            777777777766543 455677777777777777665 44677777888888877777777776654     67778888


Q ss_pred             ccCCCC
Q 046017          353 SVDSGN  358 (443)
Q Consensus       353 ~~N~l~  358 (443)
                      ++|...
T Consensus       203 ~~Np~~  208 (266)
T d1p9ag_         203 HGNPWL  208 (266)
T ss_dssp             CSCCBC
T ss_pred             cCCCCC
Confidence            877553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-21  Score=179.03  Aligned_cols=219  Identities=22%  Similarity=0.257  Sum_probs=115.4

Q ss_pred             eEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCCC
Q 046017           23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNSS  101 (443)
Q Consensus        23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~~  101 (443)
                      .++.++++ ++.+|..+.  +.+++|+|++|++.+..+.+|.++++|++|++++|.+..++ ..+..+..++.++...+ 
T Consensus        15 ~v~c~~~~-L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~-   90 (284)
T d1ozna_          15 TTSCPQQG-LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN-   90 (284)
T ss_dssp             EEECCSSC-CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC-
T ss_pred             EEEcCCCC-CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc-
Confidence            44566655 567776443  46788888888765444456778888888888887776554 33333444444433321 


Q ss_pred             CCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccc
Q 046017          102 EFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTL  180 (443)
Q Consensus       102 ~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l  180 (443)
                                  +.++.+ |..+.++++|++|++                                              
T Consensus        91 ------------~~~~~l~~~~~~~l~~L~~L~l----------------------------------------------  112 (284)
T d1ozna_          91 ------------AQLRSVDPATFHGLGRLHTLHL----------------------------------------------  112 (284)
T ss_dssp             ------------TTCCCCCTTTTTTCTTCCEEEC----------------------------------------------
T ss_pred             ------------cccccccchhhcccccCCEEec----------------------------------------------
Confidence                        223333 223444444444444                                              


Q ss_pred             cccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccccc
Q 046017          181 RLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIF  260 (443)
Q Consensus       181 ~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  260 (443)
                                                ++|......+..+...++|+.+++++|.+.+..+..+..+++|++|++++|++.
T Consensus       113 --------------------------~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_         113 --------------------------DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             --------------------------TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             --------------------------CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccc
Confidence                                      444333333333444444555555554444333344444555555555555554


Q ss_pred             ccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCC
Q 046017          261 KRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       261 ~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l  329 (443)
                      +..+..+.++++|+++++++|+++.+ |..+..+++|++|++++|++.+++ ..+..+++|++|++++|.+
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            44444455555555555555555533 444555555555555555555544 3455555555555555555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.9e-21  Score=175.69  Aligned_cols=160  Identities=24%  Similarity=0.280  Sum_probs=132.8

Q ss_pred             ccCCcccceeeccccccccc-ccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017          195 LCMLKSLRFLETIACKKLER-LPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL  273 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~-~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  273 (443)
                      +..+..++.+....++.... .+..+.++++|++|++++|......+..+...++|+.+++++|.+.+..+..+..+++|
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L  155 (284)
T d1ozna_          76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL  155 (284)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch
Confidence            34556667766654444443 36678899999999999998877677778889999999999999976666778899999


Q ss_pred             ceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCCCccCcccc-cCCCCCccccccc
Q 046017          274 AALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNSDRIPEYLR-SSPTSIPSELRSL  350 (443)
Q Consensus       274 ~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l~~lp~~~~-~~~~~lp~~L~~L  350 (443)
                      ++|++++|+++.++ ..+..+++|+.+++++|+++.+ |..+..+++|++|++++|++..++.... ..     ++|++|
T Consensus       156 ~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~-----~~L~~L  230 (284)
T d1ozna_         156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL-----RALQYL  230 (284)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC-----TTCCEE
T ss_pred             hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccc-----cccCEE
Confidence            99999999999775 5678899999999999999976 6889999999999999999988886544 43     689999


Q ss_pred             ccccCCCCc
Q 046017          351 NLSVDSGNS  359 (443)
Q Consensus       351 ~l~~N~l~~  359 (443)
                      ++++|.+..
T Consensus       231 ~l~~N~l~C  239 (284)
T d1ozna_         231 RLNDNPWVC  239 (284)
T ss_dssp             ECCSSCEEC
T ss_pred             EecCCCCCC
Confidence            999997654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.4e-21  Score=175.57  Aligned_cols=63  Identities=17%  Similarity=0.204  Sum_probs=38.6

Q ss_pred             CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh
Q 046017           18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS   83 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp   83 (443)
                      ...+.+++.++++ ++.+|..+.  +++++|+|++|.+.+..+.+|.++++|++|++++|.++.+|
T Consensus         9 ~~~~~~v~C~~~~-L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~   71 (266)
T d1p9ag_           9 VASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ   71 (266)
T ss_dssp             STTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred             cCCCeEEEccCCC-CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc
Confidence            3455556777766 445665443  46777777777655444455666777777777666665544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=2.4e-19  Score=169.43  Aligned_cols=266  Identities=20%  Similarity=0.169  Sum_probs=160.5

Q ss_pred             CCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc
Q 046017           43 KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES  122 (443)
Q Consensus        43 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~  122 (443)
                      .++++|+|+++.+ +.+|+.   +++|++|++++|.++++|+.+   .+              |+.|++++|.++.++..
T Consensus        38 ~~l~~LdLs~~~L-~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~--------------L~~L~l~~n~l~~l~~l   96 (353)
T d1jl5a_          38 RQAHELELNNLGL-SSLPEL---PPHLESLVASCNSLTELPELP---QS--------------LKSLLVDNNNLKALSDL   96 (353)
T ss_dssp             HTCSEEECTTSCC-SCCCSC---CTTCSEEECCSSCCSSCCCCC---TT--------------CCEEECCSSCCSCCCSC
T ss_pred             cCCCEEEeCCCCC-CCCCCC---CCCCCEEECCCCCCcccccch---hh--------------hhhhhhhhcccchhhhh
Confidence            3689999999875 468863   578999999999999888643   33              44445555666666541


Q ss_pred             ccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCCC-CCCccccccCcccccccccccCCCCCcccCCcc
Q 046017          123 IGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPKI-ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSL  195 (443)
Q Consensus       123 l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~  195 (443)
                         .+.|++|++++|.+.      .+++|++|+++++ .+...+.. ..+..+.+....              ..-+..+
T Consensus        97 ---p~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~l~~~~~~--------------~~~~~~l  158 (353)
T d1jl5a_          97 ---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQ--------------LEELPEL  158 (353)
T ss_dssp             ---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC--------------CSSCCCC
T ss_pred             ---ccccccccccccccccccchhhhccceeeccccc-cccccccccccccchhhcccc--------------ccccccc
Confidence               246999999999765      6788999999885 44444444 445444442111              1112234


Q ss_pred             cCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCce
Q 046017          196 CMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA  275 (443)
Q Consensus       196 ~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  275 (443)
                      ..++.++.+.+++|..... +..   ....+.+...+ .....++ .+..++.|+.+++++|... .++.   ...++..
T Consensus       159 ~~l~~l~~L~l~~n~~~~~-~~~---~~~~~~l~~~~-~~~~~~~-~~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~  228 (353)
T d1jl5a_         159 QNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGN-NILEELP-ELQNLPFLTTIYADNNLLK-TLPD---LPPSLEA  228 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSSCCS-SCCS---CCTTCCE
T ss_pred             cccccceeccccccccccc-ccc---ccccccccccc-ccccccc-ccccccccccccccccccc-cccc---ccccccc
Confidence            5666777777776554321 111   12233344333 2222333 2345666666666666542 2332   2234455


Q ss_pred             EEecCCCCcccChhcc----------------C-CCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCccccc
Q 046017          276 LIVKGTAIREVPESLG----------------Y-LSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRS  338 (443)
Q Consensus       276 L~l~~n~l~~lp~~~~----------------~-l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~  338 (443)
                      +.+.++.+...+....                . .......++..+.+..++   ..+++|++|++++|+|+.+|..   
T Consensus       229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~lp~~---  302 (353)
T d1jl5a_         229 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC---DLPPSLEELNVSNNKLIELPAL---  302 (353)
T ss_dssp             EECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC---CCCTTCCEEECCSSCCSCCCCC---
T ss_pred             cccccccccccccccccccccccccccccccccccchhcccccccCcccccc---ccCCCCCEEECCCCccCccccc---
Confidence            5555554443322110                0 123345555555555444   2467999999999999999973   


Q ss_pred             CCCCCcccccccccccCCCCcccCChhhhh
Q 046017          339 SPTSIPSELRSLNLSVDSGNSLNLDLNKLS  368 (443)
Q Consensus       339 ~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~  368 (443)
                           +++|+.|++++|.++.+|....++.
T Consensus       303 -----~~~L~~L~L~~N~L~~l~~~~~~L~  327 (353)
T d1jl5a_         303 -----PPRLERLIASFNHLAEVPELPQNLK  327 (353)
T ss_dssp             -----CTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred             -----cCCCCEEECCCCcCCccccccCCCC
Confidence                 3689999999999999986544433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.2e-17  Score=146.20  Aligned_cols=123  Identities=23%  Similarity=0.240  Sum_probs=58.9

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+...  ..++++++|+
T Consensus       103 l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~  176 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLT  176 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             cccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccce
Confidence            34555666666655544332  1233445555555555443322  1234455555555555544321  1244455555


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCC
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPF  325 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls  325 (443)
                      +|++++|+++.++. +..+++|++|++++|++++++. +..+++|++|+++
T Consensus       177 ~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         177 TLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             ecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            55555555554443 4445555555555555555442 4455555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.4e-18  Score=149.77  Aligned_cols=207  Identities=21%  Similarity=0.249  Sum_probs=137.2

Q ss_pred             CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCC
Q 046017           20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKN   99 (443)
Q Consensus        20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~   99 (443)
                      ++..++++.++.....  .++.+.+|++|++.+|.+. .++ .+.++++|++|++++|.++.++. +..+++|++++++ 
T Consensus        20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~-   93 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELS-   93 (227)
T ss_dssp             HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECC-
T ss_pred             HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeecccc-ccccccccccccc-
Confidence            3444555555533322  2456778888888888754 453 57788888888888888776543 5555555555544 


Q ss_pred             CCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccccc
Q 046017          100 SSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSST  179 (443)
Q Consensus       100 ~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~  179 (443)
                                   +|.++.++. +.++++|+.++++++...                 .+                    
T Consensus        94 -------------~n~~~~i~~-l~~l~~L~~l~l~~~~~~-----------------~~--------------------  122 (227)
T d1h6ua2          94 -------------GNPLKNVSA-IAGLQSIKTLDLTSTQIT-----------------DV--------------------  122 (227)
T ss_dssp             -------------SCCCSCCGG-GTTCTTCCEEECTTSCCC-----------------CC--------------------
T ss_pred             -------------ccccccccc-cccccccccccccccccc-----------------cc--------------------
Confidence                         455666653 667777777777765211                 00                    


Q ss_pred             ccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccc
Q 046017          180 LRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI  259 (443)
Q Consensus       180 l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~  259 (443)
                                   ..+...+.++.+.++.+......  .+..+++|++|++++|.....  ..+.++++|++|++++|++
T Consensus       123 -------------~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         123 -------------TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             -------------GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             -------------chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence                         11334556777777766554432  355677888888888765432  2467788888888888877


Q ss_pred             cccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccC
Q 046017          260 FKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSN  303 (443)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~  303 (443)
                      .+ ++ .++.+++|++|++++|+++.+++ +..+++|+.|++++
T Consensus       186 ~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SD-IS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CC-CG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             CC-Ch-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            43 43 37788889999999988888875 78888999988864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.8e-17  Score=144.41  Aligned_cols=155  Identities=18%  Similarity=0.111  Sum_probs=94.7

Q ss_pred             ccCCcccceeecccc-cccccccccccCCCCcceeeccCccCCCCCCc-hhhcCCCCCcEecccccccccCCCCCCCCC-
Q 046017          195 LCMLKSLRFLETIAC-KKLERLPESLGQLALLCELKMIKCSSFESLPS-SLCMLKSLTPLAIIDCKIFKRLPNELGNLK-  271 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n-~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-  271 (443)
                      |..+++++++.+..+ +.....+..+.++++|+.+++++|.+....+. .+..+..+..+...++.+...-+..+.+++ 
T Consensus        74 f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~  153 (242)
T d1xwdc1          74 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF  153 (242)
T ss_dssp             EESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccc
Confidence            455666666666543 34444445566777777777777655432211 122233344444444444333334454443 


Q ss_pred             CCceEEecCCCCcccChhccCCCCCCEE-EccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccc
Q 046017          272 CLAALIVKGTAIREVPESLGYLSSLAKL-ELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRS  349 (443)
Q Consensus       272 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L-~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~  349 (443)
                      .++.|++++|+++.++......++++++ ++++|+++.+|. .+.++++|++|++++|+|+.+|.....-   + +.|+.
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~---l-~~L~~  229 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---L-KKLRA  229 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT---C-CEEES
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC---C-ccccc
Confidence            6788888888888887766666666655 456678888874 4788888899999888888887653221   2 46666


Q ss_pred             cccc
Q 046017          350 LNLS  353 (443)
Q Consensus       350 L~l~  353 (443)
                      +++.
T Consensus       230 l~~~  233 (242)
T d1xwdc1         230 RSTY  233 (242)
T ss_dssp             SSEE
T ss_pred             CcCC
Confidence            6654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.9e-16  Score=137.04  Aligned_cols=132  Identities=23%  Similarity=0.294  Sum_probs=101.6

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+. + .++++++|++|++++|.... ++ .+..++.|+.|++++|.....  ..+..+++|+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~  131 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLN  131 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             cccCCCcCcCccccccccCc-c-cccCCccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhH
Confidence            56778888888888776553 3 27788888888888876543 33 477888888888888876442  3467788888


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPE  334 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~  334 (443)
                      .|++++|++..++ .+..+++|++|++.+|+++.+++ +.++++|++|++++|++++++.
T Consensus       132 ~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~  189 (199)
T d2omxa2         132 RLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISV  189 (199)
T ss_dssp             EEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             Hhhhhhhhhcccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCcc
Confidence            8888888888766 37778888888888888888764 7888888888888888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.6e-16  Score=138.72  Aligned_cols=122  Identities=28%  Similarity=0.296  Sum_probs=62.1

Q ss_pred             cCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCce
Q 046017          196 CMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA  275 (443)
Q Consensus       196 ~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  275 (443)
                      +.+++|++|++++|.+.+ +| .+..+++|+.|++++|.... + ..+..++.++.+++++|.+..  +..+..+++|++
T Consensus        87 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~  160 (210)
T d1h6ta2          87 ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDT  160 (210)
T ss_dssp             TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSE
T ss_pred             ccCccccccccccccccc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc--cccccccccccc
Confidence            344555555555544332 32 34455555555555554322 2 234455555555555555432  123444555555


Q ss_pred             EEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCC
Q 046017          276 LIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPF  325 (443)
Q Consensus       276 L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls  325 (443)
                      +++++|+++.+++ +..+++|++|++++|+++.+| .+..+++|++|+|+
T Consensus       161 l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         161 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             ccccccccccccc-ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEcc
Confidence            5555555555443 455555555555555555554 35555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.6e-16  Score=137.41  Aligned_cols=146  Identities=25%  Similarity=0.236  Sum_probs=119.6

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +..+++|++|++++|.+.+ ++ .++.+++|++|++++|.+.+ +| .+..+++|+.|++++|.... + ..+..++.++
T Consensus        64 l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~  137 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE  137 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred             HhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccccccccccc-c-cccccccccc
Confidence            6678899999999987665 43 46789999999999987654 54 57889999999999988743 3 4577889999


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV  354 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~  354 (443)
                      .+++++|.++..+ .+..+++|+.+++++|+++++++ +..+++|++|++++|+++++|. +..+     ++|++|++++
T Consensus       138 ~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~-l~~l-----~~L~~L~Ls~  209 (210)
T d1h6ta2         138 SLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGL-----KNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTC-----TTCSEEEEEE
T ss_pred             ccccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChh-hcCC-----CCCCEEEccC
Confidence            9999999988765 36778999999999999998875 8899999999999999998874 5554     6899999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.5e-16  Score=134.64  Aligned_cols=120  Identities=22%  Similarity=0.285  Sum_probs=89.0

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      ++++++|++|++++|.... ++ .+..++.|+.|++++|.....  ..+..+++|+.|++++|++. .+ +.+..+++|+
T Consensus        80 l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~  153 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQ  153 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCS
T ss_pred             ccCCccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-cc-cccccccccc
Confidence            5566677777777765433 32 366777888888877665442  34667888888888888764 33 3477788889


Q ss_pred             eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCee
Q 046017          275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYL  322 (443)
Q Consensus       275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L  322 (443)
                      +|++.+|+++.+++ +..+++|++|++++|++++++ .++.+++|++|
T Consensus       154 ~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         154 QLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            99999888888764 788899999999999998886 47888888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9e-18  Score=164.03  Aligned_cols=309  Identities=19%  Similarity=0.171  Sum_probs=163.3

Q ss_pred             CCcceEEecCCCCCC-cCCccccCCCCCcEEecccccccc----ccccccCCCCcccEEEeecCchhh-----hhhhhcc
Q 046017           19 PCSCGLRLKNCSSLE-SFPSSLCVLKSLRSLQIIDCKKFE----RLLDELGNLETLLVLRVEGAAIRE-----LSQSLGQ   88 (443)
Q Consensus        19 ~~L~~L~ls~~~~~~-~~p~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~   88 (443)
                      .+|++||++++++.. .+...+..++++|+|+|++|.+..    .++..+..+++|++||+++|.++.     +...+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            478999999998654 234446678999999999998763    456677899999999999999863     2233322


Q ss_pred             -CCCCcEEecCCCCCCCCccEEEEeCCCCcc-----cCccccCCCCCCEEeccCCCCC----------------------
Q 046017           89 -LALLSELELKNSSEFEYLRVLRVEGAAIRE-----LPESIGKSTLLSELELKNCSEL----------------------  140 (443)
Q Consensus        89 -l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~-----lp~~l~~l~~L~~L~l~~n~~~----------------------  140 (443)
                       ..+|++|++++|              .++.     ++..+..+++|++|++++|.+.                      
T Consensus        82 ~~~~L~~L~L~~n--------------~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~  147 (460)
T d1z7xw1          82 PSCKIQKLSLQNC--------------CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ  147 (460)
T ss_dssp             TTCCCCEEECTTS--------------CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             CCCCCCEEECCCC--------------Cccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccc
Confidence             235666666654              3321     2333444455555555554322                      


Q ss_pred             -------------------CCCCcCEEEccCCCCCCC----C----CCC-CCCccccccCcccccccccccCCCC----C
Q 046017          141 -------------------KLKSLRRIKMSKCSNLKR----F----PKI-ASCNKVGITGIKRLSSTLRLKNCSS----L  188 (443)
Q Consensus       141 -------------------~l~~L~~L~l~~~~~l~~----~----~~~-~~l~~L~l~~l~~l~~~l~~~~~~~----l  188 (443)
                                         ....++.++++++.....    +    ... .....+..            ..+..    .
T Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~------------~~~~~~~~~~  215 (460)
T d1z7xw1         148 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL------------ESCGVTSDNC  215 (460)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC------------TTSCCBTTHH
T ss_pred             ccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccc------------ccccccchhh
Confidence                               223334444433211100    0    000 00000100            01100    0


Q ss_pred             cccCCcccCCcccceeecccccccc-----cccccccCCCCcceeeccCccCCCC----CCchhhcCCCCCcEecccccc
Q 046017          189 ESLPSSLCMLKSLRFLETIACKKLE-----RLPESLGQLALLCELKMIKCSSFES----LPSSLCMLKSLTPLAIIDCKI  259 (443)
Q Consensus       189 ~~lp~~~~~l~~L~~L~ls~n~~~~-----~~p~~l~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~  259 (443)
                      ..+...+...+.++.+++++|....     ..+........++.+++++|.+...    ....+...+.++.+++++|.+
T Consensus       216 ~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i  295 (460)
T d1z7xw1         216 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  295 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             hcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0111123344566777776654322     1223334456677777777655432    222344566777777777765


Q ss_pred             cccCCC----C-CCCCCCCceEEecCCCCcc-----cChhccCCCCCCEEEccCCCCCC-----CChhhh-CCCCCCeee
Q 046017          260 FKRLPN----E-LGNLKCLAALIVKGTAIRE-----VPESLGYLSSLAKLELSNNNLKR-----TPESLY-QLSSLKYLK  323 (443)
Q Consensus       260 ~~~~~~----~-l~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~n~l~~-----lp~~l~-~l~~L~~L~  323 (443)
                      ......    . ......|+.+++++|.++.     +...+...++|++|+|++|+++.     ++..+. ..+.|++|+
T Consensus       296 ~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~  375 (460)
T d1z7xw1         296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  375 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             cccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEE
Confidence            321111    0 1223467777777776652     22233445667777777777652     233332 345677777


Q ss_pred             CCCCCCCc-----cCcccccCCCCCcccccccccccCCCC
Q 046017          324 PFENNSDR-----IPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       324 ls~n~l~~-----lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      +++|.|+.     +++.+...     ++|++|++++|.++
T Consensus       376 Ls~n~i~~~~~~~l~~~l~~~-----~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         376 LADCDVSDSSCSSLAATLLAN-----HSLRELDLSNNCLG  410 (460)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHC-----CCCCEEECCSSSCC
T ss_pred             CCCCCCChHHHHHHHHHHhcC-----CCCCEEECCCCcCC
Confidence            77777653     33333332     56777777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.1e-15  Score=133.36  Aligned_cols=223  Identities=17%  Similarity=0.184  Sum_probs=120.1

Q ss_pred             ceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhh-hh-hhhccCCCCcEEecCC
Q 046017           22 CGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRE-LS-QSLGQLALLSELELKN   99 (443)
Q Consensus        22 ~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-lp-~~~~~l~~L~~L~ls~   99 (443)
                      ++++.++.. ++.+|..+.  +++++|++++|.+....+.+|.++++|++|++++|.+.. ++ ..|..++.++++.+..
T Consensus        11 ~~i~c~~~~-l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESK-VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCS-CSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCC-CCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            567777665 557776443  478888888877554334467788888888888877653 33 3455555555554433


Q ss_pred             CCCCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccc
Q 046017          100 SSEFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS  178 (443)
Q Consensus       100 ~~~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~  178 (443)
                      +             +.+..+ +..+.++++|+++++++|                 .+..++.                 
T Consensus        88 ~-------------n~l~~~~~~~~~~l~~L~~l~l~~~-----------------~l~~~~~-----------------  120 (242)
T d1xwdc1          88 A-------------NNLLYINPEAFQNLPNLQYLLISNT-----------------GIKHLPD-----------------  120 (242)
T ss_dssp             C-------------TTCCEECTTSEECCTTCCEEEEESC-----------------CCCSCCC-----------------
T ss_pred             c-------------ccccccccccccccccccccccchh-----------------hhccccc-----------------
Confidence            1             223333 334556666666666654                 1111110                 


Q ss_pred             cccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcC-CCCCcEecccc
Q 046017          179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCML-KSLTPLAIIDC  257 (443)
Q Consensus       179 ~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l-~~L~~L~l~~n  257 (443)
                                   ...+..++.+..+...++.+                        ...-+..+..+ ..++.|++++|
T Consensus       121 -------------~~~~~~l~~l~~~~~~n~~l------------------------~~i~~~~~~~~~~~l~~L~l~~n  163 (242)
T d1xwdc1         121 -------------VHKIHSLQKVLLDIQDNINI------------------------HTIERNSFVGLSFESVILWLNKN  163 (242)
T ss_dssp             -------------CTTTCBSSCEEEEEESCTTC------------------------CEECTTSSTTSBSSCEEEECCSS
T ss_pred             -------------cccccccccccccccccccc------------------------ccccccccccccccceeeecccc
Confidence                         00111222333333222221                        11111222222 25666667666


Q ss_pred             cccccCCCCCCCCCCCceE-EecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCc
Q 046017          258 KIFKRLPNELGNLKCLAAL-IVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPE  334 (443)
Q Consensus       258 ~~~~~~~~~l~~l~~L~~L-~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~  334 (443)
                      ++.+ ++......++++++ ++++|+++.+|.. +..+++|++|++++|+++.+|. .+.+++.|+.+++  +.++.+|.
T Consensus       164 ~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~--~~l~~lp~  240 (242)
T d1xwdc1         164 GIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT  240 (242)
T ss_dssp             CCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE--ESSSCSCC
T ss_pred             cccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC--CCCCcCCC
Confidence            6643 34333444555444 4566678877653 6778888888888888888874 3455555554443  44555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=5.4e-16  Score=133.36  Aligned_cols=108  Identities=19%  Similarity=0.142  Sum_probs=60.0

Q ss_pred             CCcceeeccCccCCCCC-CchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEE
Q 046017          223 ALLCELKMIKCSSFESL-PSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLE  300 (443)
Q Consensus       223 ~~L~~L~ls~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~  300 (443)
                      +.+++|+|++|.+.+.+ +..|..+++|++|++++|.+.+..+..+..+++|++|++++|+|+.+|+ .|..+++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            34555555555554322 3344555566666666555555555555555566666666666655533 345556666666


Q ss_pred             ccCCCCCCCC-hhhhCCCCCCeeeCCCCCCC
Q 046017          301 LSNNNLKRTP-ESLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       301 ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~  330 (443)
                      |++|+|+.+| ..+..+++|++|+|++|.+.
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccc
Confidence            6666666554 34555666666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.7e-17  Score=160.53  Aligned_cols=311  Identities=22%  Similarity=0.171  Sum_probs=197.6

Q ss_pred             cCCCcceEEecCCCCCC----cCCccccCCCCCcEEecccccccc----ccccccC-CCCcccEEEeecCchh-----hh
Q 046017           17 ERPCSCGLRLKNCSSLE----SFPSSLCVLKSLRSLQIIDCKKFE----RLLDELG-NLETLLVLRVEGAAIR-----EL   82 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~----~~p~~~~~l~~L~~L~L~~n~~~~----~~p~~~~-~l~~L~~L~l~~n~l~-----~l   82 (443)
                      .++++++|+|++|.+..    .+..++..+++|++|+|++|.+..    .+...+. ...+|++|++++|.++     .+
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l  104 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  104 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccc
Confidence            46899999999998542    445567889999999999998753    2333333 2357999999999885     35


Q ss_pred             hhhhccCCCCcEEecCCCC-------------------------------------------CCCCccEEEEeCCCCcc-
Q 046017           83 SQSLGQLALLSELELKNSS-------------------------------------------EFEYLRVLRVEGAAIRE-  118 (443)
Q Consensus        83 p~~~~~l~~L~~L~ls~~~-------------------------------------------~l~~L~~L~l~~n~~~~-  118 (443)
                      +..+..+++|++|++++|.                                           ....++.+.++++.... 
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~  184 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  184 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             cchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccccc
Confidence            6778889999999998873                                           01445555555544221 


Q ss_pred             ----cCccc-cCCCCCCEEeccCCCCC------------CCCCcCEEEccCCCCCCCCCCCCCCccccccCccccccccc
Q 046017          119 ----LPESI-GKSTLLSELELKNCSEL------------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLR  181 (443)
Q Consensus       119 ----lp~~l-~~l~~L~~L~l~~n~~~------------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~  181 (443)
                          +...+ ........+++..+...            ..+.++.++++++......                      
T Consensus       185 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~----------------------  242 (460)
T d1z7xw1         185 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG----------------------  242 (460)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH----------------------
T ss_pred             cccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc----------------------
Confidence                11111 11234455555555432            4566667776664211000                      


Q ss_pred             ccCCCCCcccCCcccCCcccceeeccccccccc----ccccccCCCCcceeeccCccCCCCCCchh-----hcCCCCCcE
Q 046017          182 LKNCSSLESLPSSLCMLKSLRFLETIACKKLER----LPESLGQLALLCELKMIKCSSFESLPSSL-----CMLKSLTPL  252 (443)
Q Consensus       182 ~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~----~p~~l~~l~~L~~L~ls~n~~~~~~p~~~-----~~l~~L~~L  252 (443)
                           ....++........++.+++++|.+...    ....+...+.++.+++++|.+.......+     .....|+.+
T Consensus       243 -----~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l  317 (460)
T d1z7xw1         243 -----MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  317 (460)
T ss_dssp             -----HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             -----cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence                 0001112233456788999988776533    23345567888999999887643211111     124578999


Q ss_pred             ecccccccccCCC----CCCCCCCCceEEecCCCCc-----ccChhcc-CCCCCCEEEccCCCCCC-----CChhhhCCC
Q 046017          253 AIIDCKIFKRLPN----ELGNLKCLAALIVKGTAIR-----EVPESLG-YLSSLAKLELSNNNLKR-----TPESLYQLS  317 (443)
Q Consensus       253 ~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~-----~lp~~~~-~l~~L~~L~ls~n~l~~-----lp~~l~~l~  317 (443)
                      ++++|.+......    .+...++|++|++++|.++     .++..+. ..+.|++|++++|+++.     +++.+..++
T Consensus       318 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             cccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC
Confidence            9999877543222    2344568999999999886     3444443 45779999999999973     455677889


Q ss_pred             CCCeeeCCCCCCCc-----cCcccccCCCCCcccccccccccCCCC
Q 046017          318 SLKYLKPFENNSDR-----IPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       318 ~L~~L~ls~n~l~~-----lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      +|++|++++|+|+.     +...+..    -...|+.|++++|.+.
T Consensus       398 ~L~~L~Ls~N~i~~~g~~~l~~~l~~----~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         398 SLRELDLSNNCLGDAGILQLVESVRQ----PGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CCCEEECCSSSCCHHHHHHHHHHHTS----TTCCCCEEECTTCCCC
T ss_pred             CCCEEECCCCcCCHHHHHHHHHHHHh----CCCccCEEECCCCCCC
Confidence            99999999999864     2222221    1146899999887664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.1e-15  Score=131.48  Aligned_cols=154  Identities=16%  Similarity=0.060  Sum_probs=112.6

Q ss_pred             cccceeecccccccccc-cccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEE
Q 046017          199 KSLRFLETIACKKLERL-PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALI  277 (443)
Q Consensus       199 ~~L~~L~ls~n~~~~~~-p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  277 (443)
                      +++++|+|++|.+.+.+ +..|..+++|+.|++++|.+....+..+..+++|++|++++|++....+..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            47888888888776543 45677888888899888888888888888888999999999988766667788899999999


Q ss_pred             ecCCCCcccCh-hccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCcccccccccccC
Q 046017          278 VKGTAIREVPE-SLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSELRSLNLSVD  355 (443)
Q Consensus       278 l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~L~~L~l~~N  355 (443)
                      |++|+|+.+|+ .|..+++|++|+|++|.+........-...++.+.+..+.++ ..|..+        ..++.++++.|
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l--------~~~~l~~L~~n  180 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV--------RDVQIKDLPHS  180 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTT--------TTSBGGGSCTT
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhh--------cCCEeeecCHh
Confidence            99999998764 467888999999999988755432111123455566666663 445432        45566777777


Q ss_pred             CCCcc
Q 046017          356 SGNSL  360 (443)
Q Consensus       356 ~l~~l  360 (443)
                      .++..
T Consensus       181 ~l~C~  185 (192)
T d1w8aa_         181 EFKCS  185 (192)
T ss_dssp             TCCCC
T ss_pred             hCcCC
Confidence            66543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6e-15  Score=134.82  Aligned_cols=174  Identities=18%  Similarity=0.225  Sum_probs=93.0

Q ss_pred             CCCCCcEEecccccccc-ccccccCCCCcccEEEeecCchh-hhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcc
Q 046017           41 VLKSLRSLQIIDCKKFE-RLLDELGNLETLLVLRVEGAAIR-ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRE  118 (443)
Q Consensus        41 ~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~  118 (443)
                      ....|++|++++|.+.. .+...+.++++|++|+++++.++ ..+..+..+++|++|++++|..             ++.
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~-------------itd  110 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG-------------FSE  110 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS-------------CCH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccc-------------ccc
Confidence            34456666666655443 23344555666666666666554 4444555555555555555432             221


Q ss_pred             --cCccccCCCCCCEEeccCCCCC-----------CCCCcCEEEccCCCC-CCCCCCCCCCccccccCcccccccccccC
Q 046017          119 --LPESIGKSTLLSELELKNCSEL-----------KLKSLRRIKMSKCSN-LKRFPKIASCNKVGITGIKRLSSTLRLKN  184 (443)
Q Consensus       119 --lp~~l~~l~~L~~L~l~~n~~~-----------~l~~L~~L~l~~~~~-l~~~~~~~~l~~L~l~~l~~l~~~l~~~~  184 (443)
                        +......+++|++|++++|...           ..++|+.|++++|.. ++.                          
T Consensus       111 ~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~--------------------------  164 (284)
T d2astb2         111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--------------------------  164 (284)
T ss_dssp             HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--------------------------
T ss_pred             cccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccc--------------------------
Confidence              1111234555666666555332           235566666655311 110                          


Q ss_pred             CCCCcccCCcccCCcccceeecccccc-cccccccccCCCCcceeeccCcc-CCCCCCchhhcCCCCCcEecccc
Q 046017          185 CSSLESLPSSLCMLKSLRFLETIACKK-LERLPESLGQLALLCELKMIKCS-SFESLPSSLCMLKSLTPLAIIDC  257 (443)
Q Consensus       185 ~~~l~~lp~~~~~l~~L~~L~ls~n~~-~~~~p~~l~~l~~L~~L~ls~n~-~~~~~p~~~~~l~~L~~L~l~~n  257 (443)
                          ..+.....++++|++|++++|.. .+.....+..+++|++|++++|. +.......+.++++|+.|++++|
T Consensus       165 ----~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         165 ----SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ----HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ----ccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence                11112234566777777777653 33455566677777777777764 33333445667777888877776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=7.1e-15  Score=116.40  Aligned_cols=104  Identities=25%  Similarity=0.302  Sum_probs=61.0

Q ss_pred             ceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCC
Q 046017          226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNN  305 (443)
Q Consensus       226 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~  305 (443)
                      |.|++++|.+. .++ .+..+++|++|++++|++ ..+|..++.+++|++|++++|.|+.+|. +..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCcc-CcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCc
Confidence            35666665554 333 355666666666666665 3455556666666666666666666553 5566666666666666


Q ss_pred             CCCCC--hhhhCCCCCCeeeCCCCCCCccC
Q 046017          306 LKRTP--ESLYQLSSLKYLKPFENNSDRIP  333 (443)
Q Consensus       306 l~~lp--~~l~~l~~L~~L~ls~n~l~~lp  333 (443)
                      ++.+|  ..+..+++|++|++++|++..++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            66554  24556666666666666664443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=4.3e-15  Score=117.66  Aligned_cols=105  Identities=24%  Similarity=0.201  Sum_probs=78.2

Q ss_pred             CcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCC
Q 046017          250 TPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       250 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l  329 (443)
                      |+|++++|++. .++ .+..+++|++|++++|+|+.+|..+..+++|+.|++++|+++.+|. +..+++|++|++++|++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCcc
Confidence            46788888774 444 3777888888888888888887777788888888888888887764 77888888888888888


Q ss_pred             CccCc--ccccCCCCCcccccccccccCCCCcccC
Q 046017          330 DRIPE--YLRSSPTSIPSELRSLNLSVDSGNSLNL  362 (443)
Q Consensus       330 ~~lp~--~~~~~~~~lp~~L~~L~l~~N~l~~l~~  362 (443)
                      +++|.  .+..+     ++|++|++++|.++..+.
T Consensus        78 ~~~~~~~~l~~~-----~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          78 QQSAAIQPLVSC-----PRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             CSSSTTGGGGGC-----TTCCEEECTTSGGGGSSS
T ss_pred             CCCCCchhhcCC-----CCCCEEECCCCcCCcCcc
Confidence            77764  34433     578888888887766543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.1e-15  Score=136.74  Aligned_cols=208  Identities=19%  Similarity=0.213  Sum_probs=138.7

Q ss_pred             cCCCcceEEecCCCCCCc-CCccccCCCCCcEEeccccccccccccccCCCCcccEEEeec-Cchh--hhhhhhccCCCC
Q 046017           17 ERPCSCGLRLKNCSSLES-FPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIR--ELSQSLGQLALL   92 (443)
Q Consensus        17 ~~~~L~~L~ls~~~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~-n~l~--~lp~~~~~l~~L   92 (443)
                      ...+|++||+++|.+... ++..+..+++|++|++++|.+.+..+..++++++|++|++++ +.++  .+......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            456899999999875543 455578999999999999988777788899999999999999 5675  344555678888


Q ss_pred             cEEecCCCCCCCCccEEEEeCCCCcccCcccc-CCCCCCEEeccCCCC-C----------CCCCcCEEEccCCCCCCCCC
Q 046017           93 SELELKNSSEFEYLRVLRVEGAAIRELPESIG-KSTLLSELELKNCSE-L----------KLKSLRRIKMSKCSNLKRFP  160 (443)
Q Consensus        93 ~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~-~l~~L~~L~l~~n~~-~----------~l~~L~~L~l~~~~~l~~~~  160 (443)
                      ++|++++|..+..           ..+...+. ..++|+.|+++++.. .          .+++|++|++++|..++.  
T Consensus       124 ~~L~ls~c~~~~~-----------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd--  190 (284)
T d2astb2         124 DELNLSWCFDFTE-----------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN--  190 (284)
T ss_dssp             CEEECCCCTTCCH-----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG--
T ss_pred             ccccccccccccc-----------ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc--
Confidence            8888888643210           01111121 235566666665421 1          456777777776654432  


Q ss_pred             CCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccc-cccccccccCCCCcceeeccCccCCCCC
Q 046017          161 KIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKK-LERLPESLGQLALLCELKMIKCSSFESL  239 (443)
Q Consensus       161 ~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~-~~~~p~~l~~l~~L~~L~ls~n~~~~~~  239 (443)
                                                   .....+.++++|++|++++|.. .......++++++|+.|++++|-..+.+
T Consensus       191 -----------------------------~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l  241 (284)
T d2astb2         191 -----------------------------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL  241 (284)
T ss_dssp             -----------------------------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCH
T ss_pred             -----------------------------hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHH
Confidence                                         2234466788999999999754 4444556788999999999997333333


Q ss_pred             CchhhcCCCCCcEecccccccccCCCCCCC
Q 046017          240 PSSLCMLKSLTPLAIIDCKIFKRLPNELGN  269 (443)
Q Consensus       240 p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  269 (443)
                      ......+++|   .+..+.++...++.++.
T Consensus       242 ~~l~~~lp~L---~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         242 QLLKEALPHL---QINCSHFTTIARPTIGN  268 (284)
T ss_dssp             HHHHHHSTTS---EESCCCSCCTTCSSCSS
T ss_pred             HHHHHhCccc---cccCccCCCCCCCccCc
Confidence            3333445554   45666665554554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.4e-14  Score=118.96  Aligned_cols=126  Identities=23%  Similarity=0.260  Sum_probs=94.6

Q ss_pred             ccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCC
Q 046017          219 LGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLA  297 (443)
Q Consensus       219 l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~  297 (443)
                      +.+...+++|++++|.+. .++..+..+++|+.|++++|++. .++ .+..+++|++|++++|+++.++.. +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            446667888888887654 34666667888888888888875 343 477888889999999988888754 35688899


Q ss_pred             EEEccCCCCCCCCh--hhhCCCCCCeeeCCCCCCCccCcc----cccCCCCCccccccccc
Q 046017          298 KLELSNNNLKRTPE--SLYQLSSLKYLKPFENNSDRIPEY----LRSSPTSIPSELRSLNL  352 (443)
Q Consensus       298 ~L~ls~n~l~~lp~--~l~~l~~L~~L~ls~n~l~~lp~~----~~~~~~~lp~~L~~L~l  352 (443)
                      .|++++|+++.+++  .+..+++|++|++++|.++..|..    +..+     ++|+.||-
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~l-----p~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV-----PQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC-----TTCSEETT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHC-----CCcCeeCC
Confidence            99999998887763  678888999999999988877752    3332     47777763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=4.5e-15  Score=139.67  Aligned_cols=139  Identities=17%  Similarity=0.144  Sum_probs=90.5

Q ss_pred             CCcccceeecccccccc----cccccccCCCCcceeeccCccCCCC-----CCchhhcCCCCCcEeccccccccc----C
Q 046017          197 MLKSLRFLETIACKKLE----RLPESLGQLALLCELKMIKCSSFES-----LPSSLCMLKSLTPLAIIDCKIFKR----L  263 (443)
Q Consensus       197 ~l~~L~~L~ls~n~~~~----~~p~~l~~l~~L~~L~ls~n~~~~~-----~p~~~~~l~~L~~L~l~~n~~~~~----~  263 (443)
                      ..+.|+.+.+++|.+..    .+...+...+.|++|++++|.+...     +...+...++|+.|++++|.+...    +
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc
Confidence            34456666666655432    2333445566777777777765431     223355677888888888876332    3


Q ss_pred             CCCCCCCCCCceEEecCCCCcc-----cChhccC--CCCCCEEEccCCCCCC-----CChhhh-CCCCCCeeeCCCCCCC
Q 046017          264 PNELGNLKCLAALIVKGTAIRE-----VPESLGY--LSSLAKLELSNNNLKR-----TPESLY-QLSSLKYLKPFENNSD  330 (443)
Q Consensus       264 ~~~l~~l~~L~~L~l~~n~l~~-----lp~~~~~--l~~L~~L~ls~n~l~~-----lp~~l~-~l~~L~~L~ls~n~l~  330 (443)
                      ...+..+++|++|++++|.|+.     +-..+..  .+.|++|++++|+++.     +...+. +++.|++|++++|++.
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            3445677888888988888872     3333333  3679999999999872     344453 6789999999999997


Q ss_pred             ccCcc
Q 046017          331 RIPEY  335 (443)
Q Consensus       331 ~lp~~  335 (443)
                      .-...
T Consensus       316 ~~~~~  320 (344)
T d2ca6a1         316 EEDDV  320 (344)
T ss_dssp             TTSHH
T ss_pred             CcchH
Confidence            65543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-14  Score=119.08  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=106.3

Q ss_pred             ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017          195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA  274 (443)
Q Consensus       195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  274 (443)
                      +.+..++++|++++|.+. .++..+..+++|+.|++++|.+. .++ .+..+++|++|++++|++....+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            567788999999997765 45666678999999999998865 443 578899999999999998654444456799999


Q ss_pred             eEEecCCCCcccCh--hccCCCCCCEEEccCCCCCCCCh----hhhCCCCCCeeeC
Q 046017          275 ALIVKGTAIREVPE--SLGYLSSLAKLELSNNNLKRTPE----SLYQLSSLKYLKP  324 (443)
Q Consensus       275 ~L~l~~n~l~~lp~--~~~~l~~L~~L~ls~n~l~~lp~----~l~~l~~L~~L~l  324 (443)
                      +|++++|+++.++.  .+..+++|++|++++|.++..|.    .+..+|+|++||-
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            99999999997764  57889999999999999998874    5788999999983

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.4e-14  Score=136.15  Aligned_cols=263  Identities=14%  Similarity=0.080  Sum_probs=166.0

Q ss_pred             ccccccCCCCcccEEEeecCchh-----hhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEE
Q 046017           58 RLLDELGNLETLLVLRVEGAAIR-----ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSEL  132 (443)
Q Consensus        58 ~~p~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L  132 (443)
                      .+...+.....|+.|++++|.+.     .+...+...++|+.++++++..- ....  .....+..+...+...++|++|
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~-~~~~--~~~~~~~~l~~~l~~~~~L~~L   98 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKD--EIPEALRLLLQALLKCPKLHTV   98 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-SCGG--GSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccc-cccc--ccchHHHHHHHHHhhCCCcccc
Confidence            45556777888999999998874     34455666667777776653210 0000  0000011222334556677777


Q ss_pred             eccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeeccccccc
Q 046017          133 ELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKL  212 (443)
Q Consensus       133 ~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~  212 (443)
                      ++++|.+                 +.                           .....+...+...++|++|++++|.+.
T Consensus        99 ~L~~n~i-----------------~~---------------------------~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          99 RLSDNAF-----------------GP---------------------------TAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             ECCSCCC-----------------CT---------------------------TTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             ccccccc-----------------cc---------------------------ccccchhhhhcccccchheeccccccc
Confidence            7776521                 10                           111223333456678888888887643


Q ss_pred             cccc-------------ccccCCCCcceeeccCccCCCC----CCchhhcCCCCCcEeccccccccc-----CCCCCCCC
Q 046017          213 ERLP-------------ESLGQLALLCELKMIKCSSFES----LPSSLCMLKSLTPLAIIDCKIFKR-----LPNELGNL  270 (443)
Q Consensus       213 ~~~p-------------~~l~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~-----~~~~l~~l  270 (443)
                      ..-.             ......+.|+.+.+++|.+...    +...+...+.|++|++++|.+...     +...+..+
T Consensus       135 ~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~  214 (344)
T d2ca6a1         135 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  214 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             ccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcch
Confidence            2110             1123467899999999876432    333456788999999999987532     34456778


Q ss_pred             CCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCCC-----CChhhhC--CCCCCeeeCCCCCCCc-----cC
Q 046017          271 KCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLKR-----TPESLYQ--LSSLKYLKPFENNSDR-----IP  333 (443)
Q Consensus       271 ~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~~-----lp~~l~~--l~~L~~L~ls~n~l~~-----lp  333 (443)
                      ++|+.|++++|.++     .+...+..+++|++|++++|.++.     +-..+..  .+.|++|++++|+|+.     +.
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~  294 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  294 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHH
Confidence            99999999999986     355667889999999999999983     2233443  4679999999999854     33


Q ss_pred             cccccCCCCCcccccccccccCCCCcccCChhhhhhHH
Q 046017          334 EYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEIV  371 (443)
Q Consensus       334 ~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~~l~  371 (443)
                      ..+..    -.++|++|++++|.+..-+.....+..++
T Consensus       295 ~~l~~----~~~~L~~L~l~~N~~~~~~~~~~~l~~~~  328 (344)
T d2ca6a1         295 TVIDE----KMPDLLFLELNGNRFSEEDDVVDEIREVF  328 (344)
T ss_dssp             HHHHH----HCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred             HHHHc----cCCCCCEEECCCCcCCCcchHHHHHHHHH
Confidence            33321    01579999999998866544454455443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.29  E-value=1.9e-14  Score=123.82  Aligned_cols=116  Identities=22%  Similarity=0.174  Sum_probs=79.6

Q ss_pred             ccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccC
Q 046017          213 ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGY  292 (443)
Q Consensus       213 ~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~  292 (443)
                      ..++..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+ ..++.....+++|++|++++|+++.++. +..
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~  113 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLSG-IEK  113 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEEECSEEECCCHHH-HHH
T ss_pred             hhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccc-cccccccccccccccccccccccccccc-ccc
Confidence            344556667777777777776654 343 467777777777777776 3455444445677778887777777653 566


Q ss_pred             CCCCCEEEccCCCCCCCC--hhhhCCCCCCeeeCCCCCCCcc
Q 046017          293 LSSLAKLELSNNNLKRTP--ESLYQLSSLKYLKPFENNSDRI  332 (443)
Q Consensus       293 l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L~ls~n~l~~l  332 (443)
                      +++|+.|++++|+++.++  ..+..+++|++|++++|.+...
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            777888888888777765  3567777888888887776443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=4.6e-14  Score=121.43  Aligned_cols=131  Identities=22%  Similarity=0.222  Sum_probs=106.1

Q ss_pred             CcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC
Q 046017          188 LESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL  267 (443)
Q Consensus       188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l  267 (443)
                      +..+|.++..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .+|.....+++|++|++++|++.. ++ .+
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~  111 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI  111 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HH
T ss_pred             hhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cc
Confidence            4556677889999999999998765 454 5888999999999998764 567666667889999999998854 33 47


Q ss_pred             CCCCCCceEEecCCCCcccC--hhccCCCCCCEEEccCCCCCCCCh-----------hhhCCCCCCeee
Q 046017          268 GNLKCLAALIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRTPE-----------SLYQLSSLKYLK  323 (443)
Q Consensus       268 ~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~lp~-----------~l~~l~~L~~L~  323 (443)
                      ..+++|++|++++|+++.++  ..+..+++|+.|++++|.+...+.           .+..+|+|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            78899999999999999876  368899999999999998874321           256788888886

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.2e-11  Score=100.02  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=83.7

Q ss_pred             CCCCcEecccccccccCCCCCCCCCCCceEEecCC-CCcccCh-hccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeee
Q 046017          247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT-AIREVPE-SLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLK  323 (443)
Q Consensus       247 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~  323 (443)
                      ...+.++.+++.. ...|..+..+++|++|+++++ .++.++. .|..+++|+.|++++|+|+.++ ..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~-~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGA-LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCC-CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCC-ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3455677777666 345667778888899998766 5887764 5788899999999999999885 5688999999999


Q ss_pred             CCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017          324 PFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN  358 (443)
Q Consensus       324 ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~  358 (443)
                      |++|+|+.+|..+...     .+|++|++++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~-----~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQG-----LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCS-----CCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhcc-----ccccccccCCCccc
Confidence            9999999998877654     46899999999764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.6e-11  Score=96.69  Aligned_cols=104  Identities=22%  Similarity=0.160  Sum_probs=70.3

Q ss_pred             cceeeccCccCCCCCCchhhcCCCCCcEeccccc-ccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEcc
Q 046017          225 LCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCK-IFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELS  302 (443)
Q Consensus       225 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls  302 (443)
                      .+.++.+++... ..|..+..+++|++|++++|+ +...-+..|.++++|+.|++++|+|+.++ ..|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            445555554333 345556666777777776654 43333345777788888888888888774 457778888888888


Q ss_pred             CCCCCCCChhhhCCCCCCeeeCCCCCC
Q 046017          303 NNNLKRTPESLYQLSSLKYLKPFENNS  329 (443)
Q Consensus       303 ~n~l~~lp~~l~~l~~L~~L~ls~n~l  329 (443)
                      +|+++++|.......+|+.|+|++|.+
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCCcccChhhhccccccccccCCCcc
Confidence            888888876555555788888888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.7e-08  Score=80.81  Aligned_cols=61  Identities=21%  Similarity=0.138  Sum_probs=27.1

Q ss_pred             CCCCceEEecCCCCcccC---hhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC
Q 046017          270 LKCLAALIVKGTAIREVP---ESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD  330 (443)
Q Consensus       270 l~~L~~L~l~~n~l~~lp---~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~  330 (443)
                      +++|++|++++|+|+.++   ..+..+++|+.|++++|+++++++ .......|++|++++|.+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            344444444444444322   223344555555555555554442 1122334555555555553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-07  Score=77.78  Aligned_cols=89  Identities=21%  Similarity=0.094  Sum_probs=64.5

Q ss_pred             CCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCC---hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccc
Q 046017          271 KCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP---ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSEL  347 (443)
Q Consensus       271 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp---~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L  347 (443)
                      ..+..+....+....++.....+++|++|++++|+|+.++   ..+..+++|+.|++++|+|+++++.....   . ..|
T Consensus        42 ~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~---~-~~L  117 (162)
T d1koha1          42 NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK---G-LKL  117 (162)
T ss_dssp             TCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT---T-CCC
T ss_pred             cchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhh---c-ccc
Confidence            3344444444444455555567899999999999999764   45778999999999999999988632111   2 469


Q ss_pred             cccccccCCCCcccCC
Q 046017          348 RSLNLSVDSGNSLNLD  363 (443)
Q Consensus       348 ~~L~l~~N~l~~l~~~  363 (443)
                      ++|++++|.+......
T Consensus       118 ~~L~L~~Npl~~~~~~  133 (162)
T d1koha1         118 EELWLDGNSLSDTFRD  133 (162)
T ss_dssp             SSCCCTTSTTSSSSSS
T ss_pred             ceeecCCCCcCcCccc
Confidence            9999999988765443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=5e-06  Score=67.97  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=17.1

Q ss_pred             CCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCC
Q 046017          271 KCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLK  307 (443)
Q Consensus       271 ~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~  307 (443)
                      +.|++|++++|.++     .+-..+...++|++|++++|++.
T Consensus        72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            44455555555444     12233444455555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=4.2e-06  Score=68.44  Aligned_cols=108  Identities=19%  Similarity=0.143  Sum_probs=67.0

Q ss_pred             CCCCcEeccccc-ccc----cCCCCCCCCCCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCCC-----CCh
Q 046017          247 KSLTPLAIIDCK-IFK----RLPNELGNLKCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLKR-----TPE  311 (443)
Q Consensus       247 ~~L~~L~l~~n~-~~~----~~~~~l~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~~-----lp~  311 (443)
                      ++|++|+|++++ +..    .+...+...+.|++|++++|.++     .+...+...+.|++|++++|.+..     +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            455556665432 211    11123445567888888888776     334456667899999999999983     334


Q ss_pred             hhhCCCCCCeeeCCCCCCCccCcc----cccCCCCCcccccccccccC
Q 046017          312 SLYQLSSLKYLKPFENNSDRIPEY----LRSSPTSIPSELRSLNLSVD  355 (443)
Q Consensus       312 ~l~~l~~L~~L~ls~n~l~~lp~~----~~~~~~~lp~~L~~L~l~~N  355 (443)
                      .+...++|++|++++|++..+...    +..... --++|++|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~-~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHH-hCCCccEeeCcCC
Confidence            677788999999999877655422    111100 0156777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.18  E-value=0.00013  Score=59.03  Aligned_cols=108  Identities=21%  Similarity=0.255  Sum_probs=59.5

Q ss_pred             CCCcceEEecCCCCCC-----cCCccccCCCCCcEEecccccccc----ccccccCCCCcccEEEeecCchh-----hhh
Q 046017           18 RPCSCGLRLKNCSSLE-----SFPSSLCVLKSLRSLQIIDCKKFE----RLLDELGNLETLLVLRVEGAAIR-----ELS   83 (443)
Q Consensus        18 ~~~L~~L~ls~~~~~~-----~~p~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~-----~lp   83 (443)
                      .+.|++|+++++..++     .+-.++...++|++|++++|.+..    .+...+...+.++.++++++.++     .+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            4677777777643222     122345566777777777776543    23334455667777777776653     333


Q ss_pred             hhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc-----ccCccccCCCCCCEEeccCC
Q 046017           84 QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR-----ELPESIGKSTLLSELELKNC  137 (443)
Q Consensus        84 ~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~-----~lp~~l~~l~~L~~L~l~~n  137 (443)
                      ..+...++|+.++|+.            ++|.++     .+...+...+.|++|+++.+
T Consensus        96 ~~l~~~~~L~~l~L~l------------~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          96 EALQSNTSLIELRIDN------------QSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HGGGGCSSCCEEECCC------------CSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhCccccEEeecc------------CCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            4555555555555532            223332     24444555666777766554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.16  E-value=5.1e-05  Score=61.63  Aligned_cols=16  Identities=13%  Similarity=-0.091  Sum_probs=7.5

Q ss_pred             hhhCCCCCCeeeCCCC
Q 046017          312 SLYQLSSLKYLKPFEN  327 (443)
Q Consensus       312 ~l~~l~~L~~L~ls~n  327 (443)
                      .+...++|++|+++.+
T Consensus       127 ~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         127 MLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHCSSCCEEECCCS
T ss_pred             HHHhCCCcCEEeCcCC
Confidence            3444455555555443