Citrus Sinensis ID: 046018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRFRN
Secondary Structure (PSIPRED)
ccEEEEEccEEEEEEcccccEEEEEEEcccccccccccccccccccccccEEEEEcccccEEEEEccccEEEEEccccEEEEEEEEEccEEccccccEEEEccccEEEEEccccccccccccccccccccccEEEEEEccccEEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEccccccccEEEEEcccccccEEEcccccEEEEEccccccccccEEcccHHHcEEEcccccccEEEEEEEcccccEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEcccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccccccEEEEEEccccccccccccccccccccccccEEEccccccEEEEEccccEEEEcccccEEEEEEEccccccEEEccccEEcccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccHHHEEEEEEcccccccEEEEEccccccccccccccccEEEEEEcccccHHHHHcccHHHHHHHHHccccHHHHHHHcccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEcccccEEEEEcccc
Coil and Loop (DISEMBL)
gpytgvadgrilkwqgdelgwtEFAVTTSQrkecvrpfapdiehicgrplgirfdkktgdlYIADAYLgfqvvgpegglaTQLVTEaagqplrftndldidehkgviyftdsstsfqRRQFMSSIlsgdktgrlLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRfwlhgpnsgkqdvfaelpgfpdnvrsnsnGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEekdgqlwmgsvlmPFIGIYNRFRN
Flexible Loop (DISEMBL)
gpytgvadgrilkwqgdelgwTEFAVTTSQRKECVRpfapdiehicgrplGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFtdsstsfqrRQFMSsilsgdktgrLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVeekdgqlwmgsvlMPFIGIYNRFRN
Low Complexity Region (SEG)
GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRFRN
Disordered region (IsUnstruct)
*****VADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRF**
Disordered Region (DISOPRED)
GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRF**
Disordered Region (DISEMBL)
GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRFRN
Disordered Region (DISPRO)
*PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRF**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRFRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.929	0.692	0.391	6e-49
P94111	335	Strictosidine synthase 1	no	no	0.870	0.805	0.372	6e-49
Q803F5	415	Adipocyte plasma membrane	yes	no	0.929	0.693	0.386	3e-48
P92976	329	Strictosidine synthase 3	no	no	0.870	0.820	0.362	1e-47
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.941	0.703	0.387	7e-47
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.925	0.689	0.368	3e-45
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.922	0.760	0.367	3e-45
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.929	0.699	0.379	6e-45
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.922	0.689	0.358	4e-44
P68175	344	Strictosidine synthase OS	N/A	no	0.887	0.799	0.323	5e-43

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  194 bits (494), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/309 (39%), Positives = 172/309 (55%), Gaps = 21/309 (6%)

Query: 3   YTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLY 62
           YTG ADG+I+K +G  +  T  A       +  R   P     CGRPLGIR     G L+
Sbjct: 112 YTGTADGKIVKIEGKSI--TVIARLGKPPCDGSREQEPS----CGRPLGIRVGP-NGTLF 164

Query: 63  IADAYLGFQVVGPEGGLATQLVTE---AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119
           +ADAYLG   V P  G  T LV+      G+ L F NDLD+ +    +YFTDSS+ +QRR
Sbjct: 165 VADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRR 224

Query: 120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRF 179
            ++  I+     GR+L+Y+  TKEVT+L++ L FANG+ L  D   +L+AET+  RI R 
Sbjct: 225 DYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRV 284

Query: 180 WLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGKT 234
            + G N G  D F + LPGFPDN+R +S+G +WVA+ A +    F  L  L+   W+ K 
Sbjct: 285 HVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKL 344

Query: 235 LLKLPLSFRQLHSLLVGGKP-HATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLW 293
           + KL   F Q   +L+   P ++  I+L E G  +    D  G   +++SE  E DG L+
Sbjct: 345 IFKL---FSQ--DVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLY 399

Query: 294 MGSVLMPFI 302
           +GS   P++
Sbjct: 400 LGSFRSPYL 408

Salmo salar (taxid: 8030)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score =  194 bits (493), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 172/309 (55%), Gaps = 39/309 (12%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTT--SQRKECVRPFAPDIEHICGRPLGIRFDKKT 58
           G YTGV+ G+ILK+   E G+ +FA  T  S    C       +   CGRP GI F++KT
Sbjct: 50  GFYTGVSGGKILKYL-PETGYVDFAQITESSNSSWCDGTIGTALAGRCGRPAGIAFNEKT 108

Query: 59  GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
           GDLY+ADA LG  V+ P GGLAT++     G+P +F + LD+D   GV+YFT  S+ F  
Sbjct: 109 GDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSP 168

Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
            Q + ++   D TG+L KY+ +TK VT+L++GL+ + G A+S D +F+L+++ +   I R
Sbjct: 169 IQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKR 228

Query: 179 FWLHGPNSGKQDVFAELPGFPDNV-RSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK 237
           +W+ GP +G  + F      PDN+ R  S G FWVA                        
Sbjct: 229 YWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWVA------------------------ 264

Query: 238 LPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEV--LEDCEGKTLSFISEVEEKDGQLWMG 295
                  ++ ++V   P  +A+K++  GEVL+   L+D  G TL  +SEV E +G L++G
Sbjct: 265 -----SVVNKIIVPTNP--SAVKVNSNGEVLQTIPLKDKFGDTL--LSEVNEFEGNLYIG 315

Query: 296 SVLMPFIGI 304
           ++  PF GI
Sbjct: 316 TLTGPFAGI 324

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 170/308 (55%), Gaps = 20/308 (6%)

Query: 3   YTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLY 62
           YTG ADG+I+K +G  +      + T  +  C    + + EH CGRPLGIR     G L+
Sbjct: 112 YTGTADGKIVKIEGRNI----HVLATIGKPPCG---SREHEHTCGRPLGIRVGPN-GTLF 163

Query: 63  IADAYLGFQVVGPEGGLATQLVT---EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119
           +ADAYLG   V P  G    LV+     AG+ L F NDLD+ +    +YFTDSS+ +QRR
Sbjct: 164 VADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRR 223

Query: 120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRF 179
            FM  I+     GR+L+Y+  TKEV ++++ L F NG+ L  D   +L+AET+  RI R 
Sbjct: 224 DFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRV 283

Query: 180 WLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGKT 234
            + G N G  D F E LPGFPDN+R +S+G +WVA+ A +    F  L  L+   WL K 
Sbjct: 284 HVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKL 343

Query: 235 LLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWM 294
           + KL   F Q  +LL     ++  ++L   G  +    D +G   ++ SE  E  G L++
Sbjct: 344 IFKL---FSQ-DTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYL 399

Query: 295 GSVLMPFI 302
           GS   P++
Sbjct: 400 GSFRSPYL 407

Danio rerio (taxid: 7955)

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 169/309 (54%), Gaps = 39/309 (12%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHI--CGRPLGIRFDKKT 58
           G YTGV  G+ILK+   + G+ +FA  T+  K  +   A    ++  CGRP GI F+ KT
Sbjct: 52  GFYTGVTGGKILKYL-PKKGYVDFAQITNSSKSSLCDGALGTTNVEKCGRPAGIAFNTKT 110

Query: 59  GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
           GDLY+ADA LG  V+   GGLA ++     G+P  F + LD+D   GV+YFT  S++F  
Sbjct: 111 GDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGP 170

Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R  + ++ + D TG+  KY+ + K VT+L++GL+ + G A+S D +F+L+ + +   I R
Sbjct: 171 RDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKR 230

Query: 179 FWLHGPNSGKQDVFAELPGFPDNV-RSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK 237
           +W+ G  +G  + F      PDN+ R  S G FWVA            ++NS  G T   
Sbjct: 231 YWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVAS-----------VVNSATGPT--- 276

Query: 238 LPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEV--LEDCEGKTLSFISEVEEKDGQLWMG 295
                            + +A+K+S  G+VL+   L+D  G TL  +SEV E  GQL++G
Sbjct: 277 -----------------NPSAVKVSSAGKVLQTIPLKDKFGDTL--VSEVNEYKGQLYIG 317

Query: 296 SVLMPFIGI 304
           ++  PF GI
Sbjct: 318 ALFGPFAGI 326

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/312 (38%), Positives = 167/312 (53%), Gaps = 20/312 (6%)

Query: 3   YTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLY 62
           +TG ADG+ILK +  E       V T  R        P+ E  CGRPLGIR       L+
Sbjct: 112 FTGTADGKILKIEDGE-------VQTVARIGHGPCGTPEDEPTCGRPLGIRVGPNN-TLF 163

Query: 63  IADAYLGFQVVGPEGGLATQLVTEAA---GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119
           +ADAY G   V P  G    LV+      GQ L F NDL + +    IYFTDSS+ +QRR
Sbjct: 164 VADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRR 223

Query: 120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRF 179
            F+  ++ G   GRLL+Y+  TKEV +L+ GL F NGV LS    F+L+ ET+  RI R+
Sbjct: 224 DFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRY 283

Query: 180 WLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGKT 234
           ++ G   G  D+F E +PG PDN+R +S+G +WVA+   +    F  L  L+   W+ + 
Sbjct: 284 YVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRM 343

Query: 235 LLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWM 294
           + KL LS   +  LL      +  ++LSE G       D  G T+ ++SE  E +G L++
Sbjct: 344 IFKL-LSQETVTKLL---PKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYL 399

Query: 295 GSVLMPFIGIYN 306
           GS   PFI   N
Sbjct: 400 GSFRSPFICRLN 411

Gallus gallus (taxid: 9031)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 169/309 (54%), Gaps = 22/309 (7%)

Query: 3   YTGVADGRILKWQGDEL-GWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDL 61
           +TG ADGR++K +  E+     F     + +        D E +CGRPLGIR     G L
Sbjct: 113 FTGTADGRVVKLENGEIETIARFGSGPCKTR--------DDEPVCGRPLGIR-AGPNGTL 163

Query: 62  YIADAYLGFQVVGP---EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
           ++ADAY G   V P   E  L     T   G+ + F NDL + +    IYFTDSS+ +QR
Sbjct: 164 FVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQR 223

Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R ++  ++ G   GRLL+Y+  T+EV +LL  L F NGV LS    F+L+AET+  RI R
Sbjct: 224 RDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRR 283

Query: 179 FWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGK 233
            ++ G   G  D+F E +PGFPDN+R +S+G +WV +   +    F  L  L+   W+ +
Sbjct: 284 VYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKR 343

Query: 234 TLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLW 293
            + KL   F Q  +++     ++  ++LS+ G     L D +G   ++ISEV E DG L+
Sbjct: 344 MIFKL---FSQ-ETVMKFVPRYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLY 399

Query: 294 MGSVLMPFI 302
           +GS   PF+
Sbjct: 400 LGSFRSPFL 408

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/310 (36%), Positives = 171/310 (55%), Gaps = 24/310 (7%)

Query: 3   YTGVADGRILKWQGDEL-GWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDL 61
           +TG ADGR++K +  E+     F     + +        D E  CGRPLGIR     G L
Sbjct: 73  FTGTADGRVVKLENGEIETIARFGSGPCKTR--------DDEPTCGRPLGIRVGP-NGTL 123

Query: 62  YIADAYLGFQVVGPEGGLATQLV---TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
           ++ DAY G   V P+      L+   T   G+ + F NDL I      IYFTDSS+ +QR
Sbjct: 124 FVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQR 183

Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R ++  ++ G   GRLL+Y+  TKEV +LL  L F NGV LS +  F+L+AET+  RI R
Sbjct: 184 RDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRR 243

Query: 179 FWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVA---LHAKKGLFGKLILLNS--WLG 232
            ++ G   G  D+F E +PGFPDN+R +S+G +WVA   + A  G F  L  L+   ++ 
Sbjct: 244 VYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPG-FSMLDFLSDKPFIK 302

Query: 233 KTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQL 292
           + + KL   F Q  +++     ++  +++S+ G     L D +G+ ++++SE  E DG L
Sbjct: 303 RMIFKL---FSQ-ETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYL 358

Query: 293 WMGSVLMPFI 302
           ++GS   PFI
Sbjct: 359 YLGSFRSPFI 368

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/308 (37%), Positives = 168/308 (54%), Gaps = 20/308 (6%)

Query: 3   YTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLY 62
           +TG ADGR++K +  E       V T  R         D E  CGRPLGIR     G L+
Sbjct: 112 FTGTADGRVVKLENGE-------VETIARFGSGPCKTRDDEPACGRPLGIR-AGPNGTLF 163

Query: 63  IADAYLGFQVVGP---EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119
           + DAY G   V P   E  L     T   G+ + F NDL +      IYFTDSS+ +QRR
Sbjct: 164 VVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRR 223

Query: 120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRF 179
            ++  ++ G   GRLL+Y+  TKEV +LL  L F NGV LS    F+L+ E +  RI RF
Sbjct: 224 DYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRF 283

Query: 180 WLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGL--FGKLILLNS--WLGKT 234
           ++ G   G  DVF E LPGFPDN+R++S+G +WV++ A +    F  L  L+   +L K 
Sbjct: 284 YVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKV 343

Query: 235 LLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWM 294
           + KL   F Q  +++     ++  ++LS+ G  L  L D EG+ ++++SE  E  G L++
Sbjct: 344 IFKL---FSQ-ETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYL 399

Query: 295 GSVLMPFI 302
           GS   P++
Sbjct: 400 GSFRAPYL 407

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  178 bits (452), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 170/310 (54%), Gaps = 24/310 (7%)

Query: 3   YTGVADGRILKWQGDEL-GWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDL 61
           +TG ADGR++K +  E+     F     + +        D E  CGRPLGIR     G L
Sbjct: 112 FTGTADGRVVKLENGEIETIARFGSGPCKTR--------DDEPTCGRPLGIR-AGPNGTL 162

Query: 62  YIADAYLGFQVVGPEGGLATQLV---TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
           ++ DAY G   V P+      L+   T   G+ + F NDL +      IYFTDSS+ +QR
Sbjct: 163 FVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQR 222

Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R ++  ++     GRLL+Y+  TKEV +LL  L F NGV LS +  F+L+AET+  RI R
Sbjct: 223 RDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRR 282

Query: 179 FWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVA---LHAKKGLFGKLILLNS--WLG 232
            ++ G   G  D+F E +PGFPDN+R +S+G +WVA   + A  G F  L  L+   ++ 
Sbjct: 283 VYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPG-FSMLDFLSDKPFIK 341

Query: 233 KTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQL 292
           + + K+   F Q  +++     ++  +++S+ G     L D +G+ ++++SE  E DG L
Sbjct: 342 RMIFKM---FSQ-ETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYL 397

Query: 293 WMGSVLMPFI 302
           ++GS   PFI
Sbjct: 398 YLGSFRSPFI 407

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score =  175 bits (443), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 31/306 (10%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKT 58
           G YT V DGR++K++G   G+ +FA  +    +     + D E   +CGR   I ++ + 
Sbjct: 54  GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 113

Query: 59  GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
             LYI D Y    VVG EGG ATQL T   G P ++   + +D+  G++YFTD ST +  
Sbjct: 114 NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 173

Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R     + + DKTGRL+KY+ +TKE T+LL+ L    G  +S D +F+L+AE  + +I++
Sbjct: 174 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVK 233

Query: 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238
           +WL GP  G  +V  ++P  P N++ N++G FWV+  + + L G +              
Sbjct: 234 YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS--SSEELDGNM-------------- 276

Query: 239 PLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVL 298
                        G+     IK  E G +LEV+            +++E DG L++G++ 
Sbjct: 277 ------------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF 324

Query: 299 MPFIGI 304
              +GI
Sbjct: 325 HGSVGI 330

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
255583680	372	strictosidine synthase, putative [Ricinu	0.987	0.822	0.784	1e-145
224139742	375	predicted protein [Populus trichocarpa]	0.987	0.816	0.763	1e-141
225441250	370	PREDICTED: strictosidine synthase 1 [Vit	0.983	0.824	0.732	1e-135
297820490	374	strictosidine synthase family protein [A	0.987	0.818	0.702	1e-133
6911873	372	putative protein [Arabidopsis thaliana]	0.987	0.822	0.705	1e-132
30694556	374	strictosidine synthase family protein [A	0.987	0.818	0.705	1e-132
110743953	374	hypothetical protein [Arabidopsis thalia	0.987	0.818	0.702	1e-131
356571961	371	PREDICTED: strictosidine synthase 1-like	0.983	0.822	0.724	1e-131
356504726	371	PREDICTED: strictosidine synthase 1-like	0.983	0.822	0.714	1e-130
449437729	376	PREDICTED: strictosidine synthase 1-like	0.983	0.811	0.737	1e-129

>gi|255583680|ref|XP_002532594.1| strictosidine synthase, putative [Ricinus communis] gi|223527682|gb|EEF29791.1| strictosidine synthase, putative [Ricinus communis]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 240/306 (78%), Positives = 275/306 (89%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPYTGVADGRILKWQGD LGWT+FA TTS RKEC+RPFAP++EH+CGRPLG+RFDKKTGD
Sbjct: 66  GPYTGVADGRILKWQGDSLGWTDFAFTTSNRKECIRPFAPELEHVCGRPLGLRFDKKTGD 125

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAYLG QVVGP GGLAT +V+E  G PLRFTND+DIDE   VIYFTD+S  FQRRQ
Sbjct: 126 LYIADAYLGLQVVGPNGGLATPVVSEVEGHPLRFTNDMDIDEQNDVIYFTDTSKIFQRRQ 185

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           FM+SIL  DKTGRLLKY+K++KEVTILL+GL+FANGVALS+DR+F+L+AETS C+I RFW
Sbjct: 186 FMASILHKDKTGRLLKYDKSSKEVTILLEGLSFANGVALSKDRSFVLVAETSTCQISRFW 245

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           LHGPN+GK DVFA+LPGFPDN+R NS GEFWVALHAK+G   KL L NSW+GKTLLK PL
Sbjct: 246 LHGPNAGKVDVFAKLPGFPDNIRRNSKGEFWVALHAKEGFLAKLALSNSWIGKTLLKFPL 305

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
           SF+QLHSLLVGGKPHATAIKLS  G++++VLEDC+GK L FISEVEEKDG+LW+GSVLMP
Sbjct: 306 SFKQLHSLLVGGKPHATAIKLSGDGKIVQVLEDCDGKRLRFISEVEEKDGKLWIGSVLMP 365

Query: 301 FIGIYN 306
           F+GIYN
Sbjct: 366 FLGIYN 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139742|ref|XP_002323255.1| predicted protein [Populus trichocarpa] gi|222867885|gb|EEF05016.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/309 (76%), Positives = 275/309 (88%), Gaps = 3/309 (0%)

Query: 1   GPYTGVADGRILKWQGDELG---WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKK 57
           GPYTGVADGR+LKW   + G   WT+FA T+S R ECVRPFAP++EH+CGRPLG+RFDKK
Sbjct: 66  GPYTGVADGRVLKWIAGDDGSGSWTDFATTSSNRNECVRPFAPEMEHVCGRPLGLRFDKK 125

Query: 58  TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ 117
           TG+LYIADAYLG QVVGP GGLAT +VTE  GQP+RFTNDLDIDE + VIYFTD+S  FQ
Sbjct: 126 TGNLYIADAYLGLQVVGPTGGLATPVVTELEGQPMRFTNDLDIDEQEDVIYFTDTSMVFQ 185

Query: 118 RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRIL 177
           RRQF+ S+L+ DKTGRLLKY+K++KEVT+L +GLAFANGVALS+D TF+L+AET+ CRIL
Sbjct: 186 RRQFILSLLTKDKTGRLLKYDKSSKEVTVLARGLAFANGVALSKDSTFLLVAETTTCRIL 245

Query: 178 RFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK 237
           RFWLHGPN+GK DVF ELPGFPDN+R NS GEFWVALH+KKGLF K++L NSW+GKTLLK
Sbjct: 246 RFWLHGPNAGKSDVFTELPGFPDNIRRNSKGEFWVALHSKKGLFAKVVLSNSWIGKTLLK 305

Query: 238 LPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSV 297
            PLSF+QLHSLLVGGK HATAIKLSE+G+VL+VLEDC+GKTL FISEVEEKDG+LW+GSV
Sbjct: 306 FPLSFKQLHSLLVGGKAHATAIKLSEEGKVLDVLEDCDGKTLRFISEVEEKDGKLWIGSV 365

Query: 298 LMPFIGIYN 306
           LMPF+G YN
Sbjct: 366 LMPFLGTYN 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441250|ref|XP_002273764.1| PREDICTED: strictosidine synthase 1 [Vitis vinifera]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/306 (73%), Positives = 271/306 (88%), Gaps = 1/306 (0%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPYTGVADGR+LKW+GD  GWT+FAVTTS+RKECVRPFAP++EHICGRPLG+RFDKKTGD
Sbjct: 64  GPYTGVADGRVLKWEGDGRGWTDFAVTTSERKECVRPFAPEMEHICGRPLGLRFDKKTGD 123

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAY G QVV P GGLAT LVTE  G+ L FTND+DIDE + VIYFTD+ST F RRQ
Sbjct: 124 LYIADAYFGLQVVEPNGGLATPLVTEVEGRRLLFTNDMDIDEVEDVIYFTDTSTDFHRRQ 183

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           FM+++LSGD TGRL+KY+K++KEVT+LL+GLAFANGVA+S+DR+F+L+AET+  +I+R+W
Sbjct: 184 FMAALLSGDNTGRLMKYDKSSKEVTVLLRGLAFANGVAMSKDRSFVLVAETTTGKIIRYW 243

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           L GPN+GK DVFAE+PG+PDNVR NS GEFWVALHAKKG     I  NSW+GKTLLKLPL
Sbjct: 244 LKGPNAGKSDVFAEVPGYPDNVRRNSKGEFWVALHAKKGPHANWITSNSWVGKTLLKLPL 303

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
           +F+QLH L+V  + HATAIKLSE+G+VLEVLEDCEGK++ FISEVEE +G+LW+GSV+MP
Sbjct: 304 TFKQLHKLIV-VEAHATAIKLSEEGQVLEVLEDCEGKSMRFISEVEEHNGKLWLGSVMMP 362

Query: 301 FIGIYN 306
           FIG+Y+
Sbjct: 363 FIGVYD 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820490|ref|XP_002878128.1| strictosidine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323966|gb|EFH54387.1| strictosidine synthase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 215/306 (70%), Positives = 264/306 (86%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPY GV+DGR+LKW+ + LGW++FA T+S R+ECVRPFAP++EH+CGRPLG+RFDKKTGD
Sbjct: 68  GPYVGVSDGRVLKWRSESLGWSDFAYTSSNRQECVRPFAPELEHVCGRPLGLRFDKKTGD 127

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAY G  VVGP GGLA  LVTEA GQP RFTNDLDIDE + VIYFTD+S  FQRRQ
Sbjct: 128 LYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFTNDLDIDEQEDVIYFTDTSARFQRRQ 187

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           F++++L+ DKTGR +KY++++K+ T+LLQGLAFANGVALS+DR+F+L+ ET+ C+ILR W
Sbjct: 188 FLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFANGVALSKDRSFVLVVETTTCKILRLW 247

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           L GPN+G  +VFAELPGFPDN+R NSNGEFWVALH+KKGLF KL L  +W    +L+LP+
Sbjct: 248 LSGPNAGTHEVFAELPGFPDNIRRNSNGEFWVALHSKKGLFAKLSLSQTWFRDLVLRLPI 307

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
           S ++LHSL  GG+PHATAIKLSE G+VLEVLED EGK L FISEVEEKDG+LW+GSVLMP
Sbjct: 308 SPQRLHSLFTGGRPHATAIKLSESGKVLEVLEDNEGKRLRFISEVEEKDGKLWIGSVLMP 367

Query: 301 FIGIYN 306
           F+G+Y+
Sbjct: 368 FLGVYD 373

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6911873|emb|CAB72173.1| putative protein [Arabidopsis thaliana]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 263/306 (85%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPY GV+DGRILKW+G+ LGW++FA T+S R+EC RPFAP++EH+CGRPLG+RFDKKTGD
Sbjct: 66  GPYVGVSDGRILKWRGEPLGWSDFAHTSSNRQECARPFAPELEHVCGRPLGLRFDKKTGD 125

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAY G  VVGP GGLA  LVTEA GQP RFTNDLDIDE + VIYFTD+S  FQRRQ
Sbjct: 126 LYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFTNDLDIDEQEDVIYFTDTSARFQRRQ 185

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           F++++L+ DKTGR +KY++++K+ T+LLQGLAFANGVALS+DR+F+L+ ET+ C+ILR W
Sbjct: 186 FLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFANGVALSKDRSFVLVVETTTCKILRLW 245

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           L GPN+G   VFAELPGFPDN+R NSNGEFWVALH+KKGLF KL L  +W    +L+LP+
Sbjct: 246 LSGPNAGTHQVFAELPGFPDNIRRNSNGEFWVALHSKKGLFAKLSLTQTWFRDLVLRLPI 305

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
           S ++LHSL  GG PHATAIKLSE G+VLEVLED EGKTL FISEVEEKDG+LW+GSVL+P
Sbjct: 306 SPQRLHSLFTGGIPHATAIKLSESGKVLEVLEDKEGKTLRFISEVEEKDGKLWIGSVLVP 365

Query: 301 FIGIYN 306
           F+G+Y+
Sbjct: 366 FLGVYD 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694556|ref|NP_191262.2| strictosidine synthase family protein [Arabidopsis thaliana] gi|66792612|gb|AAY56408.1| At3g57030 [Arabidopsis thaliana] gi|111074396|gb|ABH04571.1| At3g57030 [Arabidopsis thaliana] gi|332646080|gb|AEE79601.1| strictosidine synthase family protein [Arabidopsis thaliana]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 216/306 (70%), Positives = 263/306 (85%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPY GV+DGRILKW+G+ LGW++FA T+S R+EC RPFAP++EH+CGRPLG+RFDKKTGD
Sbjct: 68  GPYVGVSDGRILKWRGEPLGWSDFAHTSSNRQECARPFAPELEHVCGRPLGLRFDKKTGD 127

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAY G  VVGP GGLA  LVTEA GQP RFTNDLDIDE + VIYFTD+S  FQRRQ
Sbjct: 128 LYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFTNDLDIDEQEDVIYFTDTSARFQRRQ 187

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           F++++L+ DKTGR +KY++++K+ T+LLQGLAFANGVALS+DR+F+L+ ET+ C+ILR W
Sbjct: 188 FLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFANGVALSKDRSFVLVVETTTCKILRLW 247

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           L GPN+G   VFAELPGFPDN+R NSNGEFWVALH+KKGLF KL L  +W    +L+LP+
Sbjct: 248 LSGPNAGTHQVFAELPGFPDNIRRNSNGEFWVALHSKKGLFAKLSLTQTWFRDLVLRLPI 307

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
           S ++LHSL  GG PHATAIKLSE G+VLEVLED EGKTL FISEVEEKDG+LW+GSVL+P
Sbjct: 308 SPQRLHSLFTGGIPHATAIKLSESGKVLEVLEDKEGKTLRFISEVEEKDGKLWIGSVLVP 367

Query: 301 FIGIYN 306
           F+G+Y+
Sbjct: 368 FLGVYD 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743953|dbj|BAE99809.1| hypothetical protein [Arabidopsis thaliana]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 215/306 (70%), Positives = 262/306 (85%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPY GV+DGRILKW+G+ LGW++FA T+S R+EC RPFAP++EH+CGRPLG+RFDKKTGD
Sbjct: 68  GPYVGVSDGRILKWRGEPLGWSDFAHTSSNRQECARPFAPELEHVCGRPLGLRFDKKTGD 127

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAY G  VVGP GGLA  LVTEA GQP RFTNDLDIDE + VIYFTD+S  FQRRQ
Sbjct: 128 LYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFTNDLDIDEQEDVIYFTDTSARFQRRQ 187

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           F++++L+ DKTGR +KY++++K+ T+LLQGLAFANGVALS+DR+F+L+ ET+ C+ILR W
Sbjct: 188 FLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFANGVALSKDRSFVLVVETTTCKILRLW 247

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           L GPN+G   VFAELPGFPDN+R NSNGEFWVALH+KKGLF KL L  +W    +L+LP+
Sbjct: 248 LSGPNAGTHQVFAELPGFPDNIRRNSNGEFWVALHSKKGLFAKLSLTQTWFRDLVLRLPI 307

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
           S ++LHSL  GG PHATAIKLSE G+VLEVL D EGKTL FISEVEEKDG+LW+GSVL+P
Sbjct: 308 SPQRLHSLFTGGIPHATAIKLSESGKVLEVLGDKEGKTLRFISEVEEKDGKLWIGSVLVP 367

Query: 301 FIGIYN 306
           F+G+Y+
Sbjct: 368 FLGVYD 373

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571961|ref|XP_003554139.1| PREDICTED: strictosidine synthase 1-like [Glycine max]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/305 (72%), Positives = 257/305 (84%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPYTGVADGRILKW+G+E GWTEFAVT+S R +CVRPFAP++EHICGRPLG+RFDKK GD
Sbjct: 65  GPYTGVADGRILKWEGEERGWTEFAVTSSNRSDCVRPFAPELEHICGRPLGLRFDKKNGD 124

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAYLG +VVG  GGLAT++VTE  GQPL+FTND+DI E + VIYFTDS+T FQRRQ
Sbjct: 125 LYIADAYLGLKVVGSAGGLATEVVTEVEGQPLQFTNDMDISEDEEVIYFTDSTTIFQRRQ 184

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           FM  +LSGDKTGRL+KY K+TKEVT+LL+GLAF NGVALS+D +F+L+AET+ CRIL+ W
Sbjct: 185 FMLVLLSGDKTGRLMKYNKSTKEVTVLLRGLAFPNGVALSKDGSFVLVAETTTCRILQLW 244

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           L GP +G  D FA LPGFPDNVR NS G FWVALHAK   F K +  N W GK LLK+  
Sbjct: 245 LRGPKAGHVDTFAVLPGFPDNVRRNSQGHFWVALHAKGSRFAKWVSSNPWAGKALLKIGF 304

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
           +F+QLHS   G KPHA A+KLS+KGE+LEVLEDC+GKTL FISEVEEKDG+LW+ SVLMP
Sbjct: 305 NFKQLHSSFAGWKPHAAAVKLSDKGEILEVLEDCDGKTLKFISEVEEKDGKLWIASVLMP 364

Query: 301 FIGIY 305
           FIGIY
Sbjct: 365 FIGIY 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504726|ref|XP_003521146.1| PREDICTED: strictosidine synthase 1-like [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 218/305 (71%), Positives = 258/305 (84%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPYTGVADGRILKW+G+E GWTEFAVT+S R +CVRPFAP++EHICGRPLG+RFDKK+GD
Sbjct: 65  GPYTGVADGRILKWEGEERGWTEFAVTSSNRSDCVRPFAPELEHICGRPLGLRFDKKSGD 124

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAYLG +VVG  GGLAT++VTE  GQPL+FTND+DI E   VIYFTDS+T FQRRQ
Sbjct: 125 LYIADAYLGLKVVGSTGGLATEVVTEVEGQPLQFTNDMDISEDADVIYFTDSTTIFQRRQ 184

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           FM  +L GDKTGRL+KY K+TKEVTILL+ LAF NGVALS+D +F+L+AET+ CRIL+ W
Sbjct: 185 FMLVLLGGDKTGRLMKYHKSTKEVTILLRDLAFPNGVALSKDGSFVLVAETATCRILQLW 244

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           L GP +G+ D FA LPGFPDN+R NS G FWVALHAK+  F K +  N W+GK LLK+  
Sbjct: 245 LGGPKAGQVDTFAVLPGFPDNIRRNSEGHFWVALHAKRSPFAKWVSSNPWVGKALLKIGF 304

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
           +F+QLH+   G KPHA A+KLS+KGE+LEVLEDC+GKTL FISEVEEKDG+LW+ SVLMP
Sbjct: 305 NFKQLHTSFAGWKPHAAAVKLSDKGEILEVLEDCDGKTLKFISEVEEKDGKLWIASVLMP 364

Query: 301 FIGIY 305
           FIGIY
Sbjct: 365 FIGIY 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437729|ref|XP_004136643.1| PREDICTED: strictosidine synthase 1-like [Cucumis sativus]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/305 (73%), Positives = 262/305 (85%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
           GPYTGVADGRILKWQGD  GWT+FAVT+SQR ECVRPFAP++EH+CGRPLG+RFDK TGD
Sbjct: 71  GPYTGVADGRILKWQGDGRGWTDFAVTSSQRSECVRPFAPELEHVCGRPLGLRFDKTTGD 130

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           LYIADAYLG  VVGP GGLAT+LV+E  G+PLRFTNDLDIDE   +IYFTDSST FQRRQ
Sbjct: 131 LYIADAYLGLHVVGPSGGLATKLVSEFEGKPLRFTNDLDIDEDNDIIYFTDSSTVFQRRQ 190

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
           FM+SILSGD TGRL KY + +K+VT+LLQGLAFANG+ALS+D +++L+ E+++ RILRFW
Sbjct: 191 FMASILSGDSTGRLFKYHRASKQVTVLLQGLAFANGIALSKDHSYVLVVESTSGRILRFW 250

Query: 181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
           L G  +G  DV A LPGFPDN+R N  GE+WVALH+KKG+ G L+   SW GK LLKLP+
Sbjct: 251 LQGTEAGNFDVLARLPGFPDNIRRNPKGEYWVALHSKKGIIGNLVTSTSWFGKLLLKLPI 310

Query: 241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
            F++LH LLVGGK HATAI+LSE+GEVLEVLEDCEG TL FISEVEEKDG+LW GSVLMP
Sbjct: 311 DFKRLHGLLVGGKAHATAIRLSEEGEVLEVLEDCEGNTLKFISEVEEKDGKLWFGSVLMP 370

Query: 301 FIGIY 305
           FIG+Y
Sbjct: 371 FIGVY 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2080575	374	AT3G57030 [Arabidopsis thalian	0.987	0.818	0.705	1.2e-122
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.977	0.776	0.559	1.1e-87
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.977	0.767	0.540	7.7e-87
TAIR|locus:2040297	394	SSL1 "strictosidine synthase-l	0.977	0.769	0.496	2.4e-83
TAIR|locus:2040312	376	SSL2 "strictosidine synthase-l	0.977	0.805	0.519	4.5e-82
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.977	0.818	0.472	2.2e-80
TAIR|locus:2080660	376	AT3G57010 [Arabidopsis thalian	0.967	0.797	0.470	1.9e-76
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.893	0.687	0.466	8.9e-70
TAIR|locus:2031486	335	SS2 "strictosidine synthase 2"	0.767	0.710	0.398	6.8e-51
TAIR|locus:2031511	329	SS3 "strictosidine synthase 3"	0.770	0.726	0.375	5.3e-49

TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
 Identities = 216/306 (70%), Positives = 263/306 (85%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
             GPY GV+DGRILKW+G+ LGW++FA T+S R+EC RPFAP++EH+CGRPLG+RFDKKTGD
Sbjct:    68 GPYVGVSDGRILKWRGEPLGWSDFAHTSSNRQECARPFAPELEHVCGRPLGLRFDKKTGD 127

Query:    61 LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
             LYIADAY G  VVGP GGLA  LVTEA GQP RFTNDLDIDE + VIYFTD+S  FQRRQ
Sbjct:   128 LYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFTNDLDIDEQEDVIYFTDTSARFQRRQ 187

Query:   121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
             F++++L+ DKTGR +KY++++K+ T+LLQGLAFANGVALS+DR+F+L+ ET+ C+ILR W
Sbjct:   188 FLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFANGVALSKDRSFVLVVETTTCKILRLW 247

Query:   181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
             L GPN+G   VFAELPGFPDN+R NSNGEFWVALH+KKGLF KL L  +W    +L+LP+
Sbjct:   248 LSGPNAGTHQVFAELPGFPDNIRRNSNGEFWVALHSKKGLFAKLSLTQTWFRDLVLRLPI 307

Query:   241 SFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMP 300
             S ++LHSL  GG PHATAIKLSE G+VLEVLED EGKTL FISEVEEKDG+LW+GSVL+P
Sbjct:   308 SPQRLHSLFTGGIPHATAIKLSESGKVLEVLEDKEGKTLRFISEVEEKDGKLWIGSVLVP 367

Query:   301 FIGIYN 306
             F+G+Y+
Sbjct:   368 FLGVYD 373

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 174/311 (55%), Positives = 223/311 (71%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKE-C-VRPFAPDI---EHICGRPLGIRFD 55
             GPYTGVADGRIL W G    WT+FA T++ R E C  +P   D    E ICGRPLG+RFD
Sbjct:    81 GPYTGVADGRILFWNGTR--WTDFAYTSNNRSELCDPKPSLLDYLKDEDICGRPLGLRFD 138

Query:    56 KKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS 115
             KK GDLYIADAYLG   VGPEGGLAT +  EA G PLRFTNDLDID+ +G +YFTDSS+ 
Sbjct:   139 KKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDD-EGNVYFTDSSSF 197

Query:   116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCR 175
             FQRR+FM  I+SG+ +GR+LKY   TKE T L++ L F NG++L +D +F +  E S  R
Sbjct:   198 FQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDGSFFIFCEGSIGR 257

Query:   176 ILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTL 235
             + ++WL G  +G  +V A L GFPDN+R+N +G+FWVA+H  + +F  L+     + K  
Sbjct:   258 LRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDGDFWVAVHCHRNIFTHLMAHYPRVRKFF 317

Query:   236 LKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMG 295
             LKLP+S +  + L VGG PHA A+K SE+G+VL+VLED +GK +  +SEVEEKDG+LWMG
Sbjct:   318 LKLPISVKFQYLLQVGGWPHAVAVKYSEEGKVLKVLEDSKGKVVKAVSEVEEKDGKLWMG 377

Query:   296 SVLMPFIGIYN 306
             SVLM FI +Y+
Sbjct:   378 SVLMSFIAVYD 388

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 168/311 (54%), Positives = 217/311 (69%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKE-C-VRPFAPDI---EHICGRPLGIRFD 55
             GPYTGVADGR+L W G++  W +FA T+S R E C  +P A      EHICGRPLG+RFD
Sbjct:    87 GPYTGVADGRVLFWDGEK--WIDFAYTSSNRSEICDPKPSALSYLRNEHICGRPLGLRFD 144

Query:    56 KKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS 115
             K+TGDLYIADAY+G   VGPEGGLAT LVTEA G PL FTNDLDI +  G +YFTDSS S
Sbjct:   145 KRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDIADD-GTVYFTDSSIS 203

Query:   116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCR 175
             +QRR F+  + SGD TGR+LKY+   K+  +L+  L F NGV++SRD +F +  E     
Sbjct:   204 YQRRNFLQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQFPNGVSISRDGSFFVFCEGDIGS 263

Query:   176 ILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTL 235
             + R+WL G  +G  DVFA LPG PDNVR+N  GEFWVALH ++  +  L+     L   +
Sbjct:   264 LRRYWLKGEKAGTTDVFAYLPGHPDNVRTNQKGEFWVALHCRRNYYSYLMARYPKLRMFI 323

Query:   236 LKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMG 295
             L+LP++ R  +S  +G +PH   +K S +G+++ VLED EGK +  +SEVEEKDG+LWMG
Sbjct:   324 LRLPITARTHYSFQIGLRPHGLVVKYSPEGKLMHVLEDSEGKVVRSVSEVEEKDGKLWMG 383

Query:   296 SVLMPFIGIYN 306
             SVLM F+ +Y+
Sbjct:   384 SVLMNFVAVYD 394

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2040297 SSL1 "strictosidine synthase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 153/308 (49%), Positives = 209/308 (67%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
             GPY GV DGRILKW G++LGW EFA ++  RK C    +  +E  CGRPLG+ F+KK+GD
Sbjct:    90 GPYVGVTDGRILKWSGEDLGWIEFAYSSPHRKNCS---SHKVEPACGRPLGLSFEKKSGD 146

Query:    61 LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
             LY  D YLG   VGP+GGLA ++V E  GQ + F N +DIDE +  IYF DSS ++    
Sbjct:   147 LYFCDGYLGVMKVGPKGGLAEKVVDEVEGQKVMFANQMDIDEEEDAIYFNDSSDTYHFGD 206

Query:   121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
                + L G+KTGR ++Y+K TKE  +++  L F NG+ALS D +F+L  E     + R+W
Sbjct:   207 VFYAFLCGEKTGRAIRYDKKTKEAKVIMDRLHFPNGLALSIDGSFVLSCEVPTQLVHRYW 266

Query:   181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
               GPN+G +D+FA+LPG+ DN+R    G+FWVALH+KK  F +L +++ W+GK  +K  L
Sbjct:   267 AKGPNAGTRDIFAKLPGYADNIRRTETGDFWVALHSKKTPFSRLSMIHPWVGKFFIKT-L 325

Query:   241 SFRQLHSLLVGGKPHATAIKLSEK-GEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLM 299
                 L  L  GGKPHA A+KLS K GE++E+LED EGK + FISEV+E+DG+LW GSV +
Sbjct:   326 KMELLVFLFEGGKPHAVAVKLSGKTGEIMEILEDSEGKNMKFISEVQERDGRLWFGSVFL 385

Query:   300 PFIGIYNR 307
             P + + +R
Sbjct:   386 PSVWVLDR 393

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

TAIR|locus:2040312 SSL2 "strictosidine synthase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 163/314 (51%), Positives = 218/314 (69%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPD-IEHICGRPLGIRFDKKTG 59
             GPYTG++DGRI+KW  +E  W +FAVTTS R+ C  P      EH+CGRPLG+ FDK TG
Sbjct:    63 GPYTGLSDGRIVKWLANESRWIDFAVTTSAREGCEGPHEHQRTEHVCGRPLGLAFDKSTG 122

Query:    60 DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119
             DLYIADAY+G   VGP GG+ATQ++     + LRFTN LDI+   GV+YFTDSS+ +QRR
Sbjct:   123 DLYIADAYMGLLKVGPTGGVATQVLPRELNEALRFTNSLDINPRTGVVYFTDSSSVYQRR 182

Query:   120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRF 179
              ++ +++SGDKTGRL+KY+ T K+VT LL  LAF NGVALS++  ++L+ ET+ CRILR+
Sbjct:   183 NYIGAMMSGDKTGRLMKYDNT-KQVTTLLSNLAFVNGVALSQNGDYLLVVETAMCRILRY 241

Query:   180 WLHGPNSGKQ-----DVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGK 233
             WL+  +   Q     ++FAE LPGFPDN++ +  G FWV L+ K     K  + N+WLG+
Sbjct:   242 WLNETSVKSQSHDNYEIFAEGLPGFPDNIKRSPRGGFWVGLNTKHSKLTKFAMSNAWLGR 301

Query:   234 TLLKLPLSFRQLHSLLVGGKPHATAIKLSE-KGEVLEVLEDC-EGKTLSFISEVEEKDGQ 291
               L LP+ + ++HS+      +  A++LSE  G +LEV E   E K +S ISEVEEKDG 
Sbjct:   302 AALGLPVDWMKVHSVWARYNGNGMAVRLSEDSGVILEVFEGKNENKWIS-ISEVEEKDGT 360

Query:   292 LWMGSVLMPFIGIY 305
             LW+GSV  PF G+Y
Sbjct:   361 LWVGSVNTPFAGMY 374

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 146/309 (47%), Positives = 209/309 (67%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
             GPY  V DGRILKW+GD+LGW +FA T+  R  C +    ++   CGRPLG+ F+KKTGD
Sbjct:    65 GPYAAVVDGRILKWRGDDLGWVDFAYTSPHRGNCSKT---EVVPTCGRPLGLTFEKKTGD 121

Query:    61 LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
             LYI D YLG   VGPEGGLA  +V EA G+ + F N  DIDE + V YF DSS  +  R 
Sbjct:   122 LYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQGDIDEEEDVFYFNDSSDKYHFRD 181

Query:   121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
                  +SG+++GR+++Y+K TKE  +++  L   NG+AL++DR+F++  E+    + R+W
Sbjct:   182 VFFVAVSGERSGRVIRYDKKTKEAKVIMDNLVCNNGLALNKDRSFLITCESGTSLVHRYW 241

Query:   181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
             + GP +G +D+FA++PG+PDN+R  S G+FW+ LH KK L G+LI+   WLGK L++  +
Sbjct:   242 IKGPKAGTRDIFAKVPGYPDNIRLTSTGDFWIGLHCKKNLIGRLIVKYKWLGK-LVEKTM 300

Query:   241 SFRQLHSLLVGGKPHATAIKLS-EKGEVLEVLEDCEGKTLSFISEVEEKD-GQLWMGSVL 298
                 + + + G KPH  A+K+S E GEVLE+LED EGKT+ ++SE  E+D G+LW GSV 
Sbjct:   301 KLEYVIAFINGFKPHGVAVKISGETGEVLELLEDKEGKTMKYVSEAYERDDGKLWFGSVY 360

Query:   299 MPFIGIYNR 307
              P + + +R
Sbjct:   361 WPAVWVLDR 369

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2080660 AT3G57010 [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 144/306 (47%), Positives = 199/306 (65%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
             GPY GV DGRILKW+G+ELGW +FA T+  R  C    + ++   CGRPLG+ F++KTGD
Sbjct:    66 GPYVGVTDGRILKWRGEELGWVDFAYTSPHRDNCS---SHEVVPSCGRPLGLSFERKTGD 122

Query:    61 LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
             LYI D Y G   VGPEGGLA  +V EA G+ + F N  DIDE + + YF DSS ++  R 
Sbjct:   123 LYICDGYFGVMKVGPEGGLAELVVDEAEGRKVMFANQGDIDEEEDIFYFNDSSDTYHFRD 182

Query:   121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
                  LSG K GR+++Y+   KE  +++  L   NG+ALS++ +F++  E+S     R W
Sbjct:   183 VFYVSLSGTKVGRVIRYDMKKKEAKVIMDKLRLPNGLALSKNGSFVVTCESSTNICHRIW 242

Query:   181 LHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240
             + GP SG  +VFA LPG PDN+R    G+FWVALH KK LF + +L+++W+G+  +    
Sbjct:   243 VKGPKSGTNEVFATLPGSPDNIRRTPTGDFWVALHCKKNLFTRAVLIHTWVGRFFMNTMK 302

Query:   241 SFRQLHSLLVGGKPHATAIKLS-EKGEVLEVLEDCEGKTLSFISEV-EEKDGQLWMGSVL 298
                 +H  + GGKPH   +KLS E GE+LE+LED EGKT+ ++SE  E KDG+LW+GSV 
Sbjct:   303 METVIH-FMNGGKPHGIVVKLSGETGEILEILEDSEGKTVKYVSEAYETKDGKLWIGSVY 361

Query:   299 MPFIGI 304
              P + +
Sbjct:   362 WPAVWV 367

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/287 (46%), Positives = 190/287 (66%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKE--CVRPFAPDI------EHICGRPLGI 52
             GPYTG+ADGR+++W G+ +GW  F+V TS+  E  CVR            E +CGRPLG+
Sbjct:    96 GPYTGLADGRVVRWMGEAIGWETFSVVTSKWSEEACVRGVDSTTNKQWKHEKLCGRPLGL 155

Query:    53 RFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDS 112
             RF K+TG+LYIADAY G  VVGPEGG+AT L T   G+P+ F NDLDI  + G I+FTD+
Sbjct:   156 RFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFANDLDIHRN-GSIFFTDT 214

Query:   113 STSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS 172
             S  + R      +L G+ TGRLL+Y+  TK   I+L+GLAF NG+ LS+D++F+L  ET+
Sbjct:   215 SKRYDRANHFFILLEGESTGRLLRYDPPTKTTHIVLEGLAFPNGIQLSKDQSFLLFTETT 274

Query:   173 NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLG 232
             NCR++++WL GP  G+ +V A+LPGFPDNVR N  G+FWVA+   +    +++  N W+ 
Sbjct:   275 NCRLVKYWLEGPKMGEVEVVADLPGFPDNVRINEEGQFWVAIDCCRTPAQEVLTNNPWIR 334

Query:   233 KTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTL 279
                 +LP+  + L   + G + +    +  E+G+VLEVLED +GK +
Sbjct:   335 SIYFRLPIPMKLLAKTM-GMRMYTVISRFDEEGKVLEVLEDRQGKVM 380

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2031486 SS2 "strictosidine synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 98/246 (39%), Positives = 145/246 (58%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFA-VTTSQRKE-CVRPFAPDIEHICGRPLGIRFDKKT 58
             G YTGV+ G+ILK+   E G+ +FA +T S     C       +   CGRP GI F++KT
Sbjct:    50 GFYTGVSGGKILKYL-PETGYVDFAQITESSNSSWCDGTIGTALAGRCGRPAGIAFNEKT 108

Query:    59 GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
             GDLY+ADA LG  V+ P GGLAT++     G+P +F + LD+D   GV+YFT  S+ F  
Sbjct:   109 GDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSP 168

Query:   119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
              Q + ++   D TG+L KY+ +TK VT+L++GL+ + G A+S D +F+L+++ +   I R
Sbjct:   169 IQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKR 228

Query:   179 FWLHGPNSGKQDVFAELPGFPDNV-RSNSNGEFWVALHAKKGLFG---KLILLNSWLGKT 234
             +W+ GP +G  + F      PDN+ R  S G FWVA    K +       + +NS  G+ 
Sbjct:   229 YWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWVASVVNKIIVPTNPSAVKVNS-NGEV 287

Query:   235 LLKLPL 240
             L  +PL
Sbjct:   288 LQTIPL 293

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2031511 SS3 "strictosidine synthase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
 Identities = 92/245 (37%), Positives = 140/245 (57%)

Query:     1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHI--CGRPLGIRFDKKT 58
             G YTGV  G+ILK+   + G+ +FA  T+  K  +   A    ++  CGRP GI F+ KT
Sbjct:    52 GFYTGVTGGKILKYLPKK-GYVDFAQITNSSKSSLCDGALGTTNVEKCGRPAGIAFNTKT 110

Query:    59 GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
             GDLY+ADA LG  V+   GGLA ++     G+P  F + LD+D   GV+YFT  S++F  
Sbjct:   111 GDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGP 170

Query:   119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
             R  + ++ + D TG+  KY+ + K VT+L++GL+ + G A+S D +F+L+ + +   I R
Sbjct:   171 RDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKR 230

Query:   179 FWLHGPNSGKQDVFAELPGFPDNV-RSNSNGEFWVA--LHAKKGLFGKLILLNSWLGKTL 235
             +W+ G  +G  + F      PDN+ R  S G FWVA  +++  G      +  S  GK L
Sbjct:   231 YWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVASVVNSATGPTNPSAVKVSSAGKVL 290

Query:   236 LKLPL 240
               +PL
Sbjct:   291 QTIPL 295

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!
3rd Layer	4.3.3	0.766
3rd Layer	4.3.3.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	5e-38
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-17
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	7e-09

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  129 bits (326), Expect = 5e-38
 Identities = 46/89 (51%), Positives = 64/89 (71%)

Query: 96  NDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFAN 155
           N LD+D   GV+YFTDSS+ + RRQ + ++L GDKTGRL+KY+ +TK   +LL+ L F N
Sbjct: 1   NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPN 60

Query: 156 GVALSRDRTFILIAETSNCRILRFWLHGP 184
           G+ALS D +F+L  ET   RI ++W+ GP
Sbjct: 61  GIALSPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 50/182 (27%), Positives = 71/182 (39%), Gaps = 18/182 (9%)

Query: 41  DIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPE-GGLATQLVTEAAGQPLRFTNDLD 99
                 G   G   D   G   IA    G +++ P+ GG  T L     G PL   ND  
Sbjct: 61  VFPSPGGFSSGALIDA--GGRLIA-CEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117

Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDK-TGRLLKYEKTTKEVTILLQGLAFANGVA 158
           +D   G I+F D         +     S ++ TG L + +     V +L   L   NG+A
Sbjct: 118 VDPD-GRIWFGDMG-------YFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLA 169

Query: 159 LSRDRTFILIAETSNCRILRFWLHGP-----NSGKQDVFAELPGFPDNVRSNSNGEFWVA 213
            S D   + +A+T   RI R+ L               F E PG PD +  +++G  WVA
Sbjct: 170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229

Query: 214 LH 215
             
Sbjct: 230 AV 231

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 21/173 (12%)

Query: 49  PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPL-RFTNDLDIDEHKGVI 107
           P+G    +  G L +A    G  ++  + G  T L      +PL RF ND  +D   G  
Sbjct: 42  PVGAIALRDDGRLIVALKR-GLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPD-GRF 98

Query: 108 YFTDSSTSFQRRQFMS-SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI 166
           +F            M   I  G + G L + +   K V  +L G+  +NG+A S D   +
Sbjct: 99  WFGT----------MGFDIAPGGEPGALYRLDPDGK-VERVLDGITISNGLAWSPDGKTL 147

Query: 167 LIAETSNCRILRF--WLHGPNSGKQDVFAEL---PGFPDNVRSNSNGEFWVAL 214
             A++   RI  F     G     + VFA+     G PD +  ++ G  WVA 
Sbjct: 148 YFADSPTRRIWAFDYDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWVAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.95
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.81
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.81
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.72
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.7
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.7
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.66
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.44
PRK11028	330	6-phosphogluconolactonase; Provisional	99.43
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.31
PRK11028	330	6-phosphogluconolactonase; Provisional	99.28
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.19
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.19
COG3391	381	Uncharacterized conserved protein [Function unknow	99.13
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.11
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.01
COG3391	381	Uncharacterized conserved protein [Function unknow	98.97
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.96
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.91
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.87
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.87
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.85
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.84
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.81
KOG2055	514	consensus WD40 repeat protein [General function pr	98.77
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.75
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.74
PRK04792	448	tolB translocation protein TolB; Provisional	98.73
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.72
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.69
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.69
PRK04922	433	tolB translocation protein TolB; Provisional	98.63
PRK02888	635	nitrous-oxide reductase; Validated	98.62
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.59
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.58
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.57
PRK05137	435	tolB translocation protein TolB; Provisional	98.56
PRK03629	429	tolB translocation protein TolB; Provisional	98.55
PRK04922	433	tolB translocation protein TolB; Provisional	98.53
PRK02889	427	tolB translocation protein TolB; Provisional	98.51
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.51
PRK00178	430	tolB translocation protein TolB; Provisional	98.5
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.49
PRK05137	435	tolB translocation protein TolB; Provisional	98.48
PRK03629	429	tolB translocation protein TolB; Provisional	98.45
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	98.45
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.45
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.43
PRK04043	419	tolB translocation protein TolB; Provisional	98.43
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.43
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.42
PRK04792	448	tolB translocation protein TolB; Provisional	98.42
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.4
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.4
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.39
PRK01742	429	tolB translocation protein TolB; Provisional	98.38
PRK02889	427	tolB translocation protein TolB; Provisional	98.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.33
PRK04043	419	tolB translocation protein TolB; Provisional	98.26
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.26
PRK00178	430	tolB translocation protein TolB; Provisional	98.25
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.21
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.19
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.17
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.16
KOG0266	456	consensus WD40 repeat-containing protein [General	98.16
COG4946	668	Uncharacterized protein related to the periplasmic	98.16
PRK01742	429	tolB translocation protein TolB; Provisional	98.15
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.12
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.11
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.08
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.08
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.05
KOG2139	445	consensus WD40 repeat protein [General function pr	98.05
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.04
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.04
PRK01029	428	tolB translocation protein TolB; Provisional	98.02
PRK01029	428	tolB translocation protein TolB; Provisional	98.01
PTZ00421	493	coronin; Provisional	98.0
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	97.99
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.99
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.99
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.97
KOG0266	456	consensus WD40 repeat-containing protein [General	97.96
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.89
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.88
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.83
KOG0289	506	consensus mRNA splicing factor [General function p	97.82
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.82
KOG0286	343	consensus G-protein beta subunit [General function	97.82
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.8
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.74
KOG1407	313	consensus WD40 repeat protein [Function unknown]	97.74
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.74
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.73
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.72
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.7
KOG0639	705	consensus Transducin-like enhancer of split protei	97.7
KOG1407	313	consensus WD40 repeat protein [Function unknown]	97.69
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	97.69
PTZ00420	568	coronin; Provisional	97.68
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.68
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.65
PRK02888	635	nitrous-oxide reductase; Validated	97.65
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.64
PLN00181	793	protein SPA1-RELATED; Provisional	97.63
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.59
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.57
PTZ00420	568	coronin; Provisional	97.56
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	97.55
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.54
PTZ00421	493	coronin; Provisional	97.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.53
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.51
PLN00181	793	protein SPA1-RELATED; Provisional	97.5
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.5
COG3211	616	PhoX Predicted phosphatase [General function predi	97.49
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.44
KOG0286	343	consensus G-protein beta subunit [General function	97.43
KOG1539	910	consensus WD repeat protein [General function pred	97.4
KOG1273	405	consensus WD40 repeat protein [General function pr	97.39
KOG0645	312	consensus WD40 repeat protein [General function pr	97.39
KOG0639	705	consensus Transducin-like enhancer of split protei	97.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.36
KOG2048	691	consensus WD40 repeat protein [General function pr	97.36
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	97.36
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.35
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.35
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.35
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.34
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.34
KOG1274	933	consensus WD40 repeat protein [General function pr	97.34
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.33
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.29
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.28
COG4946	668	Uncharacterized protein related to the periplasmic	97.27
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.27
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.27
KOG0649	325	consensus WD40 repeat protein [General function pr	97.26
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	97.25
KOG1274	933	consensus WD40 repeat protein [General function pr	97.22
KOG0310	487	consensus Conserved WD40 repeat-containing protein	97.2
KOG0289	506	consensus mRNA splicing factor [General function p	97.19
KOG0283	712	consensus WD40 repeat-containing protein [Function	97.13
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.12
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.12
KOG2096	420	consensus WD40 repeat protein [General function pr	97.12
KOG0296	399	consensus Angio-associated migratory cell protein	97.1
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.08
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.08
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	97.06
KOG1273	405	consensus WD40 repeat protein [General function pr	97.06
KOG1539	910	consensus WD repeat protein [General function pred	97.02
KOG0646	476	consensus WD40 repeat protein [General function pr	97.0
KOG2055	514	consensus WD40 repeat protein [General function pr	96.99
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	96.89
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.83
KOG0643	327	consensus Translation initiation factor 3, subunit	96.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.78
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	96.75
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.71
KOG2048	691	consensus WD40 repeat protein [General function pr	96.69
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.68
KOG0296	399	consensus Angio-associated migratory cell protein	96.68
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.67
PHA02713	557	hypothetical protein; Provisional	96.63
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.62
KOG0646	476	consensus WD40 repeat protein [General function pr	96.54
KOG0284	464	consensus Polyadenylation factor I complex, subuni	96.49
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.43
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.42
KOG0643	327	consensus Translation initiation factor 3, subunit	96.4
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.38
KOG0294	362	consensus WD40 repeat-containing protein [Function	96.38
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.32
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.32
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.32
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.29
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.28
PRK13616	591	lipoprotein LpqB; Provisional	96.27
KOG2111	346	consensus Uncharacterized conserved protein, conta	96.17
KOG0301	745	consensus Phospholipase A2-activating protein (con	96.08
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.07
KOG2139	445	consensus WD40 repeat protein [General function pr	96.06
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	96.01
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.01
PHA02713	557	hypothetical protein; Provisional	96.01
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	95.99
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.92
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	95.89
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.88
COG3211	616	PhoX Predicted phosphatase [General function predi	95.88
KOG0310	487	consensus Conserved WD40 repeat-containing protein	95.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.81
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.81
KOG0973	942	consensus Histone transcription regulator HIRA, WD	95.8
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.73
KOG0645	312	consensus WD40 repeat protein [General function pr	95.69
KOG0308	735	consensus Conserved WD40 repeat-containing protein	95.62
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	95.6
KOG0641	350	consensus WD40 repeat protein [General function pr	95.59
COG5276	370	Uncharacterized conserved protein [Function unknow	95.52
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.52
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.5
KOG4328	498	consensus WD40 protein [Function unknown]	95.49
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.44
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.38
KOG0301	745	consensus Phospholipase A2-activating protein (con	95.38
PRK13684	334	Ycf48-like protein; Provisional	95.37
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	95.36
PHA02790	480	Kelch-like protein; Provisional	95.34
KOG0303	472	consensus Actin-binding protein Coronin, contains	95.32
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.26
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.21
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.2
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	95.2
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	95.07
PRK13684	334	Ycf48-like protein; Provisional	95.02
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	95.01
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.0
PHA03098	534	kelch-like protein; Provisional	94.99
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	94.9
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	94.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	94.84
KOG0288	459	consensus WD40 repeat protein TipD [General functi	94.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	94.7
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	94.61
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	94.59
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.55
PF07494	24	Reg_prop: Two component regulator propeller; Inter	94.52
KOG2315	566	consensus Predicted translation initiation factor	94.48
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.35
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.32
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	94.31
PHA02790	480	Kelch-like protein; Provisional	94.27
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.22
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	94.19
KOG2321	703	consensus WD40 repeat protein [General function pr	94.09
KOG4328	498	consensus WD40 protein [Function unknown]	93.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	93.91
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	93.84
KOG2096	420	consensus WD40 repeat protein [General function pr	93.83
KOG3881	412	consensus Uncharacterized conserved protein [Funct	93.79
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.76
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	93.72
PRK13616	591	lipoprotein LpqB; Provisional	93.71
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	93.69
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	93.63
KOG0295	406	consensus WD40 repeat-containing protein [Function	93.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	93.54
KOG1963	792	consensus WD40 repeat protein [General function pr	93.53
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.35
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.29
KOG0640	430	consensus mRNA cleavage stimulating factor complex	93.26
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	93.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.14
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.04
KOG2321	703	consensus WD40 repeat protein [General function pr	93.03
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.97
PHA03098	534	kelch-like protein; Provisional	92.95
KOG1215	877	consensus Low-density lipoprotein receptors contai	92.84
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	92.84
KOG0647	347	consensus mRNA export protein (contains WD40 repea	92.82
KOG1963	792	consensus WD40 repeat protein [General function pr	92.71
PF07494	24	Reg_prop: Two component regulator propeller; Inter	92.68
KOG2315	566	consensus Predicted translation initiation factor	92.66
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	92.58
KOG0308	735	consensus Conserved WD40 repeat-containing protein	92.31
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	92.26
KOG3881	412	consensus Uncharacterized conserved protein [Funct	92.23
KOG0270	463	consensus WD40 repeat-containing protein [Function	92.22
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	92.03
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	91.95
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	91.4
KOG0269	839	consensus WD40 repeat-containing protein [Function	91.31
KOG1310	758	consensus WD40 repeat protein [General function pr	91.31
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	90.76
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	90.22
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.1
KOG4547	541	consensus WD40 repeat-containing protein [General	90.06
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	89.95
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	89.65
KOG0641	350	consensus WD40 repeat protein [General function pr	89.48
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	89.42
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.3
KOG0771	398	consensus Prolactin regulatory element-binding pro	89.26
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	89.21
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	88.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	88.52
KOG0295	406	consensus WD40 repeat-containing protein [Function	88.51
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	88.36
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	88.22
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	88.21
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	87.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	87.53
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.45
KOG4227	609	consensus WD40 repeat protein [General function pr	87.05
KOG0302	440	consensus Ribosome Assembly protein [General funct	87.04
KOG0649	325	consensus WD40 repeat protein [General function pr	86.96
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	86.92
smart00284	255	OLF Olfactomedin-like domains.	86.75
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	86.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	86.49
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	85.93
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	85.7
KOG4227	609	consensus WD40 repeat protein [General function pr	85.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	85.4
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	85.26
KOG0269	839	consensus WD40 repeat-containing protein [Function	84.59
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	83.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	83.57
COG5276	370	Uncharacterized conserved protein [Function unknow	83.54
KOG4283	397	consensus Transcription-coupled repair protein CSA	82.86
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.72
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	82.58
KOG0270	463	consensus WD40 repeat-containing protein [Function	81.64
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	81.16
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	81.15
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	80.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	80.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	80.71
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	80.3
KOG1230	521	consensus Protein containing repeated kelch motifs	80.2

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=4.1e-39  Score=272.78  Aligned_cols=306  Identities=52%  Similarity=0.962  Sum_probs=266.1

Q ss_pred             CCcccccCcEEEEEeCCCCCeEEEEEe--ccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCC
Q 046018            1 GPYTGVADGRILKWQGDELGWTEFAVT--TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG   78 (310)
Q Consensus         1 ~~~~~~~~~~i~~~~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~   78 (310)
                      |||+++.+++++.|.....+|+++...  ..++..|..+.-...+..+++|.||+++.+.|+|||+|..-|++.++++++
T Consensus        67 gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~  146 (376)
T KOG1520|consen   67 GPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGG  146 (376)
T ss_pred             CceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCC
Confidence            689999999999999988889999988  555566654322566788999999999996669999999999999999999


Q ss_pred             eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEE
Q 046018           79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA  158 (310)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~  158 (310)
                      +.+.+.+...+.+....|++.++++|. +|+|+++.+|+++..+..++.++.+|++++||+.++..+++..++.+|||++
T Consensus       147 ~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGla  225 (376)
T KOG1520|consen  147 LAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLA  225 (376)
T ss_pred             cceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhccccccccc
Confidence            887777776777888999999999998 9999999999999999999999999999999999988888889999999999


Q ss_pred             EecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEee
Q 046018          159 LSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       159 ~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                      ++||+.+++++++...+|.+|.+.+.+.+..+.|++ +||+||||..+++|++||+.........+.+..++.-++++..
T Consensus       226 LS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~  305 (376)
T KOG1520|consen  226 LSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAK  305 (376)
T ss_pred             CCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHh
Confidence            999999999999999999999999988888899988 9999999999999999999988777666667777878887777


Q ss_pred             ccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          238 LPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      ++.+...+....-+..++..+...|.+|++++.+.+.+|.....++.+.+++|+||+||...++|.++++
T Consensus       306 ~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl  375 (376)
T KOG1520|consen  306 LPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKL  375 (376)
T ss_pred             hccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEec
Confidence            6655554444444444555666778999999999998898877788888889999999999999999885

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.96  E-value=2.5e-27  Score=200.17  Aligned_cols=231  Identities=28%  Similarity=0.452  Sum_probs=173.3

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA   87 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~   87 (310)
                      .-+.|++..+.  |++.....++++++.+.....  .....|.|++++..+|+||+++.. ++.++|+.+++++.+....
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPGPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSSEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCCCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence            45789986665  999889999999887733221  223449999999338999999875 5666799999988887764


Q ss_pred             CCc-cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE
Q 046018           88 AGQ-PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI  166 (310)
Q Consensus        88 ~~~-~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l  166 (310)
                      .+. +...||+++++++|+ +|++++......         ....|.|++++++ ++.+.+...+..||||+++||++.|
T Consensus        80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS--EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred             CCCcccCCCceEEEcCCCC-EEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchhe
Confidence            333 677899999999999 999997532110         0012889999998 7888888888999999999999999


Q ss_pred             EEEecCCceEEEEEccCC--CCCcceeeeeCC---CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          167 LIAETSNCRILRFWLHGP--NSGKQDVFAELP---GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       167 yv~~~~~~~i~~~~~~~~--~~~~~~~~~~~~---~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      |++++.+++|++|+++..  .....+.+...+   +.|+|+++|++|+||||.+.++.     |.+++++|+.+..+++|
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-----I~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-----IVVFDPDGKLLREIELP  223 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-----EEEEETTSCEEEEEE-S
T ss_pred             eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-----EEEECCCccEEEEEcCC
Confidence            999999999999999743  233445555432   45999999999999999998776     67777778888888887


Q ss_pred             hhhhcccccCCCCc-eEEE
Q 046018          242 FRQLHSLLVGGKPH-ATAI  259 (310)
Q Consensus       242 ~~~~~~~~~~~~~~-~~~~  259 (310)
                      .+.+++|+|++++. .+++
T Consensus       224 ~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEE
T ss_pred             CCCEEEEEEECCCCCEEEE
Confidence            67788888866553 4444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.95  E-value=2.9e-26  Score=196.24  Aligned_cols=232  Identities=25%  Similarity=0.339  Sum_probs=173.9

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEee
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTE   86 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~   86 (310)
                      .-+.|+++...  |+|+....++++++..............+.++.++. .+.|+++.+  |+++++++.+.. +.+...
T Consensus        28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~-~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDA-GGRLIACEH--GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             cCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecC-CCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence            44568887775  999999999999987533344455556677888888 878877755  466666665555 556555


Q ss_pred             cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE
Q 046018           87 AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI  166 (310)
Q Consensus        87 ~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l  166 (310)
                      ..+.+.+++|++.++++|+ +||+++.. +.     .........|.||++++.++..+.+...+..||||+|+||++.|
T Consensus       105 ~~~~~~~r~ND~~v~pdG~-~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tl  177 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGR-IWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTL  177 (307)
T ss_pred             cCCCCcCCCCceeEcCCCC-EEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEE
Confidence            5677788999999999999 99999872 00     01112335778999999654444444448899999999999999


Q ss_pred             EEEecCCceEEEEEccC--CCCCcce--eeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          167 LIAETSNCRILRFWLHG--PNSGKQD--VFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       167 yv~~~~~~~i~~~~~~~--~~~~~~~--~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      |++++..++|++|+.+.  .......  .+.. .++.|||+++|++|+||++...++..    +.+++++|+.+..+.+|
T Consensus       178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~----v~~~~pdG~l~~~i~lP  253 (307)
T COG3386         178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR----VVRFNPDGKLLGEIKLP  253 (307)
T ss_pred             EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce----EEEECCCCcEEEEEECC
Confidence            99999999999998872  2222222  2222 46899999999999999655554322    88999999999999999


Q ss_pred             hhhhcccccCCCCc
Q 046018          242 FRQLHSLLVGGKPH  255 (310)
Q Consensus       242 ~~~~~~~~~~~~~~  255 (310)
                      ...+++|+|++.+.
T Consensus       254 ~~~~t~~~FgG~~~  267 (307)
T COG3386         254 VKRPTNPAFGGPDL  267 (307)
T ss_pred             CCCCccceEeCCCc
Confidence            88999999998764

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.81  E-value=6.1e-18  Score=137.12  Aligned_cols=261  Identities=13%  Similarity=0.122  Sum_probs=182.2

Q ss_pred             eCCCCC--eEEEEE-eccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCc
Q 046018           15 QGDELG--WTEFAV-TTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQ   90 (310)
Q Consensus        15 ~~~~~~--W~~~~~-~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~   90 (310)
                      -+..++  |++.-. ..+.++|+++..-... .....+|++|.+++ +|..||++...+|.|+|+++.+++++.-. ...
T Consensus        68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~aI~R~dpkt~evt~f~lp-~~~  145 (353)
T COG4257          68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGLAIGRLDPKTLEVTRFPLP-LEH  145 (353)
T ss_pred             ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcceeEEecCcccceEEeecc-ccc
Confidence            344455  764433 4466678776332222 33447899999999 99999999988999999999888877332 222


Q ss_pred             cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEE
Q 046018           91 PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIA  169 (310)
Q Consensus        91 ~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~  169 (310)
                      .....+..++|++|+ ||++..                  .|.--++||.++.++++.. ....|+||+..|||. +|++
T Consensus       146 a~~nlet~vfD~~G~-lWFt~q------------------~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwya  205 (353)
T COG4257         146 ADANLETAVFDPWGN-LWFTGQ------------------IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYA  205 (353)
T ss_pred             CCCcccceeeCCCcc-EEEeec------------------cccceecCcccCceeeeccCCCCCCcceEECCCCc-EEEE
Confidence            334578899999999 999984                  3333478998887776543 345699999999999 9999


Q ss_pred             ecCCceEEEEEccCCCCCcceeeee---CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhh--
Q 046018          170 ETSNCRILRFWLHGPNSGKQDVFAE---LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ--  244 (310)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~--  244 (310)
                      +-..+.|.++|+...   +.+.+..   +......+-.|+.|++|++++....     +..+++.-+.=...++|...  
T Consensus       206 slagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~-----l~rfdPs~~sW~eypLPgs~ar  277 (353)
T COG4257         206 SLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGS-----LHRFDPSVTSWIEYPLPGSKAR  277 (353)
T ss_pred             eccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccCCce-----eeEeCcccccceeeeCCCCCCC
Confidence            888899999998643   2233321   1234567899999999999998887     67787766665556665433  


Q ss_pred             hcc--------cccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          245 LHS--------LLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       245 ~~~--------~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      +.+        .|+..-+.+.+.+||+....++++..+.-.  .+.-.+-...|++|++...-+.|..+..
T Consensus       278 pys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~lv~~r~  346 (353)
T COG4257         278 PYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN--SGNIQLDGRPGELWFTEAGVDALVTTRI  346 (353)
T ss_pred             cceeeeccCCcEEeeccccCceeecCcccceEEEecCCCCC--CCceeccCCCCceeecccCcceeEEEEe
Confidence            222        234444556788999988888888654321  1222222458999999998888887753

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.81  E-value=3e-18  Score=135.84  Aligned_cols=237  Identities=16%  Similarity=0.157  Sum_probs=164.5

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccce-eceEEEeCCCC--cEEEEECCCc--eEEEeCCCCeEEE
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGR-PLGIRFDKKTG--DLYIADAYLG--FQVVGPEGGLATQ   82 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gl~~d~~~g--~l~v~~~~~g--i~~~d~~~~~~~~   82 (310)
                      .-++|+.+.+.  |+|++..+++++|..+.+ ......... ..|.++-- .|  +.+++.-+..  |..+|........
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~-v~ra~ie~p~~ag~ilpv-~~~~q~~~v~~G~kf~i~nwd~~~~~a~v   95 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNK-VYRAKIEGPPSAGFILPV-EGGPQEFAVGCGSKFVIVNWDGVSESAKV   95 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhh-eEEEEEecCcceeEEEEe-cCCCceEEEeecceEEEEEcccccceeee
Confidence            45678887777  999999999999988855 233333232 23444422 33  5677766644  5555533333333


Q ss_pred             EEeec---CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEE
Q 046018           83 LVTEA---AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVAL  159 (310)
Q Consensus        83 ~~~~~---~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~  159 (310)
                      +...+   ....-++.|+-.+||+|+ .|.+.+...-.       .+ ....|.+++|-+. ++.+.+.....-+||++|
T Consensus        96 ~~t~~ev~~d~kknR~NDgkvdP~Gr-yy~GtMad~~~-------~l-e~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~W  165 (310)
T KOG4499|consen   96 YRTLFEVQPDRKKNRLNDGKVDPDGR-YYGGTMADFGD-------DL-EPIGGELYSWLAG-HQVELIWNCVGISNGLAW  165 (310)
T ss_pred             eeeccccCchHHhcccccCccCCCCc-eeeeeeccccc-------cc-cccccEEEEeccC-CCceeeehhccCCccccc
Confidence            33321   233456789999999999 79888753211       11 1125667777665 678877888888999999


Q ss_pred             ecCCCeEEEEecCCceEEEEE--ccCCCCCcceeeeeC-------CCCCCeeEECCCCCEEEEEecCCccceeeeeeccc
Q 046018          160 SRDRTFILIAETSNCRILRFW--LHGPNSGKQDVFAEL-------PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSW  230 (310)
Q Consensus       160 ~~d~~~lyv~~~~~~~i~~~~--~~~~~~~~~~~~~~~-------~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~  230 (310)
                      +.|.+.+|+.++.+-.|-.||  ..++....+..+.++       +-.|||+++|.+|+||||+++++.+    ...++.
T Consensus       166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V----~~~dp~  241 (310)
T KOG4499|consen  166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV----QKVDPT  241 (310)
T ss_pred             cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE----EEECCC
Confidence            999999999999999995555  555555444433221       2479999999999999999999885    556678


Q ss_pred             cccEEeeccchhhhhcccccCCCCc-eEEEEEC
Q 046018          231 LGKTLLKLPLSFRQLHSLLVGGKPH-ATAIKLS  262 (310)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d  262 (310)
                      +|+.+..+.+|....++|+|++..- .+++...
T Consensus       242 tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  242 TGKILLEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             CCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence            9999999999999999999999864 3444443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.72  E-value=1.6e-14  Score=143.51  Aligned_cols=218  Identities=19%  Similarity=0.229  Sum_probs=142.2

Q ss_pred             ccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeec------CC------ccccCCcceEEeCCCCEEEEEe
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEA------AG------QPLRFTNDLDIDEHKGVIYFTD  111 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~------~~------~~~~~~~~i~~d~~g~~l~v~~  111 (310)
                      ....|+||+++++++.|||++.. +.|.++|..++.++.+....      .+      ..+..|.+|++++++..+||++
T Consensus       622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence            34679999999855669999987 45899999888876664321      00      1245799999999443499998


Q ss_pred             CCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec---------------CCcccceEEEecCCCeEEEEecCCceE
Q 046018          112 SSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ---------------GLAFANGVALSRDRTFILIAETSNCRI  176 (310)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~---------------~~~~~~gi~~~~d~~~lyv~~~~~~~i  176 (310)
                      ..                 .+.|++||+.++....+..               .+..|+||+++||++.|||+++.+++|
T Consensus       702 ~~-----------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        702 AG-----------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             CC-----------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            64                 6678889887776554321               234689999999999999999999999


Q ss_pred             EEEEccCCCCCcc-----------eeeee--------CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEee
Q 046018          177 LRFWLHGPNSGKQ-----------DVFAE--------LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       177 ~~~~~~~~~~~~~-----------~~~~~--------~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                      .+||++++.....           ..+..        .-..|.++++|++|++||++..++.     |..++..+..+..
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r-----IrviD~~tg~v~t  839 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK-----IKKLDPATKRVTT  839 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-----EEEEECCCCeEEE
Confidence            9999874321000           00000        1136899999999999999998876     4444433322221


Q ss_pred             ccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEE-eCCEEEEecCCCCeEEEecc
Q 046018          238 LPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEE-KDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~~~  307 (310)
                      +...            ..    .-..+|...       ...+..++.++. .+|+|||+...+++|.++++
T Consensus       840 iaG~------------G~----~G~~dG~~~-------~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        840 LAGT------------GK----AGFKDGKAL-------KAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             Eecc------------CC----cCCCCCccc-------ccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            1000            00    000112110       112344555543 46789999888888888875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.70  E-value=9.7e-15  Score=123.32  Aligned_cols=208  Identities=20%  Similarity=0.274  Sum_probs=141.5

Q ss_pred             eceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEe-CCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID-EHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      +.|+++++.+|.||+++... .|+++++++++...+ ..      ..|++++++ ++|+ +|+++               
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~-~~------~~~~G~~~~~~~g~-l~v~~---------------   58 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI-DL------PGPNGMAFDRPDGR-LYVAD---------------   58 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-ES------SSEEEEEEECTTSE-EEEEE---------------
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE-ec------CCCceEEEEccCCE-EEEEE---------------
Confidence            56899997789999999875 499999999876543 22      128999999 7777 99998               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEec------CCcccceEEEecCCCeEEEEecCC--------ceEEEEEccCCCCCcceee
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQ------GLAFANGVALSRDRTFILIAETSN--------CRILRFWLHGPNSGKQDVF  192 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~------~~~~~~gi~~~~d~~~lyv~~~~~--------~~i~~~~~~~~~~~~~~~~  192 (310)
                          .+.+..+|+++++.+.+..      ....||.++++++|+ +|++++..        ++|+++++++    .....
T Consensus        59 ----~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~  129 (246)
T PF08450_consen   59 ----SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG----KVTVV  129 (246)
T ss_dssp             ----TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----EEEEE
T ss_pred             ----cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC----eEEEE
Confidence                4456666999888876543      345689999999998 99998764        6799999772    23333


Q ss_pred             eeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeecccc--cc-E-----EeeccchhhhhcccccCCCCc--------
Q 046018          193 AELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWL--GK-T-----LLKLPLSFRQLHSLLVGGKPH--------  255 (310)
Q Consensus       193 ~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~--g~-~-----~~~~~~~~~~~~~~~~~~~~~--------  255 (310)
                      ...-..|++|+++++|+ ||+++...+.     |..++..  +. .     +..++.....|.++++...+.        
T Consensus       130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  130 ADGLGFPNGIAFSPDGKTLYVADSFNGR-----IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             EEEESSEEEEEEETTSSEEEEEETTTTE-----EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred             ecCcccccceEECCcchheeecccccce-----eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence            33225699999999996 8888877665     4454432  22 1     222222112355555554332        


Q ss_pred             eEEEEECCCCCEEEEEEcCCCCeecceeEEEEe---CCEEEEecC
Q 046018          256 ATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK---DGQLWMGSV  297 (310)
Q Consensus       256 ~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~l~vgs~  297 (310)
                      ..+.+++++|+++..+..+.    ..++.++..   .++|||.+.
T Consensus       205 ~~I~~~~p~G~~~~~i~~p~----~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  205 GRIVVFDPDGKLLREIELPV----PRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             TEEEEEETTSCEEEEEE-SS----SSEEEEEEESTTSSEEEEEEB
T ss_pred             CEEEEECCCccEEEEEcCCC----CCEEEEEEECCCCCEEEEEeC
Confidence            35667888898888887652    246777653   579999874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.70  E-value=7.4e-15  Score=119.38  Aligned_cols=230  Identities=13%  Similarity=0.127  Sum_probs=157.9

Q ss_pred             ccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ....|..++.++ +|.+|......+ |-++|+.+++.+++..    .....|..|.+.|||. .||++.+          
T Consensus        60 ~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypL----g~Ga~Phgiv~gpdg~-~Witd~~----------  123 (353)
T COG4257          60 NGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPL----GSGASPHGIVVGPDGS-AWITDTG----------  123 (353)
T ss_pred             CCCCccccccCC-CCceEEecCccccceecCCCCCceEEEec----CCCCCCceEEECCCCC-eeEecCc----------
Confidence            335788899999 999999988755 8999999999876632    2345899999999999 9999943          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCCcc----cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGLAF----ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGF  198 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~----~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~  198 (310)
                             . .|.|+|+++.+++.+.-....    -+-..|+++|+ ||++.+ .+---++|+...   ..+++.. ..+.
T Consensus       124 -------~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa~~---~i~vfpaPqG~g  190 (353)
T COG4257         124 -------L-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPARN---VISVFPAPQGGG  190 (353)
T ss_pred             -------c-eeEEecCcccceEEeecccccCCCcccceeeCCCcc-EEEeec-cccceecCcccC---ceeeeccCCCCC
Confidence                   2 699999998888876533333    25678999987 898865 344456666532   2344433 4467


Q ss_pred             CCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhh---hccc--------ccCCCCceEEEEECCCCCE
Q 046018          199 PDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ---LHSL--------LVGGKPHATAIKLSEKGEV  267 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~d~~g~~  267 (310)
                      |.|||+.++|.+|++...++-+    ..+++..+ .-++++.|...   ...+        +........+.++||..+.
T Consensus       191 pyGi~atpdGsvwyaslagnai----aridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         191 PYGICATPDGSVWYASLAGNAI----ARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             CcceEECCCCcEEEEeccccce----EEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            9999999999999999888763    34445455 44444444321   1112        2222233466788887655


Q ss_pred             EEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecccc
Q 046018          268 LEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRFR  309 (310)
Q Consensus       268 ~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~~~  309 (310)
                      =..|..++.+. ..-+.-++..|++|+.....+.|.+||.+.
T Consensus       266 W~eypLPgs~a-rpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         266 WIEYPLPGSKA-RPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             ceeeeCCCCCC-CcceeeeccCCcEEeeccccCceeecCccc
Confidence            55565554332 222333466899999999999999999763

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.66  E-value=1.1e-15  Score=105.50  Aligned_cols=87  Identities=56%  Similarity=1.017  Sum_probs=72.8

Q ss_pred             cceEEeCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCc
Q 046018           96 NDLDIDEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNC  174 (310)
Q Consensus        96 ~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~  174 (310)
                      |+++++++ |. +|+|+++.+|....++..++++..+|+|++|||.+++.+++..++..||||++++|+.+|+|+++...
T Consensus         1 ndldv~~~~g~-vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~   79 (89)
T PF03088_consen    1 NDLDVDQDTGT-VYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRY   79 (89)
T ss_dssp             -EEEE-TTT---EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred             CceeEecCCCE-EEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCc
Confidence            57899998 77 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEccC
Q 046018          175 RILRFWLHG  183 (310)
Q Consensus       175 ~i~~~~~~~  183 (310)
                      +|.+|.+.|
T Consensus        80 Ri~rywl~G   88 (89)
T PF03088_consen   80 RILRYWLKG   88 (89)
T ss_dssp             EEEEEESSS
T ss_pred             eEEEEEEeC
Confidence            999999875

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.59  E-value=1.2e-12  Score=130.22  Aligned_cols=159  Identities=14%  Similarity=0.171  Sum_probs=114.6

Q ss_pred             cccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeec-C--------CccccCCcceEEeCCCCEEEEEeCC
Q 046018           44 HICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEA-A--------GQPLRFTNDLDIDEHKGVIYFTDSS  113 (310)
Q Consensus        44 ~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~-~--------~~~~~~~~~i~~d~~g~~l~v~~~~  113 (310)
                      .....|.++++|+.+|+|||++..+ .|.++|.++.....+.... .        ...+..|.+|+++++++.|||++..
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence            3446788999998678999999884 5999999876544332211 0        1235679999999988779999854


Q ss_pred             CchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-----------------CcccceEEEecCCCeEEEEecCCceE
Q 046018          114 TSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-----------------LAFANGVALSRDRTFILIAETSNCRI  176 (310)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----------------~~~~~gi~~~~d~~~lyv~~~~~~~i  176 (310)
                                       .+.|.++|..++..+++...                 +..|.+++++|+++.+||++..+++|
T Consensus       645 -----------------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I  707 (1057)
T PLN02919        645 -----------------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI  707 (1057)
T ss_pred             -----------------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence                             56788999887777665321                 34688999999777799999999999


Q ss_pred             EEEEccCCCCCcc------eee----e--eCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          177 LRFWLHGPNSGKQ------DVF----A--ELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       177 ~~~~~~~~~~~~~------~~~----~--~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ++++..++.....      ...    .  .....|.+|+++++|+ |||++..++.
T Consensus       708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            9999864321000      000    0  0114689999999986 9999988776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=5.4e-12  Score=111.82  Aligned_cols=156  Identities=16%  Similarity=0.185  Sum_probs=102.7

Q ss_pred             cceeceEEEeCCCCcEEEEECC-CceEEEeC--CCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY-LGFQVVGP--EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~--~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..+||.+.++++...||+++.+ +.|+.++.  .+++++..... .......|++|+++|+|+++|+....         
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~---------  212 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL---------  212 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT---------
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC---------
Confidence            4789999999955569999987 45665554  44445442221 23445689999999999999999843         


Q ss_pred             hhhhcCCCCceEE--EEeCCCCeEEEEe---c---C---CcccceEEEecCCCeEEEEecCCceEEEEEccCC--CCCcc
Q 046018          123 SSILSGDKTGRLL--KYEKTTKEVTILL---Q---G---LAFANGVALSRDRTFILIAETSNCRILRFWLHGP--NSGKQ  189 (310)
Q Consensus       123 ~~~~~~~~~g~v~--~~d~~~~~~~~~~---~---~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~--~~~~~  189 (310)
                              .+.|.  .++.+++.++.+.   .   .   ...+.+|+++|||++||+++..++.|.+|+.+..  .+...
T Consensus       213 --------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~  284 (345)
T PF10282_consen  213 --------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV  284 (345)
T ss_dssp             --------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE
T ss_pred             --------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE
Confidence                    55554  4554466665432   1   1   1257899999999999999999999999998632  22222


Q ss_pred             eeeeeCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          190 DVFAELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       190 ~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ..+......|++++++++|+ |||++...+.
T Consensus       285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~  315 (345)
T PF10282_consen  285 QTVPTGGKFPRHFAFSPDGRYLYVANQDSNT  315 (345)
T ss_dssp             EEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence            22222345699999999996 6666666554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.51  E-value=3.5e-11  Score=106.67  Aligned_cols=155  Identities=14%  Similarity=0.186  Sum_probs=105.7

Q ss_pred             cceeceEEEeCCCCcEEEEECC---C-c--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY---L-G--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~---~-g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      ...|..|+++++...||++...   . +  .++++.++++++.+.....  ....|..+++++++++||+++..      
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~~i~~~~~g~~l~vany~------  107 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPCHIAVDPDGRFLYVANYG------  107 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEEEEEECTTSSEEEEEETT------
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcEEEEEecCCCEEEEEEcc------
Confidence            3678899999977789999884   2 3  4566777678776644321  23468899999999999999854      


Q ss_pred             hhhhhhhcCCCCceEEEEeCCC-CeEEEEe--------------cCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          120 QFMSSILSGDKTGRLLKYEKTT-KEVTILL--------------QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~--------------~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                                 .|.|..++.+. +......              .....|+.+.++||+++||+++.+.++|++|+.+..
T Consensus       108 -----------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~  176 (345)
T PF10282_consen  108 -----------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD  176 (345)
T ss_dssp             -----------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred             -----------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence                       66666665543 5443321              123557899999999999999999999999999754


Q ss_pred             C--CCcceeee-eCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          185 N--SGKQDVFA-ELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       185 ~--~~~~~~~~-~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      .  +.....+. .....|+.++++++|+ +||.+...+.
T Consensus       177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~  215 (345)
T PF10282_consen  177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT  215 (345)
T ss_dssp             S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence            2  22211121 1235799999999985 7777665555

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=5.9e-10  Score=94.28  Aligned_cols=158  Identities=14%  Similarity=0.208  Sum_probs=106.1

Q ss_pred             ccccceeceEEEeCCCCcEEEEECC--C-c--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAY--L-G--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ  117 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~--~-g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~  117 (310)
                      ....+.|.-|+++++...||++...  . +  .+++|+++|+++.+-..  ..+...|..+++|++|+++++++.+    
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--~~~g~~p~yvsvd~~g~~vf~AnY~----  109 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--TLPGSPPCYVSVDEDGRFVFVANYH----  109 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--ccCCCCCeEEEECCCCCEEEEEEcc----
Confidence            3344788999999955589999876  2 3  56778888988765433  2234456899999999978888754    


Q ss_pred             hhhhhhhhhcCCCCceEEEEeC-CCCeEEEE----ecCC---------cccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          118 RRQFMSSILSGDKTGRLLKYEK-TTKEVTIL----LQGL---------AFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~-~~~~~~~~----~~~~---------~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                                   .|.|.++-. +.|.....    ....         +.++-..++||+++|++++-+.++|+.|+.+.
T Consensus       110 -------------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d  176 (346)
T COG2706         110 -------------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD  176 (346)
T ss_pred             -------------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence                         455544433 12433321    1111         12456789999999999999999999999985


Q ss_pred             CCCCcceeee-eCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          184 PNSGKQDVFA-ELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       184 ~~~~~~~~~~-~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      +.+....... .....|+.|++.++|. .|+.+--++.
T Consensus       177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st  214 (346)
T COG2706         177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST  214 (346)
T ss_pred             CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE
Confidence            5443333221 2235799999999997 4555444444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.43  E-value=5.5e-10  Score=98.52  Aligned_cols=153  Identities=10%  Similarity=0.059  Sum_probs=100.5

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCC-CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPE-GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      +.|..|+++++...||++... .+|..++.+ +++++......   ....|..|+++|+|+++|++...           
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~-----------  100 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSPTHISTDHQGRFLFSASYN-----------  100 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCceEEEECCCCCEEEEEEcC-----------
Confidence            568889999944458888765 457655554 45554332221   11258899999999988888743           


Q ss_pred             hhcCCCCceEEEEeCCC-CeE-EE--EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcc--eeee-eCC
Q 046018          125 ILSGDKTGRLLKYEKTT-KEV-TI--LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQ--DVFA-ELP  196 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~-~~~-~~--~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~--~~~~-~~~  196 (310)
                            .+.|..|+.++ +.. +.  .......|.+++++||++++|+++...+.|.+|+.+.. .....  .... ...
T Consensus       101 ------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g  174 (330)
T PRK11028        101 ------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG  174 (330)
T ss_pred             ------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC
Confidence                  56777776642 221 11  12334568999999999999999999999999998742 11110  1111 123


Q ss_pred             CCCCeeEECCCCC-EEEEEecCCc
Q 046018          197 GFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       197 ~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ..|+.++++++|+ +|+++...+.
T Consensus       175 ~~p~~~~~~pdg~~lyv~~~~~~~  198 (330)
T PRK11028        175 AGPRHMVFHPNQQYAYCVNELNSS  198 (330)
T ss_pred             CCCceEEECCCCCEEEEEecCCCE
Confidence            4689999999996 6666654554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=1.6e-10  Score=99.45  Aligned_cols=215  Identities=15%  Similarity=0.149  Sum_probs=139.7

Q ss_pred             eeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      -..|..++++.+.||+++..+ .|.++++.+++.+.+..     +...++.+.++..|. |+++.               
T Consensus        26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-----p~~~~~~~~~d~~g~-Lv~~~---------------   84 (307)
T COG3386          26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-----PGGFSSGALIDAGGR-LIACE---------------   84 (307)
T ss_pred             cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-----CCCcccceeecCCCe-EEEEc---------------
Confidence            445777888677799999885 49999998887655532     223477788888887 88775               


Q ss_pred             cCCCCceEEEEeCCCCeE-EEEec-----CCcccceEEEecCCCeEEEEecC-----------CceEEEEEccCCCCCcc
Q 046018          127 SGDKTGRLLKYEKTTKEV-TILLQ-----GLAFANGVALSRDRTFILIAETS-----------NCRILRFWLHGPNSGKQ  189 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~-~~~~~-----~~~~~~gi~~~~d~~~lyv~~~~-----------~~~i~~~~~~~~~~~~~  189 (310)
                           ..+++++++++.. +.+..     ....+|...++|||+ +|++++.           .++||++++.+.   ..
T Consensus        85 -----~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~---~~  155 (307)
T COG3386          85 -----HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGG---VV  155 (307)
T ss_pred             -----cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCC---EE
Confidence                 2356666665555 43332     235689999999998 8998776           247999987543   22


Q ss_pred             eeeeeCCCCCCeeEECCCC-CEEEEEecCCccceeeeeecccc---ccE-----EeeccchhhhhcccccCCCCc-----
Q 046018          190 DVFAELPGFPDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWL---GKT-----LLKLPLSFRQLHSLLVGGKPH-----  255 (310)
Q Consensus       190 ~~~~~~~~~p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~---g~~-----~~~~~~~~~~~~~~~~~~~~~-----  255 (310)
                      +++.+.-..|++|++++|| .+|+++...+.     +.+++..   +..     ..........|.+++......     
T Consensus       156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~-----i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a  230 (307)
T COG3386         156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANR-----IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA  230 (307)
T ss_pred             EeecCcEEecCceEECCCCCEEEEEeCCCCe-----EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence            3333323468999999999 79999987665     4444322   222     111122223444444332222     


Q ss_pred             ----eEEEEECCCCCEEEEEEcCCCCeecceeEEEEe---CCEEEEecCCCCe
Q 046018          256 ----ATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK---DGQLWMGSVLMPF  301 (310)
Q Consensus       256 ----~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~l~vgs~~~~~  301 (310)
                          ..+.+++|+|+.+..+..|.    ..++.++..   .++||+.+.....
T Consensus       231 ~~~g~~v~~~~pdG~l~~~i~lP~----~~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         231 VWGGGRVVRFNPDGKLLGEIKLPV----KRPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             ccCCceEEEECCCCcEEEEEECCC----CCCccceEeCCCcCEEEEEecCCCC
Confidence                26778899999998887764    234555444   4899999987744

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=9.6e-11  Score=99.01  Aligned_cols=155  Identities=16%  Similarity=0.207  Sum_probs=110.2

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      +++|..-++|+...|++.+.+ ++|+.++.+.++++..... .-.+...|++|++.|+|+.+|+...-            
T Consensus       145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~EL------------  211 (346)
T COG2706         145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVNEL------------  211 (346)
T ss_pred             CccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEecc------------
Confidence            456777788934478888887 5688887778877654222 22456789999999999999988742            


Q ss_pred             hcCCCCce--EEEEeCCCCeEEEEec------C---CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee
Q 046018          126 LSGDKTGR--LLKYEKTTKEVTILLQ------G---LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE  194 (310)
Q Consensus       126 ~~~~~~g~--v~~~d~~~~~~~~~~~------~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (310)
                           +++  ++.|++..++++.+..      +   ......|.+++||++||+++.+.+.|+.|..+.. .+....+..
T Consensus       212 -----~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~L~~~~~  285 (346)
T COG2706         212 -----NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-GGKLELVGI  285 (346)
T ss_pred             -----CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-CCEEEEEEE
Confidence                 444  6667776677776542      1   2234579999999999999999999999977632 122333322


Q ss_pred             --CC-CCCCeeEECCCCCEEEEEecCCcc
Q 046018          195 --LP-GFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       195 --~~-~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                        .. ..|+.+.+++.|++.++.++....
T Consensus       286 ~~teg~~PR~F~i~~~g~~Liaa~q~sd~  314 (346)
T COG2706         286 TPTEGQFPRDFNINPSGRFLIAANQKSDN  314 (346)
T ss_pred             eccCCcCCccceeCCCCCEEEEEccCCCc
Confidence              22 359999999999988887766543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.31  E-value=7.5e-09  Score=89.33  Aligned_cols=186  Identities=15%  Similarity=0.103  Sum_probs=111.8

Q ss_pred             ccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCC-ceEEEeCCCCeEE
Q 046018            4 TGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYL-GFQVVGPEGGLAT   81 (310)
Q Consensus         4 ~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~~   81 (310)
                      ++..++.+..|+.+...-+.                  .......+.++++++ +|+ +|++.... .|..+|..+++..
T Consensus         6 s~~~d~~v~~~d~~t~~~~~------------------~~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~   66 (300)
T TIGR03866         6 SNEKDNTISVIDTATLEVTR------------------TFPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVI   66 (300)
T ss_pred             EecCCCEEEEEECCCCceEE------------------EEECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEE
Confidence            45567788888875542110                  011123467899998 554 67776554 4888898887654


Q ss_pred             EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec
Q 046018           82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR  161 (310)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~  161 (310)
                      .....     ...+..++++++|+.+|++...                 .+.+..||..+++..........+.+++++|
T Consensus        67 ~~~~~-----~~~~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  124 (300)
T TIGR03866        67 GTLPS-----GPDPELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSP  124 (300)
T ss_pred             EeccC-----CCCccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECC
Confidence            32221     1235678999999967776532                 5689999998765433333334578999999


Q ss_pred             CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEE-EEEecCCccceeeeeec-cccccEEeec
Q 046018          162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFW-VALHAKKGLFGKLILLN-SWLGKTLLKL  238 (310)
Q Consensus       162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~-va~~~~~~~~~~~i~~~-~~~g~~~~~~  238 (310)
                      |++.++++......+..++..+..   ..........|..++++++|..+ ++....+.     +..+ ...++.+..+
T Consensus       125 dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-----v~i~d~~~~~~~~~~  195 (300)
T TIGR03866       125 DGKIVVNTSETTNMAHFIDTKTYE---IVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-----VSVIDVATRKVIKKI  195 (300)
T ss_pred             CCCEEEEEecCCCeEEEEeCCCCe---EEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-----EEEEEcCcceeeeee
Confidence            999777665444566777765321   11111123457789999999754 55433443     3333 3445544443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.28  E-value=8.6e-09  Score=90.90  Aligned_cols=153  Identities=12%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCC-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEG-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      +.|.+++++++...||++.... .|..++.+. +..........  ....|..++++|+|+++|+++..           
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~-----------  146 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLK-----------  146 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCC-----------
Confidence            5788999999444688887654 366665542 22211111111  12358889999999988888854           


Q ss_pred             hhcCCCCceEEEEeCCC-CeEEE------EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC--CCCcceeeeeC
Q 046018          125 ILSGDKTGRLLKYEKTT-KEVTI------LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP--NSGKQDVFAEL  195 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~-~~~~~------~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~--~~~~~~~~~~~  195 (310)
                            .+.|..||.++ +.+..      .......|.+++++||++++|+++..++.|.+|+.+..  .......+...
T Consensus       147 ------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~  220 (330)
T PRK11028        147 ------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM  220 (330)
T ss_pred             ------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence                  67788888754 33321      11234568999999999999999988999999998732  11111111111


Q ss_pred             C------CCCCeeEECCCCC-EEEEEecCC
Q 046018          196 P------GFPDNVRSNSNGE-FWVALHAKK  218 (310)
Q Consensus       196 ~------~~p~~i~~d~~G~-l~va~~~~~  218 (310)
                      |      ..|..+.++++|+ +|+++...+
T Consensus       221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~  250 (330)
T PRK11028        221 PADFSDTRWAADIHITPDGRHLYACDRTAS  250 (330)
T ss_pred             CCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence            1      2344688999996 777654444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.19  E-value=6.7e-08  Score=83.39  Aligned_cols=133  Identities=14%  Similarity=0.148  Sum_probs=92.7

Q ss_pred             CcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           59 GDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        59 g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      +++|++....+ |.++|.++++.......     ...+..++++++|+.+|++...                 .+.|..|
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-----~~~~~~l~~~~dg~~l~~~~~~-----------------~~~v~~~   58 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-----GQRPRGITLSKDGKLLYVCASD-----------------SDTIQVI   58 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEEC-----CCCCCceEECCCCCEEEEEECC-----------------CCeEEEE
Confidence            35777776654 88889887765433321     1246789999999867777632                 6779999


Q ss_pred             eCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCCEEEEEe
Q 046018          138 EKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       138 d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~  215 (310)
                      |.++++..........+..++++|+++.+|++....+.|.+||+...     ..+..  ....|.+++++++|.+++...
T Consensus        59 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-----~~~~~~~~~~~~~~~~~~~dg~~l~~~~  133 (300)
T TIGR03866        59 DLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETR-----KVLAEIPVGVEPEGMAVSPDGKIVVNTS  133 (300)
T ss_pred             ECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC-----eEEeEeeCCCCcceEEECCCCCEEEEEe
Confidence            99877665433334457789999999988888777789999998642     11222  223578899999998877665


Q ss_pred             cCC
Q 046018          216 AKK  218 (310)
Q Consensus       216 ~~~  218 (310)
                      ...
T Consensus       134 ~~~  136 (300)
T TIGR03866       134 ETT  136 (300)
T ss_pred             cCC
Confidence            543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.19  E-value=2.3e-08  Score=85.88  Aligned_cols=154  Identities=19%  Similarity=0.257  Sum_probs=101.1

Q ss_pred             eeceEEEeCCCCcEEEEECCC-------------ceEEEeCCCCeEEEEEeecC--CccccCCcceEEeCCC-----CEE
Q 046018           48 RPLGIRFDKKTGDLYIADAYL-------------GFQVVGPEGGLATQLVTEAA--GQPLRFTNDLDIDEHK-----GVI  107 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~-------------gi~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g-----~~l  107 (310)
                      .+.++.+|+ .|+|||.|.+.             .|+.+|..+.++.+....+.  ..+..+.+++++|...     .++
T Consensus         2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence            356799999 99999999751             38999999988755444332  2245578999999731     359


Q ss_pred             EEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc--------------------ccceEEEec---CCC
Q 046018          108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA--------------------FANGVALSR---DRT  164 (310)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--------------------~~~gi~~~~---d~~  164 (310)
                      |++|..                 .+.+..||..+++..++.....                    ...||+++|   |++
T Consensus        81 YItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r  143 (287)
T PF03022_consen   81 YITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGR  143 (287)
T ss_dssp             EEEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-
T ss_pred             EEeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCcc
Confidence            999965                 4579999998887766542211                    134788876   888


Q ss_pred             eEEEEecCCceEEEEEcc---CCCCCc-------ceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          165 FILIAETSNCRILRFWLH---GPNSGK-------QDVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       165 ~lyv~~~~~~~i~~~~~~---~~~~~~-------~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +||+....+..+|++..+   ......       .+.+...+...+++++|++|+||++....+.
T Consensus       144 ~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a  208 (287)
T PF03022_consen  144 WLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA  208 (287)
T ss_dssp             EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE
T ss_pred             EEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe
Confidence            999997777889999764   111111       1222222335689999999999999988764

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.13  E-value=6.2e-08  Score=86.94  Aligned_cols=151  Identities=13%  Similarity=0.174  Sum_probs=112.3

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..|.++++++...++|+.+.. ..|..+|..+.+.......     ...|.+++++++++.+|+++...           
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----G~~P~~~~~~~~~~~vYV~n~~~-----------  137 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----GLGPVGLAVDPDGKYVYVANAGN-----------  137 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----ccCCceEEECCCCCEEEEEeccc-----------
Confidence            578899999855569999877 4699999766654433222     22799999999998899999641           


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce--eeeeCCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD--VFAELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~p~~i~  203 (310)
                          ..+.+..+|.++.+..........|.+++++|+++.+|+++..++.|..++.++.......  ........|.+++
T Consensus       138 ----~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~  213 (381)
T COG3391         138 ----GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIA  213 (381)
T ss_pred             ----CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEE
Confidence                2678999999887765544444468999999999999999999999999997654222100  0112335789999


Q ss_pred             ECCCCC-EEEEEecC
Q 046018          204 SNSNGE-FWVALHAK  217 (310)
Q Consensus       204 ~d~~G~-l~va~~~~  217 (310)
                      ++++|+ +|++....
T Consensus       214 v~~~g~~~yV~~~~~  228 (381)
T COG3391         214 VDPDGNRVYVANDGS  228 (381)
T ss_pred             ECCCCCEEEEEeccC
Confidence            999997 88887765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.11  E-value=5.8e-09  Score=93.19  Aligned_cols=142  Identities=19%  Similarity=0.263  Sum_probs=97.1

Q ss_pred             cceeceEEEeCCCCcEEEEEC-----------C-C-ceEEEeCC--CCeE---EEEEeecCCccccCCcceEEeCCCCEE
Q 046018           46 CGRPLGIRFDKKTGDLYIADA-----------Y-L-GFQVVGPE--GGLA---TQLVTEAAGQPLRFTNDLDIDEHKGVI  107 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~-----------~-~-gi~~~d~~--~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~~l  107 (310)
                      ...|.+|++|+ +|+|||++.           . . .|.+++..  +++.   +.+++     .+..|++|++.++|  +
T Consensus        13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----~l~~p~Gi~~~~~G--l   84 (367)
T TIGR02604        13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----ELSMVTGLAVAVGG--V   84 (367)
T ss_pred             cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----CCCCccceeEecCC--E
Confidence            37899999999 999999974           1 2 47777432  2332   33332     24478999999887  9


Q ss_pred             EEEeCCCchhhhhhhhhhhcCCCCceEEEE-eCCC-----CeEEEEecC--------CcccceEEEecCCCeEEEEecC-
Q 046018          108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKY-EKTT-----KEVTILLQG--------LAFANGVALSRDRTFILIAETS-  172 (310)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~~-----~~~~~~~~~--------~~~~~gi~~~~d~~~lyv~~~~-  172 (310)
                      ||+.                   ...|+++ +.+.     ++.+++...        ...++++++.|||+ ||++... 
T Consensus        85 yV~~-------------------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~  144 (367)
T TIGR02604        85 YVAT-------------------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNT  144 (367)
T ss_pred             EEeC-------------------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccC
Confidence            9986                   4457777 3321     133444332        23378999999997 9997652 


Q ss_pred             ------------------CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018          173 ------------------NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       173 ------------------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                                        .+.|++++++++   ..+.++.--..|.++++|++|++|++++...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       145 LASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             CCceeccCCCccCcccccCceEEEEecCCC---eEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence                              157999998864   2455554335689999999999999988554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.01  E-value=1.4e-06  Score=76.35  Aligned_cols=85  Identities=9%  Similarity=-0.031  Sum_probs=55.7

Q ss_pred             ccccccccCCCCCccccccceeceEEEeCCCCcEEEEEC---------C-CceEEEeCCCCeEEEEEeecCCc---cccC
Q 046018           28 TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADA---------Y-LGFQVVGPEGGLATQLVTEAAGQ---PLRF   94 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~---------~-~gi~~~d~~~~~~~~~~~~~~~~---~~~~   94 (310)
                      .+..+|.++.+..........|+++ ++++...||++..         . +.|..+|..+.+...-+..+..+   ....
T Consensus        28 ~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~  106 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY  106 (352)
T ss_pred             eEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence            3444554442212223344688897 8996668999998         4 34899999988764333332221   1456


Q ss_pred             CcceEEeCCCCEEEEEeCC
Q 046018           95 TNDLDIDEHKGVIYFTDSS  113 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~  113 (310)
                      ++.+++++||++|||.+..
T Consensus       107 ~~~~~ls~dgk~l~V~n~~  125 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFS  125 (352)
T ss_pred             cceEEECCCCCEEEEecCC
Confidence            7899999999999998844

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=7.6e-08  Score=86.37  Aligned_cols=150  Identities=18%  Similarity=0.214  Sum_probs=108.7

Q ss_pred             ceeceEEEeCCCCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ..|++++++++.+.+||++..   ..+.++|..++++...  .+.+   ..|.+++++|+|+.+|+++..          
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--~~vG---~~P~~~a~~p~g~~vyv~~~~----------  180 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--IPVG---NTPTGVAVDPDGNKVYVTNSD----------  180 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE--EecC---CCcceEEECCCCCeEEEEecC----------
Confidence            489999999966699999995   3499999998876544  2122   257899999999999999854          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEE-----EecCCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTI-----LLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELP  196 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~-----~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~  196 (310)
                             .+.|..+|.++.....     .......|.++++++|++.+|+++..+  +.+.++|................
T Consensus       181 -------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~  253 (381)
T COG3391         181 -------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG  253 (381)
T ss_pred             -------CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC
Confidence                   7889999987654442     123456789999999999999998887  69999887643221111111122


Q ss_pred             CCCCeeEECCCCC-EEEEEecCCc
Q 046018          197 GFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       197 ~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                       .|.++.++++|. +|++....+.
T Consensus       254 -~~~~v~~~p~g~~~yv~~~~~~~  276 (381)
T COG3391         254 -APRGVAVDPAGKAAYVANSQGGT  276 (381)
T ss_pred             -CCCceeECCCCCEEEEEecCCCe
Confidence             688999999996 5555455444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.96  E-value=1.9e-07  Score=81.81  Aligned_cols=121  Identities=12%  Similarity=0.030  Sum_probs=86.1

Q ss_pred             CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec---------CC
Q 046018          103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET---------SN  173 (310)
Q Consensus       103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~---------~~  173 (310)
                      +++++||.+....             ...++|+.+|.++.++.-.......|+++ ++||++.||++++         .+
T Consensus        11 ~~~~v~V~d~~~~-------------~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~   76 (352)
T TIGR02658        11 DARRVYVLDPGHF-------------AATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRT   76 (352)
T ss_pred             CCCEEEEECCccc-------------ccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCC
Confidence            3446999986421             12488999999988876655666789997 9999999999999         88


Q ss_pred             ceEEEEEccCCCCCcceeee-eC-----CCCCCeeEECCCCC-EEEEEec-CCccceeeeeeccccccEEeeccchh
Q 046018          174 CRILRFWLHGPNSGKQDVFA-EL-----PGFPDNVRSNSNGE-FWVALHA-KKGLFGKLILLNSWLGKTLLKLPLSF  242 (310)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~-~~-----~~~p~~i~~d~~G~-l~va~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~  242 (310)
                      +.|.+||..+.+... ++.. ..     ...|..+++++||+ |||++.. ...+    ...+...++.+..++.|.
T Consensus        77 d~V~v~D~~t~~~~~-~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V----~VvD~~~~kvv~ei~vp~  148 (352)
T TIGR02658        77 DYVEVIDPQTHLPIA-DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV----GVVDLEGKAFVRMMDVPD  148 (352)
T ss_pred             CEEEEEECccCcEEe-EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE----EEEECCCCcEEEEEeCCC
Confidence            999999987532110 1110 01     12355899999995 8888866 4543    455678889999888864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.91  E-value=2.3e-08  Score=68.71  Aligned_cols=84  Identities=24%  Similarity=0.365  Sum_probs=66.0

Q ss_pred             cceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCce
Q 046018           96 NDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCR  175 (310)
Q Consensus        96 ~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~  175 (310)
                      |+|+.-...+ +|+|+.+..-......++.+.+...+.|..||++  +.+.+..++..||||+++||++.|||++...+.
T Consensus         1 NDIvavG~~s-Fy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~   77 (86)
T PF01731_consen    1 NDIVAVGPDS-FYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHS   77 (86)
T ss_pred             CCEEEECcCc-EEEECchhhCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence            3555444445 9999876433344556677777788889999984  577788899999999999999999999999999


Q ss_pred             EEEEEcc
Q 046018          176 ILRFWLH  182 (310)
Q Consensus       176 i~~~~~~  182 (310)
                      |++|...
T Consensus        78 I~vy~~~   84 (86)
T PF01731_consen   78 IHVYKRH   84 (86)
T ss_pred             EEEEEec
Confidence            9999754

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.87  E-value=9.3e-08  Score=85.77  Aligned_cols=251  Identities=14%  Similarity=0.173  Sum_probs=132.7

Q ss_pred             eEEEEEeccccccccCCCC---CccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcc
Q 046018           21 WTEFAVTTSQRKECVRPFA---PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTND   97 (310)
Q Consensus        21 W~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~   97 (310)
                      |...+..++...+.-+...   .....+......+.+|. .|+|||++. +|++++|..+++.-+....   +....++.
T Consensus       136 w~~~~~~gV~~~d~lg~~~v~~~r~ll~d~~V~aLv~D~-~g~lWvgT~-dGL~~fd~~~gkalql~s~---~~dk~I~a  210 (671)
T COG3292         136 WLHASVIGVDSADALGREAVKDVRPLLKDTPVVALVFDA-NGRLWVGTP-DGLSYFDAGRGKALQLASP---PLDKAINA  210 (671)
T ss_pred             hhccccCCccccccchhhhccCccccccCccceeeeeec-cCcEEEecC-CcceEEccccceEEEcCCC---cchhhHHH
Confidence            6655555555544322000   11122334455789998 999999955 4899999998876444322   11146788


Q ss_pred             eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccce----EEEecCCCeEEEEecCC
Q 046018           98 LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANG----VALSRDRTFILIAETSN  173 (310)
Q Consensus        98 i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~g----i~~~~d~~~lyv~~~~~  173 (310)
                      ++.|..|+ +||++                   +..++++++++-++.-.  ....|.+    +.-+.+|. +|+...  
T Consensus       211 l~~d~qg~-LWVGT-------------------dqGv~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~-lWiGTe--  265 (671)
T COG3292         211 LIADVQGR-LWVGT-------------------DQGVYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE-LWIGTE--  265 (671)
T ss_pred             HHHHhcCc-EEEEe-------------------ccceEEEchhhcccccc--CCCCcchheeeeecccCCC-EEEeec--
Confidence            99999999 99998                   44588888875333322  2233433    22233455 788632  


Q ss_pred             ceEEEEEccCCCCCcceeeee--CC-CCCCeeEECCCCCEEEEEecCCcc-----ceeeeeeccccccEEeeccc-hhhh
Q 046018          174 CRILRFWLHGPNSGKQDVFAE--LP-GFPDNVRSNSNGEFWVALHAKKGL-----FGKLILLNSWLGKTLLKLPL-SFRQ  244 (310)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~--~~-~~p~~i~~d~~G~l~va~~~~~~~-----~~~~i~~~~~~g~~~~~~~~-~~~~  244 (310)
                      +.++++....+...-  ....  .+ .....+..|.+|++|++++.+.-.     +..+....+.+|...+.... +...
T Consensus       266 nGl~r~~l~rq~Lq~--~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll  343 (671)
T COG3292         266 NGLWRTRLPRQGLQI--PLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALL  343 (671)
T ss_pred             ccceeEecCCCCccc--cccccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhc
Confidence            456666544221110  1111  11 123678999999999999875421     00000011111221111100 0000


Q ss_pred             hcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEE-EeCCEEEEecCCCCeEEEecc
Q 046018          245 LHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVE-EKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      .-..++......+.+.-+..|.++.....-.|   .+++.++ ...+++|+|+. +++|.+++.
T Consensus       344 ~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg---~nit~~~~d~~g~lWlgs~-q~GLsrl~n  403 (671)
T COG3292         344 SWGVRQLNSIGELMVANGSTGELVRSVHQLRG---MNITTTLEDSRGRLWLGSM-QNGLSRLDN  403 (671)
T ss_pred             ccceeeccccceEEEecCCCCcEEEEeeeccc---cccchhhhccCCcEEEEec-ccchhhhcc
Confidence            00112222222333333455666666544334   2355444 45899999998 667777653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.87  E-value=1.2e-06  Score=80.84  Aligned_cols=173  Identities=13%  Similarity=0.183  Sum_probs=115.6

Q ss_pred             ccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEE
Q 046018            4 TGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLAT   81 (310)
Q Consensus         4 ~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~   81 (310)
                      |+..|+.|..|+.-+.. .++                  +........++.+.. .|+..++..-+| |..+|..-.+--
T Consensus       367 TG~eDgKVKvWn~~SgfC~vT------------------FteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQSGFCFVT------------------FTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNF  427 (893)
T ss_pred             eccCCCcEEEEeccCceEEEE------------------eccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccccee
Confidence            55666677777765542 332                  222336677899988 777777766655 777787654321


Q ss_pred             EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEe
Q 046018           82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALS  160 (310)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~  160 (310)
                      +....   +.-.....+++||.|. +.++....                .-.|+.|+.++|+..-+..+...| .+++++
T Consensus       428 RTft~---P~p~QfscvavD~sGe-lV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~  487 (893)
T KOG0291|consen  428 RTFTS---PEPIQFSCVAVDPSGE-LVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFS  487 (893)
T ss_pred             eeecC---CCceeeeEEEEcCCCC-EEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence            12222   2223567899999999 88776431                346999999999887766666666 789999


Q ss_pred             cCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC-CEEEEEecCC
Q 046018          161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG-EFWVALHAKK  218 (310)
Q Consensus       161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~va~~~~~  218 (310)
                      |++. ++++.++..+|.+|+.-... +..+.+. .....-++.+.|+| .|-|++..+.
T Consensus       488 ~~~~-~LaS~SWDkTVRiW~if~s~-~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  488 PDGS-LLASGSWDKTVRIWDIFSSS-GTVETLE-IRSDVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             cccC-eEEeccccceEEEEEeeccC-ceeeeEe-eccceeEEEEcCCCCeEEEEEecce
Confidence            9999 67778999999999986431 1122221 11223578889999 6888887765

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.85  E-value=1.4e-07  Score=87.73  Aligned_cols=177  Identities=18%  Similarity=0.260  Sum_probs=122.6

Q ss_pred             eEEEEEeccccccccCCCCC-ccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcce
Q 046018           21 WTEFAVTTSQRKECVRPFAP-DIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDL   98 (310)
Q Consensus        21 W~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i   98 (310)
                      |+|.++..|.+-+..+-..+ .+......|.|||+|....++|.++.- +.|-+...++...+.+...    .+..|++|
T Consensus      1041 WtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~i 1116 (1289)
T KOG1214|consen 1041 WTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAI 1116 (1289)
T ss_pred             EeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEee----cccCcceE
Confidence            99999988888765442222 223345789999999867789999876 4444434444333333332    35679999


Q ss_pred             EEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE-ecCCcccceEEEecCCCeEEEEecCCceEE
Q 046018           99 DIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL-LQGLAFANGVALSRDRTFILIAETSNCRIL  177 (310)
Q Consensus        99 ~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~  177 (310)
                      ++|+-++.||.+++..               .+-.|-+.+.++...+++ .++..-|||+.|+|-.+.|.|++.+++++.
T Consensus      1117 v~D~~rgnLYwtDWnR---------------enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rle 1181 (1289)
T KOG1214|consen 1117 VVDPIRGNLYWTDWNR---------------ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLE 1181 (1289)
T ss_pred             EeecccCceeeccccc---------------cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCccee
Confidence            9998655599999542               133455556654434443 466788999999999998999999999999


Q ss_pred             EEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCcc
Q 046018          178 RFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                      ...+++.  +....+..+ .+|.++.-+.+. +|..+|..+.+
T Consensus      1182 C~~p~g~--gRR~i~~~L-qYPF~itsy~~~-fY~TDWk~n~v 1220 (1289)
T KOG1214|consen 1182 CTLPDGT--GRRVIQNNL-QYPFSITSYADH-FYHTDWKRNGV 1220 (1289)
T ss_pred             EecCCCC--cchhhhhcc-cCceeeeecccc-ceeeccccCce
Confidence            9988853  333333333 478899888766 99999987764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.84  E-value=6.1e-07  Score=72.62  Aligned_cols=191  Identities=13%  Similarity=0.097  Sum_probs=115.8

Q ss_pred             CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEE
Q 046018            2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLAT   81 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~   81 (310)
                      |||+..|+.++.|+....                  .-+..........-+.+.+..++|++++-.+.|..+|.......
T Consensus        98 MyTgseDgt~kIWdlR~~------------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   98 MYTGSEDGTVKIWDLRSL------------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             EEecCCCceEEEEeccCc------------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence            577777777777776442                  11222222234456888887889999987777999998876544


Q ss_pred             EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-Eec--CCcc----c
Q 046018           82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQ--GLAF----A  154 (310)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~--~~~~----~  154 (310)
                      .....   .....+..+++.+||. ..++..                 ..|+.|.|+.-++.... +.+  .+..    .
T Consensus       160 ~~liP---e~~~~i~sl~v~~dgs-ml~a~n-----------------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i  218 (311)
T KOG0315|consen  160 HELIP---EDDTSIQSLTVMPDGS-MLAAAN-----------------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHI  218 (311)
T ss_pred             cccCC---CCCcceeeEEEcCCCc-EEEEec-----------------CCccEEEEEccCCCccccceEhhheecccceE
Confidence            33221   2234678899999999 555542                 37889999875543222 111  1111    2


Q ss_pred             ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccc
Q 046018          155 NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLG  232 (310)
Q Consensus       155 ~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g  232 (310)
                      --..++||+++| ++.+.+..+.+|+.++- . ..+...+ -.+....-+|+.||...|.....+.     +... .+.+
T Consensus       219 l~C~lSPd~k~l-at~ssdktv~iwn~~~~-~-kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~-----~rlW~~~~~  290 (311)
T KOG0315|consen  219 LRCLLSPDVKYL-ATCSSDKTVKIWNTDDF-F-KLELVLTGHQRWVWDCAFSADGEYLVTASSDHT-----ARLWDLSAG  290 (311)
T ss_pred             EEEEECCCCcEE-EeecCCceEEEEecCCc-e-eeEEEeecCCceEEeeeeccCccEEEecCCCCc-----eeecccccC
Confidence            246789999954 45567789999998753 1 1121111 2245667889999987776655553     2332 3455


Q ss_pred             cEEeecc
Q 046018          233 KTLLKLP  239 (310)
Q Consensus       233 ~~~~~~~  239 (310)
                      +.+...+
T Consensus       291 k~v~qy~  297 (311)
T KOG0315|consen  291 KEVRQYQ  297 (311)
T ss_pred             ceeeecC
Confidence            5555443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.81  E-value=5.7e-07  Score=83.75  Aligned_cols=142  Identities=15%  Similarity=0.229  Sum_probs=104.8

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ..-+.||.+|=++..+|.++... .|.+-..++++-+.++..    .+..|.+||+|.-++.+|.+++..+         
T Consensus      1024 ~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~----~L~SPEGiAVDh~~Rn~ywtDS~lD--------- 1090 (1289)
T KOG1214|consen 1024 GSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS----GLISPEGIAVDHIRRNMYWTDSVLD--------- 1090 (1289)
T ss_pred             cceeeeeecccccceEEEeecCCCccccccccCCCCceeecc----cCCCccceeeeeccceeeeeccccc---------
Confidence            35677999997688899998874 588888887776666543    4568999999988888999996421         


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeee-CCCCCCe
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAE-LPGFPDN  201 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~  201 (310)
                            .=.|..+|-+ .+...+.+++..|.+|++++=++.|||++..  +..|..-+++|.   ..+++.+ .-+.|+|
T Consensus      1091 ------~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~---NrRilin~DigLPNG 1160 (1289)
T KOG1214|consen 1091 ------KIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGE---NRRILINTDIGLPNG 1160 (1289)
T ss_pred             ------hhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCc---cceEEeecccCCCCC
Confidence                  1135555543 2233356789999999999988889999864  458888888875   3455554 4478999


Q ss_pred             eEECCCCCE
Q 046018          202 VRSNSNGEF  210 (310)
Q Consensus       202 i~~d~~G~l  210 (310)
                      +.+|+..++
T Consensus      1161 Ltfdpfs~~ 1169 (1289)
T KOG1214|consen 1161 LTFDPFSKL 1169 (1289)
T ss_pred             ceeCcccce
Confidence            999998743

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=3.3e-06  Score=73.92  Aligned_cols=224  Identities=12%  Similarity=0.152  Sum_probs=126.3

Q ss_pred             EEEeCCCCc-EEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           52 IRFDKKTGD-LYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        52 l~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      .++.+ +|. ..++.... =++.+|..+++++++-. +.+.+........+++++++|.+..                  
T Consensus       263 a~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~-~~g~e~~~~e~FeVShd~~fia~~G------------------  322 (514)
T KOG2055|consen  263 AEFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKP-PYGVEEKSMERFEVSHDSNFIAIAG------------------  322 (514)
T ss_pred             eeecC-CCceEEEecccceEEEEeeccccccccccC-CCCcccchhheeEecCCCCeEEEcc------------------
Confidence            55666 665 44433333 37888999988776632 2333334567889999999444332                  


Q ss_pred             CCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC-CCCeeEECCCC
Q 046018          130 KTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG-FPDNVRSNSNG  208 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G  208 (310)
                      ..|.|+.+...++++-.-..-.+...+++|+.|++.||++ ...+.||+||+...  .....+.+..+ .-..+|.+.+|
T Consensus       323 ~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng  399 (514)
T KOG2055|consen  323 NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNG  399 (514)
T ss_pred             cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEE-cCCceEEEEecCCc--ceEEEEeecCccceeeeeecCCC
Confidence            3677888877666543322223346789999999988876 56679999998743  12233433221 22457888888


Q ss_pred             CEEEEEecCCccceeeeeeccccccEEeeccchhhhhccc-------ccCCCCc------------eEEEEECCCCCEEE
Q 046018          209 EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSL-------LVGGKPH------------ATAIKLSEKGEVLE  269 (310)
Q Consensus       209 ~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~------------~~~~~~d~~g~~~~  269 (310)
                      . |+|+.....+    |.+|+..-.+...-|.|.....++       .|....+            -.++-+ |.-.++.
T Consensus       400 ~-ylA~GS~~Gi----VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS~TVFs  473 (514)
T KOG2055|consen  400 S-YLATGSDSGI----VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PSCTVFS  473 (514)
T ss_pred             c-eEEeccCcce----EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cceeeec
Confidence            7 6666665554    666664444444444443332222       2221111            112222 2233444


Q ss_pred             EEEcCCCCeecceeEEEEe--CCEEEEecCCCCeEEEec
Q 046018          270 VLEDCEGKTLSFISEVEEK--DGQLWMGSVLMPFIGIYN  306 (310)
Q Consensus       270 ~~~~~~g~~~~~~~~~~~~--~g~l~vgs~~~~~i~~~~  306 (310)
                      +++.+ +.++..++.+...  .|-|-||+- ..++-.++
T Consensus       474 NfP~~-n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~k  510 (514)
T KOG2055|consen  474 NFPTS-NTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFK  510 (514)
T ss_pred             cCCCC-CCcccceEEEEecCCCceEEeecC-CCceeeEe
Confidence            44443 3445667766654  577777775 44454444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.75  E-value=5.7e-06  Score=73.81  Aligned_cols=135  Identities=12%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             CcEE-EEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE
Q 046018           59 GDLY-IADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK  136 (310)
Q Consensus        59 g~l~-v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~  136 (310)
                      ++|+ |+.... .|..+|.++.+.......  +.  .....+++++||+++|+++                  .+|.|..
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~--~~h~~~~~s~Dgr~~yv~~------------------rdg~vsv   62 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPT--GG--APHAGLKFSPDGRYLYVAN------------------RDGTVSV   62 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE---ST--TEEEEEE-TT-SSEEEEEE------------------TTSEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcC--CC--CceeEEEecCCCCEEEEEc------------------CCCeEEE
Confidence            3454 555554 489999988765333222  11  1134577899999999987                  3688999


Q ss_pred             EeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CC-----CCCCeeEECCCCC
Q 046018          137 YEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LP-----GFPDNVRSNSNGE  209 (310)
Q Consensus       137 ~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~-----~~p~~i~~d~~G~  209 (310)
                      +|+.+.+..........|.++++++||+++|+++...+.+.++|..+.+  ....+..  .+     ..+.+|..++...
T Consensus        63 iD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   63 IDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             EETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             EECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccccc--ceeecccccccccccCCCceeEEecCCCC
Confidence            9998887665455567799999999999999999899999999976421  1111111  11     1123566666666


Q ss_pred             EEEEEecC
Q 046018          210 FWVALHAK  217 (310)
Q Consensus       210 l~va~~~~  217 (310)
                      .|+.+...
T Consensus       141 ~fVv~lkd  148 (369)
T PF02239_consen  141 EFVVNLKD  148 (369)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEEcc
Confidence            66655543

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.74  E-value=3.8e-07  Score=76.16  Aligned_cols=190  Identities=10%  Similarity=0.072  Sum_probs=98.0

Q ss_pred             EEEEeCCCCC-e-EEEEEeccccccccCCCCCcccc-ccceeceEEEeCCCCcEEEEECCC-ceEEEeC--CCCeE----
Q 046018           11 ILKWQGDELG-W-TEFAVTTSQRKECVRPFAPDIEH-ICGRPLGIRFDKKTGDLYIADAYL-GFQVVGP--EGGLA----   80 (310)
Q Consensus        11 i~~~~~~~~~-W-~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~--~~~~~----   80 (310)
                      -..|+++.+. | |..+...+..++..++....+.. ..+-+.||+.-. ++.+.+++... .++.+..  .+..+    
T Consensus        26 GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~  104 (248)
T PF06977_consen   26 GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSLDRAD  104 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT--EEE
T ss_pred             ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccccccchhh
Confidence            3556776665 4 22233444455555422222211 236688999987 77777777654 4666644  33322    


Q ss_pred             -EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC--CCCeEEEEe--------c
Q 046018           81 -TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK--TTKEVTILL--------Q  149 (310)
Q Consensus        81 -~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~~~~~~~~~--------~  149 (310)
                       +.+.............+|+.|+.++++|++-..                .-..|+.++.  .........        .
T Consensus       105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen  105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             ceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeeccccccccccc
Confidence             111111111122346899999998879988532                2345777765  222222211        1


Q ss_pred             CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC------CCCCCeeEECCCCCEEEEEecC
Q 046018          150 GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL------PGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       150 ~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~p~~i~~d~~G~l~va~~~~  217 (310)
                      ....+.+++++|..+.||+-+..+++|..+|.+|.......+....      -..|.||++|++|+|||+.-.+
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN  242 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN  242 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence            2345889999999888999988999999999776422211111100      0258999999999999998543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.73  E-value=3.2e-06  Score=77.65  Aligned_cols=182  Identities=13%  Similarity=0.113  Sum_probs=105.2

Q ss_pred             EEEeCCCCC--eEEEEE--eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEE
Q 046018           12 LKWQGDELG--WTEFAV--TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLV   84 (310)
Q Consensus        12 ~~~~~~~~~--W~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~   84 (310)
                      +.|.++.+.  |+....  ..|+.+|..+.+...+....+.....+++++...|+++....   .|+.+|.++++.+++.
T Consensus       223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt  302 (448)
T PRK04792        223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT  302 (448)
T ss_pred             ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc
Confidence            467776654  443322  235555655433222322223334678898333476554332   3999999988766553


Q ss_pred             eecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCC
Q 046018           85 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRT  164 (310)
Q Consensus        85 ~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~  164 (310)
                      ..     .......+++|||++|+++...               .....|+.+|.++++.+.+..........+++|||+
T Consensus       303 ~~-----~~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~  362 (448)
T PRK04792        303 RH-----RAIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGR  362 (448)
T ss_pred             cC-----CCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCC
Confidence            21     1134567889999977776532               123469999998887776543333334578999999


Q ss_pred             eEEEEecCCc--eEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecC
Q 046018          165 FILIAETSNC--RILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAK  217 (310)
Q Consensus       165 ~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~  217 (310)
                      .|+++....+  .|++++++++.   ...+... .......++++|+ |+++...+
T Consensus       363 ~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~-~~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        363 SMIMVNRTNGKFNIARQDLETGA---MQVLTST-RLDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             EEEEEEecCCceEEEEEECCCCC---eEEccCC-CCCCCceECCCCCEEEEEEecC
Confidence            8888755433  67888877542   2222221 1112346888885 44444433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.72  E-value=3.1e-07  Score=82.11  Aligned_cols=133  Identities=17%  Similarity=0.225  Sum_probs=88.9

Q ss_pred             ccccceeceEEEeCCCCcEEEEECCCceEEE-eCCC-----CeEEEEEeecCCc---cccCCcceEEeCCCCEEEEEeCC
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAYLGFQVV-GPEG-----GLATQLVTEAAGQ---PLRFTNDLDIDEHKGVIYFTDSS  113 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~-----~~~~~~~~~~~~~---~~~~~~~i~~d~~g~~l~v~~~~  113 (310)
                      ......|.||++.+ +| |||+... .|+++ +.++     ++.+.+.......   ..+.++++++++||. ||++...
T Consensus        68 a~~l~~p~Gi~~~~-~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~  143 (367)
T TIGR02604        68 AEELSMVTGLAVAV-GG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGN  143 (367)
T ss_pred             ecCCCCccceeEec-CC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEeccc
Confidence            44457899999988 77 9998644 58877 4432     1334454433221   245689999999999 9998753


Q ss_pred             Cc--hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEE
Q 046018          114 TS--FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW  180 (310)
Q Consensus       114 ~~--~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~  180 (310)
                      ..  ................|.++++++++++.+++..++..|+|++++++|+ +|+++.......+++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~  211 (367)
T TIGR02604       144 TLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT  211 (367)
T ss_pred             CCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence            21  1000000000011234789999999999999888899999999999987 899887665555554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.72  E-value=4e-05  Score=65.24  Aligned_cols=158  Identities=11%  Similarity=0.045  Sum_probs=96.9

Q ss_pred             cceeceEEEeCCCCcEEEEECCCc--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLG--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ..+.|+++.++..+.+.+.-..-|  ..++|+.+++.......+  ..-++--+-++++||++||.+....         
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--~gRHFyGHg~fs~dG~~LytTEnd~---------   72 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--PGRHFYGHGVFSPDGRLLYTTENDY---------   72 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--CCCEEecCEEEcCCCCEEEEecccc---------
Confidence            357789999984444333333333  788999999876554432  2234556789999999777665331         


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEE---EecCCcccceEEEecCCCeEEEEecC-----------------CceEEEEEccC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTI---LLQGLAFANGVALSRDRTFILIAETS-----------------NCRILRFWLHG  183 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~~~gi~~~~d~~~lyv~~~~-----------------~~~i~~~~~~~  183 (310)
                          ....|.|-+||.. ..+++   +....-.|+.|.+.||++.|.|++-+                 ...|..+|...
T Consensus        73 ----~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s  147 (305)
T PF07433_consen   73 ----ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS  147 (305)
T ss_pred             ----CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence                2247789999987 33443   33456679999999999889998632                 12222232221


Q ss_pred             CCCCcceee-eeC-CCCCCeeEECCCCCEEEEEecCCc
Q 046018          184 PNSGKQDVF-AEL-PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       184 ~~~~~~~~~-~~~-~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +.+-....+ ... ...-.-++++++|.+|++....+.
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~  185 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD  185 (305)
T ss_pred             CceeeeeecCccccccceeeEEecCCCcEEEEEecCCC
Confidence            111000001 000 113456899999999999887654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.72  E-value=9.1e-06  Score=71.59  Aligned_cols=158  Identities=19%  Similarity=0.284  Sum_probs=94.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec--CCccccCCcceEEeCC----CCEEEEEeCCC--chhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA--AGQPLRFTNDLDIDEH----KGVIYFTDSST--SFQR  118 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~----g~~l~v~~~~~--~~~~  118 (310)
                      ..|.+|++.+ +|+|||++..+.|++++.++.....+....  .........+|+++|+    +. ||+.....  ..  
T Consensus         2 ~~P~~~a~~p-dG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~-lYv~~t~~~~~~--   77 (331)
T PF07995_consen    2 NNPRSMAFLP-DGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGY-LYVYYTNADEDG--   77 (331)
T ss_dssp             SSEEEEEEET-TSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-E-EEEEEEEE-TSS--
T ss_pred             CCceEEEEeC-CCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCE-EEEEEEcccCCC--
Confidence            4789999999 899999988666999885543313333321  1222345788999994    65 99887421  00  


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCC--e---EEEEecC-------CcccceEEEecCCCeEEEEec-------------CC
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTK--E---VTILLQG-------LAFANGVALSRDRTFILIAET-------------SN  173 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~--~---~~~~~~~-------~~~~~gi~~~~d~~~lyv~~~-------------~~  173 (310)
                               .....+|.++..+.+  .   .+.+...       .....+|++.|||. ||++--             ..
T Consensus        78 ---------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~  147 (331)
T PF07995_consen   78 ---------GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLR  147 (331)
T ss_dssp             ---------SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSST
T ss_pred             ---------CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCccccccccccc
Confidence                     011345777755433  2   2222211       22345799999994 999642             14


Q ss_pred             ceEEEEEccCCCC----------CcceeeeeCCCCCCeeEECCC-CCEEEEEecCC
Q 046018          174 CRILRFWLHGPNS----------GKQDVFAELPGFPDNVRSNSN-GEFWVALHAKK  218 (310)
Q Consensus       174 ~~i~~~~~~~~~~----------~~~~~~~~~~~~p~~i~~d~~-G~l~va~~~~~  218 (310)
                      ++|.++++++...          ...++++.--..|.++++|+. |+||++++...
T Consensus       148 G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~  203 (331)
T PF07995_consen  148 GKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD  203 (331)
T ss_dssp             TEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred             ceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence            6899999876410          122344432245788999999 99999997654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.69  E-value=5.1e-06  Score=74.12  Aligned_cols=161  Identities=14%  Similarity=0.196  Sum_probs=95.5

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      .+++++++...+|++...+.|..+|+.+.++..-+..     ...|.++++++||+++|+++..                
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~----------------   98 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----GGNPRGIAVSPDGKYVYVANYE----------------   98 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEEE----------------
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----CCCcceEEEcCCCCEEEEEecC----------------
Confidence            3567777333599997665699999998875332221     2368899999999988888743                


Q ss_pred             CCceEEEEeCCCCeEEEEecCC--------cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          130 KTGRLLKYEKTTKEVTILLQGL--------AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~--------~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                       .+.+..+|.++.+........        +...+|..++.+...+++....+.|+.+|....+. ...........|..
T Consensus        99 -~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~g~~~~D  176 (369)
T PF02239_consen   99 -PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKVTTIKVGRFPHD  176 (369)
T ss_dssp             -TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EEEEEEE--TTEEE
T ss_pred             -CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-cceeeecccccccc
Confidence             678999998775543322111        22357777887774555656779999998764311 11112224457889


Q ss_pred             eEECCCCCEE-EEEecCCccceeeeeeccccccEEee
Q 046018          202 VRSNSNGEFW-VALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       202 i~~d~~G~l~-va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                      ..+|++|+.+ ++.+..+.+    ...+..+++....
T Consensus       177 ~~~dpdgry~~va~~~sn~i----~viD~~~~k~v~~  209 (369)
T PF02239_consen  177 GGFDPDGRYFLVAANGSNKI----AVIDTKTGKLVAL  209 (369)
T ss_dssp             EEE-TTSSEEEEEEGGGTEE----EEEETTTTEEEEE
T ss_pred             cccCcccceeeeccccccee----EEEeeccceEEEE
Confidence            9999999755 555555542    3344555555443

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.69  E-value=1.7e-05  Score=66.27  Aligned_cols=201  Identities=13%  Similarity=0.167  Sum_probs=104.9

Q ss_pred             cccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           44 HICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        44 ~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      .....+.||+++++++.||++....+ |+.++.++..++++ ..   .....+.+|+...++. +++++..         
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i-~l---~g~~D~EgI~y~g~~~-~vl~~Er---------   84 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRI-PL---DGFGDYEGITYLGNGR-YVLSEER---------   84 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEE-E----SS-SSEEEEEE-STTE-EEEEETT---------
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEE-eC---CCCCCceeEEEECCCE-EEEEEcC---------
Confidence            33456889999997788999988754 99999876544433 22   1234688999988887 7777633         


Q ss_pred             hhhhcCCCCceEEEEeC--CCCeE-----EEEecC-----CcccceEEEecCCCeEEEEecCCc-eEEEEEccCCCCC-c
Q 046018          123 SSILSGDKTGRLLKYEK--TTKEV-----TILLQG-----LAFANGVALSRDRTFILIAETSNC-RILRFWLHGPNSG-K  188 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~--~~~~~-----~~~~~~-----~~~~~gi~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~-~  188 (310)
                              .+.++.++.  .+...     +.+.-+     ...-.|+++++.+++||++..... .|+.++....... .
T Consensus        85 --------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~  156 (248)
T PF06977_consen   85 --------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF  156 (248)
T ss_dssp             --------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred             --------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence                    566666654  22211     112111     122469999999888988754433 5666664111000 0


Q ss_pred             ce---eee-e--CCCCCCeeEECCC-CCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEE
Q 046018          189 QD---VFA-E--LPGFPDNVRSNSN-GEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKL  261 (310)
Q Consensus       189 ~~---~~~-~--~~~~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (310)
                      ..   .+. .  .-.-|.++++++. |+||+-...+.                                      +++.+
T Consensus       157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~--------------------------------------~l~~~  198 (248)
T PF06977_consen  157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR--------------------------------------LLLEL  198 (248)
T ss_dssp             EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT--------------------------------------EEEEE
T ss_pred             eccccccccccceeccccceEEcCCCCeEEEEECCCC--------------------------------------eEEEE
Confidence            00   011 0  1124677888765 46777654444                                      34566


Q ss_pred             CCCCCEEEEEEcCCC-----CeecceeEEEE-eCCEEEEecCCCCeEEEe
Q 046018          262 SEKGEVLEVLEDCEG-----KTLSFISEVEE-KDGQLWMGSVLMPFIGIY  305 (310)
Q Consensus       262 d~~g~~~~~~~~~~g-----~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~  305 (310)
                      |.+|+++..+....|     ..+.++-.++. .+|+||+.|= .+..++|
T Consensus       199 d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  199 DRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF  247 (248)
T ss_dssp             -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred             CCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence            777777766654433     22345555553 4678888774 5555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.63  E-value=5.8e-06  Score=75.74  Aligned_cols=157  Identities=13%  Similarity=0.084  Sum_probs=92.5

Q ss_pred             cccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC
Q 046018           29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK  104 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g  104 (310)
                      +..++..+.+...+....+....+++++ +| .|+++....   .|+.+|.++++.+++...   .  ......+++|||
T Consensus       230 l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~---~--~~~~~~~~spDG  303 (433)
T PRK04922        230 IYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH---F--GIDTEPTWAPDG  303 (433)
T ss_pred             EEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCeEECccC---C--CCccceEECCCC
Confidence            4445554432222222223334678888 55 465543332   399999998876654321   1  123467899999


Q ss_pred             CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEcc
Q 046018          105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLH  182 (310)
Q Consensus       105 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~  182 (310)
                      ++|+++...               .....|+.++.++++.+.+.........++++|||+.++++....  ..|++++++
T Consensus       304 ~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        304 KSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             CEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence            977776532               112359999988777766543333344689999999887764432  368899886


Q ss_pred             CCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018          183 GPNSGKQDVFAELPGFPDNVRSNSNGEF  210 (310)
Q Consensus       183 ~~~~~~~~~~~~~~~~p~~i~~d~~G~l  210 (310)
                      ++.   ...+... .......++++|+.
T Consensus       369 ~g~---~~~Lt~~-~~~~~p~~spdG~~  392 (433)
T PRK04922        369 TGS---VRTLTPG-SLDESPSFAPNGSM  392 (433)
T ss_pred             CCC---eEECCCC-CCCCCceECCCCCE
Confidence            542   2223221 12345688999973

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.62  E-value=2.6e-06  Score=78.84  Aligned_cols=148  Identities=11%  Similarity=0.019  Sum_probs=98.3

Q ss_pred             ccceeceEEEeCCCCcEEEEECC--Cc--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY--LG--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~--~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      ..+.|..++++++.+.+|++...  .+  +..++............        ..--+..++|++.|+.          
T Consensus       233 Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--------~~iea~vkdGK~~~V~----------  294 (635)
T PRK02888        233 VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--------ARIEEAVKAGKFKTIG----------  294 (635)
T ss_pred             eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--------HHHHHhhhCCCEEEEC----------
Confidence            44688899999955567777532  22  55555543332222211        0011344577766663          


Q ss_pred             hhhhhhcCCCCceEEEEeCCC-----CeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC------CCcc
Q 046018          121 FMSSILSGDKTGRLLKYEKTT-----KEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN------SGKQ  189 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~-----~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~------~~~~  189 (310)
                                .+.|..+|..+     .++.........|.|+.++|||+++|+++..+..|.++|....+      +...
T Consensus       295 ----------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        295 ----------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             ----------CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence                      45789999876     24444556778899999999999999999999999999986421      1111


Q ss_pred             e-eeee--CCCCCCeeEECCCCCEEEEEecCCcc
Q 046018          190 D-VFAE--LPGFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       190 ~-~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                      . +..+  +...|-..++|.+|+.|++.+-..++
T Consensus       365 ~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv  398 (635)
T PRK02888        365 DAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQI  398 (635)
T ss_pred             ceEEEeeccCCCcceEEECCCCCEEEeEeeccee
Confidence            1 2233  33468889999999999999887763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.59  E-value=4.6e-05  Score=64.13  Aligned_cols=147  Identities=14%  Similarity=0.120  Sum_probs=94.5

Q ss_pred             ceeceEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+.+++ +++++++.. .+.|..+|.++++.......    ....+..++++++++ ++++..             
T Consensus        94 ~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~l~~~~-------------  154 (289)
T cd00200          94 SYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGT-FVASSS-------------  154 (289)
T ss_pred             CcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEecc----CCCcEEEEEEcCcCC-EEEEEc-------------
Confidence            3567888988 677777766 44588888886554332221    122477899999988 555542             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          .++.+..||..+++...... .......++++|+++.++++. ..+.|.+|+......  ...+.........+++
T Consensus       155 ----~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~  227 (289)
T cd00200         155 ----QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKC--LGTLRGHENGVNSVAF  227 (289)
T ss_pred             ----CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCce--ecchhhcCCceEEEEE
Confidence                26779999987554433222 233567899999998677764 478999999864211  1112112234577899


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      ++++.++++....+.
T Consensus       228 ~~~~~~~~~~~~~~~  242 (289)
T cd00200         228 SPDGYLLASGSEDGT  242 (289)
T ss_pred             cCCCcEEEEEcCCCc
Confidence            998888877763443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.58  E-value=6.3e-06  Score=74.55  Aligned_cols=167  Identities=14%  Similarity=0.194  Sum_probs=99.6

Q ss_pred             cccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeec---CCccccCCcceEEeCCC------CEEEEEe
Q 046018           42 IEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEA---AGQPLRFTNDLDIDEHK------GVIYFTD  111 (310)
Q Consensus        42 ~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~g------~~l~v~~  111 (310)
                      +..-...|.+|++.+ +|+|||+... +.|.+++..++..+.+....   .......+.+|+++|+=      ++||++-
T Consensus        25 va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy  103 (454)
T TIGR03606        25 LLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY  103 (454)
T ss_pred             EECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence            344457899999999 8999999884 56999987765443332221   11123457899998762      3589885


Q ss_pred             CCCchhhhhhhhhhhcCCCCceEEEEeCCC--Ce---EEEEecCC-----cccceEEEecCCCeEEEEecC---------
Q 046018          112 SSTSFQRRQFMSSILSGDKTGRLLKYEKTT--KE---VTILLQGL-----AFANGVALSRDRTFILIAETS---------  172 (310)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~---~~~~~~~~-----~~~~gi~~~~d~~~lyv~~~~---------  172 (310)
                      +...-..        ......+|.++..+.  ..   .+.+....     .....|+|.|||+ ||++.-.         
T Consensus       104 t~~~~~~--------~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~  174 (454)
T TIGR03606       104 TYKNGDK--------ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANF  174 (454)
T ss_pred             eccCCCC--------CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccc
Confidence            3210000        000134677765431  11   12232222     2245799999997 9985322         


Q ss_pred             -----------------------CceEEEEEccCCCC-C-------cceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018          173 -----------------------NCRILRFWLHGPNS-G-------KQDVFAELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       173 -----------------------~~~i~~~~~~~~~~-~-------~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                                             .++|.|+++++.-. .       ..++++---..|.++++|++|+||++++...
T Consensus       175 ~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp~  251 (454)
T TIGR03606       175 FLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGPN  251 (454)
T ss_pred             cCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecCCC
Confidence                                   23688888876310 0       1123333225688999999999999988654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.57  E-value=0.00027  Score=59.35  Aligned_cols=168  Identities=15%  Similarity=0.101  Sum_probs=97.0

Q ss_pred             EEEEEeccccccccCCCCCcccccc-ceeceEEEeCCCC-cEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceE
Q 046018           22 TEFAVTTSQRKECVRPFAPDIEHIC-GRPLGIRFDKKTG-DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD   99 (310)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~~g-~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~   99 (310)
                      +......+..++............. .....+.+.+ ++ .|+++...+.|..++.++++.......    ....+..+.
T Consensus        26 ~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~  100 (289)
T cd00200          26 TGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTG----HTSYVSSVA  100 (289)
T ss_pred             EeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEec----cCCcEEEEE
Confidence            3333445555555442211111111 2334788888 55 555555555588888876533222221    112467888


Q ss_pred             EeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEE
Q 046018          100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILR  178 (310)
Q Consensus       100 ~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~  178 (310)
                      ++++++ ++++...                 .+.+..||..+++...... .......++++|+++. +++...++.|..
T Consensus       101 ~~~~~~-~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~i~i  161 (289)
T cd00200         101 FSPDGR-ILSSSSR-----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF-VASSSQDGTIKL  161 (289)
T ss_pred             EcCCCC-EEEEecC-----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE-EEEEcCCCcEEE
Confidence            999988 6666532                 6789999987655444333 2334678999999774 444455789999


Q ss_pred             EEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEe
Q 046018          179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALH  215 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~  215 (310)
                      |+......  ...+.........+.++++|+ ++++..
T Consensus       162 ~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         162 WDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             EEcccccc--ceeEecCccccceEEECCCcCEEEEecC
Confidence            99864311  122222223457889999984 555544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=1.8e-05  Score=72.53  Aligned_cols=175  Identities=10%  Similarity=0.086  Sum_probs=102.7

Q ss_pred             EEEeCCCCC--eEEEE--EeccccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEE
Q 046018           12 LKWQGDELG--WTEFA--VTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQL   83 (310)
Q Consensus        12 ~~~~~~~~~--W~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~   83 (310)
                      +.|.+|.+.  ++...  ...+..++..+.....+....+.....++++ +| .|+++....   .|+.+|.+++..+++
T Consensus       207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~L  285 (435)
T PRK05137        207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTTTRL  285 (435)
T ss_pred             eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCceEEc
Confidence            456665443  22211  1345555655433222222223445678888 66 455544332   399999998877655


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDR  163 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~  163 (310)
                      ...   .  ......+++|||++|+++...               .....|+.+|.+++..+.+...........++|||
T Consensus       286 t~~---~--~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG  345 (435)
T PRK05137        286 TDS---P--AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRG  345 (435)
T ss_pred             cCC---C--CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCC
Confidence            322   1  123457899999977776532               12346999999887777665433334557899999


Q ss_pred             CeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEE
Q 046018          164 TFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFW  211 (310)
Q Consensus       164 ~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~  211 (310)
                      +.|+++....  ..|++++++++.   ...+.. ........+++||+..
T Consensus       346 ~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~-~~~~~~p~~spDG~~i  391 (435)
T PRK05137        346 DLIAFTKQGGGQFSIGVMKPDGSG---ERILTS-GFLVEGPTWAPNGRVI  391 (435)
T ss_pred             CEEEEEEcCCCceEEEEEECCCCc---eEeccC-CCCCCCCeECCCCCEE
Confidence            9887765433  478888876432   222222 1234567889999643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.55  E-value=4e-05  Score=70.13  Aligned_cols=178  Identities=11%  Similarity=0.095  Sum_probs=103.6

Q ss_pred             EEEEeCCCCC--eEEEE--EeccccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEE
Q 046018           11 ILKWQGDELG--WTEFA--VTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQ   82 (310)
Q Consensus        11 i~~~~~~~~~--W~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~   82 (310)
                      -+.|.++...  ++...  ...+..++..+.+...+....+....+++++ +| .|+++....   .|+.+|.++++.++
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQ  281 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            4667776654  33221  1234444544432222222223344678999 55 466554432   39999999887765


Q ss_pred             EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC
Q 046018           83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD  162 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d  162 (310)
                      +...   .  ......+++|||++|+++....               ..-.||.++.+++..+.+..........+++||
T Consensus       282 lt~~---~--~~~~~~~wSPDG~~I~f~s~~~---------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD  341 (429)
T PRK03629        282 VTDG---R--SNNTEPTWFPDSQNLAYTSDQA---------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSD  341 (429)
T ss_pred             ccCC---C--CCcCceEECCCCCEEEEEeCCC---------------CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            5322   1  1345688999999776665321               133699999988777665433333456889999


Q ss_pred             CCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEE
Q 046018          163 RTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVA  213 (310)
Q Consensus       163 ~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va  213 (310)
                      |+.++++....  ..|++++++++.   ...+... ..-....+++||+..+.
T Consensus       342 G~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~-~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        342 GKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT-FLDETPSIAPNGTMVIY  390 (429)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC---eEEeCCC-CCCCCceECCCCCEEEE
Confidence            99887654433  468888877542   2333221 11235678899964443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=0.00012  Score=67.23  Aligned_cols=141  Identities=12%  Similarity=0.108  Sum_probs=87.8

Q ss_pred             eeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           48 RPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        48 ~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....++++ +| .|+.+....   .|+++|.++++.+++... .+    .....+++|||+.|+++.+.          
T Consensus       205 ~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g----~~~~~~~SpDG~~l~~~~s~----------  268 (433)
T PRK04922        205 PILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG----INGAPSFSPDGRRLALTLSR----------  268 (433)
T ss_pred             ccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC----CccCceECCCCCEEEEEEeC----------
Confidence            344678888 55 465554332   389999988876555322 11    23467899999877766432          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                           .....|+.+|.++++.+.+..........+++||++.|+++...  ...|+.++.+++.   .+.+.........
T Consensus       269 -----~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~g~~~~~  340 (433)
T PRK04922        269 -----DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQGNYNAR  340 (433)
T ss_pred             -----CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEeecCCCCccC
Confidence                 12346999999988877654433333567899999988776433  3468888876532   2222211223346


Q ss_pred             eEECCCCCEEE
Q 046018          202 VRSNSNGEFWV  212 (310)
Q Consensus       202 i~~d~~G~l~v  212 (310)
                      ..++++|+..+
T Consensus       341 ~~~SpDG~~Ia  351 (433)
T PRK04922        341 ASVSPDGKKIA  351 (433)
T ss_pred             EEECCCCCEEE
Confidence            78999996433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=3.4e-05  Score=70.56  Aligned_cols=164  Identities=10%  Similarity=0.082  Sum_probs=93.9

Q ss_pred             cccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC
Q 046018           29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK  104 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g  104 (310)
                      +..+|..+.+...+....+.....++++ +| .|+++....   .|+.+|.+++..+++...   .  .......++|||
T Consensus       222 I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~---~--~~~~~~~wSpDG  295 (427)
T PRK02889        222 VYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS---S--GIDTEPFFSPDG  295 (427)
T ss_pred             EEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEEEEECCCCCcEECCCC---C--CCCcCeEEcCCC
Confidence            5555654432222222223445678998 55 565554432   388889887765544221   1  123456899999


Q ss_pred             CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEcc
Q 046018          105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLH  182 (310)
Q Consensus       105 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~  182 (310)
                      ++|+++...               ...-.|+.++.+++..+.+..........+++|||+.++++....  ..|++++.+
T Consensus       296 ~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~  360 (427)
T PRK02889        296 RSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA  360 (427)
T ss_pred             CEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence            977776532               113468888887776665543222233578999999887664433  268899887


Q ss_pred             CCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecC
Q 046018          183 GPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAK  217 (310)
Q Consensus       183 ~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~  217 (310)
                      ++.   ...+... .......++++|+ |+++...+
T Consensus       361 ~g~---~~~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        361 TGQ---VTALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CCC---eEEccCC-CCccCceECCCCCEEEEEEecC
Confidence            542   2222221 1235678899996 44444333

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=8.2e-05  Score=62.34  Aligned_cols=163  Identities=13%  Similarity=0.064  Sum_probs=105.5

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ......|.+.| .+..++....+ .|..+|.+..+.+.+...      ..+.-.|+||+|- +++....           
T Consensus       100 ~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------~~~pi~AfDp~GL-ifA~~~~-----------  160 (311)
T KOG1446|consen  100 KKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------SGRPIAAFDPEGL-IFALANG-----------  160 (311)
T ss_pred             CceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEec------CCCcceeECCCCc-EEEEecC-----------
Confidence            35677899999 66788887765 477888886655444322      2355688999996 6655532           


Q ss_pred             hhcCCCCceEEEEeCC---CCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---C
Q 046018          125 ILSGDKTGRLLKYEKT---TKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---L  195 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~---~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~  195 (310)
                            ...|..||..   .|-++.+.   +....-+.|.++|||+.|+++ +.++.++.+|.-.+..  ...+..   .
T Consensus       161 ------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~--~~tfs~~~~~  231 (311)
T KOG1446|consen  161 ------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTV--KSTFSGYPNA  231 (311)
T ss_pred             ------CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcE--eeeEeeccCC
Confidence                  3367777753   23344432   223345799999999988887 6678888888643321  122222   2


Q ss_pred             CCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccch
Q 046018          196 PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLS  241 (310)
Q Consensus       196 ~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~  241 (310)
                      ...|-..++.|||++.++....+.     +..++ ..|+.+.....+
T Consensus       232 ~~~~~~a~ftPds~Fvl~gs~dg~-----i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  232 GNLPLSATFTPDSKFVLSGSDDGT-----IHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             CCcceeEEECCCCcEEEEecCCCc-----EEEEEcCCCcEeeEecCC
Confidence            235667889999999888877665     55554 566666665443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=4e-05  Score=70.19  Aligned_cols=180  Identities=11%  Similarity=0.106  Sum_probs=102.0

Q ss_pred             EEEeCCCCC--eEEEEE--eccccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEE
Q 046018           12 LKWQGDELG--WTEFAV--TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQL   83 (310)
Q Consensus        12 ~~~~~~~~~--W~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~   83 (310)
                      +.|.++.+.  ++....  ..|..++..+...+.+....+.....++++ +| .|++.....   .|+.+|.++++.+.+
T Consensus       204 p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~l  282 (430)
T PRK00178        204 PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLSRV  282 (430)
T ss_pred             eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCeEEc
Confidence            356665543  332221  234445554432222222223334678888 55 565554432   399999998877655


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDR  163 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~  163 (310)
                      ... .    .......++|||+.|+++...               .....|+.++.++++.+.+...........++||+
T Consensus       283 t~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg  342 (430)
T PRK00178        283 TNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADG  342 (430)
T ss_pred             ccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            321 1    123456789999878777532               12346999998888776654332233456899999


Q ss_pred             CeEEEEecCCc--eEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEE-EEEec
Q 046018          164 TFILIAETSNC--RILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFW-VALHA  216 (310)
Q Consensus       164 ~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~-va~~~  216 (310)
                      +.++++....+  .|+++|++++.   ...+... .......++++|+.. ++...
T Consensus       343 ~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~-~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        343 KTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT-SLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CEEEEEEccCCceEEEEEECCCCC---EEEccCC-CCCCCceECCCCCEEEEEEec
Confidence            98887754333  58888877542   2333221 122345788898644 34433

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.49  E-value=7.3e-06  Score=79.93  Aligned_cols=79  Identities=11%  Similarity=0.206  Sum_probs=54.0

Q ss_pred             eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCC
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKG  105 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~  105 (310)
                      ..+.|.+|.+   .......-.|..++..+ +|.|||++.. =|.|+-+++... .+.... ......-.-||++| +|.
T Consensus       348 R~veC~~C~G---~a~~~~L~aPvala~a~-DGSl~VGDfN-yIRRI~~dg~v~-tIl~L~-~t~~sh~Yy~AvsPvdgt  420 (1899)
T KOG4659|consen  348 RDVECPKCEG---KADSISLFAPVALAYAP-DGSLIVGDFN-YIRRISQDGQVS-TILTLG-LTDTSHSYYIAVSPVDGT  420 (1899)
T ss_pred             ccccCCCCCC---ccccceeeceeeEEEcC-CCcEEEccch-heeeecCCCceE-EEEEec-CCCccceeEEEecCcCce
Confidence            3455667777   44444556789999999 9999999876 378887876543 444432 12223456799998 677


Q ss_pred             EEEEEeCC
Q 046018          106 VIYFTDSS  113 (310)
Q Consensus       106 ~l~v~~~~  113 (310)
                       ||+++..
T Consensus       421 -lyvSdp~  427 (1899)
T KOG4659|consen  421 -LYVSDPL  427 (1899)
T ss_pred             -EEecCCC
Confidence             9999864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.48  E-value=0.00021  Score=65.55  Aligned_cols=142  Identities=13%  Similarity=0.067  Sum_probs=88.8

Q ss_pred             ceeceEEEeCCCCc-EEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ......++++ +|+ |..+...   ..|+.+|..+++.+++... .+    .....+++|||++|+++...         
T Consensus       202 ~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~---------  266 (435)
T PRK05137        202 SLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PG----MTFAPRFSPDGRKVVMSLSQ---------  266 (435)
T ss_pred             CCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CC----cccCcEECCCCCEEEEEEec---------
Confidence            3445688888 554 5444332   2499999988876555322 11    23467899999877766532         


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPD  200 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~  200 (310)
                            .....|+.+|.+++..+.+..........+++|||+.|+++...  ...|++++.+++.   .+.+....+...
T Consensus       267 ------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~  337 (435)
T PRK05137        267 ------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYS  337 (435)
T ss_pred             ------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCccc
Confidence                  12456999999888777665433334568899999988766433  3479999877542   222322222234


Q ss_pred             eeEECCCCCEEE
Q 046018          201 NVRSNSNGEFWV  212 (310)
Q Consensus       201 ~i~~d~~G~l~v  212 (310)
                      ...++++|+..+
T Consensus       338 ~~~~SpdG~~ia  349 (435)
T PRK05137        338 TPVWSPRGDLIA  349 (435)
T ss_pred             CeEECCCCCEEE
Confidence            567889996433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=0.00026  Score=64.74  Aligned_cols=141  Identities=10%  Similarity=0.091  Sum_probs=88.7

Q ss_pred             eeceEEEeCCCCc-EEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           48 RPLGIRFDKKTGD-LYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        48 ~p~gl~~d~~~g~-l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....+++| +|+ |.++...   ..|+.++.++++.+.+... .+    ....++++|||++|+++...          
T Consensus       200 ~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPDG~~La~~~~~----------  263 (429)
T PRK03629        200 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPDGSKLAFALSK----------  263 (429)
T ss_pred             ceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCCCCEEEEEEcC----------
Confidence            445788999 664 4433322   2388889888876555322 11    23468999999978876532          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                           .....|+.+|.++++.+.+..........+|+|||+.|+++...  ...||+++++++.   ...+.........
T Consensus       264 -----~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~  335 (429)
T PRK03629        264 -----TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQD  335 (429)
T ss_pred             -----CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccC
Confidence                 11335999999988877665444445678999999987655332  2478888877542   2223222223346


Q ss_pred             eEECCCCCEEE
Q 046018          202 VRSNSNGEFWV  212 (310)
Q Consensus       202 i~~d~~G~l~v  212 (310)
                      ..+++||+..+
T Consensus       336 ~~~SpDG~~Ia  346 (429)
T PRK03629        336 ADVSSDGKFMV  346 (429)
T ss_pred             EEECCCCCEEE
Confidence            78899996443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=98.45  E-value=0.00023  Score=59.98  Aligned_cols=233  Identities=14%  Similarity=0.112  Sum_probs=129.4

Q ss_pred             CccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCC--C--C-eEEEEEeec--CC-ccccCCcceEEeCCCCEEEEE
Q 046018           40 PDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPE--G--G-LATQLVTEA--AG-QPLRFTNDLDIDEHKGVIYFT  110 (310)
Q Consensus        40 ~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~--~--~-~~~~~~~~~--~~-~~~~~~~~i~~d~~g~~l~v~  110 (310)
                      ++...-...|.||++.+ .+-+||++...+ ...+|.+  +  + ........+  .+ .....|.++++..... +-|+
T Consensus        16 ~~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~-F~vt   93 (336)
T TIGR03118        16 QIVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT-FVVS   93 (336)
T ss_pred             cccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc-eEEc
Confidence            34444557899999999 889999999866 3333433  1  1 111112221  11 1123577777765544 4333


Q ss_pred             eCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE------EEEecC--CcccceEEEecC--CCeEEEEecCCceEEEEE
Q 046018          111 DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV------TILLQG--LAFANGVALSRD--RTFILIAETSNCRILRFW  180 (310)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~------~~~~~~--~~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~  180 (310)
                      .....-     ...++....+|.|..|.+.-+..      ..+...  ..--.|+++...  +.+||.++..+++|-+||
T Consensus        94 ~~g~~~-----~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd  168 (336)
T TIGR03118        94 GEGITG-----PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK  168 (336)
T ss_pred             CCCccc-----ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence            311000     00011123477888887643322      122111  112358888754  568999999999999998


Q ss_pred             ccCCCCCcceeeee--CC--CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCce
Q 046018          181 LHGPNSGKQDVFAE--LP--GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHA  256 (310)
Q Consensus       181 ~~~~~~~~~~~~~~--~~--~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
                      -.-.+......+.+  +|  ..|.+|.-- .|+|||+--....           .++  .            .+.+...+
T Consensus       169 ~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~-----------~~~--d------------~v~G~G~G  222 (336)
T TIGR03118       169 GSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDA-----------DRN--D------------EVAGAGLG  222 (336)
T ss_pred             CccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCC-----------ccc--c------------cccCCCcc
Confidence            54221111112222  22  246677443 4788887543221           100  0            01233345


Q ss_pred             EEEEECCCCCEEEEEEcCCCCeecceeEEEE-------eCCEEEEecCCCCeEEEecc
Q 046018          257 TAIKLSEKGEVLEVLEDCEGKTLSFISEVEE-------KDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       257 ~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~-------~~g~l~vgs~~~~~i~~~~~  307 (310)
                      .+-.+|.+|++++.+..  +..++.+=.++.       ..+.|.||++.+.+|..||.
T Consensus       223 ~VdvFd~~G~l~~r~as--~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~  278 (336)
T TIGR03118       223 YVNVFTLNGQLLRRVAS--SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP  278 (336)
T ss_pred             eEEEEcCCCcEEEEecc--CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence            66678999999998853  334555543332       36899999999999999984

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.45  E-value=1.1e-05  Score=71.01  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             cceeceEEEeCC---CCcEEEEECCC---------ceEEEeCCCC--eE---EEEEee-cC-CccccCCcceEEeCCCCE
Q 046018           46 CGRPLGIRFDKK---TGDLYIADAYL---------GFQVVGPEGG--LA---TQLVTE-AA-GQPLRFTNDLDIDEHKGV  106 (310)
Q Consensus        46 ~~~p~gl~~d~~---~g~l~v~~~~~---------gi~~~d~~~~--~~---~~~~~~-~~-~~~~~~~~~i~~d~~g~~  106 (310)
                      .....||+++++   ++.||++....         .|.|+..+.+  .+   +.+... +. ....+....|+++|||. 
T Consensus        48 ~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-  126 (331)
T PF07995_consen   48 ERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-  126 (331)
T ss_dssp             TBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-
T ss_pred             cCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-
Confidence            367889999982   48999988732         3777644333  22   223222 22 23446677899999997 


Q ss_pred             EEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC-------------eEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018          107 IYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK-------------EVTILLQGLAFANGVALSRDRTFILIAETSN  173 (310)
Q Consensus       107 l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~  173 (310)
                      ||++.-......    ...-.....|.|+++++++.             ..++++.++..|.+++|+|....||+++.+.
T Consensus       127 LYvs~G~~~~~~----~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  127 LYVSVGDGGNDD----NAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             EEEEEB-TTTGG----GGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred             EEEEeCCCCCcc----cccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence            999974321100    00001223677888887643             2345566777788888888833488887654


Q ss_pred             ---ceEEEEE
Q 046018          174 ---CRILRFW  180 (310)
Q Consensus       174 ---~~i~~~~  180 (310)
                         ..|.++.
T Consensus       203 ~~~dein~i~  212 (331)
T PF07995_consen  203 DGWDEINRIE  212 (331)
T ss_dssp             SSSEEEEEE-
T ss_pred             CCCcEEEEec
Confidence               3455543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.43  E-value=0.00041  Score=57.45  Aligned_cols=149  Identities=9%  Similarity=0.116  Sum_probs=97.2

Q ss_pred             cceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .....++++.+ +|+..++..-++ +..+|..+++.++....    .....-++++++|.+ -.++.+.           
T Consensus        63 sH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~G----H~~dVlsva~s~dn~-qivSGSr-----------  125 (315)
T KOG0279|consen   63 SHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVG----HTKDVLSVAFSTDNR-QIVSGSR-----------  125 (315)
T ss_pred             ceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEe----cCCceEEEEecCCCc-eeecCCC-----------
Confidence            34566888988 888777766666 55569888765443322    122467899999998 6666543           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecC--CcccceEEEecCC-CeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQG--LAFANGVALSRDR-TFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~~~gi~~~~d~-~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                            +..+..||..++-.-++...  -...+.+.|+|.. ...+++.+..+.|.+||.++-+.  ...+..-.++.+-
T Consensus       126 ------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t  197 (315)
T KOG0279|consen  126 ------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNT  197 (315)
T ss_pred             ------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEE
Confidence                  77888999875433333333  2346899999985 44566667888999999875322  1112222245577


Q ss_pred             eEECCCCCEEEEEecCCc
Q 046018          202 VRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~  219 (310)
                      +++++||.+-++...+++
T Consensus       198 ~~vSpDGslcasGgkdg~  215 (315)
T KOG0279|consen  198 VTVSPDGSLCASGGKDGE  215 (315)
T ss_pred             EEECCCCCEEecCCCCce
Confidence            899999998777544443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=0.00016  Score=65.81  Aligned_cols=180  Identities=13%  Similarity=0.096  Sum_probs=105.2

Q ss_pred             EEEEeCCCCC--eE-EEE--EeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEE
Q 046018           11 ILKWQGDELG--WT-EFA--VTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQ   82 (310)
Q Consensus        11 i~~~~~~~~~--W~-~~~--~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~   82 (310)
                      -+.|.++.+.  ++ ...  ...++.+|..+.+.+.+....+......++++..+|.+.....   .|+.+|.+++..++
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~  271 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ  271 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence            4678887663  32 332  2345556765544333333323333456888333566554432   39999998887766


Q ss_pred             EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC
Q 046018           83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD  162 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d  162 (310)
                      +.... .    .-....++|||++|+++....               ....|+++|.++++.+.+..... .+ ..++||
T Consensus       272 LT~~~-~----~d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPD  329 (419)
T PRK04043        272 ITNYP-G----IDVNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTY  329 (419)
T ss_pred             cccCC-C----ccCccEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEeCccCCC-cC-ceECCC
Confidence            53321 1    112347999998899887431               23479999999888866543221 22 489999


Q ss_pred             CCeEEEEecCC--------ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEec
Q 046018          163 RTFILIAETSN--------CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHA  216 (310)
Q Consensus       163 ~~~lyv~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~  216 (310)
                      |+.+.++....        ..|++++++++.   .+.+... +.-....++|||+ |+++...
T Consensus       330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             CCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence            99876654432        478888887542   2333221 1123467889986 5455443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.43  E-value=1.7e-05  Score=77.52  Aligned_cols=174  Identities=24%  Similarity=0.338  Sum_probs=107.1

Q ss_pred             eEEEEEeccccc----cccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEee----------
Q 046018           21 WTEFAVTTSQRK----ECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTE----------   86 (310)
Q Consensus        21 W~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~----------   86 (310)
                      |--.++.|-.|.    .|.... ....-....|.||++|+ .|.||+++.. .|..+|.++ .+..+...          
T Consensus       446 ~evvaG~Ge~Clp~desCGDGa-lA~dA~L~~PkGIa~dk-~g~lYfaD~t-~IR~iD~~g-iIstlig~~~~~~~p~~C  521 (1899)
T KOG4659|consen  446 YEVVAGDGEVCLPADESCGDGA-LAQDAQLIFPKGIAFDK-MGNLYFADGT-RIRVIDTTG-IISTLIGTTPDQHPPRTC  521 (1899)
T ss_pred             eeEEeccCcCccccccccCcch-hcccceeccCCceeEcc-CCcEEEeccc-EEEEeccCc-eEEEeccCCCCccCcccc
Confidence            654555555554    232211 12233446799999999 9999999765 477777653 33333221          


Q ss_pred             c-----CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec------------
Q 046018           87 A-----AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ------------  149 (310)
Q Consensus        87 ~-----~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~------------  149 (310)
                      .     ....+.-|.++|++|-.+.+||-+                   ++-|+++++. +++.++..            
T Consensus       522 ~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld-------------------~nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~  581 (1899)
T KOG4659|consen  522 AQITKLVDLQLEWPTSLAVDPMDNSLLVLD-------------------TNVVLRITVV-HRVRIILGRPTHCDLANATS  581 (1899)
T ss_pred             ccccchhheeeecccceeecCCCCeEEEee-------------------cceEEEEccC-ccEEEEcCCccccccCCCch
Confidence            0     112345699999999655599998                   5567777765 34443321            


Q ss_pred             ---------CCcccceEEEecCCCeEEEEecCCceEEEEEc---cC-------CCC-------Ccceeee------e--C
Q 046018          150 ---------GLAFANGVALSRDRTFILIAETSNCRILRFWL---HG-------PNS-------GKQDVFA------E--L  195 (310)
Q Consensus       150 ---------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~---~~-------~~~-------~~~~~~~------~--~  195 (310)
                               .+..+..|+++++|. |||+++..++|-++..   ++       .+.       ....++.      .  .
T Consensus       582 ~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~  660 (1899)
T KOG4659|consen  582 SASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAK  660 (1899)
T ss_pred             hhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccc
Confidence                     122356899999997 9999998776655543   21       100       0011111      1  0


Q ss_pred             CCCCCeeEECCCCCEEEEEecCCc
Q 046018          196 PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       196 ~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      -..|..+|+.|||.+++|+..+..
T Consensus       661 lnsp~alaVsPdg~v~IAD~gN~r  684 (1899)
T KOG4659|consen  661 LNSPYALAVSPDGDVIIADSGNSR  684 (1899)
T ss_pred             cCCcceEEECCCCcEEEecCCchh
Confidence            136889999999999999987754

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.42  E-value=4.2e-05  Score=65.82  Aligned_cols=154  Identities=18%  Similarity=0.291  Sum_probs=94.1

Q ss_pred             ceeceEEEeCCC-----CcEEEEECC-CceEEEeCCCCeEEEEEeecC------------Cccc---cCCcceEEeC---
Q 046018           47 GRPLGIRFDKKT-----GDLYIADAY-LGFQVVGPEGGLATQLVTEAA------------GQPL---RFTNDLDIDE---  102 (310)
Q Consensus        47 ~~p~gl~~d~~~-----g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~------------~~~~---~~~~~i~~d~---  102 (310)
                      .....|++|..+     +.+|+++.. .||.++|..+++..++.....            +...   ....+++.++   
T Consensus        61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~  140 (287)
T PF03022_consen   61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISP  140 (287)
T ss_dssp             GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTST
T ss_pred             cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCC
Confidence            455678888733     479999998 579999999988777654310            0011   1134566654   


Q ss_pred             CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC---CC----------CeEEEEecCCcccceEEEecCCCeEEEE
Q 046018          103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK---TT----------KEVTILLQGLAFANGVALSRDRTFILIA  169 (310)
Q Consensus       103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~~----------~~~~~~~~~~~~~~gi~~~~d~~~lyv~  169 (310)
                      +|++||+....                 ...+|++..   .+          ..++.+........|++++++|. ||++
T Consensus       141 d~r~LYf~~ls-----------------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~  202 (287)
T PF03022_consen  141 DGRWLYFHPLS-----------------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFT  202 (287)
T ss_dssp             TS-EEEEEETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEE
T ss_pred             CccEEEEEeCC-----------------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEe
Confidence            77778887643                 223554421   00          12233333345678999999876 9999


Q ss_pred             ecCCceEEEEEccCCCC-CcceeeeeCC---CCCCeeEECC--CCCEEEEEecCC
Q 046018          170 ETSNCRILRFWLHGPNS-GKQDVFAELP---GFPDNVRSNS--NGEFWVALHAKK  218 (310)
Q Consensus       170 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~---~~p~~i~~d~--~G~l~va~~~~~  218 (310)
                      +...+.|.++++++... ...+.+...+   .+|+++.+++  +|.||+..+.-.
T Consensus       203 ~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~  257 (287)
T PF03022_consen  203 DVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQ  257 (287)
T ss_dssp             ECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred             cCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcch
Confidence            99999999999886321 2334444433   4899999999  999999987644

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.42  E-value=0.00026  Score=65.11  Aligned_cols=142  Identities=11%  Similarity=0.041  Sum_probs=87.5

Q ss_pred             ceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           50 LGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        50 ~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....+++ +| .|+++....   .|+.+|.++++.+.+... .+    .....+++|||++|+++...            
T Consensus       221 ~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~~------------  282 (448)
T PRK04792        221 MSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLSK------------  282 (448)
T ss_pred             cCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEeC------------
Confidence            4578888 55 454443332   389999988876554322 11    22367899999978776432            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                         .....|+.+|.++++.+.+..........+|+||++.|+++...  ...|++++.++++   ...+...........
T Consensus       283 ---~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt~~g~~~~~~~  356 (448)
T PRK04792        283 ---DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLTFEGEQNLGGS  356 (448)
T ss_pred             ---CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEecCCCCCcCee
Confidence               12346999999888777655433344567899999988776433  3578888876542   222221112233467


Q ss_pred             ECCCCC-EEEEEe
Q 046018          204 SNSNGE-FWVALH  215 (310)
Q Consensus       204 ~d~~G~-l~va~~  215 (310)
                      +++||+ |+++..
T Consensus       357 ~SpDG~~l~~~~~  369 (448)
T PRK04792        357 ITPDGRSMIMVNR  369 (448)
T ss_pred             ECCCCCEEEEEEe
Confidence            899995 444433

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.41  E-value=0.00034  Score=57.07  Aligned_cols=150  Identities=10%  Similarity=0.055  Sum_probs=95.6

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....|.+.+ +++..++.....|..+|.+++...++....  ........+.+..+|+++|-+.               
T Consensus        41 sqVNrLeiTp-dk~~LAaa~~qhvRlyD~~S~np~Pv~t~e--~h~kNVtaVgF~~dgrWMyTgs---------------  102 (311)
T KOG0315|consen   41 SQVNRLEITP-DKKDLAAAGNQHVRLYDLNSNNPNPVATFE--GHTKNVTAVGFQCDGRWMYTGS---------------  102 (311)
T ss_pred             cceeeEEEcC-CcchhhhccCCeeEEEEccCCCCCceeEEe--ccCCceEEEEEeecCeEEEecC---------------
Confidence            5667788888 555555444445777787776543443321  1223456677888999555443               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS  206 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  206 (310)
                         .+|.+-.||...-.++.........|.+.+.|....|++++ .++.|++||+....-. .++..+..-....+.+.+
T Consensus       103 ---eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~~c~-~~liPe~~~~i~sl~v~~  177 (311)
T KOG0315|consen  103 ---EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGENSCT-HELIPEDDTSIQSLTVMP  177 (311)
T ss_pred             ---CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCCccc-cccCCCCCcceeeEEEcC
Confidence               37888889987655555444445568999999877788774 5689999998643111 111211112336789999


Q ss_pred             CCCEEEEEecCCc
Q 046018          207 NGEFWVALHAKKG  219 (310)
Q Consensus       207 ~G~l~va~~~~~~  219 (310)
                      ||...+|.+..+.
T Consensus       178 dgsml~a~nnkG~  190 (311)
T KOG0315|consen  178 DGSMLAAANNKGN  190 (311)
T ss_pred             CCcEEEEecCCcc
Confidence            9988888766554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.40  E-value=7.7e-05  Score=67.94  Aligned_cols=164  Identities=15%  Similarity=0.144  Sum_probs=96.1

Q ss_pred             cccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC
Q 046018           29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK  104 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g  104 (310)
                      +..++..+.....+.........+++++ +| .|+++....   .|+.++.+++..+.+...   .  ......+++++|
T Consensus       216 i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~---~--~~~~~~~~s~dg  289 (417)
T TIGR02800       216 IYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG---P--GIDTEPSWSPDG  289 (417)
T ss_pred             EEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEECCCC---C--CCCCCEEECCCC
Confidence            4445554422122222223344678888 55 566654432   399999988776554321   1  112356788999


Q ss_pred             CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEcc
Q 046018          105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLH  182 (310)
Q Consensus       105 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~  182 (310)
                      ++|+++....               ....|+.++.++++.+.+.........++++||++.++++....  ..|+.++++
T Consensus       290 ~~l~~~s~~~---------------g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       290 KSIAFTSDRG---------------GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             CEEEEEECCC---------------CCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence            8777665321               23469999998877766654444556788999999888775543  378888876


Q ss_pred             CCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecC
Q 046018          183 GPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAK  217 (310)
Q Consensus       183 ~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~  217 (310)
                      ++   ....+... .......+.++|+ |+++...+
T Consensus       355 ~~---~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       355 GG---GERVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CC---CeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            53   22222221 1234457888885 44444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.40  E-value=0.00031  Score=58.54  Aligned_cols=240  Identities=15%  Similarity=0.106  Sum_probs=125.8

Q ss_pred             cceeceEEEeCCCCc-EEEEECCCc--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           46 CGRPLGIRFDKKTGD-LYIADAYLG--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~-l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..+-|||+++|...+ +.++ ..-|  .+.||+++.+..+......  .-++--+-++++||+.||.|...++       
T Consensus        67 paR~Hgi~~~p~~~ravafA-RrPGtf~~vfD~~~~~~pv~~~s~~--~RHfyGHGvfs~dG~~LYATEndfd-------  136 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFA-RRPGTFAMVFDPNGAQEPVTLVSQE--GRHFYGHGVFSPDGRLLYATENDFD-------  136 (366)
T ss_pred             ccccCCeecCCCCcceEEEE-ecCCceEEEECCCCCcCcEEEeccc--CceeecccccCCCCcEEEeecCCCC-------
Confidence            356778998884443 3333 2223  6678998876544433322  2344556788999998888765432       


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecC-----------------CceEEEEEcc
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETS-----------------NCRILRFWLH  182 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~-----------------~~~i~~~~~~  182 (310)
                            ...|-|-.||.. ..++.+.   .-...|+.+.+.+||+.|.+++-+                 ..++..++..
T Consensus       137 ------~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a  209 (366)
T COG3490         137 ------PNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA  209 (366)
T ss_pred             ------CCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence                  134556678765 3454432   334569999999999988877531                 1122222211


Q ss_pred             CCCCCcceeee-eC-CCCCCeeEECCCCCEEEEEecCCcc-ceeeeeeccccccEEeeccchhhhhcc------cccCCC
Q 046018          183 GPNSGKQDVFA-EL-PGFPDNVRSNSNGEFWVALHAKKGL-FGKLILLNSWLGKTLLKLPLSFRQLHS------LLVGGK  253 (310)
Q Consensus       183 ~~~~~~~~~~~-~~-~~~p~~i~~d~~G~l~va~~~~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~------~~~~~~  253 (310)
                      .+.+-++..+. .+ .....-+..+.||.+|.++...+.. -.-.+.-....|+.+..++.|.+....      ......
T Consensus       210 tG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~  289 (366)
T COG3490         210 TGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR  289 (366)
T ss_pred             ccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence            11111111111 00 0234668999999999998765431 000011112344555555555432111      111123


Q ss_pred             CceEEEEECCCCCEEEEEEcCCCCeec-----ceeEEEEeCCEEEEecCCCCeEE
Q 046018          254 PHATAIKLSEKGEVLEVLEDCEGKTLS-----FISEVEEKDGQLWMGSVLMPFIG  303 (310)
Q Consensus       254 ~~~~~~~~d~~g~~~~~~~~~~g~~~~-----~~~~~~~~~g~l~vgs~~~~~i~  303 (310)
                      ...++...+|.|+...++.-..|....     ....+....+-+-+.|. ..+|.
T Consensus       290 ~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg-~G~~~  343 (366)
T COG3490         290 RDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSG-QGRII  343 (366)
T ss_pred             cCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecC-CceEE
Confidence            345555567888887777654554322     12233344455555554 44444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.39  E-value=3.2e-05  Score=71.77  Aligned_cols=160  Identities=16%  Similarity=0.127  Sum_probs=101.7

Q ss_pred             ceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           50 LGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .-+++|+ .|.|.++....  .|+.++.++|++.-+.....+    -+.+++++|.|. +.++.+.              
T Consensus       439 scvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg----PVs~l~f~~~~~-~LaS~SW--------------  498 (893)
T KOG0291|consen  439 SCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG----PVSGLSFSPDGS-LLASGSW--------------  498 (893)
T ss_pred             eEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCC----cceeeEEccccC-eEEeccc--------------
Confidence            3588999 89988887764  499999999976433222111    246789999999 6666543              


Q ss_pred             CCCCceEEEEeC--CCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcce-------------e
Q 046018          128 GDKTGRLLKYEK--TTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQD-------------V  191 (310)
Q Consensus       128 ~~~~g~v~~~d~--~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~-------------~  191 (310)
                         +.+|-.||.  ..++.+++. -....-++++.|||+.|-|+ +-++.|..||.... +.+..+             .
T Consensus       499 ---DkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~  573 (893)
T KOG0291|consen  499 ---DKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR  573 (893)
T ss_pred             ---cceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEE-EecceEEEEEhhhceeeccccchhhccccccccce
Confidence               556766664  234565543 23345689999999988887 66789999998632 221111             1


Q ss_pred             eee---CC-CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeec
Q 046018          192 FAE---LP-GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL  238 (310)
Q Consensus       192 ~~~---~~-~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~  238 (310)
                      +..   .. ..-..+++++||...+|....+.+    ..+.-+++.+++++
T Consensus       574 ~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i----CiY~v~~~vllkkf  620 (893)
T KOG0291|consen  574 ITAENSAKGKTFTTICYSADGKCILAGGESNSI----CIYDVPEGVLLKKF  620 (893)
T ss_pred             eehhhcccCCceEEEEEcCCCCEEEecCCcccE----EEEECchhheeeeE
Confidence            110   00 112458999999988887665542    23334566666554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=9.7e-05  Score=67.62  Aligned_cols=175  Identities=14%  Similarity=0.175  Sum_probs=99.3

Q ss_pred             EEEeCCCCC--eEEEEE--eccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCC---ceEEEeCCCCeEEEE
Q 046018           12 LKWQGDELG--WTEFAV--TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYL---GFQVVGPEGGLATQL   83 (310)
Q Consensus        12 ~~~~~~~~~--W~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~---gi~~~d~~~~~~~~~   83 (310)
                      +.|.++.+.  ++....  ..+..+|..+.....+....+....+++++ +|+ |.++....   .|+.+|.+++..+++
T Consensus       209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~~l  287 (429)
T PRK01742        209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPSQL  287 (429)
T ss_pred             ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence            456665543  332211  235555655432222222223444688999 664 55554333   388889888776555


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDR  163 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~  163 (310)
                      ...     .......+++|||++|+++...               ...-.|+.++..++..+.+. .. . ...+++|||
T Consensus       288 t~~-----~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l~-~~-~-~~~~~SpDG  344 (429)
T PRK01742        288 TSG-----AGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLVG-GR-G-YSAQISADG  344 (429)
T ss_pred             ccC-----CCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEec-CC-C-CCccCCCCC
Confidence            321     1135678999999977776532               12346888887766555442 11 1 346799999


Q ss_pred             CeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018          164 TFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       164 ~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~  216 (310)
                      +.++++..  ..++++|..++.   ...+... .......++++|++.+....
T Consensus       345 ~~ia~~~~--~~i~~~Dl~~g~---~~~lt~~-~~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        345 KTLVMING--DNVVKQDLTSGS---TEVLSST-FLDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CEEEEEcC--CCEEEEECCCCC---eEEecCC-CCCCCceECCCCCEEEEEEc
Confidence            98877643  578888876432   2222111 11245678999976555443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.35  E-value=0.00059  Score=62.45  Aligned_cols=140  Identities=12%  Similarity=0.072  Sum_probs=85.0

Q ss_pred             eceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           49 PLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        49 p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....+++| +| .|+++....   .|+.+|..+++.+++... .+    .....+++|||+.|+++...           
T Consensus       198 v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~-----------  260 (427)
T PRK02889        198 IISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG----SNSAPAWSPDGRTLAVALSR-----------  260 (427)
T ss_pred             cccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEEcc-----------
Confidence            34678888 55 555554432   389999988876655322 11    23468899999877776432           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec--CCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET--SNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                          .....||.+|.+++..+.+..........+|+|||+.|+++..  +...||.++.+++.   .+.+..........
T Consensus       261 ----~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---~~~lt~~g~~~~~~  333 (427)
T PRK02889        261 ----DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---AQRVTFTGSYNTSP  333 (427)
T ss_pred             ----CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---eEEEecCCCCcCce
Confidence                1234699999887766655433323345789999998876543  23467777765432   22222111223356


Q ss_pred             EECCCCCEEE
Q 046018          203 RSNSNGEFWV  212 (310)
Q Consensus       203 ~~d~~G~l~v  212 (310)
                      .++++|+..+
T Consensus       334 ~~SpDG~~Ia  343 (427)
T PRK02889        334 RISPDGKLLA  343 (427)
T ss_pred             EECCCCCEEE
Confidence            7899996433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.33  E-value=0.00057  Score=62.25  Aligned_cols=143  Identities=14%  Similarity=0.130  Sum_probs=86.8

Q ss_pred             eceEEEeCCCCc-EEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           49 PLGIRFDKKTGD-LYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        49 p~gl~~d~~~g~-l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....++++ +|+ |+++....   .|+.+|..+++.+.+... .+    ....++++|+|+.|+++...           
T Consensus       192 ~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~----~~~~~~~spDg~~l~~~~~~-----------  254 (417)
T TIGR02800       192 ILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PG----MNGAPAFSPDGSKLAVSLSK-----------  254 (417)
T ss_pred             eecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEECC-----------
Confidence            44567888 554 55444332   388899988765544321 11    23457899999878776532           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                          .....|+.++..++..+.+...........++||++.|+++...  ...|+.++.+++.   ...+..........
T Consensus       255 ----~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~  327 (417)
T TIGR02800       255 ----DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASP  327 (417)
T ss_pred             ----CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCe
Confidence                12346999999887766554332223356899999988665432  3479998877532   22222222334567


Q ss_pred             EECCCCCEEEEEe
Q 046018          203 RSNSNGEFWVALH  215 (310)
Q Consensus       203 ~~d~~G~l~va~~  215 (310)
                      .++++|+..+...
T Consensus       328 ~~spdg~~i~~~~  340 (417)
T TIGR02800       328 SWSPDGDLIAFVH  340 (417)
T ss_pred             EECCCCCEEEEEE
Confidence            8899996554443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.00082  Score=61.19  Aligned_cols=137  Identities=12%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             ceEEEeCCCCc--EEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           50 LGIRFDKKTGD--LYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        50 ~gl~~d~~~g~--l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....+++ +|+  +|++....   .|+.+|..+++.+++... .+    ......++|||+.+.++...           
T Consensus       191 ~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g----~~~~~~~SPDG~~la~~~~~-----------  253 (419)
T PRK04043        191 IFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG----MLVVSDVSKDGSKLLLTMAP-----------  253 (419)
T ss_pred             EeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC----cEEeeEECCCCCEEEEEEcc-----------
Confidence            3577888 554  66555442   399999999987766432 11    12235689999878777642           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                          .....|+.+|.++++.+.+...........++|||+.|+++...  ...|++++.+++..   +.+... +. .+.
T Consensus       254 ----~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~---~rlt~~-g~-~~~  324 (419)
T PRK04043        254 ----KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV---EQVVFH-GK-NNS  324 (419)
T ss_pred             ----CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---EeCccC-CC-cCc
Confidence                12567999999888777665333222345799999988776533  33899998876422   222211 11 235


Q ss_pred             EECCCCCEEE
Q 046018          203 RSNSNGEFWV  212 (310)
Q Consensus       203 ~~d~~G~l~v  212 (310)
                      .++++|+..+
T Consensus       325 ~~SPDG~~Ia  334 (419)
T PRK04043        325 SVSTYKNYIV  334 (419)
T ss_pred             eECCCCCEEE
Confidence            7899996443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.26  E-value=0.00018  Score=65.24  Aligned_cols=192  Identities=14%  Similarity=0.111  Sum_probs=101.9

Q ss_pred             cccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCcccc----ccceeceEEEeCCCCcEEEEECCCceEEEeCCCC
Q 046018            5 GVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEH----ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG   78 (310)
Q Consensus         5 ~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~   78 (310)
                      .+-.++|...-.|.++  |++++ .|+.++.......+....    ......++..|. +|.||+.+.. +|.++....-
T Consensus       243 ~lp~~~I~ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~-dGsLWv~t~~-giv~~~~a~w  319 (671)
T COG3292         243 MLPSGNILLLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT-DGSLWVGTYG-GIVRYLTADW  319 (671)
T ss_pred             CCcchheeeeecccCCCEEEeec-ccceeEecCCCCccccccccCCccccccceeecc-CCCEeeeccC-ceEEEecchh
Confidence            3456678888888887  99655 446655322211111111    113456899999 9999999776 4555533221


Q ss_pred             -eEEEEEeecCCccccCCcceEEeC---CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCc
Q 046018           79 -LATQLVTEAAGQPLRFTNDLDIDE---HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLA  152 (310)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~i~~d~---~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~  152 (310)
                       .+..+... .+....   -.+..+   +.. ++..++                  .|.+...+..+|......  -...
T Consensus       320 ~~ma~in~~-dG~v~~---~~~~a~~ll~~~-v~~~ns------------------~g~L~van~stG~~v~sv~q~Rg~  376 (671)
T COG3292         320 KRMAVINDS-DGGVSQ---YEAVAPALLSWG-VRQLNS------------------IGELMVANGSTGELVRSVHQLRGM  376 (671)
T ss_pred             hheeeeecC-CCchhh---hhccCchhcccc-eeeccc------------------cceEEEecCCCCcEEEEeeecccc
Confidence             11112221 111111   111222   222 555442                  455666777666543322  1223


Q ss_pred             ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---CC-CCCCeeEECCCCCEEEEEecCCccceeeeeec
Q 046018          153 FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LP-GFPDNVRSNSNGEFWVALHAKKGLFGKLILLN  228 (310)
Q Consensus       153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~-~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~  228 (310)
                      ...-..++.+++ +|+. +.++.|.+++...    ....+.+   ++ .....|..|++++||+++..+-      +.+.
T Consensus       377 nit~~~~d~~g~-lWlg-s~q~GLsrl~n~n----~~avlde~agl~ss~V~aived~dnsLWIGTs~Gl------vk~~  444 (671)
T COG3292         377 NITTTLEDSRGR-LWLG-SMQNGLSRLDNKN----EWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGL------VKRD  444 (671)
T ss_pred             ccchhhhccCCc-EEEE-ecccchhhhccCC----cccccccccCCcccceeeeeecCCCCEEEeccCCe------EecC
Confidence            334455666666 8887 5567888887553    1112222   22 2235688899999999997765      4445


Q ss_pred             cccccE
Q 046018          229 SWLGKT  234 (310)
Q Consensus       229 ~~~g~~  234 (310)
                      ++.++.
T Consensus       445 pe~~~v  450 (671)
T COG3292         445 PESGRV  450 (671)
T ss_pred             ccccch
Confidence            444443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=0.0014  Score=60.06  Aligned_cols=141  Identities=11%  Similarity=0.130  Sum_probs=86.1

Q ss_pred             eceEEEeCCCCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....++++...|..+...   ..|++++.++++.+.+... .+    .....+++|||++|+++...            
T Consensus       201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g----~~~~~~~SpDG~~la~~~~~------------  263 (430)
T PRK00178        201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG----LNGAPAWSPDGSKLAFVLSK------------  263 (430)
T ss_pred             eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC----CcCCeEECCCCCEEEEEEcc------------
Confidence            4567888833355444333   2389999998876555321 11    23357899999877766532            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                         .....|+.+|.++++.+.+...........++||++.++++...  ...|++++.+++.   ...+...........
T Consensus       264 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt~~~~~~~~~~  337 (430)
T PRK00178        264 ---DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVTFVGNYNARPR  337 (430)
T ss_pred             ---CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccceE
Confidence               12346999999988777655433334457899999988776432  3478888876542   222221112233467


Q ss_pred             ECCCCCEEE
Q 046018          204 SNSNGEFWV  212 (310)
Q Consensus       204 ~d~~G~l~v  212 (310)
                      ++++|+..+
T Consensus       338 ~Spdg~~i~  346 (430)
T PRK00178        338 LSADGKTLV  346 (430)
T ss_pred             ECCCCCEEE
Confidence            888886433

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.21  E-value=6.4e-05  Score=63.74  Aligned_cols=151  Identities=18%  Similarity=0.234  Sum_probs=98.3

Q ss_pred             eeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEee-----cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTE-----AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~-----~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      ..|.|++ . ++++|+++.. ..+..+++.-. +.+..+.     .....-...|++|... |+-.|||.-++.-....|
T Consensus       104 diHdia~-~-~~~l~fVNT~fSCLatl~~~~S-F~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gW  179 (335)
T TIGR03032       104 DAHDLAL-G-AGRLLFVNTLFSCLATVSPDYS-FVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGW  179 (335)
T ss_pred             chhheee-c-CCcEEEEECcceeEEEECCCCc-cccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCcccc
Confidence            3567888 4 6788888776 56999988744 3333222     1223345689999864 444888763321001111


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                      +-    ...+|.+ .+|..++  +++.+++..|++..+. |++ ||+++++.+.|..+|++.   +..+.++..|+.|.|
T Consensus       180 R~----~~~~gG~-vidv~s~--evl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va~vpG~~rG  247 (335)
T TIGR03032       180 RE----GRRDGGC-VIDIPSG--EVVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVAFLPGFTRG  247 (335)
T ss_pred             cc----cccCCeE-EEEeCCC--CEEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEEECCCCCcc
Confidence            11    1123333 3676655  3457889999988887 566 999999999999999863   346777788999999


Q ss_pred             eEECCCCCEE-EEEec
Q 046018          202 VRSNSNGEFW-VALHA  216 (310)
Q Consensus       202 i~~d~~G~l~-va~~~  216 (310)
                      +.+.  |++. |+...
T Consensus       248 L~f~--G~llvVgmSk  261 (335)
T TIGR03032       248 LAFA--GDFAFVGLSK  261 (335)
T ss_pred             ccee--CCEEEEEecc
Confidence            9998  7655 55444

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.19  E-value=0.0014  Score=54.85  Aligned_cols=160  Identities=17%  Similarity=0.209  Sum_probs=95.1

Q ss_pred             eceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      -.||.+.. +|.||.++..-   .|.++|++++++......+   +..+..+|++..+  .||.-+..            
T Consensus        47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d--~l~qLTWk------------  108 (264)
T PF05096_consen   47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP---PRYFGEGITILGD--KLYQLTWK------------  108 (264)
T ss_dssp             EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T---TT--EEEEEEETT--EEEEEESS------------
T ss_pred             CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC---ccccceeEEEECC--EEEEEEec------------
Confidence            34999966 78999998863   3999999999865443332   2236678887754  49998854            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC----Ce
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP----DN  201 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p----~~  201 (310)
                           .+..+.||+++-+...-..-....-|++  .|++.||+++ ++.+|+.+|++.-.....-.+. ..+.|    +-
T Consensus       109 -----~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNE  179 (264)
T PF05096_consen  109 -----EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNE  179 (264)
T ss_dssp             -----SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEE
T ss_pred             -----CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEE-ECCEECCCcEe
Confidence                 7889999998654432222123345666  6777788885 6889999998742111111111 11222    33


Q ss_pred             eEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          202 VRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      +.+- +|.||.-.+....+    +.+++.+|+....+.+
T Consensus       180 LE~i-~G~IyANVW~td~I----~~Idp~tG~V~~~iDl  213 (264)
T PF05096_consen  180 LEYI-NGKIYANVWQTDRI----VRIDPETGKVVGWIDL  213 (264)
T ss_dssp             EEEE-TTEEEEEETTSSEE----EEEETTT-BEEEEEE-
T ss_pred             EEEE-cCEEEEEeCCCCeE----EEEeCCCCeEEEEEEh
Confidence            4442 68888877776653    4445566666555543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.0031  Score=53.11  Aligned_cols=148  Identities=9%  Similarity=0.095  Sum_probs=94.7

Q ss_pred             ccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ....+..|.++. +|.+.++... .-+..+|...++....+..    +-..+.-+++....+.+..+...          
T Consensus        13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~s----kkyG~~~~~Fth~~~~~i~sStk----------   77 (311)
T KOG1446|consen   13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINS----KKYGVDLACFTHHSNTVIHSSTK----------   77 (311)
T ss_pred             CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeec----ccccccEEEEecCCceEEEccCC----------
Confidence            346788999998 8887777555 4688888887765444332    11134445554443323333321          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                            .+..|..++..+.++.+...+.. ..+.|.++|-+. .+++.+..++|..||++..   +.+....+. .+--.
T Consensus        78 ------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~---~cqg~l~~~-~~pi~  146 (311)
T KOG1446|consen   78 ------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVK---KCQGLLNLS-GRPIA  146 (311)
T ss_pred             ------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCC---CCceEEecC-CCcce
Confidence                  24557777777777776655543 468999999876 7888888899999998732   222222222 24567


Q ss_pred             EECCCCCEEEEEecCC
Q 046018          203 RSNSNGEFWVALHAKK  218 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~  218 (310)
                      ++||+|.++++...+.
T Consensus       147 AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen  147 AFDPEGLIFALANGSE  162 (311)
T ss_pred             eECCCCcEEEEecCCC
Confidence            8999998877766654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.16  E-value=0.0013  Score=59.45  Aligned_cols=213  Identities=13%  Similarity=0.112  Sum_probs=107.6

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccc--cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPL--RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL  135 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~--~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (310)
                      ++.||+....+.|+.+|+++++.. .......+..  .....-++. ++. +|++.                  ..+.++
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~sP~v~-~~~-v~~~~------------------~~g~v~  218 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVK-WTVNLDVPSLTLRGESAPATA-FGG-AIVGG------------------DNGRVS  218 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEe-eeecCCCCcccccCCCCCEEE-CCE-EEEEc------------------CCCEEE
Confidence            568888866666999999988752 2111111100  001112222 344 77765                  267788


Q ss_pred             EEeCCCCeEEEEecCCcccc---------eEEEec--CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          136 KYEKTTKEVTILLQGLAFAN---------GVALSR--DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       136 ~~d~~~~~~~~~~~~~~~~~---------gi~~~~--d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                      .+|+++|+...... ...|.         .+..+|  .+..+|++. .++.++.+|+..++    ..+....+.+..+.+
T Consensus       219 a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~----~~W~~~~~~~~~~~~  292 (394)
T PRK11138        219 AVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQ----IVWKREYGSVNDFAV  292 (394)
T ss_pred             EEEccCChhhheec-cccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCC----EEEeecCCCccCcEE
Confidence            89988886543211 11110         011112  234588874 56899999987442    223221112233444


Q ss_pred             CCCCCEEEEEecCCccceeeeeeccccccEEeeccchh-h---hh---cccccCCCCceEEEEECC-CCCEEEEEEcCCC
Q 046018          205 NSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSF-R---QL---HSLLVGGKPHATAIKLSE-KGEVLEVLEDCEG  276 (310)
Q Consensus       205 d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~-~---~~---~~~~~~~~~~~~~~~~d~-~g~~~~~~~~~~g  276 (310)
                       .+|+||+++..+. +    ...+..+|+.+...+... .   .|   ....+.....+.+.++|+ +|+++..+....+
T Consensus       293 -~~~~vy~~~~~g~-l----~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~  366 (394)
T PRK11138        293 -DGGRIYLVDQNDR-V----YALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS  366 (394)
T ss_pred             -ECCEEEEEcCCCe-E----EEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence             3577888776544 1    333445666654432211 0   00   011111222334556764 4766655543221


Q ss_pred             CeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          277 KTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       277 ~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      .   ..+..+..+++||+++. +..|+.|++
T Consensus       367 ~---~~s~P~~~~~~l~v~t~-~G~l~~~~~  393 (394)
T PRK11138        367 G---FLSEPVVADDKLLIQAR-DGTVYAITR  393 (394)
T ss_pred             c---ceeCCEEECCEEEEEeC-CceEEEEeC
Confidence            1   13334456889999986 667887764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.16  E-value=0.00099  Score=61.49  Aligned_cols=149  Identities=12%  Similarity=0.180  Sum_probs=97.5

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeC-CCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGP-EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .....+++.+ +++..++...+. |..+|. +.+...+....    -...+++++++|+|+ +.++.+.           
T Consensus       204 ~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g----H~~~v~~~~f~p~g~-~i~Sgs~-----------  266 (456)
T KOG0266|consen  204 RGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG----HSTYVTSVAFSPDGN-LLVSGSD-----------  266 (456)
T ss_pred             cceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecC----CCCceEEEEecCCCC-EEEEecC-----------
Confidence            4566899999 887666655544 666777 44343333221    123578999999998 7777654           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--CCCCe
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP--GFPDN  201 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~  201 (310)
                            ++.|..||..+++......... ...++++.+|++.|+. .+.++.|.+||..++.......+....  .....
T Consensus       267 ------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s-~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  339 (456)
T KOG0266|consen  267 ------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS-ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTS  339 (456)
T ss_pred             ------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE-cCCCccEEEEECCCCceeeeecccCCCCCCceeE
Confidence                  7889999999877766554443 4678999999995554 477899999998754311011111111  11267


Q ss_pred             eEECCCCCEEEEEecCCc
Q 046018          202 VRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~  219 (310)
                      +.++++|...+....++.
T Consensus       340 ~~fsp~~~~ll~~~~d~~  357 (456)
T KOG0266|consen  340 VQFSPNGKYLLSASLDRT  357 (456)
T ss_pred             EEECCCCcEEEEecCCCe
Confidence            899999976666555543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.16  E-value=0.00079  Score=59.79  Aligned_cols=169  Identities=16%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCc-eEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTG-RLLK  136 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g-~v~~  136 (310)
                      +|.+++....+..+.+++..+...++...    ....-..+..++++  +.+++.                  +| .+-.
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~----~~VrY~r~~~~~e~--~vigt~------------------dgD~l~i  386 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQVGKK----GGVRYRRIQVDPEG--DVIGTN------------------DGDKLGI  386 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEcCCC----CceEEEEEccCCcc--eEEecc------------------CCceEEE
Confidence            56666665655678888877765444221    11223345566663  555552                  44 6889


Q ss_pred             EeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEe
Q 046018          137 YEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       137 ~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~  215 (310)
                      ||.++++++....+++....+.+++||+.+.++ ...-.||++|++.++.   +.... -.+....+.+.++++ |+|-.
T Consensus       387 yd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-Ndr~el~vididngnv---~~idkS~~~lItdf~~~~nsr-~iAYa  461 (668)
T COG4946         387 YDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-NDRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNSR-WIAYA  461 (668)
T ss_pred             EecCCceEEEeeCCccceEEEEEcCCCcEEEEE-cCceEEEEEEecCCCe---eEecccccceeEEEEEcCCce-eEEEe
Confidence            999999999888889899999999999977777 4567999999986532   33222 223455677777774 44433


Q ss_pred             cCCccceeeeeeccccccEEeeccchhhhhcccccCCCCc
Q 046018          216 AKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPH  255 (310)
Q Consensus       216 ~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  255 (310)
                      -...-+..-|..++..+..+-.+..|...-.+.+|.....
T Consensus       462 fP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r  501 (668)
T COG4946         462 FPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR  501 (668)
T ss_pred             cCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence            2222233336666666655555555544444444444333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.0018  Score=59.35  Aligned_cols=140  Identities=14%  Similarity=0.127  Sum_probs=84.1

Q ss_pred             eeceEEEeCCCCc-EEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           48 RPLGIRFDKKTGD-LYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        48 ~p~gl~~d~~~g~-l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....++++ +|+ |..+....   .|+.+|.++++.+.+... .+    ....++++|||++|+++...          
T Consensus       205 ~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g----~~~~~~wSPDG~~La~~~~~----------  268 (429)
T PRK01742        205 PLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RG----HNGAPAFSPDGSRLAFASSK----------  268 (429)
T ss_pred             ccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CC----ccCceeECCCCCEEEEEEec----------
Confidence            355788999 554 54443322   388899988765544322 11    23368999999977776422          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                           ...-.|+.+|.+++..+.+..........+|+|||+.|+++....  -.||.++..+..   ...+ ...+  ..
T Consensus       269 -----~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~~~--~~  337 (429)
T PRK01742        269 -----DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLV-GGRG--YS  337 (429)
T ss_pred             -----CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEe-cCCC--CC
Confidence                 112358899988777766554333456789999999877764433  366666654431   2222 1111  34


Q ss_pred             eEECCCCCEEEEE
Q 046018          202 VRSNSNGEFWVAL  214 (310)
Q Consensus       202 i~~d~~G~l~va~  214 (310)
                      ..++++|+..+..
T Consensus       338 ~~~SpDG~~ia~~  350 (429)
T PRK01742        338 AQISADGKTLVMI  350 (429)
T ss_pred             ccCCCCCCEEEEE
Confidence            6688898754433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.13  E-value=0.00049  Score=59.48  Aligned_cols=184  Identities=14%  Similarity=0.137  Sum_probs=100.6

Q ss_pred             CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC---------Cce
Q 046018          105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS---------NCR  175 (310)
Q Consensus       105 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~---------~~~  175 (310)
                      +|+||.|....             +..++++.+|.+++++.-..+..-.++ ++++||++.+|++++.         ++-
T Consensus         3 ~rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv   68 (342)
T PF06433_consen    3 HRVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV   68 (342)
T ss_dssp             TEEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence            35999886421             125799999999988765444443445 7789999999998874         457


Q ss_pred             EEEEEccCCCC-Ccceeee----eCCCCCCeeEECCCCC-EEEEEecCCccceeeeeeccccccEEeeccchh-hh--hc
Q 046018          176 ILRFWLHGPNS-GKQDVFA----ELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWLGKTLLKLPLSF-RQ--LH  246 (310)
Q Consensus       176 i~~~~~~~~~~-~~~~~~~----~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~-~~--~~  246 (310)
                      |..||..+-.. .+..+..    .....+..+.+..||+ +||.+...-..+   -..+...++++..++.|. ..  |.
T Consensus        69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV---tVVDl~~~kvv~ei~~PGC~~iyP~  145 (342)
T PF06433_consen   69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV---TVVDLAAKKVVGEIDTPGCWLIYPS  145 (342)
T ss_dssp             EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE---EEEETTTTEEEEEEEGTSEEEEEEE
T ss_pred             EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE---EEEECCCCceeeeecCCCEEEEEec
Confidence            88888764211 1111110    0012456788888885 777766554321   244556778888887762 11  10


Q ss_pred             ---cc-ccCCCCceEEEEECCCCCEEEEEE---cCCCCeecceeEEEE-eCCEEEEecCCCCeEEEecc
Q 046018          247 ---SL-LVGGKPHATAIKLSEKGEVLEVLE---DCEGKTLSFISEVEE-KDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       247 ---~~-~~~~~~~~~~~~~d~~g~~~~~~~---~~~g~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~~~  307 (310)
                         ++ ..-+.+.-+-+.+|.+|+....-.   .++-.+ -....+.. .++++|+-++ ...|+..+.
T Consensus       146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp-~f~~~~~~~~~~~~~F~Sy-~G~v~~~dl  212 (342)
T PF06433_consen  146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDP-LFEHPAYSRDGGRLYFVSY-EGNVYSADL  212 (342)
T ss_dssp             ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS--B-S--EEETTTTEEEEEBT-TSEEEEEEE
T ss_pred             CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcc-cccccceECCCCeEEEEec-CCEEEEEec
Confidence               00 011334445567788887663322   111111 01122222 3578888888 666776553

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.12  E-value=0.0026  Score=57.13  Aligned_cols=156  Identities=15%  Similarity=0.130  Sum_probs=77.5

Q ss_pred             CceEEEEeCCCCeEEEEecCCccc-------------ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFA-------------NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG  197 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~-------------~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (310)
                      .+.++.+|+++|+...... ...+             ....+  +++.+|++. ..+.++.+|+..++    ..+.....
T Consensus       199 ~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~----~~W~~~~~  270 (377)
T TIGR03300       199 GGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGR----VLWKRDAS  270 (377)
T ss_pred             CCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCc----EEEeeccC
Confidence            5789999998886542111 1111             11122  234588874 56899999986432    12221111


Q ss_pred             CCCeeEECCCCCEEEEEecCCccceeeeee-ccccccEEeec-cchhhhhcc------cccCCCCceEEEEECCC-CCEE
Q 046018          198 FPDNVRSNSNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKL-PLSFRQLHS------LLVGGKPHATAIKLSEK-GEVL  268 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~d~~-g~~~  268 (310)
                      ......++ ++++|++...+.      +.. +..+|+.+... .........      ..+.....+.+..+|++ |+++
T Consensus       271 ~~~~p~~~-~~~vyv~~~~G~------l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       271 SYQGPAVD-DNRLYVTDADGV------VVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             CccCceEe-CCEEEEECCCCe------EEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence            12233343 467887764433      333 34466665443 221111111      11111223345566653 7776


Q ss_pred             EEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEe
Q 046018          269 EVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIY  305 (310)
Q Consensus       269 ~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~  305 (310)
                      ..+..+.+.   ..+..+..+++||+++. +..|+.|
T Consensus       344 ~~~~~~~~~---~~~sp~~~~~~l~v~~~-dG~l~~~  376 (377)
T TIGR03300       344 ARLKTDGSG---IASPPVVVGDGLLVQTR-DGDLYAF  376 (377)
T ss_pred             EEEEcCCCc---cccCCEEECCEEEEEeC-CceEEEe
Confidence            666533221   12333456789999997 5557665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.11  E-value=0.0003  Score=63.90  Aligned_cols=109  Identities=21%  Similarity=0.312  Sum_probs=73.0

Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--------cCCcccceEEEecCC
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--------QGLAFANGVALSRDR  163 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--------~~~~~~~gi~~~~d~  163 (310)
                      +..|.+|++.|+|+ +||+...                 .|+|++++..++..+.+.        ......-||+++||-
T Consensus        29 L~~Pw~maflPDG~-llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQ-LWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCe-EEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            45899999999998 9999721                 589999987655433221        123446799999874


Q ss_pred             ------CeEEEEecC---------CceEEEEEccC--CCCCc-ceeeeeCCCC----CCeeEECCCCCEEEEEecCC
Q 046018          164 ------TFILIAETS---------NCRILRFWLHG--PNSGK-QDVFAELPGF----PDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       164 ------~~lyv~~~~---------~~~i~~~~~~~--~~~~~-~~~~~~~~~~----p~~i~~d~~G~l~va~~~~~  218 (310)
                            ++||++.+.         ..+|.++..+.  ..... ..++...|..    -..|++++||.|||+.-+..
T Consensus        91 ~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g  167 (454)
T TIGR03606        91 MQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG  167 (454)
T ss_pred             cccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence                  468887522         46898887752  12222 2334444421    24589999999999987764

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.08  E-value=4.2e-05  Score=53.00  Aligned_cols=68  Identities=21%  Similarity=0.356  Sum_probs=50.5

Q ss_pred             eEEEeCCCCcEEEEEC---------------C---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeC
Q 046018           51 GIRFDKKTGDLYIADA---------------Y---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDS  112 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~---------------~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~  112 (310)
                      ++++++++|.||+++.               .   +++.++||.+++.+.+.+.     +.+||+|++++|+.+++|+..
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----LYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----ESSEEEEEE-TTSSEEEEEEG
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----CCccCeEEEcCCCCEEEEEec
Confidence            5788884499999995               1   2399999999998777653     568999999999998888874


Q ss_pred             CCchhhhhhhhhhhcCCCCceEEEEeCC
Q 046018          113 STSFQRRQFMSSILSGDKTGRLLKYEKT  140 (310)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~  140 (310)
                      .                 ..+|.+|-.+
T Consensus        77 ~-----------------~~Ri~rywl~   87 (89)
T PF03088_consen   77 G-----------------RYRILRYWLK   87 (89)
T ss_dssp             G-----------------GTEEEEEESS
T ss_pred             c-----------------CceEEEEEEe
Confidence            3                 6678888765

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.08  E-value=6.3e-05  Score=66.40  Aligned_cols=176  Identities=13%  Similarity=0.154  Sum_probs=109.5

Q ss_pred             cccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEE
Q 046018            3 YTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLAT   81 (310)
Q Consensus         3 ~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~   81 (310)
                      ++...|+.+..||.+.+.       -+.+           ......|.=+.+.+++.+++++... ..|..+|.+++++.
T Consensus       274 LS~sfD~~lKlwDtETG~-------~~~~-----------f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv  335 (503)
T KOG0282|consen  274 LSASFDRFLKLWDTETGQ-------VLSR-----------FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV  335 (503)
T ss_pred             eeeecceeeeeeccccce-------EEEE-----------EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence            455566677777776641       0111           1112234456677744477777666 45999999988753


Q ss_pred             EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEE
Q 046018           82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVAL  159 (310)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~  159 (310)
                      +-.    +..+...++|.+-++|+ -+|+++.                 ++.+..|+-.........  .....--.+++
T Consensus       336 qeY----d~hLg~i~~i~F~~~g~-rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~  393 (503)
T KOG0282|consen  336 QEY----DRHLGAILDITFVDEGR-RFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTL  393 (503)
T ss_pred             HHH----HhhhhheeeeEEccCCc-eEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceec
Confidence            222    22344688999999999 6666543                 556777775543222211  11112236888


Q ss_pred             ecCCCeEEEEecCCceEEEEEccCC-CCCcceeeee--CCCCCCeeEECCCCCEEEEEecCCc
Q 046018          160 SRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAE--LPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       160 ~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      .|.++ .+++.+..++|++|..... +......+..  .+|++-.+.+++||...++....+.
T Consensus       394 ~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~  455 (503)
T KOG0282|consen  394 HPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK  455 (503)
T ss_pred             CCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence            99988 6778889999999986543 2222334433  4678889999999988777666554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.05  E-value=0.0015  Score=58.69  Aligned_cols=176  Identities=15%  Similarity=0.155  Sum_probs=110.2

Q ss_pred             CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE
Q 046018            2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA   80 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~   80 (310)
                      +|++..+|.|..|+.....                 ++... ........+|+.+. .+.|+......-+.+++..++..
T Consensus       335 i~SgsyDG~I~~W~~~~g~-----------------~~~~~g~~h~nqI~~~~~~~-~~~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGT-----------------SDRLAGKGHTNQIKGMAASE-SGELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             EEeeccCceEEEEecCCcc-----------------ccccccccccceEEEEeecC-CCcEEEEecCCeEEEEecccCcc
Confidence            5777777777777775540                 00000 11224566888876 78999888887788877655433


Q ss_pred             EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEe
Q 046018           81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALS  160 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~  160 (310)
                      +.-..   -.....|-++++.++|..+.++.                   ...|..+.-.++ .... +-.-.+.++|++
T Consensus       397 t~~~~---~~lg~QP~~lav~~d~~~avv~~-------------------~~~iv~l~~~~~-~~~~-~~~y~~s~vAv~  452 (603)
T KOG0318|consen  397 TKSEV---VKLGSQPKGLAVLSDGGTAVVAC-------------------ISDIVLLQDQTK-VSSI-PIGYESSAVAVS  452 (603)
T ss_pred             cccce---eecCCCceeEEEcCCCCEEEEEe-------------------cCcEEEEecCCc-ceee-ccccccceEEEc
Confidence            21100   01234788999999987455554                   333544442222 2222 223357899999


Q ss_pred             cCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCcc
Q 046018          161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                      ||+..+.|. -..++|++|.+.+..+.+.....+..+.+..+++++||.+++++-..+.+
T Consensus       453 ~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv  511 (603)
T KOG0318|consen  453 PDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV  511 (603)
T ss_pred             CCCCEEEEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence            999966665 45578999999875443222333344667899999999988888777764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=0.0019  Score=55.58  Aligned_cols=147  Identities=14%  Similarity=0.267  Sum_probs=94.0

Q ss_pred             eceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ...|...+ +|..|+.....  .|..+|++++..+++...  +  .....-+..+|||..++.++-              
T Consensus       198 Vtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--g--lgg~slLkwSPdgd~lfaAt~--------------  258 (445)
T KOG2139|consen  198 VTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPK--G--LGGFSLLKWSPDGDVLFAATC--------------  258 (445)
T ss_pred             eeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccccc--C--CCceeeEEEcCCCCEEEEecc--------------
Confidence            34788888 78777776653  488899999887666422  1  123456889999996665552              


Q ss_pred             cCCCCceEEEEeCCCCe--EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCC------C--cceeeeeC-
Q 046018          127 SGDKTGRLLKYEKTTKE--VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNS------G--KQDVFAEL-  195 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~--~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~------~--~~~~~~~~-  195 (310)
                          ++....|+ ++..  .++..-..+...+-+++|+|++|+++-.++..||....+++..      +  .....+++ 
T Consensus       259 ----davfrlw~-e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  259 ----DAVFRLWQ-ENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             ----cceeeeeh-hcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence                33233331 2222  2222223335678889999999999889999999987764311      0  11112222 


Q ss_pred             -----------CCCCCeeEECCCCCEEEEEecCCc
Q 046018          196 -----------PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       196 -----------~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                                 .+.+..++.|+.|+..+..+.+..
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence                       246788999999987777776654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.04  E-value=0.0019  Score=54.05  Aligned_cols=154  Identities=16%  Similarity=0.167  Sum_probs=95.7

Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE--ecCCcccceEEEecCCCeEEEEe
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL--LQGLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~~~gi~~~~d~~~lyv~~  170 (310)
                      .+..++.+..+|. ||-++-.               .....|.++|+++++....  .+..-+..||++..|  .||.-.
T Consensus        45 aFTQGL~~~~~g~-LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT  106 (264)
T PF05096_consen   45 AFTQGLEFLDDGT-LYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT  106 (264)
T ss_dssp             -EEEEEEEEETTE-EEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE
T ss_pred             ccCccEEecCCCE-EEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE
Confidence            3567888888887 9998832               2355799999999876542  233446789999854  489887


Q ss_pred             cCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhccccc
Q 046018          171 TSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLV  250 (310)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~  250 (310)
                      ..++..++||.+.  ......+ ..++...|++.|. ..||+++.+..      +..                       
T Consensus       107 Wk~~~~f~yd~~t--l~~~~~~-~y~~EGWGLt~dg-~~Li~SDGS~~------L~~-----------------------  153 (264)
T PF05096_consen  107 WKEGTGFVYDPNT--LKKIGTF-PYPGEGWGLTSDG-KRLIMSDGSSR------LYF-----------------------  153 (264)
T ss_dssp             SSSSEEEEEETTT--TEEEEEE-E-SSS--EEEECS-SCEEEE-SSSE------EEE-----------------------
T ss_pred             ecCCeEEEEcccc--ceEEEEE-ecCCcceEEEcCC-CEEEEECCccc------eEE-----------------------
Confidence            8899999999763  1111222 2446678999764 46888876543      222                       


Q ss_pred             CCCCceEEEEECCC-CCEEEEEE-cCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          251 GGKPHATAIKLSEK-GEVLEVLE-DCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       251 ~~~~~~~~~~~d~~-g~~~~~~~-~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                                +||. -+...... ..+|.+...+..+...+|.+|.--+.++.|+++|.
T Consensus       154 ----------~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp  202 (264)
T PF05096_consen  154 ----------LDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP  202 (264)
T ss_dssp             ----------E-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred             ----------ECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence                      2322 11121111 12455666677777789999999999999999986

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.04  E-value=0.00066  Score=56.98  Aligned_cols=156  Identities=10%  Similarity=0.130  Sum_probs=93.7

Q ss_pred             cceeceEEEeCCCCcEEEEECCCc---eEEEeCCCCeEEEEE-e--ec-CCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLG---FQVVGPEGGLATQLV-T--EA-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~g---i~~~d~~~~~~~~~~-~--~~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      ...|.+|+.-. +|..-+++...+   ++.+|+++..+.... .  .. .........++|.|+..+++|++-...    
T Consensus       128 ~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~----  202 (316)
T COG3204         128 FSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN----  202 (316)
T ss_pred             cCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC----
Confidence            36788898876 665555555543   445577755432111 1  11 111234567999999988899986431    


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEec-C--------CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcc
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-G--------LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQ  189 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~--------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~  189 (310)
                                  --+|+.++........-.. .        .....|+.+++..+.|+|-+..++.|..++.+|...+..
T Consensus       203 ------------P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l  270 (316)
T COG3204         203 ------------PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL  270 (316)
T ss_pred             ------------CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeE
Confidence                        2347777643222221110 0        123468888887777888777888999998876532222


Q ss_pred             eeeeeCC------CCCCeeEECCCCCEEEEEecCC
Q 046018          190 DVFAELP------GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       190 ~~~~~~~------~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      .......      ..+.|++.|.+|+||++.-.+.
T Consensus       271 sL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnl  305 (316)
T COG3204         271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNL  305 (316)
T ss_pred             EeccCCCCCcccCCCcceeEECCCCCEEEEecCCc
Confidence            1111110      2478999999999999987665

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.0062  Score=55.73  Aligned_cols=140  Identities=12%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             eEEEeCCCCc----EEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           51 GIRFDKKTGD----LYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        51 gl~~d~~~g~----l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .-+++| +|+    +|+....+  .|+..+.++++.+++... .+    .....+++|||++|.++....          
T Consensus       189 sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g----~~~~p~wSPDG~~Laf~s~~~----------  252 (428)
T PRK01029        189 TPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG----NQLMPTFSPRKKLLAFISDRY----------  252 (428)
T ss_pred             cceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC----CccceEECCCCCEEEEEECCC----------
Confidence            457888 653    23444332  499999998877666432 12    123468999998777765321          


Q ss_pred             hhcCCCCceEEEEeCCC---CeEEEEecCC-cccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCC
Q 046018          125 ILSGDKTGRLLKYEKTT---KEVTILLQGL-AFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~---~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                         +..+-.+..++.++   ++.+.+.... ......+++|||+.|+++...  ...||+++.++.. +....+....+.
T Consensus       253 ---g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~  328 (428)
T PRK01029        253 ---GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRN  328 (428)
T ss_pred             ---CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCC
Confidence               00122233356543   3334443322 223457899999977665432  3468888765321 122223222223


Q ss_pred             CCeeEECCCCCE
Q 046018          199 PDNVRSNSNGEF  210 (310)
Q Consensus       199 p~~i~~d~~G~l  210 (310)
                      .....+++||+.
T Consensus       329 ~~~p~wSPDG~~  340 (428)
T PRK01029        329 SSCPAWSPDGKK  340 (428)
T ss_pred             ccceeECCCCCE
Confidence            356788999963

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.01  E-value=0.0052  Score=56.25  Aligned_cols=159  Identities=13%  Similarity=0.066  Sum_probs=85.5

Q ss_pred             cccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEE--EeCCC---CeEEEEEeecCCccccCCcceE
Q 046018           29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQV--VGPEG---GLATQLVTEAAGQPLRFTNDLD   99 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~--~d~~~---~~~~~~~~~~~~~~~~~~~~i~   99 (310)
                      ++.++..+.....+....+.....+++| +| .|.++....   .++.  ++..+   +..+++...    ........+
T Consensus       213 I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~  287 (428)
T PRK01029        213 IFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPS  287 (428)
T ss_pred             EEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeE
Confidence            4444544433333333334445678888 55 555544322   2444  34443   233333221    111234578


Q ss_pred             EeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC--CCeEEEEecCCcccceEEEecCCCeEEEEecC--Cce
Q 046018          100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT--TKEVTILLQGLAFANGVALSRDRTFILIAETS--NCR  175 (310)
Q Consensus       100 ~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~  175 (310)
                      ++|||++|+++....               ....|+.++.+  ++..+.+..........+++|||+.|+++...  ...
T Consensus       288 wSPDG~~Laf~s~~~---------------g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~  352 (428)
T PRK01029        288 FSPDGTRLVFVSNKD---------------GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ  352 (428)
T ss_pred             ECCCCCEEEEEECCC---------------CCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcE
Confidence            999999777765321               13358887764  23344443333334567899999988766443  347


Q ss_pred             EEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018          176 ILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF  210 (310)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  210 (310)
                      |+++|++++.   ...+...+.......+++||+.
T Consensus       353 I~v~dl~~g~---~~~Lt~~~~~~~~p~wSpDG~~  384 (428)
T PRK01029        353 ICVYDLATGR---DYQLTTSPENKESPSWAIDSLH  384 (428)
T ss_pred             EEEEECCCCC---eEEccCCCCCccceEECCCCCE
Confidence            9999987542   2333322233456788888863

>PTZ00421 coronin; Provisional

Probab=98.00  E-value=0.003  Score=58.67  Aligned_cols=146  Identities=9%  Similarity=0.013  Sum_probs=83.4

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++..+.++++....+ |..+|.++++.......    ....+.+++++++|+ +.++...            
T Consensus       126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~----h~~~V~sla~spdG~-lLatgs~------------  188 (493)
T PTZ00421        126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC----HSDQITSLEWNLDGS-LLCTTSK------------  188 (493)
T ss_pred             CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC----CCCceEEEEEECCCC-EEEEecC------------
Confidence            44567899883345555544444 78889887764322221    112478899999999 6666533            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCc--ccceEEEecCCCeEEEEe---cCCceEEEEEccCCCCCcceeee-eCCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLA--FANGVALSRDRTFILIAE---TSNCRILRFWLHGPNSGKQDVFA-ELPGFP  199 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~--~~~gi~~~~d~~~lyv~~---~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p  199 (310)
                           ++.|..||+.+++.........  ....+.+.+++..++.+.   +.++.|..||+..... ...... ......
T Consensus       189 -----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~  262 (493)
T PTZ00421        189 -----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSAL  262 (493)
T ss_pred             -----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCce
Confidence                 7889999998776433222221  234567788877554432   2357899999863211 111111 111111


Q ss_pred             CeeEECCCCCEEEEEe
Q 046018          200 DNVRSNSNGEFWVALH  215 (310)
Q Consensus       200 ~~i~~d~~G~l~va~~  215 (310)
                      ....+|+++++++...
T Consensus       263 ~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        263 FIPFFDEDTNLLYIGS  278 (493)
T ss_pred             EEEEEcCCCCEEEEEE
Confidence            2246788887655443

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=97.99  E-value=0.00027  Score=61.50  Aligned_cols=103  Identities=17%  Similarity=0.293  Sum_probs=72.3

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-----CcccceEEEecCCCeEEE
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-----LAFANGVALSRDRTFILI  168 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv  168 (310)
                      +|-+|+++.+|.-+||+|.                  --.|+.++++++..+.+...     ....|++.++++|. +|+
T Consensus       116 RPLGl~f~~~ggdL~VaDA------------------YlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyF  176 (376)
T KOG1520|consen  116 RPLGIRFDKKGGDLYVADA------------------YLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYF  176 (376)
T ss_pred             CcceEEeccCCCeEEEEec------------------ceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEE
Confidence            7899999999833999994                  33599999998877665432     34468999999665 999


Q ss_pred             EecC-----------------CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018          169 AETS-----------------NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       169 ~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      +++.                 ++++.+||+.++   ..+++.+.-..|+|+++++|+.+.+.+--.-
T Consensus       177 TDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK---~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~  240 (376)
T KOG1520|consen  177 TDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK---VTKVLLDGLYFPNGLALSPDGSFVLVAETTT  240 (376)
T ss_pred             eccccccchhheEEeeecCCCccceEEecCccc---chhhhhhcccccccccCCCCCCEEEEEeecc
Confidence            8875                 467777776532   1223333224799999999998666544443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.99  E-value=0.0059  Score=54.87  Aligned_cols=217  Identities=14%  Similarity=0.132  Sum_probs=105.7

Q ss_pred             EEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018           52 IRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT  131 (310)
Q Consensus        52 l~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (310)
                      .+++  ++.+|++...+.++.+|+++++.. ......+...   ...++ .++. +|+..                  ..
T Consensus       101 p~v~--~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~---~~p~v-~~~~-v~v~~------------------~~  154 (377)
T TIGR03300       101 VGAD--GGLVFVGTEKGEVIALDAEDGKEL-WRAKLSSEVL---SPPLV-ANGL-VVVRT------------------ND  154 (377)
T ss_pred             eEEc--CCEEEEEcCCCEEEEEECCCCcEe-eeeccCceee---cCCEE-ECCE-EEEEC------------------CC
Confidence            4444  578999877767999999888753 2111111111   11122 2444 77765                  26


Q ss_pred             ceEEEEeCCCCeEEEEecCCcc------cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC-------
Q 046018          132 GRLLKYEKTTKEVTILLQGLAF------ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF-------  198 (310)
Q Consensus       132 g~v~~~d~~~~~~~~~~~~~~~------~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------  198 (310)
                      +.|+.+|+++|+..........      ....++. ++ .+|+. ..++.++.+|+..++......+....+.       
T Consensus       155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~-~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~  231 (377)
T TIGR03300       155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVG-FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV  231 (377)
T ss_pred             CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEE-CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence            7899999988876532211111      0112222 33 46665 5567899999864421110001000000       


Q ss_pred             --CCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhh-h---cccccCCCCceEEEEECC-CCCEEEEE
Q 046018          199 --PDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ-L---HSLLVGGKPHATAIKLSE-KGEVLEVL  271 (310)
Q Consensus       199 --p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~d~-~g~~~~~~  271 (310)
                        .....+ .++.+|++...+. +    ...+..+|+.+...+..... +   ....+.....+.+.++|. +|+.+...
T Consensus       232 ~~~~~p~~-~~~~vy~~~~~g~-l----~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       232 DVDGDPVV-DGGQVYAVSYQGR-V----AALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             ccCCccEE-ECCEEEEEEcCCE-E----EEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence              011122 2567888776544 1    23334577766554422110 0   111122223345566665 35544333


Q ss_pred             EcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          272 EDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       272 ~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      ..-.+.   ..+.....++.||+++. +..|+.++.
T Consensus       306 ~~~~~~---~~ssp~i~g~~l~~~~~-~G~l~~~d~  337 (377)
T TIGR03300       306 DELKYR---QLTAPAVVGGYLVVGDF-EGYLHWLSR  337 (377)
T ss_pred             ccccCC---ccccCEEECCEEEEEeC-CCEEEEEEC
Confidence            111111   22333346778888875 566777664

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.99  E-value=0.0028  Score=52.63  Aligned_cols=175  Identities=8%  Similarity=0.099  Sum_probs=103.4

Q ss_pred             CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeE
Q 046018            2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLA   80 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~   80 (310)
                      .|++..|+.++-||.....                 ..+.+........++++++ +++-.|...... |-.+|..+.-.
T Consensus        78 alS~swD~~lrlWDl~~g~-----------------~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck  139 (315)
T KOG0279|consen   78 ALSASWDGTLRLWDLATGE-----------------STRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK  139 (315)
T ss_pred             EEeccccceEEEEEecCCc-----------------EEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE
Confidence            3556666777777765531                 0022232334566899999 555555555543 66667765432


Q ss_pred             EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEE
Q 046018           81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVAL  159 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~  159 (310)
                      -.+..   .....-.+.+.+.|+....++...+                .++.|-.||..+-+......+ ....+-+++
T Consensus       140 ~t~~~---~~~~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v  200 (315)
T KOG0279|consen  140 YTIHE---DSHREWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV  200 (315)
T ss_pred             EEEec---CCCcCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhhccccccccEEEEEE
Confidence            22221   1113467889999985225555533                377899999976555432222 234688999


Q ss_pred             ecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018          160 SRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       160 ~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      +|||. |..+.-..+.++.||++.++-  ...+. .......++|.| .++|++..-..
T Consensus       201 SpDGs-lcasGgkdg~~~LwdL~~~k~--lysl~-a~~~v~sl~fsp-nrywL~~at~~  254 (315)
T KOG0279|consen  201 SPDGS-LCASGGKDGEAMLWDLNEGKN--LYSLE-AFDIVNSLCFSP-NRYWLCAATAT  254 (315)
T ss_pred             CCCCC-EEecCCCCceEEEEEccCCce--eEecc-CCCeEeeEEecC-CceeEeeccCC
Confidence            99998 777777788999999874311  11111 112347789987 45777655444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.98  E-value=0.0037  Score=56.58  Aligned_cols=217  Identities=15%  Similarity=0.131  Sum_probs=106.0

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      +++++  +++||++...+.++.+|.++++.. ......+.....|   ++. ++. +|+..                  .
T Consensus       115 ~~~v~--~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~ssP---~v~-~~~-v~v~~------------------~  168 (394)
T PRK11138        115 GVTVA--GGKVYIGSEKGQVYALNAEDGEVA-WQTKVAGEALSRP---VVS-DGL-VLVHT------------------S  168 (394)
T ss_pred             ccEEE--CCEEEEEcCCCEEEEEECCCCCCc-ccccCCCceecCC---EEE-CCE-EEEEC------------------C
Confidence            35554  578999877666999999988742 2111111111111   222 455 88865                  2


Q ss_pred             CceEEEEeCCCCeEEEEecCCccc-------ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC-----
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFA-------NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF-----  198 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~-------~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----  198 (310)
                      .+.|+.+|+++|+...-.+.. .|       ...++. ++ .+|+. ..++.++.++...++..-...+....+.     
T Consensus       169 ~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~sP~v~-~~-~v~~~-~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~  244 (394)
T PRK11138        169 NGMLQALNESDGAVKWTVNLD-VPSLTLRGESAPATA-FG-GAIVG-GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR  244 (394)
T ss_pred             CCEEEEEEccCCCEeeeecCC-CCcccccCCCCCEEE-CC-EEEEE-cCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence            678999999988765432211 11       112232 23 47776 5668899988775422111111000000     


Q ss_pred             ----CCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhh-h---cccccCCCCceEEEEECCC-CCEEE
Q 046018          199 ----PDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ-L---HSLLVGGKPHATAIKLSEK-GEVLE  269 (310)
Q Consensus       199 ----p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~d~~-g~~~~  269 (310)
                          ...-.+ .+|.+|++...+. +    ...+..+|+.+...+..... +   ....+-......+.++|+. |+.+-
T Consensus       245 ~~~~~~sP~v-~~~~vy~~~~~g~-l----~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W  318 (394)
T PRK11138        245 LVDVDTTPVV-VGGVVYALAYNGN-L----VALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELW  318 (394)
T ss_pred             ccccCCCcEE-ECCEEEEEEcCCe-E----EEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEE
Confidence                001112 2577888776543 1    34445677776554332110 0   0001111223345566643 44332


Q ss_pred             EEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          270 VLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       270 ~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      ......+.   ..+.....+++||+++. +..|+.++.
T Consensus       319 ~~~~~~~~---~~~sp~v~~g~l~v~~~-~G~l~~ld~  352 (394)
T PRK11138        319 SQSDLLHR---LLTAPVLYNGYLVVGDS-EGYLHWINR  352 (394)
T ss_pred             cccccCCC---cccCCEEECCEEEEEeC-CCEEEEEEC
Confidence            22111111   12333446889998876 556766653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.97  E-value=0.00039  Score=56.76  Aligned_cols=145  Identities=9%  Similarity=0.027  Sum_probs=93.1

Q ss_pred             EEeCCCCCeEE-EEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCcc
Q 046018           13 KWQGDELGWTE-FAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQP   91 (310)
Q Consensus        13 ~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~   91 (310)
                      .||.+....+. ....++..+|+++..-.........+..+.++. +|++.....+.+|..+|+++-.+..-.+.    |
T Consensus       150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia~gssV~Fwdaksf~~lKs~k~----P  224 (334)
T KOG0278|consen  150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIAYGSSVKFWDAKSFGLLKSYKM----P  224 (334)
T ss_pred             EEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEecCceeEEeccccccceeeccC----c
Confidence            35655554433 223344445666633222233335666888988 89988777777898899886443222121    1


Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCC-cccceEEEecCCCeEEEE
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGL-AFANGVALSRDRTFILIA  169 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~-~~~~gi~~~~d~~~lyv~  169 (310)
                       ..+......|+.. +||+...                 +..+++||-.++.-.... .+. .....+.|+|||. +|.+
T Consensus       225 -~nV~SASL~P~k~-~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAs  284 (334)
T KOG0278|consen  225 -CNVESASLHPKKE-FFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYAS  284 (334)
T ss_pred             -cccccccccCCCc-eEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeec
Confidence             1345556778888 8888633                 678999999887543332 222 2347899999998 9999


Q ss_pred             ecCCceEEEEEcc
Q 046018          170 ETSNCRILRFWLH  182 (310)
Q Consensus       170 ~~~~~~i~~~~~~  182 (310)
                      .+..+.|..|...
T Consensus       285 GSEDGTirlWQt~  297 (334)
T KOG0278|consen  285 GSEDGTIRLWQTT  297 (334)
T ss_pred             cCCCceEEEEEec
Confidence            8988988888765

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.96  E-value=0.0014  Score=60.49  Aligned_cols=113  Identities=15%  Similarity=0.200  Sum_probs=80.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ .|++.+....++ |..+|.++++........    ...+..+++.++|+ ++++.+             
T Consensus       247 ~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----s~~is~~~f~~d~~-~l~s~s-------------  307 (456)
T KOG0266|consen  247 TYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGH----SDGISGLAFSPDGN-LLVSAS-------------  307 (456)
T ss_pred             CceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeecc----CCceEEEEECCCCC-EEEEcC-------------
Confidence            4557899999 667777766655 778899987765443321    12577899999999 555543             


Q ss_pred             hcCCCCceEEEEeCCCCeEE--EEecCCccc---ceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          126 LSGDKTGRLLKYEKTTKEVT--ILLQGLAFA---NGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~--~~~~~~~~~---~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                          .++.|..||..++...  ........+   .-+.++|++++++.+ ..++.+..|+...
T Consensus       308 ----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~~  365 (456)
T KOG0266|consen  308 ----YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLRS  365 (456)
T ss_pred             ----CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEccC
Confidence                3888999999988732  222333334   788999999977766 5667888888763

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.95  E-value=0.0015  Score=52.97  Aligned_cols=119  Identities=10%  Similarity=0.098  Sum_probs=74.4

Q ss_pred             eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018           70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ  149 (310)
Q Consensus        70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  149 (310)
                      |++++..+.....+... ..   ..+.+++.+|+|+.+.+....                ....+..||.+......+. 
T Consensus        41 l~~~~~~~~~~~~i~l~-~~---~~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~~-   99 (194)
T PF08662_consen   41 LFYLNEKNIPVESIELK-KE---GPIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSFG-   99 (194)
T ss_pred             EEEEecCCCccceeecc-CC---CceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEeec-
Confidence            77776665543333111 11   137899999999966555421                1347888888643333332 


Q ss_pred             CCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeC-CCCCCeeEECCCCCEEEEEe
Q 046018          150 GLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAEL-PGFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       150 ~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~va~~  215 (310)
                       ....|.|.++|+|++|.++..+  ++.|..||.+.     ...+... ......++++|+|+.+++..
T Consensus       100 -~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  100 -TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             -CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence             3456889999999988777543  46799999763     2223221 12346789999998777654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.90  E-value=0.0017  Score=55.51  Aligned_cols=165  Identities=15%  Similarity=0.064  Sum_probs=93.1

Q ss_pred             CCcceEEeCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcc---cceEEEecCCCeEEEE
Q 046018           94 FTNDLDIDEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAF---ANGVALSRDRTFILIA  169 (310)
Q Consensus        94 ~~~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~---~~gi~~~~d~~~lyv~  169 (310)
                      +..+++++|. +..+.|+-.                 +.-..+++|+.+++..........   --.-+|++||++||.+
T Consensus         6 RgH~~a~~p~~~~avafaRR-----------------PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytT   68 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARR-----------------PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTT   68 (305)
T ss_pred             cccceeeCCCCCeEEEEEeC-----------------CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEe
Confidence            5678888984 442333321                 233588999988876543322211   2235689999999998


Q ss_pred             ec----CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC-CEEEEEecCCccceeeeeeccccccEEeeccchhhh
Q 046018          170 ET----SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ  244 (310)
Q Consensus       170 ~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~  244 (310)
                      +.    ..+.|.+||.... ......+....-.|..+.+.+|| .|.||+..        |...+..|+....+..   +
T Consensus        69 End~~~g~G~IgVyd~~~~-~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG--------I~Thpd~GR~kLNl~t---M  136 (305)
T PF07433_consen   69 ENDYETGRGVIGVYDAARG-YRRIGEFPSHGIGPHELLLMPDGETLVVANGG--------IETHPDSGRAKLNLDT---M  136 (305)
T ss_pred             ccccCCCcEEEEEEECcCC-cEEEeEecCCCcChhhEEEcCCCCEEEEEcCC--------CccCcccCceecChhh---c
Confidence            65    4679999997622 11122232222358999999999 78777643        4455555544333221   0


Q ss_pred             hcccccCCCCceEEEEEC-CCCCEEEEEEcCCCCeecce-eEEEEeCCEEEEecC
Q 046018          245 LHSLLVGGKPHATAIKLS-EKGEVLEVLEDCEGKTLSFI-SEVEEKDGQLWMGSV  297 (310)
Q Consensus       245 ~~~~~~~~~~~~~~~~~d-~~g~~~~~~~~~~g~~~~~~-~~~~~~~g~l~vgs~  297 (310)
                                +..++.+| .+|++++....+.......+ +-....+|.+|+|..
T Consensus       137 ----------~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q  181 (305)
T PF07433_consen  137 ----------QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ  181 (305)
T ss_pred             ----------CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe
Confidence                      12345664 45777776554332211112 223344667776653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.89  E-value=0.0069  Score=50.43  Aligned_cols=204  Identities=15%  Similarity=0.154  Sum_probs=97.9

Q ss_pred             eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018           70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ  149 (310)
Q Consensus        70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  149 (310)
                      |..+|+.+++.. ..... ......+...++..+++ +|+++                  ..+.|+.+|.++|+...-..
T Consensus         5 l~~~d~~tG~~~-W~~~~-~~~~~~~~~~~~~~~~~-v~~~~------------------~~~~l~~~d~~tG~~~W~~~   63 (238)
T PF13360_consen    5 LSALDPRTGKEL-WSYDL-GPGIGGPVATAVPDGGR-VYVAS------------------GDGNLYALDAKTGKVLWRFD   63 (238)
T ss_dssp             EEEEETTTTEEE-EEEEC-SSSCSSEEETEEEETTE-EEEEE------------------TTSEEEEEETTTSEEEEEEE
T ss_pred             EEEEECCCCCEE-EEEEC-CCCCCCccceEEEeCCE-EEEEc------------------CCCEEEEEECCCCCEEEEee
Confidence            667777666642 21111 11111222124445665 99985                  27889999998887654332


Q ss_pred             CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC----CCCeeEECCCCCEEEEEecCCccceeee
Q 046018          150 GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG----FPDNVRSNSNGEFWVALHAKKGLFGKLI  225 (310)
Q Consensus       150 ~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~p~~i~~d~~G~l~va~~~~~~~~~~~i  225 (310)
                      ............+ ..+|+.. ..+.|+.+|...++..........+.    .+....++ .+.++++...+. +    .
T Consensus        64 ~~~~~~~~~~~~~-~~v~v~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~-l----~  135 (238)
T PF13360_consen   64 LPGPISGAPVVDG-GRVYVGT-SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGK-L----V  135 (238)
T ss_dssp             CSSCGGSGEEEET-TEEEEEE-TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSE-E----E
T ss_pred             ccccccceeeecc-ccccccc-ceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCc-E----E
Confidence            2111122122334 4488775 44599999966442211101111111    11223333 344666654433 2    3


Q ss_pred             eeccccccEEeeccchhhhh-----------cccccCCCCceEEEEECCCCCEEEEEEcCCCCe-----ecceeE-EEEe
Q 046018          226 LLNSWLGKTLLKLPLSFRQL-----------HSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKT-----LSFISE-VEEK  288 (310)
Q Consensus       226 ~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~-----~~~~~~-~~~~  288 (310)
                      ..+..+|+.+...+......           ..+.+. .+  .+...+.++.++.. ....|..     ...... ....
T Consensus       136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~  211 (238)
T PF13360_consen  136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVD  211 (238)
T ss_dssp             EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTTTEEEEEECSS-ECECEECC
T ss_pred             EEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCCCCEEEEecCCCccCCceee
Confidence            44457788876665532110           011111 11  23333444443333 2222321     111222 4456


Q ss_pred             CCEEEEecCCCCeEEEecc
Q 046018          289 DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       289 ~g~l~vgs~~~~~i~~~~~  307 (310)
                      ++.||+++ ....|..+|+
T Consensus       212 ~~~l~~~~-~~~~l~~~d~  229 (238)
T PF13360_consen  212 GGTLYVTS-SDGRLYALDL  229 (238)
T ss_dssp             CTEEEEEE-TTTEEEEEET
T ss_pred             CCEEEEEe-CCCEEEEEEC
Confidence            89999999 6899999886

...

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.88  E-value=0.0066  Score=51.13  Aligned_cols=112  Identities=13%  Similarity=0.115  Sum_probs=73.0

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....+|++++++..||.+... ..|..++.++.-++++.    ....+.|..|+...+|+ +.+++..            
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP----L~g~~DpE~Ieyig~n~-fvi~dER------------  148 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP----LTGFSDPETIEYIGGNQ-FVIVDER------------  148 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec----ccccCChhHeEEecCCE-EEEEehh------------
Confidence            457799999988888888766 35999999977655442    22356788899888887 7777743            


Q ss_pred             hcCCCCce--EEEEeCCCCeEEE------EecC---CcccceEEEecCCCeEEEEecCCc-eEEEEE
Q 046018          126 LSGDKTGR--LLKYEKTTKEVTI------LLQG---LAFANGVALSRDRTFILIAETSNC-RILRFW  180 (310)
Q Consensus       126 ~~~~~~g~--v~~~d~~~~~~~~------~~~~---~~~~~gi~~~~d~~~lyv~~~~~~-~i~~~~  180 (310)
                           ...  ++.+|+++.....      +...   ..+=.|+|++|..++||++-..+. +|+.++
T Consensus       149 -----~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         149 -----DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             -----cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence                 344  4455665432221      1111   122359999999888999855432 565555

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.83  E-value=0.0015  Score=53.16  Aligned_cols=144  Identities=15%  Similarity=0.136  Sum_probs=85.9

Q ss_pred             ceeceEEEeCCCCcEEEEECCC---------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL---------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ  117 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~---------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~  117 (310)
                      .+...-.+|| +|+-|.+.+..         |..+.+.-+.++..+...     ...+|+++.|.+.+.+|+.++.    
T Consensus       109 nR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~-----v~IsNgl~Wd~d~K~fY~iDsl----  178 (310)
T KOG4499|consen  109 NRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC-----VGISNGLAWDSDAKKFYYIDSL----  178 (310)
T ss_pred             cccccCccCC-CCceeeeeeccccccccccccEEEEeccCCCceeeehh-----ccCCccccccccCcEEEEEccC----
Confidence            3444556788 89989888752         222222222333333221     2358999999998889999864    


Q ss_pred             hhhhhhhhhcCCCCceE--EEEeCCCCeEEE---E---e----cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC
Q 046018          118 RRQFMSSILSGDKTGRL--LKYEKTTKEVTI---L---L----QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN  185 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v--~~~d~~~~~~~~---~---~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~  185 (310)
                                   +-.|  +.||..+|.+..   +   .    .....|.|++++.+|+ |||+-...++|.++|+.+++
T Consensus       179 -------------n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  179 -------------NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGK  244 (310)
T ss_pred             -------------ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCc
Confidence                         3345  444555554321   1   1    1234689999999887 99998888999999987543


Q ss_pred             CCcceeeeeCC-CCCCeeEECCCC--CEEEEEecC
Q 046018          186 SGKQDVFAELP-GFPDNVRSNSNG--EFWVALHAK  217 (310)
Q Consensus       186 ~~~~~~~~~~~-~~p~~i~~d~~G--~l~va~~~~  217 (310)
                      .- .+.  .+| ......|+-..+  -+|+.+...
T Consensus       245 ~L-~ei--klPt~qitsccFgGkn~d~~yvT~aa~  276 (310)
T KOG4499|consen  245 IL-LEI--KLPTPQITSCCFGGKNLDILYVTTAAK  276 (310)
T ss_pred             EE-EEE--EcCCCceEEEEecCCCccEEEEEehhc
Confidence            21 111  122 123556665442  466665543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.82  E-value=0.013  Score=51.75  Aligned_cols=143  Identities=10%  Similarity=0.085  Sum_probs=86.6

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....++...+ .|.-++.....+-+.| |.+++.. +...+.   .........+++|||. |+.+..            
T Consensus       304 ~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHpDgL-ifgtgt------------  366 (506)
T KOG0289|consen  304 EPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHPDGL-IFGTGT------------  366 (506)
T ss_pred             ccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcCCce-EEeccC------------
Confidence            4456888888 7765555555554444 6666653 222221   1223467789999997 877653            


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC-CCCCee
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP-GFPDNV  202 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~i  202 (310)
                           .++.|-.||.+++....-.++... ...|.|+.+|=+| ++....++|..||++..  .....+.... .....+
T Consensus       367 -----~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~L-at~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~  438 (506)
T KOG0289|consen  367 -----PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL-ATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSL  438 (506)
T ss_pred             -----CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEE-EEEecCCeEEEEEehhh--cccceeeccccccceeE
Confidence                 378888999887653322223323 3679999766444 44466777999998732  1222222111 234678


Q ss_pred             EECCCCCEEEEE
Q 046018          203 RSNSNGEFWVAL  214 (310)
Q Consensus       203 ~~d~~G~l~va~  214 (310)
                      .+|..|.+.+..
T Consensus       439 ~fD~SGt~L~~~  450 (506)
T KOG0289|consen  439 SFDQSGTYLGIA  450 (506)
T ss_pred             EEcCCCCeEEee
Confidence            999999766655

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.82  E-value=0.002  Score=52.24  Aligned_cols=115  Identities=12%  Similarity=0.111  Sum_probs=71.8

Q ss_pred             ceeceEEEeCCCCcEEEEECC--CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY--LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      +..+.++++|++.++.+....  ..|..+|.+...+..+       +....|.|..+|+|+++.++..+           
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~-------~~~~~n~i~wsP~G~~l~~~g~~-----------  121 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF-------GTQPRNTISWSPDGRFLVLAGFG-----------  121 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee-------cCCCceEEEECCCCCEEEEEEcc-----------
Confidence            347899999933344444322  3477788874433222       11356789999999966655522           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC-----CceEEEEEccCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS-----NCRILRFWLHGP  184 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~~  184 (310)
                          ...|.|..||.++.+... .........++++|||+++..+.+.     ++.+.+|+..|.
T Consensus       122 ----n~~G~l~~wd~~~~~~i~-~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  122 ----NLNGDLEFWDVRKKKKIS-TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             ----CCCcEEEEEECCCCEEee-ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence                235789999987543322 2233446789999999987766542     456666666543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.82  E-value=0.012  Score=49.37  Aligned_cols=157  Identities=10%  Similarity=0.042  Sum_probs=98.8

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      -..+-. ++.|.-+....-...+|.++++.+......    ...+..+.+.| +++ .||+..-                
T Consensus       150 cC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH----~gDV~slsl~p~~~n-tFvSg~c----------------  207 (343)
T KOG0286|consen  150 CCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGH----TGDVMSLSLSPSDGN-TFVSGGC----------------  207 (343)
T ss_pred             EEEEcC-CCceEecCCCceEEEEEcccceEEEEecCC----cccEEEEecCCCCCC-eEEeccc----------------
Confidence            344434 555554433334667788888765443321    12355677788 888 8887643                


Q ss_pred             CCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--CCCCeeEECC
Q 046018          130 KTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP--GFPDNVRSNS  206 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~  206 (310)
                       +..-..||...+.... +.......|.+.|.|+|. -+++.+.+.....||+....  +...+...+  .....++++.
T Consensus       208 -D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  208 -DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             -ccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEcc
Confidence             5567778876665544 433445689999999997 78888888999999987531  223333211  2347799999


Q ss_pred             CCCEEEEEecCCccceeeeeeccccccEEee
Q 046018          207 NGEFWVALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       207 ~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                      .|+|..+.+....+    ...+.-.++....
T Consensus       284 SGRlLfagy~d~~c----~vWDtlk~e~vg~  310 (343)
T KOG0286|consen  284 SGRLLFAGYDDFTC----NVWDTLKGERVGV  310 (343)
T ss_pred             cccEEEeeecCCce----eEeeccccceEEE
Confidence            99999887766553    3334444554443

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.80  E-value=0.00046  Score=64.24  Aligned_cols=119  Identities=18%  Similarity=0.302  Sum_probs=77.4

Q ss_pred             ccceeceEEEeCCCCcEEEEECC-C-------------------ceEEEeCCCC-------eEEEEEeecC---------
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY-L-------------------GFQVVGPEGG-------LATQLVTEAA---------   88 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~-~-------------------gi~~~d~~~~-------~~~~~~~~~~---------   88 (310)
                      ...+|.++.+++.+++||++... .                   .|++++++..       .+..+.....         
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            45789999999988999999632 1                   3999987765       4433333211         


Q ss_pred             ----CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce-----------EEEEeCCCCeEEEEecCC--
Q 046018           89 ----GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR-----------LLKYEKTTKEVTILLQGL--  151 (310)
Q Consensus        89 ----~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~-----------v~~~d~~~~~~~~~~~~~--  151 (310)
                          ...+..|-.|+++++|+ |||+.........     +......|.           +...++.+++++.+....  
T Consensus       428 ~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~-----l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~g  501 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNN-----LPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNG  501 (524)
T ss_pred             CcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcc-----cccccccCceeeeeecccceeeeccccccceeeeccCCCC
Confidence                23466899999999999 9999865321100     000011121           445567777777765433  


Q ss_pred             cccceEEEecCCCeEEEE
Q 046018          152 AFANGVALSRDRTFILIA  169 (310)
Q Consensus       152 ~~~~gi~~~~d~~~lyv~  169 (310)
                      ...-|++++||++.||+.
T Consensus       502 aE~tG~~fspDg~tlFvn  519 (524)
T PF05787_consen  502 AEITGPCFSPDGRTLFVN  519 (524)
T ss_pred             cccccceECCCCCEEEEE
Confidence            335699999999999885

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.74  E-value=0.0042  Score=50.91  Aligned_cols=178  Identities=12%  Similarity=0.099  Sum_probs=102.7

Q ss_pred             EeCCCCC-eEEEEEeccccccccCCCCCccccccceece---EEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCC
Q 046018           14 WQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLG---IRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAG   89 (310)
Q Consensus        14 ~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g---l~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~   89 (310)
                      ++.|+.. .+++....+..+|...+..+. ....+++.+   +.+-..+..+.-+.....|..+|..++...+-...   
T Consensus       108 f~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~---  183 (334)
T KOG0278|consen  108 FSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF---  183 (334)
T ss_pred             ecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec---
Confidence            4455544 343333333345666655333 333344443   33444255555443334588889988865433221   


Q ss_pred             ccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEE
Q 046018           90 QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIA  169 (310)
Q Consensus        90 ~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~  169 (310)
                        -..++++.++++|+ +.....                  .+.|..||+++-....-..-.-..+.-.+.|+.. .||+
T Consensus       184 --~s~VtSlEvs~dG~-ilTia~------------------gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~-~fVa  241 (334)
T KOG0278|consen  184 --NSPVTSLEVSQDGR-ILTIAY------------------GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE-FFVA  241 (334)
T ss_pred             --CCCCcceeeccCCC-EEEEec------------------CceeEEeccccccceeeccCccccccccccCCCc-eEEe
Confidence              13578899999999 444431                  4568889986532221111122234556788875 8998


Q ss_pred             ecCCceEEEEEccCCCCCcceee-eeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          170 ETSNCRILRFWLHGPNSGKQDVF-AELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      .-....+++||.+++.  +...+ ..-++-...+.+.|+|.+|.+....+.
T Consensus       242 Gged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  242 GGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             cCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence            7777899999988542  12222 112233477899999999988777665

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=97.74  E-value=0.0078  Score=49.66  Aligned_cols=159  Identities=8%  Similarity=0.104  Sum_probs=87.8

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      ..++..|+++.+.+++....|..+|.++.+..   ..  .......+.++..-+++ +++.+.+                
T Consensus       110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~---~~--~~~~~e~ne~~w~~~nd-~Fflt~G----------------  167 (313)
T KOG1407|consen  110 INITWSPDGEYIAVGNKDDRITFIDARTYKIV---NE--EQFKFEVNEISWNNSND-LFFLTNG----------------  167 (313)
T ss_pred             eEEEEcCCCCEEEEecCcccEEEEEeccccee---eh--hcccceeeeeeecCCCC-EEEEecC----------------
Confidence            35666663444444444455666666654322   11  11123567788887788 6666633                


Q ss_pred             CCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEEC
Q 046018          130 KTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRSN  205 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d  205 (310)
                       .|.|-.+.--  .++++..-   ...--.|.|+|+|+++-+. +....+..||++.  +-..+.+..+. +| .-+.++
T Consensus       168 -lG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~G-sADAlvSLWD~~E--LiC~R~isRld-wpVRTlSFS  240 (313)
T KOG1407|consen  168 -LGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATG-SADALVSLWDVDE--LICERCISRLD-WPVRTLSFS  240 (313)
T ss_pred             -CceEEEEecc--ccccccccccCCcceEEEEECCCCceEeec-cccceeeccChhH--hhhheeecccc-CceEEEEec
Confidence             4544333211  23332211   1222367889999954443 4556777778763  22223333332 33 678999


Q ss_pred             CCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          206 SNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       206 ~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      -+|++..+....+-+    =..+-++|..+.+++..
T Consensus       241 ~dg~~lASaSEDh~I----DIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  241 HDGRMLASASEDHFI----DIAEVETGDRVWEIPCE  272 (313)
T ss_pred             cCcceeeccCccceE----EeEecccCCeEEEeecc
Confidence            999988777766631    12345788888887654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.74  E-value=0.0017  Score=56.69  Aligned_cols=150  Identities=15%  Similarity=0.126  Sum_probs=95.1

Q ss_pred             ccccccceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           41 DIEHICGRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        41 ~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      .++....+...++++| +|+...+...+.-+++ |.++++.- +...   .-.....++++.+||. |..+...      
T Consensus       256 ~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El-L~QE---GHs~~v~~iaf~~DGS-L~~tGGl------  323 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL-LLQE---GHSKGVFSIAFQPDGS-LAATGGL------  323 (459)
T ss_pred             hhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh-Hhhc---ccccccceeEecCCCc-eeeccCc------
Confidence            3444556777899999 8886666655444433 77765432 2122   1223578999999999 7776532      


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP--  196 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--  196 (310)
                                 +..-..||..+|+...+..+. ....+++|+|.|- .+.+.+..+...+||+.....     +...|  
T Consensus       324 -----------D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~-----ly~ipAH  386 (459)
T KOG0272|consen  324 -----------DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSE-----LYTIPAH  386 (459)
T ss_pred             -----------cchhheeecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccccc-----ceecccc
Confidence                       222345787788877665543 4467999999986 667777788888888764311     22223  


Q ss_pred             -CCCCeeEECC-CCCEEEEEecCCc
Q 046018          197 -GFPDNVRSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       197 -~~p~~i~~d~-~G~l~va~~~~~~  219 (310)
                       .....+++++ .|.+.++....+.
T Consensus       387 ~nlVS~Vk~~p~~g~fL~TasyD~t  411 (459)
T KOG0272|consen  387 SNLVSQVKYSPQEGYFLVTASYDNT  411 (459)
T ss_pred             cchhhheEecccCCeEEEEcccCcc
Confidence             2346788887 5666666555443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.73  E-value=0.0014  Score=61.35  Aligned_cols=173  Identities=12%  Similarity=0.134  Sum_probs=103.5

Q ss_pred             CcccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceec-eEEEeCCCCcEEEEECC-CceEEE-eCCC
Q 046018            2 PYTGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPL-GIRFDKKTGDLYIADAY-LGFQVV-GPEG   77 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gl~~d~~~g~l~v~~~~-~gi~~~-d~~~   77 (310)
                      +++...|..|+.|+-+... -|.          +++         ...|. .+.+.| .| .|+++.. ++..++ ..+.
T Consensus       466 LlScSED~svRLWsl~t~s~~V~----------y~G---------H~~PVwdV~F~P-~G-yYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  466 LLSCSEDSSVRLWSLDTWSCLVI----------YKG---------HLAPVWDVQFAP-RG-YYFATASHDQTARLWSTDH  524 (707)
T ss_pred             eeeccCCcceeeeecccceeEEE----------ecC---------CCcceeeEEecC-Cc-eEEEecCCCceeeeeeccc
Confidence            4566667777777776631 111          111         12333 355666 55 4555443 444443 2222


Q ss_pred             CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ce
Q 046018           78 GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NG  156 (310)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~g  156 (310)
                      ....++..    ........+.++|+.+  |+++.+                .+.+|..||..+|...++..+...| ..
T Consensus       525 ~~PlRifa----ghlsDV~cv~FHPNs~--Y~aTGS----------------sD~tVRlWDv~~G~~VRiF~GH~~~V~a  582 (707)
T KOG0263|consen  525 NKPLRIFA----GHLSDVDCVSFHPNSN--YVATGS----------------SDRTVRLWDVSTGNSVRIFTGHKGPVTA  582 (707)
T ss_pred             CCchhhhc----ccccccceEEECCccc--ccccCC----------------CCceEEEEEcCCCcEEEEecCCCCceEE
Confidence            22112211    1234567789999987  444322                3667999999888777766665554 78


Q ss_pred             EEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCcc
Q 046018          157 VALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       157 i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                      ++++|+|++|- +....+.|..||..++..  ...+..-.+....+.++.+|++.++...++.+
T Consensus       583 l~~Sp~Gr~La-Sg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV  643 (707)
T KOG0263|consen  583 LAFSPCGRYLA-SGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSV  643 (707)
T ss_pred             EEEcCCCceEe-ecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence            99999998544 445678999999875421  11111113455789999999999998877763

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.72  E-value=0.0029  Score=55.27  Aligned_cols=148  Identities=9%  Similarity=0.012  Sum_probs=95.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....|.++|++..|..+....-+..+|.+++...+....  + ....+.+.+.-|||.+ +|+.+              
T Consensus       270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~--~-~~~S~~sc~W~pDg~~-~V~Gs--------------  331 (519)
T KOG0293|consen  270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS--G-LGFSVSSCAWCPDGFR-FVTGS--------------  331 (519)
T ss_pred             CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc--C-cCCCcceeEEccCCce-eEecC--------------
Confidence            4455789999665565554444578889999876554433  2 2345777888899984 44443              


Q ss_pred             cCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                         .+..++.||.++....... ...+....+++++||+.++... .+..|..|+.....  ....... ......+.++
T Consensus       332 ---~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~--dr~lise-~~~its~~iS  404 (519)
T KOG0293|consen  332 ---PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARV--DRGLISE-EQPITSFSIS  404 (519)
T ss_pred             ---CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhh--hhccccc-cCceeEEEEc
Confidence               3677999998754332211 1223457899999999888774 56788888765321  1111111 1123678899


Q ss_pred             CCCCEEEEEecCCc
Q 046018          206 SNGEFWVALHAKKG  219 (310)
Q Consensus       206 ~~G~l~va~~~~~~  219 (310)
                      .+|.+.+.+.....
T Consensus       405 ~d~k~~LvnL~~qe  418 (519)
T KOG0293|consen  405 KDGKLALVNLQDQE  418 (519)
T ss_pred             CCCcEEEEEcccCe
Confidence            99998888877665

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.72  E-value=0.03  Score=49.59  Aligned_cols=119  Identities=6%  Similarity=-0.037  Sum_probs=60.3

Q ss_pred             cccccccCCCCCcccccc-ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEE
Q 046018           29 SQRKECVRPFAPDIEHIC-GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVI  107 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l  107 (310)
                      ++.+|..+....++.... ....|..+++++..||.......|.++|.++.+.+.+...+.+-.  .-...++..+++ .
T Consensus        62 ly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~--g~gt~v~n~d~t-~  138 (386)
T PF14583_consen   62 LYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK--GYGTWVANSDCT-K  138 (386)
T ss_dssp             EEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE--EEEEEEE-TTSS-E
T ss_pred             eEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc--cccceeeCCCcc-E
Confidence            555566553323332222 122356667756677655555679999999988777766533221  112234466787 6


Q ss_pred             EEEeCC--Cchh---hhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC
Q 046018          108 YFTDSS--TSFQ---RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG  150 (310)
Q Consensus       108 ~v~~~~--~~~~---~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~  150 (310)
                      ++....  ..|.   ...++.+++......+|+.+|.++|+.+++...
T Consensus       139 ~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~  186 (386)
T PF14583_consen  139 LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED  186 (386)
T ss_dssp             EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred             EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence            665422  1221   133556667777888999999999998877543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.70  E-value=0.028  Score=48.92  Aligned_cols=110  Identities=13%  Similarity=0.161  Sum_probs=60.7

Q ss_pred             eceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEE-----eCCCCEEEEEeCCCchhhhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDI-----DEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~-----d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..-++++| +|+..+.....| |..+||++++.  +.....+- ...+.+++.     +|..+ .+++.+          
T Consensus       160 VlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~--~g~~l~gH-~K~It~Lawep~hl~p~~r-~las~s----------  224 (480)
T KOG0271|consen  160 VLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQ--IGRALRGH-KKWITALAWEPLHLVPPCR-RLASSS----------  224 (480)
T ss_pred             EEEEEECC-CcchhhccccCCeEEEecCCCCCc--ccccccCc-ccceeEEeecccccCCCcc-ceeccc----------
Confidence            44688899 877655544444 88899988863  32222111 113445553     34555 444443          


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                             ++|.+..||...++......+...| ..+.+.-+|  ++++.+..++|.+|+..
T Consensus       225 -------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~  276 (480)
T KOG0271|consen  225 -------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRAL  276 (480)
T ss_pred             -------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEcc
Confidence                   3777888887666555444333332 345554333  44445666666666654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.70  E-value=0.0017  Score=58.03  Aligned_cols=143  Identities=11%  Similarity=0.146  Sum_probs=88.4

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      .++++.....+|.+. .++|-++|.....- .++.......+.++++.....+||+.|.++..                 
T Consensus       424 AvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-----------------  485 (705)
T KOG0639|consen  424 AVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-----------------  485 (705)
T ss_pred             EEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-----------------
Confidence            444544233344332 23465666543211 12222222335568889999999997777652                 


Q ss_pred             CCceEEEEeCCCCeEEEEec---CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe---eE
Q 046018          130 KTGRLLKYEKTTKEVTILLQ---GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN---VR  203 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~---~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~---i~  203 (310)
                       ...|..||......++-.+   ....-..++++||.+ |.++...++.|.+||+..+     ..+.+++|.+||   |.
T Consensus       486 -astlsiWDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq-----~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  486 -ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQ-----TLVRQFQGHTDGASCID  558 (705)
T ss_pred             -cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccc-----eeeecccCCCCCceeEE
Confidence             4568889987654443221   112235688999998 6666678899999997643     445566777776   67


Q ss_pred             ECCCC-CEEEEEecCC
Q 046018          204 SNSNG-EFWVALHAKK  218 (310)
Q Consensus       204 ~d~~G-~l~va~~~~~  218 (310)
                      +.++| +||.+..++.
T Consensus       559 is~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  559 ISKDGTKLWTGGLDNT  574 (705)
T ss_pred             ecCCCceeecCCCccc
Confidence            78889 8999877654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=97.69  E-value=0.011  Score=48.80  Aligned_cols=148  Identities=10%  Similarity=0.067  Sum_probs=91.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCc-cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQ-PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      +..+.+++.. +|.=.+....+ -+..++.+..++.   ...... .......++.+|...-++++.++           
T Consensus        21 ~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~---~~~~~~gh~~svdql~w~~~~~d~~atas~-----------   85 (313)
T KOG1407|consen   21 QKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFR---KELVYRGHTDSVDQLCWDPKHPDLFATASG-----------   85 (313)
T ss_pred             hcceEEEEcc-cCceeeecccCCceEEEEecchhhh---hhhcccCCCcchhhheeCCCCCcceEEecC-----------
Confidence            5667888888 66544444433 3444444433221   111111 11246778888765547777654           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                            +..+.+||...++..........-.-|+++|+|+++.+. ...+.|..+|...-+..+.   .+.+-..+.++.
T Consensus        86 ------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~-~kdD~it~id~r~~~~~~~---~~~~~e~ne~~w  155 (313)
T KOG1407|consen   86 ------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVG-NKDDRITFIDARTYKIVNE---EQFKFEVNEISW  155 (313)
T ss_pred             ------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEe-cCcccEEEEEecccceeeh---hcccceeeeeee
Confidence                  556888987666665544444556679999999977766 4567888888653211110   112334578888


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      ..++++++.+++.++
T Consensus       156 ~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen  156 NNSNDLFFLTNGLGC  170 (313)
T ss_pred             cCCCCEEEEecCCce
Confidence            888999999998776

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=97.69  E-value=0.0065  Score=52.25  Aligned_cols=199  Identities=13%  Similarity=0.053  Sum_probs=117.9

Q ss_pred             CcEEEEEeCCCCC-eE--EEEEeccccccccCCCCCcccc-ccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEE
Q 046018            8 DGRILKWQGDELG-WT--EFAVTTSQRKECVRPFAPDIEH-ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQL   83 (310)
Q Consensus         8 ~~~i~~~~~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~   83 (310)
                      -+.|++.+.|+.+ |+  +..+.++..+|.++.+...... ......|+++++..-.||-+.....|-.+|.+.+++.+ 
T Consensus       151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR-  229 (460)
T KOG0285|consen  151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR-  229 (460)
T ss_pred             cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH-
Confidence            3589999998888 84  3445666667887744322221 22456699999866677777666668889998876532 


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEec-
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSR-  161 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~-  161 (310)
                        .+.+ -+.....+...|.-+ +.++...                 +..+..||..+..-.....+...| ..+...| 
T Consensus       230 --~YhG-HlS~V~~L~lhPTld-vl~t~gr-----------------Dst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  230 --HYHG-HLSGVYCLDLHPTLD-VLVTGGR-----------------DSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             --Hhcc-ccceeEEEeccccce-eEEecCC-----------------cceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence              2222 233566777888777 6666532                 556777887655433334444444 3343333 


Q ss_pred             CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018          162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL  238 (310)
Q Consensus       162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~  238 (310)
                      |.+ +| +.+.+..|..||...++.  ...+..-......++..|+-+++.+...++      +..+. +.|.+++.+
T Consensus       289 dpq-vi-t~S~D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~dn------ik~w~~p~g~f~~nl  356 (460)
T KOG0285|consen  289 DPQ-VI-TGSHDSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPDN------IKQWKLPEGEFLQNL  356 (460)
T ss_pred             CCc-eE-EecCCceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCcc------ceeccCCccchhhcc
Confidence            555 44 557788999999875422  111111122346677777777776655544      44433 566666554

>PTZ00420 coronin; Provisional

Probab=97.68  E-value=0.05  Score=51.31  Aligned_cols=120  Identities=10%  Similarity=0.044  Sum_probs=75.6

Q ss_pred             CCcceEEeCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE--E-------EEecCCcccceEEEecCC
Q 046018           94 FTNDLDIDEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV--T-------ILLQGLAFANGVALSRDR  163 (310)
Q Consensus        94 ~~~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--~-------~~~~~~~~~~gi~~~~d~  163 (310)
                      .+.+++++|+ ++ +.++.+.                 ++.|..||..++..  .       .+.........++|+|++
T Consensus        76 ~V~~lafsP~~~~-lLASgS~-----------------DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g  137 (568)
T PTZ00420         76 SILDLQFNPCFSE-ILASGSE-----------------DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN  137 (568)
T ss_pred             CEEEEEEcCCCCC-EEEEEeC-----------------CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence            5788999996 66 6655533                 77888898754321  1       111112335789999998


Q ss_pred             CeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccccEEeecc
Q 046018          164 TFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKLP  239 (310)
Q Consensus       164 ~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~  239 (310)
                      ..++++...++.|.+||+..+..  ...+ ..+.....+.++++|++.++....+.     +..+ ...++.+..+.
T Consensus       138 ~~iLaSgS~DgtIrIWDl~tg~~--~~~i-~~~~~V~SlswspdG~lLat~s~D~~-----IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        138 YYIMCSSGFDSFVNIWDIENEKR--AFQI-NMPKKLSSLKWNIKGNLLSGTCVGKH-----MHIIDPRKQEIASSFH  206 (568)
T ss_pred             CeEEEEEeCCCeEEEEECCCCcE--EEEE-ecCCcEEEEEECCCCCEEEEEecCCE-----EEEEECCCCcEEEEEe
Confidence            86766667789999999875321  1111 12234578899999998887665554     3333 44555555443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.68  E-value=0.023  Score=47.27  Aligned_cols=146  Identities=14%  Similarity=0.199  Sum_probs=78.7

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecC--CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAA--GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL  135 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (310)
                      ++.||++.....++.+|..+++..--.....  ......+...+++  +..++++.                  ..+.|+
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~g~l~  135 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGT------------------SSGKLV  135 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEE------------------TCSEEE
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEe------------------ccCcEE
Confidence            6789999866679999988887532211211  1112223334444  44488776                  267899


Q ss_pred             EEeCCCCeEEEEecCCccc------------ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          136 KYEKTTKEVTILLQGLAFA------------NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       136 ~~d~~~~~~~~~~~~~~~~------------~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                      .+|+++|+....... ..+            .+-.+..++ .+|++. .++.+..+|...+.    ..+......+....
T Consensus       136 ~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~g~~~~~d~~tg~----~~w~~~~~~~~~~~  208 (238)
T PF13360_consen  136 ALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG-RVYVSS-GDGRVVAVDLATGE----KLWSKPISGIYSLP  208 (238)
T ss_dssp             EEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT-EEEEEC-CTSSEEEEETTTTE----EEEEECSS-ECECE
T ss_pred             EEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC-EEEEEc-CCCeEEEEECCCCC----EEEEecCCCccCCc
Confidence            999999977543322 111            122222244 688874 44556666766432    22422222334434


Q ss_pred             ECCCCCEEEEEecCCccceeeeeeccccccEE
Q 046018          204 SNSNGEFWVALHAKKGLFGKLILLNSWLGKTL  235 (310)
Q Consensus       204 ~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~  235 (310)
                      ...++.||+++ ..+.+    ...+..+|+.+
T Consensus       209 ~~~~~~l~~~~-~~~~l----~~~d~~tG~~~  235 (238)
T PF13360_consen  209 SVDGGTLYVTS-SDGRL----YALDLKTGKVV  235 (238)
T ss_dssp             ECCCTEEEEEE-TTTEE----EEEETTTTEEE
T ss_pred             eeeCCEEEEEe-CCCEE----EEEECCCCCEE
Confidence            55667888888 44432    33344555554

...

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.65  E-value=9.5e-05  Score=39.38  Aligned_cols=27  Identities=33%  Similarity=0.652  Sum_probs=24.1

Q ss_pred             cccceEEEecCCCeEEEEecCCceEEEE
Q 046018          152 AFANGVALSRDRTFILIAETSNCRILRF  179 (310)
Q Consensus       152 ~~~~gi~~~~d~~~lyv~~~~~~~i~~~  179 (310)
                      ..|.||+++++|+ +||+|+.+++|.+|
T Consensus         2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            4699999998876 99999999999886

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.65  E-value=0.012  Score=55.21  Aligned_cols=105  Identities=10%  Similarity=0.026  Sum_probs=56.1

Q ss_pred             cEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEe--CCCCEEEEEeCCCchh---hhhhhhhhhcCCCCce
Q 046018           60 DLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID--EHKGVIYFTDSSTSFQ---RRQFMSSILSGDKTGR  133 (310)
Q Consensus        60 ~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d--~~g~~l~v~~~~~~~~---~~~~~~~~~~~~~~g~  133 (310)
                      .||+-+.. .+|.|++.+.-+...+...+..   ....++++.  |+-.+++.... ..-.   ..+.+ .. .....+.
T Consensus       143 ~~findk~n~Rvari~l~~~~~~~i~~iPn~---~~~Hg~~~~~~p~t~yv~~~~e-~~~PlpnDGk~l-~~-~~ey~~~  216 (635)
T PRK02888        143 YLFINDKANTRVARIRLDVMKCDKITELPNV---QGIHGLRPQKIPRTGYVFCNGE-FRIPLPNDGKDL-DD-PKKYRSL  216 (635)
T ss_pred             EEEEecCCCcceEEEECccEeeceeEeCCCc---cCccccCccccCCccEEEeCcc-cccccCCCCCEe-ec-ccceeEE
Confidence            36777665 4699999887777666554321   122333332  33332222211 0000   00000 00 1223566


Q ss_pred             EEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEe
Q 046018          134 LLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus       134 v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~  170 (310)
                      +..+|.++-+..........|..+++++||+++|++.
T Consensus       217 vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTs  253 (635)
T PRK02888        217 FTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTC  253 (635)
T ss_pred             EEEEECccceEEEEEEeCCCcccceECCCCCEEEEec
Confidence            7888987644433222344789999999999999985

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.64  E-value=0.0084  Score=53.82  Aligned_cols=143  Identities=12%  Similarity=0.130  Sum_probs=89.0

Q ss_pred             eeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ...|++..+ +..+|++..+.+ +..++  ..++. +......    ....+.++|.|. +-++.               
T Consensus       370 elwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~-wt~~~~d----~~~~~~fhpsg~-va~Gt---------------  425 (626)
T KOG2106|consen  370 ELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLE-WTKIIED----PAECADFHPSGV-VAVGT---------------  425 (626)
T ss_pred             ceeeEEcCC-ChhheeeccCcceEEEcc--CCcee-EEEEecC----ceeEeeccCcce-EEEee---------------
Confidence            345788887 666677666655 33444  22221 1111111    245677888885 77766               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEEC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRSN  205 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d  205 (310)
                         .+|+.+.+|.++.....+......-+.+.++|||.+|-+. +.++.||+|..+.... ....+..-.+.| ..+.++
T Consensus       426 ---~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg-s~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS  500 (626)
T KOG2106|consen  426 ---ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG-SHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWS  500 (626)
T ss_pred             ---ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe-cCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeec
Confidence               4788999999876666555565566899999999976665 6778999998763211 111121111222 557778


Q ss_pred             CCCCEEEEEecCCc
Q 046018          206 SNGEFWVALHAKKG  219 (310)
Q Consensus       206 ~~G~l~va~~~~~~  219 (310)
                      +|++..++...+-.
T Consensus       501 ~Ds~~~~~~S~d~e  514 (626)
T KOG2106|consen  501 SDSQFLVSNSGDYE  514 (626)
T ss_pred             CCCceEEeccCceE
Confidence            88888887766554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.63  E-value=0.075  Score=52.80  Aligned_cols=148  Identities=10%  Similarity=0.079  Sum_probs=85.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEe-CCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDID-EHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .....+++++.++.++++....+ |..+|..++........     ...+..+.+. ++|. .+++..            
T Consensus       576 ~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~-~latgs------------  637 (793)
T PLN00181        576 KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGR-SLAFGS------------  637 (793)
T ss_pred             CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCC-EEEEEe------------
Confidence            45668889864667666666555 77788877654322221     1134556664 5677 555443            


Q ss_pred             hhcCCCCceEEEEeCCCCeE--EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCC----CcceeeeeCCCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEV--TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNS----GKQDVFAELPGF  198 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~  198 (310)
                           .++.|..||..+.+.  ..+.........+.+. ++. .+++.+.++.|..||+.....    .....+......
T Consensus       638 -----~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~  710 (793)
T PLN00181        638 -----ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV  710 (793)
T ss_pred             -----CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence                 378899999865432  2222122234567776 666 445556778999999863211    111112111223


Q ss_pred             CCeeEECCCCCEEEEEecCCc
Q 046018          199 PDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ...+.++++|.+.++....+.
T Consensus       711 i~~v~~s~~~~~lasgs~D~~  731 (793)
T PLN00181        711 KNFVGLSVSDGYIATGSETNE  731 (793)
T ss_pred             eeEEEEcCCCCEEEEEeCCCE
Confidence            456889999987766665554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.59  E-value=0.041  Score=49.10  Aligned_cols=145  Identities=12%  Similarity=0.139  Sum_probs=93.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....+|+++. +|.+.++....|..|+ +..++.+..+ ...+++    +..+....+|++|.-+.              
T Consensus       236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~l~~tl-~~HkgP----I~slKWnk~G~yilS~~--------------  295 (524)
T KOG0273|consen  236 KDVTSLDWNN-DGTLLATGSEDGEARIWNKDGNLISTL-GQHKGP----IFSLKWNKKGTYILSGG--------------  295 (524)
T ss_pred             CCcceEEecC-CCCeEEEeecCcEEEEEecCchhhhhh-hccCCc----eEEEEEcCCCCEEEecc--------------
Confidence            4567899998 8999998888885544 6665543333 221221    45677888888333332              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          .+++...||..++..+...+-...| -.+.|-.+..  +++....++|+++..+...  ....+..-.+....|.+
T Consensus       296 ----vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~--P~~t~~GH~g~V~alk~  367 (524)
T KOG0273|consen  296 ----VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDR--PVKTFIGHHGEVNALKW  367 (524)
T ss_pred             ----CCccEEEEeccCceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCCC--cceeeecccCceEEEEE
Confidence                4888999999888877655444445 4466654443  5666677899999876431  11222222345578999


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      ++.|.|..++.....
T Consensus       368 n~tg~LLaS~SdD~T  382 (524)
T KOG0273|consen  368 NPTGSLLASCSDDGT  382 (524)
T ss_pred             CCCCceEEEecCCCe
Confidence            999999888877665

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.57  E-value=0.032  Score=49.87  Aligned_cols=126  Identities=13%  Similarity=0.111  Sum_probs=71.7

Q ss_pred             cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE---EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCc-----hh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA---TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS-----FQ  117 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~-----~~  117 (310)
                      ...+.+++..  .+.+|+++.. .+.+++....++   ..+....+....+.-..|+++|||+ |||+.-...     +.
T Consensus       130 ~~~~~~~a~~--~~~~~~~n~~-~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~-Lyvs~G~~~~~~~aq~  205 (399)
T COG2133         130 RLVYFGISEP--GGGLYVANRV-AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGK-LYVTTGSNGDPALAQD  205 (399)
T ss_pred             ceeeeEEEee--cCCceEEEEE-EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCc-EEEEeCCCCCcccccC
Confidence            3456677764  3566777543 466666221222   2233322222356788999999998 999974420     00


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceE
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRI  176 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i  176 (310)
                      ......-++ ......++..|..+...++...+..+|.|++|+|..+.||.++.+.+.+
T Consensus       206 ~~~~~Gk~~-r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         206 NVSLAGKVL-RIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             cccccccee-eeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence            000000000 1112234445555555566677788899999999855599998877555

>PTZ00420 coronin; Provisional

Probab=97.56  E-value=0.049  Score=51.38  Aligned_cols=147  Identities=9%  Similarity=0.043  Sum_probs=81.2

Q ss_pred             ceeceEEEeCCCCc-EEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .....+++++ ++. ++++.... .|..+|.++++.......     ...+.+++++++|+ ++++...           
T Consensus       126 ~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-----~~~V~SlswspdG~-lLat~s~-----------  187 (568)
T PTZ00420        126 KKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRAFQINM-----PKKLSSLKWNIKGN-LLSGTCV-----------  187 (568)
T ss_pred             CcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEEEEEec-----CCcEEEEEECCCCC-EEEEEec-----------
Confidence            4566899998 554 44443433 477889887764322211     12467899999999 6666532           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCccc-ceE-----EEecCCCeEEEEecCC---ceEEEEEccCCCCCcceeeeeC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGV-----ALSRDRTFILIAETSN---CRILRFWLHGPNSGKQDVFAEL  195 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi-----~~~~d~~~lyv~~~~~---~~i~~~~~~~~~~~~~~~~~~~  195 (310)
                            ++.|..||+.+++........... ...     .+++|++++..+....   +.|.+||.+.... ....+ ..
T Consensus       188 ------D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~-~l  259 (568)
T PTZ00420        188 ------GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTM-SI  259 (568)
T ss_pred             ------CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEE-Ee
Confidence                  677999999877654322222211 111     2347877555543332   4799999873211 11111 12


Q ss_pred             CCCCCee--EECC-CCCEEEEEecCCc
Q 046018          196 PGFPDNV--RSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       196 ~~~p~~i--~~d~-~G~l~va~~~~~~  219 (310)
                      ...+..+  ..|+ +|.+|++..+.+.
T Consensus       260 d~~~~~L~p~~D~~tg~l~lsGkGD~t  286 (568)
T PTZ00420        260 DNASAPLIPHYDESTGLIYLIGKGDGN  286 (568)
T ss_pred             cCCccceEEeeeCCCCCEEEEEECCCe
Confidence            1222222  3344 4788877765554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=97.55  E-value=0.031  Score=47.18  Aligned_cols=112  Identities=11%  Similarity=0.047  Sum_probs=79.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....|.+++.++.|.|+...+.+..++.....+......  +.   -.-+.++.++-+ +|+++               
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~---plL~c~F~d~~~-~~~G~---------------   72 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GA---PLLDCAFADEST-IVTGG---------------   72 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CC---ceeeeeccCCce-EEEec---------------
Confidence            4556788888678899998776566666555444332222  11   133566667766 88876               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                         .+|.|.++|..++....+........+|...+... .+++.++.++|..||+..
T Consensus        73 ---~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   73 ---LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             ---cCceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence               48899999999887776666566677888887555 678889999999999874

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.54  E-value=0.026  Score=46.03  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=91.9

Q ss_pred             eceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ...++... ++.=+.+..+ ..++.+|.+++++.+-..   + -....|.+++..+.. +.++.+-              
T Consensus        62 VlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r---g-H~aqVNtV~fNeesS-Vv~Sgsf--------------  121 (307)
T KOG0316|consen   62 VLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFR---G-HLAQVNTVRFNEESS-VVASGSF--------------  121 (307)
T ss_pred             eeeccccc-cccccccCCCCceEEEEEcccCeeeeecc---c-ccceeeEEEecCcce-EEEeccc--------------
Confidence            33455555 3333333333 349999999997643222   1 233688899988887 7776543              


Q ss_pred             CCCCceEEEEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeE
Q 046018          128 GDKTGRLLKYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVR  203 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~  203 (310)
                         +..+..||=.+...+++.   +.......|.++   ++.+++.+..+++..||+.-+     +...+.-+.| ..+.
T Consensus       122 ---D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G-----~l~sDy~g~pit~vs  190 (307)
T KOG0316|consen  122 ---DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKG-----TLSSDYFGHPITSVS  190 (307)
T ss_pred             ---cceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecc-----eeehhhcCCcceeEE
Confidence               556777876555554432   222223334443   347788889999999998743     2222322334 7799


Q ss_pred             ECCCCCEEEEEecCCccceeeeeeccccccEEeec
Q 046018          204 SNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL  238 (310)
Q Consensus       204 ~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~  238 (310)
                      +.++|+.-.+..-+..+    -+.+..+|++++.+
T Consensus       191 ~s~d~nc~La~~l~stl----rLlDk~tGklL~sY  221 (307)
T KOG0316|consen  191 FSKDGNCSLASSLDSTL----RLLDKETGKLLKSY  221 (307)
T ss_pred             ecCCCCEEEEeecccee----eecccchhHHHHHh
Confidence            99999866655444431    24455677776554

>PTZ00421 coronin; Provisional

Probab=97.54  E-value=0.022  Score=53.00  Aligned_cols=120  Identities=11%  Similarity=0.087  Sum_probs=73.4

Q ss_pred             CCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE--------EEEecCCcccceEEEecCCC
Q 046018           94 FTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV--------TILLQGLAFANGVALSRDRT  164 (310)
Q Consensus        94 ~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--------~~~~~~~~~~~gi~~~~d~~  164 (310)
                      .+.+++++| +++ ++++.+.                 ++.|..||..++..        ..+.........++|+|++.
T Consensus        77 ~V~~v~fsP~d~~-~LaSgS~-----------------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~  138 (493)
T PTZ00421         77 PIIDVAFNPFDPQ-KLFTASE-----------------DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM  138 (493)
T ss_pred             CEEEEEEcCCCCC-EEEEEeC-----------------CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC
Confidence            468899999 777 5555432                 77888898754421        11211123356899999865


Q ss_pred             eEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccccEEeec
Q 046018          165 FILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKL  238 (310)
Q Consensus       165 ~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~  238 (310)
                      .++++...++.|.+||+..+..  ...+.........+++.++|++.++....+.     +..+ ...++.+..+
T Consensus       139 ~iLaSgs~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-----IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        139 NVLASAGADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-----LNIIDPRDGTIVSSV  206 (493)
T ss_pred             CEEEEEeCCCEEEEEECCCCeE--EEEEcCCCCceEEEEEECCCCEEEEecCCCE-----EEEEECCCCcEEEEE
Confidence            4666667788999999874311  1122112233467889999988777665554     3343 3455555443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.53  E-value=0.0082  Score=52.86  Aligned_cols=159  Identities=18%  Similarity=0.247  Sum_probs=88.2

Q ss_pred             ccceeceEEEeCCCCcEEEEECCCc------eEEEeCCC--C---eEEEE--Ee--ecCCccc----cCCcceEEeCCCC
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAYLG------FQVVGPEG--G---LATQL--VT--EAAGQPL----RFTNDLDIDEHKG  105 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~~g------i~~~d~~~--~---~~~~~--~~--~~~~~~~----~~~~~i~~d~~g~  105 (310)
                      ..+...||+.++.++++|+......      ++.+....  +   .++..  ..  ...+.+.    ..+.+|++.++|.
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            3467789999964778777766544      55554332  1   11111  00  0112222    2567999989998


Q ss_pred             EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE-EEE--ecCC-------------cccceEEEecCCCeEEEE
Q 046018          106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV-TIL--LQGL-------------AFANGVALSRDRTFILIA  169 (310)
Q Consensus       106 ~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~--~~~~-------------~~~~gi~~~~d~~~lyv~  169 (310)
                       +||++....-           ......|++++++ |+. +.+  ....             ....+|+++|||+.||++
T Consensus        98 -~~is~E~~~~-----------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   98 -FWISSEGGRT-----------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             -EEEEeCCccC-----------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence             9999865200           0012679999987 544 222  1111             123589999999988876


Q ss_pred             ecCC---------------ceEEEEEccCCCCCcceeeeeC--------CCCCCeeEECCCCCEEEEEec
Q 046018          170 ETSN---------------CRILRFWLHGPNSGKQDVFAEL--------PGFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       170 ~~~~---------------~~i~~~~~~~~~~~~~~~~~~~--------~~~p~~i~~d~~G~l~va~~~  216 (310)
                      ....               -+|+.|++........+..-.+        ...+..+..-++|+|+|-...
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~  234 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD  234 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence            5432               3577777653110011111111        123445666678888887765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.51  E-value=0.00088  Score=57.88  Aligned_cols=155  Identities=15%  Similarity=0.104  Sum_probs=93.2

Q ss_pred             eceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ..-+.++| +|...+...++- +..+|+++...  +... .+ -.+-.-.|+.+|||. ..++..               
T Consensus       118 Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp--~~t~-Kg-H~~WVlcvawsPDgk-~iASG~---------------  176 (480)
T KOG0271|consen  118 VLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETP--LFTC-KG-HKNWVLCVAWSPDGK-KIASGS---------------  176 (480)
T ss_pred             EEEEEecC-CCceEEecCCCceEEeeccCCCCc--ceee-cC-CccEEEEEEECCCcc-hhhccc---------------
Confidence            33677888 887777766644 55558776542  2222 11 123566788999998 554432               


Q ss_pred             CCCCceEEEEeCCCCeEEE--EecCCcccceEEEec-----CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC---
Q 046018          128 GDKTGRLLKYEKTTKEVTI--LLQGLAFANGVALSR-----DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG---  197 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~--~~~~~~~~~gi~~~~-----d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---  197 (310)
                        .+|.|..|||++|+..-  +..--....++++-|     +.+ ++++.+..+.+.+||...+     ..+..+.+   
T Consensus       177 --~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~-----~~~~~lsgHT~  248 (480)
T KOG0271|consen  177 --KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLG-----TCVRTLSGHTA  248 (480)
T ss_pred             --cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCc-----eEEEEeccCcc
Confidence              48999999999886542  211223356777766     444 6777788999999997632     22222222   


Q ss_pred             CCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018          198 FPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL  238 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~  238 (310)
                      ....+....+|.||-+..+..      |..+. .+|++...+
T Consensus       249 ~VTCvrwGG~gliySgS~Drt------Ikvw~a~dG~~~r~l  284 (480)
T KOG0271|consen  249 SVTCVRWGGEGLIYSGSQDRT------IKVWRALDGKLCREL  284 (480)
T ss_pred             ceEEEEEcCCceEEecCCCce------EEEEEccchhHHHhh
Confidence            224566677777777665544      44443 345554444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.50  E-value=0.13  Score=51.21  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             eeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....+++++..+...++....+ |..+|..+++.......    -...+.++++++ ++. ++++...            
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~----H~~~V~~l~~~p~~~~-~L~Sgs~------------  596 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE----HEKRVWSIDYSSADPT-LLASGSD------------  596 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC----CCCCEEEEEEcCCCCC-EEEEEcC------------
Confidence            3456777763445444444444 77778887654322211    112477899986 677 6666533            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec-CCCeEEEEecCCceEEEEEccC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR-DRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                           ++.|..||..++..............+.+.+ ++. ++++.+.++.|..||...
T Consensus       597 -----Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        597 -----DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             -----CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence                 7889999987665433222223445677754 566 555557788999999864

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.50  E-value=0.085  Score=49.24  Aligned_cols=190  Identities=15%  Similarity=0.125  Sum_probs=88.4

Q ss_pred             ceEEeCCCCEEEEEeCCC---chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-------cccceEEEe----cC
Q 046018           97 DLDIDEHKGVIYFTDSST---SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-------AFANGVALS----RD  162 (310)
Q Consensus        97 ~i~~d~~g~~l~v~~~~~---~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-------~~~~gi~~~----~d  162 (310)
                      ..++++.+.++|+.....   .|.....   .......+.|+.+|.++|+..-.....       ..+....+.    -+
T Consensus       221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~---~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~  297 (488)
T cd00216         221 SPTYDPKTNLVYVGTGNGSPWNWGGRRT---PGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD  297 (488)
T ss_pred             CeeEeCCCCEEEEECCCCCCCccCCccC---CCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence            357776555588886431   0000000   000112457999999999876533211       111111222    13


Q ss_pred             CC---eEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCc-------------cceeee
Q 046018          163 RT---FILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKG-------------LFGKLI  225 (310)
Q Consensus       163 ~~---~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~-------------~~~~~i  225 (310)
                      ++   .+|+. +.++.|+.+|..+++.    ++.. ..  -.++..++ +.+|+.......             .-....
T Consensus       298 g~~~~~V~~g-~~~G~l~ald~~tG~~----~W~~~~~--~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~  369 (488)
T cd00216         298 GKPVPAIVHA-PKNGFFYVLDRTTGKL----ISARPEV--EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA  369 (488)
T ss_pred             CCeeEEEEEE-CCCceEEEEECCCCcE----eeEeEee--ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEE
Confidence            33   35554 6778999999875422    1211 10  02233443 556554311000             001113


Q ss_pred             eeccccccEEeeccch---------hhh-------hcccccCCCCceEEEEECC-CCCEEEEEEcCCCCeecceeEEEEe
Q 046018          226 LLNSWLGKTLLKLPLS---------FRQ-------LHSLLVGGKPHATAIKLSE-KGEVLEVLEDCEGKTLSFISEVEEK  288 (310)
Q Consensus       226 ~~~~~~g~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~d~-~g~~~~~~~~~~g~~~~~~~~~~~~  288 (310)
                      ..+..+|+.+...+..         ...       .....+.+.....+.++|. +|+++-.+..+.+.. ..+ .+...
T Consensus       370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~-a~P-~~~~~  447 (488)
T cd00216         370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQ-ATP-MTYEV  447 (488)
T ss_pred             EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCce-EcC-EEEEe
Confidence            4445667766555433         000       0012222233456677875 477776665433221 111 11245


Q ss_pred             CCEEEEecCCC
Q 046018          289 DGQLWMGSVLM  299 (310)
Q Consensus       289 ~g~l~vgs~~~  299 (310)
                      +|++|+++...
T Consensus       448 ~g~~yv~~~~g  458 (488)
T cd00216         448 NGKQYVGVMVG  458 (488)
T ss_pred             CCEEEEEEEec
Confidence            88999998644

The alignment model contains an 8-bladed beta-propeller.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.49  E-value=0.0013  Score=59.92  Aligned_cols=119  Identities=16%  Similarity=0.195  Sum_probs=74.3

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-----------------ceEEEeCCCC-------eEEEEEeecCCcc----------
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-----------------GFQVVGPEGG-------LATQLVTEAAGQP----------   91 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-----------------gi~~~d~~~~-------~~~~~~~~~~~~~----------   91 (310)
                      -.+|.++++.+..|++|++....                 .|+++-+.++       +...+........          
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            35799999999888999987531                 2888877665       4454544321111          


Q ss_pred             ---ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc--ccceEEEecCCCeE
Q 046018           92 ---LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA--FANGVALSRDRTFI  166 (310)
Q Consensus        92 ---~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--~~~gi~~~~d~~~l  166 (310)
                         +..|-+|++|+.|+ ||+.+....-..+..    .  .....+..=++.+++++.+.....  .-.|++++||++.|
T Consensus       496 ~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~----~--~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~Tl  568 (616)
T COG3211         496 ANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNR----F--RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTL  568 (616)
T ss_pred             cccccCCCceEECCCCC-EEEEecCCCCccCcc----c--ccccccccCCCccceeeeeccCCCcceeecceeCCCCceE
Confidence               23488999999999 999986521000000    0  001123334566666666554433  35699999999999


Q ss_pred             EEEec
Q 046018          167 LIAET  171 (310)
Q Consensus       167 yv~~~  171 (310)
                      ||.-+
T Consensus       569 FV~vQ  573 (616)
T COG3211         569 FVNVQ  573 (616)
T ss_pred             EEEec
Confidence            98643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.44  E-value=0.054  Score=46.01  Aligned_cols=164  Identities=12%  Similarity=-0.005  Sum_probs=95.1

Q ss_pred             eccccccccC-CCCCccccccceeceEEEeCCCC--cEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC
Q 046018           27 TTSQRKECVR-PFAPDIEHICGRPLGIRFDKKTG--DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH  103 (310)
Q Consensus        27 ~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~~~g--~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~  103 (310)
                      ..|..||... .+...+....+....+.+.+.--  .|.-+...+.|..++...=..   .....+-. ..+++|++.|.
T Consensus        63 etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~---~~slK~H~-~~Vt~lsiHPS  138 (362)
T KOG0294|consen   63 ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL---LKSLKAHK-GQVTDLSIHPS  138 (362)
T ss_pred             CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE---eeeecccc-cccceeEecCC
Confidence            4455555322 22233344456677777776221  455554444476666543222   12222222 24899999999


Q ss_pred             CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          104 KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       104 g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                      |+ |-++..+                 ++.+..||.-+|+...+..-...+.-+.|+|.|.+.++.  ..++|-+|..+.
T Consensus       139 ~K-LALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~--~~~~i~i~q~d~  198 (362)
T KOG0294|consen  139 GK-LALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS--GRNKIDIYQLDN  198 (362)
T ss_pred             Cc-eEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE--eccEEEEEeccc
Confidence            99 8888754                 666777887766655444334446669999999966665  346788887653


Q ss_pred             CCCCcceeeeeCCCCCCeeEECCCCCEEEEEecC
Q 046018          184 PNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       184 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~  217 (310)
                      .   +.-.....|..+-.+.+...+.|.|+..+.
T Consensus       199 A---~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~  229 (362)
T KOG0294|consen  199 A---SVFREIENPKRILCATFLDGSELLVGGDNE  229 (362)
T ss_pred             H---hHhhhhhccccceeeeecCCceEEEecCCc
Confidence            2   111111233445677777777777775443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.43  E-value=0.056  Score=45.47  Aligned_cols=146  Identities=12%  Similarity=0.099  Sum_probs=89.0

Q ss_pred             eceEEEeCCCCcEEEEECCCc---eEEEeCC--CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAYLG---FQVVGPE--GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~g---i~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ....|+.| +|+...+..-..   ||.+..+  .+.. +......+ -..+.....+-+|++ |.-+ +           
T Consensus       100 VMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~-~v~r~l~g-HtgylScC~f~dD~~-ilT~-S-----------  163 (343)
T KOG0286|consen  100 VMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNV-RVSRELAG-HTGYLSCCRFLDDNH-ILTG-S-----------  163 (343)
T ss_pred             EEEEEECC-CCCeEEecCcCceeEEEecccccccccc-eeeeeecC-ccceeEEEEEcCCCc-eEec-C-----------
Confidence            44678889 777555543332   6666533  1211 12121111 123566777777887 6543 3           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                            .+.+...||.++++......+. ...-.+.++| +++ .||+..-...-..||...+  ...+.|..-..-.+.
T Consensus       164 ------GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINs  234 (343)
T KOG0286|consen  164 ------GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINS  234 (343)
T ss_pred             ------CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeecccccccce
Confidence                  3667889999988776654433 3356788999 776 8888777778888888743  223334332233567


Q ss_pred             eEECCCCCEEEEEecCCc
Q 046018          202 VRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~  219 (310)
                      +.+=|+|.-+++..+...
T Consensus       235 v~ffP~G~afatGSDD~t  252 (343)
T KOG0286|consen  235 VRFFPSGDAFATGSDDAT  252 (343)
T ss_pred             EEEccCCCeeeecCCCce
Confidence            889999987777666553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.40  E-value=0.0063  Score=57.67  Aligned_cols=144  Identities=13%  Similarity=0.100  Sum_probs=91.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....|+++|. -+++.|+....|+..+ |.+.+.+..-..     ....+..+....... +++...             
T Consensus       494 ~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-----l~~~~~~iv~hr~s~-l~a~~~-------------  553 (910)
T KOG1539|consen  494 GEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-----LGSSITGIVYHRVSD-LLAIAL-------------  553 (910)
T ss_pred             CceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-----cCCCcceeeeeehhh-hhhhhc-------------
Confidence            4566999998 8899999888886654 777654321111     112344555554444 333321             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          .+-.|..+|..+.++.+... -....+.++|+|||++|..+ +.++.|..||.-.+..  ...+. .+..+-++.+
T Consensus       554 ----ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa-smD~tIr~wDlpt~~l--ID~~~-vd~~~~sls~  625 (910)
T KOG1539|consen  554 ----DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA-SMDSTIRTWDLPTGTL--IDGLL-VDSPCTSLSF  625 (910)
T ss_pred             ----CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe-ecCCcEEEEeccCcce--eeeEe-cCCcceeeEE
Confidence                13458888887665544332 23457899999999987766 6678999999864321  11111 2234578899


Q ss_pred             CCCCCEEEEEecCC
Q 046018          205 NSNGEFWVALHAKK  218 (310)
Q Consensus       205 d~~G~l~va~~~~~  218 (310)
                      +|.|.+....+.+.
T Consensus       626 SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  626 SPNGDFLATVHVDQ  639 (910)
T ss_pred             CCCCCEEEEEEecC
Confidence            99998888777653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.051  Score=46.24  Aligned_cols=146  Identities=17%  Similarity=0.210  Sum_probs=80.7

Q ss_pred             eEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           51 GIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      +..+.|.+.+..++.. ...-+.++....+-+.+.....+-....+....+++.|++||.++                  
T Consensus       111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt------------------  172 (405)
T KOG1273|consen  111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT------------------  172 (405)
T ss_pred             eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec------------------
Confidence            5555554545555443 222333333333333332222221223455667899999777766                  


Q ss_pred             CCceEEEEeCCCCeEEEE--ecCCcccceEEEecCCCeEEEEecCCceEEEEEccC----CCCCccee---eee-CCCCC
Q 046018          130 KTGRLLKYEKTTKEVTIL--LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG----PNSGKQDV---FAE-LPGFP  199 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~--~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~----~~~~~~~~---~~~-~~~~p  199 (310)
                      ..|.+..|+.++-++..-  .........|.++..|++ ++.++..+.|..|+...    +..+..+.   +.+ ....+
T Consensus       173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~  251 (405)
T KOG1273|consen  173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ  251 (405)
T ss_pred             CcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence            378999999876544321  122345678889988885 44567888999998752    11122221   111 01122


Q ss_pred             -CeeEECCCCCEEEEEe
Q 046018          200 -DNVRSNSNGEFWVALH  215 (310)
Q Consensus       200 -~~i~~d~~G~l~va~~  215 (310)
                       ..++++.+|...+|..
T Consensus       252 Wk~ccfs~dgeYv~a~s  268 (405)
T KOG1273|consen  252 WKKCCFSGDGEYVCAGS  268 (405)
T ss_pred             hhheeecCCccEEEecc
Confidence             4689999997666654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.06  Score=44.81  Aligned_cols=179  Identities=11%  Similarity=0.058  Sum_probs=105.8

Q ss_pred             CcccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccc-cccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCC
Q 046018            2 PYTGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIE-HICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGG   78 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~   78 (310)
                      +++...++.|+.|...+.. |.-           ++    .+. ........+|..| .|++.++..... +..+-..++
T Consensus        30 lAscg~Dk~vriw~~~~~~s~~c-----------k~----vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~   93 (312)
T KOG0645|consen   30 LASCGTDKAVRIWSTSSGDSWTC-----------KT----VLDDGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDG   93 (312)
T ss_pred             EEeecCCceEEEEecCCCCcEEE-----------EE----eccccchheeeeeeecC-CCcEEEEeeccceEEEeecCCC
Confidence            3566677788888776422 541           11    111 1114556799999 888666656555 444444556


Q ss_pred             eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC-CCeEEEEe---cCCccc
Q 046018           79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT-TKEVTILL---QGLAFA  154 (310)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~---~~~~~~  154 (310)
                      .++-+... .+ .-+..-.++.+++|+ +..+-+.                 +..|+.|..+ +++++...   +-....
T Consensus        94 efecv~~l-EG-HEnEVK~Vaws~sG~-~LATCSR-----------------DKSVWiWe~deddEfec~aVL~~HtqDV  153 (312)
T KOG0645|consen   94 EFECVATL-EG-HENEVKCVAWSASGN-YLATCSR-----------------DKSVWIWEIDEDDEFECIAVLQEHTQDV  153 (312)
T ss_pred             ceeEEeee-ec-cccceeEEEEcCCCC-EEEEeeC-----------------CCeEEEEEecCCCcEEEEeeeccccccc
Confidence            66544333 11 234577899999999 5554432                 4445555443 34565532   223345


Q ss_pred             ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC---CCCeeEECCCCCEEEEEecCCc
Q 046018          155 NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG---FPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       155 ~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ..+.+.|-.. |+++.+..+.|..|+...+  ...+....+.+   ....++|++.|.-.+++...+.
T Consensus       154 K~V~WHPt~d-lL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t  218 (312)
T KOG0645|consen  154 KHVIWHPTED-LLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT  218 (312)
T ss_pred             cEEEEcCCcc-eeEEeccCCeEEEEeecCC--CCeeEEEEecCccceEEEEEecCCCceEEEecCCcc
Confidence            7899999766 7888899999988875521  12333333322   3456888998865566655554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.37  E-value=0.0043  Score=55.63  Aligned_cols=170  Identities=7%  Similarity=0.054  Sum_probs=107.0

Q ss_pred             eEEEEEeccccccccCCCCCcccc-ccceec--eEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCc
Q 046018           21 WTEFAVTTSQRKECVRPFAPDIEH-ICGRPL--GIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTN   96 (310)
Q Consensus        21 W~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~--gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~   96 (310)
                      .++++.+++..||...+....-+. ....|.  .|++++ +-+|-++.-..| |.++|.....+.+-.   ++- .....
T Consensus       481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrqf---qGh-tDGas  555 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQF---QGH-TDGAS  555 (705)
T ss_pred             EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecc---cCC-CCCce
Confidence            788888999999987755322222 222343  788888 556666555544 888898866432221   221 12467


Q ss_pred             ceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCce
Q 046018           97 DLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCR  175 (310)
Q Consensus        97 ~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~  175 (310)
                      .|.+++||..||.+.                  .++.|..||..+++- .....+ ...-.+..+|.+.+|.|. +.++.
T Consensus       556 cIdis~dGtklWTGG------------------lDntvRcWDlregrq-lqqhdF~SQIfSLg~cP~~dWlavG-Mens~  615 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGG------------------LDNTVRCWDLREGRQ-LQQHDFSSQIFSLGYCPTGDWLAVG-MENSN  615 (705)
T ss_pred             eEEecCCCceeecCC------------------Cccceeehhhhhhhh-hhhhhhhhhheecccCCCccceeee-cccCc
Confidence            888999999888665                  377899999865432 222222 234566778888877765 77888


Q ss_pred             EEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018          176 ILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      +++....+..   +-.+..-..-.-.+.|..-|..||++...+
T Consensus       616 vevlh~skp~---kyqlhlheScVLSlKFa~cGkwfvStGkDn  655 (705)
T KOG0639|consen  616 VEVLHTSKPE---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN  655 (705)
T ss_pred             EEEEecCCcc---ceeecccccEEEEEEecccCceeeecCchh
Confidence            9888765421   111111111224578889999999987655

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.36  E-value=0.13  Score=48.08  Aligned_cols=83  Identities=16%  Similarity=0.160  Sum_probs=44.9

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCc---cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQ---PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~---~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ++++.. +++||+++..+.|+.+|.++++.. ........   ....-...++. ++. +|++.....+.         .
T Consensus       104 g~~~~~-~~~V~v~~~~g~v~AlD~~TG~~~-W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~---------~  170 (488)
T cd00216         104 GVAYWD-PRKVFFGTFDGRLVALDAETGKQV-WKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFF---------A  170 (488)
T ss_pred             CcEEcc-CCeEEEecCCCeEEEEECCCCCEe-eeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccc---------c
Confidence            344432 379999987767999999988753 21111111   00001122333 354 77765321110         0


Q ss_pred             CCCCceEEEEeCCCCeEEE
Q 046018          128 GDKTGRLLKYEKTTKEVTI  146 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~  146 (310)
                      ....+.|+.+|.++|+..-
T Consensus       171 ~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         171 CGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CCCCcEEEEEECCCCceee
Confidence            1125789999999887654

The alignment model contains an 8-bladed beta-propeller.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.058  Score=50.19  Aligned_cols=148  Identities=9%  Similarity=0.105  Sum_probs=89.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEE-EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQ-LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....||++.+++.|-++-..+-|-.+++..+-... +..   +.+...+.+++..+.++ |+-..              
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~---g~~drsIE~L~W~e~~R-LFS~g--------------   87 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIH---GPEDRSIESLAWAEGGR-LFSSG--------------   87 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEe---cCCCCceeeEEEccCCe-EEeec--------------
Confidence            455689999877777666444447777887764322 222   33445788999998887 87655              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          .+|.|.-||+.+.+.....+. ....-.|+++|.+..+-|. ..++-++-++...+.......+....+..-.+.+
T Consensus        88 ----~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig-cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw  162 (691)
T KOG2048|consen   88 ----LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG-CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW  162 (691)
T ss_pred             ----CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee-cCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence                378899999987766554433 3334678899888766665 4556555544332222222222212233345677


Q ss_pred             CCCCC-EEEEEecC
Q 046018          205 NSNGE-FWVALHAK  217 (310)
Q Consensus       205 d~~G~-l~va~~~~  217 (310)
                      +++|. |..++-++
T Consensus       163 ~~~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  163 NPTGTKIAGGSIDG  176 (691)
T ss_pred             cCCccEEEecccCc
Confidence            77775 55555444

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=97.36  E-value=0.0082  Score=53.82  Aligned_cols=149  Identities=16%  Similarity=0.158  Sum_probs=89.4

Q ss_pred             ceeceEEEeCCCCcEEEEECC-Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....++.... . .-|++... +| |......++........+   .....+.+..++..+++..+.+            
T Consensus       122 stvt~v~YN~-~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~---sgqsvRll~ys~skr~lL~~as------------  184 (673)
T KOG4378|consen  122 STVTYVDYNN-T-DEYIASVSDGGDIIIHGTKTKQKTTTFTID---SGQSVRLLRYSPSKRFLLSIAS------------  184 (673)
T ss_pred             ceeEEEEecC-C-cceeEEeccCCcEEEEecccCccccceecC---CCCeEEEeecccccceeeEeec------------
Confidence            4556777765 3 23555444 33 666666555432222221   1223456667777774555443            


Q ss_pred             hhcCCCCceEEEEeCCCCeEEE-EecCCccc-ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTI-LLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                           ..|.|..||..+..... .......| .||+|+|-...|+++--...+|+.||...+... ..+....|  -..+
T Consensus       185 -----d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y~~P--lstv  256 (673)
T KOG4378|consen  185 -----DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTYSHP--LSTV  256 (673)
T ss_pred             -----cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-ceeeecCC--ccee
Confidence                 38899999987433221 11223334 799999988878888788899999998743221 12222222  1578


Q ss_pred             EECCCCCEEEEEecCCcc
Q 046018          203 RSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~~  220 (310)
                      ++.++|.+.++....+++
T Consensus       257 af~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  257 AFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             eecCCceEEEeecCCceE
Confidence            999999888887777763

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.35  E-value=0.11  Score=47.15  Aligned_cols=144  Identities=14%  Similarity=0.160  Sum_probs=90.5

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ...|+.+-  ++.|......+-|..++++.........   + -...+..+++.+++.+||-++                
T Consensus       282 qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~---G-HnK~ITaLtv~~d~~~i~Sgs----------------  339 (603)
T KOG0318|consen  282 QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVIS---G-HNKSITALTVSPDGKTIYSGS----------------  339 (603)
T ss_pred             eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheec---c-cccceeEEEEcCCCCEEEeec----------------
Confidence            34466654  3455555554448888888776332221   1 122567899999999676555                


Q ss_pred             CCCCceEEEEeCCCCeEEEEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                        .+|.|..|+..++..-.+...  .....+++.+..+. ++.+ .+.+.|.+++..+...+.... ..++..|-++++.
T Consensus       340 --yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~-g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~lav~  414 (603)
T KOG0318|consen  340 --YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTI-GWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLAVL  414 (603)
T ss_pred             --cCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEE-ecCCeEEEEecccCcccccce-eecCCCceeEEEc
Confidence              389999999887766554322  23356787776454 5554 678899999876432222221 2345578899999


Q ss_pred             CCCCEEEEEecCC
Q 046018          206 SNGEFWVALHAKK  218 (310)
Q Consensus       206 ~~G~l~va~~~~~  218 (310)
                      ++|.+.+......
T Consensus       415 ~d~~~avv~~~~~  427 (603)
T KOG0318|consen  415 SDGGTAVVACISD  427 (603)
T ss_pred             CCCCEEEEEecCc
Confidence            9986666555544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.35  E-value=0.11  Score=47.01  Aligned_cols=146  Identities=15%  Similarity=0.115  Sum_probs=86.8

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      ...++.|-+.+|.+.-..+-++.++++++.+..-........-...-.+++.++|. +.-+|                  
T Consensus       204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgD------------------  264 (626)
T KOG2106|consen  204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGD------------------  264 (626)
T ss_pred             EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeec------------------
Confidence            35667775556666644444888999988765433332222225778899999999 77666                  


Q ss_pred             CCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC
Q 046018          130 KTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG  208 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  208 (310)
                      ..|.++.|++.+.+..... .-....-++++..+|. |+ +.-.+++|..||-+=.+..+.+ +.+..|.++-++-. .+
T Consensus       265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~e-lPe~~G~iRtv~e~-~~  340 (626)
T KOG2106|consen  265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETE-LPEQFGPIRTVAEG-KG  340 (626)
T ss_pred             CCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEecccccccccccc-CchhcCCeeEEecC-CC
Confidence            3788999999766554422 2233456788888886 44 3566788988873311111111 11111334444443 23


Q ss_pred             CEEEEEecCC
Q 046018          209 EFWVALHAKK  218 (310)
Q Consensus       209 ~l~va~~~~~  218 (310)
                      .|+|++.++.
T Consensus       341 di~vGTtrN~  350 (626)
T KOG2106|consen  341 DILVGTTRNF  350 (626)
T ss_pred             cEEEeeccce
Confidence            4777776654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.35  E-value=0.038  Score=45.14  Aligned_cols=146  Identities=11%  Similarity=0.094  Sum_probs=86.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      +....+.++. +|+--++-.... |..+||..+.+.+...   + -.+...+++...|.. -+.+-.             
T Consensus        18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs---g-hG~EVlD~~~s~Dns-kf~s~G-------------   78 (307)
T KOG0316|consen   18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS---G-HGHEVLDAALSSDNS-KFASCG-------------   78 (307)
T ss_pred             cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec---C-CCceeeecccccccc-ccccCC-------------
Confidence            5555677776 666333333334 5566887776543322   2 223456666666655 333321             


Q ss_pred             hcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          .+..++.||.++|+... +.......|.+.|..+.. ++++.+....+..||.......+.+.+.+.......  +
T Consensus        79 ----gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S--i  151 (307)
T KOG0316|consen   79 ----GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS--I  151 (307)
T ss_pred             ----CCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeE--E
Confidence                25579999999998765 334456689999987765 888888999999999876544444444442222223  3


Q ss_pred             CCCCCEEEEEecCC
Q 046018          205 NSNGEFWVALHAKK  218 (310)
Q Consensus       205 d~~G~l~va~~~~~  218 (310)
                      |-.+...++....+
T Consensus       152 ~v~~heIvaGS~DG  165 (307)
T KOG0316|consen  152 DVAEHEIVAGSVDG  165 (307)
T ss_pred             EecccEEEeeccCC
Confidence            33444445544433

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.34  E-value=0.00097  Score=39.24  Aligned_cols=37  Identities=22%  Similarity=0.145  Sum_probs=32.7

Q ss_pred             ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          148 LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       148 ~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ......|+|+++++.+++||+++...+.|.+.+.+|.
T Consensus         5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            4467789999999999999999999999999998763

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.34  E-value=0.013  Score=53.30  Aligned_cols=150  Identities=17%  Similarity=0.141  Sum_probs=87.9

Q ss_pred             EEeCCCCC--eEEEEEec---cccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc---eEEEeCCCCeEEEEE
Q 046018           13 KWQGDELG--WTEFAVTT---SQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG---FQVVGPEGGLATQLV   84 (310)
Q Consensus        13 ~~~~~~~~--W~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g---i~~~d~~~~~~~~~~   84 (310)
                      .|.++...  ...++..+   +..++..+..-..+....+.-...+++++..+|.++....|   |+.+|..++.++++.
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt  278 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT  278 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecc
Confidence            44554443  34444444   33335444333344444444456778883445555555543   999999988765532


Q ss_pred             eecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCC
Q 046018           85 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRT  164 (310)
Q Consensus        85 ~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~  164 (310)
                      .. .+  ...  .=.++|||+.|+++.+..               ..-.|++++++++..+.+.........-.++|||+
T Consensus       279 ~~-~g--i~~--~Ps~spdG~~ivf~Sdr~---------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         279 NG-FG--INT--SPSWSPDGSKIVFTSDRG---------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             cC-Cc--ccc--CccCCCCCCEEEEEeCCC---------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCC
Confidence            21 11  111  345779999888887541               12369999999887777665555555677999999


Q ss_pred             eEEEEecCCce--EEEEEcc
Q 046018          165 FILIAETSNCR--ILRFWLH  182 (310)
Q Consensus       165 ~lyv~~~~~~~--i~~~~~~  182 (310)
                      ++.+.....+.  |..+++.
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             EEEEEeccCCceeeEEeccC
Confidence            77666533333  4444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.072  Score=51.33  Aligned_cols=113  Identities=8%  Similarity=0.027  Sum_probs=72.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....+++...  +.+.++...+-|.++....+....+......    -.++++++.+|+++.++. .             
T Consensus        57 ~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl----p~r~~~v~g~g~~iaags-d-------------  116 (933)
T KOG1274|consen   57 ELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEEDTILARFTL----PIRDLAVSGSGKMIAAGS-D-------------  116 (933)
T ss_pred             ceeEEEeecc--cceEEeeccceEEEeeCCCCCccceeeeeec----cceEEEEecCCcEEEeec-C-------------
Confidence            4455677654  5666666666677776655554333332111    367899999999333333 2             


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                          +-.|-.++..+...+....+...| -++.++|.+++|-++ +.++.|++|+++.+
T Consensus       117 ----D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs-s~dG~v~iw~~~~~  170 (933)
T KOG1274|consen  117 ----DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS-SCDGKVQIWDLQDG  170 (933)
T ss_pred             ----ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE-ecCceEEEEEcccc
Confidence                334666777666665555555555 589999999955554 77899999998754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.33  E-value=0.024  Score=51.19  Aligned_cols=172  Identities=13%  Similarity=0.157  Sum_probs=94.6

Q ss_pred             EEeCCCCcEEEEECCCc-eEEEeCCC--CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           53 RFDKKTGDLYIADAYLG-FQVVGPEG--GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        53 ~~d~~~g~l~v~~~~~g-i~~~d~~~--~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      .+.|...+.+++....| +..++.+.  .++..+-....+..-..+...+++++|. ++.+.-                 
T Consensus       275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc-----------------  336 (641)
T KOG0772|consen  275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGC-----------------  336 (641)
T ss_pred             ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcc-----------------
Confidence            46675666777777765 33334332  3333333333333334567788999999 644432                 


Q ss_pred             CCceEEEEeCCCCeEEE------EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC-CCC-Ce
Q 046018          130 KTGRLLKYEKTTKEVTI------LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP-GFP-DN  201 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~------~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p-~~  201 (310)
                      .+|.|..|+.-+-...+      ..........|+|++||+. +.+-...+.+-+||++-.+. ....+..++ .+| .+
T Consensus       337 ~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~td  414 (641)
T KOG0772|consen  337 LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTD  414 (641)
T ss_pred             cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeecccccc-chhhhcCCCccCCCCc
Confidence            37888888853221111      1122335678999999994 45667788999999873211 112222232 223 56


Q ss_pred             eEECCCCCEEEEEecC--CccceeeeeeccccccEEeeccchhhh
Q 046018          202 VRSNSNGEFWVALHAK--KGLFGKLILLNSWLGKTLLKLPLSFRQ  244 (310)
Q Consensus       202 i~~d~~G~l~va~~~~--~~~~~~~i~~~~~~g~~~~~~~~~~~~  244 (310)
                      .+|+|+-.|.++....  +..-.....++..+-+.+..+..+...
T Consensus       415 c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aS  459 (641)
T KOG0772|consen  415 CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTAS  459 (641)
T ss_pred             cccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCce
Confidence            8999999887764332  211111122233344555666655433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.29  E-value=0.019  Score=54.06  Aligned_cols=162  Identities=15%  Similarity=0.173  Sum_probs=97.6

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      +-..|..+.| +.+..+....++ +..+..++........   + ...-..++.+.|.|.  ||++.+            
T Consensus       452 GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~---G-H~~PVwdV~F~P~Gy--YFatas------------  512 (707)
T KOG0263|consen  452 GPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK---G-HLAPVWDVQFAPRGY--YFATAS------------  512 (707)
T ss_pred             Cceeeeeecc-cccceeeccCCcceeeeecccceeEEEec---C-CCcceeeEEecCCce--EEEecC------------
Confidence            4455899999 777777777654 5555666554332222   1 111247888999985  555543            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                        .+.+.++|..|-. ...+++...+..-..+.|.|... ...+.+..+.|..||...+.  .+++|..-.+....++++
T Consensus       513 --~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~S  586 (707)
T KOG0263|consen  513 --HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFS  586 (707)
T ss_pred             --CCceeeeeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEc
Confidence              2245667766642 33444445556677899999876 34455677899999987442  245554433344789999


Q ss_pred             CCCCEEEEEecCCccceeeeee-ccccccEEeec
Q 046018          206 SNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKL  238 (310)
Q Consensus       206 ~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~  238 (310)
                      ++|+..++....+.     |.. +-+.|..+..+
T Consensus       587 p~Gr~LaSg~ed~~-----I~iWDl~~~~~v~~l  615 (707)
T KOG0263|consen  587 PCGRYLASGDEDGL-----IKIWDLANGSLVKQL  615 (707)
T ss_pred             CCCceEeecccCCc-----EEEEEcCCCcchhhh
Confidence            99966555544443     333 34555554443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.28  E-value=0.011  Score=52.78  Aligned_cols=146  Identities=10%  Similarity=0.129  Sum_probs=92.5

Q ss_pred             eceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ...+.++. .|.=+.+...++ |-.+|.++|+...-...     ..-|..+.+.|++..++++...              
T Consensus       261 Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~s--------------  320 (503)
T KOG0282|consen  261 VRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNIFLVGGS--------------  320 (503)
T ss_pred             hhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcEEEEecC--------------
Confidence            34677877 776666656555 66679999986543332     2357888999988337777643              


Q ss_pred             CCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018          128 GDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS  206 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  206 (310)
                         +++|..||..++++.. ....+...+.|.|-++++ -+++.+....+.+|+.+....-........ -.=-.+...|
T Consensus       321 ---d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~-hsmP~~~~~P  395 (503)
T KOG0282|consen  321 ---DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEM-HTMPCLTLHP  395 (503)
T ss_pred             ---CCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhh-ccCcceecCC
Confidence               7889999987776432 224466788999999988 567778888999888764321111111111 0112456667


Q ss_pred             CCCEEEEEecCCc
Q 046018          207 NGEFWVALHAKKG  219 (310)
Q Consensus       207 ~G~l~va~~~~~~  219 (310)
                      .|..+++..-.+.
T Consensus       396 ~~~~~~aQs~dN~  408 (503)
T KOG0282|consen  396 NGKWFAAQSMDNY  408 (503)
T ss_pred             CCCeehhhccCce
Confidence            7766666554443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.27  E-value=0.0075  Score=53.81  Aligned_cols=123  Identities=13%  Similarity=0.137  Sum_probs=82.2

Q ss_pred             cccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEE
Q 046018           29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVI  107 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l  107 (310)
                      +..++..+.....++...+....+.+++ +|+ +.+++....|+.+|.+++..+.+-..    ....+.+++.+|+++++
T Consensus       384 l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS----~~~lItdf~~~~nsr~i  458 (668)
T COG4946         384 LGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKS----EYGLITDFDWHPNSRWI  458 (668)
T ss_pred             EEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEeccc----ccceeEEEEEcCCceeE
Confidence            4455666644344555667888999999 766 67776666799999999987644222    22357789999999833


Q ss_pred             EEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEe
Q 046018          108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~  170 (310)
                      -.+-.              .+.....+..||.++++.-.+.+....--.-+|+||++.||+-+
T Consensus       459 AYafP--------------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         459 AYAFP--------------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEecC--------------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            22221              12234457788988877765555444445667999999999864

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.27  E-value=0.019  Score=51.28  Aligned_cols=162  Identities=17%  Similarity=0.222  Sum_probs=88.3

Q ss_pred             eEEEeCCCCcEEEEECCC-------------c-eEEEeCCCCeEEEEEeec-C-----CccccCCcceEEeCC-CCEEEE
Q 046018           51 GIRFDKKTGDLYIADAYL-------------G-FQVVGPEGGLATQLVTEA-A-----GQPLRFTNDLDIDEH-KGVIYF  109 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~-------------g-i~~~d~~~~~~~~~~~~~-~-----~~~~~~~~~i~~d~~-g~~l~v  109 (310)
                      .|++++ +|+|||+....             | |.+++..+...   .+.+ .     ......|.+++++|. |. ||+
T Consensus       181 ~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~---~d~p~~~~~i~s~G~RN~qGl~w~P~tg~-Lw~  255 (399)
T COG2133         181 RLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIP---ADNPFPNSEIWSYGHRNPQGLAWHPVTGA-LWT  255 (399)
T ss_pred             cEEECC-CCcEEEEeCCCCCcccccCccccccceeeeccCcccc---cCCCCCCcceEEeccCCccceeecCCCCc-EEE
Confidence            599999 88999987543             1 44443332110   0110 0     113446889999998 77 999


Q ss_pred             EeCCCchhhh-hhhhhhhcCCCCceEEEE-e--CCC-----CeEE-E------EecCCcccceEEEecC-------CCeE
Q 046018          110 TDSSTSFQRR-QFMSSILSGDKTGRLLKY-E--KTT-----KEVT-I------LLQGLAFANGVALSRD-------RTFI  166 (310)
Q Consensus       110 ~~~~~~~~~~-~~~~~~~~~~~~g~v~~~-d--~~~-----~~~~-~------~~~~~~~~~gi~~~~d-------~~~l  166 (310)
                      ++...++.+. ..+..+-.+..-|.-+.+ -  .++     +... .      .......|.||+|...       ++ |
T Consensus       256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~-l  334 (399)
T COG2133         256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD-L  334 (399)
T ss_pred             EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc-E
Confidence            9866522211 011111111112222222 0  000     0010 0      0122345789999953       34 8


Q ss_pred             EEEecCCceEEEEEccCCCCCccee-ee-eCCCCCCeeEECCCCCEEEEEecCC
Q 046018          167 LIAETSNCRILRFWLHGPNSGKQDV-FA-ELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       167 yv~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      +|+...+..+.+.++++...-..+. +. +..+.|.++++.+||.|++++..+.
T Consensus       335 fV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~  388 (399)
T COG2133         335 FVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGD  388 (399)
T ss_pred             EEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCC
Confidence            9998877777777776541111111 21 2347899999999999999988754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.27  E-value=0.028  Score=49.43  Aligned_cols=151  Identities=13%  Similarity=-0.014  Sum_probs=83.2

Q ss_pred             ccccceeceEEEeCCC-CcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           43 EHICGRPLGIRFDKKT-GDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~-g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      .....+..++.+.|.. +.-.++...+| +-.++.++..  .+.+. .+ -...+..+++.|+|+ +..+.+.       
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~l~~l-~g-H~~RVs~VafHPsG~-~L~Tasf-------  281 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--PLQDL-EG-HLARVSRVAFHPSGK-FLGTASF-------  281 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCc--chhhh-hc-chhhheeeeecCCCc-eeeeccc-------
Confidence            3344567788899852 32233333345 4444444432  23222 11 124678899999999 6666543       


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCC
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGF  198 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~  198 (310)
                                +.....||..++..-...++.. ...+|++.+||. |..+.....-=.+||+..+   ....+.. --..
T Consensus       282 ----------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtg---r~im~L~gH~k~  347 (459)
T KOG0272|consen  282 ----------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTG---RCIMFLAGHIKE  347 (459)
T ss_pred             ----------ccchhhcccccchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccC---cEEEEecccccc
Confidence                      3445567776654333333333 357899999998 6665443333344566532   2233322 1133


Q ss_pred             CCeeEECCCCCEEEEEecCCc
Q 046018          199 PDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ..++.++|+|....+....+.
T Consensus       348 I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  348 ILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             eeeEeECCCceEEeecCCCCc
Confidence            468999999976555544443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.26  E-value=0.04  Score=45.19  Aligned_cols=159  Identities=10%  Similarity=0.093  Sum_probs=96.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEE-eCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI-DEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~-d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      +..+.|.+||++|.|+.+.....++.+|.+++++++.....    ..+...++- ...++ ++-+.              
T Consensus       115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH----tDYvH~vv~R~~~~q-ilsG~--------------  175 (325)
T KOG0649|consen  115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH----TDYVHSVVGRNANGQ-ILSGA--------------  175 (325)
T ss_pred             CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC----cceeeeeeecccCcc-eeecC--------------
Confidence            45678999998999999874445999999999987665431    235666665 45666 55443              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccce---------EEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANG---------VALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP  196 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~g---------i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~  196 (310)
                          .+|.+..||.++++..........|+.         .+++-+..+|. + -....+..|.+...   +.......|
T Consensus       176 ----EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlv-C-GgGp~lslwhLrss---e~t~vfpip  246 (325)
T KOG0649|consen  176 ----EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV-C-GGGPKLSLWHLRSS---ESTCVFPIP  246 (325)
T ss_pred             ----CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEE-e-cCCCceeEEeccCC---CceEEEecc
Confidence                588999999988877666544444331         34444555333 3 23456666666532   223333344


Q ss_pred             CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          197 GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       197 ~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      ....-+.++.|- +.++. .+++     +..+...|.+...+|+
T Consensus       247 a~v~~v~F~~d~-vl~~G-~g~~-----v~~~~l~Gvl~a~ip~  283 (325)
T KOG0649|consen  247 ARVHLVDFVDDC-VLIGG-EGNH-----VQSYTLNGVLQANIPV  283 (325)
T ss_pred             cceeEeeeecce-EEEec-cccc-----eeeeeeccEEEEeccC
Confidence            444556666543 33333 3333     5666666666666554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=97.25  E-value=0.082  Score=45.77  Aligned_cols=113  Identities=9%  Similarity=0.105  Sum_probs=75.6

Q ss_pred             ceeceEEEeCCCCcEEEEECC-Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      +=...++++| .++ |+++.. ++ |-.+|..++++......    -....+++++++..-++|.+.             
T Consensus       152 gWVr~vavdP-~n~-wf~tgs~DrtikIwDlatg~LkltltG----hi~~vr~vavS~rHpYlFs~g-------------  212 (460)
T KOG0285|consen  152 GWVRSVAVDP-GNE-WFATGSADRTIKIWDLATGQLKLTLTG----HIETVRGVAVSKRHPYLFSAG-------------  212 (460)
T ss_pred             ceEEEEeeCC-Cce-eEEecCCCceeEEEEcccCeEEEeecc----hhheeeeeeecccCceEEEec-------------
Confidence            3345789998 544 555544 55 66679999987543321    234678999999888555544             


Q ss_pred             hhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                           .++.|-.||++..++.. ...-+....++.+.|--+ ++++...+..+.+||+.+.
T Consensus       213 -----edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr  267 (460)
T KOG0285|consen  213 -----EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTR  267 (460)
T ss_pred             -----CCCeeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeeccc
Confidence                 26678999997655443 223355567888888666 6666667778899998753

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.22  E-value=0.035  Score=53.36  Aligned_cols=145  Identities=10%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             ceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           50 LGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      .-++++. +|+..++... ..|-.++..+...........+    ..-+|.++|+++ +.+..+                
T Consensus       100 r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~-fLAvss----------------  157 (933)
T KOG1274|consen  100 RDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGN-FLAVSS----------------  157 (933)
T ss_pred             eEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCC----ceeeeeEcCCCC-EEEEEe----------------
Confidence            3677887 7776555444 3566666655443333222111    245788999999 655553                


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCc----c-----cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC-CCC
Q 046018          129 DKTGRLLKYEKTTKEVTILLQGLA----F-----ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-PGF  198 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~~~----~-----~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~  198 (310)
                       .+|.|+.|+.+++.......+..    .     -.-++|.|++..+.+. ...+.|.+|+.++-.. ......+. ...
T Consensus       158 -~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we~-~f~Lr~~~~ss~  234 (933)
T KOG1274|consen  158 -CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWEL-QFKLRDKLSSSK  234 (933)
T ss_pred             -cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCcee-heeecccccccc
Confidence             38999999998876554332221    1     2457999997766665 4568999998875211 01111111 111


Q ss_pred             CCeeEECCCCCEEEEEecCCc
Q 046018          199 PDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~~  219 (310)
                      -.-+.++|.|....|..-.++
T Consensus       235 ~~~~~wsPnG~YiAAs~~~g~  255 (933)
T KOG1274|consen  235 FSDLQWSPNGKYIAASTLDGQ  255 (933)
T ss_pred             eEEEEEcCCCcEEeeeccCCc
Confidence            245778898865555444444

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.20  E-value=0.066  Score=47.92  Aligned_cols=175  Identities=12%  Similarity=0.142  Sum_probs=99.8

Q ss_pred             eeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ...++.+-. +|+|+.+....| |..||.++..   +.....+ ...-.+-+.+.|+++.++++.+.             
T Consensus        70 ~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~---iLR~~~a-h~apv~~~~f~~~d~t~l~s~sD-------------  131 (487)
T KOG0310|consen   70 VVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRV---ILRQLYA-HQAPVHVTKFSPQDNTMLVSGSD-------------  131 (487)
T ss_pred             ceeEEEeec-CCeEEEccCCcCcEEEeccccHH---HHHHHhh-ccCceeEEEecccCCeEEEecCC-------------
Confidence            344666766 889988877766 6777855421   1111111 11124556677777746655432             


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCC-CeeE
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFP-DNVR  203 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p-~~i~  203 (310)
                          +..+..||.+++..+.-..+. ......+++|-..+++++.+..+.|..||.....    ....+ .-+.| ..+.
T Consensus       132 ----d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~elnhg~pVe~vl  203 (487)
T KOG0310|consen  132 ----DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT----SRVVELNHGCPVESVL  203 (487)
T ss_pred             ----CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC----ceeEEecCCCceeeEE
Confidence                445666777765543222221 2246778888888899999999999999977431    12222 22334 6777


Q ss_pred             ECCCCCEEEEEecCCccceeeeeecc--ccccEEeeccchhhhhcccccCCCC
Q 046018          204 SNSNGEFWVALHAKKGLFGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKP  254 (310)
Q Consensus       204 ~d~~G~l~va~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      +=+.|.+.++..++.      +..++  ..++.+..........+|+.+...+
T Consensus       204 ~lpsgs~iasAgGn~------vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~  250 (487)
T KOG0310|consen  204 ALPSGSLIASAGGNS------VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS  250 (487)
T ss_pred             EcCCCCEEEEcCCCe------EEEEEecCCceehhhhhcccceEEEEEeecCC
Confidence            778888877665554      33333  2344443333233445566555544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.19  E-value=0.091  Score=46.55  Aligned_cols=100  Identities=12%  Similarity=0.110  Sum_probs=63.4

Q ss_pred             CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEec
Q 046018           95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAET  171 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~  171 (310)
                      .+++...|.|.++..++                  .++.....|..++..-.....   ...-...++.|||- ++.+.+
T Consensus       306 V~~ls~h~tgeYllsAs------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt  366 (506)
T KOG0289|consen  306 VTGLSLHPTGEYLLSAS------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGT  366 (506)
T ss_pred             ceeeeeccCCcEEEEec------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccC
Confidence            57788899999555444                  256666667666654433222   12246788999996 888888


Q ss_pred             CCceEEEEEccCCCCCcceeeeeCC---CCCCeeEECCCCCEEEEEecCC
Q 046018          172 SNCRILRFWLHGPNSGKQDVFAELP---GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      .++.|-+||...+.     ..+.+|   +....|.|..+|...+...+..
T Consensus       367 ~d~~vkiwdlks~~-----~~a~Fpght~~vk~i~FsENGY~Lat~add~  411 (506)
T KOG0289|consen  367 PDGVVKIWDLKSQT-----NVAKFPGHTGPVKAISFSENGYWLATAADDG  411 (506)
T ss_pred             CCceEEEEEcCCcc-----ccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence            88999999987431     223333   2336789998884433333444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.13  E-value=0.065  Score=50.89  Aligned_cols=176  Identities=10%  Similarity=0.057  Sum_probs=108.9

Q ss_pred             CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeE
Q 046018            2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLA   80 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~   80 (310)
                      |+++.+|..|+.|.++.+.             |     -.........+-+++.|.+.+-|+...-++ +..++....++
T Consensus       383 LLSSSMDKTVRLWh~~~~~-------------C-----L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V  444 (712)
T KOG0283|consen  383 LLSSSMDKTVRLWHPGRKE-------------C-----LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV  444 (712)
T ss_pred             eEeccccccEEeecCCCcc-------------e-----eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCee
Confidence            6788899999999987752             0     001111234557889997888777766654 77777776665


Q ss_pred             EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe----c-C----C
Q 046018           81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL----Q-G----L  151 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~-~----~  151 (310)
                      ....+. .    ..+..+++.|||+...|++                  -+|....|+..+-+++.-.    . .    .
T Consensus       445 v~W~Dl-~----~lITAvcy~PdGk~avIGt------------------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  445 VDWNDL-R----DLITAVCYSPDGKGAVIGT------------------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             Eeehhh-h----hhheeEEeccCCceEEEEE------------------eccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            433222 1    2578899999999777776                  2777888887765554311    1 1    1


Q ss_pred             cccceEEEecC-CCeEEEEecCCceEEEEEccCCCCC-cceeeeeCCCCCCeeEECCCCCEEEEEecCCcc
Q 046018          152 AFANGVALSRD-RTFILIAETSNCRILRFWLHGPNSG-KQDVFAELPGFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       152 ~~~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                      ...-|+.+.|. -..|+|+ +...+|.+||.....+- +..-+.+. .......+..||.-.|.......+
T Consensus       502 ~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~~n~-~SQ~~Asfs~Dgk~IVs~seDs~V  570 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGFRNT-SSQISASFSSDGKHIVSASEDSWV  570 (712)
T ss_pred             ceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhhhhhcccccC-CcceeeeEccCCCEEEEeecCceE
Confidence            23568888763 3347877 67789999997432111 11111111 123445677788877777766653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.12  E-value=0.013  Score=51.31  Aligned_cols=113  Identities=11%  Similarity=0.093  Sum_probs=76.0

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+...++-| +|.=+|+... ..++.+|.++......    .+.......++++.+||++++....             
T Consensus       313 ~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W----~gvr~~~v~dlait~Dgk~vl~v~~-------------  374 (519)
T KOG0293|consen  313 FSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNW----EGVRDPKVHDLAITYDGKYVLLVTV-------------  374 (519)
T ss_pred             CCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcc----cccccceeEEEEEcCCCcEEEEEec-------------
Confidence            4566788888 7766666666 4599999987653222    2333346889999999997776652             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                           +..+..|+.++..-..+.........+.++.|++ +..++-..+.|..||...
T Consensus       375 -----d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  375 -----DKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             -----ccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch
Confidence                 4557777766432222333444557789999998 444556778999999873

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.12  E-value=0.052  Score=45.68  Aligned_cols=142  Identities=17%  Similarity=0.201  Sum_probs=78.2

Q ss_pred             EEEEeCCCCeEEEEecCCc----ccceEEEecCCCeEEEEecC----CceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          134 LLKYEKTTKEVTILLQGLA----FANGVALSRDRTFILIAETS----NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       134 v~~~d~~~~~~~~~~~~~~----~~~gi~~~~d~~~lyv~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                      .+.+|+.+++.-.......    ..+| ++++||+.||.++..    .+-|-+||.+.+ ......+....-.|..+.+-
T Consensus        93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG-vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm  170 (366)
T COG3490          93 AMVFDPNGAQEPVTLVSQEGRHFYGHG-VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLM  170 (366)
T ss_pred             EEEECCCCCcCcEEEecccCceeeccc-ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEe
Confidence            5677877654332221111    1334 489999999998753    467888887632 11122222222358899999


Q ss_pred             CCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEEC-CCCCEEEEEEcCCCCeecce-e
Q 046018          206 SNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLS-EKGEVLEVLEDCEGKTLSFI-S  283 (310)
Q Consensus       206 ~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~g~~~~~~~~~~g~~~~~~-~  283 (310)
                      +||++.+..+.+       |...+..|.....+..   +          ...++-+| .+|++++.-..+.......+ +
T Consensus       171 ~DGrtlvvanGG-------IethpdfgR~~lNlds---M----------ePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         171 ADGRTLVVANGG-------IETHPDFGRTELNLDS---M----------EPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             cCCcEEEEeCCc-------eecccccCccccchhh---c----------CccEEEEeccccchhhhccCchhhhhcceee
Confidence            999988877654       2333322322211110   0          12456667 67888776555433211112 2


Q ss_pred             EEEEeCCEEEEecC
Q 046018          284 EVEEKDGQLWMGSV  297 (310)
Q Consensus       284 ~~~~~~g~l~vgs~  297 (310)
                      .....+|++|+|+-
T Consensus       231 ld~g~dgtvwfgcQ  244 (366)
T COG3490         231 LDIGRDGTVWFGCQ  244 (366)
T ss_pred             eeeCCCCcEEEEEE
Confidence            33345789999885

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=97.12  E-value=0.14  Score=43.70  Aligned_cols=132  Identities=7%  Similarity=0.002  Sum_probs=72.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEE--EEEeecCCccccCCcceEEeCCCCEEEEEeCCC---------
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLAT--QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST---------  114 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~--~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~---------  114 (310)
                      ....+|+++. +|+-+++-..++ |..++.++-..+  +...  ...+...|..+++.||.+.+.|.-...         
T Consensus        87 ~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R--~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   87 KEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIR--QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             CceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhh--ccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            4577999998 887666666655 555565542111  0111  123344688888888877554443211         


Q ss_pred             ------------chhh--h--hhh------------hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE
Q 046018          115 ------------SFQR--R--QFM------------SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI  166 (310)
Q Consensus       115 ------------~~~~--~--~~~------------~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l  166 (310)
                                  .|..  .  ...            -.+.....+..|+.|+..+.-+..+......-..-+++|+|+++
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFi  243 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFI  243 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEE
Confidence                        0100  0  000            00111223345777777744344444444445677899999976


Q ss_pred             EEEecCCceEEEEEcc
Q 046018          167 LIAETSNCRILRFWLH  182 (310)
Q Consensus       167 yv~~~~~~~i~~~~~~  182 (310)
                      .++ ..+.-|.+|.+-
T Consensus       244 a~~-gFTpDVkVwE~~  258 (420)
T KOG2096|consen  244 AVS-GFTPDVKVWEPI  258 (420)
T ss_pred             EEe-cCCCCceEEEEE
Confidence            665 566778888764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.10  E-value=0.16  Score=44.05  Aligned_cols=161  Identities=12%  Similarity=0.070  Sum_probs=97.0

Q ss_pred             eeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ..-.++++| +.+|.++.... .-+.++..++..  +... .+ -...+..+.++.+|. +.+|..              
T Consensus        66 svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~--~~el-tg-HKDSVt~~~Fshdgt-lLATGd--------------  125 (399)
T KOG0296|consen   66 SVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEF--AGEL-TG-HKDSVTCCSFSHDGT-LLATGD--------------  125 (399)
T ss_pred             ceEEEEeCC-CCceEEecCCCceEEEEEccCCcc--eeEe-cC-CCCceEEEEEccCce-EEEecC--------------
Confidence            344688888 66655554443 356667777763  2222 11 112567788999998 665542              


Q ss_pred             cCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEE
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRS  204 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~  204 (310)
                         -+|.|..|..+++..+.... ......=+.+.|-.. ++.+.+..+.||.|.+..+  +..+.+.. ...| ..-.+
T Consensus       126 ---msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~G-h~~~ct~G~f  198 (399)
T KOG0296|consen  126 ---MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSG-HNSPCTCGEF  198 (399)
T ss_pred             ---CCccEEEEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecC-CCCCcccccc
Confidence               37889999988876665332 233334466777665 5666688899999987643  22223322 1112 23356


Q ss_pred             CCCCCEEEEEecCCccceeeeeeccccccEEeecc
Q 046018          205 NSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLP  239 (310)
Q Consensus       205 d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~  239 (310)
                      -|+|...+..+..+.+    +...+++++.+..+.
T Consensus       199 ~pdGKr~~tgy~dgti----~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  199 IPDGKRILTGYDDGTI----IVWNPKTGQPLHKIT  229 (399)
T ss_pred             cCCCceEEEEecCceE----EEEecCCCceeEEec
Confidence            6788666666666653    455667888877775

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.08  E-value=0.17  Score=44.09  Aligned_cols=225  Identities=15%  Similarity=0.209  Sum_probs=106.0

Q ss_pred             eEEEeCCCCcEEEEECC-----Cc-----eEEEeCCCCeEEEEEeecCC---ccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018           51 GIRFDKKTGDLYIADAY-----LG-----FQVVGPEGGLATQLVTEAAG---QPLRFTNDLDIDEHKGVIYFTDSSTSFQ  117 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~-----~g-----i~~~d~~~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~~l~v~~~~~~~~  117 (310)
                      .++++++...+|+++..     +|     |..+|..+-..+.-+..+..   ....+++.++++.||+++||.+....-.
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            47788866678988753     22     67789988765443333322   1235788999999999999987432100


Q ss_pred             -------hhhhhh----------------hhhcCCCCceEEEEeCC-CCeEEEEecCCcc----c--ceEEEecCCCeEE
Q 046018          118 -------RRQFMS----------------SILSGDKTGRLLKYEKT-TKEVTILLQGLAF----A--NGVALSRDRTFIL  167 (310)
Q Consensus       118 -------~~~~~~----------------~~~~~~~~g~v~~~d~~-~~~~~~~~~~~~~----~--~gi~~~~d~~~ly  167 (310)
                             ..+...                .+..-=.+|.+..+..+ .|+........-.    |  +.-++..++.++|
T Consensus       120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~  199 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLY  199 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEE
T ss_pred             EEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEE
Confidence                   000000                00000134444443332 2222211111111    1  2223444455566


Q ss_pred             EEecCCceEEEEEccCCCCCcceeeeeC------CC-CCCe---eEEC-CCCCEEEEEecCCc----cceeeee-ecccc
Q 046018          168 IAETSNCRILRFWLHGPNSGKQDVFAEL------PG-FPDN---VRSN-SNGEFWVALHAKKG----LFGKLIL-LNSWL  231 (310)
Q Consensus       168 v~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~-~p~~---i~~d-~~G~l~va~~~~~~----~~~~~i~-~~~~~  231 (310)
                      +. +.++.|+..+..+........+.-.      .+ .|.|   ++++ +.|+|||.-+.+..    --.+-|. .+..+
T Consensus       200 F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t  278 (342)
T PF06433_consen  200 FV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT  278 (342)
T ss_dssp             EE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred             EE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC
Confidence            65 6788888888876432111111101      11 1322   6665 46688887654321    1111133 34466


Q ss_pred             ccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCC
Q 046018          232 GKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGK  277 (310)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~  277 (310)
                      ++.+.+++++.+ +.++.+...+..+++.++.....+.++....|+
T Consensus       279 ~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  279 HKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             TEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             CeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            777777766432 234555555566666665544455555444444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.08  E-value=0.055  Score=47.67  Aligned_cols=131  Identities=20%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             eeceEEEeCCCCcEEEEECCC-------ceEEEeCCCCeEEEEEe-e-c-------CCc-cccCCcceEEeCCCCEEEEE
Q 046018           48 RPLGIRFDKKTGDLYIADAYL-------GFQVVGPEGGLATQLVT-E-A-------AGQ-PLRFTNDLDIDEHKGVIYFT  110 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~-------gi~~~d~~~~~~~~~~~-~-~-------~~~-~~~~~~~i~~d~~g~~l~v~  110 (310)
                      -+.||++.+ +|.+||++...       .|++++.++.....+.. . .       ... ......+|+++++|++||++
T Consensus        86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            566999966 99999999875       39999988544333311 1 1       111 22356799999999989988


Q ss_pred             eCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe--EEEE---ec------CCcccceEEEecCCCeEEEEecC-------
Q 046018          111 DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE--VTIL---LQ------GLAFANGVALSRDRTFILIAETS-------  172 (310)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~~---~~------~~~~~~gi~~~~d~~~lyv~~~~-------  172 (310)
                      .....++.....  .......-+++.||+.+..  ...+   ..      ....+..++.-+|++ ++|.+..       
T Consensus       165 ~E~~l~~d~~~~--~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~  241 (326)
T PF13449_consen  165 MESPLKQDGPRA--NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGN  241 (326)
T ss_pred             ECccccCCCccc--ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccc
Confidence            765432211000  0000112468889987521  1111   12      234456788888888 7776654       


Q ss_pred             CceEEEEEcc
Q 046018          173 NCRILRFWLH  182 (310)
Q Consensus       173 ~~~i~~~~~~  182 (310)
                      ..+|+.+++.
T Consensus       242 ~~ri~~v~l~  251 (326)
T PF13449_consen  242 YKRIYRVDLS  251 (326)
T ss_pred             eEEEEEEEcc
Confidence            3577777765

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.19  Score=48.68  Aligned_cols=117  Identities=10%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             ccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      ....+...|+++++ .+-|||....+ .|-+++-++.+..  ...  ..-..+++.+.++++=  =|+-+.+        
T Consensus        48 deHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrcl--ftL--~GHlDYVRt~~FHhey--PWIlSAS--------  112 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCL--FTL--LGHLDYVRTVFFHHEY--PWILSAS--------  112 (1202)
T ss_pred             hccCCccceeeecC-CCCeEEecCCccEEEEEecccceeh--hhh--ccccceeEEeeccCCC--ceEEEcc--------
Confidence            44556777999999 88899986654 3666777665542  111  1123467777777774  4555433        


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                              .+.+|..||-+++......++... .-.-.|.|-.. ++|+.+-..+|.+||..|
T Consensus       113 --------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  113 --------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             --------CCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecc
Confidence                    266788899888776655544322 33455777555 888889999999999976

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.06  E-value=0.056  Score=45.97  Aligned_cols=191  Identities=10%  Similarity=0.064  Sum_probs=101.7

Q ss_pred             eceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ..-+.+++ -|.+.+..-. +.|..+|..+...-++...    -..-+.+++.+++|+ ..++.+.              
T Consensus        26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsa----H~~pi~sl~WS~dgr-~LltsS~--------------   85 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSA----HVRPITSLCWSRDGR-KLLTSSR--------------   85 (405)
T ss_pred             cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhc----cccceeEEEecCCCC-EeeeecC--------------
Confidence            44567777 7765555444 4588888887653222211    122356899999999 7777754              


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CC----CCCCee
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LP----GFPDNV  202 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~----~~p~~i  202 (310)
                         +..+..||...|....-..-....-+..+.|..+...++......-++++...+   ....+.. .+    ..++..
T Consensus        86 ---D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dln~sas~~  159 (405)
T KOG1273|consen   86 ---DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDLNSSASHG  159 (405)
T ss_pred             ---CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCccccccccccc
Confidence               566888988777543211111223466777765556665555555555555432   1122221 11    234555


Q ss_pred             EECCCCCEEEEEecCCccceeeeeeccc-cccEEeeccchh-hhhcccccCCCCceEEEEECCCCCEEEEEE
Q 046018          203 RSNSNGEFWVALHAKKGLFGKLILLNSW-LGKTLLKLPLSF-RQLHSLLVGGKPHATAIKLSEKGEVLEVLE  272 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~  272 (310)
                      .+|+.|++.++....+.     +..+++ +-+.+..+.... ...-.+.+....  ..+.++...++++.|.
T Consensus       160 ~fdr~g~yIitGtsKGk-----llv~~a~t~e~vas~rits~~~IK~I~~s~~g--~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  160 VFDRRGKYIITGTSKGK-----LLVYDAETLECVASFRITSVQAIKQIIVSRKG--RFLIINTSDRVIRTYE  224 (405)
T ss_pred             cccCCCCEEEEecCcce-----EEEEecchheeeeeeeechheeeeEEEEeccC--cEEEEecCCceEEEEe
Confidence            78999976655555454     455543 334443332221 111122222222  2345566667777774

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.02  E-value=0.14  Score=48.92  Aligned_cols=186  Identities=12%  Similarity=0.110  Sum_probs=111.2

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....++++. =|+ .+++...+-|-++|..+|..+.-....+ .......++++|.-++ +.++...            
T Consensus       449 ~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~-ah~~~V~gla~D~~n~-~~vsa~~------------  513 (910)
T KOG1539|consen  449 INATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP-AHKGEVTGLAVDGTNR-LLVSAGA------------  513 (910)
T ss_pred             cceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCc-cccCceeEEEecCCCc-eEEEccC------------
Confidence            4555777777 444 5555444459999999886543221100 1122468999999998 8887643            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                           .|-+..||..++....-..-...+.+|....... +++.....=.|.++|..+.+.  .+.+....+....++++
T Consensus       514 -----~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  514 -----DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFWGHGNRITDMTFS  585 (910)
T ss_pred             -----cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhhccccceeeeEeC
Confidence                 7778888887554333223344567777777665 555545666888888653211  11222222345789999


Q ss_pred             CCCCEEEEEecCCccceeeeee-ccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEE
Q 046018          206 SNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLE  272 (310)
Q Consensus       206 ~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~  272 (310)
                      +||+..++..-...     |.. +-+++.++..+.++.++            .-++++|+|.++.+..
T Consensus       586 ~DgrWlisasmD~t-----Ir~wDlpt~~lID~~~vd~~~------------~sls~SPngD~LAT~H  636 (910)
T KOG1539|consen  586 PDGRWLISASMDST-----IRTWDLPTGTLIDGLLVDSPC------------TSLSFSPNGDFLATVH  636 (910)
T ss_pred             CCCcEEEEeecCCc-----EEEEeccCcceeeeEecCCcc------------eeeEECCCCCEEEEEE
Confidence            99975554443333     444 44788888776554322            2356677776665543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.00  E-value=0.18  Score=45.03  Aligned_cols=141  Identities=12%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             eceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .+.|+.++ .|...++... ..||.+...+|.+-.+...    -...+..+.++.||. .+|+.+.              
T Consensus        84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~a----HYQ~ITcL~fs~dgs-~iiTgsk--------------  143 (476)
T KOG0646|consen   84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSA----HYQSITCLKFSDDGS-HIITGSK--------------  143 (476)
T ss_pred             eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHh----hccceeEEEEeCCCc-EEEecCC--------------
Confidence            45788888 8876666644 4599999998876433221    223467888999998 7777643              


Q ss_pred             CCCCceEEEEeCCC-------CeEEEE--ecCC-cccceEEEecC--CCeEEEEecCCceEEEEEccCCCCCcceeeee-
Q 046018          128 GDKTGRLLKYEKTT-------KEVTIL--LQGL-AFANGVALSRD--RTFILIAETSNCRILRFWLHGPNSGKQDVFAE-  194 (310)
Q Consensus       128 ~~~~g~v~~~d~~~-------~~~~~~--~~~~-~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-  194 (310)
                         +|.|..|...+       .....+  .... .....+.+.+.  ..+||-+ +.++++.+||...+     .++.. 
T Consensus       144 ---Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g-----~LLlti  214 (476)
T KOG0646|consen  144 ---DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLG-----VLLLTI  214 (476)
T ss_pred             ---CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccc-----eeeEEE
Confidence               77788775421       000000  0010 11123333332  2235654 66788899988754     22332 


Q ss_pred             -CCCCCCeeEECCCC-CEEEEEecCC
Q 046018          195 -LPGFPDNVRSNSNG-EFWVALHAKK  218 (310)
Q Consensus       195 -~~~~p~~i~~d~~G-~l~va~~~~~  218 (310)
                       +|..+..+++||-+ .+|+++..+.
T Consensus       215 ~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  215 TFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             ecCCcceeEEEcccccEEEecCCcce
Confidence             56677899999988 5777766544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=96.99  E-value=0.019  Score=51.01  Aligned_cols=149  Identities=13%  Similarity=0.106  Sum_probs=88.7

Q ss_pred             cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           44 HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        44 ~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ...+...+++++.+...||++...+.|+.+|.+.....+....   .....-..+|.+.+|. ++.+.+           
T Consensus       342 KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~-ylA~GS-----------  406 (514)
T KOG2055|consen  342 KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGS-YLATGS-----------  406 (514)
T ss_pred             eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee---cCccceeeeeecCCCc-eEEecc-----------
Confidence            3457788999998454677775556699999988765443322   1223566789999998 444433           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEE----EEe---cCCcccceEEEecCCCeEEEEecCCc-eEEEEEccCCCCCcceeeeeC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVT----ILL---QGLAFANGVALSRDRTFILIAETSNC-RILRFWLHGPNSGKQDVFAEL  195 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~----~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~  195 (310)
                            ..|-|-.||.++-...    ++.   +-....+.|.|++|...|-+++.... .+...-.     ....+|.+.
T Consensus       407 ------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-----PS~TVFsNf  475 (514)
T KOG2055|consen  407 ------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-----PSCTVFSNF  475 (514)
T ss_pred             ------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-----cceeeeccC
Confidence                  3777777875432111    111   11123568999999997777655433 3333322     123445443


Q ss_pred             C------CCCCeeEECCCCCEEEEEecCC
Q 046018          196 P------GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       196 ~------~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      |      +.+..|+++|.|-+....+..+
T Consensus       476 P~~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  476 PTSNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             CCCCCcccceEEEEecCCCceEEeecCCC
Confidence            3      4668899999665444444444

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.95  E-value=0.033  Score=47.73  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             eeceEEEeCCCCcEEEEECC-------------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCC
Q 046018           48 RPLGIRFDKKTGDLYIADAY-------------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST  114 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~-------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~  114 (310)
                      +.+|||+.. ..--||+...             .|=..+|..++++  ++.     .+..|.+-... +|+ ||+.++. 
T Consensus       153 HLNGlA~~~-g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~ev--l~~-----GLsmPhSPRWh-dgr-Lwvldsg-  221 (335)
T TIGR03032       153 HLNGMALDD-GEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEV--VAS-----GLSMPHSPRWY-QGK-LWLLNSG-  221 (335)
T ss_pred             eecceeeeC-CeEEEEEEeeccCCcccccccccCCeEEEEeCCCCE--EEc-----CccCCcCCcEe-CCe-EEEEECC-
Confidence            566999865 3334655432             1222245554432  221     12234433333 577 9999976 


Q ss_pred             chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEe
Q 046018          115 SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~  170 (310)
                                      .|.+.++|+++|+.+++..-...|.|+++.  |+.++|+-
T Consensus       222 ----------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm  259 (335)
T TIGR03032       222 ----------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL  259 (335)
T ss_pred             ----------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence                            889999999989999988888899999998  77666653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.93  E-value=0.033  Score=47.22  Aligned_cols=102  Identities=18%  Similarity=0.293  Sum_probs=72.0

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE---EecCCcccceEEEecCCCeEEEEe
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI---LLQGLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~~~gi~~~~d~~~lyv~~  170 (310)
                      .++++.+.|... |.++.+.                 ++.|-.||......+.   +.........|.+.|.|.+|.+. 
T Consensus       174 evn~l~FHPre~-ILiS~sr-----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-  234 (430)
T KOG0640|consen  174 EVNDLDFHPRET-ILISGSR-----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-  234 (430)
T ss_pred             cccceeecchhh-eEEeccC-----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-
Confidence            478899999998 9988754                 7788888865333322   22233345689999999988876 


Q ss_pred             cCCceEEEEEccCCCCCcceeeee-CC-----CCCCeeEECCCCCEEEEEecCCc
Q 046018          171 TSNCRILRFWLHGPNSGKQDVFAE-LP-----GFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~~~~-~~-----~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +.+..+..||.++     .+.+.. .|     +....+..++.|+|||.....+.
T Consensus       235 TdHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~  284 (430)
T KOG0640|consen  235 TDHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA  284 (430)
T ss_pred             cCCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEeccCCc
Confidence            7889999999763     344433 22     22345778999999999887775

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=96.89  E-value=0.022  Score=49.88  Aligned_cols=107  Identities=10%  Similarity=0.020  Sum_probs=71.6

Q ss_pred             cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .+....+.+..+.-+|.......-+-.+|.++..+.+.+....-.-.+.-+.++++|++. ...+.+             
T Consensus       341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS-------------  406 (459)
T KOG0288|consen  341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGS-------------  406 (459)
T ss_pred             CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc-eeeecc-------------
Confidence            356677777773335666644455888899988876655432211223467789999998 444432             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCc---ccceEEEecCCCeEEEEe
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLA---FANGVALSRDRTFILIAE  170 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~---~~~gi~~~~d~~~lyv~~  170 (310)
                          .+|.|+.|+..+++++.......   ....++|+|-|..|.-++
T Consensus       407 ----~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  407 ----ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             ----CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence                38899999999999987553322   346788999888777664

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.88  E-value=0.0025  Score=33.81  Aligned_cols=26  Identities=35%  Similarity=0.621  Sum_probs=21.1

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEE
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVV   73 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~   73 (310)
                      ..|+||++++ +|+|||++.. +.|.++
T Consensus         2 ~~P~gvav~~-~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDS-DGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeC-CCCEEEEECCCCEEEEC
Confidence            4799999997 9999999987 346543

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.87  E-value=0.34  Score=44.08  Aligned_cols=153  Identities=9%  Similarity=0.068  Sum_probs=84.9

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec------CCc--cccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA------AGQ--PLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~------~~~--~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      ....+.+++-.+.|.++......-.+|.++..+..+....      ...  -....++.+..|+.+-.+++.+       
T Consensus       216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s-------  288 (641)
T KOG0772|consen  216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS-------  288 (641)
T ss_pred             ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec-------
Confidence            4457888873334555544444666788876544333221      011  1122344445555443444443       


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCC--eEEEEecCCc-----ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTK--EVTILLQGLA-----FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF  192 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~--~~~~~~~~~~-----~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~  192 (310)
                                .+|.+..||...-  +.+++.+...     .+.-.+|++|++ ++.+...++.|..|+.........-.+
T Consensus       289 ----------~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~v  357 (641)
T KOG0772|consen  289 ----------YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKV  357 (641)
T ss_pred             ----------CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEe
Confidence                      3777777776543  2333332221     256789999998 677888899999998643222111122


Q ss_pred             ee--CC-CCCCeeEECCCCCEEEEEecCC
Q 046018          193 AE--LP-GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       193 ~~--~~-~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      ..  .+ .....|.|+.+|++..+-....
T Consensus       358 k~AH~~g~~Itsi~FS~dg~~LlSRg~D~  386 (641)
T KOG0772|consen  358 KDAHLPGQDITSISFSYDGNYLLSRGFDD  386 (641)
T ss_pred             eeccCCCCceeEEEeccccchhhhccCCC
Confidence            22  22 2357799999998877644433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.83  E-value=0.12  Score=46.36  Aligned_cols=166  Identities=16%  Similarity=0.231  Sum_probs=73.2

Q ss_pred             ceeceEEEeCCCCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      ..||-...-+ +|+++|+..+       +|++.+|.++-.+........+ ...+..++-..|..+ +.+++.-..+...
T Consensus       130 s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~-~~~~gYDfw~qpr~n-vMiSSeWg~P~~~  206 (461)
T PF05694_consen  130 SRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG-PQPFGYDFWYQPRHN-VMISSEWGAPSMF  206 (461)
T ss_dssp             EEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T-T------EEEETTTT-EEEE-B---HHHH
T ss_pred             CCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC-CCCCCCCeEEcCCCC-EEEEeccCChhhc
Confidence            5788887778 8999998764       2489999887655433332222 234667888889888 7777643211100


Q ss_pred             h--hhhh-hh-----------------------------------------------cCCCCceEEEEeC-CCCeEE--E
Q 046018          120 Q--FMSS-IL-----------------------------------------------SGDKTGRLLKYEK-TTKEVT--I  146 (310)
Q Consensus       120 ~--~~~~-~~-----------------------------------------------~~~~~g~v~~~d~-~~~~~~--~  146 (310)
                      .  ...+ +.                                               ...-++.|++|-. +.++.+  .
T Consensus       207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~k  286 (461)
T PF05694_consen  207 EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEK  286 (461)
T ss_dssp             TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEE
T ss_pred             ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeE
Confidence            0  0000 00                                               0111233444432 223221  1


Q ss_pred             Eec------------C--------CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcc--eee------------
Q 046018          147 LLQ------------G--------LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQ--DVF------------  192 (310)
Q Consensus       147 ~~~------------~--------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~--~~~------------  192 (310)
                      +.+            .        .+-+..|.++-|.++||++...++.|.+||+.....-+.  +++            
T Consensus       287 Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~  366 (461)
T PF05694_consen  287 VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPV  366 (461)
T ss_dssp             EEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TT
T ss_pred             EEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcc
Confidence            110            0        012467889999999999999999999999874311000  001            


Q ss_pred             -e--eCCCCCCeeEECCCC-CEEEEEe
Q 046018          193 -A--ELPGFPDNVRSNSNG-EFWVALH  215 (310)
Q Consensus       193 -~--~~~~~p~~i~~d~~G-~l~va~~  215 (310)
                       .  .+.+.|.-+.++-|| +|||++.
T Consensus       367 v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  367 VKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             S------S----EEE-TTSSEEEEE--
T ss_pred             ccccccCCCCCeEEEccCCeEEEEEee
Confidence             0  123567888999999 6888764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.81  E-value=0.048  Score=45.33  Aligned_cols=151  Identities=14%  Similarity=0.025  Sum_probs=84.5

Q ss_pred             EEEEEeCCCCC---eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-----Cc-eEEEeCCCCeE
Q 046018           10 RILKWQGDELG---WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-----LG-FQVVGPEGGLA   80 (310)
Q Consensus        10 ~i~~~~~~~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-----~g-i~~~d~~~~~~   80 (310)
                      .|++.+.+-..   -++.++..+..||+.+.+.............+.++. +|++.++...     .+ |..++.+....
T Consensus        54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~  132 (327)
T KOG0643|consen   54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS  132 (327)
T ss_pred             eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence            45555554443   345555666667776644222233334445788888 6766555443     12 55555442110


Q ss_pred             -----EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcc
Q 046018           81 -----TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAF  153 (310)
Q Consensus        81 -----~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~  153 (310)
                           +++...+  .+-..+..+..+|-+.+|..+.                  .+|.|-.||..+|...+-.  .....
T Consensus       133 ~~~s~ep~~kI~--t~~skit~a~Wg~l~~~ii~Gh------------------e~G~is~~da~~g~~~v~s~~~h~~~  192 (327)
T KOG0643|consen  133 DIDSEEPYLKIP--TPDSKITSALWGPLGETIIAGH------------------EDGSISIYDARTGKELVDSDEEHSSK  192 (327)
T ss_pred             hhcccCceEEec--CCccceeeeeecccCCEEEEec------------------CCCcEEEEEcccCceeeechhhhccc
Confidence                 1121211  1124567777888888444333                  5889999999877443321  12235


Q ss_pred             cceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          154 ANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                      .+.|.+++|.. .+++.+....-..+|..
T Consensus       193 Ind~q~s~d~T-~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  193 INDLQFSRDRT-YFITGSKDTTAKLVDVR  220 (327)
T ss_pred             cccccccCCcc-eEEecccCccceeeecc
Confidence            78999999987 67776665555555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.78  E-value=0.33  Score=45.59  Aligned_cols=164  Identities=17%  Similarity=0.105  Sum_probs=90.4

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh-hhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ-RRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~-~~~~~~~  124 (310)
                      .+.+.+++-| +|. |.++ .+..++.+|++.|.+-...+...    ...+.+|.+.||. .+.+....+.- .+...+ 
T Consensus        13 hci~d~afkP-DGsqL~lA-Ag~rlliyD~ndG~llqtLKgHK----DtVycVAys~dGk-rFASG~aDK~VI~W~~kl-   84 (1081)
T KOG1538|consen   13 HCINDIAFKP-DGTQLILA-AGSRLLVYDTSDGTLLQPLKGHK----DTVYCVAYAKDGK-RFASGSADKSVIIWTSKL-   84 (1081)
T ss_pred             cchheeEECC-CCceEEEe-cCCEEEEEeCCCccccccccccc----ceEEEEEEccCCc-eeccCCCceeEEEecccc-
Confidence            4778899999 664 5554 55679999998876433322211    2478899999999 77766543210 000000 


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEe-------------c----------------CCcccceEEEecCCCeEEEEecCCce
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILL-------------Q----------------GLAFANGVALSRDRTFILIAETSNCR  175 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~-------------~----------------~~~~~~gi~~~~d~~~lyv~~~~~~~  175 (310)
                            . .+++|... ...+.+.             .                .....++.+|..||..+.+ ...+++
T Consensus        85 ------E-G~LkYSH~-D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylal-G~~nGT  155 (1081)
T KOG1538|consen   85 ------E-GILKYSHN-DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL-GMFNGT  155 (1081)
T ss_pred             ------c-ceeeeccC-CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEE-eccCce
Confidence                  1 12222211 1111110             0                0112358899999985554 478888


Q ss_pred             EEEEEccCCCCCcceeeeeCCCCC----CeeEECCC---C---CEEEEEecCCccceeeeeeccccccEEee
Q 046018          176 ILRFWLHGPNSGKQDVFAELPGFP----DNVRSNSN---G---EFWVALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~p----~~i~~d~~---G---~l~va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                      |..-+..+.    .....+-||.|    .++++.+.   |   -+-|++|+..      +..+.-.|+++.+
T Consensus       156 IsiRNk~gE----ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT------LSFy~LsG~~Igk  217 (1081)
T KOG1538|consen  156 ISIRNKNGE----EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT------LSFYQLSGKQIGK  217 (1081)
T ss_pred             EEeecCCCC----cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce------eEEEEecceeecc
Confidence            887754432    22222323222    45666543   2   3556666654      6777778888763

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.77  E-value=0.22  Score=44.35  Aligned_cols=150  Identities=11%  Similarity=0.125  Sum_probs=90.1

Q ss_pred             eeceEEEeCCCCc-EEEEECCC-----ceEEEeCCCCeEEEEEeecCCccccCCcceEEe-CCCCE-EEEEeCCCchhhh
Q 046018           48 RPLGIRFDKKTGD-LYIADAYL-----GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID-EHKGV-IYFTDSSTSFQRR  119 (310)
Q Consensus        48 ~p~gl~~d~~~g~-l~v~~~~~-----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~g~~-l~v~~~~~~~~~~  119 (310)
                      ....+.+.+ ++. |++....+     .+..+|+.++..+.+.......-+.....+.+. +++.. +|++. .      
T Consensus       185 yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~------  256 (353)
T PF00930_consen  185 YLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-R------  256 (353)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-T------
T ss_pred             CcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-c------
Confidence            344677777 555 77776542     277778887776655544322222233445543 44443 44444 2      


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecC----CceEEEEEcc-CCCCCcceeee
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETS----NCRILRFWLH-GPNSGKQDVFA  193 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~----~~~i~~~~~~-~~~~~~~~~~~  193 (310)
                               +.-..|+.++.+++..+.+..+.-.. .-+.++++++.+|++...    ...||+.+.+ ++   ..+.+.
T Consensus       257 ---------~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT  324 (353)
T PF00930_consen  257 ---------DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLT  324 (353)
T ss_dssp             ---------TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESS
T ss_pred             ---------CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEecc
Confidence                     12446999999887766554443333 357788998889887664    5689999887 43   334443


Q ss_pred             eCCCCCC-eeEECCCCCEEEEEecCC
Q 046018          194 ELPGFPD-NVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       194 ~~~~~p~-~i~~d~~G~l~va~~~~~  218 (310)
                      ... ... .+.++++|+.++-...+.
T Consensus       325 ~~~-~~~~~~~~Spdg~y~v~~~s~~  349 (353)
T PF00930_consen  325 CED-GDHYSASFSPDGKYYVDTYSGP  349 (353)
T ss_dssp             TTS-STTEEEEE-TTSSEEEEEEESS
T ss_pred             CCC-CCceEEEECCCCCEEEEEEcCC
Confidence            322 234 799999999988877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=96.75  E-value=0.058  Score=47.20  Aligned_cols=144  Identities=15%  Similarity=0.163  Sum_probs=92.4

Q ss_pred             CcccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCe
Q 046018            2 PYTGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGL   79 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~   79 (310)
                      |+++..+..|..|+.+.+. -+.        .          . ...-...+.++. +|.++++.-.. .|..+|+++++
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~--------l----------~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALIT--------L----------D-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             HhhccCCceEEEEeccCCceeee--------c----------C-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCc
Confidence            4566777788888887753 221        0          0 123445788888 88988888774 59999999987


Q ss_pred             EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEE-
Q 046018           80 ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA-  158 (310)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~-  158 (310)
                      +..-.   .+-....+..+.+-.+|. ++.|.-.              ++..-.+-.||++.=+.-.....+...||+. 
T Consensus       207 ~v~e~---~~heG~k~~Raifl~~g~-i~tTGfs--------------r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~  268 (472)
T KOG0303|consen  207 VVSEG---VAHEGAKPARAIFLASGK-IFTTGFS--------------RMSERQIALWDPNNLEEPIALQELDTSNGVLL  268 (472)
T ss_pred             Eeeec---ccccCCCcceeEEeccCc-eeeeccc--------------cccccceeccCcccccCcceeEEeccCCceEE
Confidence            54332   122334666777788887 6655432              1123346677775322212233445566764 


Q ss_pred             --EecCCCeEEEEecCCceEEEEEccC
Q 046018          159 --LSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       159 --~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                        +++|.+.+|++.-+.+.|.-|....
T Consensus       269 PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  269 PFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             eeecCCCCEEEEEecCCcceEEEEecC
Confidence              5889999999999999999888754

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.71  E-value=0.4  Score=45.17  Aligned_cols=80  Identities=10%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCcccc-CC-cceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLR-FT-NDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~-~~-~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .++++.  +++||+++....|+.+|.++++.. ........... .. ..-++ .++. +|++.....+           
T Consensus       114 rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~-W~~~~~~~~~~~~~tssP~v-~~g~-Vivg~~~~~~-----------  177 (527)
T TIGR03075       114 RGVALY--DGKVFFGTLDARLVALDAKTGKVV-WSKKNGDYKAGYTITAAPLV-VKGK-VITGISGGEF-----------  177 (527)
T ss_pred             ccceEE--CCEEEEEcCCCEEEEEECCCCCEE-eecccccccccccccCCcEE-ECCE-EEEeeccccc-----------
Confidence            355664  478999987777999999998752 11111111000 00 11112 2555 8887643211           


Q ss_pred             CCCCceEEEEeCCCCeEEE
Q 046018          128 GDKTGRLLKYEKTTKEVTI  146 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~  146 (310)
                       ...|.|+.+|.++|+..-
T Consensus       178 -~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       178 -GVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             -CCCcEEEEEECCCCceeE
Confidence             125778899998887653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.69  E-value=0.56  Score=43.99  Aligned_cols=176  Identities=10%  Similarity=-0.013  Sum_probs=102.0

Q ss_pred             cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+|++.. +++|+-....+.|..+|+-+.+...-.+.    ....++.|++.|.+..+-|+-              
T Consensus        69 drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~----~gg~IWsiai~p~~~~l~Igc--------------  129 (691)
T KOG2048|consen   69 DRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDS----NGGAIWSIAINPENTILAIGC--------------  129 (691)
T ss_pred             CCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecC----CCcceeEEEeCCccceEEeec--------------
Confidence            35777999987 89999887777799999988765433322    223578999999888555652              


Q ss_pred             hcCCCCceEEEEeCCCCeEEE--EecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce--eeeeCC-CC-
Q 046018          126 LSGDKTGRLLKYEKTTKEVTI--LLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD--VFAELP-GF-  198 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~--~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~--~~~~~~-~~-  198 (310)
                          .+|-++.++...+..+-  ..... ...-.+.+.|++.++. +.+-.+.|.+||...+..-...  .+..+. +. 
T Consensus       130 ----ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~  204 (691)
T KOG2048|consen  130 ----DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP  204 (691)
T ss_pred             ----CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceEEEEEcCCCceEEEeeecccccccCCc
Confidence                15555555554444432  11111 2345788888887544 5566778999987643221100  011111 11 


Q ss_pred             --CCeeEECCCCCEEEEEecCCccceeeeee-ccccccEEeeccchhhhhcccccC
Q 046018          199 --PDNVRSNSNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKLPLSFRQLHSLLVG  251 (310)
Q Consensus       199 --p~~i~~d~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~~~~~~~~~  251 (310)
                        ..++.+=.++.|.-++..+.      +.. +...|.+++.+......+.+++..
T Consensus       205 ~iVWSv~~Lrd~tI~sgDS~G~------V~FWd~~~gTLiqS~~~h~adVl~Lav~  254 (691)
T KOG2048|consen  205 TIVWSVLFLRDSTIASGDSAGT------VTFWDSIFGTLIQSHSCHDADVLALAVA  254 (691)
T ss_pred             eEEEEEEEeecCcEEEecCCce------EEEEcccCcchhhhhhhhhcceeEEEEc
Confidence              24555557787766665544      333 345666665554443334344333

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.68  E-value=0.024  Score=48.24  Aligned_cols=151  Identities=12%  Similarity=0.115  Sum_probs=82.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeec-CCcc---ccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEA-AGQP---LRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~-~~~~---~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      .++.-..++| +|.-.+...-+| |-++|..+++++.-...- .+..   ......|.++.|.. +..+.+         
T Consensus       214 Sh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGs---------  282 (508)
T KOG0275|consen  214 SHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGS---------  282 (508)
T ss_pred             cchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccC---------
Confidence            4566677888 888777766677 777888888765422110 0100   01234555666665 444432         


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEec--CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQ--GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP  199 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  199 (310)
                              .+|.+-.|...+|.+-.-.+  .-.+...+.|+.|+..++-+ +....+.+--+..++.  ...+..-..+.
T Consensus       283 --------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~-sfD~tvRiHGlKSGK~--LKEfrGHsSyv  351 (508)
T KOG0275|consen  283 --------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA-SFDQTVRIHGLKSGKC--LKEFRGHSSYV  351 (508)
T ss_pred             --------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc-cccceEEEeccccchh--HHHhcCccccc
Confidence                    36777777666675533111  12335678899998865544 5555555543332211  11121112244


Q ss_pred             CeeEECCCCCEEEEEecCCc
Q 046018          200 DNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       200 ~~i~~d~~G~l~va~~~~~~  219 (310)
                      +...+.+||+-.++....+.
T Consensus       352 n~a~ft~dG~~iisaSsDgt  371 (508)
T KOG0275|consen  352 NEATFTDDGHHIISASSDGT  371 (508)
T ss_pred             cceEEcCCCCeEEEecCCcc
Confidence            56677788876666655554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.68  E-value=0.37  Score=41.85  Aligned_cols=114  Identities=13%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....-+.++. +|.+.++..-.| |..+...++..+..+..    +...+.=+..+|.++ ++++.+             
T Consensus       107 DSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~----e~~dieWl~WHp~a~-illAG~-------------  167 (399)
T KOG0296|consen  107 DSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQ----EVEDIEWLKWHPRAH-ILLAGS-------------  167 (399)
T ss_pred             CceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeec----ccCceEEEEeccccc-EEEeec-------------
Confidence            3455677877 666555443344 67777776654322221    112233356778888 666654             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                          .+|.++.|...++....+..+...| +.=.+.|||+++... ..++.|.+|++..+
T Consensus       168 ----~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  168 ----TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPKTG  222 (399)
T ss_pred             ----CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEE-ecCceEEEEecCCC
Confidence                3888999987664444444443333 344688999977665 45789999999854

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.67  E-value=0.073  Score=49.86  Aligned_cols=82  Identities=18%  Similarity=0.374  Sum_probs=50.0

Q ss_pred             ccccCCcceEEeCCCCEEEEEeCCCchhhh--hhhhhhhcCCCCceEEEEeCCCC-------eEEEEec-----------
Q 046018           90 QPLRFTNDLDIDEHKGVIYFTDSSTSFQRR--QFMSSILSGDKTGRLLKYEKTTK-------EVTILLQ-----------  149 (310)
Q Consensus        90 ~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~--~~~~~~~~~~~~g~v~~~d~~~~-------~~~~~~~-----------  149 (310)
                      .+..+|.+|.++|....+|++.+.......  ............|.|++|+++.+       +++.+..           
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            356689999999875459999754321000  00000012345678999998765       4444321           


Q ss_pred             -------CCcccceEEEecCCCeEEEEecC
Q 046018          150 -------GLAFANGVALSRDRTFILIAETS  172 (310)
Q Consensus       150 -------~~~~~~gi~~~~d~~~lyv~~~~  172 (310)
                             .+..|..|+++++|+ |||++-.
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~  455 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDG  455 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCC-EEEEeCC
Confidence                   134688999999998 7776543

>PHA02713 hypothetical protein; Provisional

Probab=96.63  E-value=0.66  Score=44.12  Aligned_cols=93  Identities=15%  Similarity=0.127  Sum_probs=51.4

Q ss_pred             CCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           58 TGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        58 ~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      ++.||+....       ..+.++|+.+.....+...    +......-++.-+|+ ||+......            ...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m----~~~R~~~~~~~~~g~-IYviGG~~~------------~~~  365 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM----IKNRCRFSLAVIDDT-IYAIGGQNG------------TNV  365 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC----cchhhceeEEEECCE-EEEECCcCC------------CCC
Confidence            5789998653       1278899988865433221    111222233444677 998753210            011


Q ss_pred             CceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEe
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAE  170 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~  170 (310)
                      ...+.+||+.+.++..+.+ ++.+   .+++. -+++ +|+..
T Consensus       366 ~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g~-IYviG  405 (557)
T PHA02713        366 ERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQY-IYIIG  405 (557)
T ss_pred             CceEEEEECCCCeEEECCC-CCcccccccEEE-ECCE-EEEEe
Confidence            3458999999888876543 2222   22332 2454 88864

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.62  E-value=0.47  Score=42.30  Aligned_cols=155  Identities=19%  Similarity=0.267  Sum_probs=79.1

Q ss_pred             eEEEeCC--CCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEe----CCCCE--EEEEeCCCchhhhhh
Q 046018           51 GIRFDKK--TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID----EHKGV--IYFTDSSTSFQRRQF  121 (310)
Q Consensus        51 gl~~d~~--~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d----~~g~~--l~v~~~~~~~~~~~~  121 (310)
                      .|.+++.  ...+++++.. .|++.+|.+++.+..+.   .+    .+|.+-+-    -.|+.  |.+++....      
T Consensus        58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~---~G----r~NNVDvrygf~l~g~~vDlavas~R~~------  124 (381)
T PF02333_consen   58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLP---VG----RPNNVDVRYGFPLNGKTVDLAVASDRSD------  124 (381)
T ss_dssp             EEE--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE----SS-----EEEEEEEEEEEETTEEEEEEEEEE-CC------
T ss_pred             cEecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeec---CC----CcceeeeecceecCCceEEEEEEecCcC------
Confidence            3555531  3356666665 67999999987765441   11    33433321    12332  223321100      


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEe-------cCCcccceEEEecC---CCeEEEEecCCceEEEEEccCCCCCc--c
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILL-------QGLAFANGVALSRD---RTFILIAETSNCRILRFWLHGPNSGK--Q  189 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~-------~~~~~~~gi~~~~d---~~~lyv~~~~~~~i~~~~~~~~~~~~--~  189 (310)
                            +...=++|++|++++.++.+.       .....+.|+|+..+   |+.-.+....++.+..|.+.....+.  .
T Consensus       125 ------g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~  198 (381)
T PF02333_consen  125 ------GRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA  198 (381)
T ss_dssp             ------CT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE
T ss_pred             ------CCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee
Confidence                  001225888898888776543       23344779999753   55322344567888888775211221  1


Q ss_pred             eeeee--CCCCCCeeEECCC-CCEEEEEecCCccceeeeeeccc
Q 046018          190 DVFAE--LPGFPDNVRSNSN-GEFWVALHAKKGLFGKLILLNSW  230 (310)
Q Consensus       190 ~~~~~--~~~~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~~~  230 (310)
                      +.+..  .+..+.++++|.. |.||++.-..+      |.+|.+
T Consensus       199 ~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G------IW~y~A  236 (381)
T PF02333_consen  199 TLVREFKVGSQPEGCVVDDETGRLYVGEEDVG------IWRYDA  236 (381)
T ss_dssp             EEEEEEE-SS-EEEEEEETTTTEEEEEETTTE------EEEEES
T ss_pred             EEEEEecCCCcceEEEEecccCCEEEecCccE------EEEEec
Confidence            23333  4567888888754 79999987765      666653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.54  E-value=0.22  Score=44.47  Aligned_cols=110  Identities=14%  Similarity=0.218  Sum_probs=67.4

Q ss_pred             ceEEEeCC--CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           50 LGIRFDKK--TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        50 ~gl~~d~~--~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ..|.++..  +.+||-+...+-+..+|...+.+-.-+..     -..+..+++||.++++|+++.               
T Consensus       178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-----p~si~av~lDpae~~~yiGt~---------------  237 (476)
T KOG0646|consen  178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-----PSSIKAVALDPAERVVYIGTE---------------  237 (476)
T ss_pred             EEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-----CCcceeEEEcccccEEEecCC---------------
Confidence            34555541  34677776655566778887764322221     125789999999998999874               


Q ss_pred             CCCCceEEEEeC-----------------CCCeEEEEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          128 GDKTGRLLKYEK-----------------TTKEVTILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       128 ~~~~g~v~~~d~-----------------~~~~~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                         .|.++..+.                 +..+...+...  ......++++-||. |+++...++.|-+||+..
T Consensus       238 ---~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  238 ---EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             ---cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence               444444332                 11111211111  12456899999998 777777889999999763

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=96.49  E-value=0.043  Score=48.13  Aligned_cols=180  Identities=11%  Similarity=0.095  Sum_probs=101.3

Q ss_pred             EEEEEeCCCCCeEEEEE-eccccccccCCCCCcccccc-ceeceEEEeCCCCcEEEEECCCceEE-EeCCCCeEEEEEee
Q 046018           10 RILKWQGDELGWTEFAV-TTSQRKECVRPFAPDIEHIC-GRPLGIRFDKKTGDLYIADAYLGFQV-VGPEGGLATQLVTE   86 (310)
Q Consensus        10 ~i~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~~g~l~v~~~~~gi~~-~d~~~~~~~~~~~~   86 (310)
                      .+.+|.++..+.+.+.. +....++-..=.|+.+.... .-...|.++. +|.-.|....+|..+ +.+.-..+..+ ..
T Consensus       100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnVk~~-~a  177 (464)
T KOG0284|consen  100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNVKII-QA  177 (464)
T ss_pred             eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhhHHh-hH
Confidence            56778887665332222 22333333332222222222 2345788887 665445544456444 45543332211 11


Q ss_pred             cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCe
Q 046018           87 AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTF  165 (310)
Q Consensus        87 ~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~  165 (310)
                         .....+++++++|+.. -+++-+.                 +|.|..||....+-+.+..+ .-.+..+.+.|... 
T Consensus       178 ---hh~eaIRdlafSpnDs-kF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-  235 (464)
T KOG0284|consen  178 ---HHAEAIRDLAFSPNDS-KFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-  235 (464)
T ss_pred             ---hhhhhhheeccCCCCc-eeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-
Confidence               1123688999999877 7777644                 78898998654444333333 33477899999876 


Q ss_pred             EEEEecCCceEEEEEccCCCCCcceeeeeC---CCCCCeeEECCCCCEEEEEecCC
Q 046018          166 ILIAETSNCRILRFWLHGPNSGKQDVFAEL---PGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       166 lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      |+++.+.++-|-.+|+..+     ..+..+   ....-++.+.++|++..+.....
T Consensus       236 LiasgskDnlVKlWDprSg-----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~  286 (464)
T KOG0284|consen  236 LIASGSKDNLVKLWDPRSG-----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ  286 (464)
T ss_pred             eeEEccCCceeEeecCCCc-----chhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence            7777777778888888743     112221   12235678888887665554433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.43  E-value=0.2  Score=43.49  Aligned_cols=132  Identities=14%  Similarity=0.148  Sum_probs=77.5

Q ss_pred             ccccccccCCCC-Cccccccceece-EEEeCCCCcEEEEECC---Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEe
Q 046018           28 TSQRKECVRPFA-PDIEHICGRPLG-IRFDKKTGDLYIADAY---LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDID  101 (310)
Q Consensus        28 ~~~~~~~~~~~~-~~~~~~~~~p~g-l~~d~~~g~l~v~~~~---~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d  101 (310)
                      .++.||.+.=.. ..++.....|.| +|+++..++-|++-..   .| |+.+|..+-+....+....+    ..-.|+++
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lAalafs  182 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLAALAFS  182 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----ceeEEEEC
Confidence            355555443111 222334356665 4455544555666543   23 88888776543333332222    35679999


Q ss_pred             CCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE-EeCCCCe-EEEEecC--CcccceEEEecCCCeEEEEecCCceEE
Q 046018          102 EHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK-YEKTTKE-VTILLQG--LAFANGVALSRDRTFILIAETSNCRIL  177 (310)
Q Consensus       102 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~~~~-~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~  177 (310)
                      ++|. +..|.+.                 .|+|.| |...+|+ +..+..+  ......|+|++|+.+|-+ .+.++.|+
T Consensus       183 ~~G~-llATASe-----------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~-sS~TeTVH  243 (391)
T KOG2110|consen  183 PDGT-LLATASE-----------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA-SSNTETVH  243 (391)
T ss_pred             CCCC-EEEEecc-----------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE-ecCCCeEE
Confidence            9999 7777654                 777665 4544443 3333222  223468999999995554 47889999


Q ss_pred             EEEcc
Q 046018          178 RFWLH  182 (310)
Q Consensus       178 ~~~~~  182 (310)
                      +|.++
T Consensus       244 iFKL~  248 (391)
T KOG2110|consen  244 IFKLE  248 (391)
T ss_pred             EEEec
Confidence            99876

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.42  E-value=0.022  Score=33.16  Aligned_cols=42  Identities=21%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             CCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEe
Q 046018          102 EHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALS  160 (310)
Q Consensus       102 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~  160 (310)
                      |++++||+++..                 .+.|..+|+.+++..........|.+|+++
T Consensus         1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            466779999854                 678999999877665544456778888874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.40  E-value=0.47  Score=39.68  Aligned_cols=148  Identities=9%  Similarity=0.015  Sum_probs=88.6

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      +...-+.+|. +-+..++... ..+-.+|.++++.  ++....+   .....+-++.+|+.+.++....+.         
T Consensus        53 GavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~--la~~k~~---~~Vk~~~F~~~gn~~l~~tD~~mg---------  117 (327)
T KOG0643|consen   53 GAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQ--LATWKTN---SPVKRVDFSFGGNLILASTDKQMG---------  117 (327)
T ss_pred             ceEEEEEecC-CcceeeeccccceeEEEEcCCCcE--EEEeecC---CeeEEEeeccCCcEEEEEehhhcC---------
Confidence            4555666776 3333444333 3466778888874  3332112   235667889999966666544321         


Q ss_pred             hcCCCCceEEEEeCCC-------Ce-EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---
Q 046018          126 LSGDKTGRLLKYEKTT-------KE-VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---  194 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~-------~~-~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---  194 (310)
                          ..+.|..+|...       .+ +.++......+.-..|+|-+++++ +...++.|.+||...+.    +.+..   
T Consensus       118 ----~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii-~Ghe~G~is~~da~~g~----~~v~s~~~  188 (327)
T KOG0643|consen  118 ----YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII-AGHEDGSISIYDARTGK----ELVDSDEE  188 (327)
T ss_pred             ----cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE-EecCCCcEEEEEcccCc----eeeechhh
Confidence                245566776542       22 233333445677888999998555 45678999999987431    11111   


Q ss_pred             CCCCCCeeEECCCCCEEEEEecCC
Q 046018          195 LPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       195 ~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      -....+.|.+.++...++......
T Consensus       189 h~~~Ind~q~s~d~T~FiT~s~Dt  212 (327)
T KOG0643|consen  189 HSSKINDLQFSRDRTYFITGSKDT  212 (327)
T ss_pred             hccccccccccCCcceEEecccCc
Confidence            112457899999999888766544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.041  Score=44.16  Aligned_cols=103  Identities=19%  Similarity=0.267  Sum_probs=66.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEE-EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLAT-QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      +.-.||+.|.  .+|++++...-++..||++-+.. .+.-...+.|....|.+..- +|. +|.-...            
T Consensus       131 GeGWgLt~d~--~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~------------  194 (262)
T COG3823         131 GEGWGLTSDD--KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQ------------  194 (262)
T ss_pred             CcceeeecCC--cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeee------------
Confidence            4445888765  46888876655777788764332 12112235556666766643 565 7765532            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec-------------CCcccceEEEecCCCeEEEEe
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ-------------GLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~-------------~~~~~~gi~~~~d~~~lyv~~  170 (310)
                           +.+|.+++|++|++....+             ...-+||||..|++.++|++.
T Consensus       195 -----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         195 -----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             -----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence                 5679999999998875431             112368999999988899974

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.38  E-value=0.54  Score=40.19  Aligned_cols=139  Identities=9%  Similarity=0.065  Sum_probs=81.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC---CEEEEEeCCCchhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK---GVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g---~~l~v~~~~~~~~~~~~  121 (310)
                      +....+|++.    .|++....  .|..+|....+.  +.....  ....++.+.+.+.-   + |.-+           
T Consensus        44 ~sitavAVs~----~~~aSGssDetI~IYDm~k~~q--lg~ll~--HagsitaL~F~~~~S~sh-LlS~-----------  103 (362)
T KOG0294|consen   44 GSITALAVSG----PYVASGSSDETIHIYDMRKRKQ--LGILLS--HAGSITALKFYPPLSKSH-LLSG-----------  103 (362)
T ss_pred             cceeEEEecc----eeEeccCCCCcEEEEeccchhh--hcceec--cccceEEEEecCCcchhh-eeee-----------
Confidence            3445666643    47776552  488888775432  211110  11245556655443   3 3332           


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                             ..+|.+..|+..  .++.+.   ..-...++|++.|.++ |-.+-.+.+.+..||+-.++   .....++...
T Consensus       104 -------sdDG~i~iw~~~--~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr---~a~v~~L~~~  170 (362)
T KOG0294|consen  104 -------SDDGHIIIWRVG--SWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR---VAFVLNLKNK  170 (362)
T ss_pred             -------cCCCcEEEEEcC--CeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc---cceeeccCCc
Confidence                   247888888864  454332   2233479999999998 66665677888888875332   2223345556


Q ss_pred             CCeeEECCCCCEEEEEecCC
Q 046018          199 PDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~  218 (310)
                      +..+.+++.|.-|+...++.
T Consensus       171 at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             ceeeEEcCCCCEEEEEeccE
Confidence            78899999998555444433

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.32  E-value=0.43  Score=42.55  Aligned_cols=173  Identities=18%  Similarity=0.200  Sum_probs=85.1

Q ss_pred             eccccccccCCCCCccccccceec------eEEEeCCCCcEEEEECC----C--ceEEEeCCCCeEEEEEeecC--Cccc
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPL------GIRFDKKTGDLYIADAY----L--GFQVVGPEGGLATQLVTEAA--GQPL   92 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~------gl~~d~~~g~l~v~~~~----~--gi~~~d~~~~~~~~~~~~~~--~~~~   92 (310)
                      .||..||..+++.+.+.  .+++.      |+.+..+.-.|.++...    .  .++++|+.++.++.+.....  ....
T Consensus        78 ~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~  155 (381)
T PF02333_consen   78 GGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDL  155 (381)
T ss_dssp             TEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SS
T ss_pred             CCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCccccccc
Confidence            67888888884433332  24444      44443211124455443    1  28888998887765533210  1122


Q ss_pred             cCCcceEE--eC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEe---CCCCeE----EEEecCCcccceEEEecC
Q 046018           93 RFTNDLDI--DE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYE---KTTKEV----TILLQGLAFANGVALSRD  162 (310)
Q Consensus        93 ~~~~~i~~--d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d---~~~~~~----~~~~~~~~~~~gi~~~~d  162 (310)
                      ..+.++|.  ++ +|. +|+-...                +.|.+..|-   ...+.+    .+-....+.+.|++++..
T Consensus       156 ~e~yGlcly~~~~~g~-~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe  218 (381)
T PF02333_consen  156 SEPYGLCLYRSPSTGA-LYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE  218 (381)
T ss_dssp             SSEEEEEEEE-TTT---EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred             ccceeeEEeecCCCCc-EEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence            34667775  33 466 6655422                245444332   223322    122234567899999998


Q ss_pred             CCeEEEEecCCceEEEEEccCCCCCcceeeeeC-----CCCCCeeEE--CCC--CCEEEEEecCCc
Q 046018          163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-----PGFPDNVRS--NSN--GEFWVALHAKKG  219 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~p~~i~~--d~~--G~l~va~~~~~~  219 (310)
                      ...||+++.. ..||+|+.+.........+...     ..-..||++  .++  |.|+++..+.+.
T Consensus       219 ~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s  283 (381)
T PF02333_consen  219 TGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS  283 (381)
T ss_dssp             TTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred             cCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence            8889999755 7999998874322222333221     122345544  343  456666655544

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.32  E-value=0.095  Score=44.72  Aligned_cols=114  Identities=16%  Similarity=0.219  Sum_probs=63.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+.++.++..+.-+... ...|+ ..++++.   .+...+ -..+.|+..+.+||+++. +.+.            
T Consensus       307 kGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKSGK~---LKEfrG-HsSyvn~a~ft~dG~~ii-saSs------------  368 (508)
T KOG0275|consen  307 KGVTCLSFSRDNSQILSASFD-QTVRIHGLKSGKC---LKEFRG-HSSYVNEATFTDDGHHII-SASS------------  368 (508)
T ss_pred             cCeeEEEEccCcchhhccccc-ceEEEeccccchh---HHHhcC-ccccccceEEcCCCCeEE-EecC------------
Confidence            345567787744445444333 34444 3444442   122222 234789999999999444 4332            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCc---ccceEEEecC-CCeEEEEecCCceEEEEEccCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLA---FANGVALSRD-RTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~---~~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                           +|.|-.|+.+++++..-...++   ..|.+-+-|. ..+++|++ .++.|++.++.|+
T Consensus       369 -----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQ  425 (508)
T KOG0275|consen  369 -----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQ  425 (508)
T ss_pred             -----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccce
Confidence                 7889999987765432111111   1244444443 34566664 4578888887764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.32  E-value=0.11  Score=44.47  Aligned_cols=140  Identities=8%  Similarity=0.056  Sum_probs=82.9

Q ss_pred             CCcEEEEECCCc-eEEEeCCCCeEEEEEeec-CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018           58 TGDLYIADAYLG-FQVVGPEGGLATQLVTEA-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL  135 (310)
Q Consensus        58 ~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (310)
                      +-.||++..... |-.+|.-+++++--...+ .-........++++|||..||.+.                   ...|.
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-------------------krcir  182 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-------------------KRCIR  182 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-------------------cceEE
Confidence            556777766644 777888888764322211 111344578899999999777765                   45677


Q ss_pred             EEeC-CCCeEEE----EecC----CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018          136 KYEK-TTKEVTI----LLQG----LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS  206 (310)
Q Consensus       136 ~~d~-~~~~~~~----~~~~----~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  206 (310)
                      .||. ..|+...    +..+    ..-...++++|-...++...+..+++-+|.-++.  .....+..-.+...-+.+-+
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEecc
Confidence            7775 2232221    1111    1124578999965557777788888888876643  12223322334455678888


Q ss_pred             CCC-EEEEEecCC
Q 046018          207 NGE-FWVALHAKK  218 (310)
Q Consensus       207 ~G~-l~va~~~~~  218 (310)
                      +|+ ||++.....
T Consensus       261 dGn~lfsGaRk~d  273 (406)
T KOG2919|consen  261 DGNKLFSGARKDD  273 (406)
T ss_pred             CcCeecccccCCC
Confidence            885 665554433

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.29  E-value=0.65  Score=40.25  Aligned_cols=168  Identities=13%  Similarity=0.117  Sum_probs=77.3

Q ss_pred             eEEEEEeccccccccCCCCCccc---cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcc
Q 046018           21 WTEFAVTTSQRKECVRPFAPDIE---HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTND   97 (310)
Q Consensus        21 W~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~   97 (310)
                      |+-++...+.+..-.+...+.+.   ...+.+.++.... ++.++++.....|++-.=.+..-+.+...    .....++
T Consensus        75 ~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~~~~G~iy~T~DgG~tW~~~~~~----~~gs~~~  149 (302)
T PF14870_consen   75 WIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELAGDRGAIYRTTDGGKTWQAVVSE----TSGSIND  149 (302)
T ss_dssp             EEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEEETT--EEEESSTTSSEEEEE-S--------EEE
T ss_pred             EEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEEcCCCcEEEeCCCCCCeeEcccC----CcceeEe
Confidence            66555444444433443333332   1234566666555 56777776665576654333343433221    1234677


Q ss_pred             eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE-EEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCce
Q 046018           98 LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL-KYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCR  175 (310)
Q Consensus        98 i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~-~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~  175 (310)
                      +...++|+++.++.                   .|.++ .+++-....+.... .......|.+.||+. ||++. ..+.
T Consensus       150 ~~r~~dG~~vavs~-------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~  208 (302)
T PF14870_consen  150 ITRSSDGRYVAVSS-------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQ  208 (302)
T ss_dssp             EEE-TTS-EEEEET-------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTE
T ss_pred             EEECCCCcEEEEEC-------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CCcE
Confidence            88889998333433                   45555 56664333554332 234467899999987 87764 4455


Q ss_pred             EEEEEccCCCCCcceeeee--CC----CC-CCeeEECCCCCEEEEEecCC
Q 046018          176 ILRFWLHGPNSGKQDVFAE--LP----GF-PDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~--~~----~~-p~~i~~d~~G~l~va~~~~~  218 (310)
                      |..=+...    ..+.+..  .+    ++ --.+++.+++.+|++...+.
T Consensus       209 ~~~s~~~~----~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~  254 (302)
T PF14870_consen  209 IQFSDDPD----DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT  254 (302)
T ss_dssp             EEEEE-TT----EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred             EEEccCCC----CccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence            55544111    1122211  11    11 12368888899999887654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.28  E-value=0.13  Score=46.85  Aligned_cols=123  Identities=15%  Similarity=0.141  Sum_probs=73.1

Q ss_pred             eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018           70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ  149 (310)
Q Consensus        70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  149 (310)
                      +++++.++++..++... .+    .-..-+++|||++|.++...               +..-.+|.+|..++....+..
T Consensus       220 i~~~~l~~g~~~~i~~~-~g----~~~~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~  279 (425)
T COG0823         220 IYYLDLNTGKRPVILNF-NG----NNGAPAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTN  279 (425)
T ss_pred             EEEEeccCCccceeecc-CC----ccCCccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceeccc
Confidence            55556665554433331 01    12345678899877777643               234469999998777555443


Q ss_pred             CCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEe
Q 046018          150 GLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       150 ~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~  215 (310)
                      .......-.++|||+.++++....  -.|++++++++..   +.+....+....-..++||...+-..
T Consensus       280 ~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         280 GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            333333567999999887765443  3788888876533   33332222233566788887666554

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.27  E-value=1  Score=42.96  Aligned_cols=113  Identities=9%  Similarity=0.030  Sum_probs=62.3

Q ss_pred             CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCc
Q 046018           95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNC  174 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~  174 (310)
                      ...-.++|+|+.+|+.......      ..+......+.++..+.+.++...  .....+..+.++|||+++.+..  .+
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g  468 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GG  468 (591)
T ss_pred             CCCceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CC
Confidence            3445788997778887533110      001111234567766666554443  2223478899999999886654  35


Q ss_pred             eEEE---EEccCCC--CCcceeeee-CCCCCCeeEECCCCCEEEEEecC
Q 046018          175 RILR---FWLHGPN--SGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       175 ~i~~---~~~~~~~--~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~  217 (310)
                      +|++   ...+++.  ++....+.. +...+..+.+-.++.|.|+....
T Consensus       469 ~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~  517 (591)
T PRK13616        469 KVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP  517 (591)
T ss_pred             EEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC
Confidence            7777   4433331  111111222 22334667777888887775543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.17  E-value=0.59  Score=39.98  Aligned_cols=71  Identities=15%  Similarity=0.261  Sum_probs=49.8

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE-EeCCCCeEEE-EecCC--cccceEEEecCCCeEEEE
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK-YEKTTKEVTI-LLQGL--AFANGVALSRDRTFILIA  169 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~~~~~~~-~~~~~--~~~~gi~~~~d~~~lyv~  169 (310)
                      .+..|+..-+|. +..|.+.                 .|++.| ||..+|+... +..+.  .....|+|+|+..+|-++
T Consensus       183 ~Iacv~Ln~~Gt-~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs  244 (346)
T KOG2111|consen  183 DIACVALNLQGT-LVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS  244 (346)
T ss_pred             ceeEEEEcCCcc-EEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE
Confidence            355677888998 7776654                 787665 7887775433 33222  234689999999966655


Q ss_pred             ecCCceEEEEEccC
Q 046018          170 ETSNCRILRFWLHG  183 (310)
Q Consensus       170 ~~~~~~i~~~~~~~  183 (310)
                       +..++|++|.+..
T Consensus       245 -SdKgTlHiF~l~~  257 (346)
T KOG2111|consen  245 -SDKGTLHIFSLRD  257 (346)
T ss_pred             -cCCCeEEEEEeec
Confidence             7889999998864

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=96.08  E-value=0.79  Score=43.22  Aligned_cols=209  Identities=14%  Similarity=0.108  Sum_probs=98.3

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      .++|.++....-|.++...+...  +... .+- ....-++....++. + ++.+   |              +.++.+|
T Consensus        71 ~~~l~~g~~D~~i~v~~~~~~~P--~~~L-kgH-~snVC~ls~~~~~~-~-iSgS---W--------------D~TakvW  127 (745)
T KOG0301|consen   71 KGRLVVGGMDTTIIVFKLSQAEP--LYTL-KGH-KSNVCSLSIGEDGT-L-ISGS---W--------------DSTAKVW  127 (745)
T ss_pred             CcceEeecccceEEEEecCCCCc--hhhh-hcc-ccceeeeecCCcCc-e-Eecc---c--------------ccceEEe
Confidence            56788887766677777765542  2211 111 11233444445554 3 3432   2              3333334


Q ss_pred             eCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018          138 EKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       138 d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~  216 (310)
                      -.  +++.....+... .-.++.-|++  .|++.+....|..|.-+.  .  ...+..-....+++++=+++.+.-+.++
T Consensus       128 ~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~--l~tf~gHtD~VRgL~vl~~~~flScsND  199 (745)
T KOG0301|consen  128 RI--GELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT--L--LKTFSGHTDCVRGLAVLDDSHFLSCSND  199 (745)
T ss_pred             cc--hhhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc--h--hhhhccchhheeeeEEecCCCeEeecCC
Confidence            32  122211222211 2355556665  688888888888885321  1  1112111123466777666666555555


Q ss_pred             CCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEc-CCCCeeccee-----EEEEeCC
Q 046018          217 KKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLED-CEGKTLSFIS-----EVEEKDG  290 (310)
Q Consensus       217 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-~~g~~~~~~~-----~~~~~~g  290 (310)
                      +.      |...+.+|+.+.+.........++. -..+...++....|+ .++.|.. .....+..++     .-+..+|
T Consensus       200 g~------Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~~Ivs~gEDr-tlriW~~~e~~q~I~lPttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  200 GS------IRLWDLDGEVLLEMHGHTNFVYSIS-MALSDGLIVSTGEDR-TLRIWKKDECVQVITLPTTSIWSAKVLLNG  271 (745)
T ss_pred             ce------EEEEeccCceeeeeeccceEEEEEE-ecCCCCeEEEecCCc-eEEEeecCceEEEEecCccceEEEEEeeCC
Confidence            54      5666667777666543322222222 111223444444333 3344431 1111112221     2223478


Q ss_pred             EEEEecCCCCeEEEec
Q 046018          291 QLWMGSVLMPFIGIYN  306 (310)
Q Consensus       291 ~l~vgs~~~~~i~~~~  306 (310)
                      .+++|+- +.+|++|-
T Consensus       272 DIvvg~S-DG~VrVfT  286 (745)
T KOG0301|consen  272 DIVVGGS-DGRVRVFT  286 (745)
T ss_pred             CEEEecc-CceEEEEE
Confidence            8888885 56666653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.07  E-value=0.73  Score=45.39  Aligned_cols=104  Identities=12%  Similarity=0.094  Sum_probs=63.3

Q ss_pred             ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-cc
Q 046018          153 FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WL  231 (310)
Q Consensus       153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~  231 (310)
                      ....++++||+. ++++-+..++|.+|+...  ......+..-.+.+-|+.+||-|+.+.+..+.+.     +.++. .+
T Consensus       131 DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-----ikvwrt~d  202 (942)
T KOG0973|consen  131 DVLDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-----LKVWRTSD  202 (942)
T ss_pred             ccceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeeecccccccceEECCccCeeeeecCCce-----EEEEEccc
Confidence            345789999988 777778889999998653  2222333333456789999999998877777665     34443 22


Q ss_pred             ccEEeeccchhhhhcccccCCCCceEEEEE--CCCCCEEEEE
Q 046018          232 GKTLLKLPLSFRQLHSLLVGGKPHATAIKL--SEKGEVLEVL  271 (310)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~g~~~~~~  271 (310)
                      -...+.+.-|.+.       ....+.+.|+  +|||+.+..-
T Consensus       203 w~i~k~It~pf~~-------~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  203 WGIEKSITKPFEE-------SPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             ceeeEeeccchhh-------CCCcceeeecccCCCcCeecch
Confidence            2233444333221       1112344454  5888877654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.06  E-value=0.81  Score=39.95  Aligned_cols=106  Identities=14%  Similarity=0.124  Sum_probs=67.0

Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEec
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAET  171 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~  171 (310)
                      ..+..|...+||. .+++.+.                .+..+..||++++...++. .+++...-+-++||+..++.+ +
T Consensus       196 ~pVtsmqwn~dgt-~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA-t  257 (445)
T KOG2139|consen  196 NPVTSMQWNEDGT-ILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA-T  257 (445)
T ss_pred             ceeeEEEEcCCCC-EEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe-c
Confidence            3456788889998 8887643                3667999999999887766 445555678899999977766 4


Q ss_pred             CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecCC
Q 046018          172 SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAKK  218 (310)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~  218 (310)
                      -+....+++..-...  .+.+.-.++.....+.+++|+ |.++.....
T Consensus       258 ~davfrlw~e~q~wt--~erw~lgsgrvqtacWspcGsfLLf~~sgsp  303 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWT--KERWILGSGRVQTACWSPCGSFLLFACSGSP  303 (445)
T ss_pred             ccceeeeehhcccce--ecceeccCCceeeeeecCCCCEEEEEEcCCc
Confidence            444433342321111  222322345556778889985 445554443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.01  E-value=0.35  Score=43.22  Aligned_cols=104  Identities=10%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE---EecC-------Cc---ccceEEEe
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI---LLQG-------LA---FANGVALS  160 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~-------~~---~~~gi~~~  160 (310)
                      .+..+++-.+.+ +..+.                  .+|.|+.|+....+..-   ++.+       ..   ..++++..
T Consensus       329 sidcv~~In~~H-fvsGS------------------dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i  389 (479)
T KOG0299|consen  329 SIDCVAFINDEH-FVSGS------------------DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI  389 (479)
T ss_pred             CeeeEEEecccc-eeecc------------------CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEec
Confidence            567777777766 44333                  37889999876543321   1111       11   34678888


Q ss_pred             cCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCC-EEEEEecCC
Q 046018          161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGE-FWVALHAKK  218 (310)
Q Consensus       161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~-l~va~~~~~  218 (310)
                      |... |+.+.+++++|..|-...+ .....++..  +.+..+.+++.++|. ||++....+
T Consensus       390 ~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEh  448 (479)
T KOG0299|consen  390 PGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEH  448 (479)
T ss_pred             ccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCCEEEEeccccc
Confidence            8766 8899899999999877643 223344444  347788999999997 777765443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.01  E-value=0.039  Score=32.06  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=29.0

Q ss_pred             cCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                      ||+++||+++...+.|.++|....   ...........|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC---eEEEEEECCCCCceEEeC
Confidence            578899999999999999997532   111111234578888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA02713 hypothetical protein; Provisional

Probab=96.01  E-value=0.5  Score=44.91  Aligned_cols=148  Identities=10%  Similarity=0.064  Sum_probs=74.5

Q ss_pred             CCcEEEEECCC------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCc---hhhhhhhhhh---
Q 046018           58 TGDLYIADAYL------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS---FQRRQFMSSI---  125 (310)
Q Consensus        58 ~g~l~v~~~~~------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~---~~~~~~~~~~---  125 (310)
                      +|+||+.....      .+.++|+.+.+.+.+...+    ......-++.-+|+ ||+......   +........+   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp----~~r~~~~~~~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP----IALSSYGMCVLDQY-IYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC----cccccccEEEECCE-EEEEeCCCccccccccccccccccc
Confidence            57999986542      2788899988765443221    11111122334677 998753210   0000000000   


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCc--ccceEEEecCCCeEEEEecCC------ceEEEEEccCCCCCcceeeeeCC-
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLA--FANGVALSRDRTFILIAETSN------CRILRFWLHGPNSGKQDVFAELP-  196 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~--~~~gi~~~~d~~~lyv~~~~~------~~i~~~~~~~~~~~~~~~~~~~~-  196 (310)
                      ........+.+|||++.+++.+.+-..  ...+++.- +++ ||+....+      ..+.+||+...  .......+++ 
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~~m~~  501 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTY--NGWELITTTES  501 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCcccccCcEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCC--CCeeEccccCc
Confidence            000013469999999998886543211  12344433 454 88874321      35788998741  1233343433 


Q ss_pred             -CCCCeeEECCCCCEEEEEe
Q 046018          197 -GFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       197 -~~p~~i~~d~~G~l~va~~  215 (310)
                       ..--++++ -+|.||+...
T Consensus       502 ~r~~~~~~~-~~~~iyv~Gg  520 (557)
T PHA02713        502 RLSALHTIL-HDNTIMMLHC  520 (557)
T ss_pred             ccccceeEE-ECCEEEEEee
Confidence             22233433 3688998643

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.99  E-value=0.89  Score=43.17  Aligned_cols=136  Identities=9%  Similarity=0.104  Sum_probs=87.2

Q ss_pred             EEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018           52 IRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT  131 (310)
Q Consensus        52 l~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (310)
                      +++++ +|...++.-...|..+|..++...  .............+++++||+..|+.+.                  ..
T Consensus        25 ~~~s~-nG~~L~t~~~d~Vi~idv~t~~~~--l~s~~~ed~d~ita~~l~~d~~~L~~a~------------------rs   83 (775)
T KOG0319|consen   25 VAWSS-NGQHLYTACGDRVIIIDVATGSIA--LPSGSNEDEDEITALALTPDEEVLVTAS------------------RS   83 (775)
T ss_pred             eeECC-CCCEEEEecCceEEEEEccCCcee--cccCCccchhhhheeeecCCccEEEEee------------------cc
Confidence            78888 888877777777888998888753  1221122234577899999998555554                  13


Q ss_pred             ceEEEEeCCCCeEEEEecC-Cccc-ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC
Q 046018          132 GRLLKYEKTTKEVTILLQG-LAFA-NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE  209 (310)
Q Consensus       132 g~v~~~d~~~~~~~~~~~~-~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  209 (310)
                      .-+-.|..+++++...... ...| -.++++|-+ .|..+....+.|-+||..++.-  ...+...||....+.+.++=+
T Consensus        84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~--th~fkG~gGvVssl~F~~~~~  160 (775)
T KOG0319|consen   84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYC--THSFKGHGGVVSSLLFHPHWN  160 (775)
T ss_pred             ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEE--EEEecCCCceEEEEEeCCccc
Confidence            4455677777755443322 2344 578999888 4777777788999999875421  122444455556677766654


Q ss_pred             EE
Q 046018          210 FW  211 (310)
Q Consensus       210 l~  211 (310)
                      .|
T Consensus       161 ~~  162 (775)
T KOG0319|consen  161 RW  162 (775)
T ss_pred             hh
Confidence            43

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.92  E-value=0.12  Score=45.87  Aligned_cols=104  Identities=19%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETS  172 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~  172 (310)
                      +...=++.++|+.|+++...               +....++.+|.++++++.+..... ...|..++++.+.+|+.. .
T Consensus        37 YF~~~~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~  100 (386)
T PF14583_consen   37 YFYQNCFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-N  100 (386)
T ss_dssp             -TTS--B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-T
T ss_pred             eecCCCcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-C
Confidence            45555678889777776642               235579999999999988765432 244788889888876552 4


Q ss_pred             CceEEEEEccCCCCCcceeeeeCC-CCC--CeeEECCCCCEEEEEec
Q 046018          173 NCRILRFWLHGPNSGKQDVFAELP-GFP--DNVRSNSNGEFWVALHA  216 (310)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~~~-~~p--~~i~~d~~G~l~va~~~  216 (310)
                      .+.|.++|+++.+   .+.+...| ...  .....++++..+++...
T Consensus       101 ~~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~  144 (386)
T PF14583_consen  101 GRSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVANSDCTKLVGIEI  144 (386)
T ss_dssp             TTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEE
T ss_pred             CCeEEEEECCcCc---EEEEEECCcccccccceeeCCCccEEEEEEE
Confidence            5799999988642   22333332 222  22345778888776543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.89  E-value=0.51  Score=44.91  Aligned_cols=170  Identities=14%  Similarity=0.138  Sum_probs=93.8

Q ss_pred             cEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc------eEEEeCCCCeEEE
Q 046018            9 GRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG------FQVVGPEGGLATQ   82 (310)
Q Consensus         9 ~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g------i~~~d~~~~~~~~   82 (310)
                      ..+.++|+..+.|+..+...                ....-.|++.-  +|.||+.....|      +-++|+++.+.+.
T Consensus       349 ~~ve~YD~~~~~W~~~a~M~----------------~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  349 SSVERYDPRTNQWTPVAPMN----------------TKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             ceEEEecCCCCceeccCCcc----------------CccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccc
Confidence            35777777777677411111                11223355544  689999876533      8889999988765


Q ss_pred             EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcc--cceEEEe
Q 046018           83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAF--ANGVALS  160 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~  160 (310)
                      .....    ...-..-++.-+|. ||+..-....           ...-..+.+|||.+++++...+-...  -.|++..
T Consensus       411 va~m~----~~r~~~gv~~~~g~-iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~  474 (571)
T KOG4441|consen  411 VAPML----TRRSGHGVAVLGGK-LYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL  474 (571)
T ss_pred             cCCCC----cceeeeEEEEECCE-EEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence            53221    11222233345676 9998642110           00235689999999998875532222  2344444


Q ss_pred             cCCCeEEEEecCC-----ceEEEEEccCCCCCcceeeeeC--CCCCCeeEECCCCCEEEEEecCC
Q 046018          161 RDRTFILIAETSN-----CRILRFWLHGPNSGKQDVFAEL--PGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       161 ~d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                       ++ .||+....+     .+|.+||+...   ....+...  +...-+++.. +|.+|+.....+
T Consensus       475 -~~-~iYvvGG~~~~~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~  533 (571)
T KOG4441|consen  475 -NG-KIYVVGGFDGTSALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDG  533 (571)
T ss_pred             -CC-EEEEECCccCCCccceEEEEcCCCC---ceeEcccCccccccccEEEE-CCEEEEEecccC
Confidence             33 488875432     34888988743   33344332  2223345553 567777654433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.89  E-value=0.58  Score=44.71  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=72.9

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      ..|.+++ ++.|.-+.+..-|..+++..... ..+...      .++.+|++.|-..+.+++.+-               
T Consensus       373 LDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn------dfVTcVaFnPvDDryFiSGSL---------------  430 (712)
T KOG0283|consen  373 LDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHN------DFVTCVAFNPVDDRYFISGSL---------------  430 (712)
T ss_pred             eeccccc-CCeeEeccccccEEeecCCCcceeeEEecC------CeeEEEEecccCCCcEeeccc---------------
Confidence            3677776 77777776665455556654433 223222      378899999866547776543               


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          129 DKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                        ++.+..|+....++.-..+.......+++.|||+..+|. +.++....|+..+-
T Consensus       431 --D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIG-t~~G~C~fY~t~~l  483 (712)
T KOG0283|consen  431 --DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIG-TFNGYCRFYDTEGL  483 (712)
T ss_pred             --ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEE-EeccEEEEEEccCC
Confidence              888888987655554433333447889999999966654 78888888887653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.88  E-value=0.33  Score=46.13  Aligned_cols=149  Identities=10%  Similarity=0.032  Sum_probs=89.0

Q ss_pred             ccccceeceEEEeCCCCcEEEEECCCc---eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAYLG---FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      .........+.++| +|++.++..-+.   |+.+|  +-++  +...+ +-.+ -..+|-+++|++ +.+|.+.      
T Consensus       505 Lel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflD--tlKF--flsLY-GHkL-PV~smDIS~DSk-livTgSA------  570 (888)
T KOG0306|consen  505 LELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLD--TLKF--FLSLY-GHKL-PVLSMDISPDSK-LIVTGSA------  570 (888)
T ss_pred             EeccccEEEEEEcC-CCcEEEEEeccCeEEEEEec--ceee--eeeec-cccc-ceeEEeccCCcC-eEEeccC------
Confidence            33345566788999 888777766543   55544  3332  22222 1111 135678889999 8888754      


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                                 +.+|-.|-.+-|.+..-. ......-.+.|-|+.. ++++....+.|-.||-+  +....+.+..-...
T Consensus       571 -----------DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~--kFe~iq~L~~H~~e  636 (888)
T KOG0306|consen  571 -----------DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGE--KFEEIQKLDGHHSE  636 (888)
T ss_pred             -----------CCceEEeccccchhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechh--hhhhheeeccchhe
Confidence                       455667766667665422 1112235677888654 78887888899998743  22222222111123


Q ss_pred             CCeeEECCCCCEEEEEecCCc
Q 046018          199 PDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ...+++.++|.+.|+......
T Consensus       637 v~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  637 VWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             eeeeEEcCCCCeEEeccCCce
Confidence            567899999998888766554

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=95.88  E-value=0.12  Score=47.73  Aligned_cols=68  Identities=21%  Similarity=0.325  Sum_probs=46.8

Q ss_pred             CcccceEEEecCCCeEEEEecCCc----------------eEEEEEccCC----CCCcceeeeeC--C------------
Q 046018          151 LAFANGVALSRDRTFILIAETSNC----------------RILRFWLHGP----NSGKQDVFAEL--P------------  196 (310)
Q Consensus       151 ~~~~~gi~~~~d~~~lyv~~~~~~----------------~i~~~~~~~~----~~~~~~~~~~~--~------------  196 (310)
                      ...|.+|++.|..+.+|++.+.+.                .|++|-+.+.    .....++|...  +            
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~  495 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN  495 (616)
T ss_pred             ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence            345889999998777999887654                6788866532    11123333321  1            


Q ss_pred             ----CCCCeeEECCCCCEEEEEecCC
Q 046018          197 ----GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       197 ----~~p~~i~~d~~G~l~va~~~~~  218 (310)
                          ..||++++|+.|+|||++-...
T Consensus       496 ~~~f~~PDnl~fD~~GrLWi~TDg~~  521 (616)
T COG3211         496 ANWFNSPDNLAFDPWGRLWIQTDGSG  521 (616)
T ss_pred             cccccCCCceEECCCCCEEEEecCCC
Confidence                2399999999999999976554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.83  E-value=1.4  Score=39.87  Aligned_cols=164  Identities=9%  Similarity=0.018  Sum_probs=95.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCCce-EEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGF-QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi-~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ...+-..+.++++.+++....+++ ..+|.+++.. ++ .. .+ ...+.+..++.|....++++.+.            
T Consensus       111 apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~-~l-~~-htDYVR~g~~~~~~~hivvtGsY------------  174 (487)
T KOG0310|consen  111 APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QA-EL-SG-HTDYVRCGDISPANDHIVVTGSY------------  174 (487)
T ss_pred             CceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EE-Ee-cC-CcceeEeeccccCCCeEEEecCC------------
Confidence            344556678877788877776664 4558887764 22 22 11 22377888888765558888754            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeeeCCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~p~~i~  203 (310)
                           +|.|-.||........+. +.......+.+-|.|. ++++ .+.+.|.+||+-++ +..  ....+-......++
T Consensus       175 -----Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~ias-AgGn~vkVWDl~~G~qll--~~~~~H~KtVTcL~  245 (487)
T KOG0310|consen  175 -----DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIAS-AGGNSVKVWDLTTGGQLL--TSMFNHNKTVTCLR  245 (487)
T ss_pred             -----CceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEE-cCCCeEEEEEecCCceeh--hhhhcccceEEEEE
Confidence                 888999997554322222 2222335566667776 6655 56689999998732 110  00111111235677


Q ss_pred             ECCCC-CEEEEEecCCccceeeeeecc-ccccEEeeccch
Q 046018          204 SNSNG-EFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLS  241 (310)
Q Consensus       204 ~d~~G-~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~  241 (310)
                      +..++ +|+-+..+++      +..|+ .+-+.+.....|
T Consensus       246 l~s~~~rLlS~sLD~~------VKVfd~t~~Kvv~s~~~~  279 (487)
T KOG0310|consen  246 LASDSTRLLSGSLDRH------VKVFDTTNYKVVHSWKYP  279 (487)
T ss_pred             eecCCceEeecccccc------eEEEEccceEEEEeeecc
Confidence            77776 5666666666      55565 344455555444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.81  E-value=0.45  Score=44.80  Aligned_cols=125  Identities=11%  Similarity=0.083  Sum_probs=78.5

Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE-EEEecCCcccceEEEecCCCeEEEEe
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV-TILLQGLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~~~gi~~~~d~~~lyv~~  170 (310)
                      .+.++++++.|||..+.++.                   ..+++.||+.+|.. +++.......+.++++.||+ ++.+.
T Consensus        12 ~hci~d~afkPDGsqL~lAA-------------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG   71 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAA-------------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASG   71 (1081)
T ss_pred             ccchheeEECCCCceEEEec-------------------CCEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccC
Confidence            34789999999999777775                   66899999987754 33332233468999999998 77776


Q ss_pred             cCCceEEEEEccC-CCC--Cc-----------------------ceeeeeCC---------CCCCeeEECCCCCEEEEEe
Q 046018          171 TSNCRILRFWLHG-PNS--GK-----------------------QDVFAELP---------GFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       171 ~~~~~i~~~~~~~-~~~--~~-----------------------~~~~~~~~---------~~p~~i~~d~~G~l~va~~  215 (310)
                      ..+..|-+|++.- +.+  ++                       ...+....         ..-.+-....||.+++-..
T Consensus        72 ~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   72 SADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             CCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec
Confidence            6666666666541 100  00                       00010000         0112346678998777666


Q ss_pred             cCCccceeeeeeccccccEEeeccch
Q 046018          216 AKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       216 ~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      .++.     |..-++.|+....+..|
T Consensus       152 ~nGT-----IsiRNk~gEek~~I~Rp  172 (1081)
T KOG1538|consen  152 FNGT-----ISIRNKNGEEKVKIERP  172 (1081)
T ss_pred             cCce-----EEeecCCCCcceEEeCC
Confidence            6665     55567788776666554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.81  E-value=0.94  Score=37.88  Aligned_cols=132  Identities=11%  Similarity=0.017  Sum_probs=70.3

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      +-.++++.+.+.+..+|+.++.+. . ...-+..+. ...+.   =|+++.++=                  ..|.+|.+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~-W-e~ilg~RiE-~sa~v---vgdfVV~GC------------------y~g~lYfl   78 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLI-W-EAILGVRIE-CSAIV---VGDFVVLGC------------------YSGGLYFL   78 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEE-e-ehhhCceee-eeeEE---ECCEEEEEE------------------ccCcEEEE
Confidence            335677766666788899998763 2 211111111 11122   133244433                  36778888


Q ss_pred             eCCCCe-EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCC-CCCeeEECC-CCCEEEE
Q 046018          138 EKTTKE-VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPG-FPDNVRSNS-NGEFWVA  213 (310)
Q Consensus       138 d~~~~~-~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~p~~i~~d~-~G~l~va  213 (310)
                      +.++|. ...+.....--..-..++++..+|. .+.++..|.+|+...    .-++.. -+| .--+-++++ +|.||+|
T Consensus        79 ~~~tGs~~w~f~~~~~vk~~a~~d~~~glIyc-gshd~~~yalD~~~~----~cVykskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen   79 CVKTGSQIWNFVILETVKVRAQCDFDGGLIYC-GSHDGNFYALDPKTY----GCVYKSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             EecchhheeeeeehhhhccceEEcCCCceEEE-ecCCCcEEEeccccc----ceEEecccCCceeccceecCCCceEEEE
Confidence            888773 2222111111122346788884554 477889999987642    112222 121 112335566 7889999


Q ss_pred             EecCC
Q 046018          214 LHAKK  218 (310)
Q Consensus       214 ~~~~~  218 (310)
                      ...+.
T Consensus       154 ~t~G~  158 (354)
T KOG4649|consen  154 ITAGA  158 (354)
T ss_pred             eccce
Confidence            88876

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.80  E-value=0.54  Score=46.27  Aligned_cols=103  Identities=12%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETS  172 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~  172 (310)
                      .+.+++.+|++. +.++-+.                 ++.|..||..+.+..... .....+.|++|+|-|+ -+.+.+.
T Consensus       131 DV~Dv~Wsp~~~-~lvS~s~-----------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsd  191 (942)
T KOG0973|consen  131 DVLDVNWSPDDS-LLVSVSL-----------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSD  191 (942)
T ss_pred             ccceeccCCCcc-EEEEecc-----------------cceEEEEccccceeeeeeecccccccceEECCccC-eeeeecC
Confidence            467888999998 7777643                 788999998776443333 3345689999999998 3456677


Q ss_pred             CceEEEEEccCCCCCc--ceeeeeCCCCC--CeeEECCCCCEEEEEe
Q 046018          173 NCRILRFWLHGPNSGK--QDVFAELPGFP--DNVRSNSNGEFWVALH  215 (310)
Q Consensus       173 ~~~i~~~~~~~~~~~~--~~~~~~~~~~p--~~i~~d~~G~l~va~~  215 (310)
                      ++.|-+|+...=...+  .+.+...++.+  ..+..+|||...++.+
T Consensus       192 Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  192 DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            7888888754200000  01122222222  3466789998777644

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.73  E-value=2  Score=41.12  Aligned_cols=146  Identities=14%  Similarity=0.153  Sum_probs=78.7

Q ss_pred             cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ++...+..+-|.+..+.++...+.+..+|.....+--....    --..++.|+..||+. =+++.+.            
T Consensus       412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A----HdgaIWsi~~~pD~~-g~vT~sa------------  474 (888)
T KOG0306|consen  412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRA----HDGAIWSISLSPDNK-GFVTGSA------------  474 (888)
T ss_pred             cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhc----cccceeeeeecCCCC-ceEEecC------------
Confidence            34555666666333333443333366666654432111111    112578899999998 6666543            


Q ss_pred             hcCCCCceEEEEeCC-----CCeEEE-E-------ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee
Q 046018          126 LSGDKTGRLLKYEKT-----TKEVTI-L-------LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF  192 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~-----~~~~~~-~-------~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~  192 (310)
                           +..|..||..     .+.... +       .+-....-.+.++||+++|.|+ --++++.+|-+++-     ..+
T Consensus       475 -----DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDtl-----KFf  543 (888)
T KOG0306|consen  475 -----DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDTL-----KFF  543 (888)
T ss_pred             -----CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE-eccCeEEEEEecce-----eee
Confidence                 4445554421     011101 1       1111224578999999977666 55678888877742     223


Q ss_pred             eeCCC--CC-CeeEECCCCCEEEEEecCCc
Q 046018          193 AELPG--FP-DNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       193 ~~~~~--~p-~~i~~d~~G~l~va~~~~~~  219 (310)
                      ..+-|  .| -.|-+++|+.+.++......
T Consensus       544 lsLYGHkLPV~smDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISPDSKLIVTGSADKN  573 (888)
T ss_pred             eeecccccceeEEeccCCcCeEEeccCCCc
Confidence            33221  23 56777888888887665543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=95.69  E-value=1.1  Score=37.67  Aligned_cols=149  Identities=10%  Similarity=0.088  Sum_probs=90.9

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCC-C--eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEG-G--LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~-~--~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ++...++++|..|.++....... |..++..+ .  ..+.+.+   +.-...++.+|..|.|+ +.++.+-         
T Consensus        15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld---~~hkrsVRsvAwsp~g~-~La~aSF---------   81 (312)
T KOG0645|consen   15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD---DGHKRSVRSVAWSPHGR-YLASASF---------   81 (312)
T ss_pred             CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc---ccchheeeeeeecCCCc-EEEEeec---------
Confidence            46778999984477776666544 55555542 1  2222222   12224688999999999 5555432         


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEec--CC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC--
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQ--GL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG--  197 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--  197 (310)
                              +..+..|-...++++.+..  +. ....+++++++|++ +.+-+....||++..++.  .+.+..+-+..  
T Consensus        82 --------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~ded--dEfec~aVL~~Ht  150 (312)
T KOG0645|consen   82 --------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDED--DEFECIAVLQEHT  150 (312)
T ss_pred             --------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCC--CcEEEEeeecccc
Confidence                    6677777776677776442  22 23568999999994 445577899999988743  23343333221  


Q ss_pred             -CCCeeEECCCCCEEEEEecCCc
Q 046018          198 -FPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       198 -~p~~i~~d~~G~l~va~~~~~~  219 (310)
                       -.-.+..-|.-.|.++....+.
T Consensus       151 qDVK~V~WHPt~dlL~S~SYDnT  173 (312)
T KOG0645|consen  151 QDVKHVIWHPTEDLLFSCSYDNT  173 (312)
T ss_pred             ccccEEEEcCCcceeEEeccCCe
Confidence             1245667776566666555554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.62  E-value=0.7  Score=43.27  Aligned_cols=182  Identities=13%  Similarity=0.133  Sum_probs=98.7

Q ss_pred             ccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEE
Q 046018            4 TGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQ   82 (310)
Q Consensus         4 ~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~   82 (310)
                      ++.-++.|..||....     ....+...|..+.+ ............+|..+ .|.++|+....+ |..+|+++.+-  
T Consensus       135 SgGLD~~IflWDin~~-----~~~l~~s~n~~t~~-sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~k--  205 (735)
T KOG0308|consen  135 SGGLDRKIFLWDINTG-----TATLVASFNNVTVN-SLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKK--  205 (735)
T ss_pred             ecCCCccEEEEEccCc-----chhhhhhccccccc-cCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccc--
Confidence            3556778888988653     12233334332211 00001112344677766 787888766554 77779998752  


Q ss_pred             EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEec
Q 046018           83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSR  161 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~  161 (310)
                      +.+. .+ -...+..+.+++||+++.-+. .                 +|.|-.||..-.++.. +.......-.+..+|
T Consensus       206 imkL-rG-HTdNVr~ll~~dDGt~~ls~s-S-----------------DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~  265 (735)
T KOG0308|consen  206 IMKL-RG-HTDNVRVLLVNDDGTRLLSAS-S-----------------DGTIRLWDLGQQRCLATYIVHKEGVWALQSSP  265 (735)
T ss_pred             eeee-ec-cccceEEEEEcCCCCeEeecC-C-----------------CceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence            2221 11 112577899999999565444 2                 7888888874333221 111111234556667


Q ss_pred             CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEEC-CCCCEEEEEecCC
Q 046018          162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRSN-SNGEFWVALHAKK  218 (310)
Q Consensus       162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d-~~G~l~va~~~~~  218 (310)
                      +-..+|..+ ..+.|++=|+...  .+...+... ..| ..+... .+..+|++++.+.
T Consensus       266 sf~~vYsG~-rd~~i~~Tdl~n~--~~~tlick~-daPv~~l~~~~~~~~~WvtTtds~  320 (735)
T KOG0308|consen  266 SFTHVYSGG-RDGNIYRTDLRNP--AKSTLICKE-DAPVLKLHLHEHDNSVWVTTTDSS  320 (735)
T ss_pred             CcceEEecC-CCCcEEecccCCc--hhheEeecC-CCchhhhhhccccCCceeeecccc
Confidence            777677664 5678888887643  122222221 112 223333 2344799998876

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=95.60  E-value=1.7  Score=39.28  Aligned_cols=82  Identities=10%  Similarity=0.011  Sum_probs=55.4

Q ss_pred             CceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--CCCCCeeEECCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--PGFPDNVRSNSN  207 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~  207 (310)
                      ++.|..||.+.+.......+.. ....++++|++++| .+.+..++|..++....     ..+...  .+....+++..+
T Consensus       431 dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl-AsGs~dg~V~iws~~~~-----~l~~s~~~~~~Ifel~Wn~~  504 (524)
T KOG0273|consen  431 DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL-ASGSLDGCVHIWSTKTG-----KLVKSYQGTGGIFELCWNAA  504 (524)
T ss_pred             CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE-EecCCCCeeEeccccch-----heeEeecCCCeEEEEEEcCC
Confidence            7789999998776544333333 34789999999844 45567789999986532     233332  233466888999


Q ss_pred             CCEEEEEecCC
Q 046018          208 GEFWVALHAKK  218 (310)
Q Consensus       208 G~l~va~~~~~  218 (310)
                      |+...+....+
T Consensus       505 G~kl~~~~sd~  515 (524)
T KOG0273|consen  505 GDKLGACASDG  515 (524)
T ss_pred             CCEEEEEecCC
Confidence            98877776655

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=95.59  E-value=1  Score=36.72  Aligned_cols=66  Identities=9%  Similarity=-0.047  Sum_probs=37.5

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEE-------eCCCCeEEEEE----eecCCc-cccCCcceEEeCCCCEEEEEeCCC
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVV-------GPEGGLATQLV----TEAAGQ-PLRFTNDLDIDEHKGVIYFTDSST  114 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-------d~~~~~~~~~~----~~~~~~-~~~~~~~i~~d~~g~~l~v~~~~~  114 (310)
                      .....+++.| .|.||.+......+|+       +++.+......    ..-... -...+...+.+|.|. |..+.+..
T Consensus        33 qairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsnd  110 (350)
T KOG0641|consen   33 QAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSND  110 (350)
T ss_pred             hheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCC
Confidence            4566899999 9999999887655544       33222110000    000000 112466778888998 77776553

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=1.4  Score=37.68  Aligned_cols=133  Identities=13%  Similarity=0.132  Sum_probs=76.9

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      +..+|+++...|+..+|..+-.-.+...... . ..+..++.+  .|+++|+++.                  +..++.+
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t-~gyaygv~v--sGn~aYVadl------------------ddgfLiv  153 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-T-DGYAYGVYV--SGNYAYVADL------------------DDGFLIV  153 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceecccc-C-CceEEEEEe--cCCEEEEeec------------------cCcEEEE
Confidence            5689999988898888876543222211110 0 023344444  5778999983                  3457778


Q ss_pred             eCCCCeEEEEecCCccc----ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCCEE
Q 046018          138 EKTTKEVTILLQGLAFA----NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFW  211 (310)
Q Consensus       138 d~~~~~~~~~~~~~~~~----~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~  211 (310)
                      |..+-+-..+......|    ..++++  |++.|++ ..++.+.+.|....  .+......  ..+...++.+. +.+.|
T Consensus       154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA-~~d~GL~ivDVSnp--~sPvli~~~n~g~g~~sv~vs-dnr~y  227 (370)
T COG5276         154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVA-WRDGGLTIVDVSNP--HSPVLIGSYNTGPGTYSVSVS-DNRAY  227 (370)
T ss_pred             ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEE-EeCCCeEEEEccCC--CCCeEEEEEecCCceEEEEec-CCeeE
Confidence            76654333333333223    456666  5678998 56688999998743  22222222  22234555553 46688


Q ss_pred             EEEecCC
Q 046018          212 VALHAKK  218 (310)
Q Consensus       212 va~~~~~  218 (310)
                      ++....+
T Consensus       228 ~vvy~eg  234 (370)
T COG5276         228 LVVYDEG  234 (370)
T ss_pred             EEEcccc
Confidence            8887766

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.52  E-value=2.3  Score=40.22  Aligned_cols=82  Identities=15%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             CCceEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCC--CCCeeEEC
Q 046018          130 KTGRLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPG--FPDNVRSN  205 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~--~p~~i~~d  205 (310)
                      ..|.|..+|+.+|+..-....... ..+. +.-.+. |++..+.++.++.||.++++.    ++.. +++  ...=|.+.
T Consensus       439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~-lvf~g~~~G~l~a~D~~TGe~----lw~~~~g~~~~a~P~ty~  512 (527)
T TIGR03075       439 HMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGD-LVFYGTLEGYFKAFDAKTGEE----LWKFKTGSGIVGPPVTYE  512 (527)
T ss_pred             CceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCc-EEEEECCCCeEEEEECCCCCE----eEEEeCCCCceecCEEEE
Confidence            367899999999977653322111 1232 223445 444456778999999875422    2221 221  11224444


Q ss_pred             CCCCEEEEEecC
Q 046018          206 SNGEFWVALHAK  217 (310)
Q Consensus       206 ~~G~l~va~~~~  217 (310)
                      .+|++||+...+
T Consensus       513 ~~G~qYv~~~~G  524 (527)
T TIGR03075       513 QDGKQYVAVLSG  524 (527)
T ss_pred             eCCEEEEEEEec
Confidence            579999886543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.50  E-value=0.59  Score=41.91  Aligned_cols=107  Identities=13%  Similarity=0.176  Sum_probs=63.6

Q ss_pred             EeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018           54 FDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR  133 (310)
Q Consensus        54 ~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~  133 (310)
                      ... +|++|+......|+.+|++++... ....... .....+.-....+|+ +|+++.                  .+.
T Consensus        65 ~~~-dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~-~~~~~~~~~~~~~G~-i~~g~~------------------~g~  122 (370)
T COG1520          65 ADG-DGTVYVGTRDGNIFALNPDTGLVK-WSYPLLG-AVAQLSGPILGSDGK-IYVGSW------------------DGK  122 (370)
T ss_pred             Eee-CCeEEEecCCCcEEEEeCCCCcEE-ecccCcC-cceeccCceEEeCCe-EEEecc------------------cce
Confidence            555 889999966656999999998742 2111111 011233333444898 999983                  557


Q ss_pred             EEEEeCCCCeEEEEecCCc--ccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          134 LLKYEKTTKEVTILLQGLA--FANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       134 v~~~d~~~~~~~~~~~~~~--~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ++.+|..+|+.........  .-.+-++-.|+. +|+.. .++.++.++.+.+
T Consensus       123 ~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~-v~~~s-~~g~~~al~~~tG  173 (370)
T COG1520         123 LYALDASTGTLVWSRNVGGSPYYASPPVVGDGT-VYVGT-DDGHLYALNADTG  173 (370)
T ss_pred             EEEEECCCCcEEEEEecCCCeEEecCcEEcCcE-EEEec-CCCeEEEEEccCC
Confidence            9999997777665433222  011122333554 66653 6688888887743

>KOG4328 consensus WD40 protein [Function unknown]

Probab=95.49  E-value=1.8  Score=38.92  Aligned_cols=149  Identities=15%  Similarity=0.196  Sum_probs=76.8

Q ss_pred             eceEEEeCCC-CcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKT-GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~-g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ..+|.+.+-+ ..+|.+...+-|...|.+++....+......  .....++.+..+...+++++.               
T Consensus       237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~---------------  299 (498)
T KOG4328|consen  237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDN---------------  299 (498)
T ss_pred             ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcc--ceeeeeccccCCCccEEEeec---------------
Confidence            4578887622 2566665544366668777655433322100  011223334333332555542               


Q ss_pred             CCCCceEEEEeCCCCe--EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce-eeeeCC--CCCCee
Q 046018          128 GDKTGRLLKYEKTTKE--VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD-VFAELP--GFPDNV  202 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~--~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~-~~~~~~--~~p~~i  202 (310)
                         -|..-.||..++.  ...+.-......++++.|-..+++++.+..+.+-+||+..-. ++.. .+..++  ......
T Consensus       300 ---~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-~K~sp~lst~~HrrsV~sA  375 (498)
T KOG4328|consen  300 ---VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR-GKASPFLSTLPHRRSVNSA  375 (498)
T ss_pred             ---ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc-CCCCcceecccccceeeee
Confidence               3344455543332  222211123578999999877777877777888899986311 1111 233332  234678


Q ss_pred             EECCCC-CEEEEEecCC
Q 046018          203 RSNSNG-EFWVALHAKK  218 (310)
Q Consensus       203 ~~d~~G-~l~va~~~~~  218 (310)
                      +++|.| +|...+..+.
T Consensus       376 yFSPs~gtl~TT~~D~~  392 (498)
T KOG4328|consen  376 YFSPSGGTLLTTCQDNE  392 (498)
T ss_pred             EEcCCCCceEeeccCCc
Confidence            888886 5444444433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.44  E-value=1.1  Score=39.18  Aligned_cols=145  Identities=12%  Similarity=0.143  Sum_probs=79.0

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcc-eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTND-LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~-i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      .+.+..  .+|.|.-... |+..|.++.++-+.+...   +- .+.+ +|.+++..--|++-..              ..
T Consensus        92 ~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~---~~-n~~gl~AlS~n~~n~ylAyp~--------------s~  150 (391)
T KOG2110|consen   92 AVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETT---PP-NPKGLCALSPNNANCYLAYPG--------------ST  150 (391)
T ss_pred             EEEEcc--ceEEEEEccc-EEEEecccceeehhhhcc---CC-CccceEeeccCCCCceEEecC--------------CC
Confidence            444443  5676664443 888898887654332221   11 2332 3344332114544322              12


Q ss_pred             CCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCce-EEEEEccCCCCCcceeeee--CCCCCCeeEEC
Q 046018          130 KTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCR-ILRFWLHGPNSGKQDVFAE--LPGFPDNVRSN  205 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~-i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d  205 (310)
                      ..|.|+.||..+-+.....+... .-..++|++||. ++.+.+..++ |.+|....++  ....|..  .+-....++|+
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~--kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQ--KLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCcc--EeeeeeCCceeeEEEEEEEC
Confidence            37889999987644433333333 347899999998 6666666665 4455544221  1122221  12234678999


Q ss_pred             CCCCEEEEEecCCc
Q 046018          206 SNGEFWVALHAKKG  219 (310)
Q Consensus       206 ~~G~l~va~~~~~~  219 (310)
                      +++.+..+..+...
T Consensus       228 ~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  228 PDSQFLAASSNTET  241 (391)
T ss_pred             CCCCeEEEecCCCe
Confidence            99997777666554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.38  E-value=1.9  Score=38.60  Aligned_cols=103  Identities=11%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      +|+||+++....++.+|.+++... ......+ . .....-++-.++. +|+.+                  .++.++.+
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~-W~~~~~~-~-~~~~~~~v~~~~~-v~~~s------------------~~g~~~al  168 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLV-WSRNVGG-S-PYYASPPVVGDGT-VYVGT------------------DDGHLYAL  168 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEE-EEEecCC-C-eEEecCcEEcCcE-EEEec------------------CCCeEEEE
Confidence            688999988766999999767643 2222112 0 0111223445676 88874                  16789999


Q ss_pred             eCCCCeEEEEecC-----CcccceEEEecCCCeEEEEecC-CceEEEEEccCC
Q 046018          138 EKTTKEVTILLQG-----LAFANGVALSRDRTFILIAETS-NCRILRFWLHGP  184 (310)
Q Consensus       138 d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~~-~~~i~~~~~~~~  184 (310)
                      |.++|+.......     .......+ ..++. +|+.... +..++.+++..+
T Consensus       169 ~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~-vy~~~~~~~~~~~a~~~~~G  219 (370)
T COG1520         169 NADTGTLKWTYETPAPLSLSIYGSPA-IASGT-VYVGSDGYDGILYALNAEDG  219 (370)
T ss_pred             EccCCcEEEEEecCCccccccccCce-eecce-EEEecCCCcceEEEEEccCC
Confidence            9988866432111     11112222 33454 7887443 457999998543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=95.38  E-value=0.99  Score=42.59  Aligned_cols=138  Identities=9%  Similarity=0.073  Sum_probs=79.2

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      ...++.-+ ++ .|++...+...++-..+..++.+ .   + -....+++++-+++. +.-+.                 
T Consensus       143 VWAv~~l~-e~-~~vTgsaDKtIklWk~~~~l~tf-~---g-HtD~VRgL~vl~~~~-flScs-----------------  197 (745)
T KOG0301|consen  143 VWAVASLP-EN-TYVTGSADKTIKLWKGGTLLKTF-S---G-HTDCVRGLAVLDDSH-FLSCS-----------------  197 (745)
T ss_pred             eeeeeecC-CC-cEEeccCcceeeeccCCchhhhh-c---c-chhheeeeEEecCCC-eEeec-----------------
Confidence            34566656 54 67776665544443333333322 1   1 223688999999988 44333                 


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC-CCCeeEECCC
Q 046018          129 DKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG-FPDNVRSNSN  207 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~  207 (310)
                       .+|-|.+|+.+++........-..-..|....+++ ++++...++.+..|+.+     .......+|. ......+=++
T Consensus       198 -NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~N  270 (745)
T KOG0301|consen  198 -NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLN  270 (745)
T ss_pred             -CCceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeC
Confidence             27889999986554444333233345666555655 77776666777777643     2222223443 3345555567


Q ss_pred             CCEEEEEecCC
Q 046018          208 GEFWVALHAKK  218 (310)
Q Consensus       208 G~l~va~~~~~  218 (310)
                      |.|+++..++.
T Consensus       271 gDIvvg~SDG~  281 (745)
T KOG0301|consen  271 GDIVVGGSDGR  281 (745)
T ss_pred             CCEEEeccCce
Confidence            77877777665

>PRK13684 Ycf48-like protein; Provisional

Probab=95.37  E-value=1.8  Score=38.23  Aligned_cols=99  Identities=12%  Similarity=0.062  Sum_probs=51.3

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE-eCCCCeEEEEecC-CcccceEEEecCCCeEEEEec
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY-EKTTKEVTILLQG-LAFANGVALSRDRTFILIAET  171 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~  171 (310)
                      ..+++++++++. +++..                  ..|.+++- +.....++.+... ....+++++.++++ +|++..
T Consensus       174 ~~~~i~~~~~g~-~v~~g------------------~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~  233 (334)
T PRK13684        174 VVRNLRRSPDGK-YVAVS------------------SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR  233 (334)
T ss_pred             eEEEEEECCCCe-EEEEe------------------CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec
Confidence            456777778776 44443                  14556654 2222245544322 23457888888887 666533


Q ss_pred             CCceEEEE-EccCCCCCcceeeeeCC-----CCCCeeEECCCCCEEEEEecC
Q 046018          172 SNCRILRF-WLHGPNSGKQDVFAELP-----GFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       172 ~~~~i~~~-~~~~~~~~~~~~~~~~~-----~~p~~i~~d~~G~l~va~~~~  217 (310)
                      . + ..++ ..+++..  .+.. ..|     .....+++.+++.+|++...+
T Consensus       234 ~-G-~~~~~s~d~G~s--W~~~-~~~~~~~~~~l~~v~~~~~~~~~~~G~~G  280 (334)
T PRK13684        234 G-G-QIRFNDPDDLES--WSKP-IIPEITNGYGYLDLAYRTPGEIWAGGGNG  280 (334)
T ss_pred             C-C-EEEEccCCCCCc--cccc-cCCccccccceeeEEEcCCCCEEEEcCCC
Confidence            2 3 3344 2343311  1111 011     112456777788888876554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=95.36  E-value=0.26  Score=43.75  Aligned_cols=114  Identities=11%  Similarity=0.037  Sum_probs=72.1

Q ss_pred             eeceEEEeCCCCcEEEEECCCc-eEEEeCCCC--eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGG--LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....+++.+....||.+...++ +..+|.++.  +..+....    -....+.+++.|-+..+..+.+            
T Consensus       229 ~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a----h~~~vn~~~fnp~~~~ilAT~S------------  292 (422)
T KOG0264|consen  229 VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA----HSAEVNCVAFNPFNEFILATGS------------  292 (422)
T ss_pred             ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc----cCCceeEEEeCCCCCceEEecc------------
Confidence            3446666665556776666554 667787742  22222111    1234788999998874555543            


Q ss_pred             hhcCCCCceEEEEeCCCCeE--EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          125 ILSGDKTGRLLKYEKTTKEV--TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                           .+++|..||+..=..  ..+..-......+.|+|+...++.+....+++.+||..
T Consensus       293 -----~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  293 -----ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             -----CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence                 378899999753111  11111122346899999998899888888999999986

>PHA02790 Kelch-like protein; Provisional

Probab=95.34  E-value=1.8  Score=40.42  Aligned_cols=130  Identities=6%  Similarity=-0.037  Sum_probs=71.4

Q ss_pred             CCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceE
Q 046018           58 TGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRL  134 (310)
Q Consensus        58 ~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v  134 (310)
                      +|.||+....   ..+.++|+.+++...+...    +.......++.-+|+ ||+.....              .....+
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l----~~~r~~~~~~~~~g~-IYviGG~~--------------~~~~~v  378 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL----LKPRCNPAVASINNV-IYVIGGHS--------------ETDTTT  378 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCC----CCCCcccEEEEECCE-EEEecCcC--------------CCCccE
Confidence            6799998654   2378888887765543221    111222333445677 99875321              012357


Q ss_pred             EEEeCCCCeEEEEecCCccc--ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--CCCCeeEECCCCCE
Q 046018          135 LKYEKTTKEVTILLQGLAFA--NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP--GFPDNVRSNSNGEF  210 (310)
Q Consensus       135 ~~~d~~~~~~~~~~~~~~~~--~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~l  210 (310)
                      .+|||++.+++.... ...|  ..-+..-+++ ||+..   +.+.+||++..   ......+++  ..-.++++ -+|.|
T Consensus       379 e~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~-IYv~G---G~~e~ydp~~~---~W~~~~~m~~~r~~~~~~v-~~~~I  449 (480)
T PHA02790        379 EYLLPNHDQWQFGPS-TYYPHYKSCALVFGRR-LFLVG---RNAEFYCESSN---TWTLIDDPIYPRDNPELII-VDNKL  449 (480)
T ss_pred             EEEeCCCCEEEeCCC-CCCccccceEEEECCE-EEEEC---CceEEecCCCC---cEeEcCCCCCCccccEEEE-ECCEE
Confidence            889999888886532 2222  2222233554 99874   45778887632   333333322  22233444 35788


Q ss_pred             EEEEe
Q 046018          211 WVALH  215 (310)
Q Consensus       211 ~va~~  215 (310)
                      |+...
T Consensus       450 YviGG  454 (480)
T PHA02790        450 LLIGG  454 (480)
T ss_pred             EEECC
Confidence            88653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=95.32  E-value=1.9  Score=38.14  Aligned_cols=84  Identities=12%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             CCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC
Q 046018          130 KTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE  209 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  209 (310)
                      .+..|..||..+|+...-..-......+.|+.||. ++++.....+|.++|+..+..-. +........|....+-.+|.
T Consensus       152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~-e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVS-EGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             CCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEee-ecccccCCCcceeEEeccCc
Confidence            36789999999887665433223346788999998 77777889999999987542110 00111112344455556777


Q ss_pred             EEEEEe
Q 046018          210 FWVALH  215 (310)
Q Consensus       210 l~va~~  215 (310)
                      |..+.+
T Consensus       230 i~tTGf  235 (472)
T KOG0303|consen  230 IFTTGF  235 (472)
T ss_pred             eeeecc
Confidence            655443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.26  E-value=1.5  Score=36.70  Aligned_cols=70  Identities=17%  Similarity=0.094  Sum_probs=45.4

Q ss_pred             EeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCc
Q 046018           54 FDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTG  132 (310)
Q Consensus        54 ~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g  132 (310)
                      .|.+.|-+|.+.+.+..+.+|+.+.....-.+. .+.   ...+-++++ ++. ||++.                  ..|
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc-gG~---~f~sP~i~~g~~s-ly~a~------------------t~G  157 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGG---TFVSPVIAPGDGS-LYAAI------------------TAG  157 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEeccc-CCc---eeccceecCCCce-EEEEe------------------ccc
Confidence            455467889998887899999987654322222 111   122335566 777 99998                  367


Q ss_pred             eEEEEeCCCCeEEE
Q 046018          133 RLLKYEKTTKEVTI  146 (310)
Q Consensus       133 ~v~~~d~~~~~~~~  146 (310)
                      .|++.++.+.....
T Consensus       158 ~vlavt~~~~~~~~  171 (354)
T KOG4649|consen  158 AVLAVTKNPYSSTE  171 (354)
T ss_pred             eEEEEccCCCCcce
Confidence            89999887765444

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.21  E-value=3  Score=39.80  Aligned_cols=144  Identities=14%  Similarity=0.072  Sum_probs=80.5

Q ss_pred             eceEEEeCCCCcEEEEECCC-c------eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAYL-G------FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~-g------i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      ..++++-  +|.||++.... |      +.++|+.+++.+.++.-    ...+...-...-+|. ||+..-...+     
T Consensus       325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M----~~~R~~~~v~~l~g~-iYavGG~dg~-----  392 (571)
T KOG4441|consen  325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM----NTKRSDFGVAVLDGK-LYAVGGFDGE-----  392 (571)
T ss_pred             cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCc----cCccccceeEEECCE-EEEEeccccc-----
Confidence            3466665  47999987654 3      78889998876543221    111222122233666 8887643211     


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC------CceEEEEEccCCCCCcceeeeeC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS------NCRILRFWLHGPNSGKQDVFAEL  195 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~  195 (310)
                             ..-..+-+||+.+.+++.+..-...-.+.+...-++.||++.-.      -+.+.+||+.+.   ........
T Consensus       393 -------~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M  462 (571)
T KOG4441|consen  393 -------KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM  462 (571)
T ss_pred             -------cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc
Confidence                   12336889999999888765433333333333333459987541      257888988743   23333332


Q ss_pred             C--CCCCeeEECCCCCEEEEEe
Q 046018          196 P--GFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       196 ~--~~p~~i~~d~~G~l~va~~  215 (310)
                      +  ..-.++++- +|.||+...
T Consensus       463 ~~~R~~~g~a~~-~~~iYvvGG  483 (571)
T KOG4441|consen  463 NTRRSGFGVAVL-NGKIYVVGG  483 (571)
T ss_pred             ccccccceEEEE-CCEEEEECC
Confidence            1  222345553 577887643

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.20  E-value=1.4  Score=35.77  Aligned_cols=108  Identities=14%  Similarity=0.139  Sum_probs=65.8

Q ss_pred             ceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           50 LGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .||..+.  |.++.++..-   .|.+.|.++++.. +..... ++..+..+++...+  ++|.-+..             
T Consensus        49 QGL~~~~--g~i~esTG~yg~S~ir~~~L~~gq~~-~s~~l~-~~~~FgEGit~~gd--~~y~LTw~-------------  109 (262)
T COG3823          49 QGLEYLD--GHILESTGLYGFSKIRVSDLTTGQEI-FSEKLA-PDTVFGEGITKLGD--YFYQLTWK-------------  109 (262)
T ss_pred             cceeeeC--CEEEEeccccccceeEEEeccCceEE-EEeecC-Cccccccceeeccc--eEEEEEec-------------
Confidence            4888874  6888887652   3899999988753 222211 12334556665444  58888843             


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                          .|--+.||+++  ++.+..-.-...|=.+..|++.|+.+ .++..++--||.+
T Consensus       110 ----egvaf~~d~~t--~~~lg~~~y~GeGWgLt~d~~~Lims-dGsatL~frdP~t  159 (262)
T COG3823         110 ----EGVAFKYDADT--LEELGRFSYEGEGWGLTSDDKNLIMS-DGSATLQFRDPKT  159 (262)
T ss_pred             ----cceeEEEChHH--hhhhcccccCCcceeeecCCcceEee-CCceEEEecCHHH
Confidence                67778898864  33322111123566666777777776 4666777767653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.20  E-value=2.5  Score=40.29  Aligned_cols=189  Identities=10%  Similarity=0.015  Sum_probs=93.4

Q ss_pred             cceeceEEEeCCCCc-EEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGD-LYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~-l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .+-...+.+.+...+ |.++....+ +..+|..+... -+ .... .-.....++++.+|+. -.++...          
T Consensus       147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl-~~~~-~H~S~vtsL~~~~d~~-~~ls~~R----------  212 (775)
T KOG0319|consen  147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CL-HTMI-LHKSAVTSLAFSEDSL-ELLSVGR----------  212 (775)
T ss_pred             CceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HH-HHHH-hhhhheeeeeeccCCc-eEEEecc----------
Confidence            345556777774333 223333334 67777775432 01 0000 1123567888888887 4444422          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC-----CCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD-----RTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d-----~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                             +..+..||...-+.....+....-.+.++-++     +. .+++-...+.+..++..+.+....+...+.+..
T Consensus       213 -------Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~-~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~  284 (775)
T KOG0319|consen  213 -------DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGE-YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI  284 (775)
T ss_pred             -------CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcce-EEEEecCCceEEEEecccchhhhhhccCCchhh
Confidence                   45577888743222223333334455556554     33 333445667777777765422211111111122


Q ss_pred             CCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec-cchhhhhcccccCCCCceEEEEEC
Q 046018          199 PDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL-PLSFRQLHSLLVGGKPHATAIKLS  262 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d  262 (310)
                      .+.+..-..+.+...+....      +..+. ...+....+ ....+-..++..|..+..+.++-+
T Consensus       285 ~~~~~~~~~~~~l~vtaeQn------l~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN  344 (775)
T KOG0319|consen  285 DHLLAIESMSQLLLVTAEQN------LFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN  344 (775)
T ss_pred             hcceeccccCceEEEEccce------EEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence            34455555566666666555      44443 334444333 333444556666666666666654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=95.07  E-value=1.9  Score=36.79  Aligned_cols=105  Identities=10%  Similarity=0.102  Sum_probs=65.9

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      ..++.+ +..+|+++..+.|.++|.+++...++...  +.   ....|...+.-. ..|+.+.                 
T Consensus        59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth--~~---~i~ci~~~~~~~-~vIsgsW-----------------  114 (323)
T KOG1036|consen   59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTH--DE---GIRCIEYSYEVG-CVISGSW-----------------  114 (323)
T ss_pred             eeeccC-CceEEEeccCceEEEEEecCCcceeeccC--CC---ceEEEEeeccCC-eEEEccc-----------------
Confidence            566666 77899998888899999998876555332  11   244566555555 5666532                 


Q ss_pred             CceEEEEeCCCCeEEEEecCCcccc-eEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFAN-GVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~-gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                      +..|-.||+-. +...  .....++ --+++-.+.+|+|+ +.+.++..||+..
T Consensus       115 D~~ik~wD~R~-~~~~--~~~d~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  115 DKTIKFWDPRN-KVVV--GTFDQGKKVYCMDVSGNRLVVG-TSDRKVLIYDLRN  164 (323)
T ss_pred             CccEEEEeccc-cccc--cccccCceEEEEeccCCEEEEe-ecCceEEEEEccc
Confidence            77899999853 1211  1122222 23445556667775 6678999999864

>PRK13684 Ycf48-like protein; Provisional

Probab=95.02  E-value=2.3  Score=37.55  Aligned_cols=142  Identities=11%  Similarity=0.030  Sum_probs=70.6

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCC-eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG-LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      +...++++++ ++.++++...+.+++...+++ ..+.+ ..   .....++++++.++++ +|+...             
T Consensus       173 g~~~~i~~~~-~g~~v~~g~~G~i~~s~~~gg~tW~~~-~~---~~~~~l~~i~~~~~g~-~~~vg~-------------  233 (334)
T PRK13684        173 GVVRNLRRSP-DGKYVAVSSRGNFYSTWEPGQTAWTPH-QR---NSSRRLQSMGFQPDGN-LWMLAR-------------  233 (334)
T ss_pred             ceEEEEEECC-CCeEEEEeCCceEEEEcCCCCCeEEEe-eC---CCcccceeeeEcCCCC-EEEEec-------------
Confidence            4566788887 666555544433555422332 34333 11   2234678899999998 887752             


Q ss_pred             hcCCCCceEEEE-eCCCC-eEEEEecC-C---cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC
Q 046018          126 LSGDKTGRLLKY-EKTTK-EVTILLQG-L---AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP  199 (310)
Q Consensus       126 ~~~~~~g~v~~~-d~~~~-~~~~~~~~-~---~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  199 (310)
                           .| ..++ ..+.| .++.+... .   .....+++.+++. +|++. ..+.|+. ..+++..  .+......+.|
T Consensus       234 -----~G-~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~~-S~d~G~t--W~~~~~~~~~~  302 (334)
T PRK13684        234 -----GG-QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLLV-SKDGGKT--WEKDPVGEEVP  302 (334)
T ss_pred             -----CC-EEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEEE-eCCCCCC--CeECCcCCCCC
Confidence                 33 3334 23333 33322211 1   1234677777766 77763 3455554 3443321  12111111122


Q ss_pred             ---CeeEECCCCCEEEEEecCC
Q 046018          200 ---DNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       200 ---~~i~~d~~G~l~va~~~~~  218 (310)
                         ..+.+..++..|++...+.
T Consensus       303 ~~~~~~~~~~~~~~~~~G~~G~  324 (334)
T PRK13684        303 SNFYKIVFLDPEKGFVLGQRGV  324 (334)
T ss_pred             cceEEEEEeCCCceEEECCCce
Confidence               3455556677777654443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=0.13  Score=50.68  Aligned_cols=172  Identities=17%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             cceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .+...||.+++..++|.......| |+.+|...-+ +++. ...-.+...+..++...+-.+|+.+.             
T Consensus       116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~~-~~~~~~~~eI~~lsWNrkvqhILAS~-------------  180 (1049)
T KOG0307|consen  116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TPFT-PGSQAPPSEIKCLSWNRKVSHILASG-------------  180 (1049)
T ss_pred             CCceeeeeccccCCceeeccCCCCcEEEeccCCcC-CCCC-CCCCCCcccceEeccchhhhHHhhcc-------------
Confidence            366779999996666766665555 9999887422 1121 10000111122222222222244433             


Q ss_pred             hhcCCCCceEEEEeCCCCeEEE-EecC--CcccceEEEecCCCeEEEEecCC---ceEEEEEccCCCCCcceeeeeCCCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTI-LLQG--LAFANGVALSRDRTFILIAETSN---CRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~-~~~~--~~~~~gi~~~~d~~~lyv~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                          ..+|+...||....+-.+ +...  ...-++++|.||...-+++.+.+   ..|-.||++-... ..+.+..-...
T Consensus       181 ----s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~G  255 (1049)
T KOG0307|consen  181 ----SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQRG  255 (1049)
T ss_pred             ----CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-chhhhcccccc
Confidence                247788999986442221 1111  12246899999976544433443   3666777552111 11112110111


Q ss_pred             CCeeEECCCC-CEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          199 PDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       199 p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      .-.+.+.+.+ ++.+++...+++    +.....+|+.+..++..
T Consensus       256 ilslsWc~~D~~lllSsgkD~~i----i~wN~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  256 ILSLSWCPQDPRLLLSSGKDNRI----ICWNPNTGEVLGELPAQ  295 (1049)
T ss_pred             eeeeccCCCCchhhhcccCCCCe----eEecCCCceEeeecCCC
Confidence            2233333444 565665555543    33344567777776653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.00  E-value=0.91  Score=40.17  Aligned_cols=105  Identities=10%  Similarity=0.059  Sum_probs=64.8

Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEec
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAET  171 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~  171 (310)
                      .-++.|...|+|++|.++..                  +|.+-.|+..+-.++.+... ......+.+++++.+++ +..
T Consensus        97 c~V~~v~WtPeGRRLltgs~------------------SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmi-SgD  157 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQ------------------SGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMI-SGD  157 (464)
T ss_pred             cceeeEEEcCCCceeEeecc------------------cccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEE-EcC
Confidence            35788999999998888763                  67777777643333332222 23357899999998554 445


Q ss_pred             CCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCc
Q 046018          172 SNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ..+.|-.|+++=..   ...+.. -......++++++..-++++.+.+.
T Consensus       158 ~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~  203 (464)
T KOG0284|consen  158 KGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGT  203 (464)
T ss_pred             CCceEEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecCCCe
Confidence            66788777765211   111111 1123467778877777777776664

>PHA03098 kelch-like protein; Provisional

Probab=94.99  E-value=2.5  Score=40.01  Aligned_cols=109  Identities=9%  Similarity=-0.022  Sum_probs=58.6

Q ss_pred             CCcEEEEECCC------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018           58 TGDLYIADAYL------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT  131 (310)
Q Consensus        58 ~g~l~v~~~~~------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (310)
                      +++||+.....      .+.++|+.+++.+.....+    .......++.-+++ +|+.......           ....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp----~~r~~~~~~~~~~~-iYv~GG~~~~-----------~~~~  405 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI----FPRYNPCVVNVNNL-IYVIGGISKN-----------DELL  405 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC----cCCccceEEEECCE-EEEECCcCCC-----------Cccc
Confidence            57899886542      2778899888765442221    11122223334666 9987531100           0113


Q ss_pred             ceEEEEeCCCCeEEEEecCCcccce-EEEecCCCeEEEEecC--------CceEEEEEccC
Q 046018          132 GRLLKYEKTTKEVTILLQGLAFANG-VALSRDRTFILIAETS--------NCRILRFWLHG  183 (310)
Q Consensus       132 g~v~~~d~~~~~~~~~~~~~~~~~g-i~~~~d~~~lyv~~~~--------~~~i~~~~~~~  183 (310)
                      ..+.+||+.+++++.+........+ -+..-++ .+|+..-.        -..+++||+..
T Consensus       406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             ceEEEEeCCCCeeeecCCCCccccCceEEEECC-EEEEECCccCCCCCcccceEEEecCCC
Confidence            5689999998888765432111111 2223344 48886422        12488998764

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=94.90  E-value=1.2  Score=36.87  Aligned_cols=115  Identities=20%  Similarity=0.226  Sum_probs=71.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccc-cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPL-RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....||.+-|.+|+||.....++||.+|+.++..+.+........+ ....++-+.|--.||-+..              
T Consensus        27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs--------------   92 (236)
T PF14339_consen   27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVS--------------   92 (236)
T ss_pred             CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEc--------------
Confidence            4567899888899999998888899999999988766222111111 1234455556544577765              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCC----------ccc--ceEEEecC------CCeEEEEecCCceEEEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGL----------AFA--NGVALSRD------RTFILIAETSNCRILRF  179 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~----------~~~--~gi~~~~d------~~~lyv~~~~~~~i~~~  179 (310)
                          ..|.=+|+++++|........+          ..|  -+.++...      ...||-.+...+.|++-
T Consensus        93 ----~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q  160 (236)
T PF14339_consen   93 ----NTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQ  160 (236)
T ss_pred             ----cCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEe
Confidence                2677899999988754322111          122  23344332      33567777766666665

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=94.87  E-value=2  Score=35.93  Aligned_cols=140  Identities=11%  Similarity=0.157  Sum_probs=73.5

Q ss_pred             EEeccccccccCCCCCcccccc-ce---eceEEEeCCCCcEEEEECCC----ceEEEeCCCCeEEEEEee--cCCccccC
Q 046018           25 AVTTSQRKECVRPFAPDIEHIC-GR---PLGIRFDKKTGDLYIADAYL----GFQVVGPEGGLATQLVTE--AAGQPLRF   94 (310)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~-~~---p~gl~~d~~~g~l~v~~~~~----gi~~~d~~~~~~~~~~~~--~~~~~~~~   94 (310)
                      ...++..||..+++.+....-. +.   ..|..+..+.=.|-++....    -++.+|++.+.++.+.+.  +....+..
T Consensus        75 Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~  154 (364)
T COG4247          75 KKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSS  154 (364)
T ss_pred             ccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCCCCccccCccc
Confidence            3466777777776654442210 00   11233322111233333331    267889998888777654  23334455


Q ss_pred             CcceEE--eCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE---eCCCCeEEE----EecCCcccceEEEecCCC
Q 046018           95 TNDLDI--DEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY---EKTTKEVTI----LLQGLAFANGVALSRDRT  164 (310)
Q Consensus        95 ~~~i~~--d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~---d~~~~~~~~----~~~~~~~~~gi~~~~d~~  164 (310)
                      +.+++.  ++. |. +|+-...                +.|.+-.|   |...|++..    ...-.....|+..+..-.
T Consensus       155 ~YGl~lyrs~ktgd-~yvfV~~----------------~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG  217 (364)
T COG4247         155 AYGLALYRSPKTGD-YYVFVNR----------------RQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETG  217 (364)
T ss_pred             ceeeEEEecCCcCc-EEEEEec----------------CCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccc
Confidence            666664  454 55 5554432                23444333   333333321    111223457888887777


Q ss_pred             eEEEEecCCceEEEEEcc
Q 046018          165 FILIAETSNCRILRFWLH  182 (310)
Q Consensus       165 ~lyv~~~~~~~i~~~~~~  182 (310)
                      .||+++. +-.||.|..+
T Consensus       218 ~LYIaeE-dvaiWK~~Ae  234 (364)
T COG4247         218 FLYIAEE-DVAIWKYEAE  234 (364)
T ss_pred             eEEEeec-cceeeecccC
Confidence            8999964 5689999765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.84  E-value=2.5  Score=37.00  Aligned_cols=167  Identities=16%  Similarity=0.143  Sum_probs=90.0

Q ss_pred             CcccccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCC
Q 046018            2 PYTGVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGG   78 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~   78 (310)
                      .+++..||.|..|+-...+  |+                   +....+-..||+++. +..+++++... ..+.++..  
T Consensus        82 ~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~--  139 (433)
T KOG0268|consen   82 VASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP--  139 (433)
T ss_pred             hhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc-cceEEecCCcceeeeeccCC--
Confidence            3567778888888876643  32                   112224566899987 65666665542 23333321  


Q ss_pred             eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe-EEEEecCCcccceE
Q 046018           79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE-VTILLQGLAFANGV  157 (310)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~~~~~~~~~gi  157 (310)
                      -...+...      ....+|--...+. +++|-                   ...|-.||..... .+.+.-+......+
T Consensus       140 p~~tilg~------s~~~gIdh~~~~~-~FaTc-------------------Ge~i~IWD~~R~~Pv~smswG~Dti~sv  193 (433)
T KOG0268|consen  140 PLHTILGK------SVYLGIDHHRKNS-VFATC-------------------GEQIDIWDEQRDNPVSSMSWGADSISSV  193 (433)
T ss_pred             cceeeecc------ccccccccccccc-ccccc-------------------CceeeecccccCCccceeecCCCceeEE
Confidence            11112110      0122232223333 33332                   2236667754221 22222233334677


Q ss_pred             EEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          158 ALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       158 ~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      .++|-...++.+....+.|..||......-+ .+...  -.++.|++.|++-.+++.+....
T Consensus       194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~--mRTN~IswnPeafnF~~a~ED~n  252 (433)
T KOG0268|consen  194 KFNPVETSILASCASDRSIVLYDLRQASPLK-KVILT--MRTNTICWNPEAFNFVAANEDHN  252 (433)
T ss_pred             ecCCCcchheeeeccCCceEEEecccCCccc-eeeee--ccccceecCccccceeecccccc
Confidence            7888766677766678899999987432211 12222  24689999998878888777665

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=94.83  E-value=0.92  Score=40.18  Aligned_cols=127  Identities=13%  Similarity=0.051  Sum_probs=74.9

Q ss_pred             EEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC
Q 046018           61 LYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK  139 (310)
Q Consensus        61 l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~  139 (310)
                      .++.++.. .|..+|.++...+.....     ...+..+...++|..+..+.                  ++..+-.+|.
T Consensus       314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~-----gg~vtSl~ls~~g~~lLsss------------------RDdtl~viDl  370 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDIRSADKTRSVPL-----GGRVTSLDLSMDGLELLSSS------------------RDDTLKVIDL  370 (459)
T ss_pred             eeeecccccceEEEeccCCceeeEeec-----CcceeeEeeccCCeEEeeec------------------CCCceeeeec
Confidence            34444443 366677776654433221     12567788888888666553                  3566777787


Q ss_pred             CCCeEEEEecC-----CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC---CCeeEECCCCCEE
Q 046018          140 TTKEVTILLQG-----LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF---PDNVRSNSNGEFW  211 (310)
Q Consensus       140 ~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---p~~i~~d~~G~l~  211 (310)
                      .+.........     ...-+-..|+||+. ...+.+.+++|++|+..+++.   +.....+..   ...+.+++.|.-.
T Consensus       371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKl---E~~l~~s~s~~aI~s~~W~~sG~~L  446 (459)
T KOG0288|consen  371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKL---EKVLSLSTSNAAITSLSWNPSGSGL  446 (459)
T ss_pred             ccccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceE---EEEeccCCCCcceEEEEEcCCCchh
Confidence            66555443221     12246789999998 445667889999999886533   322222222   3456777777544


Q ss_pred             EEE
Q 046018          212 VAL  214 (310)
Q Consensus       212 va~  214 (310)
                      ++.
T Consensus       447 lsa  449 (459)
T KOG0288|consen  447 LSA  449 (459)
T ss_pred             hcc
Confidence            443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=94.70  E-value=0.51  Score=41.61  Aligned_cols=98  Identities=13%  Similarity=0.093  Sum_probs=59.9

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCC--------C-----CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeC
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPE--------G-----GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDS  112 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~--------~-----~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~  112 (310)
                      ...+.+.+++ +|+|.......| |..+-..        +     .+.-.......+ -...+.+++..++++ +.++.+
T Consensus        66 ~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~-~l~s~s  142 (434)
T KOG1009|consen   66 RAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSN-FLVSGS  142 (434)
T ss_pred             ceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCc-eeeeee
Confidence            4566788888 888887766655 3333211        2     100001011111 123578899999998 555543


Q ss_pred             CCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCC
Q 046018          113 STSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRT  164 (310)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~  164 (310)
                      -                 +..++.||...|...... .....++|++++|-++
T Consensus       143 ~-----------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q  178 (434)
T KOG1009|consen  143 V-----------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ  178 (434)
T ss_pred             c-----------------cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence            2                 667889998888776544 3345689999999776

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=94.61  E-value=0.31  Score=40.13  Aligned_cols=139  Identities=15%  Similarity=0.161  Sum_probs=67.3

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCC-CCe------EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPE-GGL------ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~-~~~------~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      -|+..| +++||+.... ++++-.+. ...      -+++..   + .-..-..|++++.|- ||...            
T Consensus        38 ~i~~~P-~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~---g-~W~~F~~i~~d~~G~-LYaV~------------   98 (229)
T PF14517_consen   38 DIAAGP-NGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGD---G-GWNSFKFIFFDPTGV-LYAVT------------   98 (229)
T ss_dssp             EEEE-T-TS-EEEEETT-EEEEES---STT--HHHH-EEEE----S--GGG-SEEEE-TTS--EEEEE------------
T ss_pred             eEEEcC-CceEEEEECC-ceEEecCCccCcccccccCccccc---C-cccceeEEEecCCcc-EEEec------------
Confidence            477888 9999999754 67776321 111      122221   1 122445899999998 99776            


Q ss_pred             hhhcCCCCceEEEEeCCCCe--------EEEE-ecCCcccceEEEecCCCeEEEEecCCceEEEE-EccCCCCC--cc-e
Q 046018          124 SILSGDKTGRLLKYEKTTKE--------VTIL-LQGLAFANGVALSRDRTFILIAETSNCRILRF-WLHGPNSG--KQ-D  190 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~--------~~~~-~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~-~~~~~~~~--~~-~  190 (310)
                            .+|.|++..+-+..        .+.+ ..+-...+-+.+.++|. ||..+. ++++++. .+.+....  .. .
T Consensus        99 ------~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~-dg~~~~~~~p~~~~~~W~~~s~  170 (229)
T PF14517_consen   99 ------PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITP-DGRLYRRYRPDGGSDRWLSGSG  170 (229)
T ss_dssp             ------TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET-TE-EEEE---SSTT--HHHH-E
T ss_pred             ------cccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcC-CCceEEeCCCCCCCCccccccc
Confidence                  36778877542211        1222 23333456778888886 888864 4577777 44432110  01 1


Q ss_pred             eeeeCC-CCCCeeEECCCCCEEEEEec
Q 046018          191 VFAELP-GFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       191 ~~~~~~-~~p~~i~~d~~G~l~va~~~  216 (310)
                      .+.... ..+..|.+.++|+||.....
T Consensus       171 ~v~~~gw~~~~~i~~~~~g~L~~V~~~  197 (229)
T PF14517_consen  171 LVGGGGWDSFHFIFFSPDGNLWAVKSN  197 (229)
T ss_dssp             EEESSSGGGEEEEEE-TTS-EEEE-ET
T ss_pred             eeccCCcccceEEeeCCCCcEEEEecC
Confidence            111111 23567888999999988433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=94.59  E-value=2.6  Score=35.98  Aligned_cols=170  Identities=13%  Similarity=0.122  Sum_probs=93.2

Q ss_pred             cccccCcEEEEEeCCCCC---eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCCceEEEeCCCC
Q 046018            3 YTGVADGRILKWQGDELG---WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGG   78 (310)
Q Consensus         3 ~~~~~~~~i~~~~~~~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~   78 (310)
                      -++..|..|..|....++   |+-                   ....+...++.+.+ +++ |+-+.....+..+|.+++
T Consensus        63 aSgG~Dr~I~LWnv~gdceN~~~l-------------------kgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   63 ASGGSDRAIVLWNVYGDCENFWVL-------------------KGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             eecCCcceEEEEeccccccceeee-------------------ccccceeEeeeecc-CCCEEEEecCCceEEEEecccc
Confidence            356677788888765553   551                   12225566788888 555 454544456999999998


Q ss_pred             eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEE
Q 046018           79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA  158 (310)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~  158 (310)
                      +...-...    -....|.+.....|- ..+++.                ..++++..||...+......+..-.-..++
T Consensus       123 ~~~rk~k~----h~~~vNs~~p~rrg~-~lv~Sg----------------sdD~t~kl~D~R~k~~~~t~~~kyqltAv~  181 (338)
T KOG0265|consen  123 KRIRKHKG----HTSFVNSLDPSRRGP-QLVCSG----------------SDDGTLKLWDIRKKEAIKTFENKYQLTAVG  181 (338)
T ss_pred             eeeehhcc----ccceeeecCccccCC-eEEEec----------------CCCceEEEEeecccchhhccccceeEEEEE
Confidence            75432221    123567677666676 444442                237888889875443322222222234566


Q ss_pred             EecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018          159 LSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       159 ~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~  216 (310)
                      |..++.-++. .--++.|-+||+.....  .-....-.....+|...++|....++.=
T Consensus       182 f~d~s~qv~s-ggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsM  236 (338)
T KOG0265|consen  182 FKDTSDQVIS-GGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSM  236 (338)
T ss_pred             ecccccceee-ccccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccc
Confidence            6665553443 34567788888752210  0011111112356777777766665543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.55  E-value=3.1  Score=37.75  Aligned_cols=142  Identities=13%  Similarity=0.025  Sum_probs=75.0

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      .++...+ +|.+++....+.+++-.-.+... +.+..    .......++.+.++|. +|++..                
T Consensus       242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~----~~~~~l~~v~~~~dg~-l~l~g~----------------  299 (398)
T PLN00033        242 STVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNR----ASARRIQNMGWRADGG-LWLLTR----------------  299 (398)
T ss_pred             eeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecC----CCccceeeeeEcCCCC-EEEEeC----------------
Confidence            3456666 77888877765566654444432 32311    1223567888899999 888772                


Q ss_pred             CCCceEEEEeCCCC-----eEEEEec--CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee-eeCCCCCC
Q 046018          129 DKTGRLLKYEKTTK-----EVTILLQ--GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF-AELPGFPD  200 (310)
Q Consensus       129 ~~~g~v~~~d~~~~-----~~~~~~~--~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~p~  200 (310)
                        .|.+++-+-+..     .+.....  .......+.+.+|+. +|++. ..+.+++- .++++.=..... ...+..-.
T Consensus       300 --~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly  374 (398)
T PLN00033        300 --GGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLY  374 (398)
T ss_pred             --CceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEE-CCCcEEEe-CCCCcceeEccccCCCCccee
Confidence              455555433321     2222211  112245677777766 77763 33455554 343322111110 11222224


Q ss_pred             eeEECCCCCEEEEEecCC
Q 046018          201 NVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~  218 (310)
                      .+.+..+++.|+....+.
T Consensus       375 ~v~f~~~~~g~~~G~~G~  392 (398)
T PLN00033        375 SVKFFDDKKGFVLGNDGV  392 (398)
T ss_pred             EEEEcCCCceEEEeCCcE
Confidence            678777788888875544

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=94.52  E-value=0.04  Score=27.92  Aligned_cols=17  Identities=18%  Similarity=0.538  Sum_probs=13.7

Q ss_pred             CCeeEECCCCCEEEEEe
Q 046018          199 PDNVRSNSNGEFWVALH  215 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~  215 (310)
                      ...|+.|++|+||+++.
T Consensus         7 I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    7 IYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEEE-TTSCEEEEET
T ss_pred             EEEEEEcCCcCEEEEeC
Confidence            35789999999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=94.48  E-value=4  Score=37.73  Aligned_cols=121  Identities=16%  Similarity=0.102  Sum_probs=70.7

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE-EEEecCCceEEEEEccCCCCCcceeeeeCCCCCC-eeEECCCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI-LIAETSNCRILRFWLHGPNSGKQDVFAELPGFPD-NVRSNSNG  208 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l-yv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~i~~d~~G  208 (310)
                      ...|+.++.++....+-....+..+.++|+++++-. .+-.-+=.++..||+++.      .+.+++..|. .+.+++.|
T Consensus       250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~egpRN~~~fnp~g  323 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPEGPRNTAFFNPHG  323 (566)
T ss_pred             cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCCCCccceEECCCC
Confidence            446888887744444333444456899999998743 344445568999998753      3445554564 48899999


Q ss_pred             CEEE-EEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEE
Q 046018          209 EFWV-ALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLE  272 (310)
Q Consensus       209 ~l~v-a~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~  272 (310)
                      +|.+ |.+++..--++  ..+-+..+.+..+..             ....++...|+|+.+.+..
T Consensus       324 ~ii~lAGFGNL~G~mE--vwDv~n~K~i~~~~a-------------~~tt~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  324 NIILLAGFGNLPGDME--VWDVPNRKLIAKFKA-------------ANTTVFEWSPDGEYFLTAT  373 (566)
T ss_pred             CEEEEeecCCCCCceE--EEeccchhhcccccc-------------CCceEEEEcCCCcEEEEEe
Confidence            8655 55554321111  112223333333221             2345677888888776654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.45  E-value=0.12  Score=46.39  Aligned_cols=61  Identities=16%  Similarity=0.206  Sum_probs=33.5

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe-EEEE----ec---------------CCcc
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE-VTIL----LQ---------------GLAF  153 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~----~~---------------~~~~  153 (310)
                      .+.+|.++.|.++|||+...                 .|.+..||..+-. .+.+    ..               -...
T Consensus       313 LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg  375 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG  375 (461)
T ss_dssp             ----EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred             ceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence            47899999999999999954                 7889999865431 1111    10               0134


Q ss_pred             cceEEEecCCCeEEEEec
Q 046018          154 ANGVALSRDRTFILIAET  171 (310)
Q Consensus       154 ~~gi~~~~d~~~lyv~~~  171 (310)
                      |+-+.+|.||++|||+++
T Consensus       376 PqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  376 PQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---EEE-TTSSEEEEE--
T ss_pred             CCeEEEccCCeEEEEEee
Confidence            788999999999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.35  E-value=3.2  Score=36.06  Aligned_cols=142  Identities=10%  Similarity=0.054  Sum_probs=59.4

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEE-EeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQV-VGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~-~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      +....+...+ +|++.++...+.++. .++.....+++...    ...++..|.+.+++. ||+...             
T Consensus       145 gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~----~~~riq~~gf~~~~~-lw~~~~-------------  205 (302)
T PF14870_consen  145 GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN----SSRRIQSMGFSPDGN-LWMLAR-------------  205 (302)
T ss_dssp             --EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS--EEEEET-------------
T ss_pred             ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccC----ccceehhceecCCCC-EEEEeC-------------
Confidence            4455666666 777555554444543 35443333333221    224678899999999 999872             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCC----ccc---ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGL----AFA---NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPG  197 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~----~~~---~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~  197 (310)
                           .|.|..=+ .....+......    ...   -.+++.+++. +|++ ..++.|++ ..|+++.-+..... ..+.
T Consensus       206 -----Gg~~~~s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~-gg~G~l~~-S~DgGktW~~~~~~~~~~~  276 (302)
T PF14870_consen  206 -----GGQIQFSD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAV-GGSGTLLV-STDGGKTWQKDRVGENVPS  276 (302)
T ss_dssp             -----TTEEEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEE-ESTT-EEE-ESSTTSS-EE-GGGTTSSS
T ss_pred             -----CcEEEEcc-CCCCccccccccCCcccCceeeEEEEecCCCC-EEEE-eCCccEEE-eCCCCccceECccccCCCC
Confidence                 34444444 223333332211    111   2357777765 7775 45566554 35554332111111 1233


Q ss_pred             CCCeeEECCCCCEEEEEec
Q 046018          198 FPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~  216 (310)
                      ....|.+..+..-|+-..+
T Consensus       277 n~~~i~f~~~~~gf~lG~~  295 (302)
T PF14870_consen  277 NLYRIVFVNPDKGFVLGQD  295 (302)
T ss_dssp             ---EEEEEETTEEEEE-ST
T ss_pred             ceEEEEEcCCCceEEECCC
Confidence            3344555444445554333

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.32  E-value=0.18  Score=29.55  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             eEEEEecCCc-eEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018          165 FILIAETSNC-RILRFWLHGPNSGKQDVFAELPGFPDNVRSNS  206 (310)
Q Consensus       165 ~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  206 (310)
                      +|||++...+ +|.+-+++|..  ...++...-..|.++++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~--~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN--RRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS--EEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCCC--eEEEEECCCCCcCEEEECC
Confidence            5999999999 99999998752  2233433346799999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.31  E-value=3.9  Score=36.87  Aligned_cols=150  Identities=19%  Similarity=0.140  Sum_probs=79.7

Q ss_pred             EEEEEeCCCCC-eEEEEEec--cccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEe
Q 046018           10 RILKWQGDELG-WTEFAVTT--SQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVT   85 (310)
Q Consensus        10 ~i~~~~~~~~~-W~~~~~~~--~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~   85 (310)
                      .++++...+++ |+-+.+.+  ++.+++.+-+.... ....+...++++-.+..+||.+....+|-.++.+....  + .
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~--v-e  280 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY--V-E  280 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH--H-H
Confidence            45555555555 54333322  22345544322222 33445677898877678999998887777776653321  1 1


Q ss_pred             ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCe
Q 046018           86 EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTF  165 (310)
Q Consensus        86 ~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~  165 (310)
                      ...+-+ ..+.+|-....++ +.....               .+.+-+|+.+ ++ ..-.++......+..+++-.+.. 
T Consensus       281 tlyGHq-d~v~~IdaL~reR-~vtVGg---------------rDrT~rlwKi-~e-esqlifrg~~~sidcv~~In~~H-  340 (479)
T KOG0299|consen  281 TLYGHQ-DGVLGIDALSRER-CVTVGG---------------RDRTVRLWKI-PE-ESQLIFRGGEGSIDCVAFINDEH-  340 (479)
T ss_pred             HHhCCc-cceeeechhcccc-eEEecc---------------ccceeEEEec-cc-cceeeeeCCCCCeeeEEEecccc-
Confidence            111110 1233444445555 332221               1234445555 33 22222334445788899887764 


Q ss_pred             EEEEecCCceEEEEEccC
Q 046018          166 ILIAETSNCRILRFWLHG  183 (310)
Q Consensus       166 lyv~~~~~~~i~~~~~~~  183 (310)
                       |++.+.++.|..|++..
T Consensus       341 -fvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  341 -FVSGSDNGSIALWSLLK  357 (479)
T ss_pred             -eeeccCCceEEEeeecc
Confidence             56778999999998764

>PHA02790 Kelch-like protein; Provisional

Probab=94.27  E-value=1.7  Score=40.61  Aligned_cols=97  Identities=7%  Similarity=0.020  Sum_probs=56.7

Q ss_pred             CCcEEEEECCC----ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018           58 TGDLYIADAYL----GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR  133 (310)
Q Consensus        58 ~g~l~v~~~~~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~  133 (310)
                      +|+||+.....    .+.++|+++.+.+.....    +.......++.-+|+ ||+..                    |.
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m----~~~r~~~~~~~~~~~-IYv~G--------------------G~  416 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST----YYPHYKSCALVFGRR-LFLVG--------------------RN  416 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC----CCccccceEEEECCE-EEEEC--------------------Cc
Confidence            68999986532    267889998876543221    111222233345676 99873                    34


Q ss_pred             EEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC-----CceEEEEEcc
Q 046018          134 LLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS-----NCRILRFWLH  182 (310)
Q Consensus       134 v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~  182 (310)
                      +-+||+++.+++.+.+ +..|   .+++.- +++ +|+..-.     ...+.+||+.
T Consensus       417 ~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~~-IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        417 AEFYCESSNTWTLIDD-PIYPRDNPELIIV-DNK-LLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             eEEecCCCCcEeEcCC-CCCCccccEEEEE-CCE-EEEECCcCCCcccceEEEEECC
Confidence            6789999988887643 2222   345444 454 8886432     1356666655

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.22  E-value=4.2  Score=36.95  Aligned_cols=121  Identities=11%  Similarity=0.132  Sum_probs=66.3

Q ss_pred             ceEEEeCCCCcEEEEE-CCCc-----eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           50 LGIRFDKKTGDLYIAD-AYLG-----FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~-~~~g-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .++.+++ +|+.++.. ..+|     +..+|.++++...  +...   ......++..++++.+|.+.........    
T Consensus       127 ~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~----  196 (414)
T PF02897_consen  127 GGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTS----  196 (414)
T ss_dssp             EEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-----
T ss_pred             eeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcC--Cccc---ccccceEEEeCCCCEEEEEEeCcccccc----
Confidence            3678888 66644333 2222     7788999886432  2111   1123338999998867766643210000    


Q ss_pred             hhhcCCCCceEEEEeCCCCeE--EEEecCCccc---ceEEEecCCCeEEEEec--CC-ceEEEEEccC
Q 046018          124 SILSGDKTGRLLKYEKTTKEV--TILLQGLAFA---NGVALSRDRTFILIAET--SN-CRILRFWLHG  183 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~~---~gi~~~~d~~~lyv~~~--~~-~~i~~~~~~~  183 (310)
                         .......|+++...+...  +.+......+   -++..++|+++|++...  .+ ..|+.++...
T Consensus       197 ---~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  197 ---DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             ---CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             ---cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence               000134588888765532  2444333333   37888999998877433  23 5788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=94.19  E-value=1.3  Score=38.22  Aligned_cols=149  Identities=10%  Similarity=0.091  Sum_probs=80.5

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeC-CCCeE-EEEEeecCC--ccccCCcceEEeCCCC-EEEEEeCCCchhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGP-EGGLA-TQLVTEAAG--QPLRFTNDLDIDEHKG-VIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~-~~~~~-~~~~~~~~~--~~~~~~~~i~~d~~g~-~l~v~~~~~~~~~~~~~  122 (310)
                      ..+.|++++ +|+=.++.....|.+||. +.+.. ........+  .....+..++++|-.. .+-+....+        
T Consensus       160 aAhsL~Fs~-DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--------  230 (406)
T KOG2919|consen  160 AAHSLQFSP-DGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--------  230 (406)
T ss_pred             hheeEEecC-CCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc--------
Confidence            456899999 676555545556888876 44432 111111111  1122345667776533 233333221        


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC----C
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG----F  198 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~  198 (310)
                              .-.|+..+.. +-+..+.........+.+.+||++||........|..||+.-.    ...+-.+.+    .
T Consensus       231 --------~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~----~~pv~~L~rhv~~T  297 (406)
T KOG2919|consen  231 --------RVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS----RDPVYALERHVGDT  297 (406)
T ss_pred             --------eeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc----cchhhhhhhhccCc
Confidence                    2235555532 2334343334456678999999999999888999999998731    111111111    1


Q ss_pred             CCee--EECCCCCEEEEEecCC
Q 046018          199 PDNV--RSNSNGEFWVALHAKK  218 (310)
Q Consensus       199 p~~i--~~d~~G~l~va~~~~~  218 (310)
                      .-.|  .+|++|++.++....+
T Consensus       298 NQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  298 NQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             cceEEEecCCCCceeeccCCCc
Confidence            1223  4568888877653333

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=94.09  E-value=0.64  Score=42.98  Aligned_cols=87  Identities=11%  Similarity=0.112  Sum_probs=57.9

Q ss_pred             CceEEEEeCCCCeEE-EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC-CCcceeeee---CCC-----CCC
Q 046018          131 TGRLLKYEKTTKEVT-ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN-SGKQDVFAE---LPG-----FPD  200 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~-~~~~~~~~~---~~~-----~p~  200 (310)
                      ...||++|++-|++- ++......-|.+.+++-+. |+.+.+.++.|.-||+.... .+.......   .|+     .+.
T Consensus       154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT  232 (703)
T KOG2321|consen  154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT  232 (703)
T ss_pred             CcceEEEEccccccccccccccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence            446999999878764 3444455678899998777 88888889999999987531 111111111   222     357


Q ss_pred             eeEECCCC-CEEEEEecCC
Q 046018          201 NVRSNSNG-EFWVALHAKK  218 (310)
Q Consensus       201 ~i~~d~~G-~l~va~~~~~  218 (310)
                      .+.++.+| ++-|++..+.
T Consensus       233 al~F~d~gL~~aVGts~G~  251 (703)
T KOG2321|consen  233 ALKFRDDGLHVAVGTSTGS  251 (703)
T ss_pred             EEEecCCceeEEeeccCCc
Confidence            78998888 5666666655

>KOG4328 consensus WD40 protein [Function unknown]

Probab=93.97  E-value=3.9  Score=36.89  Aligned_cols=166  Identities=11%  Similarity=0.017  Sum_probs=89.0

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      .++-+..+++.+++++.-+-...+|.++...+.......   ...+++|++.|-..++++|. +                
T Consensus       283 s~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh---~kKI~sv~~NP~~p~~laT~-s----------------  342 (498)
T KOG4328|consen  283 SSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH---KKKITSVALNPVCPWFLATA-S----------------  342 (498)
T ss_pred             eeccccCCCccEEEeecccceEEEEeecCCccchhhhhh---hcccceeecCCCCchheeec-c----------------
Confidence            355566656778888776545556665544321111101   12688899999888344443 2                


Q ss_pred             CCceEEEEeCCC--CeEEEEecCC---cccceEEEecCCCeEEEEecCCceEEEEEcc--CCCCCc-ceeeee-CC---C
Q 046018          130 KTGRLLKYEKTT--KEVTILLQGL---AFANGVALSRDRTFILIAETSNCRILRFWLH--GPNSGK-QDVFAE-LP---G  197 (310)
Q Consensus       130 ~~g~v~~~d~~~--~~~~~~~~~~---~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~--~~~~~~-~~~~~~-~~---~  197 (310)
                      .++.+..||...  ++...+....   ...+...|+|++.. +++....+.|.+||..  +.+... ..+..+ ..   -
T Consensus       343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl  421 (498)
T KOG4328|consen  343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL  421 (498)
T ss_pred             cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccc
Confidence            255666676421  1111111111   23578889999887 5555777899999863  111111 111111 11   1


Q ss_pred             CCCeeEECCCCCEEEEEecCCccceeeeeeccccccE-Eeeccch
Q 046018          198 FPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKT-LLKLPLS  241 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~-~~~~~~~  241 (310)
                      .|--.++|++-++.+...-...     |.++++.++. +..+..|
T Consensus       422 T~fKA~W~P~~~li~vg~~~r~-----IDv~~~~~~q~v~el~~P  461 (498)
T KOG4328|consen  422 TPFKAAWDPDYNLIVVGRYPRP-----IDVFDGNGGQMVCELHDP  461 (498)
T ss_pred             cchhheeCCCccEEEEeccCcc-----eeEEcCCCCEEeeeccCc
Confidence            2444678888776555444443     6777665554 5655444

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=93.91  E-value=2.8  Score=35.76  Aligned_cols=63  Identities=11%  Similarity=0.027  Sum_probs=40.8

Q ss_pred             ccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeeeCCCCCCeeEECCCCC-EEEEEec
Q 046018          153 FANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAELPGFPDNVRSNSNGE-FWVALHA  216 (310)
Q Consensus       153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~  216 (310)
                      ....|+|+|.-..|+.+.++.+.|.+|+.... .... ......++-+-.+++..||. ++.+.-+
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~D   93 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCD   93 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccC
Confidence            35689999966668888899999999998642 1111 11222334446788888885 4444433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.91  E-value=7.3  Score=38.56  Aligned_cols=23  Identities=13%  Similarity=0.176  Sum_probs=19.6

Q ss_pred             CCcEEEEECCCceEEEeCCCCeE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLA   80 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~   80 (310)
                      ++.||+++..+.|+.+|.++++.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~  216 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKE  216 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE
Confidence            67899998877799999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=93.84  E-value=0.79  Score=43.58  Aligned_cols=114  Identities=15%  Similarity=0.173  Sum_probs=76.1

Q ss_pred             eeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....|++|+ .-++.+..-. ..|..+|.+.++.++..+...+.. ..+.-+..||.|  +|++.+-             
T Consensus       598 TlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e-G~lIKv~lDPSg--iY~atSc-------------  660 (1080)
T KOG1408|consen  598 TLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE-GDLIKVILDPSG--IYLATSC-------------  660 (1080)
T ss_pred             eEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCC-CceEEEEECCCc--cEEEEee-------------
Confidence            344889998 4444333333 459999999988776655432221 245567889998  5666543             


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                         .+.++..||-.+|++.....+.. ...|+-|.+|=++|+-+ ++.++|++|.+.
T Consensus       661 ---sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv-sgDgCIFvW~lp  713 (1080)
T KOG1408|consen  661 ---SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV-SGDGCIFVWKLP  713 (1080)
T ss_pred             ---cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee-cCCceEEEEECc
Confidence               25678899988887654333322 35799999999877655 788999999763

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=93.83  E-value=4  Score=35.25  Aligned_cols=125  Identities=10%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEE-----EEecCCcccceEEEecCCCeEEE
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVT-----ILLQGLAFANGVALSRDRTFILI  168 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-----~~~~~~~~~~gi~~~~d~~~lyv  168 (310)
                      .+.+++++.||+ -+++-..                 ++.|..|+.++-..+     ...-....|.-++|+||=+-+++
T Consensus        88 ~vt~~~FsSdGK-~lat~~~-----------------Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv  149 (420)
T KOG2096|consen   88 EVTDVAFSSDGK-KLATISG-----------------DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV  149 (420)
T ss_pred             ceeeeEEcCCCc-eeEEEeC-----------------CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence            578999999999 5555433                 566777776542111     11123446889999999886766


Q ss_pred             EecCCceEEEEEccCCCCCcce----eeee--CCC--CC--CeeEECCCCCEEEEEecCCccceeeeeeccccccEEeec
Q 046018          169 AETSNCRILRFWLHGPNSGKQD----VFAE--LPG--FP--DNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL  238 (310)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~----~~~~--~~~--~p--~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~  238 (310)
                      +-...+.|++|-+..++.+...    .+.+  .+.  ..  -++-+ +++.-|+..-.....    |..++..|+.+..+
T Consensus       150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~----i~lw~lkGq~L~~i  224 (420)
T KOG2096|consen  150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTK----ICLWDLKGQLLQSI  224 (420)
T ss_pred             EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCc----EEEEecCCceeeee
Confidence            6567788988876522111111    1111  110  01  11222 334444543333322    66666678888887


Q ss_pred             cch
Q 046018          239 PLS  241 (310)
Q Consensus       239 ~~~  241 (310)
                      ...
T Consensus       225 dtn  227 (420)
T KOG2096|consen  225 DTN  227 (420)
T ss_pred             ccc
Confidence            654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.79  E-value=4.3  Score=35.88  Aligned_cols=87  Identities=10%  Similarity=0.122  Sum_probs=57.9

Q ss_pred             CCceEEEEeCCCCeEEEEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCC
Q 046018          130 KTGRLLKYEKTTKEVTILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSN  207 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  207 (310)
                      ..+.|..||+..++.-+..-.  -.....+++.|+++++|++++ .+.+..||..++.+.. ..+....|.+.+|...+.
T Consensus       224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g-~~~kg~tGsirsih~hp~  301 (412)
T KOG3881|consen  224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLG-CGLKGITGSIRSIHCHPT  301 (412)
T ss_pred             cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeec-cccCCccCCcceEEEcCC
Confidence            367899999886544332211  122367889999999998864 5799999988653311 113335578899999998


Q ss_pred             CCEEEEEecCC
Q 046018          208 GEFWVALHAKK  218 (310)
Q Consensus       208 G~l~va~~~~~  218 (310)
                      +.+..++.-.+
T Consensus       302 ~~~las~GLDR  312 (412)
T KOG3881|consen  302 HPVLASCGLDR  312 (412)
T ss_pred             CceEEeeccce
Confidence            87766654333

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.76  E-value=3.6  Score=37.31  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEE--EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLAT--QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~--~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....++.+.+ +|.+|++...+++++-+-.+....  .+...........+.++.+.++++ +|++..            
T Consensus       281 ~~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~------------  346 (398)
T PLN00033        281 RRIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGG------------  346 (398)
T ss_pred             cceeeeeEcC-CCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEEC------------
Confidence            4556788877 899999987766665533322110  122211111122467788888998 988872            


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEe--cCCcc-cceEEEecCCCeEEEEecCCceEEEE
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILL--QGLAF-ANGVALSRDRTFILIAETSNCRILRF  179 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~  179 (310)
                            .|.+++-...++.++...  ..... -..+.+.++++ .|++ ..++.|.++
T Consensus       347 ------~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~  396 (398)
T PLN00033        347 ------SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY  396 (398)
T ss_pred             ------CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence                  455665544434445432  11111 23666665555 7776 345667665

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=7.8  Score=38.25  Aligned_cols=86  Identities=9%  Similarity=0.058  Sum_probs=55.7

Q ss_pred             CceEEEEeCCCCeEEEEe--cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC
Q 046018          131 TGRLLKYEKTTKEVTILL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG  208 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  208 (310)
                      .-.+++++- ++.+++-.  .......++.+.|.-. |+++++..+.|.+||+...  +..+.+......-.-++.-|..
T Consensus       229 qVKlWrmne-tKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR--t~v~tfrrendRFW~laahP~l  304 (1202)
T KOG0292|consen  229 QVKLWRMNE-TKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR--TSVQTFRRENDRFWILAAHPEL  304 (1202)
T ss_pred             eeeEEEecc-ccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc--cceeeeeccCCeEEEEEecCCc
Confidence            445777764 45555421  2233456888888666 8888888999999998732  2234443322223457888889


Q ss_pred             CEEEEEecCCcc
Q 046018          209 EFWVALHAKKGL  220 (310)
Q Consensus       209 ~l~va~~~~~~~  220 (310)
                      |||.|.++++-+
T Consensus       305 NLfAAgHDsGm~  316 (1202)
T KOG0292|consen  305 NLFAAGHDSGMI  316 (1202)
T ss_pred             ceeeeecCCceE
Confidence            999998888754

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.71  E-value=4.9  Score=38.52  Aligned_cols=71  Identities=10%  Similarity=0.141  Sum_probs=46.8

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE---EeCCCCeEEE-----EecCCcc-cceEEEecCCC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK---YEKTTKEVTI-----LLQGLAF-ANGVALSRDRT  164 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~---~d~~~~~~~~-----~~~~~~~-~~gi~~~~d~~  164 (310)
                      .+..+.++|||.++.+..                   .+.|+.   ...++|..+.     +...... +..+.|..++.
T Consensus       449 ~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~  509 (591)
T PRK13616        449 PISELQLSRDGVRAAMII-------------------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS  509 (591)
T ss_pred             CcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE
Confidence            588999999999888875                   344544   3334454332     3334444 47789998887


Q ss_pred             eEEEEec-CCceEEEEEccCC
Q 046018          165 FILIAET-SNCRILRFWLHGP  184 (310)
Q Consensus       165 ~lyv~~~-~~~~i~~~~~~~~  184 (310)
                       |++... .+..++.++.+|.
T Consensus       510 -L~V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        510 -LVVGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             -EEEEecCCCCceEEEecCCc
Confidence             656433 3457899988875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=93.69  E-value=1  Score=39.38  Aligned_cols=86  Identities=10%  Similarity=0.106  Sum_probs=51.4

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF  210 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  210 (310)
                      ++.++.||.-.+....-..-...+|+|+|+| ..+.+++......+|.||+..-.. ...+..+--...-.+.++|-|.=
T Consensus       209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~-p~~v~~dhvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR-PLNVHKDHVSAVMDVDFSPTGQE  286 (433)
T ss_pred             CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhcc-cchhhcccceeEEEeccCCCcch
Confidence            6678999975443322112245799999999 566888888889999999873210 01111111011234667788866


Q ss_pred             EEEEecCC
Q 046018          211 WVALHAKK  218 (310)
Q Consensus       211 ~va~~~~~  218 (310)
                      +|+.....
T Consensus       287 fvsgsyDk  294 (433)
T KOG0268|consen  287 FVSGSYDK  294 (433)
T ss_pred             hccccccc
Confidence            66554444

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.68  E-value=0.37  Score=28.17  Aligned_cols=39  Identities=21%  Similarity=0.305  Sum_probs=29.0

Q ss_pred             EEEEEeCCCchhhhhhhhhhhcCCCCc-eEEEEeCCCCeEEE-EecCCcccceEEEec
Q 046018          106 VIYFTDSSTSFQRRQFMSSILSGDKTG-RLLKYEKTTKEVTI-LLQGLAFANGVALSR  161 (310)
Q Consensus       106 ~l~v~~~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~  161 (310)
                      +||+++..                 .. .+.+.+.++...++ +...+..|.||++++
T Consensus         2 ~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            38999965                 34 78888887666554 456788999999875

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.63  E-value=3.7  Score=36.42  Aligned_cols=150  Identities=11%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEee-cCCc--cccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTE-AAGQ--PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~-~~~~--~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      +....|.+++ +|++.+........+++.+++..  ++.. +.+.  .+...+ .-.|+.+..++++....         
T Consensus       187 ~eV~DL~FS~-dgk~lasig~d~~~VW~~~~g~~--~a~~t~~~k~~~~~~cR-F~~d~~~~~l~laa~~~---------  253 (398)
T KOG0771|consen  187 AEVKDLDFSP-DGKFLASIGADSARVWSVNTGAA--LARKTPFSKDEMFSSCR-FSVDNAQETLRLAASQF---------  253 (398)
T ss_pred             CccccceeCC-CCcEEEEecCCceEEEEeccCch--hhhcCCcccchhhhhce-ecccCCCceEEEEEecC---------
Confidence            5667899999 88887777666667777777732  2221 1111  111222 12233333377776432         


Q ss_pred             hhhcCCCCceEEEEeC--CCC----eEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC-C
Q 046018          124 SILSGDKTGRLLKYEK--TTK----EVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-P  196 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~--~~~----~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~  196 (310)
                            +.+.|..++.  ..+    +.............++++.||+++-+. +.++.|.+|+...-  .....+... .
T Consensus       254 ------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~~l--q~~~~vk~aH~  324 (398)
T KOG0771|consen  254 ------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG-TMDGSVAIYDAKSL--QRLQYVKEAHL  324 (398)
T ss_pred             ------CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe-ccCCcEEEEEecee--eeeEeehhhhe
Confidence                  2333333332  111    122222334456789999999966555 77899999985421  111111111 1


Q ss_pred             CCCCeeEECCCCCEEEEEecCC
Q 046018          197 GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       197 ~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      +...++.+.|+-+--.....++
T Consensus       325 ~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  325 GFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             eeeeeEEEcCCcCcccccccCC
Confidence            3456777777765555444433

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=93.59  E-value=4.7  Score=35.34  Aligned_cols=138  Identities=17%  Similarity=0.134  Sum_probs=78.8

Q ss_pred             eEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           51 GIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      .+.+.| .-.|.+.... ..|..+|..++++..-..   +- .....+|+++..|+ ..++-+..               
T Consensus       113 ~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~Lr---GH-t~sv~di~~~a~Gk-~l~tcSsD---------------  171 (406)
T KOG0295|consen  113 RVIFHP-SEALVVSASEDATIKVFDTETGELERSLR---GH-TDSVFDISFDASGK-YLATCSSD---------------  171 (406)
T ss_pred             eeeecc-CceEEEEecCCceEEEEEccchhhhhhhh---cc-ccceeEEEEecCcc-EEEecCCc---------------
Confidence            455666 4344444333 348889998887632222   21 12478999999998 66665431               


Q ss_pred             CCceEEEEeCCCCeEEE---EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC---CCCeeE
Q 046018          130 KTGRLLKYEKTTKEVTI---LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG---FPDNVR  203 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~---~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~  203 (310)
                        =.+..||.++- ++.   +.........+++-|-|.++. +.+.++.|..|+.+.+     ..+..+++   .-.-+.
T Consensus       172 --l~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg-----~cv~t~~~h~ewvr~v~  242 (406)
T KOG0295|consen  172 --LSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTG-----YCVKTFPGHSEWVRMVR  242 (406)
T ss_pred             --cchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeee-ecccccceeEEecccc-----eeEEeccCchHhEEEEE
Confidence              12555665431 111   111122345677888777544 4467789999988753     11222222   335678


Q ss_pred             ECCCCCEEEEEecCC
Q 046018          204 SNSNGEFWVALHAKK  218 (310)
Q Consensus       204 ~d~~G~l~va~~~~~  218 (310)
                      +..||.|..+.....
T Consensus       243 v~~DGti~As~s~dq  257 (406)
T KOG0295|consen  243 VNQDGTIIASCSNDQ  257 (406)
T ss_pred             ecCCeeEEEecCCCc
Confidence            888898877665444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=93.54  E-value=1  Score=41.27  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=46.6

Q ss_pred             cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-c
Q 046018          152 AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-W  230 (310)
Q Consensus       152 ~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~  230 (310)
                      ..+|.++++|||++|-.. +..+.|.+|+.+...+  .......-+.--.+++++||.+.+.. +..++    +..++ .
T Consensus       291 g~in~f~FS~DG~~LA~V-SqDGfLRvF~fdt~eL--lg~mkSYFGGLLCvcWSPDGKyIvtG-GEDDL----VtVwSf~  362 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATV-SQDGFLRIFDFDTQEL--LGVMKSYFGGLLCVCWSPDGKYIVTG-GEDDL----VTVWSFE  362 (636)
T ss_pred             ccccceeEcCCCceEEEE-ecCceEEEeeccHHHH--HHHHHhhccceEEEEEcCCccEEEec-CCcce----EEEEEec
Confidence            368999999999987665 4568999998874311  01111111223467899999765543 33333    44444 3


Q ss_pred             cccEEee
Q 046018          231 LGKTLLK  237 (310)
Q Consensus       231 ~g~~~~~  237 (310)
                      +++.+.+
T Consensus       363 erRVVAR  369 (636)
T KOG2394|consen  363 ERRVVAR  369 (636)
T ss_pred             cceEEEe
Confidence            5555554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=93.53  E-value=7.9  Score=37.71  Aligned_cols=148  Identities=10%  Similarity=0.111  Sum_probs=79.6

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCcccc-CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLR-FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      |.-|...+ .|+.....+..+++.++...+. +............ .....+++|.++ ..++..               
T Consensus       163 ~~~I~~~~-~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d---------------  224 (792)
T KOG1963|consen  163 PKSIVDNN-SGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNER-YLAAGD---------------  224 (792)
T ss_pred             CccEEEcC-CceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccc-eEEEec---------------
Confidence            44455555 5555544444455555433322 1221111111000 145678899998 333322               


Q ss_pred             CCCCceEEEEeCCC-----CeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          128 GDKTGRLLKYEKTT-----KEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       128 ~~~~g~v~~~d~~~-----~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                        .+|+|..|.--.     -..+.+.=....-+++++++||..||-. -.++-+.+|..+.+   +++.+..+....-.+
T Consensus       225 --~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG-G~E~VLv~Wq~~T~---~kqfLPRLgs~I~~i  298 (792)
T KOG1963|consen  225 --SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG-GREGVLVLWQLETG---KKQFLPRLGSPILHI  298 (792)
T ss_pred             --cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeec-ccceEEEEEeecCC---CcccccccCCeeEEE
Confidence              378888875321     1122221112346899999999877644 45566666665533   223332243334788


Q ss_pred             EECCCCCEEEEEecCCcc
Q 046018          203 RSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~~  220 (310)
                      .+.+|+++|......+++
T Consensus       299 ~vS~ds~~~sl~~~DNqI  316 (792)
T KOG1963|consen  299 VVSPDSDLYSLVLEDNQI  316 (792)
T ss_pred             EEcCCCCeEEEEecCceE
Confidence            999999999887777763

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.35  E-value=3.4  Score=35.57  Aligned_cols=65  Identities=18%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC-CCcc-eeeeeC--------CCCCCeeEECCCCCEEEE
Q 046018          148 LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN-SGKQ-DVFAEL--------PGFPDNVRSNSNGEFWVA  213 (310)
Q Consensus       148 ~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~-~~~~-~~~~~~--------~~~p~~i~~d~~G~l~va  213 (310)
                      ...+..|-||+++|.+- +||++..++....|+.+... .+.. .+....        +..|.++.+.....+-|.
T Consensus        19 Dp~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt   93 (336)
T TIGR03118        19 DPGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVS   93 (336)
T ss_pred             CccccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEc
Confidence            45577899999999774 99999999999999876221 1111 111121        246888888755444343

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.29  E-value=0.31  Score=28.12  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=26.6

Q ss_pred             cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC
Q 046018           91 PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT  141 (310)
Q Consensus        91 ~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  141 (310)
                      ....|+++++|+.++++|+++..                 ...+.+++.++
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~-----------------~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWG-----------------LDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCC-----------------CCEEEEEeCCC
Confidence            34579999999998889999965                 46677777653

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=93.26  E-value=0.99  Score=38.62  Aligned_cols=111  Identities=12%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             ceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEe-ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           50 LGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVT-EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        50 ~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~-~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ..|.+.| .|+ |.+++...-+..+|.++.+.  +.. .+...-...++++-.++.|+ ||++.+.              
T Consensus       220 rsiSfHP-sGefllvgTdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~-lYvTaSk--------------  281 (430)
T KOG0640|consen  220 RSISFHP-SGEFLLVGTDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGS-LYVTASK--------------  281 (430)
T ss_pred             eeEeecC-CCceEEEecCCCceeEEeccceeE--eeecCcccccccceeEEEecCCcc-EEEEecc--------------
Confidence            3788999 665 45554443345557776553  222 22222223577888999999 9999864              


Q ss_pred             CCCCceEEEEeCCCCeEEE-Ee--cCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          128 GDKTGRLLKYEKTTKEVTI-LL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~-~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                         +|.|-.||.-++++.. +.  .+....-...|++++++++-+ -....+..|.+.
T Consensus       282 ---DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-G~DS~vkLWEi~  335 (430)
T KOG0640|consen  282 ---DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS-GKDSTVKLWEIS  335 (430)
T ss_pred             ---CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec-CCcceeeeeeec
Confidence               8889999976665533 21  233334456788888854433 344566666654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=93.20  E-value=4.9  Score=34.36  Aligned_cols=88  Identities=16%  Similarity=0.100  Sum_probs=57.6

Q ss_pred             ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC---CCCCCeeEECCCCCEEEEEecCCccceeeeeecc
Q 046018          153 FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL---PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS  229 (310)
Q Consensus       153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~  229 (310)
                      ..+-+.|+|||. ++++....+.|+.|+..+..    +-+..+   .+...++...+||+..+++.....+    ...+.
T Consensus        49 eI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdc----eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v----~~wD~  119 (338)
T KOG0265|consen   49 EIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDC----ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV----RGWDA  119 (338)
T ss_pred             eEEEEEECCCCC-eEeecCCcceEEEEeccccc----cceeeeccccceeEeeeeccCCCEEEEecCCceE----EEEec
Confidence            356789999987 77777788999999876431    111111   1233556778889888887766653    44456


Q ss_pred             ccccEEeeccchhhhhcccc
Q 046018          230 WLGKTLLKLPLSFRQLHSLL  249 (310)
Q Consensus       230 ~~g~~~~~~~~~~~~~~~~~  249 (310)
                      .+|+.+.+........+.+.
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~  139 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLD  139 (338)
T ss_pred             ccceeeehhccccceeeecC
Confidence            78888777665554444444

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.14  E-value=1  Score=40.17  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018           70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ  149 (310)
Q Consensus        70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  149 (310)
                      ++.+|.++++.+.+...     .........+|+|+.+.+..                   .+.|+..+..++....+..
T Consensus        25 y~i~d~~~~~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~-------------------~~nly~~~~~~~~~~~lT~   80 (353)
T PF00930_consen   25 YYIYDIETGEITPLTPP-----PPKLQDAKWSPDGKYIAFVR-------------------DNNLYLRDLATGQETQLTT   80 (353)
T ss_dssp             EEEEETTTTEEEESS-E-----ETTBSEEEE-SSSTEEEEEE-------------------TTEEEEESSTTSEEEESES
T ss_pred             EEEEecCCCceEECcCC-----ccccccceeecCCCeeEEEe-------------------cCceEEEECCCCCeEEecc
Confidence            67778888877665332     22456778888888666654                   5567777766665444432


Q ss_pred             C------------------CcccceEEEecCCCeEEEEecCCceEEEE
Q 046018          150 G------------------LAFANGVALSRDRTFILIAETSNCRILRF  179 (310)
Q Consensus       150 ~------------------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~  179 (310)
                      +                  +....++.++||+++|.+.......|..+
T Consensus        81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence            2                  33457889999999886665554444444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.04  E-value=0.59  Score=45.76  Aligned_cols=100  Identities=16%  Similarity=0.167  Sum_probs=67.4

Q ss_pred             cEEEEECCCceEEEeCCCCeEEEEEee-c-CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           60 DLYIADAYLGFQVVGPEGGLATQLVTE-A-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        60 ~l~v~~~~~gi~~~d~~~~~~~~~~~~-~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      ..|++-...+++++||+-..- .+... . .=.......+++-+.+|+ |.|++                  ..|.|..|
T Consensus       544 ~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavgs------------------~~G~IRLy  603 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSSKNNFSCFATTEDGY-IAVGS------------------NKGDIRLY  603 (794)
T ss_pred             ceEEEECCCceEEeccCCCCC-ceeeccccccccCCCceEEEecCCce-EEEEe------------------CCCcEEee
Confidence            567887777899999875321 12211 1 001223456788889998 88887                  47888889


Q ss_pred             eCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEc
Q 046018          138 EKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWL  181 (310)
Q Consensus       138 d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~  181 (310)
                      |.-+.++++..++++.| -||.++.||++++.+  -...|..++.
T Consensus       604 d~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t  646 (794)
T PF08553_consen  604 DRLGKRAKTALPGLGDPIIGIDVTADGKWILAT--CKTYLLLIDT  646 (794)
T ss_pred             cccchhhhhcCCCCCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence            87666666666776665 699999999976654  3357777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=93.03  E-value=1.4  Score=40.91  Aligned_cols=111  Identities=8%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             ceeceEEEeCCCC-cEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTG-DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g-~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+.++. +| .+-|++..+.++.+|.++.+...+-+.....++....-+-- .+++.++-.+              
T Consensus       229 ~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-~~q~~v~S~D--------------  292 (703)
T KOG2321|consen  229 PSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT-DQQNKVVSMD--------------  292 (703)
T ss_pred             CcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc-CCCceEEecc--------------
Confidence            4577888876 55 34455444558888888765322222222222221111111 2233244333              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRF  179 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~  179 (310)
                           ...+-.||..+|+.....+....-|.+++-|++..++.+.. +..+..|
T Consensus       293 -----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~y  340 (703)
T KOG2321|consen  293 -----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTY  340 (703)
T ss_pred             -----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeE
Confidence                 33455688888876665555666899999999986666644 4444444

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.97  E-value=0.69  Score=31.86  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=26.7

Q ss_pred             ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCC
Q 046018           69 GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSS  113 (310)
Q Consensus        69 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~  113 (310)
                      .|..+|++  +.+..+.     ....||+|+.+|++++|||++..
T Consensus        37 ~Vvyyd~~--~~~~va~-----g~~~aNGI~~s~~~k~lyVa~~~   74 (86)
T PF01731_consen   37 NVVYYDGK--EVKVVAS-----GFSFANGIAISPDKKYLYVASSL   74 (86)
T ss_pred             eEEEEeCC--EeEEeec-----cCCCCceEEEcCCCCEEEEEecc
Confidence            36666764  3333322     35689999999999999999854

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PHA03098 kelch-like protein; Provisional

Probab=92.95  E-value=4.5  Score=38.20  Aligned_cols=109  Identities=11%  Similarity=0.066  Sum_probs=57.9

Q ss_pred             CCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           58 TGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        58 ~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      +++||+....       ..+.++|+.+.+.+.+...+    ......-++.-++. ||+.........         ...
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p----~~r~~~~~~~~~~~-iyv~GG~~~~~~---------~~~  454 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP----ISHYGGCAIYHDGK-IYVIGGISYIDN---------IKV  454 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC----ccccCceEEEECCE-EEEECCccCCCC---------Ccc
Confidence            5789997552       23788999988766543221    11112223334566 888752210000         001


Q ss_pred             CceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC-----CceEEEEEccC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS-----NCRILRFWLHG  183 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~  183 (310)
                      ...+++||+++++++.+.. ...|   .+++.. +++ +|+..-.     .+.|++||++.
T Consensus       455 ~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        455 YNIVESYNPVTNKWTELSS-LNFPRINASLCIF-NNK-IYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             cceEEEecCCCCceeeCCC-CCcccccceEEEE-CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence            2348999999988876542 2222   223322 444 7775422     24678887663

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=92.84  E-value=5.2  Score=40.46  Aligned_cols=148  Identities=18%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      -.+.++++|...+.+|.++.... +.+.+.++.....++..    .+..|..++++|....+|+++....          
T Consensus       480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~~----------  545 (877)
T KOG1215|consen  480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSK----DLDLPRSIAVDPEKGLMFWTDWGQP----------  545 (877)
T ss_pred             cccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEec----CCCCccceeeccccCeeEEecCCCC----------
Confidence            56889999988889999998743 66666555442223222    1246889999998776888885521          


Q ss_pred             hcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCc-eEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNC-RILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                           . ++.+-..+...... +..+...|+|++++--.+.+|+++.... .|...+.++.+..  .........|..+.
T Consensus       546 -----~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~--~~~~~~~~~p~~~~  617 (877)
T KOG1215|consen  546 -----P-RIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR--VVDSEDLPHPFGLS  617 (877)
T ss_pred             -----c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE--EeccccCCCceEEE
Confidence                 1 34444443323332 3344678999999988888999998887 7888888765221  11112223566666


Q ss_pred             ECCCCCEEEEEecC
Q 046018          204 SNSNGEFWVALHAK  217 (310)
Q Consensus       204 ~d~~G~l~va~~~~  217 (310)
                      +-. +.+|-..+..
T Consensus       618 ~~~-~~iyw~d~~~  630 (877)
T KOG1215|consen  618 VFE-DYIYWTDWSN  630 (877)
T ss_pred             Eec-ceeEEeeccc
Confidence            643 3455444443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=92.84  E-value=2.4  Score=36.74  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             CCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCC
Q 046018          130 KTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSN  207 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~  207 (310)
                      +.+.|..|+..-.+... +..+...-..+.++|||++++.+...+-+|.+|.+.++.    ..... ......++++.+|
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLLPHPKTNVKGYAFHPD  144 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEecccccCceeEEECCC
Confidence            36678888765334333 334444456789999999888888888999999887531    11112 1122378999999


Q ss_pred             CCEEEEE
Q 046018          208 GEFWVAL  214 (310)
Q Consensus       208 G~l~va~  214 (310)
                      |++-.-.
T Consensus       145 g~f~ai~  151 (447)
T KOG4497|consen  145 GQFCAIL  151 (447)
T ss_pred             Cceeeee
Confidence            9764433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.82  E-value=5.6  Score=34.05  Aligned_cols=139  Identities=14%  Similarity=0.162  Sum_probs=76.2

Q ss_pred             ccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEE
Q 046018            4 TGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQ   82 (310)
Q Consensus         4 ~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~   82 (310)
                      .+.+|+.|++|.....+ .+.                .......+-+..++++.+...+|.+.-...+-.+|..+++..+
T Consensus        45 A~SWD~tVR~wevq~~g~~~~----------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~  108 (347)
T KOG0647|consen   45 AGSWDGTVRIWEVQNSGQLVP----------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ  108 (347)
T ss_pred             ecccCCceEEEEEecCCcccc----------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence            56788889999875532 110                1111222445578888744467777666668888999988776


Q ss_pred             EEeecCCccccCCcceEEeCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccc-eEEEe
Q 046018           83 LVTEAAGQPLRFTNDLDIDEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFAN-GVALS  160 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~-gi~~~  160 (310)
                      +....  .+.   ..+.+-+. ...+.+|.+                 .+..|-.||......  +. .+.-|. ..+.+
T Consensus       109 v~~Hd--~pv---kt~~wv~~~~~~cl~TGS-----------------WDKTlKfWD~R~~~p--v~-t~~LPeRvYa~D  163 (347)
T KOG0647|consen  109 VAAHD--APV---KTCHWVPGMNYQCLVTGS-----------------WDKTLKFWDTRSSNP--VA-TLQLPERVYAAD  163 (347)
T ss_pred             eeecc--cce---eEEEEecCCCcceeEecc-----------------cccceeecccCCCCe--ee-eeeccceeeehh
Confidence            65432  111   12222111 111445543                 267788888753211  11 122343 23333


Q ss_pred             cCCCeEEEEecCCceEEEEEccCC
Q 046018          161 RDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       161 ~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      -..- |.+..+.++.|-+|++.++
T Consensus       164 v~~p-m~vVata~r~i~vynL~n~  186 (347)
T KOG0647|consen  164 VLYP-MAVVATAERHIAVYNLENP  186 (347)
T ss_pred             ccCc-eeEEEecCCcEEEEEcCCC
Confidence            3344 4454578899999998754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=92.71  E-value=4.7  Score=39.15  Aligned_cols=69  Identities=14%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETS  172 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~  172 (310)
                      ..++++++++|.+||-+.                  ..+-+.+|..++++ +.+.+.++.| -+++++||+. +|..-..
T Consensus       253 ~V~~L~fS~~G~~LlSGG------------------~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~  312 (792)
T KOG1963|consen  253 EVNSLSFSSDGAYLLSGG------------------REGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLE  312 (792)
T ss_pred             ccceeEEecCCceEeecc------------------cceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEec
Confidence            478899999998566443                  36667889888887 5566666665 7999999998 6665567


Q ss_pred             CceEEEEEcc
Q 046018          173 NCRILRFWLH  182 (310)
Q Consensus       173 ~~~i~~~~~~  182 (310)
                      +++|..+...
T Consensus       313 DNqI~li~~~  322 (792)
T KOG1963|consen  313 DNQIHLIKAS  322 (792)
T ss_pred             CceEEEEecc
Confidence            7899988763

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=92.68  E-value=0.17  Score=25.56  Aligned_cols=20  Identities=10%  Similarity=0.152  Sum_probs=16.0

Q ss_pred             cccCCcceEEeCCCCEEEEEe
Q 046018           91 PLRFTNDLDIDEHKGVIYFTD  111 (310)
Q Consensus        91 ~~~~~~~i~~d~~g~~l~v~~  111 (310)
                      +...+.+|..|++|+ ||+++
T Consensus         3 ~~n~I~~i~~D~~G~-lWigT   22 (24)
T PF07494_consen    3 PNNNIYSIYEDSDGN-LWIGT   22 (24)
T ss_dssp             SSSCEEEEEE-TTSC-EEEEE
T ss_pred             CCCeEEEEEEcCCcC-EEEEe
Confidence            345678999999999 99997

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=92.66  E-value=3.7  Score=37.96  Aligned_cols=113  Identities=15%  Similarity=0.197  Sum_probs=68.8

Q ss_pred             ceeceEEEeCCCCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      +-.|.+.+++ +++=|.+..+   ..+..+|.+..-   +.+.+.++    =|.+.+.|.|+.|.++.-+          
T Consensus       271 GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~---v~df~egp----RN~~~fnp~g~ii~lAGFG----------  332 (566)
T KOG2315|consen  271 GPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKP---VFDFPEGP----RNTAFFNPHGNIILLAGFG----------  332 (566)
T ss_pred             CCceEEEECC-CCCEEEEEEecccceEEEEcCCCCE---eEeCCCCC----ccceEECCCCCEEEEeecC----------
Confidence            4566788888 6654444433   458888887553   23332222    3678899999966666633          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC-----CceEEEEEccC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS-----NCRILRFWLHG  183 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~  183 (310)
                           ...|.+-.||..+.+. +.........-..|+|||++++.+.+.     ++++.+|+..|
T Consensus       333 -----NL~G~mEvwDv~n~K~-i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  333 -----NLPGDMEVWDVPNRKL-IAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             -----CCCCceEEEeccchhh-ccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence                 3477888899875221 111122334567899999988777543     34555555544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=92.58  E-value=4.3  Score=35.40  Aligned_cols=160  Identities=13%  Similarity=0.098  Sum_probs=84.4

Q ss_pred             EEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           52 IRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        52 l~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      |+++= +.++.|...... |..+|.++++.....-...+    ..-++.+. + . +.|+-+.                 
T Consensus       241 LCLqy-d~rviisGSSDsTvrvWDv~tge~l~tlihHce----aVLhlrf~-n-g-~mvtcSk-----------------  295 (499)
T KOG0281|consen  241 LCLQY-DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE----AVLHLRFS-N-G-YMVTCSK-----------------  295 (499)
T ss_pred             Eeeec-cceEEEecCCCceEEEEeccCCchhhHHhhhcc----eeEEEEEe-C-C-EEEEecC-----------------
Confidence            44554 556777766644 77889988865321110001    12233333 2 2 4455432                 


Q ss_pred             CceEEEEeCCCCeEEE---EecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018          131 TGRLLKYEKTTKEVTI---LLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS  206 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~---~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  206 (310)
                      +-.+..||........   +..+ ....|-+.+  |.+ ++|+.++.+.|.+|+..+.     +.+..+.+.-.||+.-.
T Consensus       296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~k-yIVsASgDRTikvW~~st~-----efvRtl~gHkRGIAClQ  367 (499)
T KOG0281|consen  296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWSTSTC-----EFVRTLNGHKRGIACLQ  367 (499)
T ss_pred             CceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccc-eEEEecCCceEEEEeccce-----eeehhhhcccccceehh
Confidence            4456667665432211   1111 122344444  455 6777789999999997632     33333445567776543


Q ss_pred             -CCCEEEEEecCCccceeeeeec-cccccEEeeccchhhhhcccc
Q 046018          207 -NGEFWVALHAKKGLFGKLILLN-SWLGKTLLKLPLSFRQLHSLL  249 (310)
Q Consensus       207 -~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~~~~  249 (310)
                       .|++.|+..+.+.     |..+ -.-|..+..+....+...++-
T Consensus       368 Yr~rlvVSGSSDnt-----IRlwdi~~G~cLRvLeGHEeLvRciR  407 (499)
T KOG0281|consen  368 YRDRLVVSGSSDNT-----IRLWDIECGACLRVLEGHEELVRCIR  407 (499)
T ss_pred             ccCeEEEecCCCce-----EEEEeccccHHHHHHhchHHhhhhee
Confidence             4678787766664     3333 345666655555555444443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.31  E-value=6.1  Score=37.35  Aligned_cols=117  Identities=15%  Similarity=0.097  Sum_probs=70.5

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEee-------cCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTE-------AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~-------~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      ....-|+.-.++..+.+...- +.|+.+|.+++..+.+...       ....+......+|..+.|. ++++..      
T Consensus       118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGg------  190 (735)
T KOG0308|consen  118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGG------  190 (735)
T ss_pred             chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecC------
Confidence            344556663326666665444 4599999887633211111       1112333566777777776 777653      


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                                 ..+-+..||+.+++..+ +..--.....+.+++||.+++-+ +..+.|..||+.
T Consensus       191 -----------tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~-sSDgtIrlWdLg  243 (735)
T KOG0308|consen  191 -----------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA-SSDGTIRLWDLG  243 (735)
T ss_pred             -----------cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec-CCCceEEeeecc
Confidence                       25568889998764433 32222335678899999876655 667899999875

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=92.26  E-value=4.3  Score=35.29  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL  148 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  148 (310)
                      .+|+|..+++|+ +.|+...                 ...|+++++++|++....
T Consensus       145 HiNsV~~~~~G~-yLiS~R~-----------------~~~i~~I~~~tG~I~W~l  181 (299)
T PF14269_consen  145 HINSVDKDDDGD-YLISSRN-----------------TSTIYKIDPSTGKIIWRL  181 (299)
T ss_pred             EeeeeeecCCcc-EEEEecc-----------------cCEEEEEECCCCcEEEEe
Confidence            478899999999 7777643                 567999999998887654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.23  E-value=4  Score=36.07  Aligned_cols=111  Identities=10%  Similarity=0.060  Sum_probs=67.5

Q ss_pred             eEEEeCC-CCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           51 GIRFDKK-TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        51 gl~~d~~-~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      ++.+-++ ..+-+++-.. +.+..+|+..++ +++....  ..-+....+...|+|++||+++.                
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd--~~E~~is~~~l~p~gn~Iy~gn~----------------  267 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFD--FLENPISSTGLTPSGNFIYTGNT----------------  267 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccC-cceeEec--cccCcceeeeecCCCcEEEEecc----------------
Confidence            4444441 1344444333 457777888654 3443332  11234678889999998998883                


Q ss_pred             CCCceEEEEeCCCCeEEEE-ecC-CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          129 DKTGRLLKYEKTTKEVTIL-LQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~-~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                        .|.+..||..+++.-.. ..+ -+.+..|...|.+. ++.+-.-.+-|.++|.+.
T Consensus       268 --~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  268 --KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             --cchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence              67788999876654432 222 24477888888776 444434566777888764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.22  E-value=8.4  Score=34.66  Aligned_cols=53  Identities=4%  Similarity=-0.085  Sum_probs=42.2

Q ss_pred             CCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          130 KTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                      .+.+|..||.++++...... .....+.+.|.|..-..+++.+..++|..+|.+
T Consensus       264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            47789999999998776443 445578899999766677788899999999876

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=92.03  E-value=2.4  Score=38.68  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCccc-ceEEEecCCCeEEEEecC
Q 046018           95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFA-NGVALSRDRTFILIAETS  172 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~-~gi~~~~d~~~lyv~~~~  172 (310)
                      ..+|++.|....|+++..                 .+.+|+.||....+... +.  ...| ..++|.++|-+|. +.+.
T Consensus       211 ~~gicfspsne~l~vsVG-----------------~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~-aG~s  270 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVG-----------------YDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLC-AGNS  270 (673)
T ss_pred             cCcceecCCccceEEEec-----------------ccceEEEeecccccccceee--ecCCcceeeecCCceEEE-eecC
Confidence            468999998884666552                 26689999975443321 22  2223 5789999997555 4567


Q ss_pred             CceEEEEEccCC
Q 046018          173 NCRILRFWLHGP  184 (310)
Q Consensus       173 ~~~i~~~~~~~~  184 (310)
                      .++|+.||+.+.
T Consensus       271 ~G~~i~YD~R~~  282 (673)
T KOG4378|consen  271 KGELIAYDMRST  282 (673)
T ss_pred             CceEEEEecccC
Confidence            799999999864

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=91.95  E-value=1.4  Score=36.39  Aligned_cols=110  Identities=17%  Similarity=0.076  Sum_probs=56.1

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEe----ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVT----EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~----~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .|.+++ .|-||..+....+++..+-+........    ...+..-+....|..+++|- ||+-+.              
T Consensus        85 ~i~~d~-~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~--------------  148 (229)
T PF14517_consen   85 FIFFDP-TGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITP--------------  148 (229)
T ss_dssp             EEEE-T-TS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET--------------
T ss_pred             EEEecC-CccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcC--------------
Confidence            688898 9999999887568777443221111111    11012233456788899998 998773              


Q ss_pred             cCCCCceEEEE-eCCCCeEE-----EE--ecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          127 SGDKTGRLLKY-EKTTKEVT-----IL--LQGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       127 ~~~~~g~v~~~-d~~~~~~~-----~~--~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                          ++.+++. .++.+.-.     .+  ...-....-|.++|++. ||.+ -.++.||+..+.
T Consensus       149 ----dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~~p  206 (229)
T PF14517_consen  149 ----DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGRPP  206 (229)
T ss_dssp             ----TE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES--
T ss_pred             ----CCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccCCc
Confidence                5667766 44333111     11  12223367799999987 8887 456899887543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=91.40  E-value=0.64  Score=42.59  Aligned_cols=70  Identities=14%  Similarity=0.142  Sum_probs=44.5

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETS  172 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~  172 (310)
                      .+|.+++++||+ ...+.+.                 +|.+..||-++.++.-+... ...--.++|+|||++ +++.-.
T Consensus       292 ~in~f~FS~DG~-~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGE  352 (636)
T KOG2394|consen  292 SINEFAFSPDGK-YLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKY-IVTGGE  352 (636)
T ss_pred             cccceeEcCCCc-eEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccE-EEecCC
Confidence            689999999999 5555543                 67777777654332211111 223357899999994 444455


Q ss_pred             CceEEEEEcc
Q 046018          173 NCRILRFWLH  182 (310)
Q Consensus       173 ~~~i~~~~~~  182 (310)
                      ++-|.+|.+.
T Consensus       353 DDLVtVwSf~  362 (636)
T KOG2394|consen  353 DDLVTVWSFE  362 (636)
T ss_pred             cceEEEEEec
Confidence            6777777754

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=91.31  E-value=7.3  Score=37.60  Aligned_cols=119  Identities=8%  Similarity=0.040  Sum_probs=71.1

Q ss_pred             cccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           44 HICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        44 ~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      +.....+-+.+++-.-.+.+...++| |=.+|.+..+-+.....    -...++|+++.|.-...+++..          
T Consensus       131 EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----nSESiRDV~fsp~~~~~F~s~~----------  196 (839)
T KOG0269|consen  131 EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----NSESIRDVKFSPGYGNKFASIH----------  196 (839)
T ss_pred             hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----cchhhhceeeccCCCceEEEec----------
Confidence            33356677888875668888888877 55567765543322111    1236889999875442555543          


Q ss_pred             hhhhcCCCCceEEEEeCCC-CeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          123 SSILSGDKTGRLLKYEKTT-KEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~-~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                             ..|.|..||..- .+++...... +..-.+-+.|++. .+.+....+.|-+|++.+.
T Consensus       197 -------dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  197 -------DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             -------CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCC
Confidence                   378899999731 1122111112 2235677899655 4445456678999998754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.31  E-value=12  Score=34.77  Aligned_cols=122  Identities=8%  Similarity=0.085  Sum_probs=76.5

Q ss_pred             ccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC-CCEEEEEeCCCchhh
Q 046018           41 DIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH-KGVIYFTDSSTSFQR  118 (310)
Q Consensus        41 ~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-g~~l~v~~~~~~~~~  118 (310)
                      .+....++..-|++.. +|.+.+.... ..+.++|+-..++.+.+..  + -...+..+.+-|. ++++.++..+     
T Consensus        45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--g-HtaNIFsvKFvP~tnnriv~sgAg-----  115 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST--G-HTANIFSVKFVPYTNNRIVLSGAG-----  115 (758)
T ss_pred             hhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec--c-cccceeEEeeeccCCCeEEEeccC-----
Confidence            3445568899999999 9998888766 4688899876665444332  1 1123445555553 4447777644     


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-----------CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-----------LAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                                  +..|..+|.+.-+-.-...+           .....-|+..|++-..+|+.+..+.|..||+..
T Consensus       116 ------------Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  116 ------------DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             ------------cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence                        55688888753111000000           112346888888755777778889999999875

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=90.76  E-value=10  Score=32.90  Aligned_cols=34  Identities=18%  Similarity=0.171  Sum_probs=26.2

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEE
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLAT   81 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~   81 (310)
                      -+...+..++ +|.++|.... ..|++++++++++.
T Consensus       144 ~HiNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~  178 (299)
T PF14269_consen  144 FHINSVDKDD-DGDYLISSRNTSTIYKIDPSTGKII  178 (299)
T ss_pred             cEeeeeeecC-CccEEEEecccCEEEEEECCCCcEE
Confidence            3566888887 8888887766 45999999988753

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=90.22  E-value=4.4  Score=35.73  Aligned_cols=112  Identities=12%  Similarity=0.114  Sum_probs=79.7

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ....+.+++ .+.+|-+.-.+-|.++|..++....-..  .+   ...++|...+..+ |.++.+.              
T Consensus       262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~---ksl~~i~~~~~~~-Ll~~gss--------------  320 (423)
T KOG0313|consen  262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TN---KSLNCISYSPLSK-LLASGSS--------------  320 (423)
T ss_pred             ceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cC---cceeEeecccccc-eeeecCC--------------
Confidence            344777777 7788888777889999998876532211  11   2467888889888 7777644              


Q ss_pred             CCCCceEEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          128 GDKTGRLLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                         +..+..|||.++.-..+.    .-.....++.++|...+++++.+..+.+..||.+.
T Consensus       321 ---dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  321 ---DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             ---CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence               445778898766433222    12234678999999999999999999999999874

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.10  E-value=12  Score=32.68  Aligned_cols=74  Identities=11%  Similarity=0.052  Sum_probs=44.0

Q ss_pred             CCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018           58 TGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT  131 (310)
Q Consensus        58 ~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (310)
                      +++|||....      ..++++|+.+.+.+.+...+..   ......++.-+++ ||+..-...             ...
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---~r~~~~~~~~~~~-iYv~GG~~~-------------~~~  185 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE---PRVQPVCVKLQNE-LYVFGGGSN-------------IAY  185 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC---CCCcceEEEECCE-EEEEcCCCC-------------ccc
Confidence            5789988653      2388999998876654322111   1223344455676 998753210             011


Q ss_pred             ceEEEEeCCCCeEEEEe
Q 046018          132 GRLLKYEKTTKEVTILL  148 (310)
Q Consensus       132 g~v~~~d~~~~~~~~~~  148 (310)
                      ..+++||+++.+++.+.
T Consensus       186 ~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       186 TDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             cceEEEecCCCeeEECC
Confidence            23689999988887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.06  E-value=16  Score=34.01  Aligned_cols=100  Identities=17%  Similarity=0.215  Sum_probs=63.4

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      -+.||-+.....+..+++.......+....+    ..+..+++.|||. +..+.                   ...|..|
T Consensus       114 ~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~----~~~~sl~is~D~~-~l~~a-------------------s~~ik~~  169 (541)
T KOG4547|consen  114 LGCIYSVGADLKVVYILEKEKVIIRIWKEQK----PLVSSLCISPDGK-ILLTA-------------------SRQIKVL  169 (541)
T ss_pred             cCceEecCCceeEEEEecccceeeeeeccCC----CccceEEEcCCCC-EEEec-------------------cceEEEE
Confidence            4566666555458888888776555544321    2467899999999 66654                   4568899


Q ss_pred             eCCCCeEEEEecCCccc-ceEEEecC-----CCeEEEEecCCceEEEEEc
Q 046018          138 EKTTKEVTILLQGLAFA-NGVALSRD-----RTFILIAETSNCRILRFWL  181 (310)
Q Consensus       138 d~~~~~~~~~~~~~~~~-~gi~~~~d-----~~~lyv~~~~~~~i~~~~~  181 (310)
                      |.++++...-.++...| +.+++..+     |++++-+...+..+..+-.
T Consensus       170 ~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  170 DIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             EccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            99888877666666554 55666554     5555544444444444433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=89.95  E-value=6.5  Score=38.78  Aligned_cols=144  Identities=11%  Similarity=0.112  Sum_probs=78.6

Q ss_pred             eceEEEeCCCCcEEEEECC--CceEEEeCCCCeEEEEEeecCCccccCCcceEEeC------CCCEEEEEeCCCchhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAY--LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE------HKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~------~g~~l~v~~~~~~~~~~~  120 (310)
                      |.-+.+...+..+.+.+..  ..|+++|.+.|++..-.+.....+   +.+++-+.      ... .+++-         
T Consensus       483 P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~---v~~~~p~~K~aqlt~e~-tflGl---------  549 (794)
T PF08553_consen  483 PKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP---VVDIAPDSKFAQLTNEQ-TFLGL---------  549 (794)
T ss_pred             cchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc---eeEecccccccccCCCc-eEEEE---------
Confidence            4444444435566666553  469999999988654333221111   23333221      122 34443         


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCeEEEEec------CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKEVTILLQ------GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE  194 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (310)
                               ....|+++||.-..-+.+..      ....=.+++-+.+|. +.|+ +..|.|..||.-+.+  ....+..
T Consensus       550 ---------s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavg-s~~G~IRLyd~~g~~--AKT~lp~  616 (794)
T PF08553_consen  550 ---------SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY-IAVG-SNKGDIRLYDRLGKR--AKTALPG  616 (794)
T ss_pred             ---------CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCce-EEEE-eCCCcEEeecccchh--hhhcCCC
Confidence                     25679999974322111111      111124677777775 6666 667899999854421  1122222


Q ss_pred             CCCCCCeeEECCCCCEEEEEecCC
Q 046018          195 LPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       195 ~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      +..-.-+|.+..||+..+|+-..-
T Consensus       617 lG~pI~~iDvt~DGkwilaTc~ty  640 (794)
T PF08553_consen  617 LGDPIIGIDVTADGKWILATCKTY  640 (794)
T ss_pred             CCCCeeEEEecCCCcEEEEeecce
Confidence            222236899999998888876654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=89.65  E-value=3.9  Score=34.33  Aligned_cols=69  Identities=25%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE-EEEecCCcccceEEEecCCCeEEEEecC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV-TILLQGLAFANGVALSRDRTFILIAETS  172 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~~~gi~~~~d~~~lyv~~~~  172 (310)
                      ..+++.+-||++ |+.+..   |              ++++..|.-.+... .++...-...|.++|+||-. |..+.+.
T Consensus       253 Gv~gvrIRpD~K-IlATAG---W--------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaask  313 (323)
T KOG0322|consen  253 GVSGVRIRPDGK-ILATAG---W--------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASK  313 (323)
T ss_pred             CccceEEccCCc-EEeecc---c--------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccC
Confidence            567899999999 887752   2              55555554433322 22222235578999999966 6666678


Q ss_pred             CceEEEEEc
Q 046018          173 NCRILRFWL  181 (310)
Q Consensus       173 ~~~i~~~~~  181 (310)
                      +.+|..|++
T Consensus       314 D~rISLWkL  322 (323)
T KOG0322|consen  314 DARISLWKL  322 (323)
T ss_pred             CceEEeeec
Confidence            888888763

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=89.48  E-value=11  Score=31.03  Aligned_cols=108  Identities=10%  Similarity=0.102  Sum_probs=63.7

Q ss_pred             CCcEEEEECCCc-eEEEeCCCCeEEEEEeec---CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018           58 TGDLYIADAYLG-FQVVGPEGGLATQLVTEA---AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR  133 (310)
Q Consensus        58 ~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~  133 (310)
                      +|-+++...... |..+|.+-.......+..   .+........+++||.|+ |.++...                 +..
T Consensus       193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~-----------------dss  254 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHA-----------------DSS  254 (350)
T ss_pred             cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccC-----------------CCc
Confidence            566666655544 555565543332222221   233334567899999999 8887532                 455


Q ss_pred             EEEEeCCCCeEE-EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          134 LLKYEKTTKEVT-ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       134 v~~~d~~~~~~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ...||..+++.. .+.+.-.....+.|+|.--+|+ +-+....|..-|+.|.
T Consensus       255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGD  305 (350)
T ss_pred             eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccc
Confidence            667777666543 3333334456788998655444 4467778877776653

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=89.42  E-value=0.45  Score=27.13  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=17.6

Q ss_pred             CCCeeEECCCCCEEEEEecCC
Q 046018          198 FPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~~~  218 (310)
                      .+.+|++|++|++||+.....
T Consensus        14 ~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eEEEEEECCCCCEEEEEeecC
Confidence            478999999999999876544

SBBP stands for Seven Bladed Beta Propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.30  E-value=17  Score=33.06  Aligned_cols=130  Identities=14%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             eEEEeCC--CCeE-EEEEeecC---CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe
Q 046018           70 FQVVGPE--GGLA-TQLVTEAA---GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE  143 (310)
Q Consensus        70 i~~~d~~--~~~~-~~~~~~~~---~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  143 (310)
                      ++|....  .+.. +.+.+...   +........+.++|+|+++.++-+.             .+.....++.+|.++|+
T Consensus        95 ~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~-------------~G~e~~~l~v~Dl~tg~  161 (414)
T PF02897_consen   95 LYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSD-------------GGSEWYTLRVFDLETGK  161 (414)
T ss_dssp             EEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEE-------------TTSSEEEEEEEETTTTE
T ss_pred             EEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecC-------------CCCceEEEEEEECCCCc
Confidence            5565544  3333 45555421   1111233467789999977766432             12223468899999886


Q ss_pred             EEEEecCCcccceEEEecCCCeEEEEecC----------CceEEEEEccCCCCCcceeeeeCCCCCC---eeEECCCCCE
Q 046018          144 VTILLQGLAFANGVALSRDRTFILIAETS----------NCRILRFWLHGPNSGKQDVFAELPGFPD---NVRSNSNGEF  210 (310)
Q Consensus       144 ~~~~~~~~~~~~gi~~~~d~~~lyv~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~p~---~i~~d~~G~l  210 (310)
                      ...-.-......+++|.+|++.+|.+...          ...|+++....... ....+...+..+.   ++..+++|+.
T Consensus       162 ~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~  240 (414)
T PF02897_consen  162 FLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRY  240 (414)
T ss_dssp             EEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSE
T ss_pred             CcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH-hCeeEEeecCCCcEEEEEEecCcccE
Confidence            54311011122349999998877776543          33577777654322 2123322222222   5777888875


Q ss_pred             EEE
Q 046018          211 WVA  213 (310)
Q Consensus       211 ~va  213 (310)
                      .+.
T Consensus       241 l~i  243 (414)
T PF02897_consen  241 LFI  243 (414)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.26  E-value=12  Score=33.26  Aligned_cols=144  Identities=11%  Similarity=0.019  Sum_probs=69.0

Q ss_pred             ceEEEeCCCCcEEEEECCCc-eEEEe-CCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           50 LGIRFDKKTGDLYIADAYLG-FQVVG-PEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~g-i~~~d-~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .-+++.. +|.+..+...+| +..++ |+-.   ++....  .....+.++.++|||. +.++...              
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~---t~l~e~--~~~~eV~DL~FS~dgk-~lasig~--------------  206 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSML---TILEEI--AHHAEVKDLDFSPDGK-FLASIGA--------------  206 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcch---hhhhhH--hhcCccccceeCCCCc-EEEEecC--------------
Confidence            3466766 666666655555 44445 4321   111111  1123688999999999 7777633              


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCcc---cceEEEecCC--CeEEEEec--CCceEEEEEccCC---CCCcceeeeeCCC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLAF---ANGVALSRDR--TFILIAET--SNCRILRFWLHGP---NSGKQDVFAELPG  197 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~~---~~gi~~~~d~--~~lyv~~~--~~~~i~~~~~~~~---~~~~~~~~~~~~~  197 (310)
                         + ....|+.+++..-.-..+...   -.-+.|+.|+  ..|+++..  ..++|..++..-.   .............
T Consensus       207 ---d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~  282 (398)
T KOG0771|consen  207 ---D-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK  282 (398)
T ss_pred             ---C-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence               2 455566666622111111111   1234444444  33555433  3345555554311   0000011100112


Q ss_pred             CCCeeEECCCCCEEE-EEecCC
Q 046018          198 FPDNVRSNSNGEFWV-ALHAKK  218 (310)
Q Consensus       198 ~p~~i~~d~~G~l~v-a~~~~~  218 (310)
                      ....|+++.+|++.. ++..+.
T Consensus       283 siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  283 SISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             cceeEEEcCCCcEEEEeccCCc
Confidence            457899999998655 454433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=89.21  E-value=8  Score=34.71  Aligned_cols=115  Identities=14%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             eEEEeCC-CCcEEEEECCCceEEEeCCCCeEE-E-E--EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           51 GIRFDKK-TGDLYIADAYLGFQVVGPEGGLAT-Q-L--VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        51 gl~~d~~-~g~l~v~~~~~gi~~~d~~~~~~~-~-~--~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ||.++.. .|.|.-+...+.|..+|....... . +  .....+ -....+++++.+-...+|.+...            
T Consensus       182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~d------------  248 (422)
T KOG0264|consen  182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVGD------------  248 (422)
T ss_pred             ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeecC------------
Confidence            5666542 334444444455777766543221 0 0  000111 12247888888765546655432            


Q ss_pred             hcCCCCceEEEEeCCCC--eEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          126 LSGDKTGRLLKYEKTTK--EVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~--~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                           ++.+..||..++  +.+..... ....+.++|.|-+.+++.+.+.+++|..||++.
T Consensus       249 -----d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn  304 (422)
T KOG0264|consen  249 -----DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN  304 (422)
T ss_pred             -----CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence                 778999997642  12211122 234589999998888999888899999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.80  E-value=12  Score=34.66  Aligned_cols=134  Identities=10%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      .+.|-|+ ....|+.++..++.++.+.+..    ...+..+..+++|+.|-++.                  ..|.|..|
T Consensus       188 ~n~laVa-lg~~vylW~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~------------------~~g~v~iw  244 (484)
T KOG0305|consen  188 ANVLAVA-LGQSVYLWSASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGT------------------SDGTVQIW  244 (484)
T ss_pred             CCeEEEE-ecceEEEEecCCCceEEeEecC----CCceEEEEECCCCCEEEEee------------------cCCeEEEE
Confidence            3344444 5556999999998877665432    34678899999999565555                  37889999


Q ss_pred             eCCCCeEEEEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEe
Q 046018          138 EKTTKEVTILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       138 d~~~~~~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~  215 (310)
                      |.++.+...-...  ......+++.  .. ++.+....+.|..+|..-.... ......-....-++.+.+||+...+..
T Consensus       245 D~~~~k~~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGg  320 (484)
T KOG0305|consen  245 DVKEQKKTRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGG  320 (484)
T ss_pred             ehhhccccccccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCC
Confidence            9865433222222  2234456666  33 6667778889999988632110 010110112235677777776655543


Q ss_pred             cCC
Q 046018          216 AKK  218 (310)
Q Consensus       216 ~~~  218 (310)
                      ..+
T Consensus       321 nDN  323 (484)
T KOG0305|consen  321 NDN  323 (484)
T ss_pred             Ccc
Confidence            333

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=88.52  E-value=5.2  Score=35.53  Aligned_cols=99  Identities=12%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC--------C-----C-eEEE---EecCCcccc
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT--------T-----K-EVTI---LLQGLAFAN  155 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--------~-----~-~~~~---~~~~~~~~~  155 (310)
                      ...|.+.++|+|. +..+...                 .|.|+.|-+.        +     . .+.+   +..-...+.
T Consensus        66 ~aVN~vRf~p~ge-lLASg~D-----------------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy  127 (434)
T KOG1009|consen   66 RAVNVVRFSPDGE-LLASGGD-----------------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY  127 (434)
T ss_pred             ceeEEEEEcCCcC-eeeecCC-----------------CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchh
Confidence            3578999999999 8876532                 5556665433        1     1 1111   111223467


Q ss_pred             eEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEE
Q 046018          156 GVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWV  212 (310)
Q Consensus       156 gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v  212 (310)
                      .++++||+.++. +.+..+.+..||...+.+  ...+.+-..++.+++.|+-+....
T Consensus       128 dL~Ws~d~~~l~-s~s~dns~~l~Dv~~G~l--~~~~~dh~~yvqgvawDpl~qyv~  181 (434)
T KOG1009|consen  128 DLAWSPDSNFLV-SGSVDNSVRLWDVHAGQL--LAILDDHEHYVQGVAWDPLNQYVA  181 (434)
T ss_pred             hhhccCCCceee-eeeccceEEEEEecccee--Eeeccccccccceeecchhhhhhh
Confidence            899999998544 557778999999874321  111222335677777777665443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=88.51  E-value=17  Score=32.08  Aligned_cols=124  Identities=10%  Similarity=0.092  Sum_probs=69.3

Q ss_pred             ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018           69 GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL  148 (310)
Q Consensus        69 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  148 (310)
                      -|..++.+++........   . ..-..-+.+..||. |..+-+.                 +.+|..|-..+++++.+.
T Consensus       216 tik~We~~tg~cv~t~~~---h-~ewvr~v~v~~DGt-i~As~s~-----------------dqtl~vW~~~t~~~k~~l  273 (406)
T KOG0295|consen  216 TIKAWECDTGYCVKTFPG---H-SEWVRMVRVNQDGT-IIASCSN-----------------DQTLRVWVVATKQCKAEL  273 (406)
T ss_pred             ceeEEecccceeEEeccC---c-hHhEEEEEecCCee-EEEecCC-----------------CceEEEEEeccchhhhhh
Confidence            355556665543222111   1 11355677778887 7766543                 556666766665333222


Q ss_pred             cCCccc-ceEEEec--------------CCCeEEEEecCCceEEEEEccCCCCCcceeeee---CCCCCCeeEECCCCCE
Q 046018          149 QGLAFA-NGVALSR--------------DRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LPGFPDNVRSNSNGEF  210 (310)
Q Consensus       149 ~~~~~~-~gi~~~~--------------d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~l  210 (310)
                      .....| ..++|.|              ++.....+.+.++.|..||+..+     ..+..   ......++++.|.|+.
T Consensus       274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-----~cL~tL~ghdnwVr~~af~p~Gky  348 (406)
T KOG0295|consen  274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-----MCLFTLVGHDNWVRGVAFSPGGKY  348 (406)
T ss_pred             hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-----eEEEEEecccceeeeeEEcCCCeE
Confidence            222221 2233322              12224555577788999988743     22322   2346688999999999


Q ss_pred             EEEEecCCc
Q 046018          211 WVALHAKKG  219 (310)
Q Consensus       211 ~va~~~~~~  219 (310)
                      .++..++..
T Consensus       349 i~ScaDDkt  357 (406)
T KOG0295|consen  349 ILSCADDKT  357 (406)
T ss_pred             EEEEecCCc
Confidence            888887765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=88.36  E-value=2.2  Score=38.53  Aligned_cols=183  Identities=11%  Similarity=0.088  Sum_probs=94.4

Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET  171 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~  171 (310)
                      -..|..+-...+|+++.++.                  ..|-|..+|..++.+..-.........++|-....++-|+  
T Consensus       129 eFGPY~~~ytrnGrhlllgG------------------rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA--  188 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGG------------------RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA--  188 (545)
T ss_pred             ccCCeeeeecCCccEEEecC------------------CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh--
Confidence            34688889999999888776                  4678889998887766544434445566666555533333  


Q ss_pred             CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccC
Q 046018          172 SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVG  251 (310)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~  251 (310)
                      -...+|+||-.|-.   ..++... .....+.+=|---|.++.+..+..    -+.+-..|+++..+.+.......+  -
T Consensus       189 QK~y~yvYD~~GtE---lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L----~Y~DVS~GklVa~~~t~~G~~~vm--~  258 (545)
T KOG1272|consen  189 QKKYVYVYDNNGTE---LHCLKRH-IRVARLEFLPYHFLLVAASEAGFL----KYQDVSTGKLVASIRTGAGRTDVM--K  258 (545)
T ss_pred             hhceEEEecCCCcE---Eeehhhc-CchhhhcccchhheeeecccCCce----EEEeechhhhhHHHHccCCccchh--h
Confidence            34677888765431   2222111 011233333444455555544421    122334566655554322111111  1


Q ss_pred             CCCceEEEEECCCCCEEEEEEcCCC-Ce-------ecceeEEEEeCCEEEEecCCCCeEEEe
Q 046018          252 GKPHATAIKLSEKGEVLEVLEDCEG-KT-------LSFISEVEEKDGQLWMGSVLMPFIGIY  305 (310)
Q Consensus       252 ~~~~~~~~~~d~~g~~~~~~~~~~g-~~-------~~~~~~~~~~~g~l~vgs~~~~~i~~~  305 (310)
                      ..+...++.+...+..+..|+ |+. .+       ...+++++...+--|+.+.+.++-..+
T Consensus       259 qNP~NaVih~GhsnGtVSlWS-P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI  319 (545)
T KOG1272|consen  259 QNPYNAVIHLGHSNGTVSLWS-PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKI  319 (545)
T ss_pred             cCCccceEEEcCCCceEEecC-CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeE
Confidence            233456667765555555554 332 22       124566766544446666655554444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=88.22  E-value=6.3  Score=37.30  Aligned_cols=119  Identities=9%  Similarity=0.073  Sum_probs=67.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+-++|+++ +|+...+.-.+| |.++++..+.. ++... .++...+.-.|...-||+.+.++....           
T Consensus       721 dqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~-pv~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk-----------  786 (1012)
T KOG1445|consen  721 DQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQ-PVYEG-KGPVGTRGARILWACDGRIVIVVGFDK-----------  786 (1012)
T ss_pred             CceeEEEECC-CCcceeeeecCceEEEeCCCCCCC-ccccC-CCCccCcceeEEEEecCcEEEEecccc-----------
Confidence            5667999999 888776655554 88888887653 33222 222233445577777888344433211           


Q ss_pred             hcCCCCceEEEEeCCCCeEEE----EecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          126 LSGDKTGRLLKYEKTTKEVTI----LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~----~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                         ...-.|..||.++-....    .......+----+++|.+.|+++.-+...|+.|..-
T Consensus       787 ---~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  787 ---SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             ---cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence               012235555543321111    111111121223678888899998888999999764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.21  E-value=27  Score=35.44  Aligned_cols=203  Identities=16%  Similarity=0.166  Sum_probs=103.3

Q ss_pred             CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeC--CCCcEEEEECCCceEEEeCCCCe
Q 046018            2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDK--KTGDLYIADAYLGFQVVGPEGGL   79 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~--~~g~l~v~~~~~gi~~~d~~~~~   79 (310)
                      ++++..+|.|+.|......|-..+-  +..+..=+    .+. ...+-.|+.+|.  ..|.|+++..-.-|..+|.+...
T Consensus      1126 lLtas~dGvIRIwk~y~~~~~~~eL--VTaw~~Ls----~~~-~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPEL--VTAWSSLS----DQL-PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred             eeeeccCceEEEecccccccCCcee--EEeecccc----ccC-ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce
Confidence            4677789999999887765511000  00110000    000 112233566664  25678777543336666877543


Q ss_pred             EEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE---EEEe---cCCc
Q 046018           80 ATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV---TILL---QGLA  152 (310)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~---~~~~---~~~~  152 (310)
                        ...+.+.+ ....+..+..+- .|+ +.++...                 +|.|-.||......   ....   ....
T Consensus      1199 --~~~diP~~-s~t~vTaLS~~~~~gn-~i~AGfa-----------------DGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1199 --VVADIPYG-SSTLVTALSADLVHGN-IIAAGFA-----------------DGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             --eEeecccC-CCccceeecccccCCc-eEEEeec-----------------CCceEEeecccCCccccceeecccCCcc
Confidence              23333222 233455555553 467 7777643                 78888887532211   1111   1112


Q ss_pred             ccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeeeC-CC-CCCeeEECCCCCEEEEEecCCccceeeeeecc
Q 046018          153 FANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAEL-PG-FPDNVRSNSNGEFWVALHAKKGLFGKLILLNS  229 (310)
Q Consensus       153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~-~~-~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~  229 (310)
                      ...++.+-+.|-.=+|+.+.++.|..+|+... ..........- .| .-..|.+.+.-.|+.+... . .    +.+|+
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~----ikIy~ 1331 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-L----IKIYS 1331 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-e----EEEEe
Confidence            24566666654323566688899999999853 22222222221 12 1355677666666544433 2 2    66777


Q ss_pred             ccccEEeec
Q 046018          230 WLGKTLLKL  238 (310)
Q Consensus       230 ~~g~~~~~~  238 (310)
                      ..|+.+..+
T Consensus      1332 ~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1332 LSGEQLNII 1340 (1387)
T ss_pred             cChhhhccc
Confidence            666655433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=87.84  E-value=25  Score=33.25  Aligned_cols=71  Identities=13%  Similarity=0.091  Sum_probs=48.2

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN  173 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~  173 (310)
                      ...+|.+++.|.  |++..                ..+|.|-.|...||++.....-......|+|+|..+.-+++-...
T Consensus       402 ~Vr~iSvdp~G~--wlasG----------------sdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~  463 (733)
T KOG0650|consen  402 LVRSISVDPSGE--WLASG----------------SDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG  463 (733)
T ss_pred             eEEEEEecCCcc--eeeec----------------CCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEec
Confidence            356778888775  55542                247888889988888766544455678899999877433333445


Q ss_pred             ceEEEEEcc
Q 046018          174 CRILRFWLH  182 (310)
Q Consensus       174 ~~i~~~~~~  182 (310)
                      .++.+.++.
T Consensus       464 ~~~~ivnp~  472 (733)
T KOG0650|consen  464 ECVLIVNPI  472 (733)
T ss_pred             CceEEeCcc
Confidence            567777764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=87.53  E-value=11  Score=35.61  Aligned_cols=107  Identities=9%  Similarity=-0.018  Sum_probs=67.8

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCcc--ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQP--LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL  135 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (310)
                      ...||+++..++|..+|.+...++.--.......  .+.+.+++..| |...+|+.++                 +.++.
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasG-----------------DsT~r  125 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASG-----------------DSTIR  125 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccC-----------------Cceee
Confidence            4468888888778888776544330000011111  12355666677 6657777654                 66788


Q ss_pred             EEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          136 KYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       136 ~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                      .||.++.++.-..   .....-..+++.+++..++++...++.|.+||+.
T Consensus       126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen  126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            8998776654321   1112245688999888889988888999999986

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.45  E-value=16  Score=30.77  Aligned_cols=120  Identities=17%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEE--eCCCCeEEEE-EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVV--GPEGGLATQL-VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~--d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .......+++ ++.+|++.......++  +..++..... .... .... .+..+.++|||.|+-+.....         
T Consensus        66 ~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~-~~~~-~I~~l~vSpDG~RvA~v~~~~---------  133 (253)
T PF10647_consen   66 GSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWP-GLRG-RITALRVSPDGTRVAVVVEDG---------  133 (253)
T ss_pred             CccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeEEeccc-ccCC-ceEEEEECCCCcEEEEEEecC---------
Confidence            3555677889 7999999886442222  2223333222 2221 1111 577899999999877765321         


Q ss_pred             hhhcCCCCceEEEE--eC-CCCeEEE------Ee-cCCcccceEEEecCCCeEEEEecCCceEEE-EEccCC
Q 046018          124 SILSGDKTGRLLKY--EK-TTKEVTI------LL-QGLAFANGVALSRDRTFILIAETSNCRILR-FWLHGP  184 (310)
Q Consensus       124 ~~~~~~~~g~v~~~--d~-~~~~~~~------~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~-~~~~~~  184 (310)
                            ..+.|+.-  -. ..+....      +. ........++|.+++..++.+......+.. +..++.
T Consensus       134 ------~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~  199 (253)
T PF10647_consen  134 ------GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG  199 (253)
T ss_pred             ------CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence                  13444432  21 1220111      11 123345689999998855555555555666 666654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=87.05  E-value=22  Score=31.75  Aligned_cols=145  Identities=10%  Similarity=-0.005  Sum_probs=77.3

Q ss_pred             cccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEee--cCCccc-cCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           44 HICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTE--AAGQPL-RFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        44 ~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~--~~~~~~-~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      ...++...|.++. +++..+..... .+..++.+.....+..+.  ..+.+. ..+.+++++...+ ..++..       
T Consensus        54 ~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~-------  124 (609)
T KOG4227|consen   54 EHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGE-------  124 (609)
T ss_pred             hhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCC-------
Confidence            3457888999988 66644443322 244455443221111111  012222 3466788888777 444432       


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeeeC
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAEL  195 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~  195 (310)
                                ..+.|.+-|.++.+..-+...   -....++..+|-.+ .+++.+..+.|..||.... ..+...+.++.
T Consensus       125 ----------~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  125 ----------RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             ----------CcceeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence                      367888888876544333321   22356788888666 4455578889999988643 23333333333


Q ss_pred             CCCCCeeEECCCC
Q 046018          196 PGFPDNVRSNSNG  208 (310)
Q Consensus       196 ~~~p~~i~~d~~G  208 (310)
                      +..-..+.+.|.-
T Consensus       194 ~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  194 GKNFYTAEFHPET  206 (609)
T ss_pred             CccceeeeecCCC
Confidence            3222334455544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=87.04  E-value=21  Score=31.65  Aligned_cols=117  Identities=9%  Similarity=0.074  Sum_probs=68.6

Q ss_pred             ccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEE-EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQ-LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ......+|.++|....+++...-.+ |..+|.+.+.-+. +...   .....+|-|....+-. +.++.           
T Consensus       256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k---Ah~sDVNVISWnr~~~-lLasG-----------  320 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK---AHNSDVNVISWNRREP-LLASG-----------  320 (440)
T ss_pred             cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee---ccCCceeeEEccCCcc-eeeec-----------
Confidence            3356678999986667777766555 7777877662211 1111   1112455555555544 33332           


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEE----EEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVT----ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~----~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                            ..+|.+-.||...-+..    .+..-......|.|.|.....+.+....++|.+||+.
T Consensus       321 ------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  321 ------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             ------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence                  24788888886422111    1111122346899999776677777778899999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=86.96  E-value=17  Score=30.38  Aligned_cols=115  Identities=11%  Similarity=0.039  Sum_probs=58.4

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCC----cceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFT----NDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~----~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ...|-++.-..++.++-+...+-+..+|.++++-...+..+..+...+|    .-.|++-+..++..+.           
T Consensus       157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-----------  225 (325)
T KOG0649|consen  157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-----------  225 (325)
T ss_pred             ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-----------
Confidence            4566666533378888776555577789998887666554433222222    1244444444333322           


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                              ...+..|+...-+.+.+.+-.....-+.|..|  .++++ -..+.|..|...|
T Consensus       226 --------Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~-G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  226 --------GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIG-GEGNHVQSYTLNG  275 (325)
T ss_pred             --------CCceeEEeccCCCceEEEecccceeEeeeecc--eEEEe-ccccceeeeeecc
Confidence                    22345555433334333322223345555543  23433 3346777776553

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=86.92  E-value=17  Score=30.53  Aligned_cols=85  Identities=15%  Similarity=0.299  Sum_probs=50.4

Q ss_pred             eEEEEeCCCCeEEEEec-------CCcccceEEEecCCC----eEEEEecCCceEEEEEccCCCCCcc--eeeee--CCC
Q 046018          133 RLLKYEKTTKEVTILLQ-------GLAFANGVALSRDRT----FILIAETSNCRILRFWLHGPNSGKQ--DVFAE--LPG  197 (310)
Q Consensus       133 ~v~~~d~~~~~~~~~~~-------~~~~~~gi~~~~d~~----~lyv~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~  197 (310)
                      .+|.+|++.+.++.+..       ....+.|+++..+.+    .++|. ...+-|..|.+-.+..+..  ..+.+  ++.
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~-~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t  205 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVN-RRQGDIAQYKLIDQGNGKVGTKLVRQFKIPT  205 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEe-cCCCceeEEEEEecCCceEcceeeEeeecCC
Confidence            47888998776665442       234567999987644    23444 4557888887642111111  12222  344


Q ss_pred             CCCeeEEC-CCCCEEEEEecCC
Q 046018          198 FPDNVRSN-SNGEFWVALHAKK  218 (310)
Q Consensus       198 ~p~~i~~d-~~G~l~va~~~~~  218 (310)
                      ...|+..| .-|.||++.-.-.
T Consensus       206 QTEG~VaDdEtG~LYIaeEdva  227 (364)
T COG4247         206 QTEGMVADDETGFLYIAEEDVA  227 (364)
T ss_pred             cccceeeccccceEEEeeccce
Confidence            45666665 5589999986654

>smart00284 OLF Olfactomedin-like domains

Probab=86.75  E-value=18  Score=30.54  Aligned_cols=109  Identities=12%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             eEEEeCCCCcEEEEECC---Cc---eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           51 GIRFDKKTGDLYIADAY---LG---FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~---~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .+|+|.  .-|||.=..   .|   |.++|+.+-.+..........+....--|+|   |. ||++.+..          
T Consensus       132 DlAvDE--~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvC---Gv-LY~~~s~~----------  195 (255)
T smart00284      132 DLAVDE--NGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMIC---GI-LYVTRSLG----------  195 (255)
T ss_pred             EEEEcC--CceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEe---eE-EEEEccCC----------
Confidence            566664  568887432   24   5688998876655444321111111112332   55 99987531          


Q ss_pred             hhcCCCCce-EEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecCCceEEEEEc
Q 046018          125 ILSGDKTGR-LLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETSNCRILRFWL  181 (310)
Q Consensus       125 ~~~~~~~g~-v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~  181 (310)
                          ....+ .+.||..+++.+.+.    .....-..|...|-.+.||+=  .++-+..|++
T Consensus       196 ----~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w--dng~~l~Y~v  251 (255)
T smart00284      196 ----SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW--NNGHLVHYDI  251 (255)
T ss_pred             ----CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE--eCCeEEEEEE
Confidence                12333 578998876544322    112223457788877778874  3455566654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=86.74  E-value=16  Score=32.51  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             eeceEEEeCCCCcEE-EEECCCce--EEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLY-IADAYLGF--QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~-v~~~~~gi--~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .+......+ +++|. +++...+.  +.++.+....+ +......  -..++.+.+..+.....+++.            
T Consensus        64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~k-l~~~~~v--~~~~~ai~~~~~~~sv~v~dk------------  127 (390)
T KOG3914|consen   64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAK-LLDVSCV--PKRPTAISFIREDTSVLVADK------------  127 (390)
T ss_pred             cccccccCC-CceEEEEEeCCCceEEEEEecCCCcce-eeeEeec--ccCcceeeeeeccceEEEEee------------
Confidence            344455555 66654 44444553  33333222122 2222111  125777777776665777773            


Q ss_pred             hhcCCCCceEEEEeC---CCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          125 ILSGDKTGRLLKYEK---TTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~---~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                            .|-++.+|.   ..+..+........--.++++||+++++.+|.. ..|++.+..
T Consensus       128 ------agD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRD-EkIRvs~yp  181 (390)
T KOG3914|consen  128 ------AGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRD-EKIRVSRYP  181 (390)
T ss_pred             ------cCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCC-ceEEEEecC
Confidence                  444555543   224444433334556789999999988877654 566665543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=86.49  E-value=21  Score=30.95  Aligned_cols=121  Identities=12%  Similarity=0.088  Sum_probs=66.2

Q ss_pred             CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC-CeEEEEecCCcccceEEE-ecC-CCeEE-EEe
Q 046018           95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT-KEVTILLQGLAFANGVAL-SRD-RTFIL-IAE  170 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~~~~~~~~gi~~-~~d-~~~ly-v~~  170 (310)
                      +.+|.++++  +|.+..                   .++++.|.-.+ -+.....+....|+|++- .|. ++.++ .-.
T Consensus        97 I~~V~l~r~--riVvvl-------------------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg  155 (346)
T KOG2111|consen   97 IKAVKLRRD--RIVVVL-------------------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG  155 (346)
T ss_pred             eeeEEEcCC--eEEEEe-------------------cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence            456666666  366665                   56677776432 222233455667888754 333 23222 233


Q ss_pred             cCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccccEEeeccc
Q 046018          171 TSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKLPL  240 (310)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~  240 (310)
                      ...+.|.+.++..........+..-.....-+++..+|.+..+....+.+    |.++ ..+|+.+.++.-
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL----IRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL----IRIFDTEDGTLLQELRR  222 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE----EEEEEcCCCcEeeeeec
Confidence            34567777777532221111111111223568889999887766666654    5445 467888777643

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.93  E-value=4.3  Score=22.53  Aligned_cols=30  Identities=23%  Similarity=0.168  Sum_probs=22.5

Q ss_pred             CCcccceEEEecCCCeEEEEecCCceEEEEE
Q 046018          150 GLAFANGVALSRDRTFILIAETSNCRILRFW  180 (310)
Q Consensus       150 ~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~  180 (310)
                      .....+.|+++|++. .+++...++.|.+||
T Consensus        10 h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   10 HSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             CCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            345578999999988 455556778998885

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=85.70  E-value=5.4  Score=35.58  Aligned_cols=20  Identities=15%  Similarity=0.134  Sum_probs=17.0

Q ss_pred             cccceEEEecCCCeEEEEec
Q 046018          152 AFANGVALSRDRTFILIAET  171 (310)
Q Consensus       152 ~~~~gi~~~~d~~~lyv~~~  171 (310)
                      ..|.-+.++-||++|||+++
T Consensus       389 GGPQMlQLSLDGKRLYVt~S  408 (476)
T KOG0918|consen  389 GGPQMLQLSLDGKRLYVTNS  408 (476)
T ss_pred             CCceeEEeccCCcEEEEEch
Confidence            34778999999999999965

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=85.68  E-value=26  Score=31.30  Aligned_cols=151  Identities=9%  Similarity=0.046  Sum_probs=82.7

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      +--|+++..+..||-+..-..|..-|.++.+...++... . ......++.++|-.+ +++..+.               
T Consensus       108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-~-~~~~VY~m~~~P~DN-~~~~~t~---------------  169 (609)
T KOG4227|consen  108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-N-NRGDVYHMDQHPTDN-TLIVVTR---------------  169 (609)
T ss_pred             eEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-C-cccceeecccCCCCc-eEEEEec---------------
Confidence            346888873334444433333666688876643333221 1 112466788888777 6655533               


Q ss_pred             CCCceEEEEeCCCCe----EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCc--ceeeeeCCCCC---
Q 046018          129 DKTGRLLKYEKTTKE----VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGK--QDVFAELPGFP---  199 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~----~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~p---  199 (310)
                        .+.|..||.....    ....+.-...-....|.|..-.|+.+....+++-+||..-+....  ...+..++...   
T Consensus       170 --~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~  247 (609)
T KOG4227|consen  170 --AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW  247 (609)
T ss_pred             --CceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence              7788888854322    122222223334677888766677777777888888876321110  01112222211   


Q ss_pred             CeeEECCCCCEEEEEecCCc
Q 046018          200 DNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       200 ~~i~~d~~G~l~va~~~~~~  219 (310)
                      .+..+.+.|+-+.+...+..
T Consensus       248 M~~~~~~~G~Q~msiRR~~~  267 (609)
T KOG4227|consen  248 MGSLWSPSGNQFMSIRRGKC  267 (609)
T ss_pred             hheeeCCCCCeehhhhccCC
Confidence            35677888877777666544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=85.40  E-value=24  Score=30.78  Aligned_cols=105  Identities=13%  Similarity=0.028  Sum_probs=59.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....|.+..++-.+.-+...+ -|+.++...-+..--++.    .......+..+|||+.|..++.-            
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde----g~agls~~~WSPdgrhiL~tseF------------  112 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE----GQAGLSSISWSPDGRHILLTSEF------------  112 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc----CCCcceeeeECCCcceEeeeecc------------
Confidence            3444566655222222222223 366666654332211222    12245678899999867777643            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS  172 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~  172 (310)
                           .-++-+|...+.+...+........|+++.|||++.-+++..
T Consensus       113 -----~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRr  154 (447)
T KOG4497|consen  113 -----DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRR  154 (447)
T ss_pred             -----eeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecc
Confidence                 445666666555555444444456899999999977666543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=85.26  E-value=8.1  Score=34.26  Aligned_cols=116  Identities=15%  Similarity=0.217  Sum_probs=66.3

Q ss_pred             ccceeceEEEeCCCCcEEEEECCCceEEEeCCC---CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEG---GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~---~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      ...+|..+.+...+-.+.|++..+.++.+|.-.   +..+.+.     .......+|++++|+++|..+| .        
T Consensus       106 v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l-----GhvSml~dVavS~D~~~IitaD-R--------  171 (390)
T KOG3914|consen  106 VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL-----GHVSMLLDVAVSPDDQFIITAD-R--------  171 (390)
T ss_pred             cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-----hhhhhhheeeecCCCCEEEEec-C--------
Confidence            345677777776566777887765555554322   3222221     1234578999999999444444 2        


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                             +..=+|.+|.. .-..+.+.- .-.+...|++.++ . ++++..+.+.|+.||...+
T Consensus       172 -------DEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~-~-~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  172 -------DEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDN-Y-LLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             -------CceEEEEecCc-ccchhhhccccHhheeeeeeccC-c-eeeecCCCCcEEEEecccC
Confidence                   11223444432 222222211 1234678888854 3 5777789999999998743

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.59  E-value=19  Score=34.88  Aligned_cols=145  Identities=10%  Similarity=0.109  Sum_probs=81.6

Q ss_pred             CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeE
Q 046018            2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLA   80 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~   80 (310)
                      +.++..|+-|.+||-..+.=+                 ..+..-.-....+.+.+..+..|++....| +..+|.+--. 
T Consensus       149 liSGSQDg~vK~~DlR~~~S~-----------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-  210 (839)
T KOG0269|consen  149 LISGSQDGTVKCWDLRSKKSK-----------------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-  210 (839)
T ss_pred             EEecCCCceEEEEeeeccccc-----------------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-
Confidence            456778888888887665200                 111111234557888887888888888877 6777876322 


Q ss_pred             EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE--ecCCcccceEE
Q 046018           81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL--LQGLAFANGVA  158 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~~~gi~  158 (310)
                       +....... -..-...+-..|++  -|+++.+                +++.|..||..+.+....  .+....-..+.
T Consensus       211 -r~~~k~~A-H~GpV~c~nwhPnr--~~lATGG----------------RDK~vkiWd~t~~~~~~~~tInTiapv~rVk  270 (839)
T KOG0269|consen  211 -RCEKKLTA-HNGPVLCLNWHPNR--EWLATGG----------------RDKMVKIWDMTDSRAKPKHTINTIAPVGRVK  270 (839)
T ss_pred             -hHHHHhhc-ccCceEEEeecCCC--ceeeecC----------------CCccEEEEeccCCCccceeEEeecceeeeee
Confidence             11110000 00012334456854  5666633                477788888765544322  22233345678


Q ss_pred             EecCCCeEEEEec--CCceEEEEEccCC
Q 046018          159 LSRDRTFILIAET--SNCRILRFWLHGP  184 (310)
Q Consensus       159 ~~~d~~~lyv~~~--~~~~i~~~~~~~~  184 (310)
                      |-|+....+.+.+  ..-.|++||...+
T Consensus       271 WRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  271 WRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             eccCccchhhhhhccccceEEEEeeccc
Confidence            8887665444322  3458999998643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=83.93  E-value=9.1  Score=33.50  Aligned_cols=83  Identities=13%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF  210 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  210 (310)
                      +-++-.|+..+.++.....  ....|||-..=..++.|+.+....|..|+...+.  ..+.+..-......+.+|. -+|
T Consensus       339 DRTikvW~~st~efvRtl~--gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~--cLRvLeGHEeLvRciRFd~-krI  413 (499)
T KOG0281|consen  339 DRTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRFDN-KRI  413 (499)
T ss_pred             CceEEEEeccceeeehhhh--cccccceehhccCeEEEecCCCceEEEEeccccH--HHHHHhchHHhhhheeecC-cee
Confidence            5568889988777665332  3456776655444589998889999999987431  1111111112345677765 346


Q ss_pred             EEEEecCC
Q 046018          211 WVALHAKK  218 (310)
Q Consensus       211 ~va~~~~~  218 (310)
                      .-+.+++.
T Consensus       414 VSGaYDGk  421 (499)
T KOG0281|consen  414 VSGAYDGK  421 (499)
T ss_pred             eeccccce
Confidence            55565554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=83.57  E-value=23  Score=31.47  Aligned_cols=57  Identities=11%  Similarity=0.070  Sum_probs=42.0

Q ss_pred             CCCCceEEEEeCCCCeEEEEecCC----cccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGL----AFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~----~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ++-...++.|.+.++.+++-...+    ....+++++|..+.++.+-+-.+.|.+||.+.+
T Consensus       230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~  290 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG  290 (440)
T ss_pred             CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence            344566888888888776532221    234689999988889998888999999999854

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=83.54  E-value=28  Score=30.02  Aligned_cols=164  Identities=21%  Similarity=0.201  Sum_probs=89.5

Q ss_pred             EeccccccccCCCCCccc---cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC
Q 046018           26 VTTSQRKECVRPFAPDIE---HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE  102 (310)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~  102 (310)
                      -+||..+|..++.-+.+.   ...+...+..++  .+..||++...|+..+|..+..-.++...... +....++++++ 
T Consensus       105 ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~-~~~d~~~v~IS-  180 (370)
T COG5276         105 SSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGGDTHDVAIS-  180 (370)
T ss_pred             CCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCCCceeEEEe-
Confidence            345555554332212222   222455577775  46899999888888887665543344333222 22234677776 


Q ss_pred             CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEecCCceEEEE
Q 046018          103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAETSNCRILRF  179 (310)
Q Consensus       103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~  179 (310)
                       |++.|++.                  .++.+..+|.....-.++...   .+...++..++  ++.|++. .+..|...
T Consensus       181 -Gn~AYvA~------------------~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vv-y~egvliv  238 (370)
T COG5276         181 -GNYAYVAW------------------RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVV-YDEGVLIV  238 (370)
T ss_pred             -cCeEEEEE------------------eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEE-cccceEEE
Confidence             44689886                  256677787654332222211   12334444443  3477774 45678888


Q ss_pred             EccCCCCCcceeeee-CCCCCCee---EECCCCCEEEEEecCC
Q 046018          180 WLHGPNSGKQDVFAE-LPGFPDNV---RSNSNGEFWVALHAKK  218 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~-~~~~p~~i---~~d~~G~l~va~~~~~  218 (310)
                      |.++.  .+...+.. .+..|.++   .+ ++...|++....+
T Consensus       239 d~s~~--ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~g  278 (370)
T COG5276         239 DVSGP--SSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKG  278 (370)
T ss_pred             ecCCC--CCceEeeccccCCcccccceec-ccceeeeeccccC
Confidence            77653  23344433 22334443   44 4567888887654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=82.86  E-value=30  Score=29.79  Aligned_cols=88  Identities=13%  Similarity=0.080  Sum_probs=55.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCccee-----------ee-e--
Q 046018          130 KTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDV-----------FA-E--  194 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~-----------~~-~--  194 (310)
                      ..-.|..+|.++|.+.....+. ...-.+.|+|...+++.+.+..++|..||+... .+....           +. +  
T Consensus       166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra-sgcf~~lD~hn~k~~p~~~~n~a  244 (397)
T KOG4283|consen  166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA-SGCFRVLDQHNTKRPPILKTNTA  244 (397)
T ss_pred             CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc-cceeEEeecccCccCcccccccc
Confidence            3557888999989887544332 234567889988888888888889999988621 011111           11 1  


Q ss_pred             CCCCCCeeEECCCC-CEEEEEecCC
Q 046018          195 LPGFPDNVRSNSNG-EFWVALHAKK  218 (310)
Q Consensus       195 ~~~~p~~i~~d~~G-~l~va~~~~~  218 (310)
                      -.+..+++++.++| .+|....+++
T Consensus       245 h~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  245 HYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             ccceeeeeeecccchhhhhccCccc
Confidence            01334778998888 4555544444

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.72  E-value=45  Score=31.70  Aligned_cols=158  Identities=14%  Similarity=0.118  Sum_probs=88.4

Q ss_pred             eccccccccCCCCCc--cccccceeceEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC
Q 046018           27 TTSQRKECVRPFAPD--IEHICGRPLGIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH  103 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~--~~~~~~~p~gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~  103 (310)
                      ..|+.+++.+.++..  +....+...++++.. .+.+++... ..-+..+|..++..+.....       ....+.+...
T Consensus       228 ~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-------h~stv~~~~~  299 (537)
T KOG0274|consen  228 STLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQG-------HTSSVRCLTI  299 (537)
T ss_pred             ceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecC-------CCceEEEEEc
Confidence            344455554422211  233346677888875 344444444 44588889888887765432       2333444444


Q ss_pred             CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          104 KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       104 g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                      +....++.+                 .+..|..|+.++++...+..+. ...+.+.++  +. +.|+.+..+.|.+|++.
T Consensus       300 ~~~~~~sgs-----------------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  300 DPFLLVSGS-----------------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             cCceEeecc-----------------CCceEEEEeccCcceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhh
Confidence            441333322                 3678999998877776655432 234666666  44 55666778899999976


Q ss_pred             CCCCCcceeeeeCC---CCCCeeEECCCCCEEEEEecC
Q 046018          183 GPNSGKQDVFAELP---GFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       183 ~~~~~~~~~~~~~~---~~p~~i~~d~~G~l~va~~~~  217 (310)
                      ..     +.+..+.   +....+.++....++-+..+.
T Consensus       360 ~~-----~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~  392 (537)
T KOG0274|consen  360 TG-----KCLKSLSGHTGRVYSLIVDSENRLLSGSLDT  392 (537)
T ss_pred             hc-----eeeeeecCCcceEEEEEecCcceEEeeeecc
Confidence            32     2333332   233456676654455555553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=82.58  E-value=61  Score=33.16  Aligned_cols=115  Identities=12%  Similarity=0.079  Sum_probs=70.0

Q ss_pred             eeceEEEeCCCCcEEEEECCCc---eEEEeCC--CCeEEEEEeecCC---ccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLG---FQVVGPE--GGLATQLVTEAAG---QPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~g---i~~~d~~--~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      ...+.++|..++.+|++.....   ...++..  ......++.....   .+...+-++..-++...++++.        
T Consensus        23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~--------   94 (928)
T PF04762_consen   23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIAL--------   94 (928)
T ss_pred             ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEE--------
Confidence            3456777876778888877532   2333221  1222334333211   1223445555556655466665        


Q ss_pred             hhhhhhhcCCCCceEEEE----eCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEc
Q 046018          120 QFMSSILSGDKTGRLLKY----EKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWL  181 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~----d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~  181 (310)
                                ..|.|+.+    ++++...+.+..-..+..+++|+||+..|.++ ++.+.|.....
T Consensus        95 ----------~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~v-T~~~~l~~mt~  149 (928)
T PF04762_consen   95 ----------ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALV-TGEGNLLLMTR  149 (928)
T ss_pred             ----------CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEE-eCCCEEEEEec
Confidence                      36778888    77777788776656678899999999966665 66777777653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.64  E-value=41  Score=30.51  Aligned_cols=153  Identities=9%  Similarity=0.082  Sum_probs=79.6

Q ss_pred             ccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCC-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEG-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      ....+..+.+.+.+....+.+.....+ +...|.+. .........     ......++.++.....+++..        
T Consensus       283 ~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-----~g~VEkv~w~~~se~~f~~~t--------  349 (463)
T KOG0270|consen  283 THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-----DGEVEKVAWDPHSENSFFVST--------  349 (463)
T ss_pred             hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-----ccceEEEEecCCCceeEEEec--------
Confidence            344466778888886777766666544 55555542 110001110     012444566654432333332        


Q ss_pred             hhhhhhcCCCCceEEEEeCCCC-eEE-EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC-CC
Q 046018          121 FMSSILSGDKTGRLLKYEKTTK-EVT-ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-PG  197 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~-~~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~  197 (310)
                               .+|.|+.+|...- +.. .+..-.....||++++.-..+.++.+..+.|..|+.+....+... ...+ -+
T Consensus       350 ---------ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~~~~  419 (463)
T KOG0270|consen  350 ---------DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSFKLG  419 (463)
T ss_pred             ---------CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-ccccccc
Confidence                     3778888875322 111 111122356899999877668888788888888887643221110 0111 12


Q ss_pred             CCCeeEECCCCCEEEEEecCC
Q 046018          198 FPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~~~  218 (310)
                      .-..++.+++--.+.+..+..
T Consensus       420 rl~c~~~~~~~a~~la~GG~k  440 (463)
T KOG0270|consen  420 RLHCFALDPDVAFTLAFGGEK  440 (463)
T ss_pred             ceeecccCCCcceEEEecCcc
Confidence            234556666665555554433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.16  E-value=52  Score=31.42  Aligned_cols=52  Identities=17%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc
Q 046018            2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG   69 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g   69 (310)
                      .+++.+|-.|..|+=+.. |-           |.    +.++........+++.|++.+-++...-++
T Consensus       112 vLtsSDDm~iKlW~we~~-wa-----------~~----qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen  112 VLTSSDDMTIKLWDWENE-WA-----------CE----QTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             EEecCCccEEEEeeccCc-ee-----------ee----eEEcCcceEEEEEEecCCCccceeeeeccc
Confidence            456777777888877543 64           11    233444456668999998888787766554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=81.15  E-value=11  Score=35.30  Aligned_cols=69  Identities=10%  Similarity=0.101  Sum_probs=50.6

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN  173 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~  173 (310)
                      .+...+.+|+...+.++=                  .+|.|..||...+..+ .....-.|.-++|.|+|..+.| .+..
T Consensus       261 ~v~~ca~sp~E~kLvlGC------------------~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V-~s~q  320 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGC------------------EDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVV-GSEQ  320 (545)
T ss_pred             cceEEecCcccceEEEEe------------------cCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEE-EcCC
Confidence            466777888887455554                  3788999998765333 3344456999999999984444 4678


Q ss_pred             ceEEEEEcc
Q 046018          174 CRILRFWLH  182 (310)
Q Consensus       174 ~~i~~~~~~  182 (310)
                      +.|..||+.
T Consensus       321 GelQ~FD~A  329 (545)
T PF11768_consen  321 GELQCFDMA  329 (545)
T ss_pred             ceEEEEEee
Confidence            999999986

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=80.89  E-value=32  Score=28.86  Aligned_cols=145  Identities=13%  Similarity=0.154  Sum_probs=68.9

Q ss_pred             eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC----CeEE
Q 046018           70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT----KEVT  145 (310)
Q Consensus        70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~----~~~~  145 (310)
                      -..+|+.+++++.+... .   -.+..+-++.+||+ +.++.-..              .....+..|++.+    ..+.
T Consensus        48 s~~yD~~tn~~rpl~v~-t---d~FCSgg~~L~dG~-ll~tGG~~--------------~G~~~ir~~~p~~~~~~~~w~  108 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQ-T---DTFCSGGAFLPDGR-LLQTGGDN--------------DGNKAIRIFTPCTSDGTCDWT  108 (243)
T ss_pred             EEEEecCCCcEEeccCC-C---CCcccCcCCCCCCC-EEEeCCCC--------------ccccceEEEecCCCCCCCCce
Confidence            34568888887655221 1   12344456778999 66654221              0122355666643    1222


Q ss_pred             EEecCCccc---ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce--eeeeC-CCCCCe----eEECCCCCEEEEEe
Q 046018          146 ILLQGLAFA---NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD--VFAEL-PGFPDN----VRSNSNGEFWVALH  215 (310)
Q Consensus       146 ~~~~~~~~~---~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~--~~~~~-~~~p~~----i~~d~~G~l~va~~  215 (310)
                      .....+..+   .....-+||+.+++..+.+.....+...........  .+... ...+.+    +.+-++|+|++..+
T Consensus       109 e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an  188 (243)
T PF07250_consen  109 ESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN  188 (243)
T ss_pred             ECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence            111122221   133445699966666555434333322111111111  11111 012233    56779999999887


Q ss_pred             cCCccceeeeeeccccccEEeecc
Q 046018          216 AKKGLFGKLILLNSWLGKTLLKLP  239 (310)
Q Consensus       216 ~~~~~~~~~i~~~~~~g~~~~~~~  239 (310)
                      ...      ++.+....+.+..+|
T Consensus       189 ~~s------~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  189 RGS------IIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCc------EEEeCCCCeEEeeCC
Confidence            655      444444444545543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.80  E-value=9.7  Score=38.30  Aligned_cols=107  Identities=15%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC----CcccceEEEecCCCeEEEE
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG----LAFANGVALSRDRTFILIA  169 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----~~~~~gi~~~~d~~~lyv~  169 (310)
                      .+.++-+.+.+. -+.+..                ..+|.|+.||...- -+....+    ......++|...-.+++.+
T Consensus       118 ~V~gLDfN~~q~-nlLASG----------------a~~geI~iWDlnn~-~tP~~~~~~~~~~eI~~lsWNrkvqhILAS  179 (1049)
T KOG0307|consen  118 PVLGLDFNPFQG-NLLASG----------------ADDGEILIWDLNKP-ETPFTPGSQAPPSEIKCLSWNRKVSHILAS  179 (1049)
T ss_pred             ceeeeeccccCC-ceeecc----------------CCCCcEEEeccCCc-CCCCCCCCCCCcccceEeccchhhhHHhhc
Confidence            355677777766 444442                24889999998641 1222221    1224567888776678887


Q ss_pred             ecCCceEEEEEccCCCCCcceeeeeCCC--CCCeeEECCCC--CEEEEEecCCcc
Q 046018          170 ETSNCRILRFWLHGPNSGKQDVFAELPG--FPDNVRSNSNG--EFWVALHAKKGL  220 (310)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G--~l~va~~~~~~~  220 (310)
                      .+.+++..+||++..+  ..-.+...++  .-..+++.+++  +|++|..+.+..
T Consensus       180 ~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P  232 (1049)
T KOG0307|consen  180 GSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP  232 (1049)
T ss_pred             cCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence            7778899999987431  1111222111  12468888888  799988776643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=80.71  E-value=56  Score=33.38  Aligned_cols=150  Identities=12%  Similarity=0.036  Sum_probs=78.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEE---EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQ---LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~---~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..+..|..+-..|++.++...+| |..+|.+......   ........+  .+.++.+-+.|-.=.|+.+          
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~--~Iv~~slq~~G~~elvSgs---------- 1276 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE--PIVHLSLQRQGLGELVSGS---------- 1276 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc--cceeEEeecCCCcceeeec----------
Confidence            45667776655678888888866 6666765432211   111111111  1445555554432133332          


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEec----C--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce---eee
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQ----G--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD---VFA  193 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~----~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~---~~~  193 (310)
                             .+|.|..+|+.....+....    -  ...-..+.+.++-. ++.+.+. +.|.+|+..|.+.....   .|.
T Consensus      1277 -------~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1277 -------QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred             -------cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccc
Confidence                   37889999876422221111    0  11134577777665 6666554 89999999876443332   121


Q ss_pred             e-CCCCCCeeEECCCCCEEEEEecC
Q 046018          194 E-LPGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       194 ~-~~~~p~~i~~d~~G~l~va~~~~  217 (310)
                      . .-+.+..+++.|---+.++.+..
T Consensus      1348 ~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred             cCcCCCcceeeecchhHhhhhccCC
Confidence            1 11345667777766554444333

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=80.30  E-value=55  Score=31.13  Aligned_cols=135  Identities=16%  Similarity=0.158  Sum_probs=73.1

Q ss_pred             ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018           69 GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL  148 (310)
Q Consensus        69 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  148 (310)
                      -|.+++.++++...+...    ....++.|..+  +. +.|+.+.                 ++.|..|++.++++....
T Consensus       312 tVkVW~v~n~~~l~l~~~----h~~~V~~v~~~--~~-~lvsgs~-----------------d~~v~VW~~~~~~cl~sl  367 (537)
T KOG0274|consen  312 TVKVWDVTNGACLNLLRG----HTGPVNCVQLD--EP-LLVSGSY-----------------DGTVKVWDPRTGKCLKSL  367 (537)
T ss_pred             eEEEEeccCcceEEEecc----ccccEEEEEec--CC-EEEEEec-----------------CceEEEEEhhhceeeeee
Confidence            477778887765544332    12246677776  55 4444432                 678999999877765543


Q ss_pred             cCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC---CCCCeeEECCCCCEEEEEecCCccceee
Q 046018          149 QGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP---GFPDNVRSNSNGEFWVALHAKKGLFGKL  224 (310)
Q Consensus       149 ~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~l~va~~~~~~~~~~~  224 (310)
                      .+.. ....+.++.. . .+++.+.+..|..||+.++.    +....+.   .....+.+  .++++++....+.     
T Consensus       368 ~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~----~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-----  434 (537)
T KOG0274|consen  368 SGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKR----KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-----  434 (537)
T ss_pred             cCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchh----hhhhhhcCCccccccccc--ccceeEecccccc-----
Confidence            3322 2345555543 4 34455666889999987541    1111111   11222222  3556666555553     


Q ss_pred             eeec-cccccEEeeccc
Q 046018          225 ILLN-SWLGKTLLKLPL  240 (310)
Q Consensus       225 i~~~-~~~g~~~~~~~~  240 (310)
                      |..+ ..+++.++.+..
T Consensus       435 Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  435 IKLWDAEEGECLRTLEG  451 (537)
T ss_pred             EEEeecccCceeeeecc
Confidence            3333 345666665554

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=80.20  E-value=38  Score=30.64  Aligned_cols=109  Identities=11%  Similarity=0.047  Sum_probs=59.4

Q ss_pred             eeceEEEeCCCCcEEEEECC------------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCc
Q 046018           48 RPLGIRFDKKTGDLYIADAY------------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS  115 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~  115 (310)
                      +.+.+++.+ .|.||+-...            ..++.+|..+.+.+++... .++....-+.|++-... .|.++.-+..
T Consensus       123 sshq~va~~-s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~PS~RSGHRMvawK~~-lilFGGFhd~  199 (521)
T KOG1230|consen  123 SSHQAVAVP-SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGPSPRSGHRMVAWKRQ-LILFGGFHDS  199 (521)
T ss_pred             ccceeEEec-cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCCCCCccceeEEeeee-EEEEcceecC
Confidence            445666667 7889886532            2378888888887776332 22222233445544433 2555442211


Q ss_pred             hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-----ceEEEecCCCeEEE
Q 046018          116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-----NGVALSRDRTFILI  168 (310)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-----~gi~~~~d~~~lyv  168 (310)
                        .+.+.       .-+-||.||.++=++..+......|     ..+..+|++..+++
T Consensus       200 --nr~y~-------YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy  248 (521)
T KOG1230|consen  200 --NRDYI-------YYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY  248 (521)
T ss_pred             --CCceE-------EeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence              00000       1334889999877776665433223     35677788884433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		4e-44
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		5e-44
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		2e-41
2dso_A	333	Crystal Structure Of D138n Mutant Of Drp35, A 35kda		1e-05
2dg1_A	333	Crystal Structure Of Drp35, A 35kda Drug Responsive		3e-05
2dg0_A	333	Crystal Structure Of Drp35, A 35kda Drug Responsive		4e-05
2iav_A	312	Crystal Structure Of Squid Ganglion Dfpase H287a Mu		8e-05
2iax_A	312	Crystal Structure Of Squid Ganglion Dfpase D232s Mu		9e-05
2iao_A	312	Crystal Structure Of Squid Ganglion Dfpase E37q Mut		9e-05
2iap_A	312	Crystal Structure Of Squid Ganglion Dfpase E21q Mut		9e-05
2iaq_A	312	Crystal Structure Of Squid Ganglion Dfpase S271a Mu		9e-05
1e1a_A	314	Crystal Structure Of Dfpase From Loligo Vulgaris Le		9e-05
2iar_A	312	Crystal Structure Of Squid Ganglion Dfpase W244h Mu		1e-04
2ias_A	312	Crystal Structure Of Squid Ganglion Dfpase W244f Mu		1e-04
2iat_A	312	Crystal Structure Of Squid Ganglion Dfpase W244l Mu		1e-04
2iau_A	312	Crystal Structure Of Squid Ganglion Dfpase W244y Mu		1e-04
2iaw_A	312	Crystal Structure Of Squid Ganglion Dfpase N175d Mu		3e-04
3li3_A	314	Diisopropyl Fluorophosphatase (Dfpase), D121e Mutan		3e-04
2gvx_A	314	Structure Of Diisopropyl Fluorophosphatase (Dfpase)		3e-04
2gvu_A	314	Crystal Structure Of Diisopropyl Fluorophosphatase		3e-04
3hli_A	314	Diisopropyl Fluorophosphatase (Dfpase), Active Site		7e-04
3hlh_A	314	Diisopropyl Fluorophosphatase (Dfpase), Active Site		7e-04

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 31/306 (10%)
Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKT 58
           G YT V DGR++K++G   G+ +FA  +    +     + D E   +CGR   I ++ + 
Sbjct: 32  GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91
Query: 59  GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
             LYI D Y    VVG EGG ATQL T   G P ++   + +D+  G++YFTD ST +  
Sbjct: 92  NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151
Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R     + + DKTGRL+KY+ +TKE T+LL+ L    G  +S D +F+L+AE  + +I++
Sbjct: 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVK 211
Query: 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238
           +WL GP  G  +V  ++P  P N++ N++G FWV+  + + L G +              
Sbjct: 212 YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS--SSEELDGNM-------------- 254
Query: 239 PLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVL 298
                        G+     IK  E G +LEV+            +++E DG L++G++ 
Sbjct: 255 ------------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF 302
Query: 299 MPFIGI 304
              +GI
Sbjct: 303 HGSVGI 308

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score =  174 bits (441), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 31/306 (10%)
Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKT 58
           G YT V DGR++K++G   G+ +FA  +    +     + D E   +CGR   I ++ + 
Sbjct: 23  GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 82
Query: 59  GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
             LYI D Y    VVG EGG ATQL T   G P ++   + +D+  G++YFTD ST +  
Sbjct: 83  NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 142
Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R     + + DKTGRL+KY+ +TKE T+LL+ L    G  +S D +F+L+AE  + +I++
Sbjct: 143 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVK 202
Query: 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238
           +WL GP  G  +V  ++P  P N++ N++G FWV+  + + L G +              
Sbjct: 203 YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS--SSEELDGNM-------------- 245
Query: 239 PLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVL 298
                        G+     IK  E G +LEV+            +++E DG L++G++ 
Sbjct: 246 ------------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF 293
Query: 299 MPFIGI 304
              +GI
Sbjct: 294 HGSVGI 299

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 31/306 (10%)
Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKT 58
           G YT V DGR+ K++G   G+ +FA  +    +     + D E   +CGR   I ++ + 
Sbjct: 32  GFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91
Query: 59  GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
              YI D Y    VVG EGG ATQL T   G P ++   + +D+  G++YFTD ST +  
Sbjct: 92  NQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151
Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R       + DKTGRL KY+ +TKE T+L + L    G  +S D +F+L+AE  + +I++
Sbjct: 152 RGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQIVK 211
Query: 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238
           +WL GP  G  +V  ++P  P N++ N++G FWV+  + + L G                
Sbjct: 212 YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS--SSEELDGN--------------- 253
Query: 239 PLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVL 298
                        G+     IK  E G +LEV+            +++E DG L++G++ 
Sbjct: 254 -----------XHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF 302
Query: 299 MPFIGI 304
              +GI
Sbjct: 303 HGSVGI 308

>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug Responsive Protein From Staphylococcus Aureus Length = 333

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 36/211 (17%)
Query: 30  QRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVG-----PEGGLATQL 83
           + KE  RPF   + H    P  I+   K G L++   YLG F+  G      E G   Q 
Sbjct: 74  ETKEIKRPF---VSH-KANPAAIKI-HKDGRLFVC--YLGDFKSTGGIFAATENGDNLQD 126
Query: 84  VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE 143
           + E         ND+  D  KG  YFTD       R + ++ L G     +       + 
Sbjct: 127 IIEDLSTAYCI-NDMVFDS-KGGFYFTD------FRGYSTNPLGG-----VYYVSPDFRT 173
Query: 144 VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF----- 198
           VT ++Q ++ ANG+ALS D   + + ET+  R+ R  L       Q   A +P +     
Sbjct: 174 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233
Query: 199 -PDNVRSNSNGEFWVALHAKKGLFGKLILLN 228
            PD+   +S+   +VA++ +    G++++ N
Sbjct: 234 GPDSCCIDSDDNLYVAMYGQ----GRVLVFN 260

>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive Protein From Staphylococcus Aureus, Complexed With Ca2+ Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 36/211 (17%)
Query: 30  QRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVG-----PEGGLATQL 83
           + KE  RPF   + H    P  I+   K G L++   YLG F+  G      E G   Q 
Sbjct: 74  ETKEIKRPF---VSH-KANPAAIKI-HKDGRLFVC--YLGDFKSTGGIFAATENGDNLQD 126
Query: 84  VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE 143
           + E       +  D  + + KG  YFTD       R + ++ L G     +       + 
Sbjct: 127 IIEDLST--AYCIDDMVFDSKGGFYFTD------FRGYSTNPLGG-----VYYVSPDFRT 173
Query: 144 VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF----- 198
           VT ++Q ++ ANG+ALS D   + + ET+  R+ R  L       Q   A +P +     
Sbjct: 174 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233
Query: 199 -PDNVRSNSNGEFWVALHAKKGLFGKLILLN 228
            PD+   +S+   +VA++ +    G++++ N
Sbjct: 234 GPDSCCIDSDDNLYVAMYGQ----GRVLVFN 260

>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive Protein From Staphylococcus Aureus Length = 333

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 30  QRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVG-----PEGGLATQL 83
           + KE  RPF   + H    P  I+   K G L++   YLG F+  G      E G   Q 
Sbjct: 74  ETKEIKRPF---VSHKA-NPAAIKI-HKDGRLFVC--YLGDFKSTGGIFAATENGDNLQD 126
Query: 84  VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE 143
           + E       +  D  + + KG  YFTD       R + ++ L G     +       + 
Sbjct: 127 IIEDLST--AYCIDDXVFDSKGGFYFTD------FRGYSTNPLGG-----VYYVSPDFRT 173
Query: 144 VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF----- 198
           VT ++Q ++ ANG+ALS D   + + ET+  R+ R  L       Q   A +P +     
Sbjct: 174 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233
Query: 199 -PDNVRSNSNGEFWVALHAKKGLFGKLILLN 228
            PD+   +S+   +VA + +    G++++ N
Sbjct: 234 GPDSCCIDSDDNLYVAXYGQ----GRVLVFN 260

>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 64  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222

>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 62  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F +G+A 
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPDGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220

>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  N+  
Sbjct: 64  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222

>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase), Mutant D229n N175D Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 64  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F +G+A 
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPDGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222

>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase (Dfpase), Mutant D229n N120D Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  +D  
Sbjct: 64  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
            D ++G ++ T  +       +  S+   +K G +  +  T  ++  +     F NG+A 
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             ++  R + +++AET   ++  + + GP     + V+  +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222

>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site Mutants Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 64  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 123
Query: 100 IDEHKGVIYFT---------DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG 150
            D ++G ++ T         D++ S Q +    SI      G++++ +            
Sbjct: 124 FD-YEGNLWITAPAGEVAPADATASMQEK--FGSIYCFTTDGQMIQVDTA---------- 170
Query: 151 LAFANGVA---LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             F NG+A   ++  R + +++AE    ++  + + GP     + V+  +PG
Sbjct: 171 FQFPNGIAVRHMNDGRPYQLIVAEMPTKKLWSYDIKGPAKIENKKVWGHIPG 222

>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site Mutants Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 40  PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
           P++    G P G + D+    L++AD  LG  VV  +G        ++ G+ ++  ND  
Sbjct: 64  PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 123
Query: 100 IDEHKGVIYFT---------DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG 150
            D ++G ++ T         D++ S Q +    SI      G++++ +            
Sbjct: 124 FD-YEGNLWITAPAGEVAPADATASMQEK--FGSIYCFTTDGQMIQVDTA---------- 170
Query: 151 LAFANGVA---LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
             F NG+A   ++  R + +++AE    ++  + + GP     + V+  +PG
Sbjct: 171 FQFPNGIAVRHMNDGRPYQLIVAEMPTKKLWSYDIKGPAKIENKKVWGHIPG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-101
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	3e-37
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	1e-35
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	1e-15
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	8e-15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	4e-13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	4e-13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	8e-09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	8e-08
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	1e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	6e-05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	1e-04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	8e-04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	9e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  298 bits (764), Expect = e-101
 Identities = 96/307 (31%), Positives = 154/307 (50%), Gaps = 31/307 (10%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTS--QRKECVRPFAPDIEHICGRPLGIRFDKKT 58
           G YT V DGR++K++G   G+ +FA  +    +  C      +   +CGR   I ++ + 
Sbjct: 32  GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91

Query: 59  GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
             LYI D Y    VVG EGG ATQL T   G P ++   + +D+  G++YFTD ST +  
Sbjct: 92  NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151

Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
           R     + + DKTGRL+KY+ +TKE T+LL+ L    G  +S D +F+L+AE  + +I++
Sbjct: 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVK 211

Query: 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238
           +WL GP  G  +V  ++P  P N++ N++G FWV+   +                     
Sbjct: 212 YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL-------------------- 250

Query: 239 PLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVL 298
                      + G+     IK  E G +LEV+            +++E DG L++G++ 
Sbjct: 251 --------DGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF 302

Query: 299 MPFIGIY 305
              +GI 
Sbjct: 303 HGSVGIL 309

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score =  134 bits (338), Expect = 3e-37
 Identities = 49/286 (17%), Positives = 99/286 (34%), Gaps = 30/286 (10%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
               G   G IL+        T                 P++    G P G + D+    
Sbjct: 38  VEVNGKPAGEILRIDLKTGKKTVICK-------------PEVNGYGGIPAGCQCDRDANQ 84

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           L++AD  LG  VV  +G        ++ G+ ++  ND   D   G ++ T  +       
Sbjct: 85  LFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPAD 143

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD----RTFILIAETSNCRI 176
           +  S+   +K G +  +    + +  +     F NG+A+          +++AET   ++
Sbjct: 144 YTRSMQ--EKFGSIYCFTTDGQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 200

Query: 177 LRFWLHGPNS-GKQDVFAELP----GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWL 231
             + + GP     + V+  +P    G  D +  + +    VA          + +     
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS----SHIEVFGPDG 256

Query: 232 GKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGK 277
           G+  +++   F +  +L    +     +   E   V +      GK
Sbjct: 257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK 302

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  130 bits (328), Expect = 1e-35
 Identities = 50/309 (16%), Positives = 91/309 (29%), Gaps = 34/309 (11%)

Query: 4   TGVADGRILKWQGDELGWTEFAVTTSQRKEC--VRPFAPDIEHICGRPLGIRFDKK---T 58
           +G+    I+ +  D+ G         +      +      ++     P GI        T
Sbjct: 67  SGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT 126

Query: 59  GDLYIADAYLGFQVV----GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST 114
             L + +       V      E   +   +     + L   ND+         Y T+   
Sbjct: 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHY 185

Query: 115 SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNC 174
                     +  G     +  Y  +  +V ++ +G  FANG+ +S D  ++ IAE    
Sbjct: 186 FIDPYLKSWEMHLGLAWSFVTYY--SPNDVRVVAEGFDFANGINISPDGKYVYIAELLAH 243

Query: 175 RILRFWLHGPNSGKQDVFAELPGFPDNVR-SNSNGEFWVALHAKKGLFGKLILLNSWLGK 233
           +I  +  H   +             DN+      G+ WV  H                  
Sbjct: 244 KIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI------------ 291

Query: 234 TLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLW 293
                   F        G +       LSE+ +V  V  +  G  L   +      G+L 
Sbjct: 292 --------FFYDAENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGKLL 342

Query: 294 MGSVLMPFI 302
           +G+V    +
Sbjct: 343 IGTVFHKAL 351

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 43/221 (19%)

Query: 6   VADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIAD 65
           V +G I K   +          T + K                P  I+  K  G L++  
Sbjct: 63  VFEGNIFKINPE----------TKEIKRPFVSHK-------ANPAAIKIHKD-GRLFVCY 104

Query: 66  -----AYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
                +  G       G     ++ +         +D+  D   G  YFTD         
Sbjct: 105 LGDFKSTGGIFAATENGDNLQDIIED--LSTAYCIDDMVFDSK-GGFYFTDFRGY----- 156

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180
                 S +  G +       + VT ++Q ++ ANG+ALS D   + + ET+  R+ R  
Sbjct: 157 ------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIA 210

Query: 181 LH-----GPNSGKQDVFAEL-PGFPDNVRSNSNGEFWVALH 215
           L          G    +       PD+   +S+   +VA++
Sbjct: 211 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY 251

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 28/214 (13%)

Query: 6   VADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIAD 65
           V   R   W  D    +     +                      G   +K+ G L    
Sbjct: 47  VRQNRTWAWSDDG-QLSPEMHPS------------------HHQNGHCLNKQ-GHLIACS 86

Query: 66  AYLGFQVVG--PEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123
            +   ++      GG    +     G+ L   ND+ +    G ++F+D +    + +   
Sbjct: 87  -HGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGY 144

Query: 124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183
                +  GR +        ++  ++     NG+A        L+++T +    R+ L+ 
Sbjct: 145 GGEM-ELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNA 202

Query: 184 PNS-GKQDVFAEL-PGFPDNVRSNSNGEFWVALH 215
                 Q V   + PG  D +R ++ G  W +  
Sbjct: 203 RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAG 236

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 38/215 (17%), Positives = 62/215 (28%), Gaps = 30/215 (13%)

Query: 6   VADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIAD 65
           +   R+L W+ D          T                      G   D +   L   +
Sbjct: 64  LVGRRVLGWREDG-TVDVLLDAT------------------AFTNGNAVDAQ-QRLVHCE 103

Query: 66  AYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125
                       G A  LV   AG+ L   NDL +    G I+FTD     ++       
Sbjct: 104 HGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPA 162

Query: 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH--- 182
                   + +           +  L   NG+A S D   + +++T         +    
Sbjct: 163 DPELAHHSVYRLPPDGS-PLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFA 221

Query: 183 ---GPNSGKQDVFAEL-PGFPDNVRSNSNGEFWVA 213
              G    ++  FA +  G PD    +  G  W +
Sbjct: 222 WRDGALHDRR-HFASVPDGLPDGFCVDRGGWLWSS 255

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 67.7 bits (165), Expect = 4e-13
 Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 20/175 (11%)

Query: 47  GRPLGIRFDKKTGDLYIADAYLGFQVVG----PEGGLATQLVTEAAGQPLRFTNDLDIDE 102
           G+  G+ F    GDL     +    +         G    L+T        F N +    
Sbjct: 72  GKVSGLAFTS-NGDLVATG-WNADSIPVVSLVKSDGTVETLLTLPDA---IFLNGITPL- 125

Query: 103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD 162
                   DS         +        +G +                  F     L R 
Sbjct: 126 SDTQYLTADSYRGAIWLIDVVQ-----PSGSIWLEHPMLARSNS---ESVFPAANGLKRF 177

Query: 163 RTFILIAETSNCRILRFWLHGPNS-GKQDVFAELPGFPDNVRSNSNGEFWVALHA 216
             F+ ++ T    +LR  +   +  G+ ++F E     D+   +  G  + A H 
Sbjct: 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN-IDDFAFDVEGNLYGATHI 231

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 20/172 (11%), Positives = 49/172 (28%), Gaps = 34/172 (19%)

Query: 47  GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG 105
             P GI      GD++  +        +  +G +    +      P    + + +     
Sbjct: 99  SAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYP----SFITLGS-DN 152

Query: 106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRT 164
            ++FT++                     + +  ++       +    +   G+    D  
Sbjct: 153 ALWFTENQN-----------------NAIGRITESGDITEFKIPTPASGPVGITKGNDDA 195

Query: 165 FILIAETSNCRILRFWLHGPNSGKQDVFAELPG---FPDNVRSNSNGEFWVA 213
            +   E    +I R       SG+   F  +P     P  + + +  + W  
Sbjct: 196 -LWFVEIIGNKIGRI----TTSGEITEFK-IPTPNARPHAITAGAGIDLWFT 241

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 27/171 (15%), Positives = 51/171 (29%), Gaps = 32/171 (18%)

Query: 47  GRPLGIRFDKKTGDLYIADAYLGF-QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG 105
             P GI      GD++           +  +G +              +   + +     
Sbjct: 104 SGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTI----YEYDLPNKGSYPAFITLGS-DN 157

Query: 106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTF 165
            ++FT++  +        SI     TG+L +Y   T          A   G+    D   
Sbjct: 158 ALWFTENQNN--------SIGRITNTGKLEEYPLPT--------NAAAPVGITSGNDGA- 200

Query: 166 ILIAETSNCRILRFWLHGPNSGKQDVFAELPG---FPDNVRSNSNGEFWVA 213
           +   E    +I R       +G+   +  +P     P  + +  N E W  
Sbjct: 201 LWFVEIMGNKIGRI----TTTGEISEYD-IPTPNARPHAITAGKNSEIWFT 246

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 31/169 (18%)

Query: 48  RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVI 107
           +P G+  D   G +Y+ D       +           T      L +   L +D  +G +
Sbjct: 68  QPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNN----QTVLPFDGLNYPEGLAVDT-QGAV 121

Query: 108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL-LQGLAFANGVALSRDRTFI 166
           Y  D                     R++K    +K  T+L   GL   +GVA+      +
Sbjct: 122 YVADRGN-----------------NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V 163

Query: 167 LIAETSNCRILRFWLHGPNSGKQDVFAELPGF--PDNVRSNSNGEFWVA 213
            + +T N R+++            V         P  +  +  G  +V 
Sbjct: 164 YVTDTDNNRVVKL----EAESNNQVVLPFTDITAPWGIAVDEAGTVYVT 208

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 32/170 (18%)

Query: 48  RPLGIRFDKKTGDLYIADAYLGF--QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG 105
            P G+  D   G++Y+    +      +       T L      QP      L +D   G
Sbjct: 25  SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQP----QGLAVD-GAG 78

Query: 106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTF 165
            +Y TD +                    +     +  +  +   GL +  G+A+      
Sbjct: 79  TVYVTDFNN-----------------RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA- 120

Query: 166 ILIAETSNCRILRFWLHGPNSGKQDVFAELPGF--PDNVRSNSNGEFWVA 213
           + +A+  N R+++       S  Q V     G   PD V  +++G  +V 
Sbjct: 121 VYVADRGNNRVVKL---AAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVT 166

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 24/170 (14%)

Query: 48  RPLGIRFDKKTGDLYIADAYLGF-QVVGPEGGLATQLVTEAAGQPLRFT-NDLDIDEHKG 105
            P G+  + +  D+ +AD      Q+   EG    Q              N + +  + G
Sbjct: 31  EPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG 89

Query: 106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTF 165
            I  T+ S + Q + +       ++ G+ ++              L    GV +      
Sbjct: 90  DIIVTERSPTHQIQIY-------NQYGQFVR--------KFGATILQHPRGVTVDNKG-R 133

Query: 166 ILIAETSNCRILRFWLHGPNSGKQDVFAELPGF--PDNVRSNSNGEFWVA 213
           I++ E    R++ F     N      F        P+ V  N   E +++
Sbjct: 134 IIVVECKVMRVIIF---DQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 19/140 (13%)

Query: 47  GRPLGIRFDKKTGDLYIADAYLGF-QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG 105
           G P GI  D     ++  D+ L   +V   +G     L       P      +  D  +G
Sbjct: 79  GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNP----RGIVTDPVRG 134

Query: 106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTF 165
            +Y+TD +    +      I +    G        T    +    L   NG+      + 
Sbjct: 135 NLYWTDWNRDNPK------IETSHMDG--------TNRRILAQDNLGLPNGLTFDAFSSQ 180

Query: 166 ILIAETSNCRILRFWLHGPN 185
           +   +    R        P 
Sbjct: 181 LCWVDAGTHRAECLNPAQPG 200

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 26/135 (19%)

Query: 48  RPLGIRFDKKTGDLYIADAYLGFQVV---GPEGGLATQLVTEAAGQPLRFTNDLDIDEHK 104
            P GI  D   G+LY  D       +     +G     L  +  G P    N L  D   
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP----NGLTFDAFS 178

Query: 105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRT 164
             + + D+                  T R             +L+GL +   V       
Sbjct: 179 SQLCWVDA-----------------GTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGK-- 219

Query: 165 FILIAETSNCRILRF 179
            +   +     ++  
Sbjct: 220 NLYYTDWKTNSVIAM 234

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 47  GRPLGIRFDKKTGDLYIADAYLGF-QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG 105
             P G+  D    ++Y  D+ LG   V   +G     L  E   +P      + +D   G
Sbjct: 77  QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP----RAIVVDPVHG 132

Query: 106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTF 165
            +Y+TD  T        + I  G   G            +++ + + + NG+ L      
Sbjct: 133 FMYWTDWGTP-------AKIKKGGLNG--------VDIYSLVTENIQWPNGITLDLLSGR 177

Query: 166 ILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFW 211
           +   ++    I    ++G N        +    P ++    +  FW
Sbjct: 178 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFW 223

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 22/185 (11%)

Query: 3   YTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLY 62
           Y    D R  K  G E           ++    R     + +     + + F  +   ++
Sbjct: 29  YELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVF 88

Query: 63  IADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF 121
            +D  L         G    ++V+     P      L +D     +Y+TDS T       
Sbjct: 89  WSDVTLDRILRANLNGSNVEEVVSTGLESP----GGLAVDWVHDKLYWTDSGT------- 137

Query: 122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET-SNCRILRFW 180
            S I   +  G   K         +L Q L     +AL      I   +  +  RI    
Sbjct: 138 -SRIEVANLDGAHRK--------VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188

Query: 181 LHGPN 185
           + G  
Sbjct: 189 MDGSG 193

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 20/136 (14%)

Query: 47  GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG 105
            +   I +  +   + I +      +         +           +  N  +     G
Sbjct: 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPING 238

Query: 106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL--LQGLAFANGVALSRDR 163
            +YF   +                  G++ +Y+ TT+E T L  +Q   +   +      
Sbjct: 239 ELYFNSWNA-----------------GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG 281

Query: 164 TFILIAETSNCRILRF 179
            +  I   +   ILR 
Sbjct: 282 NYAYIVVVNQHYILRS 297

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 25/179 (13%)

Query: 47  GRPLGIRFDKKTGDLYIADAYLGF--QVVGPEG------GLATQLVTEAAGQPLRFTNDL 98
            +P  +  +  TG ++++D Y         P G      G  +   +   GQ     + L
Sbjct: 143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQ-FSVPHSL 201

Query: 99  DIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA 158
            +  H   +   D      R Q            +    E         +  +++  G  
Sbjct: 202 ALVPHLDQLCVADRENG--RIQCF------KTDTKEFVREIKHASFGRNVFAISYIPGFL 253

Query: 159 LSRDRTFILIAETSNCRILRFWLHGPNSGK-QDVFAELPG---FPDNVRSNSNGEFWVA 213
            + +       +    +         +SG+  DVF  +      P ++ ++ +G  ++ 
Sbjct: 254 FAVN-GKPYFGDQEPVQGFVM---NFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG 308

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 20/141 (14%)

Query: 48  RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGG-LATQLVTEAAGQP---LRFTNDLDIDE 102
            P  +        L +AD   G  Q    +      ++   + G+    + +        
Sbjct: 197 VPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFA- 255

Query: 103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD 162
             G  YF D      +   M+       +G ++   K  +      +     + +  S D
Sbjct: 256 VNGKPYFGDQEPV--QGFVMNF-----SSGEIIDVFKPVR------KHFDMPHDIVASED 302

Query: 163 RTFILIAETSNCRILRFWLHG 183
            T + I +     + +F L  
Sbjct: 303 GT-VYIGDAHTNTVWKFTLTE 322

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 22/140 (15%)

Query: 46  CGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK 104
               + I +D   G +Y  D  +   +    +G  +  +VT     P    + + +D   
Sbjct: 348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP----DGIAVDWVA 403

Query: 105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRT 164
             +Y+TD+ T          I      G        T    ++ + L     + L     
Sbjct: 404 RNLYWTDTGT--------DRIEVTRLNG--------TMRKILISEDLEEPRAIVLDPMVG 447

Query: 165 FILIAET-SNCRILRFWLHG 183
           ++   +     +I R  L G
Sbjct: 448 YMYWTDWGEIPKIERAALDG 467

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.97
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.92
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.87
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.83
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.81
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.8
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.79
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.78
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.76
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.75
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.75
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.73
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.73
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.72
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.72
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.71
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.71
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.68
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.68
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.67
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.65
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.64
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.64
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.63
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.62
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.61
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.58
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.53
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.5
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.5
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.5
3ott_A	758	Two-component system sensor histidine kinase; beta	99.49
3ott_A	758	Two-component system sensor histidine kinase; beta	99.48
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.47
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.47
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.44
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.44
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.43
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.42
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.41
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.41
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.39
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.37
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.37
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.35
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.35
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.34
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.32
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.31
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.29
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.28
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.28
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.28
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.28
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.27
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.27
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.25
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.21
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.19
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.18
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.16
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.15
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.15
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.12
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.09
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.08
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.07
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.07
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.07
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.06
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.04
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.04
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.02
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.01
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.0
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.99
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.99
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.99
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.99
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.99
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.92
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.91
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.91
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.87
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.87
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.85
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.83
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.81
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.8
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.79
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.78
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.78
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.78
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.76
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.76
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.74
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.74
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.73
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.73
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.72
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.71
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.71
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.69
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.69
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.69
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.66
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.66
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.66
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.65
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.65
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.64
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.64
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.63
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.63
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.63
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.61
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.61
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.61
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.6
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.6
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.59
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.57
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.57
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.56
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.56
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.56
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.55
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.55
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.55
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.54
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.52
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.52
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.5
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.5
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.5
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.5
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.49
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.49
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.49
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.48
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.48
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.46
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.46
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.46
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.44
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.44
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.44
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.43
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.41
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.41
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.39
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.39
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.38
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.38
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.36
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.36
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.36
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.34
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.34
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.33
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.32
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.31
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.31
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.29
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.29
3jro_A	753	Fusion protein of protein transport protein SEC13	98.29
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.28
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.28
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.27
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.27
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.27
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.26
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.26
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.25
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.25
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.22
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.21
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.21
2pm7_B	297	Protein transport protein SEC13, protein transport	98.21
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.18
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.16
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.16
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.13
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.13
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.12
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.1
3jro_A	753	Fusion protein of protein transport protein SEC13	98.08
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.08
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.05
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.03
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.03
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.02
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.02
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.01
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.99
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.99
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.99
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.97
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.94
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.93
2pm7_B	297	Protein transport protein SEC13, protein transport	97.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.86
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.86
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.85
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.83
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.81
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.81
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.79
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.78
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.76
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.75
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.75
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.68
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.68
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.57
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.56
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.56
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.47
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.45
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.38
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.37
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.29
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.26
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.25
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.25
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.23
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.23
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.14
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	97.11
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.02
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.02
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	97.01
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.0
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.96
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.85
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.82
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.66
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.62
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.61
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.29
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.85
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	95.82
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.77
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.88
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.82
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.27
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.03
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.66
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.39
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.29
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.46
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.43
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.96
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.94
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	91.73
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.53
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	91.42
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.42
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.96
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	90.95
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.87
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.72
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	85.96
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	81.59

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.97  E-value=1.2e-28  Score=215.09  Aligned_cols=266  Identities=32%  Similarity=0.598  Sum_probs=198.2

Q ss_pred             EEEeCCCCC-eEEEEEeccccccccCCCCCccc--------------------cccceeceEEEeCCCCcEEEEECCCce
Q 046018           12 LKWQGDELG-WTEFAVTTSQRKECVRPFAPDIE--------------------HICGRPLGIRFDKKTGDLYIADAYLGF   70 (310)
Q Consensus        12 ~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~p~gl~~d~~~g~l~v~~~~~gi   70 (310)
                      ..|+++..- |++.....+.+++..+..+..+.                    .....|.||++++++|+|||++..++|
T Consensus        24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i  103 (322)
T 2fp8_A           24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHL  103 (322)
T ss_dssp             EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCE
Confidence            446665443 88777777888877653322211                    123579999999647899999988889


Q ss_pred             EEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018           71 QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ  149 (310)
Q Consensus        71 ~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  149 (310)
                      +++|++++.++.+.....+.+...|++|++++ +|+ +||++....+....+...+......+.|+++|+++++.+.+..
T Consensus       104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  182 (322)
T 2fp8_A          104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK  182 (322)
T ss_dssp             EEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE
T ss_pred             EEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc
Confidence            99999877666664433344556899999999 999 9999975433222222333334456889999998888877666


Q ss_pred             CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc
Q 046018          150 GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS  229 (310)
Q Consensus       150 ~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~  229 (310)
                      .+..|+||++++|++.||++++.+++|++|++++...+..+.+...++ |++|++|++|+|||+++.....    .    
T Consensus       183 ~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~----~----  253 (322)
T 2fp8_A          183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG----N----  253 (322)
T ss_dssp             EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS----S----
T ss_pred             CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc----c----
Confidence            678899999999999999999999999999998654444555555666 9999999999999999874421    0    


Q ss_pred             ccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          230 WLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       230 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                                 |.         ......+.+++++|+++..+..++|..+..++.++..+++||+++..+++|.+|++
T Consensus       254 -----------~~---------~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          254 -----------MH---------GRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             -----------TT---------SCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC
T ss_pred             -----------cc---------CCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEec
Confidence                       00         01134678899999999998877776667788887789999999999999999986

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.94  E-value=5.9e-25  Score=192.26  Aligned_cols=230  Identities=19%  Similarity=0.221  Sum_probs=167.3

Q ss_pred             ceeceEEEeCC-CC--cEEEEECCCc-----eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           47 GRPLGIRFDKK-TG--DLYIADAYLG-----FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        47 ~~p~gl~~d~~-~g--~l~v~~~~~g-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      -+|+||.+..+ +|  +|||+++..+     |++++++++..+.+ ....+.+...||+++++++|+ +|++++...-..
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~-~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~  189 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDP  189 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEECCTTCSSEEEEEEEETTE-EEEEESCSCSSH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE-eccccCCCCCCceEEEeCCCC-EEecCCcEeCCc
Confidence            48999998552 34  6999998742     88889987766544 444566788999999999999 999986421111


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC-CCCCcceeeeeCCC
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG-PNSGKQDVFAELPG  197 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~  197 (310)
                      .....+.+.+...|.|+++++.  +.+.+..++..||||+++||+++||++++..++|++|+.+. +..+..+.+ ..++
T Consensus       190 ~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g  266 (355)
T 3sre_A          190 YLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDT  266 (355)
T ss_dssp             HHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSS
T ss_pred             ccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCC
Confidence            1112223334567899999984  56667788889999999999999999999999999999874 233333444 5678


Q ss_pred             CCCeeEECC-CCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEEC----CCCCEEEEEE
Q 046018          198 FPDNVRSNS-NGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLS----EKGEVLEVLE  272 (310)
Q Consensus       198 ~p~~i~~d~-~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~g~~~~~~~  272 (310)
                      .|||+++|+ +|+||+|...++..    +.++++..                    .....+.++.    .++++.+.+.
T Consensus       267 ~PDGi~vD~e~G~lwva~~~~g~~----v~~~~P~~--------------------~~~s~v~rI~~~~~~~~~v~~v~~  322 (355)
T 3sre_A          267 LVDNISVDPVTGDLWVGCHPNGMR----IFFYDAEN--------------------PPGSEVLRIQDILSEEPKVTVVYA  322 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEESCHHH----HHSCCTTS--------------------CCCEEEEEEECTTSSSCEEEEEEE
T ss_pred             CCceEEEeCCCCcEEEEecCCceE----EEEECCCC--------------------CCCCEEEEEEccCCCCcEEEEEEE
Confidence            999999999 59999988644432    44444431                    0011233433    4567777887


Q ss_pred             cCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          273 DCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       273 ~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      + +|..+...|.++..+|+||+|++..+ +..|++
T Consensus       323 d-dG~~l~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          323 E-NGTVLQGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             E-CSSSCCSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             c-CCCEEEeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence            6 88888888888889999999999777 777764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.92  E-value=5.9e-24  Score=183.32  Aligned_cols=238  Identities=14%  Similarity=0.155  Sum_probs=173.9

Q ss_pred             CcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEe
Q 046018            8 DGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVT   85 (310)
Q Consensus         8 ~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~   85 (310)
                      -+.-+.|+++.+.  |++.....++++++.+... ........|.++++++ +|+||++. ..+|+++|+++++++.+..
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVATI-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEEE-CCeEEEEECCCCcEEEEEe
Confidence            3467889987666  8888888899998876442 2222346788999999 88999997 4689999999998877655


Q ss_pred             ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCe
Q 046018           86 EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTF  165 (310)
Q Consensus        86 ~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~  165 (310)
                      ...+.+...+++++++++|+ +|++++......      .......+.|++++++ ++...+......|+|++++||++.
T Consensus        91 ~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~------~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAP------AVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSC-EEEEEEECCSBT------TBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCE
T ss_pred             cCCCCCCCCCCCEEECCCCC-EEEecCCccccc------ccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCE
Confidence            43344456789999999999 999984311000      0001235789999986 556656666778999999999999


Q ss_pred             EEEEecCCceEEEEEcc--CCCCCcceeeeeC---CCCCCeeEECCCCCEEEEEecCCccceeeeeecccc-ccEEeecc
Q 046018          166 ILIAETSNCRILRFWLH--GPNSGKQDVFAEL---PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWL-GKTLLKLP  239 (310)
Q Consensus       166 lyv~~~~~~~i~~~~~~--~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~-g~~~~~~~  239 (310)
                      ||++++.+++|++|+.+  .+.....+.+...   ++.|+++++|++|+||++++.++.     |.++++. |+.+..++
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-----v~~~d~~tG~~~~~i~  237 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-----VIRLDPVTGKRLQTVK  237 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-----EEEECTTTCCEEEEEE
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-----EEEEcCCCceEEEEEE
Confidence            99999999999999874  2322223444443   367999999999999999998775     6666664 88888888


Q ss_pred             chhhhhcccccCCCC-ceEEEEE
Q 046018          240 LSFRQLHSLLVGGKP-HATAIKL  261 (310)
Q Consensus       240 ~~~~~~~~~~~~~~~-~~~~~~~  261 (310)
                      .|...+++++|++++ ..+++.-
T Consensus       238 ~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          238 LPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             CSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCCCceEEEEeCCCCCEEEEEc
Confidence            877677777776443 3444443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.91  E-value=6.9e-22  Score=169.92  Aligned_cols=202  Identities=13%  Similarity=0.158  Sum_probs=146.3

Q ss_pred             cCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEE
Q 046018            7 ADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQL   83 (310)
Q Consensus         7 ~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~   83 (310)
                      ....-..|+++.+.  |++....++.++++.+. +..+......|.+|++++ +|+||+++.. .+|.++|+++++++.+
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~  105 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESI  105 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence            34466789988773  88888888999988775 344444556789999999 8999999986 5799999987877666


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh-hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS-SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD  162 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~-~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d  162 (310)
                      .....+.+...|++++++++|+ +|++++..... ..... ........+.|++++++ ++.+.+......|++++++||
T Consensus       106 ~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~-~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          106 ADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGID-KPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPS  182 (296)
T ss_dssp             ECEETTEECCCCCCEEECTTSC-EEEEECSHHHH-CGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTT
T ss_pred             eeccCCCCCCCCCCEEECCCCC-EEEECCccccc-cccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCC
Confidence            5443444556799999999999 99987521000 00000 00001124689999998 777777777788999999999


Q ss_pred             CCeEEEEecCCceEEEEEccC-CCC-CcceeeeeCCCCCCeeEECCCCCEEEEE
Q 046018          163 RTFILIAETSNCRILRFWLHG-PNS-GKQDVFAELPGFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~-~~~-~~~~~~~~~~~~p~~i~~d~~G~l~va~  214 (310)
                      ++.| ++++..++|++|+++. +.. .....+....+.|+++++|++|+||+++
T Consensus       183 g~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          183 GNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             SCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             CCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence            9977 8889899999999862 222 2223441134679999999999999999

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.1e-22  Score=174.23  Aligned_cols=203  Identities=17%  Similarity=0.205  Sum_probs=145.8

Q ss_pred             ccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEE
Q 046018            6 VADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQ   82 (310)
Q Consensus         6 ~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~   82 (310)
                      ..-..-+.|+++.+.  |++.....+.+++..+. ...+......|.++++++ +|+||+++.. .+|.+++++ ++++.
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~  120 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHL  120 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEE
Confidence            334466788887764  88877788888877542 233344456789999999 8999999987 579999997 66666


Q ss_pred             EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh-hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec
Q 046018           83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI-LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR  161 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~-~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~  161 (310)
                      +.....+.+...|++++++++|+ +|+++...... ..+.... ......+.|+++|+++++++.+. ....|+|++++|
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~-~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~sp  197 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLR-KPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSP  197 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSC-EEEECCSGGGS-CGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECT
T ss_pred             EEeccCCCccCCCCCEEECCCCC-EEEeCcCCCcc-ccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcC
Confidence            65444455567899999999999 99987531000 0000000 00112467999999888877766 677899999999


Q ss_pred             CCCeEEEEecCC-----ceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEE
Q 046018          162 DRTFILIAETSN-----CRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       162 d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~  214 (310)
                      |++.||++++..     +.|++|+.++........+.. ..+.|+++++|++|+||+++
T Consensus       198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~  256 (305)
T 3dr2_A          198 DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS  256 (305)
T ss_dssp             TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC
T ss_pred             CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec
Confidence            999999998863     799999987543333334433 35789999999999999997

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.87  E-value=3.8e-20  Score=159.78  Aligned_cols=205  Identities=17%  Similarity=0.261  Sum_probs=139.2

Q ss_pred             cEEEEEeCCCCCeEE--------EEEeccccccccCCCCCcccc-----ccceeceEEEeCCC-CcEEEEECCCceEEEe
Q 046018            9 GRILKWQGDELGWTE--------FAVTTSQRKECVRPFAPDIEH-----ICGRPLGIRFDKKT-GDLYIADAYLGFQVVG   74 (310)
Q Consensus         9 ~~i~~~~~~~~~W~~--------~~~~~~~~~~~~~~~~~~~~~-----~~~~p~gl~~d~~~-g~l~v~~~~~gi~~~d   74 (310)
                      ..-..|+++..-|+.        ....++.++++.+.++..+..     ....|.++++++ + |+||+++...+|+++|
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~~~~l~~~d   98 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEEE
T ss_pred             ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEECCCCEEEEe
Confidence            345667754433775        566778888865544333222     235788999999 6 9999999877899999


Q ss_pred             CCCCeEEEE-EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcc
Q 046018           75 PEGGLATQL-VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAF  153 (310)
Q Consensus        75 ~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~  153 (310)
                      ++ ++++.+ .......+...+++|+++++|+ +|+++.........+  ........+.|++++++ ++.+.+......
T Consensus        99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (314)
T 1pjx_A           99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQMIQVDTAFQF  173 (314)
T ss_dssp             TT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred             CC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccc--cccccCCCCeEEEECCC-CCEEEeccCCCC
Confidence            99 776554 3322223345799999999999 999985420000000  00001124689999987 666665555667


Q ss_pred             cceEEEe----cCCCeEEEEecCCceEEEEEcc-CCCCCcceeeeeCC----CCCCeeEECCCCCEEEEEecCCc
Q 046018          154 ANGVALS----RDRTFILIAETSNCRILRFWLH-GPNSGKQDVFAELP----GFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       154 ~~gi~~~----~d~~~lyv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~----~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      |++++++    +|++.||+++..+++|++|+.+ .+.......+...+    +.|+++++|++|+||+++...+.
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            8999999    9998899998888999999976 22222222333333    56899999999999999876553

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.86  E-value=3.6e-20  Score=161.74  Aligned_cols=220  Identities=15%  Similarity=0.141  Sum_probs=156.3

Q ss_pred             cEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEee
Q 046018            9 GRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTE   86 (310)
Q Consensus         9 ~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~   86 (310)
                      +.-+.|+++.+.  |++....+|.++++.+.+.... .....+.++++++ +|++|++. ..+|+++|+++++++.+...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~-dg~l~v~~-~~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKIS-DSKQLIAS-DDGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEE-TTEEEEEE-TTEEEEEETTTCCEEEEECS
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeC-CCeEEEEE-CCCEEEEECCCCcEEEEeeC
Confidence            356789987665  8888888899998876432222 2235688999999 89999997 45799999988887666433


Q ss_pred             cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE
Q 046018           87 AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI  166 (310)
Q Consensus        87 ~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l  166 (310)
                      ....+...+++++++++|+ +|+++....           .....+.|++++  +++.+.+......+++++++||++.|
T Consensus       128 ~~~~~~~~~~~i~~d~~G~-l~v~~~~~~-----------~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGA-LWIGTMGRK-----------AETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTG  193 (326)
T ss_dssp             STTCTTEEEEEEEECTTSC-EEEEEEETT-----------CCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEE
T ss_pred             CCCCCCCCCCCEEECCCCC-EEEEeCCCc-----------CCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEE
Confidence            2222345689999999999 999874210           011357899999  47776665555678999999999999


Q ss_pred             EEEecCCceEEEEEcc--CC-CCCcceeeeeC---CCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          167 LIAETSNCRILRFWLH--GP-NSGKQDVFAEL---PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       167 yv~~~~~~~i~~~~~~--~~-~~~~~~~~~~~---~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      |++++..++|++|+.+  ++ .......+...   .+.|+++++|++|+||++++.++.     |.+++++++.+..+..
T Consensus       194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-----v~~~d~~g~~~~~i~~  268 (326)
T 2ghs_A          194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-----VDRYDTDGNHIARYEV  268 (326)
T ss_dssp             EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-----EEEECTTCCEEEEEEC
T ss_pred             EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-----EEEECCCCCEEEEEEC
Confidence            9999888999999986  33 33333344332   357899999999999999987654     5666667776666655


Q ss_pred             hhhhhccccc
Q 046018          241 SFRQLHSLLV  250 (310)
Q Consensus       241 ~~~~~~~~~~  250 (310)
                      +...+.++++
T Consensus       269 ~~~~~~~~af  278 (326)
T 2ghs_A          269 PGKQTTCPAF  278 (326)
T ss_dssp             SCSBEEEEEE
T ss_pred             CCCCcEEEEE
Confidence            5433444433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=2.3e-18  Score=150.43  Aligned_cols=234  Identities=17%  Similarity=0.255  Sum_probs=159.7

Q ss_pred             ccccceeceEEEeCCCCcEEEEECCC-------------------------ceEEEeCCCCeEEEEEeecCCccccCCcc
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAYL-------------------------GFQVVGPEGGLATQLVTEAAGQPLRFTND   97 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~~-------------------------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~   97 (310)
                      ....+.|.+|++++ +|+||+++...                         .|+++|++++++.....   ......|++
T Consensus        20 ~~~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~p~g   95 (329)
T 3fvz_A           20 YLLPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG---KNLFYLPHG   95 (329)
T ss_dssp             GCCCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC---TTTCSSEEE
T ss_pred             ceecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC---CCccCCceE
Confidence            34457899999999 89999999875                         38999998777643321   234457999


Q ss_pred             eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC--eEEEEe---------cCCcccceEEEecCCCeE
Q 046018           98 LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK--EVTILL---------QGLAFANGVALSRDRTFI  166 (310)
Q Consensus        98 i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~~~~~~---------~~~~~~~gi~~~~d~~~l  166 (310)
                      |+++++|+ +|+++..                 .++|++|++++.  ....+.         ..+..|++|+++|+++.|
T Consensus        96 ia~d~~g~-l~v~d~~-----------------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l  157 (329)
T 3fvz_A           96 LSIDTDGN-YWVTDVA-----------------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV  157 (329)
T ss_dssp             EEECTTSC-EEEEETT-----------------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE
T ss_pred             EEECCCCC-EEEEECC-----------------CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeE
Confidence            99999999 9999964                 678999998754  233332         223469999999943449


Q ss_pred             EEEec-CCceEEEEEccCCCCCcceeeeeC-------C---CCCCeeEECCC-CCEEEEEecCCccceeeeeecccc-cc
Q 046018          167 LIAET-SNCRILRFWLHGPNSGKQDVFAEL-------P---GFPDNVRSNSN-GEFWVALHAKKGLFGKLILLNSWL-GK  233 (310)
Q Consensus       167 yv~~~-~~~~i~~~~~~~~~~~~~~~~~~~-------~---~~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~~~~-g~  233 (310)
                      |++++ .+++|.+|+.++...   ..+...       +   ..|.++++|++ |+|||++..++.     |..++.. |+
T Consensus       158 yv~d~~~~~~I~~~~~~g~~~---~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-----I~~~~~~~G~  229 (329)
T 3fvz_A          158 FVSDGYCNSRIVQFSPSGKFV---TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-----IQCFKTDTKE  229 (329)
T ss_dssp             EEEECSSCCEEEEECTTSCEE---EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-----EEEEETTTCC
T ss_pred             EEEeCCCCCeEEEEcCCCCEE---EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-----EEEEECCCCc
Confidence            99997 689999999765321   112110       0   24899999998 899999988776     5666655 88


Q ss_pred             EEeeccchh--hhhcccc--------------cCCCCceEEEEEC-CCCCEEEEEEcCCCCeecceeEEEEe-CCEEEEe
Q 046018          234 TLLKLPLSF--RQLHSLL--------------VGGKPHATAIKLS-EKGEVLEVLEDCEGKTLSFISEVEEK-DGQLWMG  295 (310)
Q Consensus       234 ~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~~~d-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~vg  295 (310)
                      .+..+..+.  ..+..+.              +.......+..++ .+|+++..+.. ....+..+..++.. +|.||++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~~p~~ia~~~dG~lyva  308 (329)
T 3fvz_A          230 FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-VRKHFDMPHDIVASEDGTVYIG  308 (329)
T ss_dssp             EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-SSSCCSSEEEEEECTTSEEEEE
T ss_pred             EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-CCCccCCeeEEEECCCCCEEEE
Confidence            777664321  1111111              1111122344455 45777766632 12334567777654 6799999


Q ss_pred             cCCCCeEEEecc
Q 046018          296 SVLMPFIGIYNR  307 (310)
Q Consensus       296 s~~~~~i~~~~~  307 (310)
                      ...+++|.++++
T Consensus       309 d~~~~~I~~~~~  320 (329)
T 3fvz_A          309 DAHTNTVWKFTL  320 (329)
T ss_dssp             ESSSCCEEEEEE
T ss_pred             ECCCCEEEEEeC
Confidence            999999999986

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.83  E-value=1.1e-18  Score=150.85  Aligned_cols=211  Identities=17%  Similarity=0.139  Sum_probs=148.1

Q ss_pred             EEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-Cc--eEEEeCCCCeEEEEEee
Q 046018           11 ILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-LG--FQVVGPEGGLATQLVTE   86 (310)
Q Consensus        11 i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-~g--i~~~d~~~~~~~~~~~~   86 (310)
                      -..|+++..- |++.....+.++++.+.. .........|++|++++ +|+|||++.. ++  |++++..+++++.+...
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~  113 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTL  113 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEEeC
Confidence            3456664333 454455677888876632 22333446899999999 8899999965 23  89999888887666543


Q ss_pred             cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE-----------ecCCcccc
Q 046018           87 AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL-----------LQGLAFAN  155 (310)
Q Consensus        87 ~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-----------~~~~~~~~  155 (310)
                      .   ....+++++..+++. +|+++..                 .+.|+++|+.+++.+..           ...+..|+
T Consensus       114 ~---~~~~~~g~~~~~~~~-~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn  172 (306)
T 2p4o_A          114 P---DAIFLNGITPLSDTQ-YLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  172 (306)
T ss_dssp             T---TCSCEEEEEESSSSE-EEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             C---CccccCcccccCCCc-EEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence            2   234577888877776 9999853                 67899999976543332           12345689


Q ss_pred             eEEEecCCCeEEEEecCCceEEEEEccC-CCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccE
Q 046018          156 GVALSRDRTFILIAETSNCRILRFWLHG-PNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKT  234 (310)
Q Consensus       156 gi~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~  234 (310)
                      ||  ++|+++||++++.+++|++|+.++ +..+..+.+... ..|++|++|++|+|||+++.++.     |.++++.|+.
T Consensus       173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~-----V~~~~~~G~~  244 (306)
T 2p4o_A          173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNS-----VVRIAPDRST  244 (306)
T ss_dssp             EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCC-----EEEECTTCCE
T ss_pred             Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCe-----EEEECCCCCE
Confidence            98  889989999999999999999875 333344444443 46999999999999999998776     6667777776


Q ss_pred             --EeeccchhhhhcccccCC
Q 046018          235 --LLKLPLSFRQLHSLLVGG  252 (310)
Q Consensus       235 --~~~~~~~~~~~~~~~~~~  252 (310)
                        +..++.+...|+++++++
T Consensus       245 ~~~~~~~~~~~~p~~~a~~g  264 (306)
T 2p4o_A          245 TIIAQAEQGVIGSTAVAFGQ  264 (306)
T ss_dssp             EEEECGGGTCTTEEEEEECC
T ss_pred             EEEeecccccCCceEEEEec
Confidence              334555555666666653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.81  E-value=8.1e-18  Score=152.21  Aligned_cols=250  Identities=10%  Similarity=0.053  Sum_probs=158.8

Q ss_pred             EEEEEeCC--CCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-----CceEEEeCCCCeEE
Q 046018           10 RILKWQGD--ELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-----LGFQVVGPEGGLAT   81 (310)
Q Consensus        10 ~i~~~~~~--~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-----~gi~~~d~~~~~~~   81 (310)
                      .-..|+++  .+. |+.-....+.++++.+.....+......|.+|++++ +|+||+++..     .+++.++..++...
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred             ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCeec
Confidence            34567764  233 553332566777775533333344557899999999 8889999973     35777776544321


Q ss_pred             EEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE-EEEec--CCcccceE
Q 046018           82 QLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV-TILLQ--GLAFANGV  157 (310)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~--~~~~~~gi  157 (310)
                      .. ..   .....|+++++++ +|+ |||++..                 .++|++++++++.. ..+..  ....+.+|
T Consensus       221 ~~-~~---~~~~~P~giavd~~~G~-lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i  278 (433)
T 4hw6_A          221 RL-SL---CNARGAKTCAVHPQNGK-IYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTKGSNFHI  278 (433)
T ss_dssp             EE-EE---EECSSBCCCEECTTTCC-EEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred             cc-cc---cccCCCCEEEEeCCCCe-EEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence            11 11   1345899999999 788 9999854                 67899999987766 33332  22345689


Q ss_pred             EEecCCCeEEEEecCCceEEEEEccC--CCCCcceeeeeC---------------CCCCCeeEE---------CCCCCEE
Q 046018          158 ALSRDRTFILIAETSNCRILRFWLHG--PNSGKQDVFAEL---------------PGFPDNVRS---------NSNGEFW  211 (310)
Q Consensus       158 ~~~~d~~~lyv~~~~~~~i~~~~~~~--~~~~~~~~~~~~---------------~~~p~~i~~---------d~~G~l~  211 (310)
                      +++|++++||++++.+++|++++.++  +.......+...               -..|.++++         |++|+||
T Consensus       279 a~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly  358 (433)
T 4hw6_A          279 VWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY  358 (433)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence            99999999999999999999999773  222211222211               135888999         9999999


Q ss_pred             EEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEEe--C
Q 046018          212 VALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK--D  289 (310)
Q Consensus       212 va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~--~  289 (310)
                      |++..++.     |.+++++|........+.    .+              ..|. ..- ..+....+..+..++..  +
T Consensus       359 vaD~~n~~-----I~~~~~~G~v~t~~G~g~----~~--------------~~G~-~dG-~~~~~~~~~~P~giavd~~~  413 (433)
T 4hw6_A          359 FCDRDSHT-----VRVLTPEGRVTTYAGRGN----SR--------------EWGY-VDG-ELRSQALFNHPTSIAYDMKR  413 (433)
T ss_dssp             EEETTTTE-----EEEECTTSEEEEEECCCT----TC--------------SSCC-BCE-ETTTTCBCSSEEEEEEETTT
T ss_pred             EEECCCCE-----EEEECCCCCEEEEEeCCC----CC--------------cccc-CCC-ccccccEeCCCcEEEEECCC
Confidence            99988775     344444443222211100    00              0000 000 00111246678888765  7


Q ss_pred             CEEEEecCCCCeEEEecc
Q 046018          290 GQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       290 g~l~vgs~~~~~i~~~~~  307 (310)
                      |.|||+...+++|.++++
T Consensus       414 g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          414 KCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TEEEEEEGGGTEEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEec
Confidence            999999999999999875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.81  E-value=1.1e-17  Score=147.20  Aligned_cols=169  Identities=17%  Similarity=0.165  Sum_probs=125.2

Q ss_pred             eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCC
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG  105 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~  105 (310)
                      ..+.+++..+...+.+......|.+|++|+.++.||+++... .|++++++++..+.+...    ....|.+|++|+.++
T Consensus        53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g  128 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----GLESPGGLAVDWVHD  128 (349)
T ss_dssp             SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SCSCCCEEEEETTTT
T ss_pred             cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----CCCCccEEEEecCCC
Confidence            445666666644344444557799999997689999999874 599999998765544322    335789999998555


Q ss_pred             EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCC-ceEEEEEccC
Q 046018          106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSN-CRILRFWLHG  183 (310)
Q Consensus       106 ~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~~~~~~  183 (310)
                      .||+++..                 .++|.++++++...+.+. ..+..|++|+++|+++.|||++..+ ++|+++++++
T Consensus       129 ~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          129 KLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             EEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence            59999954                 568999998865444444 4567899999999888899999988 9999999986


Q ss_pred             CCCCcceeee-eCCCCCCeeEECC-CCCEEEEEecCCc
Q 046018          184 PNSGKQDVFA-ELPGFPDNVRSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       184 ~~~~~~~~~~-~~~~~p~~i~~d~-~G~l~va~~~~~~  219 (310)
                      ..   ...+. ..-..|+++++|+ +++||+++...+.
T Consensus       192 ~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~  226 (349)
T 3v64_C          192 SG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  226 (349)
T ss_dssp             CS---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CC---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence            42   22222 2235699999995 6789999877653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.80  E-value=2.2e-17  Score=147.37  Aligned_cols=169  Identities=17%  Similarity=0.165  Sum_probs=125.9

Q ss_pred             eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCC
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG  105 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~  105 (310)
                      ..|.+++..+.....+......|.+|++|+.++.||+++... .|++++++++..+.+...    ....|.+|++|+.++
T Consensus        96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g  171 (386)
T 3v65_B           96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----GLESPGGLAVDWVHD  171 (386)
T ss_dssp             SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----SCSCCCCEEEETTTT
T ss_pred             ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----CCCCccEEEEEeCCC
Confidence            455666666644444455567899999997688999999874 599999998766554332    345799999998655


Q ss_pred             EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCC-ceEEEEEccC
Q 046018          106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSN-CRILRFWLHG  183 (310)
Q Consensus       106 ~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~~~~~~  183 (310)
                      .||+++..                 .++|.++++++...+.+. ..+..|++|+++|+++.|||++... ++|+++++++
T Consensus       172 ~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          172 KLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             EEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            59999964                 568999998765444443 4567899999999888899999888 8999999986


Q ss_pred             CCCCcceeee-eCCCCCCeeEECC-CCCEEEEEecCCc
Q 046018          184 PNSGKQDVFA-ELPGFPDNVRSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       184 ~~~~~~~~~~-~~~~~p~~i~~d~-~G~l~va~~~~~~  219 (310)
                      ..   ...+. .....|++|++|+ +++||+++...+.
T Consensus       235 ~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          235 SG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             CS---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             CC---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence            42   22232 2235699999994 6789999877653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.80  E-value=3.4e-17  Score=142.27  Aligned_cols=151  Identities=11%  Similarity=0.145  Sum_probs=110.6

Q ss_pred             ccceeceEEEeCCCCcEEEEECCC-ceEEEeCCC----CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEG----GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~----~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      ....|.|+++++.+++||+++... .|+++++++    ...+.+..    .....|.+|++|+.++.||+++..      
T Consensus        28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavd~~~~~ly~~d~~------   97 (316)
T 1ijq_A           28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV------   97 (316)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCEEEEETTTTEEEEEETT------
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCCCCcCEEEEeecCCeEEEEECC------
Confidence            346899999998678999999874 599999886    22222321    134579999999754449999854      


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCC-ceEEEEEccCCCCCcceeeee-CC
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSN-CRILRFWLHGPNSGKQDVFAE-LP  196 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~  196 (310)
                                 .++|.++++++...+.+. ..+..|++|+++|+++.|||++... ++|+++++++..   ...+.. .-
T Consensus        98 -----------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~~~~~~~~  163 (316)
T 1ijq_A           98 -----------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENI  163 (316)
T ss_dssp             -----------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSC
T ss_pred             -----------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eEEEEECCC
Confidence                       678999999866555544 3567899999999888899999875 899999998642   222322 23


Q ss_pred             CCCCeeEECCC-CCEEEEEecCCc
Q 046018          197 GFPDNVRSNSN-GEFWVALHAKKG  219 (310)
Q Consensus       197 ~~p~~i~~d~~-G~l~va~~~~~~  219 (310)
                      ..|+++++|++ ++||+++...+.
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~  187 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHS  187 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeccCCEEEEEECCCCe
Confidence            57999999964 689999876653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.80  E-value=7.4e-18  Score=146.86  Aligned_cols=211  Identities=18%  Similarity=0.220  Sum_probs=145.9

Q ss_pred             EEEEeCCCCCeE-EEEEeccccccccCCCCCccc-cccceeceEEEeCCCCcEEEEECCC-----ceEEEeCCCCeEEEE
Q 046018           11 ILKWQGDELGWT-EFAVTTSQRKECVRPFAPDIE-HICGRPLGIRFDKKTGDLYIADAYL-----GFQVVGPEGGLATQL   83 (310)
Q Consensus        11 i~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~~g~l~v~~~~~-----gi~~~d~~~~~~~~~   83 (310)
                      -..|+++..-|+ +....++.+++..+.++..+. .....|.+|++++ +|+||++....     +|+++|+++++++.+
T Consensus        49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~  127 (333)
T 2dg1_A           49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDI  127 (333)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence            445665443364 455667888887764433332 2346789999999 89999998765     699999998876644


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDR  163 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~  163 (310)
                      ...  ......+++++++++|+ +|+++....           .....+.|+++++++++.+.+......|++++++||+
T Consensus       128 ~~~--~~~~~~~~~i~~d~~g~-l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          128 IED--LSTAYCIDDMVFDSKGG-FYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             ECS--SSSCCCEEEEEECTTSC-EEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             Ecc--CccCCcccceEECCCCC-EEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence            321  11234689999999999 999985310           0112568999999877776665555678999999999


Q ss_pred             CeEEEEecCCceEEEEEccC--CCCCcc--eeeeeCC--CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEee
Q 046018          164 TFILIAETSNCRILRFWLHG--PNSGKQ--DVFAELP--GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       164 ~~lyv~~~~~~~i~~~~~~~--~~~~~~--~~~~~~~--~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                      +.||+++...++|++|+.+.  ......  ..+...+  ..|+++++|++|+||+++...+.     +.++++.++.+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-----v~~~d~~g~~~~~  268 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-----VLVFNKRGYPIGQ  268 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-----EEEECTTSCEEEE
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCE-----EEEECCCCCEEEE
Confidence            98999988889999999853  211111  1122222  36899999999999999987554     5555556666655


Q ss_pred             ccch
Q 046018          238 LPLS  241 (310)
Q Consensus       238 ~~~~  241 (310)
                      +..+
T Consensus       269 ~~~~  272 (333)
T 2dg1_A          269 ILIP  272 (333)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            5443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=6.6e-18  Score=142.60  Aligned_cols=228  Identities=18%  Similarity=0.216  Sum_probs=149.7

Q ss_pred             EEEeCCCCCeE-E-EEEeccccccccCCCCCccc-cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecC
Q 046018           12 LKWQGDELGWT-E-FAVTTSQRKECVRPFAPDIE-HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAA   88 (310)
Q Consensus        12 ~~~~~~~~~W~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~   88 (310)
                      ..++++..-|+ . .....+.+++..+....... .....|.+|++++ +|+||+++..++|+++|+++.....+.    
T Consensus        29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~i~~~d~~~~~~~~~~----  103 (270)
T 1rwi_B           29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLP----  103 (270)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECC----
T ss_pred             eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcCCCEEEEEeCCCceEeeee----
Confidence            34444332377 4 34456777776553322211 1225789999999 889999998556999999877654331    


Q ss_pred             CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEE
Q 046018           89 GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFIL  167 (310)
Q Consensus        89 ~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~ly  167 (310)
                      ......|++|+++++|+ +|+++..                 .+.|++++..+....... .....|++|+++++++ +|
T Consensus       104 ~~~~~~p~~i~~~~~g~-l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~  164 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGA-VYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VY  164 (270)
T ss_dssp             CCSCSSEEEEEECTTCC-EEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred             cCCcCCCcceEECCCCC-EEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EE
Confidence            12234789999999999 9999843                 568999987654333222 3345799999999997 99


Q ss_pred             EEecCCceEEEEEccCCCCCcceeeeeC-CCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhc
Q 046018          168 IAETSNCRILRFWLHGPNSGKQDVFAEL-PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLH  246 (310)
Q Consensus       168 v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~  246 (310)
                      +++..+++|.+|+.++...   ...... ...|.++++|++|+||+++..++.     +                     
T Consensus       165 v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-----v---------------------  215 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-----V---------------------  215 (270)
T ss_dssp             EEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTCCEEEEETTTSC-----E---------------------
T ss_pred             EEECCCCEEEEEecCCCce---EeecccCCCCceEEEECCCCCEEEEECCCCc-----E---------------------
Confidence            9998889999999875321   111111 156899999999999999976654     2                     


Q ss_pred             ccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEEe-CCEEEEecCCCCeEEEecc
Q 046018          247 SLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK-DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       247 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~vgs~~~~~i~~~~~  307 (310)
                                  .++++++....... ..+  +..+..++.. +|+||+++..+++|.++++
T Consensus       216 ------------~~~~~~~~~~~~~~-~~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          216 ------------VKLLAGSTTSTVLP-FTG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             ------------EEECTTCSCCEECC-CCS--CSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ------------EEEcCCCCcceeec-cCC--CCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence                        34444443322211 111  2345666543 6789999988899998875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.80  E-value=6.2e-17  Score=138.29  Aligned_cols=257  Identities=15%  Similarity=0.150  Sum_probs=168.7

Q ss_pred             EEEEeCCCCC--eEEEE-EeccccccccCCCCCccc--cccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEE
Q 046018           11 ILKWQGDELG--WTEFA-VTTSQRKECVRPFAPDIE--HICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLV   84 (310)
Q Consensus        11 i~~~~~~~~~--W~~~~-~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~   84 (310)
                      ...+..++++  |+... ..++.+++..+ .+....  .....|.+|++++ +|+||+++.. .+|+++|++ ++.+.+.
T Consensus        22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~   98 (300)
T 2qc5_A           22 PYGITSSEDGKVWFTQHKANKISSLDQSG-RIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYP   98 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred             cceeeECCCCCEEEEcCCCCeEEEECCCC-ceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEec
Confidence            4444444444  88653 35677777663 222221  1236789999998 8999999986 459999998 5554442


Q ss_pred             eecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEEecC
Q 046018           85 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVALSRD  162 (310)
Q Consensus        85 ~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d  162 (310)
                      ..   .....|.+|+++++|+ +|+++..                 .+.|++++++ ++.....  .....|++++++++
T Consensus        99 ~~---~~~~~~~~i~~~~~g~-l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           99 LP---QPDSGPYGITEGLNGD-IWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             CS---STTCCEEEEEECSTTC-EEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             CC---CCCCCCccceECCCCC-EEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            21   1235789999999999 9999853                 5689999998 6665432  23567899999999


Q ss_pred             CCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEee-cc
Q 046018          163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK-LP  239 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~-~~  239 (310)
                      ++ ||+++..++.|+++++++.    ...+..  ....|.++++|++|+||+++...+.     +..+++.++.... .+
T Consensus       157 g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-----i~~~~~~g~~~~~~~~  226 (300)
T 2qc5_A          157 NA-LWFTENQNNSIGRITNTGK----LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-----IGRITTTGEISEYDIP  226 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-----EEEECTTCCEEEEECS
T ss_pred             CC-EEEEecCCCeEEEECCCCc----EEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-----EEEEcCCCcEEEEECC
Confidence            98 9999888899999987432    222211  1246889999999999999987655     5666656655432 22


Q ss_pred             chhhhhcccccCCC--------CceEEEEECCCCCEEEEEEcCCCCeecceeEEEE-eCCEEEEecCCCCeEEEecc
Q 046018          240 LSFRQLHSLLVGGK--------PHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEE-KDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       240 ~~~~~~~~~~~~~~--------~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~~~  307 (310)
                      .....+.++++...        ....+.++++++++. .+..+.+  ...+..++. .+|+||+++. + +|.+++.
T Consensus       227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          227 TPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQ-EYQLQTE--NAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE-EEECCST--TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEE-EEECCcc--CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            22233344443322        223556677766554 3333322  123555554 4789999998 6 9999875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.79  E-value=3.8e-18  Score=150.30  Aligned_cols=201  Identities=17%  Similarity=0.201  Sum_probs=145.7

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEe
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVT   85 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~   85 (310)
                      ....|+...+.  |++.....|.+++..+...+.+ ......|.||++|+.+++||+++... .|.++++++...+.+..
T Consensus        76 ~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~  155 (349)
T 3v64_C           76 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW  155 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             EEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe
Confidence            44567765555  8888778888888776432222 22346799999997688999999874 59999998765444432


Q ss_pred             ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCC
Q 046018           86 EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRT  164 (310)
Q Consensus        86 ~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~  164 (310)
                          .....|++|++||.+.+||+++..                ..++|+++++++...+.+. ..+..|+||+++++++
T Consensus       156 ----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~  215 (349)
T 3v64_C          156 ----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR  215 (349)
T ss_dssp             ----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTT
T ss_pred             ----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCC
Confidence                234579999999865569999954                1378999999865555443 4577899999999888


Q ss_pred             eEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018          165 FILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       165 ~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      +|||+++.+++|+++++++..   ...+.. ....|++|+++ +|+||++++..+.     |...+ .+|+....+.
T Consensus       216 ~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~~~~-----V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          216 RMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWHTKS-----INSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETTTTE-----EEEEETTTCCSCEEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CCEEEEecCCCCe-----EEEEEccCCCccEEec
Confidence            899999999999999998642   222322 23579999995 5789999998876     44443 5666544443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.79  E-value=5.9e-17  Score=137.10  Aligned_cols=196  Identities=17%  Similarity=0.205  Sum_probs=136.8

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ..+|+++++|+++++||+++... .|.+++++++..+.+..    .....|++|+++++++.||+++..           
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~~~~~p~~ia~d~~~~~lyv~d~~-----------   99 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----QDLGSPEGIALDHLGRTIFWTDSQ-----------   99 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----TTCCCEEEEEEETTTTEEEEEETT-----------
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----CCCCCccEEEEEecCCeEEEEECC-----------
Confidence            35789999998678999999875 59999998776544432    123579999999975559999954           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeee-CCCCCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAE-LPGFPD  200 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~p~  200 (310)
                            .++|.++++++...+.+. .....|++|+++|++++|||++..  +++|+++++++..   ...+.. ....|.
T Consensus       100 ------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~  170 (267)
T 1npe_A          100 ------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPN  170 (267)
T ss_dssp             ------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEE
T ss_pred             ------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECCCCCCc
Confidence                  678999998765444443 345789999999987889999976  6799999988642   222322 225799


Q ss_pred             eeEECCC-CCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCee
Q 046018          201 NVRSNSN-GEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTL  279 (310)
Q Consensus       201 ~i~~d~~-G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~  279 (310)
                      ++++|++ ++||+++...+.     |.                                 +++.++.....+..  +  .
T Consensus       171 gia~d~~~~~lyv~d~~~~~-----I~---------------------------------~~~~~g~~~~~~~~--~--~  208 (267)
T 1npe_A          171 GLTFDAFSSQLCWVDAGTHR-----AE---------------------------------CLNPAQPGRRKVLE--G--L  208 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTE-----EE---------------------------------EEETTEEEEEEEEE--C--C
T ss_pred             EEEEcCCCCEEEEEECCCCE-----EE---------------------------------EEecCCCceEEEec--C--C
Confidence            9999996 579999877664     22                                 23333322222211  1  1


Q ss_pred             cceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          280 SFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       280 ~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      ..+..++..++.||+++..+++|.+++.
T Consensus       209 ~~P~gi~~d~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          209 QYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             CSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEeCCEEEEEECCCCeEEEEeC
Confidence            2344555567788888887788888775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.79  E-value=1.3e-16  Score=136.13  Aligned_cols=260  Identities=11%  Similarity=0.118  Sum_probs=169.0

Q ss_pred             EEEEEeCCCCC--eEEEE-EeccccccccCCCCCccc--cccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEE
Q 046018           10 RILKWQGDELG--WTEFA-VTTSQRKECVRPFAPDIE--HICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQL   83 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~-~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~   83 (310)
                      .+..+..++++  |+... ..++.+++..+ .+....  .....|.+|++++ +|+||+++.. ++|++++++ ++++.+
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~   92 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLDG-KITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GIIKEY   92 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCCC-CeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence            45566555555  98665 35678887763 333222  1236789999999 8999999885 459999987 444444


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEEec
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVALSR  161 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~  161 (310)
                      . .+  .....|.+|+++++|+ +|+++..                 .+.|+++|+ +++.....  .....|+++++++
T Consensus        93 ~-~~--~~~~~~~~i~~~~~g~-l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~  150 (299)
T 2z2n_A           93 T-LP--NPDSAPYGITEGPNGD-IWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGS  150 (299)
T ss_dssp             E-CS--STTCCEEEEEECTTSC-EEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             e-CC--CcCCCceeeEECCCCC-EEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcC
Confidence            2 11  1234789999999999 9999843                 568999999 56665443  2345689999999


Q ss_pred             CCCeEEEEecCCceEEEEEccCCCCCcceeee--eCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEee-c
Q 046018          162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFA--ELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK-L  238 (310)
Q Consensus       162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~-~  238 (310)
                      +++ +|+++..++.|+++++++.    ...+.  .....|.++++|++|+||+++...+.     +..+++.++.... .
T Consensus       151 ~g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-----i~~~~~~g~~~~~~~  220 (299)
T 2z2n_A          151 DNA-LWFTENQNNAIGRITESGD----ITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-----IGRITTSGEITEFKI  220 (299)
T ss_dssp             TSC-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-----EEEECTTCCEEEEEC
T ss_pred             CCC-EEEEeCCCCEEEEEcCCCc----EEEeeCCCCCCcceeEEECCCCCEEEEccCCce-----EEEECCCCcEEEEEC
Confidence            986 9999888889999987321    22221  12245889999999999999976554     5555556654332 2


Q ss_pred             cchhhhhcccccCCC--------CceEEEEECCCCCEEEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEeccc
Q 046018          239 PLSFRQLHSLLVGGK--------PHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       239 ~~~~~~~~~~~~~~~--------~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~~  308 (310)
                      +.+...+.++.+...        ....+.+++++++ +..+..+.+  ...+..++..+|+||+++. .++|.+++.-
T Consensus       221 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~--~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNI-IEEYPIQIK--SAEPHGICFDGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTE-EEEEECSSS--SCCEEEEEECSSCEEEEET-TTEEEEEEEC
T ss_pred             CCCCCCceeEEECCCCCEEEeccCCceEEEECCCCc-eEEEeCCCC--CCccceEEecCCCEEEEec-CCcEEEEEcC
Confidence            222233334433322        2234556666554 334433222  1335555447889999986 7899998753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=4.3e-17  Score=147.42  Aligned_cols=234  Identities=14%  Similarity=0.157  Sum_probs=156.9

Q ss_pred             EEEEeCC-CCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCC-----ceEEEeCCCCeE--
Q 046018           11 ILKWQGD-ELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYL-----GFQVVGPEGGLA--   80 (310)
Q Consensus        11 i~~~~~~-~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~-----gi~~~d~~~~~~--   80 (310)
                      -..++++ .+. |+......+.+++..+.....+......|.+|++++ +|+ ||+++...     .++.++.++...  
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~  219 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRESGFKVI  219 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGGGTSCSE
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCCCceeee
Confidence            3456652 333 553333567777776633333344557899999999 666 99999742     366677765432  


Q ss_pred             EEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcccceE
Q 046018           81 TQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGV  157 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi  157 (310)
                      ..+.      ....|++++++| +|+ ||+++..                 .++|++++++++....+.  .....|++|
T Consensus       220 ~~l~------~~~~p~giavdp~~g~-lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~~P~gi  275 (430)
T 3tc9_A          220 TELT------KGQNCNGAETHPINGE-LYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHI  275 (430)
T ss_dssp             EEEE------ECSSCCCEEECTTTCC-EEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSSCCEEE
T ss_pred             eeec------cCCCceEEEEeCCCCE-EEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCCcceeE
Confidence            1221      245799999999 788 9999954                 678999999877663332  233569999


Q ss_pred             EEecCCCeEEEEecCCceEEEEEccCC--CCCcceeeeeC---------------CCCCC-eeEE--------CCCCCEE
Q 046018          158 ALSRDRTFILIAETSNCRILRFWLHGP--NSGKQDVFAEL---------------PGFPD-NVRS--------NSNGEFW  211 (310)
Q Consensus       158 ~~~~d~~~lyv~~~~~~~i~~~~~~~~--~~~~~~~~~~~---------------~~~p~-~i~~--------d~~G~l~  211 (310)
                      +++|++++||+++..+++|++++.++.  .......+...               -..|. ++++        |++|+||
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~ly  355 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFY  355 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEE
Confidence            999999999999999999999998752  11111222211               12477 7887        5679999


Q ss_pred             EEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcC--------CC-----Ce
Q 046018          212 VALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDC--------EG-----KT  278 (310)
Q Consensus       212 va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~--------~g-----~~  278 (310)
                      |++..++.     |                                 .+++++|++.......        +|     ..
T Consensus       356 vaD~~n~~-----I---------------------------------~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~  397 (430)
T 3tc9_A          356 FCDRENHC-----I---------------------------------RILTPQGRVTTFAGRGSNGTSGYNDGDLRQEAR  397 (430)
T ss_dssp             EEEGGGTE-----E---------------------------------EEECTTSEEEEEEECCTTSSSSCBCEETTTTCB
T ss_pred             EEECCCcE-----E---------------------------------EEECCCCcEEEEEeCCCCCCCcccCCCchhhcE
Confidence            99988764     2                                 3344444333332210        11     23


Q ss_pred             ecceeEEEEe--CCEEEEecCCCCeEEEecc
Q 046018          279 LSFISEVEEK--DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       279 ~~~~~~~~~~--~g~l~vgs~~~~~i~~~~~  307 (310)
                      +..+..++..  ++.|||+...+++|.++++
T Consensus       398 ~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          398 FNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             CSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             eCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            5678888765  5899999999999999875

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.79  E-value=3.9e-18  Score=148.12  Aligned_cols=202  Identities=17%  Similarity=0.188  Sum_probs=145.4

Q ss_pred             cEEEEEeCCCCC--eEEEEEeccccccccCCCCC--ccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEE
Q 046018            9 GRILKWQGDELG--WTEFAVTTSQRKECVRPFAP--DIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQL   83 (310)
Q Consensus         9 ~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~   83 (310)
                      .....|+...+.  |++.....|.+++..+....  ........|.||++|+.+++||+++... .|.++++++...+.+
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  116 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL  116 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE
Confidence            345567765555  89888888888877664211  1222346899999997688999999874 599999987655444


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE-ecCCcccceEEEecC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL-LQGLAFANGVALSRD  162 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~~~gi~~~~d  162 (310)
                      ..    .....|++|++||.+.+||+++..                ..+.|+++++++...+.+ ...+..|+||+++++
T Consensus       117 ~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~  176 (318)
T 3sov_A          117 FW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE  176 (318)
T ss_dssp             EC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred             Ee----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEEEecc
Confidence            32    234579999999865559999853                257899999985544444 356778999999998


Q ss_pred             CCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccc-cccEEeecc
Q 046018          163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSW-LGKTLLKLP  239 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~-~g~~~~~~~  239 (310)
                      ++.|||+++.+++|+++++++..   .+.+.. ....|++++++. +.+|++++..+.     |..+++ +|+....+.
T Consensus       177 ~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-----V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          177 EQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-----ILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCS---CEEEECSCCSCEEEEEEET-TEEEEEETTTTE-----EEEEETTTCCSCEEEE
T ss_pred             CCEEEEEECCCCEEEEEcCCCCc---eEEEecCCCCCceEEEEeC-CEEEEEecCCCe-----EEEEECCCCCceEEEe
Confidence            88899999999999999998642   233333 336799999985 568888887775     455544 566544443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.78  E-value=5.3e-18  Score=151.37  Aligned_cols=202  Identities=17%  Similarity=0.195  Sum_probs=145.7

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEe
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVT   85 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~   85 (310)
                      ....|+...+.  |++.....|.+++..+...+.+ ......|.||++|+..++||+++... .|.++++++...+.+..
T Consensus       119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~  198 (386)
T 3v65_B          119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW  198 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC
T ss_pred             EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec
Confidence            44567765555  8887777888888766332222 22346899999997688999999874 59999998765444432


Q ss_pred             ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCC
Q 046018           86 EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRT  164 (310)
Q Consensus        86 ~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~  164 (310)
                          ..+..|++|++||++.+||+++..                ..++|+++++++...+.+. ..+..|+||+++++++
T Consensus       199 ----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~  258 (386)
T 3v65_B          199 ----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR  258 (386)
T ss_dssp             ----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGT
T ss_pred             ----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCC
Confidence                234579999999876669999854                1378999999865544443 5577799999999888


Q ss_pred             eEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccc
Q 046018          165 FILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPL  240 (310)
Q Consensus       165 ~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~  240 (310)
                      +|||+++.+++|+++++++..   ...+.. ....|++|+++ ++.||++++..+.     |.+++ .+|+....+..
T Consensus       259 ~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~~~~-----V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          259 RMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWHTKS-----INSANKFTGKNQEIIRN  327 (386)
T ss_dssp             EEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETTTTE-----EEEEETTTCCSCEEEEC
T ss_pred             EEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CCEEEEeeCCCCe-----EEEEECCCCcceEEEcc
Confidence            899999999999999988632   222322 23579999995 5789999988776     45544 56665555443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=1.2e-16  Score=136.14  Aligned_cols=221  Identities=17%  Similarity=0.212  Sum_probs=146.6

Q ss_pred             eEEE-EEeccccccccCCCCCccc------cccceeceEEEeCCCCcEEEEEC--CCceEEEeCCCCeEEEEEeecCCcc
Q 046018           21 WTEF-AVTTSQRKECVRPFAPDIE------HICGRPLGIRFDKKTGDLYIADA--YLGFQVVGPEGGLATQLVTEAAGQP   91 (310)
Q Consensus        21 W~~~-~~~~~~~~~~~~~~~~~~~------~~~~~p~gl~~d~~~g~l~v~~~--~~gi~~~d~~~~~~~~~~~~~~~~~   91 (310)
                      |+.. ....+.+++..+.....+.      .....|.+++++..+|+||+++.  ...|.++|+++..+..+ .   ...
T Consensus        44 ~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~-~---~~~  119 (286)
T 1q7f_A           44 IVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF-G---ATI  119 (286)
T ss_dssp             EEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE-C---TTT
T ss_pred             EEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEe-c---Ccc
Confidence            6643 2345666776552211111      11247889999533899999996  35699999775544333 1   123


Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEEecCCCeEEEE
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVALSRDRTFILIA  169 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~  169 (310)
                      ...|++|+++++|+ +|+++..                 .+.|++|++++.....+.  .....|++|+++++++ +|++
T Consensus       120 ~~~~~~i~~~~~g~-l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~  180 (286)
T 1q7f_A          120 LQHPRGVTVDNKGR-IIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFIS  180 (286)
T ss_dssp             CSCEEEEEECTTSC-EEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEE
T ss_pred             CCCceEEEEeCCCC-EEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEE
Confidence            35789999999999 9999854                 678999998755444443  2345699999999987 9999


Q ss_pred             ecCCceEEEEEccCCCCCcceeeeeC--CCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcc
Q 046018          170 ETSNCRILRFWLHGPNSGKQDVFAEL--PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHS  247 (310)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~  247 (310)
                      +..+++|.+|++++..   ...+...  ...|.++++|++|+||+++..++.                            
T Consensus       181 ~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~----------------------------  229 (286)
T 1q7f_A          181 DNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHNNF----------------------------  229 (286)
T ss_dssp             EGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSSSC----------------------------
T ss_pred             ECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCCCCE----------------------------
Confidence            9889999999986531   1222211  146899999999999999876541                            


Q ss_pred             cccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEE-eCCEEEEecCCCCeEEEecc
Q 046018          248 LLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEE-KDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       248 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~~~  307 (310)
                               .+..++++|+.+..+.....  ...+..++. .+|+||+++. +++|.+++.
T Consensus       230 ---------~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~  278 (286)
T 1q7f_A          230 ---------NLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRY  278 (286)
T ss_dssp             ---------EEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred             ---------EEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence                     12345566666555543221  123444443 4678999875 678888764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.78  E-value=8.5e-17  Score=144.67  Aligned_cols=235  Identities=12%  Similarity=0.077  Sum_probs=148.4

Q ss_pred             eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcce
Q 046018           21 WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDL   98 (310)
Q Consensus        21 W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i   98 (310)
                      |.+.....+.+++..+.+...+......|. ++++++.+.||+++...  .|+++++.++................|+++
T Consensus       146 v~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~i  224 (409)
T 3hrp_A          146 AYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAV  224 (409)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBC
T ss_pred             EEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEE
Confidence            444333556677776533233333345677 99999555688888754  699999886653222211111134679999


Q ss_pred             EEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE----ecCCc--ccc-eEEEecCCCeEEEEe
Q 046018           99 DIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL----LQGLA--FAN-GVALSRDRTFILIAE  170 (310)
Q Consensus        99 ~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~----~~~~~--~~~-gi~~~~d~~~lyv~~  170 (310)
                      +++| +|+ ||+++                  ..+.|++||++++....+    .....  .|. +|+++|+++.||+++
T Consensus       225 av~p~~g~-lyv~d------------------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          225 ALDETEEW-LYFVD------------------SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             EECTTSSE-EEEEC------------------TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             EEeCCCCe-EEEEE------------------CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            9999 566 99975                  267899999988776654    22222  244 999999767799999


Q ss_pred             cCCceEEEEEccCCCCCcceeeeeC---------------CCCCCeeEECCCCCEEEEEe-cCCccceeeeeecc-cccc
Q 046018          171 TSNCRILRFWLHGPNSGKQDVFAEL---------------PGFPDNVRSNSNGEFWVALH-AKKGLFGKLILLNS-WLGK  233 (310)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~~~~~---------------~~~p~~i~~d~~G~l~va~~-~~~~~~~~~i~~~~-~~g~  233 (310)
                      ..+++|++|+.++.    ...+...               -..|.+|++|++|+||+++. .++.     |.+++ +.|+
T Consensus       286 ~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-----I~~~~~~~G~  356 (409)
T 3hrp_A          286 QNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-----LRKLDILDGY  356 (409)
T ss_dssp             TTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-----EEEEETTTTE
T ss_pred             CCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-----EEEEECCCCE
Confidence            99999999998753    1111111               13589999999999999998 6664     33333 3333


Q ss_pred             EEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEEe-CCEEEEecCCCCeEEEecc
Q 046018          234 TLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK-DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~vgs~~~~~i~~~~~  307 (310)
                      .......+..           ..     ..+|       .+....+..+..++.. +|.||++...+.+|.++.+
T Consensus       357 v~~~~g~~~~-----------~g-----~~~g-------~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 VSTVAGQVDV-----------AS-----QIDG-------TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEECTTC-----------BS-----CCCB-------STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCC-----------CC-----cCCC-------ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            2211100000           00     0000       0011235667777765 5999999999999999864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.77  E-value=2.2e-17  Score=143.49  Aligned_cols=199  Identities=15%  Similarity=0.163  Sum_probs=140.6

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccC----CCCCccc-cccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEE
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVR----PFAPDIE-HICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLAT   81 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~----~~~~~~~-~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~   81 (310)
                      .-..|+.+.+.  |++.....|.+++..+    .....+. .....|.||++|+.+++||+++.. +.|.++++++...+
T Consensus        33 ~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~  112 (316)
T 1ijq_A           33 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK  112 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEE
T ss_pred             EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceE
Confidence            34566765555  8887777788877654    2212222 233689999999657899999987 45999999877655


Q ss_pred             EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEe
Q 046018           82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALS  160 (310)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~  160 (310)
                      .+...    ....|++|++||++.+||+++..                ..+.|+++++++...+.+. ..+..|+||+++
T Consensus       113 ~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d  172 (316)
T 1ijq_A          113 TLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLD  172 (316)
T ss_dssp             EEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEEEEEEE
T ss_pred             EEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECCCCCceEEEEe
Confidence            45432    34579999999865569999853                1378999999865555443 457789999999


Q ss_pred             cCCCeEEEEecCCceEEEEEccCCCCCcceeeee---CCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEe
Q 046018          161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLL  236 (310)
Q Consensus       161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~  236 (310)
                      +++++|||+++.+++|++++.++..   .+.+..   ....|.+|+++. |+||++++..+.     |.+++ .+|+...
T Consensus       173 ~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~-----V~~~~~~~g~~~~  243 (316)
T 1ijq_A          173 LLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA-----IFSANRLTGSDVN  243 (316)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTE-----EEEEETTTCCCCE
T ss_pred             ccCCEEEEEECCCCeEEEEecCCCc---eEEEeecCCccCCcEEEEEEC-CEEEEEECCCCe-----EEEEeCCCCcceE
Confidence            9988899999999999999998642   233333   235799999984 889999987776     45554 3555443


Q ss_pred             e
Q 046018          237 K  237 (310)
Q Consensus       237 ~  237 (310)
                      .
T Consensus       244 ~  244 (316)
T 1ijq_A          244 L  244 (316)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.77  E-value=3e-17  Score=138.90  Aligned_cols=202  Identities=16%  Similarity=0.197  Sum_probs=141.0

Q ss_pred             EEEEeCCCCC--eEEEEEeccccccccCCCCCccc-cccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEee
Q 046018           11 ILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIE-HICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTE   86 (310)
Q Consensus        11 i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~   86 (310)
                      -..|+++.+.  |.+.....+.+++..+.....+. .....|++|++++++++||+++... .|.++++++...+.+...
T Consensus        40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~  119 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT  119 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC
Confidence            3445654444  66665566777777663322222 2236899999998568999999874 599999987654434321


Q ss_pred             cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCe
Q 046018           87 AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTF  165 (310)
Q Consensus        87 ~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~  165 (310)
                          ....|++|++++++.+||+++...               ..+.|+++++++...+.+. .....|++|++++++++
T Consensus       120 ----~~~~P~~i~vd~~~g~lyv~~~~~---------------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~  180 (267)
T 1npe_A          120 ----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQ  180 (267)
T ss_dssp             ----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred             ----CCCCccEEEEeeCCCEEEEEECCC---------------CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCE
Confidence                235799999999655599998431               1468999998755444443 45667999999999888


Q ss_pred             EEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccc-cccEEeeccc
Q 046018          166 ILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSW-LGKTLLKLPL  240 (310)
Q Consensus       166 lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~-~g~~~~~~~~  240 (310)
                      |||++..+++|+++++++.   ....+......|.++++| +++||++++.++.     +..+++ .++.+..++.
T Consensus       181 lyv~d~~~~~I~~~~~~g~---~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~-----v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          181 LCWVDAGTHRAECLNPAQP---GRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS-----VIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             EEEEETTTTEEEEEETTEE---EEEEEEECCCSEEEEEEE-TTEEEEEETTTTE-----EEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCEEEEEecCCC---ceEEEecCCCCceEEEEe-CCEEEEEECCCCe-----EEEEeCCCCCceEEEcc
Confidence            9999999999999998753   122233333579999998 6899999988776     455544 5676666653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.76  E-value=2.7e-16  Score=140.96  Aligned_cols=219  Identities=12%  Similarity=0.141  Sum_probs=144.0

Q ss_pred             eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCC----eEEEEEeecCCccccCCcceEEe
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGG----LATQLVTEAAGQPLRFTNDLDID  101 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~----~~~~~~~~~~~~~~~~~~~i~~d  101 (310)
                      ..+.+++..+.....+......|.+|++++.++.||+++... .|+++++++.    ..+.+..    .....|.+|++|
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~~p~glavD  167 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVD  167 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC----SSCSCEEEEEEE
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe----CCCCCcccEEEE
Confidence            345555555543344444557899999998788999999874 5999998763    2222322    234579999999


Q ss_pred             CCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecC-CceEEEE
Q 046018          102 EHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETS-NCRILRF  179 (310)
Q Consensus       102 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~-~~~i~~~  179 (310)
                      +.++.||+++..                 .++|.++++++...+.+. ..+..|++|+++|.++.|||++.. +++|+++
T Consensus       168 ~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~  230 (400)
T 3p5b_L          168 WIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  230 (400)
T ss_dssp             TTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred             ecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence            854449999964                 678999999876555544 467789999999988889999976 4899999


Q ss_pred             EccCCCCCcceeeeeCCCCCCeeEECC-CCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEE
Q 046018          180 WLHGPNSGKQDVFAELPGFPDNVRSNS-NGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATA  258 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      +++|...  ...+...-..|.+|++|+ +++||+++...+.     |.                                
T Consensus       231 ~~dG~~~--~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-----I~--------------------------------  271 (400)
T 3p5b_L          231 GLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-----IS--------------------------------  271 (400)
T ss_dssp             ETTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-----EE--------------------------------
T ss_pred             eCCCCcc--EEEEECCCCceEEEEEEeCCCEEEEEECCCCE-----EE--------------------------------
Confidence            9987422  122222225799999995 5689999876553     22                                


Q ss_pred             EEECCCCCEEEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          259 IKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       259 ~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                       +++.+|...+.+.... ..+..+.++...++.||+..+.+.+|.++++
T Consensus       272 -~~d~dG~~~~~~~~~~-~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          272 -SIDVNGGNRKTILEDE-KRLAHPFSLAVFEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             -EEETTSCCCEEEEECS-STTSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred             -EEeCCCCccEEEEeCC-CCCCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence             3333333222221111 1123455555567777777777777777764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.76  E-value=2.2e-16  Score=153.61  Aligned_cols=266  Identities=11%  Similarity=0.127  Sum_probs=178.2

Q ss_pred             ccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccc---------cceeceEEEeCCCCc-EEEEECCCceEEE
Q 046018            6 VADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHI---------CGRPLGIRFDKKTGD-LYIADAYLGFQVV   73 (310)
Q Consensus         6 ~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~gl~~d~~~g~-l~v~~~~~gi~~~   73 (310)
                      +.+..|..+..+.++  |+++...||.+++..+..|......         ...+..|+.|+ +|+ ||+++...||+++
T Consensus       354 l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          354 LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             CSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEE
Confidence            345678889888777  9988888999999877555443211         23456888888 899 9999988899999


Q ss_pred             eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC---
Q 046018           74 GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG---  150 (310)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---  150 (310)
                      |+++++++.+.......+...+.+|+.|++|+ ||+++                   .+.|++|++++++++.+...   
T Consensus       433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt-------------------~~Gl~~~~~~~~~~~~~~~~~~~  492 (795)
T 4a2l_A          433 HRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGT-------------------LSALVRFNPEQRSFTTIEKEKDG  492 (795)
T ss_dssp             ETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEE-------------------SSCEEEEETTTTEEEECCBCTTC
T ss_pred             eCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEe-------------------cCceeEEeCCCCeEEEccccccc
Confidence            99988877664321122334678899999999 99998                   34699999998888765322   


Q ss_pred             --C--cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---CC-CCCCeeEECCCCCEEEEEecCCccce
Q 046018          151 --L--AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LP-GFPDNVRSNSNGEFWVALHAKKGLFG  222 (310)
Q Consensus       151 --~--~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~-~~p~~i~~d~~G~l~va~~~~~~~~~  222 (310)
                        .  .....|+.+++++ ||++..  ++|+++++++... .......   ++ .....++.|++|+||+++.. +    
T Consensus       493 ~~~~~~~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-G----  563 (795)
T 4a2l_A          493 TPVVSKQITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-G----  563 (795)
T ss_dssp             CBCCCCCEEEEEECTTCC-EEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-C----
T ss_pred             cccCCceEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-C----
Confidence              1  2245677888887 888754  7899999875422 1100001   11 22356889999999999976 4    


Q ss_pred             eeeeeccccccEEeeccchhhh----hcc--------cccCCCCceEEEEECCCCCEEEEEEcCCCCeecce--eEEE-E
Q 046018          223 KLILLNSWLGKTLLKLPLSFRQ----LHS--------LLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFI--SEVE-E  287 (310)
Q Consensus       223 ~~i~~~~~~g~~~~~~~~~~~~----~~~--------~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~--~~~~-~  287 (310)
                        +.++++....+..+......    ..+        +|++..  ..+.+++++...+..+...+|.+...+  .+++ .
T Consensus       564 --l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~  639 (795)
T 4a2l_A          564 --FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRT  639 (795)
T ss_dssp             --EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEEC
T ss_pred             --ceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceEEEcCCCCcEEEcCCcCCCccccCccCceeEC
Confidence              56665544444333221111    112        222221  256788988888888877777655554  2333 4


Q ss_pred             eCCEEEEecCCCCeEEEecc
Q 046018          288 KDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       288 ~~g~l~vgs~~~~~i~~~~~  307 (310)
                      .+|+||+|+  .++|.+|+.
T Consensus       640 ~~G~l~~g~--~~Gl~~~~p  657 (795)
T 4a2l_A          640 SVGQMYFGG--INGITTFRP  657 (795)
T ss_dssp             TTSCEEEEE--TTEEEEECG
T ss_pred             CCCeEEEec--CCceEEEcH
Confidence            579999999  568888875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.75  E-value=2.6e-16  Score=151.46  Aligned_cols=218  Identities=11%  Similarity=0.131  Sum_probs=145.5

Q ss_pred             ccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCe----EEEEEeecCCccccCCcceEEeC
Q 046018           28 TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGL----ATQLVTEAAGQPLRFTNDLDIDE  102 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~----~~~~~~~~~~~~~~~~~~i~~d~  102 (310)
                      .+.+++........+......|.+|+++..+++||+++... .|+++++++..    .+.++.    ..+..|.+||+|+
T Consensus       405 ~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~----~~l~~P~GLAvD~  480 (791)
T 3m0c_C          405 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVDW  480 (791)
T ss_dssp             SEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCEEEEET
T ss_pred             ceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe----cCCCCcceeeeee
Confidence            34444444433334444557889999998788999999985 49999887632    222222    2355799999998


Q ss_pred             CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCC-ceEEEEE
Q 046018          103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSN-CRILRFW  180 (310)
Q Consensus       103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~~~  180 (310)
                      .++.||+++..                 .++|.++++++...+++. ..+..|++|+++|.++.|||++.+. .+|++++
T Consensus       481 ~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~  543 (791)
T 3m0c_C          481 IHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  543 (791)
T ss_dssp             TTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             cCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence            87669999965                 678999999876655554 4677899999999888899999876 8999999


Q ss_pred             ccCCCCCcceeeee-CCCCCCeeEEC-CCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEE
Q 046018          181 LHGPNSGKQDVFAE-LPGFPDNVRSN-SNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATA  258 (310)
Q Consensus       181 ~~~~~~~~~~~~~~-~~~~p~~i~~d-~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      ++|..   ...+.. ....|.+|++| .+|+||+++...+.     |                                 
T Consensus       544 ~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-----I---------------------------------  582 (791)
T 3m0c_C          544 LNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-----I---------------------------------  582 (791)
T ss_dssp             TTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-----E---------------------------------
T ss_pred             cCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-----E---------------------------------
Confidence            98642   222322 23579999999 56789999876553     2                                 


Q ss_pred             EEECCCCCEEEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEeccc
Q 046018          259 IKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       259 ~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~~  308 (310)
                      .+++.+|.....+... +..+..+.++...+++||+....+.+|.+++++
T Consensus       583 ~~~d~dG~~~~~v~~~-~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          583 SSIDVNGGNRKTILED-EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             EEEETTSCSCEEEEEC-TTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEEecCCCceEEEecC-CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCC
Confidence            2333333322222211 112334555556677777777777777777653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.75  E-value=4.5e-16  Score=135.12  Aligned_cols=150  Identities=17%  Similarity=0.154  Sum_probs=112.0

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ...+.+|++++.+++||+++... .|.+++++++.. +.+...    ....|.+|++|+.++.||+++..          
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----~l~~p~glavd~~~g~ly~~d~~----------   99 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----GLLSPDGLACDWLGEKLYWTDSE----------   99 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----CCSCCCEEEEETTTTEEEEEETT----------
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----CCCCccEEEEEcCCCeEEEEECC----------
Confidence            35788999998778999999875 499999987642 122221    23479999999754449999954          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecC-CceEEEEEccCCCCCcceeee-eCCCCCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETS-NCRILRFWLHGPNSGKQDVFA-ELPGFPD  200 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~-~~~i~~~~~~~~~~~~~~~~~-~~~~~p~  200 (310)
                             .++|.++++++...+.+. ..+..|++|+++|.++.|||++.. .++|++++++|..   ...+. ..-..|+
T Consensus       100 -------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~Pn  169 (318)
T 3sov_A          100 -------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYWPN  169 (318)
T ss_dssp             -------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEE
T ss_pred             -------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCCcc
Confidence                   678999999865545444 567789999999987889999965 6899999998642   22222 2225799


Q ss_pred             eeEECC-CCCEEEEEecCCc
Q 046018          201 NVRSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       201 ~i~~d~-~G~l~va~~~~~~  219 (310)
                      +|++|+ +++||+++...+.
T Consensus       170 glavd~~~~~lY~aD~~~~~  189 (318)
T 3sov_A          170 GLTLDYEEQKLYWADAKLNF  189 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTE
T ss_pred             EEEEeccCCEEEEEECCCCE
Confidence            999997 5789999877654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.75  E-value=1e-16  Score=143.73  Aligned_cols=200  Identities=16%  Similarity=0.182  Sum_probs=141.6

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccCC----CCCcc-ccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEE
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVRP----FAPDI-EHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLAT   81 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~----~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~   81 (310)
                      ....|+...+.  |++.....|.+++..+.    ....+ ......|.||++|+..++||+++... .|.++++++...+
T Consensus       115 ~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~  194 (400)
T 3p5b_L          115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK  194 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE
T ss_pred             eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE
Confidence            44556665554  88877777777766541    11222 22446899999997688999999874 5999999987665


Q ss_pred             EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE-ecCCcccceEEEe
Q 046018           82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL-LQGLAFANGVALS  160 (310)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~~~gi~~~  160 (310)
                      .+...    .+..|++|++||.+.+||+++..                ..+.|+++++++...+.+ ...+..|+||+++
T Consensus       195 ~l~~~----~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd  254 (400)
T 3p5b_L          195 TLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLD  254 (400)
T ss_dssp             EEEEC----SSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEECSSCSCEEEEEEE
T ss_pred             EEEeC----CCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEECCCCceEEEEEE
Confidence            55432    34579999999965569999854                246799999986554444 3556889999999


Q ss_pred             cCCCeEEEEecCCceEEEEEccCCCCCcceeeee---CCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEe
Q 046018          161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLL  236 (310)
Q Consensus       161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~  236 (310)
                      +++++|||+++..++|+++++++..   ...+..   ....|.+++++. +.||++++.++.     |.+.+ .+|+.+.
T Consensus       255 ~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~-----V~~~~~~~G~~~~  325 (400)
T 3p5b_L          255 LLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA-----IFSANRLTGSDVN  325 (400)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEET-TEEEEEESSSCS-----EEEEESSSCCCCE
T ss_pred             eCCCEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCe-----EEEEEcCCCCceE
Confidence            9988999999999999999998642   233322   125789999964 679999987776     44443 5665544


Q ss_pred             ec
Q 046018          237 KL  238 (310)
Q Consensus       237 ~~  238 (310)
                      .+
T Consensus       326 ~i  327 (400)
T 3p5b_L          326 LL  327 (400)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=2.2e-16  Score=153.33  Aligned_cols=266  Identities=14%  Similarity=0.111  Sum_probs=177.5

Q ss_pred             ccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCcccc----------ccceeceEEEeCCCCcEEEEECCCceEEE
Q 046018            6 VADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEH----------ICGRPLGIRFDKKTGDLYIADAYLGFQVV   73 (310)
Q Consensus         6 ~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~----------~~~~p~gl~~d~~~g~l~v~~~~~gi~~~   73 (310)
                      +.+..|..+..|.++  |+++...|+.+++.....|.....          ....+..|+.|+ +|+||+++...||+++
T Consensus       310 l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt~~~Gl~~~  388 (781)
T 3v9f_A          310 LSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLWIGTDGGGINVF  388 (781)
T ss_dssp             BSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSCEEEEEBSSCEEEE
T ss_pred             CCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCCEEEEeCCCcEEEE
Confidence            455678888888877  998889999999887755544421          123466888888 8999999988899999


Q ss_pred             eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC---
Q 046018           74 GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG---  150 (310)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---  150 (310)
                      ++.++.++.+.. ........+.+|+.|++|+ ||+++.                  .+.|+++++++++++.....   
T Consensus       389 ~~~~~~~~~~~~-~~~~~~~~v~~i~~d~~g~-lWigt~------------------~~Gl~~~~~~~~~~~~~~~~~~~  448 (781)
T 3v9f_A          389 ENGKRVAIYNKE-NRELLSNSVLCSLKDSEGN-LWFGTY------------------LGNISYYNTRLKKFQIIELEKNE  448 (781)
T ss_dssp             ETTEEEEECC------CCCSBEEEEEECTTSC-EEEEET------------------TEEEEEECSSSCEEEECCSTTTC
T ss_pred             ECCCCeEEEccC-CCCCCCcceEEEEECCCCC-EEEEec------------------cCCEEEEcCCCCcEEEeccCCCC
Confidence            998766554421 1122334577899999999 999972                  46799999988888765431   


Q ss_pred             CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC------CCCCCeeEECCCCCEEEEEecCCccceee
Q 046018          151 LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL------PGFPDNVRSNSNGEFWVALHAKKGLFGKL  224 (310)
Q Consensus       151 ~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~p~~i~~d~~G~l~va~~~~~~~~~~~  224 (310)
                      ......|+.+++++ ||++..  +.|++|++.++..   ..+...      ......++.|++|+||+++...+      
T Consensus       449 ~~~v~~i~~d~~g~-lwigt~--~Gl~~~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G------  516 (781)
T 3v9f_A          449 LLDVRVFYEDKNKK-IWIGTH--AGVFVIDLASKKV---IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG------  516 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEET--TEEEEEESSSSSC---CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC------
T ss_pred             CCeEEEEEECCCCC-EEEEEC--CceEEEeCCCCeE---EecccCcccccccceeEEEEEcCCCCEEEEEcCCC------
Confidence            12345677777775 888743  7899999875432   222211      13346789999999999998655      


Q ss_pred             eeeccccccEEeeccchhh----hhcc--------cccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEE-eCCE
Q 046018          225 ILLNSWLGKTLLKLPLSFR----QLHS--------LLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEE-KDGQ  291 (310)
Q Consensus       225 i~~~~~~g~~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~  291 (310)
                      +.++++....+..+..+..    .+.+        +|++.. .+++.+++++...+..+...+|.+...+.+++. .+|+
T Consensus       517 l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~  595 (781)
T 3v9f_A          517 VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGN  595 (781)
T ss_dssp             EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSC
T ss_pred             EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCC
Confidence            6666655444433322111    1112        233322 334377888766667776666766556666665 4789


Q ss_pred             EEEecCCCCeEEEecc
Q 046018          292 LWMGSVLMPFIGIYNR  307 (310)
Q Consensus       292 l~vgs~~~~~i~~~~~  307 (310)
                      ||+++  ..+|.+++.
T Consensus       596 lW~~t--~~Gl~~~~~  609 (781)
T 3v9f_A          596 IWAST--NTGISCYIT  609 (781)
T ss_dssp             EEEEC--SSCEEEEET
T ss_pred             EEEEc--CCceEEEEC
Confidence            99998  567888875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=2.9e-15  Score=127.76  Aligned_cols=224  Identities=15%  Similarity=0.178  Sum_probs=151.6

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..|.+|++++ +|+||+++.. ++|.++|++ +++..+...   .....|.+|+++++|+ +|+++..            
T Consensus        15 ~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~---~~~~~~~~i~~~~~g~-l~v~~~~------------   76 (299)
T 2z2n_A           15 TGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLP---TPDAKVMCLTISSDGE-VWFTENA------------   76 (299)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECS---STTCCEEEEEECTTSC-EEEEETT------------
T ss_pred             CCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCC---cccCceeeEEECCCCC-EEEeCCC------------
Confidence            5789999999 8999999985 569999998 666544321   1234789999999999 9999843            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCe
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDN  201 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~  201 (310)
                           .+.|++++++ ++.+.+.  .....|.+|+++++++ ||+++...+.|+++++++.    ...+..  ....|.+
T Consensus        77 -----~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g~----~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           77 -----ANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITDDGK----IREYELPNKGSYPSF  145 (299)
T ss_dssp             -----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEE
T ss_pred             -----CCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECCCCC----EEEecCCCCCCCCce
Confidence                 5679999987 5555443  2345689999999887 9999888889999987432    222211  2246889


Q ss_pred             eEECCCCCEEEEEecCCccceeeeeeccccccEEee-ccchhhhhcccccCCC--------CceEEEEECCCCCEEEEEE
Q 046018          202 VRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK-LPLSFRQLHSLLVGGK--------PHATAIKLSEKGEVLEVLE  272 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~d~~g~~~~~~~  272 (310)
                      +++|++|++|+++...+.     +..++++++.... .+.....+..+++...        ....+.++++++++.. +.
T Consensus       146 i~~~~~g~l~v~~~~~~~-----i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~  219 (299)
T 2z2n_A          146 ITLGSDNALWFTENQNNA-----IGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITE-FK  219 (299)
T ss_dssp             EEECTTSCEEEEETTTTE-----EEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EE
T ss_pred             EEEcCCCCEEEEeCCCCE-----EEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEE-EE
Confidence            999999999999876554     5555556655432 2222222333333322        2234556677555433 32


Q ss_pred             cCCCCeecceeEEEEe-CCEEEEecCCCCeEEEecc
Q 046018          273 DCEGKTLSFISEVEEK-DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       273 ~~~g~~~~~~~~~~~~-~g~l~vgs~~~~~i~~~~~  307 (310)
                      .+..  ...+..++.. +|+||+++..+++|.+++.
T Consensus       220 ~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          220 IPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CSST--TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCCC--CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            2211  2345666554 6899999988899999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.73  E-value=4.3e-15  Score=126.74  Aligned_cols=225  Identities=15%  Similarity=0.164  Sum_probs=153.1

Q ss_pred             cceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ...|.+|++++ +|+||+++.. .+|.++|++ +++..+...   .....|.+|+++++|+ +|+++..           
T Consensus        19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~---~~~~~~~~i~~~~~g~-l~v~~~~-----------   81 (300)
T 2qc5_A           19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVP---TPDAKVMCLIVSSLGD-IWFTENG-----------   81 (300)
T ss_dssp             TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECS---STTCCEEEEEECTTSC-EEEEETT-----------
T ss_pred             CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECC---CCCCcceeEEECCCCC-EEEEecC-----------
Confidence            36899999999 8999999975 569999998 666543221   1235789999999999 9999843           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEec--CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-e-CCCCCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQ--GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-E-LPGFPD  200 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~p~  200 (310)
                            .+.|+++|++ ++.+.+..  ....|.+++++++++ +|+++..++.|+++++++.    ...+. . ....|.
T Consensus        82 ------~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~  149 (300)
T 2qc5_A           82 ------ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTADGT----IYEYDLPNKGSYPA  149 (300)
T ss_dssp             ------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTSC----EEEEECSSTTCCEE
T ss_pred             ------CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCCCC----EEEccCCCCCCCce
Confidence                  5789999998 66654432  345689999999887 9999887889999987632    22221 1 224688


Q ss_pred             eeEECCCCCEEEEEecCCccceeeeeeccccccEEee-ccchhhhhcccccCCC--------CceEEEEECCCCCEEEEE
Q 046018          201 NVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK-LPLSFRQLHSLLVGGK--------PHATAIKLSEKGEVLEVL  271 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~d~~g~~~~~~  271 (310)
                      ++++|++|+||+++...+.     +..++..++.... .+.....+..+.+...        ....+.+++++++.... 
T Consensus       150 ~i~~d~~g~l~v~~~~~~~-----i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~-  223 (300)
T 2qc5_A          150 FITLGSDNALWFTENQNNS-----IGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEY-  223 (300)
T ss_dssp             EEEECTTSSEEEEETTTTE-----EEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEE-
T ss_pred             eEEECCCCCEEEEecCCCe-----EEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEE-
Confidence            9999999999999976554     5566556655432 1222223333333322        22345566766655443 


Q ss_pred             EcCCCCeecceeEEEEe-CCEEEEecCCCCeEEEecc
Q 046018          272 EDCEGKTLSFISEVEEK-DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       272 ~~~~g~~~~~~~~~~~~-~g~l~vgs~~~~~i~~~~~  307 (310)
                      ..+.+  ...+..++.. +|+||+++..+++|.+++.
T Consensus       224 ~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          224 DIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             ECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             ECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            22221  2345666544 7899999988899999985

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.73  E-value=4.9e-16  Score=136.38  Aligned_cols=170  Identities=15%  Similarity=0.198  Sum_probs=119.3

Q ss_pred             cceeceEEEeCCCCcEEEEECC------CceEEEeCCCCeEEEEEeec--CCccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY------LGFQVVGPEGGLATQLVTEA--AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ  117 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~  117 (310)
                      ...|+++++|+ +|+||+++..      ..|.++|++++++.......  .......+++|++++++.++|+++....  
T Consensus        66 ~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--  142 (343)
T 2qe8_A           66 FDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--  142 (343)
T ss_dssp             CSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--
T ss_pred             eeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--
Confidence            46899999999 8999999975      46999999988754433321  1223357899999986545999986210  


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC------------------------------CcccceEEEecCCCeEE
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG------------------------------LAFANGVALSRDRTFIL  167 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~------------------------------~~~~~gi~~~~d~~~ly  167 (310)
                                  ..+.|++||+++++...+...                              ...++||+++||+++||
T Consensus       143 ------------~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly  210 (343)
T 2qe8_A          143 ------------DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY  210 (343)
T ss_dssp             ------------GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE
T ss_pred             ------------CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEE
Confidence                        156788888877665543311                              02479999999999999


Q ss_pred             EEecCCceEEEEEccC---CCCCccee---ee--eCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccc-cccEE
Q 046018          168 IAETSNCRILRFWLHG---PNSGKQDV---FA--ELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSW-LGKTL  235 (310)
Q Consensus       168 v~~~~~~~i~~~~~~~---~~~~~~~~---~~--~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~-~g~~~  235 (310)
                      ++++...+|++++.+.   ...+..+.   +.  ...+.|+++++|++|+||++....+.     |.++++ +|+..
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~-----V~~~d~~~G~~~  282 (343)
T 2qe8_A          211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSA-----IGVITSADRAYK  282 (343)
T ss_dssp             EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTE-----EEEEETTTTEEE
T ss_pred             EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCe-----EEEEECCCCCEE
Confidence            9998888999998641   11111111   11  12347999999999999999988776     566665 66543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=4.8e-16  Score=141.11  Aligned_cols=245  Identities=9%  Similarity=0.103  Sum_probs=161.4

Q ss_pred             cceeceEEEeC-CCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEE-------eCCCCEEEEEeCCCch
Q 046018           46 CGRPLGIRFDK-KTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI-------DEHKGVIYFTDSSTSF  116 (310)
Q Consensus        46 ~~~p~gl~~d~-~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~-------d~~g~~l~v~~~~~~~  116 (310)
                      ...|.+|++|| ++++||+++.. ++|.++|++++.++.+..... .....|++|++       +++|++||+++....-
T Consensus       138 ~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          138 FSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             CCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             cCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-cccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            36799999997 36899999986 569999999998887765422 24557999999       9999889999965200


Q ss_pred             hhhhhhhhhhcCCCCceEEEEeCCC-CeE------EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc-------
Q 046018          117 QRRQFMSSILSGDKTGRLLKYEKTT-KEV------TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH-------  182 (310)
Q Consensus       117 ~~~~~~~~~~~~~~~g~v~~~d~~~-~~~------~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~-------  182 (310)
                      .           .....|+.++.+. +.+      ..+. ....|++++++|++++||+++..+++|++|+++       
T Consensus       217 ~-----------~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~  284 (496)
T 3kya_A          217 G-----------DESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK  284 (496)
T ss_dssp             G-----------GGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred             c-----------ccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence            0           0123478886544 233      2333 466899999999877899999999999999997       


Q ss_pred             CCCCCc---------ceeeeeC--CCCCCeeEECCCCC-EEEEEecCCccceeeeeeccccc---cE-----Eeec-cc-
Q 046018          183 GPNSGK---------QDVFAEL--PGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWLG---KT-----LLKL-PL-  240 (310)
Q Consensus       183 ~~~~~~---------~~~~~~~--~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~g---~~-----~~~~-~~-  240 (310)
                      ++....         ...+...  ...|.+|+++++|+ |||++..+++     |.+++.++   .+     +.-. .. 
T Consensus       285 tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~-----I~kid~dg~~~~~~~~~~~aG~~g~~  359 (496)
T 3kya_A          285 NGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY-----FMRSDYDEIKKEFITPYNFVGGYKQS  359 (496)
T ss_dssp             TTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE-----EEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred             CceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE-----EEEEecCCCcceecccEEecCCCCCC
Confidence            443300         1122222  24688999999998 8999988776     44433222   11     1110 00 


Q ss_pred             ----------hhhhhc-ccccC---------------CCCceEEEEECCCCCEEEEEEcC--------------CC----
Q 046018          241 ----------SFRQLH-SLLVG---------------GKPHATAIKLSEKGEVLEVLEDC--------------EG----  276 (310)
Q Consensus       241 ----------~~~~~~-~~~~~---------------~~~~~~~~~~d~~g~~~~~~~~~--------------~g----  276 (310)
                                ....|. .++..               ......+-+++++|.+.......              +|    
T Consensus       360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~  439 (496)
T 3kya_A          360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLRE  439 (496)
T ss_dssp             CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTT
T ss_pred             cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchh
Confidence                      011222 22221               11223555788888766554321              22    


Q ss_pred             -CeecceeEEEEeC--CEEEEecCCCCeEEEeccc
Q 046018          277 -KTLSFISEVEEKD--GQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       277 -~~~~~~~~~~~~~--g~l~vgs~~~~~i~~~~~~  308 (310)
                       ..+..++.++...  |.|||+...+.+|.++++-
T Consensus       440 ~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          440 VARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             TCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             hhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence             1466778887663  8999999999999998763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.2e-16  Score=155.21  Aligned_cols=263  Identities=12%  Similarity=0.099  Sum_probs=175.5

Q ss_pred             ccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccc----cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCe
Q 046018            6 VADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIE----HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGL   79 (310)
Q Consensus         6 ~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~   79 (310)
                      +....|..+..+.++  |+++...||.+++..+..+....    .....+..|+.|+ +|+||+++...||+++++++++
T Consensus       360 l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          360 LSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWFGTYLGNISYYNTRLKK  438 (781)
T ss_dssp             CSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEEEETTEEEEEECSSSCE
T ss_pred             CCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEEEeccCCEEEEcCCCCc
Confidence            345678888888766  99887899999987664333221    1124566888888 8999999887899999999888


Q ss_pred             EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC------cc
Q 046018           80 ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL------AF  153 (310)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~------~~  153 (310)
                      ++.+...  ......+.+|+.|++|+ ||+++                   .+.|+++|+++++++......      ..
T Consensus       439 ~~~~~~~--~~~~~~v~~i~~d~~g~-lwigt-------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  496 (781)
T 3v9f_A          439 FQIIELE--KNELLDVRVFYEDKNKK-IWIGT-------------------HAGVFVIDLASKKVIHHYDTSNSQLLENF  496 (781)
T ss_dssp             EEECCST--TTCCCCEEEEEECTTSE-EEEEE-------------------TTEEEEEESSSSSCCEEECTTTSSCSCSC
T ss_pred             EEEeccC--CCCCCeEEEEEECCCCC-EEEEE-------------------CCceEEEeCCCCeEEecccCcccccccce
Confidence            7655321  22334677899999998 99998                   356999999887766544221      23


Q ss_pred             cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC----CCCeeEECCCCCEEEEEecCCccceeee-eec
Q 046018          154 ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG----FPDNVRSNSNGEFWVALHAKKGLFGKLI-LLN  228 (310)
Q Consensus       154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~p~~i~~d~~G~l~va~~~~~~~~~~~i-~~~  228 (310)
                      ...|+.+++|+ ||++ +..+.|++++++++   ....+....+    ....++.|++|+||+++. .+      + .++
T Consensus       497 i~~i~~d~~g~-lWig-t~~~Gl~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G------lv~~~  564 (781)
T 3v9f_A          497 VRSIAQDSEGR-FWIG-TFGGGVGIYTPDMQ---LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG------LVCFP  564 (781)
T ss_dssp             EEEEEECTTCC-EEEE-ESSSCEEEECTTCC---EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE------EEEES
T ss_pred             eEEEEEcCCCC-EEEE-EcCCCEEEEeCCCC---eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC------ceEEE
Confidence            56788888887 8887 44467999987643   2222322112    235688999999999997 34      4 666


Q ss_pred             cccccEEeeccchhhh----hc--------ccccCCCCceEEEEECCCCCEEEEEEcCCCCeeccee--EEE-EeCCEEE
Q 046018          229 SWLGKTLLKLPLSFRQ----LH--------SLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFIS--EVE-EKDGQLW  293 (310)
Q Consensus       229 ~~~g~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~--~~~-~~~g~l~  293 (310)
                      ++....+..+......    ..        .+|++..  ..+.+++++.+.+..+...+|.+...+.  +++ ..+|+||
T Consensus       565 d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~--~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~  642 (781)
T 3v9f_A          565 SARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN--TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIY  642 (781)
T ss_dssp             CTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS--SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEE
T ss_pred             CCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC--CceEEEECCCCceEEecccCCccccccccCceEECCCCEEE
Confidence            5544333333221111    11        2333332  2467889888888888777776555442  333 3589999


Q ss_pred             EecCCCCeEEEecc
Q 046018          294 MGSVLMPFIGIYNR  307 (310)
Q Consensus       294 vgs~~~~~i~~~~~  307 (310)
                      +|+  .+++.+|+.
T Consensus       643 ~g~--~~Gl~~f~p  654 (781)
T 3v9f_A          643 FGS--INGLCFFNP  654 (781)
T ss_dssp             EEE--TTEEEEECS
T ss_pred             EEC--CCceEEECh
Confidence            999  467888875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.72  E-value=3.1e-16  Score=147.95  Aligned_cols=191  Identities=19%  Similarity=0.233  Sum_probs=143.8

Q ss_pred             cccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCcccc-ccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeE
Q 046018            5 GVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEH-ICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLA   80 (310)
Q Consensus         5 ~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~   80 (310)
                      ++.......++...+.  |.+.....+.+++..+...+.+.. ....|.|||+|+..++||+++... .|.++++++...
T Consensus        35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred             CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence            3344445667765555  888877778887776633222222 236799999997678999999874 599999987765


Q ss_pred             EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEe
Q 046018           81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALS  160 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~  160 (310)
                      +.+..    ..+..|++|++||....||+++.+                ..++|.++++++...+.+...+..|+||+++
T Consensus       115 ~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD  174 (628)
T 4a0p_A          115 QVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRANGLTID  174 (628)
T ss_dssp             EEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEEEEEEE
T ss_pred             EEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcceEEEc
Confidence            44432    234579999999854449999953                2568999999877677777788899999999


Q ss_pred             cCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +++++|||++...++|+++++++...   +.+......|.+++++. ++||++++..+.
T Consensus       175 ~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l~~P~glav~~-~~ly~tD~~~~~  229 (628)
T 4a0p_A          175 YAKRRLYWTDLDTNLIESSNMLGLNR---EVIADDLPHPFGLTQYQ-DYIYWTDWSRRS  229 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSC---EEEEECCSCEEEEEEET-TEEEEEETTTTE
T ss_pred             cccCEEEEEECCCCEEEEEcCCCCce---EEeeccCCCceEEEEEC-CEEEEecCCCCE
Confidence            99888999999999999999987432   34444345799999987 789999987765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.72  E-value=2.7e-15  Score=141.40  Aligned_cols=187  Identities=16%  Similarity=0.203  Sum_probs=132.0

Q ss_pred             cEEEEEeCCCCC--eEEEEEeccccccccCCCC-Cc-cccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEE
Q 046018            9 GRILKWQGDELG--WTEFAVTTSQRKECVRPFA-PD-IEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQL   83 (310)
Q Consensus         9 ~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~-~~-~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~   83 (310)
                      .....++...+.  |.+.....+.+++..+... +. +......|.|||+|+..++||+++... .|.++++++...+.+
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l  121 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL  121 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE
Confidence            344556665555  8887777777776655321 11 222336899999998778999999875 499999998765545


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRD  162 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d  162 (310)
                      ..    ..+..|++|++||.+.+||+++.+                ..++|.+.++++...+.+. ..+..|+||+++++
T Consensus       122 ~~----~~l~~P~~Iavdp~~g~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~  181 (619)
T 3s94_A          122 FW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE  181 (619)
T ss_dssp             EC----SSCSCCCCEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETT
T ss_pred             Ee----CCCCCCceEEEecCCCeEEEeccC----------------CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEcc
Confidence            42    245689999999975559999954                2568999998865454443 56778999999998


Q ss_pred             CCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCc
Q 046018          163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +++|||++...++|++++.+|...   ..+.. ....|.+|+++++ +||++++..+.
T Consensus       182 ~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~  235 (619)
T 3s94_A          182 EQKLYWADAKLNFIHKSNLDGTNR---QAVVKGSLPHPFALTLFED-ILYWTDWSTHS  235 (619)
T ss_dssp             TTEEEEEETTTCCEEEESSSCCEE---C---------CCCEEESSS-EEEEECTTTCS
T ss_pred             CCEEEEEeCCCCeEEEecCCCCcc---EEEEeCCCCCceEEEEeCC-EEEEecCCCCE
Confidence            888999999999999999987421   22222 2357899999876 89999988776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.71  E-value=4.6e-15  Score=144.30  Aligned_cols=265  Identities=15%  Similarity=0.174  Sum_probs=176.4

Q ss_pred             ccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCcccc-------ccceeceEEEeCCCCcEEEEECCCceEEEeCC
Q 046018            6 VADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEH-------ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPE   76 (310)
Q Consensus         6 ~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~   76 (310)
                      +.+..|..+..|.++  |+++...|+.++++....|.....       .......|+.|+ +|+||+++..+||.++++.
T Consensus       307 l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~lWiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          307 LSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNLWIGTNDGGLNLYNPI  385 (795)
T ss_dssp             CSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCEEEEESSSCEEEECTT
T ss_pred             CCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCEEEEECCCCeEEEcCC
Confidence            445678888888877  998888999999887655543322       123466888998 9999999998899999999


Q ss_pred             CCeEEEEEeec---C-CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC--
Q 046018           77 GGLATQLVTEA---A-GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG--  150 (310)
Q Consensus        77 ~~~~~~~~~~~---~-~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--  150 (310)
                      +++++.+....   . ......+.+++.|++|+.||+++.                  .+.|+++|+++++++.+...  
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~------------------~~Gl~~~d~~~~~~~~~~~~~~  447 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH------------------AGGLSILHRNSGQVENFNQRNS  447 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET------------------TTEEEEEETTTCCEEEECTTTS
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC------------------cCceeEEeCCCCcEEEeecCCC
Confidence            88876653221   0 122345678889999875899872                  45699999998888765431  


Q ss_pred             ---CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee------CC-CCCCeeEECCCCCEEEEEecCCcc
Q 046018          151 ---LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE------LP-GFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       151 ---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~------~~-~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                         ......|+.+++++ ||++..  ++|++|+++++.   ...+..      ++ .....++.|++|+||+++. ++  
T Consensus       448 ~l~~~~v~~i~~d~~g~-lwigt~--~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G--  518 (795)
T 4a2l_A          448 QLVNENVYAILPDGEGN-LWLGTL--SALVRFNPEQRS---FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG--  518 (795)
T ss_dssp             CCSCSCEEEEEECSSSC-EEEEES--SCEEEEETTTTE---EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC--
T ss_pred             CcCCCeeEEEEECCCCC-EEEEec--CceeEEeCCCCe---EEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc--
Confidence               12245677777776 888753  689999986432   222211      11 2345688999999999997 44  


Q ss_pred             ceeeeeeccccccEEeecc-------chhhhhcc--------cccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEE
Q 046018          221 FGKLILLNSWLGKTLLKLP-------LSFRQLHS--------LLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEV  285 (310)
Q Consensus       221 ~~~~i~~~~~~g~~~~~~~-------~~~~~~~~--------~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~  285 (310)
                          +.++++....+ .+.       .+...+.+        +|++...  .+.+++++...++.+...+|.+...+..+
T Consensus       519 ----l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i  591 (795)
T 4a2l_A          519 ----LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEKDKQIKRYNTTNGLPNNVVYGI  591 (795)
T ss_dssp             ----EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS--CEEEEETTTTEEEEECGGGTCSCSCEEEE
T ss_pred             ----eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC--CceeECCCCCcEEEeCCCCCCchhheEEE
Confidence                55554433322 211       11111122        2333222  46678887777777766667665667777


Q ss_pred             EEe-CCEEEEecCCCCeEEEecc
Q 046018          286 EEK-DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       286 ~~~-~g~l~vgs~~~~~i~~~~~  307 (310)
                      +.. +|+||+++  ..+|.+++.
T Consensus       592 ~~d~~g~lWi~t--~~Gl~~~~~  612 (795)
T 4a2l_A          592 LEDSFGRLWLST--NRGISCFNP  612 (795)
T ss_dssp             EECTTSCEEEEE--TTEEEEEET
T ss_pred             EECCCCCEEEEc--CCceEEEcC
Confidence            654 78999999  578988875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.71  E-value=3.5e-15  Score=140.78  Aligned_cols=196  Identities=16%  Similarity=0.171  Sum_probs=140.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..|.+|++|+.+++||+++... .|+++++++...+.+...    ....|.+||+|+.++.||+++..            
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~----g~~~P~GlAvD~~~~~LY~tD~~------------  100 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF----GLDYPEGMAVDWLGKNLYWADTG------------  100 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SCSCCCEEEEETTTTEEEEEETT------------
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC----CCCCcceEEEEeCCCEEEEEECC------------
Confidence            5789999998789999999875 599999988765555432    23579999999875569999964            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecC-CceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETS-NCRILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                           .++|.++++++...+.+. ..+..|++|+++|..+.|||++.+ ..+|++++++|..   ...+...-..|.+++
T Consensus       101 -----~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---~~~l~~~~~~P~Gla  172 (628)
T 4a0p_A          101 -----TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---RTTLVPNVGRANGLT  172 (628)
T ss_dssp             -----TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSCSSEEEEE
T ss_pred             -----CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---eEEEECCCCCcceEE
Confidence                 678999999866555544 667889999999977789999976 6899999998753   233333335799999


Q ss_pred             ECCC-CCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecce
Q 046018          204 SNSN-GEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFI  282 (310)
Q Consensus       204 ~d~~-G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~  282 (310)
                      +|++ ++||+++...+.     |                                 .+++.+|...+.+..  +  +..+
T Consensus       173 lD~~~~~LY~aD~~~~~-----I---------------------------------~~~d~dG~~~~v~~~--~--l~~P  210 (628)
T 4a0p_A          173 IDYAKRRLYWTDLDTNL-----I---------------------------------ESSNMLGLNREVIAD--D--LPHP  210 (628)
T ss_dssp             EETTTTEEEEEETTTTE-----E---------------------------------EEEETTSCSCEEEEE--C--CSCE
T ss_pred             EccccCEEEEEECCCCE-----E---------------------------------EEEcCCCCceEEeec--c--CCCc
Confidence            9985 689999976653     2                                 223333321122221  1  2335


Q ss_pred             eEEEEeCCEEEEecCCCCeEEEeccc
Q 046018          283 SEVEEKDGQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       283 ~~~~~~~g~l~vgs~~~~~i~~~~~~  308 (310)
                      .+++..+++||+..+.+..|.+++++
T Consensus       211 ~glav~~~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          211 FGLTQYQDYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             eEEEEECCEEEEecCCCCEEEEEECC
Confidence            56666677888888877888887764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.71  E-value=3e-15  Score=126.15  Aligned_cols=153  Identities=20%  Similarity=0.313  Sum_probs=108.0

Q ss_pred             eeceEEEeCCCCcEEE-EECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYI-ADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v-~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .|.+|++++ +|+||+ ++.. .+|.++++.+.....+.    ......|.+|+++++|+ +|+++.             
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~-l~v~~~-------------   85 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLP----FNGLYQPQGLAVDGAGT-VYVTDF-------------   85 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECC----CCSCCSCCCEEECTTCC-EEEEET-------------
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEe----eCCcCCcceeEECCCCC-EEEEcC-------------
Confidence            899999999 889999 7655 46999998766543221    12335789999999999 999982             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~  203 (310)
                           .+.|++||++++....+. .....|.+|+++++++ ||+++..+++|++++.....   ...... ....|.+++
T Consensus        86 -----~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~  156 (270)
T 1rwi_B           86 -----NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT---QTVLPFTGLNDPDGVA  156 (270)
T ss_dssp             -----TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS---CEECCCCSCCSCCCEE
T ss_pred             -----CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce---eEeeccccCCCceeEE
Confidence                 467999999876554433 3346799999999987 99998888999999643221   111111 124689999


Q ss_pred             ECCCCCEEEEEecCCccceeeeeecccccc
Q 046018          204 SNSNGEFWVALHAKKGLFGKLILLNSWLGK  233 (310)
Q Consensus       204 ~d~~G~l~va~~~~~~~~~~~i~~~~~~g~  233 (310)
                      +|++|+||+++...+.     +..++..+.
T Consensus       157 ~~~~g~l~v~~~~~~~-----i~~~~~~~~  181 (270)
T 1rwi_B          157 VDNSGNVYVTDTDNNR-----VVKLEAESN  181 (270)
T ss_dssp             ECTTCCEEEEEGGGTE-----EEEECTTTC
T ss_pred             EeCCCCEEEEECCCCE-----EEEEecCCC
Confidence            9999999999876554     455554444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=1.2e-15  Score=133.07  Aligned_cols=222  Identities=8%  Similarity=0.018  Sum_probs=147.4

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..|.+|+++  +++||++.... .|.++|+++++......     ....|.+|+++++|+ +|+++..            
T Consensus        44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-----~~~~p~~i~~~~~g~-lyv~~~~------------  103 (328)
T 3dsm_A           44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-----GFTSPRYIHFLSDEK-AYVTQIW------------  103 (328)
T ss_dssp             SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-----CCSSEEEEEEEETTE-EEEEEBS------------
T ss_pred             ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-----CCCCCcEEEEeCCCe-EEEEECC------------
Confidence            457889986  47899999864 49999999887643222     134789999999996 9999842            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCc------ccceEEEecCCCeEEEEec-CCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLA------FANGVALSRDRTFILIAET-SNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~------~~~gi~~~~d~~~lyv~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                           .+.|.++|+++++.........      .|.+|++  +++.||+++. .++.|.++|+++.+.   .........
T Consensus       104 -----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~---~~~i~~g~~  173 (328)
T 3dsm_A          104 -----DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV---VDELTIGIQ  173 (328)
T ss_dssp             -----CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE---EEEEECSSC
T ss_pred             -----CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE---EEEEEcCCC
Confidence                 6789999999888764443344      7999999  4556999987 488999999875321   111223456


Q ss_pred             CCeeEECCCCCEEEEEecC----------Cccceeeeeec-cccccEEeeccchh-hhhcccccCCCCceEEEEECCCCC
Q 046018          199 PDNVRSNSNGEFWVALHAK----------KGLFGKLILLN-SWLGKTLLKLPLSF-RQLHSLLVGGKPHATAIKLSEKGE  266 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~----------~~~~~~~i~~~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~g~  266 (310)
                      |.++++|++|++|+++...          +.     +..+ ..+++....+..+. ..|..+++......+++ .+.  .
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-----v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv-~~~--~  245 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-----LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW-INN--D  245 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-----EEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE-ESS--S
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCce-----EEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE-Ecc--E
Confidence            8999999999999998764          33     4444 44566666665542 24555555543333332 111  1


Q ss_pred             EEEEEEcCCCC----e-----ecceeEEEEe--CCEEEEec----CCCCeEEEecc
Q 046018          267 VLEVLEDCEGK----T-----LSFISEVEEK--DGQLWMGS----VLMPFIGIYNR  307 (310)
Q Consensus       267 ~~~~~~~~~g~----~-----~~~~~~~~~~--~g~l~vgs----~~~~~i~~~~~  307 (310)
                       +..+....+.    .     ...+..++..  +++||+++    ..++.|.+|+.
T Consensus       246 -v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          246 -IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             -EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             -EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence             1122211111    0     1345666553  78999998    77889999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.70  E-value=4.9e-15  Score=126.16  Aligned_cols=167  Identities=20%  Similarity=0.291  Sum_probs=118.8

Q ss_pred             cceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeec-CCccccCCcceEE-eCCCCEEEEEeCCCchhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEA-AGQPLRFTNDLDI-DEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~-d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ...|.++++++ +|+||+++.. ++|.++|+++..+..+.... .......|.++++ +++|+ +|+++..         
T Consensus        29 ~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~---------   97 (286)
T 1q7f_A           29 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERS---------   97 (286)
T ss_dssp             BSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECG---------
T ss_pred             cCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCC---------
Confidence            46799999999 8999999876 45999999866544442211 1123357899999 47887 9999832         


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFP  199 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p  199 (310)
                             ..+.|++||+++.....+.. ....|++|+++++++ +|+++..+++|++|++++..   ...+..  ....|
T Consensus        98 -------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~---~~~~~~~~~~~~p  166 (286)
T 1q7f_A           98 -------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV---LHKFGCSKHLEFP  166 (286)
T ss_dssp             -------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE---EEEEECTTTCSSE
T ss_pred             -------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCE---EEEeCCCCccCCc
Confidence                   15679999976544443432 345689999999997 99999888999999976431   122221  12468


Q ss_pred             CeeEECCCCCEEEEEecCCccceeeeeeccccccEEeecc
Q 046018          200 DNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLP  239 (310)
Q Consensus       200 ~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~  239 (310)
                      .++++|++|++|+++...+.     |..++..++.+..+.
T Consensus       167 ~~i~~~~~g~l~v~~~~~~~-----i~~~~~~g~~~~~~~  201 (286)
T 1q7f_A          167 NGVVVNDKQEIFISDNRAHC-----VKVFNYEGQYLRQIG  201 (286)
T ss_dssp             EEEEECSSSEEEEEEGGGTE-----EEEEETTCCEEEEES
T ss_pred             EEEEECCCCCEEEEECCCCE-----EEEEcCCCCEEEEEc
Confidence            99999999999999876654     566666777665553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=1.8e-15  Score=131.92  Aligned_cols=196  Identities=12%  Similarity=-0.034  Sum_probs=127.7

Q ss_pred             eEEE-EEeccccccccCCCCCccccccc------eeceEEEeCCCCcEEEEECC--CceEEEeCCCCeEEEEEeecCCcc
Q 046018           21 WTEF-AVTTSQRKECVRPFAPDIEHICG------RPLGIRFDKKTGDLYIADAY--LGFQVVGPEGGLATQLVTEAAGQP   91 (310)
Q Consensus        21 W~~~-~~~~~~~~~~~~~~~~~~~~~~~------~p~gl~~d~~~g~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~   91 (310)
                      |+.. ....+..+|..+.+.........      .|.+|++ . +++||+++..  +.|.++|++++++......     
T Consensus        98 yv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-----  170 (328)
T 3dsm_A           98 YVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI-----  170 (328)
T ss_dssp             EEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC-----
T ss_pred             EEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-----
Confidence            5544 34556666765532222222233      7999999 4 7899999863  4599999998876543332     


Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec--CCcccceEEEecCCCeEEEE
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ--GLAFANGVALSRDRTFILIA  169 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~~~gi~~~~d~~~lyv~  169 (310)
                      ...|++++++++|+ +|++........      .+ ....+.|+++|+++++......  ....|++++++||+++||++
T Consensus       171 g~~p~~i~~~~dG~-l~v~~~~~~~~~------~~-~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~  242 (328)
T 3dsm_A          171 GIQPTSLVMDKYNK-MWTITDGGYEGS------PY-GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI  242 (328)
T ss_dssp             SSCBCCCEECTTSE-EEEEBCCBCTTC------SS-CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred             CCCccceEEcCCCC-EEEEECCCccCC------cc-ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE
Confidence            23689999999999 999985421000      00 0013689999999887764322  23479999999999999998


Q ss_pred             ecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC-CCCEEEEE----ecCCccceeeeeeccccccEEeecc
Q 046018          170 ETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS-NGEFWVAL----HAKKGLFGKLILLNSWLGKTLLKLP  239 (310)
Q Consensus       170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~va~----~~~~~~~~~~i~~~~~~g~~~~~~~  239 (310)
                      +.   .|+++|+++++.............|++|++|+ +|+|||++    ...+.     |.++++.|+.+..++
T Consensus       243 ~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~-----V~v~d~~g~~~~~i~  309 (328)
T 3dsm_A          243 NN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI-----VYRYSPQGKLIDEFY  309 (328)
T ss_dssp             SS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE-----EEEECTTCCEEEEEE
T ss_pred             cc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE-----EEEECCCCCEEEEEE
Confidence            65   89999987653321111111135799999998 78999998    44333     455555566555554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.68  E-value=1.3e-16  Score=152.41  Aligned_cols=208  Identities=14%  Similarity=0.173  Sum_probs=141.4

Q ss_pred             EEEeCCCCC--eEEEEEeccccccccC----CCCCcc-ccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEE
Q 046018           12 LKWQGDELG--WTEFAVTTSQRKECVR----PFAPDI-EHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQL   83 (310)
Q Consensus        12 ~~~~~~~~~--W~~~~~~~~~~~~~~~----~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~   83 (310)
                      ..|+...+.  |++.....|.+++..+    .....+ ......|.||++++..++||+++.. +.|.++++++...+.+
T Consensus       411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l  490 (699)
T 1n7d_A          411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL  490 (699)
T ss_dssp             CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEE
T ss_pred             EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEE
Confidence            345554444  6666666677766553    111222 2234679999999658899999877 4599999997765544


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRD  162 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d  162 (310)
                      +.    ..+..|++|+++|++++||+++..                ..+.|+++++++...+++. ..+..|+||+++++
T Consensus       491 ~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~  550 (699)
T 1n7d_A          491 FR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL  550 (699)
T ss_dssp             CC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTT
T ss_pred             Ee----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCCCCCccEEEEecc
Confidence            32    234579999999964449999853                1367999988754444333 45778999999999


Q ss_pred             CCeEEEEecCCceEEEEEccCCCCCcceeeee---CCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018          163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL  238 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~  238 (310)
                      +++|||+++.+++|+++++++..   ...+..   ....|.+|+++.+ +||++++..+.     |.+++ .+|+.+..+
T Consensus       551 ~~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-----V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          551 SGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-----IFSANRLTGSDVNLL  621 (699)
T ss_dssp             TCCEEEEETTTTEEEEECSSSSC---CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-----EEEEETTTEEEEECC
T ss_pred             CCEEEEEecCCCeEEEEccCCCc---eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-----EEEEEccCCCceEEe
Confidence            88899999999999999998632   233322   1257899999875 68888887766     55554 467777777


Q ss_pred             cchhhhhccc
Q 046018          239 PLSFRQLHSL  248 (310)
Q Consensus       239 ~~~~~~~~~~  248 (310)
                      ..+...|..+
T Consensus       622 ~~~~~~P~~i  631 (699)
T 1n7d_A          622 AENLLSPEDM  631 (699)
T ss_dssp             CTTCSSCCCC
T ss_pred             ecCCCCCcEE
Confidence            6554444444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.68  E-value=6.6e-16  Score=147.63  Aligned_cols=168  Identities=11%  Similarity=0.131  Sum_probs=114.8

Q ss_pred             cccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCC----CeEEEEEeecCCccccCCcceEEeCC
Q 046018           29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEG----GLATQLVTEAAGQPLRFTNDLDIDEH  103 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~----~~~~~~~~~~~~~~~~~~~~i~~d~~  103 (310)
                      +.+++..+.....+......|.+|++++.++.||+++... .|+++++++    .....+.    ...+..|.+|++++.
T Consensus       388 I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i----~~~~~~P~glavD~~  463 (699)
T 1n7d_A          388 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----SRDIQAPDGLAVDWI  463 (699)
T ss_dssp             -CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC----CSCC--CCCEECCCS
T ss_pred             eEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE----eCCCCCcceEEEEee
Confidence            4444444422223333456899999998788999999874 599999886    2211111    122446899999954


Q ss_pred             CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCC-ceEEEEEc
Q 046018          104 KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSN-CRILRFWL  181 (310)
Q Consensus       104 g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~~~~  181 (310)
                      ++.||+++..                 .++|.++++++...+.+. ..+..|++|+++|++++|||++... ++|+++++
T Consensus       464 ~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~  526 (699)
T 1n7d_A          464 HSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  526 (699)
T ss_dssp             SSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred             CCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence            4339999854                 678999999876655554 3467899999999877899998765 89999998


Q ss_pred             cCCCCCcceeeeeCCCCCCeeEECCC-CCEEEEEecCCc
Q 046018          182 HGPNSGKQDVFAELPGFPDNVRSNSN-GEFWVALHAKKG  219 (310)
Q Consensus       182 ~~~~~~~~~~~~~~~~~p~~i~~d~~-G~l~va~~~~~~  219 (310)
                      ++...  ..++......|++|++|++ ++||+++...+.
T Consensus       527 dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~  563 (699)
T 1n7d_A          527 NGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  563 (699)
T ss_dssp             SSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred             CCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence            86422  1122222357999999975 689999976553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.67  E-value=1.1e-14  Score=137.10  Aligned_cols=154  Identities=16%  Similarity=0.126  Sum_probs=113.0

Q ss_pred             ccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      ......|.+|++++.+++||+++... .|+++++++... +.+..    .....|++||+|+.++.||+++..       
T Consensus        36 ~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~----~~~~~P~GlAvD~~~~~ly~~d~~-------  104 (619)
T 3s94_A           36 VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----SGLLSPDGLACDWLGEKLYWTDSE-------  104 (619)
T ss_dssp             CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC----SSCSCEEEEEEETTTTEEEEEETT-------
T ss_pred             EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe----CCCCCcCeEEEEecCCEEEEEeCC-------
Confidence            33456899999998788999999874 599999987532 22222    134579999999965569999954       


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecC-CceEEEEEccCCCCCcceeeeeCCCC
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETS-NCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                                .++|.++++++...+++. ..+..|++|+++|.++.|||++.+ ..+|++.+++|...  .......-..
T Consensus       105 ----------~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~--~~l~~~~~~~  172 (619)
T 3s94_A          105 ----------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--FIIINSEIYW  172 (619)
T ss_dssp             ----------TTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEECSSCSS
T ss_pred             ----------CCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce--EEEEeCCCCC
Confidence                      678999999866555554 677889999999987789999976 57999999987422  1222223357


Q ss_pred             CCeeEECC-CCCEEEEEecCCc
Q 046018          199 PDNVRSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       199 p~~i~~d~-~G~l~va~~~~~~  219 (310)
                      |.+|++|+ +++||+++...+.
T Consensus       173 P~Glald~~~~~LY~aD~~~~~  194 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAKLNF  194 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTCC
T ss_pred             CcEEEEEccCCEEEEEeCCCCe
Confidence            99999997 4789999876654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.66  E-value=3.7e-15  Score=143.46  Aligned_cols=184  Identities=15%  Similarity=0.185  Sum_probs=129.2

Q ss_pred             EEEeCCCCC--eEEEEEeccccccccCC----CCCcc-ccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEE
Q 046018           12 LKWQGDELG--WTEFAVTTSQRKECVRP----FAPDI-EHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQL   83 (310)
Q Consensus        12 ~~~~~~~~~--W~~~~~~~~~~~~~~~~----~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~   83 (310)
                      +.++...+.  |++.....|.+++..+.    ....+ ......|.|||+|+..++||+++... .|.++++++...+.+
T Consensus       429 l~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l  508 (791)
T 3m0c_C          429 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL  508 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE
T ss_pred             EeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE
Confidence            344443333  77665555666555431    11122 22457899999998677999999884 599999998776555


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRD  162 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d  162 (310)
                      +..    .+..|++|++|+.+.+||+++.+                ..++|.++++++...+.+. ..+..|+||++++.
T Consensus       509 ~~~----~l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~  568 (791)
T 3m0c_C          509 FRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL  568 (791)
T ss_dssp             EEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETT
T ss_pred             EeC----CCCCcceEEEecCCCCEEEecCC----------------CCCeEEEEecCCCceEEEEeCCCCCceEEEEecC
Confidence            432    34579999999975559999954                1368999999866555544 45678999999998


Q ss_pred             CCeEEEEecCCceEEEEEccCCCCCcceeeeeC---CCCCCeeEECCCCCEEEEEecCCc
Q 046018          163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAEL---PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +++|||++...++|++++++|...   ..+...   -..|.+|+++. ++||++++..+.
T Consensus       569 ~~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~  624 (791)
T 3m0c_C          569 SGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA  624 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEET-TEEEEEETTTTE
T ss_pred             CCeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCCCEEEEeC-CEEEEEECCCCE
Confidence            888999999999999999987522   223221   13577888864 589999988775

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=8.8e-15  Score=127.58  Aligned_cols=167  Identities=14%  Similarity=0.153  Sum_probs=109.9

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCC--eEEEEEeec----CCccccCCcceEEeC-CCCEEEEEeCCCchhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGG--LATQLVTEA----AGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQR  118 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~--~~~~~~~~~----~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~  118 (310)
                      ..|.+|++++ +|+||+++... .|.++++++.  .+..+....    .......|++|++++ +|+ +|+++..     
T Consensus        91 ~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~-----  163 (329)
T 3fvz_A           91 YLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGY-----  163 (329)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECS-----
T ss_pred             CCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCC-----
Confidence            5899999999 89999999874 5999999876  333332211    022345799999999 888 9999941     


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEec----------CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCc
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQ----------GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGK  188 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~  188 (310)
                                 ..++|.+|++++.....+..          .+..|++|+++|+++.|||++..+++|.+|++++++.  
T Consensus       164 -----------~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--  230 (329)
T 3fvz_A          164 -----------CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--  230 (329)
T ss_dssp             -----------SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--
T ss_pred             -----------CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--
Confidence                       16789999976444443321          1234999999999667999999999999999873211  


Q ss_pred             ceeeee--CCCCCCeeEEC------CCCCEEEEEecCCccceeeeeec-cccccEEeec
Q 046018          189 QDVFAE--LPGFPDNVRSN------SNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKL  238 (310)
Q Consensus       189 ~~~~~~--~~~~p~~i~~d------~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~  238 (310)
                      ...+..  ....|.++++.      .+|++|+++.....     +..+ ...++.+..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~-----v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          231 VREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQ-----GFVMNFSSGEIIDVF  284 (329)
T ss_dssp             EEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCC-----EEEEETTTCCEEEEE
T ss_pred             EEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcE-----EEEEEcCCCeEEEEE
Confidence            111211  11233444444      46666666555444     3333 3567766654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.65  E-value=1.5e-13  Score=123.52  Aligned_cols=148  Identities=12%  Similarity=0.099  Sum_probs=108.1

Q ss_pred             ccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ....|.+|++++ +|+||+++.. +.|.++|++++.++.+...     ...+. ++++++|++||+++..          
T Consensus       129 ~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----~~~~~-ia~~~~g~~l~~~d~~----------  191 (409)
T 3hrp_A          129 KFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----FKGGK-PAVTKDKQRVYSIGWE----------  191 (409)
T ss_dssp             CCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET-----CCBCB-CEECTTSSEEEEEBSS----------
T ss_pred             ccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc-----CCCCc-eeEecCCCcEEEEecC----------
Confidence            357899999998 8999999987 4599999998887766432     23466 9999999988988743          


Q ss_pred             hhhcCCCCceEEEEeCCCCeE-EEE----ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee----
Q 046018          124 SILSGDKTGRLLKYEKTTKEV-TIL----LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE----  194 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~-~~~----~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~----  194 (310)
                            ....|++++++++.. ..+    ......|++++++|+++.||+++. +++|++|+++++.   ...+..    
T Consensus       192 ------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~---~~~~~~~~~~  261 (409)
T 3hrp_A          192 ------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQE---VTLIKQLELS  261 (409)
T ss_dssp             ------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTCC---EEEEEECCCC
T ss_pred             ------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCC---EEEEeccccc
Confidence                  123799999876543 222    124567999999996667999764 7899999987542   222311    


Q ss_pred             --CCCCCC-eeEECC-CCCEEEEEecCCc
Q 046018          195 --LPGFPD-NVRSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       195 --~~~~p~-~i~~d~-~G~l~va~~~~~~  219 (310)
                        ....|. ++++++ +|+||+++...+.
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~  290 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSS  290 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence              111255 999999 5899999877664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=7.5e-15  Score=132.74  Aligned_cols=152  Identities=10%  Similarity=0.136  Sum_probs=113.3

Q ss_pred             cceeceEEEeC-CCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDK-KTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~-~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ...|.+|++|+ ++++||+++..+.|.++|++++.++.+..     ....|++|+++++|++||+++....         
T Consensus       136 ~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----~~~~P~~ia~d~~G~~lyvad~~~~---------  201 (430)
T 3tc9_A          136 FGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-----GLSKVRTICWTHEADSMIITNDQNN---------  201 (430)
T ss_dssp             CSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-----CCSCEEEEEECTTSSEEEEEECCSC---------
T ss_pred             CCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcceEEEeCCCCEEEEEeCCCC---------
Confidence            46899999996 37999999987669999999888765543     3457999999999998999996421         


Q ss_pred             hhcCCCCceEEEEeCCCCeE--EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--CCCCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEV--TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--PGFPD  200 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~  200 (310)
                          .....++.++++++..  ..+ .....|++++++|+++.||+++..+++|++|++++..   ...+...  ...|.
T Consensus       202 ----~~~~~v~~~~~~g~~~~~~~l-~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---~~~~~~~~~~~~P~  273 (430)
T 3tc9_A          202 ----NDRPNNYILTRESGFKVITEL-TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---TTPLFTIQDSGWEF  273 (430)
T ss_dssp             ----TTSEEEEEEEGGGTSCSEEEE-EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---EEEEEECSSSSCCE
T ss_pred             ----cccceEEEEeCCCceeeeeee-ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEEEcCCCCcce
Confidence                1123567777654321  222 2467899999999545599999999999999987542   2122222  24699


Q ss_pred             eeEECCCCC-EEEEEecCCc
Q 046018          201 NVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       201 ~i~~d~~G~-l~va~~~~~~  219 (310)
                      +++++++|+ ||+++...+.
T Consensus       274 gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          274 HIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             EEEECTTSSEEEEEETTTTE
T ss_pred             eEEEcCCCCEEEEEECCCCE
Confidence            999999998 9999987775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.64  E-value=2.4e-13  Score=116.69  Aligned_cols=212  Identities=7%  Similarity=0.005  Sum_probs=142.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .-+.|.+++++++.||+++... .|+++|+++++.+.+ ..     ...+.+++++++|+ +|++.              
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----~~~~~~i~~~~dG~-l~v~~--------------   71 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM-----DAPVSSVALRQSGG-YVATI--------------   71 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC-----SSCEEEEEEBTTSS-EEEEE--------------
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC-----CCceEEEEECCCCC-EEEEE--------------
Confidence            4677999998778999999874 599999998876433 21     13578999999999 99987              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC-----CcccceEEEecCCCeEEEEec-----------CCceEEEEEccCCCCCcc
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG-----LAFANGVALSRDRTFILIAET-----------SNCRILRFWLHGPNSGKQ  189 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~-----------~~~~i~~~~~~~~~~~~~  189 (310)
                           ...|++||+++++.+.+...     ...+++++++|||+ +|+++.           ..++|+++++++.    .
T Consensus        72 -----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~----~  141 (297)
T 3g4e_A           72 -----GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH----V  141 (297)
T ss_dssp             -----TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC----E
T ss_pred             -----CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC----E
Confidence                 45799999998888765432     23478999999998 888763           2358888886532    2


Q ss_pred             eeeeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeecc---ccccE-----EeeccchhhhhcccccCCCC------
Q 046018          190 DVFAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNS---WLGKT-----LLKLPLSFRQLHSLLVGGKP------  254 (310)
Q Consensus       190 ~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~---~~g~~-----~~~~~~~~~~~~~~~~~~~~------  254 (310)
                      ..+......|++++++++|+ ||+++...+.     |..++   .+|..     +..++.....|.++++....      
T Consensus       142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~-----i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYS-----VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             EEEEEEESBEEEEEECTTSCEEEEEEGGGTE-----EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred             EEEeeccccccceEEcCCCCEEEEecCCCCc-----EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            22222224689999999996 8888876665     33332   44443     22222212234444443322      


Q ss_pred             --ceEEEEECCC-CCEEEEEEcCCCCeecceeEEEEe---CCEEEEecCC
Q 046018          255 --HATAIKLSEK-GEVLEVLEDCEGKTLSFISEVEEK---DGQLWMGSVL  298 (310)
Q Consensus       255 --~~~~~~~d~~-g~~~~~~~~~~g~~~~~~~~~~~~---~g~l~vgs~~  298 (310)
                        ...+.+++++ |+++..+..+.    ..++.++..   .++||+++..
T Consensus       217 ~~~~~v~~~d~~tG~~~~~i~~p~----~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          217 YNGGRVIRLDPVTGKRLQTVKLPV----DKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             ETTTEEEEECTTTCCEEEEEECSS----SBEEEEEEESGGGCEEEEEEBC
T ss_pred             cCCCEEEEEcCCCceEEEEEECCC----CCceEEEEeCCCCCEEEEEcCC
Confidence              2346678886 78777776543    235666554   3699999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.63  E-value=1.4e-14  Score=131.00  Aligned_cols=154  Identities=13%  Similarity=0.108  Sum_probs=109.7

Q ss_pred             cceeceEEEeCC--CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           46 CGRPLGIRFDKK--TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        46 ~~~p~gl~~d~~--~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      +..|.+|++|++  +|+||+++..+.|++++++++.++.+..     ....|++|+++++|+ ||+++....        
T Consensus       138 ~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-----~~~~P~giavd~dG~-lyVad~~~~--------  203 (433)
T 4hw6_A          138 FDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-----NIGQCADVNFTLNGD-MVVVDDQSS--------  203 (433)
T ss_dssp             CSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-----CCSCEEEEEECTTCC-EEEEECCSC--------
T ss_pred             cCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-----CCCCccEEEECCCCC-EEEEcCCCC--------
Confidence            468999999982  5999999987679999998888765533     345799999999999 999996421        


Q ss_pred             hhhcCCCCceEEEEeCCCCeE-EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCe
Q 046018          124 SILSGDKTGRLLKYEKTTKEV-TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDN  201 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~  201 (310)
                           .....++.++.+++.. ......+..|++++++|+++.|||++..+++|++++++++... ...+.. ....+.+
T Consensus       204 -----~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          204 -----DTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFH  277 (433)
T ss_dssp             -----TTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEE
T ss_pred             -----cccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEeccCCCCCccc
Confidence                 0122466666543321 1122246789999999954459999999999999998743210 112221 1234567


Q ss_pred             eEECCCCC-EEEEEecCCc
Q 046018          202 VRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       202 i~~d~~G~-l~va~~~~~~  219 (310)
                      +++|++|+ ||+++...+.
T Consensus       278 ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             EEECTTSSEEEEEETTTTE
T ss_pred             EEEeCCCCEEEEEeCCCCE
Confidence            99999998 9999988775

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.62  E-value=5.5e-14  Score=122.10  Aligned_cols=150  Identities=12%  Similarity=0.119  Sum_probs=107.2

Q ss_pred             cceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecC--------C-------ccccCCcceEEeC-CCCEEE
Q 046018           46 CGRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAA--------G-------QPLRFTNDLDIDE-HKGVIY  108 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~--------~-------~~~~~~~~i~~d~-~g~~l~  108 (310)
                      ...|.++++++ +|+ +|+....++|+++++++++++.+.....        +       .....|.+|++++ +|+ ||
T Consensus        18 ~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~   95 (322)
T 2fp8_A           18 SYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY   95 (322)
T ss_dssp             SSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred             cCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence            36799999999 787 7776666779999999877765543110        0       0123689999997 787 99


Q ss_pred             EEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-----CCcccceEEEec-CCCeEEEEecC----------
Q 046018          109 FTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-----GLAFANGVALSR-DRTFILIAETS----------  172 (310)
Q Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~~~gi~~~~-d~~~lyv~~~~----------  172 (310)
                      |++.                  .+.++++|++++..+.+..     ....|+++++++ +|+ +|+++..          
T Consensus        96 v~d~------------------~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           96 IVDC------------------YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             EEET------------------TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHH
T ss_pred             EEEC------------------CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccce
Confidence            9984                  2348999998766555432     134689999999 886 9999865          


Q ss_pred             -------CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          173 -------NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       173 -------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                             .++|++++++++.   ...+......|++|+++++|+ |||++...+.
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~---~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~  208 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKE---TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQ  208 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTE---EEEEEEEESCCCEEEECTTSSEEEEEEGGGTE
T ss_pred             ehcccCCCceEEEEeCCCCE---EEEeccCCccCcceEECCCCCEEEEEeCCCCe
Confidence                   3689999976432   222222224689999999996 9999887654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=2.4e-13  Score=116.33  Aligned_cols=227  Identities=13%  Similarity=0.090  Sum_probs=144.3

Q ss_pred             CccccccceeceEEEeCCCCc-EEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018           40 PDIEHICGRPLGIRFDKKTGD-LYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ  117 (310)
Q Consensus        40 ~~~~~~~~~p~gl~~d~~~g~-l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~  117 (310)
                      +.+......|.++++++ +|+ ||+++.. .+|++++++++ .+.+..     +...|.+|+++++|+ +|+++..    
T Consensus        21 ~~l~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~-----~~~~~~~l~~~~dg~-l~v~~~~----   88 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ-LSPEMH-----PSHHQNGHCLNKQGH-LIACSHG----   88 (296)
T ss_dssp             EEEECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC-EEEEES-----SCSSEEEEEECTTCC-EEEEETT----
T ss_pred             EEEecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC-eEEEEC-----CCCCcceeeECCCCc-EEEEecC----
Confidence            44444456788999999 776 7777765 56999999988 554432     224688999999999 9999843    


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-----CcccceEEEecCCCeEEEEec-----------------CCce
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-----LAFANGVALSRDRTFILIAET-----------------SNCR  175 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~-----------------~~~~  175 (310)
                                   .+.|++||+++++.+.+...     ...|++++++|+|+ +|++++                 ..+.
T Consensus        89 -------------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           89 -------------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             -------------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             -------------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcE
Confidence                         56899999977887765421     23578999999998 899753                 2458


Q ss_pred             EEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccc--cccE---Eeeccchhhhhccccc
Q 046018          176 ILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSW--LGKT---LLKLPLSFRQLHSLLV  250 (310)
Q Consensus       176 i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~--~g~~---~~~~~~~~~~~~~~~~  250 (310)
                      |+++++++    ....+......|.+++++++|++++++...+.     +..++.  .|++   ...+......|.++++
T Consensus       155 l~~~~~~g----~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~-----i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~  225 (296)
T 3e5z_A          155 VFRLAPDG----TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA-----THRYCLNARGETEYQGVHFTVEPGKTDGLRV  225 (296)
T ss_dssp             EEEECTTS----CEEEEECCCSSEEEEEECTTSCEEEEETTTTE-----EEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred             EEEECCCC----CEEEeecCCCCCccEEECCCCCEEEEeCCCCe-----EEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence            99998662    22333333356899999999998776665554     444432  3443   1221112223344444


Q ss_pred             CCCCceEEEEECCCCCEEEEEEcCCCCeecc------eeEEEEe---CCEEEEecCCCCeEEEeccc
Q 046018          251 GGKPHATAIKLSEKGEVLEVLEDCEGKTLSF------ISEVEEK---DGQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       251 ~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~------~~~~~~~---~g~l~vgs~~~~~i~~~~~~  308 (310)
                      ...+. +++.-   +.-+..+ +++|..+..      ++.++..   .+.||+++  .++|++++.-
T Consensus       226 d~~G~-l~v~~---~~~v~~~-~~~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t--~~~l~~~~~~  285 (296)
T 3e5z_A          226 DAGGL-IWASA---GDGVHVL-TPDGDELGRVLTPQTTSNLCFGGPEGRTLYMTV--STEFWSIETN  285 (296)
T ss_dssp             BTTSC-EEEEE---TTEEEEE-CTTSCEEEEEECSSCCCEEEEESTTSCEEEEEE--TTEEEEEECS
T ss_pred             CCCCC-EEEEc---CCeEEEE-CCCCCEEEEEECCCCceeEEEECCCCCEEEEEc--CCeEEEEEcc
Confidence            43333 33332   2233444 345643322      3445442   24799998  9999998763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.61  E-value=3.3e-13  Score=116.27  Aligned_cols=221  Identities=13%  Similarity=0.170  Sum_probs=141.7

Q ss_pred             cccccceeceEEEeCCCCc-EEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           42 IEHICGRPLGIRFDKKTGD-LYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        42 ~~~~~~~p~gl~~d~~~g~-l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      +......+.|.++++ +|+ ||+++.. ++|++++++ +..+.+..     +...+++++++++|+ +|+++..      
T Consensus        40 l~~~~~~~egp~~~~-~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~-----~~~~~~gl~~d~dG~-l~v~~~~------  105 (305)
T 3dr2_A           40 LYDQATWSEGPAWWE-AQRTLVWSDLVGRRVLGWRED-GTVDVLLD-----ATAFTNGNAVDAQQR-LVHCEHG------  105 (305)
T ss_dssp             EECCCSSEEEEEEEG-GGTEEEEEETTTTEEEEEETT-SCEEEEEE-----SCSCEEEEEECTTSC-EEEEETT------
T ss_pred             EecCCcCccCCeEeC-CCCEEEEEECCCCEEEEEeCC-CCEEEEeC-----CCCccceeeECCCCC-EEEEECC------
Confidence            333445678999999 665 8888776 469999985 44544432     224689999999999 9999843      


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEEEEecC-----CcccceEEEecCCCeEEEEec-----------------CCceEE
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQG-----LAFANGVALSRDRTFILIAET-----------------SNCRIL  177 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~-----------------~~~~i~  177 (310)
                                 .++|++++++ ++.+.+...     ...|+.+++++||+ +|+++.                 ..+.|+
T Consensus       106 -----------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~  172 (305)
T 3dr2_A          106 -----------RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVY  172 (305)
T ss_dssp             -----------TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred             -----------CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEE
Confidence                       5679999987 666655421     24588999999998 999753                 136899


Q ss_pred             EEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecC-----CccceeeeeeccccccEEe----eccchhhhhcc
Q 046018          178 RFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAK-----KGLFGKLILLNSWLGKTLL----KLPLSFRQLHS  247 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~-----~~~~~~~i~~~~~~g~~~~----~~~~~~~~~~~  247 (310)
                      +++++++..   ..+.. ...|++++++++|+ ||+++...     +.     +..++..+..+.    ....+...+.+
T Consensus       173 ~~d~~~g~~---~~~~~-~~~p~gl~~spdg~~lyv~~~~~~~~~~~~-----i~~~~~~~~~l~~~~~~~~~~~~~pdg  243 (305)
T 3dr2_A          173 RLPPDGSPL---QRMAD-LDHPNGLAFSPDEQTLYVSQTPEQGHGSVE-----ITAFAWRDGALHDRRHFASVPDGLPDG  243 (305)
T ss_dssp             EECSSSCCC---EEEEE-ESSEEEEEECTTSSEEEEEECCC---CCCE-----EEEEEEETTEEEEEEEEECCSSSCCCS
T ss_pred             EEcCCCCcE---EEEec-CCCCcceEEcCCCCEEEEEecCCcCCCCCE-----EEEEEecCCCccCCeEEEECCCCCCCe
Confidence            998864322   22222 24689999999996 89988752     32     444443211110    01111112223


Q ss_pred             c--------ccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEE--eCCEEEEecCCCCeEEEecc
Q 046018          248 L--------LVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEE--KDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       248 ~--------~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~--~~g~l~vgs~~~~~i~~~~~  307 (310)
                      +        +++. . ..+.+++++|+.+..+..+.+     ++.++.  ..+.||+++  ..+|+++++
T Consensus       244 i~~d~~G~lwv~~-~-~gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~--~~~l~~~~~  304 (305)
T 3dr2_A          244 FCVDRGGWLWSSS-G-TGVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITG--GPCLWMLPL  304 (305)
T ss_dssp             EEECTTSCEEECC-S-SEEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEE--TTEEEEEEC
T ss_pred             EEECCCCCEEEec-C-CcEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEc--CCeEEEEEC
Confidence            2        3333 1 246788999998888775542     333433  456899998  468888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.61  E-value=4.4e-13  Score=112.41  Aligned_cols=164  Identities=13%  Similarity=0.108  Sum_probs=113.1

Q ss_pred             eeceEEEeCCCCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .|+||++++ ++.||+++..   +.|.++|+.++++.......   ...++.+++++  |++||+++..           
T Consensus        22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~---~~~fgeGi~~~--g~~lyv~t~~-----------   84 (266)
T 2iwa_A           22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMD---DSYFGEGLTLL--NEKLYQVVWL-----------   84 (266)
T ss_dssp             CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECC---TTCCEEEEEEE--TTEEEEEETT-----------
T ss_pred             CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecC---CCcceEEEEEe--CCEEEEEEec-----------
Confidence            578999998 6899999853   45999999999865443321   12244566766  4459999854           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--C-CCCCe
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--P-GFPDN  201 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~-~~p~~  201 (310)
                            .+.++.+|+++.+...-.+-. .|.|+.+++|+++||+++ +++.|+.+|+++.+....-.+...  + ..|+.
T Consensus        85 ------~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           85 ------KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             ------CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             ------CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence                  788999999887655433222 578888999999999997 689999999875322111111111  1 24677


Q ss_pred             eEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          202 VRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      +.+. +|.||++.+..+.+    ..++..+++.+..++++
T Consensus       157 le~~-dg~lyvn~~~~~~V----~vID~~tg~V~~~I~~~  191 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQTDCI----ARISAKDGTLLGWILLP  191 (266)
T ss_dssp             EEEE-TTEEEEEETTSSEE----EEEETTTCCEEEEEECH
T ss_pred             EEEE-CCEEEEecCCCCeE----EEEECCCCcEEEEEECC
Confidence            8777 78999998776654    45566677777776654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.60  E-value=8.1e-13  Score=114.43  Aligned_cols=234  Identities=10%  Similarity=0.097  Sum_probs=139.9

Q ss_pred             ceeceEEEeCCCCc-EEEEECC-CceEEEeCCCCeE-EEEEeecCCccccCCcc-eEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAY-LGFQVVGPEGGLA-TQLVTEAAGQPLRFTND-LDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~-~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~-i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..| ++++++ +|+ ||++... ..|+.+|.+++++ ......     ...|.. ++++|+|+++| +....        
T Consensus        41 ~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~-~~~~~--------  104 (331)
T 3u4y_A           41 DFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-----GQSSMADVDITPDDQFAV-TVTGL--------  104 (331)
T ss_dssp             CEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-----CSSCCCCEEECTTSSEEE-ECCCS--------
T ss_pred             Ccc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEeccc-----CCCCccceEECCCCCEEE-EecCC--------
Confidence            455 999999 665 8998885 4599999988875 322221     235667 99999999666 43220        


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCce-EEEEEccCCC-CCcc-eeeeeCCCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCR-ILRFWLHGPN-SGKQ-DVFAELPGFP  199 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~-i~~~~~~~~~-~~~~-~~~~~~~~~p  199 (310)
                            ...+.|..||.++++..........|++++++||+++||+++...+. |.+|+.+... .... .........|
T Consensus       105 ------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  178 (331)
T 3u4y_A          105 ------NHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRP  178 (331)
T ss_dssp             ------SSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSE
T ss_pred             ------CCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCc
Confidence                  01128999999888776655556678999999999989999887777 9999887421 1111 1111223468


Q ss_pred             CeeEECCCCC-EEEEEecCCccceeeeeec-cccccE---EeeccchhhhhcccccCCCCc---------eEEEEECCC-
Q 046018          200 DNVRSNSNGE-FWVALHAKKGLFGKLILLN-SWLGKT---LLKLPLSFRQLHSLLVGGKPH---------ATAIKLSEK-  264 (310)
Q Consensus       200 ~~i~~d~~G~-l~va~~~~~~~~~~~i~~~-~~~g~~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~d~~-  264 (310)
                      .+++++++|+ +|++....+.     +..+ ...++.   +..++.. ..+..+.+...+.         ..+..+|.. 
T Consensus       179 ~~~~~spdg~~l~v~~~~~~~-----v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          179 FNITFTPDGNFAFVANLIGNS-----IGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             EEEEECTTSSEEEEEETTTTE-----EEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             cceEECCCCCEEEEEeCCCCe-----EEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence            8999999997 8888876655     3333 345555   5444432 2223333332222         223334433 


Q ss_pred             CCE--EEEEEcC---CCCeecceeEEEE--eCCEEEEecCCCCeEEEeccc
Q 046018          265 GEV--LEVLEDC---EGKTLSFISEVEE--KDGQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       265 g~~--~~~~~~~---~g~~~~~~~~~~~--~~g~l~vgs~~~~~i~~~~~~  308 (310)
                      +++  +..+...   ++........+..  .+..||+++...+.|.++++-
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          253 GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            222  1111110   0111111112232  345789998888889988763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=3.6e-13  Score=117.00  Aligned_cols=233  Identities=9%  Similarity=0.104  Sum_probs=145.5

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..|.++++++ +|+||+++.. .+|+++|+++++++.+...    ....+.+|+++++|+ +|+++....          
T Consensus        45 ~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~-l~v~~~~~~----------  108 (333)
T 2dg1_A           45 LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGR-LFVCYLGDF----------  108 (333)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSC-EEEEECTTS----------
T ss_pred             ccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCc-EEEEeCCCC----------
Confidence            4678999998 8999998765 4699999998887655422    124688999999999 999984310          


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec---CCcccceEEEecCCCeEEEEecC------CceEEEEEccCCCCCcceeeeeCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ---GLAFANGVALSRDRTFILIAETS------NCRILRFWLHGPNSGKQDVFAELP  196 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~---~~~~~~gi~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~  196 (310)
                         ...+.|++||+++++.+.+..   ....+++++++|+++ +|+++..      ...|++++++++.   ...+....
T Consensus       109 ---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~  181 (333)
T 2dg1_A          109 ---KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNI  181 (333)
T ss_dssp             ---SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEE
T ss_pred             ---CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCE---EEEeecCC
Confidence               012579999998887664332   234588999999997 8888654      4689999876432   22222212


Q ss_pred             CCCCeeEECCCCC-EEEEEecCCccceeeeeeccc--cccEEee----c--cch-hhhhcccccCCC--------CceEE
Q 046018          197 GFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSW--LGKTLLK----L--PLS-FRQLHSLLVGGK--------PHATA  258 (310)
Q Consensus       197 ~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~--~g~~~~~----~--~~~-~~~~~~~~~~~~--------~~~~~  258 (310)
                      ..|.+++++++|+ ||+++...+.     +..++.  .++.+..    .  ..+ ...+.++++...        ....+
T Consensus       182 ~~~~~i~~~~dg~~l~v~~~~~~~-----i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v  256 (333)
T 2dg1_A          182 SVANGIALSTDEKVLWVTETTANR-----LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRV  256 (333)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTE-----EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CcccceEECCCCCEEEEEeCCCCe-----EEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            3578999999996 8998765554     444433  3332211    0  000 012333333222        22345


Q ss_pred             EEECCCCCEEEEEEcCCC--CeecceeEEEEe-C-CEEEEecCCC-----CeEEEecc
Q 046018          259 IKLSEKGEVLEVLEDCEG--KTLSFISEVEEK-D-GQLWMGSVLM-----PFIGIYNR  307 (310)
Q Consensus       259 ~~~d~~g~~~~~~~~~~g--~~~~~~~~~~~~-~-g~l~vgs~~~-----~~i~~~~~  307 (310)
                      .+++++++.+..+..+..  ..+..++.++.. + ++||+++...     ..|+.++.
T Consensus       257 ~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          257 LVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             EEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             EEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            667888877777654321  011134555443 3 5899998752     36777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.58  E-value=5.2e-12  Score=110.06  Aligned_cols=190  Identities=12%  Similarity=0.126  Sum_probs=126.6

Q ss_pred             eccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCC-ceEEEeCCCCeEEEEEeecCCc-----cccCCcceE
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYL-GFQVVGPEGGLATQLVTEAAGQ-----PLRFTNDLD   99 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~-----~~~~~~~i~   99 (310)
                      ..+..+|..+.+..........|.++++++ +|+ +|++.... .|..+|.++++...........     ....|.+++
T Consensus        69 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (353)
T 3vgz_A           69 GVVYRLDPVTLEVTQAIHNDLKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV  147 (353)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred             ccEEEEcCCCCeEEEEEecCCCcceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence            346667765533222233345688999999 554 99998864 4999999888764433321110     011368899


Q ss_pred             EeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEE
Q 046018          100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILR  178 (310)
Q Consensus       100 ~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~  178 (310)
                      ++|+|+++|+++..                ..+.|+.||+++++...... ....|.+++++||++.||+++. ++.|++
T Consensus       148 ~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~  210 (353)
T 3vgz_A          148 ADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELIT  210 (353)
T ss_dssp             EETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEE
T ss_pred             ECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEE
Confidence            99999988988732                26779999999887766554 4455899999999999998854 789999


Q ss_pred             EEccCCCCCcceeeee----CCCCCCeeEECCCCC-EEEEEecCCccceeeeeec-cccccEEeeccch
Q 046018          179 FWLHGPNSGKQDVFAE----LPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLN-SWLGKTLLKLPLS  241 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~----~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~~  241 (310)
                      ||...++.  ...+..    ....+.+++++++|+ +|++....+.     +..+ ...++.+..++.+
T Consensus       211 ~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-----v~~~d~~~~~~~~~~~~~  272 (353)
T 3vgz_A          211 IDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-----VLVVDTRNGNILAKVAAP  272 (353)
T ss_dssp             EETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-----EEEEETTTCCEEEEEECS
T ss_pred             EECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-----EEEEECCCCcEEEEEEcC
Confidence            99874321  111111    123456799999996 7887766554     3443 4567776666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.55  E-value=2.1e-12  Score=112.84  Aligned_cols=152  Identities=14%  Similarity=0.155  Sum_probs=104.1

Q ss_pred             ceeceEEEeCCCCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ..|.++++++ +|+||++...   ..|..++.+++..+.+....  .....|..++++|+|++||++...          
T Consensus        40 ~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~----------  106 (347)
T 3hfq_A           40 QNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV--APGTPPAYVAVDEARQLVYSANYH----------  106 (347)
T ss_dssp             SCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE--EESCCCSEEEEETTTTEEEEEETT----------
T ss_pred             CCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeee--cCCCCCEEEEECCCCCEEEEEeCC----------
Confidence            6788999999 8889988763   35888888877765543321  123468999999999988888743          


Q ss_pred             hhhcCCCCceEEEEeCC-CCeEEEEe---cC---------CcccceEEEecCCCeEEEEecCCceEEEEEcc-CCCCCcc
Q 046018          124 SILSGDKTGRLLKYEKT-TKEVTILL---QG---------LAFANGVALSRDRTFILIAETSNCRILRFWLH-GPNSGKQ  189 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~-~~~~~~~~---~~---------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~-~~~~~~~  189 (310)
                             .+.+..|+.+ ++..+.+.   ..         ...+++++++||++ +|+++...+.|.+|+.+ ++.....
T Consensus       107 -------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          107 -------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             -------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             -------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEe
Confidence                   5667777763 34444322   11         12366899999999 99999888999999987 2222111


Q ss_pred             eeeee-CCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          190 DVFAE-LPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       190 ~~~~~-~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ..+.. ....|..++++++|+ ||++....+.
T Consensus       179 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~  210 (347)
T 3hfq_A          179 SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ  210 (347)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             eeEEcCCCCCCceEEECCCCCEEEEEeCCCCE
Confidence            11111 223678899999998 7777766554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=8e-13  Score=113.60  Aligned_cols=154  Identities=16%  Similarity=0.177  Sum_probs=107.9

Q ss_pred             CccccccceeceEEEeCCCCcEEEE-------E-CCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC-CCEEEEE
Q 046018           40 PDIEHICGRPLGIRFDKKTGDLYIA-------D-AYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH-KGVIYFT  110 (310)
Q Consensus        40 ~~~~~~~~~p~gl~~d~~~g~l~v~-------~-~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-g~~l~v~  110 (310)
                      ..+......|.++++++ +|+||++       + ..++|+++|+.+++++.+...........|.+++++++ |+ +|++
T Consensus        11 ~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~   88 (314)
T 1pjx_A           11 TKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVA   88 (314)
T ss_dssp             EEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEE
T ss_pred             hhhhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEE
Confidence            33444456789999998 8999999       3 34569999988887765532100112246889999999 87 9999


Q ss_pred             eCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE-ecC-----CcccceEEEecCCCeEEEEecCC-----------
Q 046018          111 DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL-LQG-----LAFANGVALSRDRTFILIAETSN-----------  173 (310)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~-----~~~~~gi~~~~d~~~lyv~~~~~-----------  173 (310)
                      +.                  ...|++||++ ++.+.+ ...     ...|++++++++|+ +|+++...           
T Consensus        89 ~~------------------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           89 DM------------------RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             ET------------------TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTT
T ss_pred             EC------------------CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccc
Confidence            83                  2369999998 777655 321     23588999999987 89987654           


Q ss_pred             ----ceEEEEEccCCCCCcceeeeeCCCCCCeeEEC----CCC-CEEEEEecCCc
Q 046018          174 ----CRILRFWLHGPNSGKQDVFAELPGFPDNVRSN----SNG-EFWVALHAKKG  219 (310)
Q Consensus       174 ----~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d----~~G-~l~va~~~~~~  219 (310)
                          +.|+++++++    ....+......|.+++++    ++| .||+++...+.
T Consensus       149 ~~~~~~l~~~~~~g----~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~  199 (314)
T 1pjx_A          149 QEKFGSIYCFTTDG----QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK  199 (314)
T ss_dssp             SSSCEEEEEECTTS----CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred             cCCCCeEEEECCCC----CEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence                6899998652    222222222357899999    999 68999876554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.54  E-value=1.8e-11  Score=106.65  Aligned_cols=227  Identities=11%  Similarity=0.072  Sum_probs=140.6

Q ss_pred             cceeceEEEeCCCCcEEEEECC------C-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY------L-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~------~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      ...|.+++++++.+.||++...      . .|+.+|.++++.......     ...|.+++++++|+++|+++..     
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~v~~~~-----  109 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-----DLKPFGATINNTTQTLWFGNTV-----  109 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-----SSCCCSEEEETTTTEEEEEETT-----
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-----CCCcceEEECCCCCEEEEEecC-----
Confidence            3578899999955579998865      2 399999998876544332     1258899999999989998843     


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEecC--Cc--------ccceEEEecCCCeEEEEec-CCceEEEEEccCCCCC
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQG--LA--------FANGVALSRDRTFILIAET-SNCRILRFWLHGPNSG  187 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~--------~~~gi~~~~d~~~lyv~~~-~~~~i~~~~~~~~~~~  187 (310)
                                  .+.|..||+++++.......  ..        .|.+++++||++.+|+++. ..+.|++||+.+.+. 
T Consensus       110 ------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~-  176 (353)
T 3vgz_A          110 ------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL-  176 (353)
T ss_dssp             ------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE-
T ss_pred             ------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce-
Confidence                        57899999988876443221  11        2788999999999999874 467899999864311 


Q ss_pred             cceeeeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeeccccccEEeeccchh----hhhcccccCCCCce------
Q 046018          188 KQDVFAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWLGKTLLKLPLSF----RQLHSLLVGGKPHA------  256 (310)
Q Consensus       188 ~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~------  256 (310)
                       ...+......|.+++++++|+ ||++.. .+.+    ...+...++....++.+.    ..+..+.+...+..      
T Consensus       177 -~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i----~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  250 (353)
T 3vgz_A          177 -KTAIQNTGKMSTGLALDSEGKRLYTTNA-DGEL----ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS  250 (353)
T ss_dssp             -EEEECCCCTTCCCCEEETTTTEEEEECT-TSEE----EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred             -EEEecCCCCccceEEECCCCCEEEEEcC-CCeE----EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence             111211233588999999997 555544 4432    333445666665554421    11222222222221      


Q ss_pred             ---EEEEECC-CCCEEEEEEcCCCCeecceeEEEE-e-CCEEEEecCCCCeEEEecc
Q 046018          257 ---TAIKLSE-KGEVLEVLEDCEGKTLSFISEVEE-K-DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       257 ---~~~~~d~-~g~~~~~~~~~~g~~~~~~~~~~~-~-~g~l~vgs~~~~~i~~~~~  307 (310)
                         .+..+|. +++.+..+..+.      ...+.. . +..+|+++..++.|.+++.
T Consensus       251 ~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          251 KAAEVLVVDTRNGNILAKVAAPE------SLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             SSSEEEEEETTTCCEEEEEECSS------CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCEEEEEECCCCcEEEEEEcCC------CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence               2223332 233333333211      112322 2 4469999988899999885

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.53  E-value=2.8e-12  Score=111.02  Aligned_cols=235  Identities=10%  Similarity=0.025  Sum_probs=141.9

Q ss_pred             eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEE
Q 046018           21 WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI  100 (310)
Q Consensus        21 W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~  100 (310)
                      |+....  +.++|..+................++.  ++.||++...++|+++|++ ++.......    .......+++
T Consensus        74 ~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~----~~~~~~~~~~  144 (330)
T 3hxj_A           74 YFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT----KKAIYATPIV  144 (330)
T ss_dssp             CCSSCE--EEEECCCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC----SSCCCSCCEE
T ss_pred             EEecCc--EEEECCCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC----CCceeeeeEE
Confidence            775444  777776442211111111112234444  6899999877789999998 543222121    1123567788


Q ss_pred             eCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEE
Q 046018          101 DEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRF  179 (310)
Q Consensus       101 d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~  179 (310)
                      +++|+ +|+++.                  .+.|+++|++ ++... ..........+++++++. +|++.   +.|+++
T Consensus       145 ~~~g~-l~vgt~------------------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---~~l~~~  200 (330)
T 3hxj_A          145 SEDGT-IYVGSN------------------DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---DKVYAI  200 (330)
T ss_dssp             CTTSC-EEEECT------------------TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---SSEEEE
T ss_pred             cCCCE-EEEEcC------------------CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---CEEEEE
Confidence            99999 999872                  4789999998 55432 322233456677887877 88875   899999


Q ss_pred             EccCCCCCcceeeee--CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcc--------cc
Q 046018          180 WLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHS--------LL  249 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~--------~~  249 (310)
                      +.++.     ..+..  .......+++|++|+||+++..++      +..++++++.+..++.+......        ++
T Consensus       201 d~~g~-----~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~g------l~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  269 (330)
T 3hxj_A          201 NPDGT-----EKWNFYAGYWTVTRPAISEDGTIYVTSLDGH------LYAINPDGTEKWRFKTGKRIESSPVIGNTDTIY  269 (330)
T ss_dssp             CTTSC-----EEEEECCSSCCCSCCEECTTSCEEEEETTTE------EEEECTTSCEEEEEECSSCCCSCCEECTTSCEE
T ss_pred             CCCCc-----EEEEEccCCcceeceEECCCCeEEEEcCCCe------EEEECCCCCEeEEeeCCCCccccceEcCCCeEE
Confidence            84332     11211  123457889999999999997655      66667777776655433222222        22


Q ss_pred             cCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEE-eCCEEEEecCCCCeEEEe
Q 046018          250 VGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEE-KDGQLWMGSVLMPFIGIY  305 (310)
Q Consensus       250 ~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~  305 (310)
                      ++.. ...+.++|++|+.+..+..+.    ..+..++. .+|+||+|+. +..|...
T Consensus       270 v~t~-~ggl~~~d~~g~~~~~~~~~~----~~~~~~~~d~~g~l~~gt~-~G~~~~~  320 (330)
T 3hxj_A          270 FGSY-DGHLYAINPDGTEKWNFETGS----WIIATPVIDENGTIYFGTR-NGKFYAL  320 (330)
T ss_dssp             EECT-TCEEEEECTTSCEEEEEECSS----CCCSCCEECTTCCEEEECT-TSCEEEE
T ss_pred             EecC-CCCEEEECCCCcEEEEEEcCC----ccccceEEcCCCEEEEEcC-CCeEEEE
Confidence            2222 235778898888777665432    12334444 6899999996 4444443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.50  E-value=1.6e-10  Score=102.26  Aligned_cols=249  Identities=10%  Similarity=0.110  Sum_probs=153.8

Q ss_pred             ccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCC-ceEEEeCCCCeEE
Q 046018            4 TGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYL-GFQVVGPEGGLAT   81 (310)
Q Consensus         4 ~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~~   81 (310)
                      ++..++.|..|+.+...-+.                  .......+..+++++ +|+ ||++.... .|..+|..+++..
T Consensus         7 s~~~d~~v~v~d~~~~~~~~------------------~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~   67 (391)
T 1l0q_A            7 ANSESDNISVIDVTSNKVTA------------------TIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVI   67 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEE------------------EEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EcCCCCEEEEEECCCCeEEE------------------EeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEE
Confidence            45567888899886652110                  001123477899999 664 67776554 4888999888765


Q ss_pred             EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec
Q 046018           82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR  161 (310)
Q Consensus        82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~  161 (310)
                      .....  .   ..+.+++++|+|++||++...                 .+.|..||.++++..........+.+++++|
T Consensus        68 ~~~~~--~---~~v~~~~~spdg~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~  125 (391)
T 1l0q_A           68 ATVPA--G---SSPQGVAVSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSP  125 (391)
T ss_dssp             EEEEC--S---SSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             EEEEC--C---CCccceEECCCCCEEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCcceEEECC
Confidence            44332  1   267899999999988888643                 6789999999887766555566789999999


Q ss_pred             CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018          162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      |++.||++....+.|++||+..++   ..........|..++++++|+ ||++....+.     +..++ ..++....++
T Consensus       126 dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~-----v~~~d~~~~~~~~~~~  197 (391)
T 1l0q_A          126 DGKKLYVTNNGDKTVSVINTVTKA---VINTVSVGRSPKGIAVTPDGTKVYVANFDSMS-----ISVIDTVTNSVIDTVK  197 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTE---EEEEEECCSSEEEEEECTTSSEEEEEETTTTE-----EEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCc---EEEEEecCCCcceEEECCCCCEEEEEeCCCCE-----EEEEECCCCeEEEEEe
Confidence            999898888888999999986431   111122234578899999996 5666655554     33333 4455544443


Q ss_pred             chhhhhcccccCCCCceEE-----------EEECCC-CCEEEEEEcCCCCeecceeEEEEe--CCEEEEecCCCCeEEEe
Q 046018          240 LSFRQLHSLLVGGKPHATA-----------IKLSEK-GEVLEVLEDCEGKTLSFISEVEEK--DGQLWMGSVLMPFIGIY  305 (310)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~-----------~~~d~~-g~~~~~~~~~~g~~~~~~~~~~~~--~g~l~vgs~~~~~i~~~  305 (310)
                      .. ..+.++.+...+..++           ..+|.. ++.+..+...     ..+..+...  +..||+++..++.|.++
T Consensus       198 ~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~s~~~d~~v~v~  271 (391)
T 1l0q_A          198 VE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-----PDPAGIAVTPDGKKVYVALSFXNTVSVI  271 (391)
T ss_dssp             CS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC-----CCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence            22 1222333332222222           222221 2222222211     123344433  34788887778889888


Q ss_pred             cc
Q 046018          306 NR  307 (310)
Q Consensus       306 ~~  307 (310)
                      +.
T Consensus       272 d~  273 (391)
T 1l0q_A          272 DT  273 (391)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.50  E-value=3.9e-12  Score=111.96  Aligned_cols=168  Identities=14%  Similarity=0.155  Sum_probs=106.4

Q ss_pred             cceeceEEEeCC---CCcEEEEECC--------CceEEEeCCCC--e---EEEEEeecCCccccCCcceEEeCCCCEEEE
Q 046018           46 CGRPLGIRFDKK---TGDLYIADAY--------LGFQVVGPEGG--L---ATQLVTEAAGQPLRFTNDLDIDEHKGVIYF  109 (310)
Q Consensus        46 ~~~p~gl~~d~~---~g~l~v~~~~--------~gi~~~d~~~~--~---~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v  109 (310)
                      ...|.||+++++   ++.|||+...        ..|.+++.++.  .   .+.+.........+.+++|+++|||. ||+
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyv  150 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYI  150 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEE
Confidence            367999999994   5899999863        45999987654  2   22233322233456789999999999 999


Q ss_pred             EeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC--------eEEEEecCCcccceEEEecCCCeEEEEecCCce---EEE
Q 046018          110 TDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK--------EVTILLQGLAFANGVALSRDRTFILIAETSNCR---ILR  178 (310)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~---i~~  178 (310)
                      +.....- . .  ...-.....|+|+++++++.        ..+++..++..|+||+++|+...||+++...+.   |.+
T Consensus       151 t~G~~~~-~-~--~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~  226 (354)
T 3a9g_A          151 TTGDAAD-P-R--LAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNI  226 (354)
T ss_dssp             ECCCTTC-G-G--GGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEE
T ss_pred             EECCCCC-C-c--cccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEE
Confidence            9742100 0 0  00001123578999999753        245666778889999999954459999987654   555


Q ss_pred             EEccCCCCC------------cceeeeeC---CCCCCeeEE-------CCCCCEEEEEecCCc
Q 046018          179 FWLHGPNSG------------KQDVFAEL---PGFPDNVRS-------NSNGEFWVALHAKKG  219 (310)
Q Consensus       179 ~~~~~~~~~------------~~~~~~~~---~~~p~~i~~-------d~~G~l~va~~~~~~  219 (310)
                      +.. +...+            ........   ...|.++++       +.+|++|+++..+..
T Consensus       227 i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~  288 (354)
T 3a9g_A          227 ILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSM  288 (354)
T ss_dssp             ECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTE
T ss_pred             ecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCE
Confidence            432 22111            00111111   235788888       467889998876654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.50  E-value=9.3e-12  Score=109.49  Aligned_cols=162  Identities=15%  Similarity=0.226  Sum_probs=107.5

Q ss_pred             cccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec-CCccccCCcceEEeCC---CCEEEEEeCCCchh
Q 046018           42 IEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA-AGQPLRFTNDLDIDEH---KGVIYFTDSSTSFQ  117 (310)
Q Consensus        42 ~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~---g~~l~v~~~~~~~~  117 (310)
                      +......|.+|++++ +|+|||++..+.|.+++  +++.+.+.... .......|++|+++|+   +++||+++....  
T Consensus        26 va~~l~~P~~ia~~p-dG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~--  100 (352)
T 2ism_A           26 VVGGLEVPWALAFLP-DGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE--  100 (352)
T ss_dssp             EECCCSCEEEEEECT-TSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT--
T ss_pred             EECCCCCceEEEEcC-CCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC--
Confidence            344457899999999 89999999886799998  35554444321 1112457999999998   444999984210  


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCCCe---EEEEec-------CCcccceEEEecCCCeEEEEec-------------CCc
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTTKE---VTILLQ-------GLAFANGVALSRDRTFILIAET-------------SNC  174 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~~~---~~~~~~-------~~~~~~gi~~~~d~~~lyv~~~-------------~~~  174 (310)
                                .....+|++++.++++   .+.+..       ....+++|+++|||. ||++..             ..+
T Consensus       101 ----------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g  169 (352)
T 2ism_A          101 ----------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGG  169 (352)
T ss_dssp             ----------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSS
T ss_pred             ----------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCce
Confidence                      0012679999876542   222221       123578999999996 999853             236


Q ss_pred             eEEEEEccCCCC----------CcceeeeeCCCCCCeeEECC-CCCEEEEEecCCc
Q 046018          175 RILRFWLHGPNS----------GKQDVFAELPGFPDNVRSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       175 ~i~~~~~~~~~~----------~~~~~~~~~~~~p~~i~~d~-~G~l~va~~~~~~  219 (310)
                      +|+++++++.-.          ...+.++.--..|.++++|+ +|+||+++.....
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~  225 (352)
T 2ism_A          170 KILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSG  225 (352)
T ss_dssp             EEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC--
T ss_pred             EEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCC
Confidence            899999886210          12233433224589999999 8999999987653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.49  E-value=1.4e-12  Score=126.10  Aligned_cols=184  Identities=17%  Similarity=0.175  Sum_probs=119.2

Q ss_pred             ccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCcccc-------ccceeceEEEeCCCCcEEEEECCCceEEEeCC
Q 046018            6 VADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEH-------ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPE   76 (310)
Q Consensus         6 ~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~   76 (310)
                      +....|.++.++.++  |+++ ..||.++++.+.++.....       .......|..|+ +|+||+++...||+++|++
T Consensus       370 l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigT~~~Gl~~~~~~  447 (758)
T 3ott_A          370 LSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQLWISTCLGGIFVVDKH  447 (758)
T ss_dssp             CSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEEEEEESSSCEEEEEHH
T ss_pred             CCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCEEEEECCCceEEEccc
Confidence            344568889888877  9977 5699999988755544321       112345788888 8999999988899999875


Q ss_pred             C------CeEE--EEEeecCCccccCCcceEEeCCCCEEEE--EeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE
Q 046018           77 G------GLAT--QLVTEAAGQPLRFTNDLDIDEHKGVIYF--TDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI  146 (310)
Q Consensus        77 ~------~~~~--~~~~~~~~~~~~~~~~i~~d~~g~~l~v--~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  146 (310)
                      +      ..+.  .......+.+...+.+|+.|++|+ ||+  ++                   .+.|+++|+++++++.
T Consensus       448 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t-------------------~~Gl~~~d~~~~~~~~  507 (758)
T 3ott_A          448 KLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYN-------------------NKGIDKINPRTREVTK  507 (758)
T ss_dssp             HHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETT-------------------CSSEEEEETTTTEEEE
T ss_pred             cccccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccC-------------------CCCcEEEeCCCCceEE
Confidence            3      2221  011111223334577899999999 999  44                   3469999999888876


Q ss_pred             EecC-C---cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC-CCCCeeEECCCCCEEEEEec
Q 046018          147 LLQG-L---AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP-GFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       147 ~~~~-~---~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~G~l~va~~~  216 (310)
                      +... .   ..++.+..+.+|. ||++. . ++|.+|++......... ...++ ....++..+ +|+||+++..
T Consensus       508 ~~~~~~~~~~~~~~i~~d~~g~-lWigt-~-~Gl~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~-~g~lWi~t~~  577 (758)
T 3ott_A          508 LFADELTGEKSPNYLLCDEDGL-LWVGF-H-GGVMRINPKDESQQSIS-FGSFSNNEILSMTCV-KNSIWVSTTN  577 (758)
T ss_dssp             ECTTTSCGGGCEEEEEECTTSC-EEEEE-T-TEEEEECC--CCCCBCC-CCC---CCEEEEEEE-TTEEEEEESS
T ss_pred             ecCCCcCCCcccceEEECCCCC-EEEEe-c-CceEEEecCCCceEEec-ccCCCccceEEEEEC-CCCEEEECCC
Confidence            5422 1   2356788887777 88874 3 58999998754322111 11122 223456665 8999999954

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.48  E-value=2.2e-12  Score=124.84  Aligned_cols=261  Identities=14%  Similarity=0.118  Sum_probs=148.4

Q ss_pred             CcEEEEEeCCCCC--eEEEEEeccccccccCCC---CCccc-------cccceeceEEEeCCCCcEEEEECCCceEEEeC
Q 046018            8 DGRILKWQGDELG--WTEFAVTTSQRKECVRPF---APDIE-------HICGRPLGIRFDKKTGDLYIADAYLGFQVVGP   75 (310)
Q Consensus         8 ~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~   75 (310)
                      ...|..+..+.++  |+++ ..|+.+++..+..   +....       .....+..|..|+ +|+||+++. .||.++++
T Consensus       323 ~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt~-~GL~~~~~  399 (758)
T 3ott_A          323 GNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLWIATD-GSINRYDY  399 (758)
T ss_dssp             CCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEEEEET-TEEEEEET
T ss_pred             CceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEEEEeC-CcHhhcCc
Confidence            4568888888777  9986 4688888765421   11111       1113456788888 899999985 58999999


Q ss_pred             CCCeEEEEEeecCC--ccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC------CeEE--
Q 046018           76 EGGLATQLVTEAAG--QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT------KEVT--  145 (310)
Q Consensus        76 ~~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~------~~~~--  145 (310)
                      ++++++++......  .+...+.+|+.|++|+ ||+++.                  .+.|+++|+++      +.+.  
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~------------------~~Gl~~~~~~~~~~~~~~~~~~~  460 (758)
T 3ott_A          400 ATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTC------------------LGGIFVVDKHKLMQSTSGQYIAE  460 (758)
T ss_dssp             TTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEES------------------SSCEEEEEHHHHHHCCSSEEECS
T ss_pred             CCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEEC------------------CCceEEEccccccccCCcceecc
Confidence            99888766432111  1233567888999998 999983                  35688998652      2221  


Q ss_pred             -EEe--cCCc--ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CC--CCCCeeEECCCCCEEEEEec
Q 046018          146 -ILL--QGLA--FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LP--GFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       146 -~~~--~~~~--~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~--~~p~~i~~d~~G~l~va~~~  216 (310)
                       ...  ..+.  ....|..+++|+ ||++....++|++|+++.+.   ...+..  ..  ..+..++.|++|+||+++..
T Consensus       461 ~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~  536 (758)
T 3ott_A          461 QNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTRE---VTKLFADELTGEKSPNYLLCDEDGLLWVGFHG  536 (758)
T ss_dssp             EEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTTE---EEEECTTTSCGGGCEEEEEECTTSCEEEEETT
T ss_pred             cccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCCc---eEEecCCCcCCCcccceEEECCCCCEEEEecC
Confidence             111  1121  245677787777 88822234789999986432   222211  11  23567899999999999853


Q ss_pred             CCccceeeeeeccccccEEeecc---chhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCC------eecceeEEEE
Q 046018          217 KKGLFGKLILLNSWLGKTLLKLP---LSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGK------TLSFISEVEE  287 (310)
Q Consensus       217 ~~~~~~~~i~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~------~~~~~~~~~~  287 (310)
                       +      +.++++....+..+.   ++...+.++..  ....+.+.-+ +|  +..+......      +-..++.+..
T Consensus       537 -G------l~~~~~~~~~~~~~~~~gl~~~~i~~i~~--~~g~lWi~t~-~G--l~~~~~~~~~~~~~~~~~~~~~~~~~  604 (758)
T 3ott_A          537 -G------VMRINPKDESQQSISFGSFSNNEILSMTC--VKNSIWVSTT-NG--LWIIDRKTMDARQQNMTNKRFTSLLF  604 (758)
T ss_dssp             -E------EEEECC--CCCCBCCCCC---CCEEEEEE--ETTEEEEEES-SC--EEEEETTTCCEEEC--CCCCCSEEEE
T ss_pred             -c------eEEEecCCCceEEecccCCCccceEEEEE--CCCCEEEECC-CC--eEEEcCCCceeEEecCCCCceeeeEE
Confidence             4      566655443333331   11111112211  1112222221 22  2223221211      1112333332


Q ss_pred             --eCCEEEEecCCCCeEEEeccc
Q 046018          288 --KDGQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       288 --~~g~l~vgs~~~~~i~~~~~~  308 (310)
                        .+|+||+|+  .+++..|++-
T Consensus       605 ~~~~G~l~fG~--~~Gl~~f~p~  625 (758)
T 3ott_A          605 DPKEDCVYLGG--ADGFGISHSN  625 (758)
T ss_dssp             ETTTTEEEEEC--BSEEEEEEC-
T ss_pred             ECCCCcEEEec--CCceEEEChh
Confidence              379999998  9999998863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=4.7e-12  Score=110.90  Aligned_cols=232  Identities=11%  Similarity=0.136  Sum_probs=138.8

Q ss_pred             ceeceEEEeCCCCcEEEEECC--C---ceEEEeCCCCeEEEEEee--cCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY--L---GFQVVGPEGGLATQLVTE--AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~--~---gi~~~d~~~~~~~~~~~~--~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      ..|.++++++ +|++|++...  .   .|..++  ++++..+...  .....+..|.+|++|++|+ ||+++...     
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~-----   87 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGN-----   87 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHH-----
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCC-----
Confidence            5899999999 8999999653  2   488888  4555443211  1112356899999999998 99998430     


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEE-EEec--C----CcccceEEEecCCCeEEEEec---CCceEEEEEccCCCCCcc
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVT-ILLQ--G----LAFANGVALSRDRTFILIAET---SNCRILRFWLHGPNSGKQ  189 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~--~----~~~~~gi~~~~d~~~lyv~~~---~~~~i~~~~~~~~~~~~~  189 (310)
                             ......+|++||+++++.. .+.-  .    ...+++++++++++.+|++++   ..+.|.+|+++++.....
T Consensus        88 -------~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           88 -------QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             -------HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             -------CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE
Confidence                   0011467999999888743 3321  1    135799999988778999998   788999999874321000


Q ss_pred             ------------e------eee--e-------CCCCCCeeEECCCCC-EEEEEecCCccceeeeeecccc---------c
Q 046018          190 ------------D------VFA--E-------LPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWL---------G  232 (310)
Q Consensus       190 ------------~------~~~--~-------~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~---------g  232 (310)
                                  .      .+.  .       ....|++|+++++|+ ||++...+..     +..++..         +
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~-----l~~~~~~~~~~~~~~~~  235 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTS-----MYRIKSADLSNLQLTDA  235 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSE-----EEEEEHHHHTCTTCCHH
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCe-----EEEEEHHHhcCCCCChh
Confidence                        0      000  0       012368899999994 8888876654     3333210         0


Q ss_pred             cEEeeccc--hhhhhcccccCCC--------CceEEEEECC-CCCEEEEEEcCCCCeecceeEEEE-eCCEEEEecCCCC
Q 046018          233 KTLLKLPL--SFRQLHSLLVGGK--------PHATAIKLSE-KGEVLEVLEDCEGKTLSFISEVEE-KDGQLWMGSVLMP  300 (310)
Q Consensus       233 ~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~d~-~g~~~~~~~~~~g~~~~~~~~~~~-~~g~l~vgs~~~~  300 (310)
                      +....+..  ....+.++++...        ....+.++++ +|++......+   ....++.++. .+++||+.+...+
T Consensus       236 ~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~---~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          236 ELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE---KLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             HHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG---GGSCEEEEEECTTSCEEEEECCGG
T ss_pred             hhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC---ceecCCeeEECCCCcEEEEeCccc
Confidence            00000000  0112333333322        2235667777 67654444322   2345677765 4689999986444


Q ss_pred             eE
Q 046018          301 FI  302 (310)
Q Consensus       301 ~i  302 (310)
                      ++
T Consensus       313 ~~  314 (343)
T 2qe8_A          313 HS  314 (343)
T ss_dssp             GS
T ss_pred             cc
Confidence            43

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.47  E-value=7.8e-12  Score=107.73  Aligned_cols=214  Identities=12%  Similarity=0.081  Sum_probs=135.2

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..|.++++++ +|+||+++.. +.|+++|++++.. .+...  .   ..|++|+++++|+ +|+++...           
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~-~~~~~--~---~~p~gia~~~dG~-l~vad~~~-----------   92 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQ-IHATV--E---GKVSGLAFTSNGD-LVATGWNA-----------   92 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEE-EEEEC--S---SEEEEEEECTTSC-EEEEEECT-----------
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceE-EEEeC--C---CCceeEEEcCCCc-EEEEeccC-----------
Confidence            5789999999 8999999976 4599999987543 33222  1   2689999999999 99998431           


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec--CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce---------eeee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ--GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD---------VFAE  194 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~--~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~---------~~~~  194 (310)
                          ....|++++..+++.+.+..  ....++|++..+++ .+|+++..+++|++++++++.. ...         ....
T Consensus        93 ----~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           93 ----DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSES  166 (306)
T ss_dssp             ----TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTTC
T ss_pred             ----CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcE-eEEEECCccccccccC
Confidence                12358999988888776542  34568899987655 5899998889999999764210 000         0000


Q ss_pred             CCCCCCeeEECCCC-CEEEEEecCCccceeeeeecccc--ccE-----EeeccchhhhhcccccC--------CCCceEE
Q 046018          195 LPGFPDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWL--GKT-----LLKLPLSFRQLHSLLVG--------GKPHATA  258 (310)
Q Consensus       195 ~~~~p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~--g~~-----~~~~~~~~~~~~~~~~~--------~~~~~~~  258 (310)
                      ....|++|  +++| .||+++...+.     |..++..  ++.     +...    ..|..+++.        ......+
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~-----I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKML-----LLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTE-----EEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCE-----EEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeE
Confidence            11357888  5565 69999987765     4444432  221     1111    123333333        2223456


Q ss_pred             EEECCCCCEEEEEEcCCCCeecceeEEEEe-----CCEEEEecCC
Q 046018          259 IKLSEKGEVLEVLEDCEGKTLSFISEVEEK-----DGQLWMGSVL  298 (310)
Q Consensus       259 ~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~-----~g~l~vgs~~  298 (310)
                      .+++++|+.......+.+  ...++.++..     .++||+++..
T Consensus       236 ~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          236 VRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEECCCCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCC
Confidence            677877766443222211  2456777653     3799999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.46  E-value=1.4e-10  Score=100.39  Aligned_cols=152  Identities=13%  Similarity=0.109  Sum_probs=102.3

Q ss_pred             ceeceEEEeCCCCc-EEEEECC-CceEEEeCC--CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAY-LGFQVVGPE--GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~-~gi~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..|.++++++ +|+ ||++... ..|..++.+  +++.+.+......   ..|..++++|+|+++|++...         
T Consensus        38 ~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~---------  104 (343)
T 1ri6_A           38 GQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDHQGQFVFVGSYN---------  104 (343)
T ss_dssp             SCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECTTSSEEEEEETT---------
T ss_pred             CCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccC---CCCcEEEEcCCCCEEEEEecC---------
Confidence            4678899999 555 8888876 446665544  6666544332211   268999999999988888743         


Q ss_pred             hhhhcCCCCceEEEEeCCCCe---EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC-CCCCcce--eeee-C
Q 046018          123 SSILSGDKTGRLLKYEKTTKE---VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG-PNSGKQD--VFAE-L  195 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~---~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~--~~~~-~  195 (310)
                              .+.|..||.+++.   ..........+.+++++||++.+|+++...+.|.+|+.+. +......  .... .
T Consensus       105 --------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  176 (343)
T 1ri6_A          105 --------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE  176 (343)
T ss_dssp             --------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred             --------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC
Confidence                    5678888873332   2223344556899999999999999987889999999874 3221111  1111 2


Q ss_pred             CCCCCeeEECCCCC-EEEEEecCCc
Q 046018          196 PGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       196 ~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ...|..++++++|+ +|++....+.
T Consensus       177 ~~~~~~~~~~pdg~~l~~~~~~~~~  201 (343)
T 1ri6_A          177 GAGPRHMVFHPNEQYAYCVNELNSS  201 (343)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCcceEEECCCCCEEEEEeCCCCE
Confidence            24678899999997 7777655443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=3.3e-11  Score=104.75  Aligned_cols=212  Identities=10%  Similarity=0.030  Sum_probs=136.3

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+.+.+++++++.||+++.. .+|+++|+++++.+.+. .  .   ..+.+++++++|+ +|++.              
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~--~---~~v~~i~~~~dg~-l~v~~--------------  107 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-L--P---FMGSALAKISDSK-QLIAS--------------  107 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-C--S---SCEEEEEEEETTE-EEEEE--------------
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-C--C---CcceEEEEeCCCe-EEEEE--------------
Confidence            456789999966889999876 46999999988765442 1  1   2578899999998 99987              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC-----CcccceEEEecCCCeEEEEecC------CceEEEEEccCCCCCcceeeee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG-----LAFANGVALSRDRTFILIAETS------NCRILRFWLHGPNSGKQDVFAE  194 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~  194 (310)
                           ...|+++|+++++.+.+...     ...++.++++++|+ +|+++..      .+.|++++ ++    ....+..
T Consensus       108 -----~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~-~g----~~~~~~~  176 (326)
T 2ghs_A          108 -----DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA-KG----KVTKLFA  176 (326)
T ss_dssp             -----TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE-TT----EEEEEEE
T ss_pred             -----CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe-CC----cEEEeeC
Confidence                 33599999988887765432     13478999999998 8887653      46899998 42    2222222


Q ss_pred             CCCCCCeeEECCCCC-EEEEEecCCccceeeeeeccc---cc-c-----EEeeccchhhhhcccccCCCC--------ce
Q 046018          195 LPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSW---LG-K-----TLLKLPLSFRQLHSLLVGGKP--------HA  256 (310)
Q Consensus       195 ~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~---~g-~-----~~~~~~~~~~~~~~~~~~~~~--------~~  256 (310)
                      ....|.+++++++|+ ||+++...+.     |..++.   .| .     .+..++.....+.++.+...+        ..
T Consensus       177 ~~~~~~~i~~s~dg~~lyv~~~~~~~-----I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~  251 (326)
T 2ghs_A          177 DISIPNSICFSPDGTTGYFVDTKVNR-----LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG  251 (326)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCE-----EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred             CCcccCCeEEcCCCCEEEEEECCCCE-----EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC
Confidence            123578999999995 8888765554     343332   34 2     122221111223333333222        23


Q ss_pred             EEEEECCCCCEEEEEEcCCCCeecceeEEEEe---CCEEEEecCCC
Q 046018          257 TAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK---DGQLWMGSVLM  299 (310)
Q Consensus       257 ~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~l~vgs~~~  299 (310)
                      .+.+++++++.+..+..+.    ..++.++..   .+.||+++...
T Consensus       252 ~v~~~d~~g~~~~~i~~~~----~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          252 AVDRYDTDGNHIARYEVPG----KQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEEEECTTCCEEEEEECSC----SBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEEEECCCCCEEEEEECCC----CCcEEEEEecCCCCEEEEEecCC
Confidence            5667788887777665432    235666543   36899998755

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.44  E-value=3.1e-11  Score=106.15  Aligned_cols=160  Identities=15%  Similarity=0.153  Sum_probs=106.8

Q ss_pred             cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec-CCccccCCcceEEeCC---CCEEEEEeCC-Cchhh
Q 046018           44 HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA-AGQPLRFTNDLDIDEH---KGVIYFTDSS-TSFQR  118 (310)
Q Consensus        44 ~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~---g~~l~v~~~~-~~~~~  118 (310)
                      .....|.+|++++ +|+|||++..+.|.+++.+ ++ +.+.... .......|.+|+++|+   +.+||++... ..   
T Consensus        26 ~~l~~P~~ia~~p-dG~l~V~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~---   99 (354)
T 3a9g_A           26 SDLEVPWSIAPLG-GGRYLVTERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE---   99 (354)
T ss_dssp             CSCSCEEEEEEEE-TTEEEEEETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG---
T ss_pred             CCCCCCeEEEEcC-CCeEEEEeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC---
Confidence            3457899999999 8999999988779999865 44 4443321 1112346899999997   3349999741 00   


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCC-----eEEEEec-----CCcccceEEEecCCCeEEEEec-------------CCce
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTK-----EVTILLQ-----GLAFANGVALSRDRTFILIAET-------------SNCR  175 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~-----~~~~~~~-----~~~~~~gi~~~~d~~~lyv~~~-------------~~~~  175 (310)
                              ......+|++++.+++     ..+++..     ....+++|+++|||+ ||++..             ..++
T Consensus       100 --------~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~  170 (354)
T 3a9g_A          100 --------GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGK  170 (354)
T ss_dssp             --------GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSE
T ss_pred             --------CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeE
Confidence                    0001267999987654     1232221     233578999999997 999852             2368


Q ss_pred             EEEEEccCCCCC-----cceeeeeCCCCCCeeEECC-CCCEEEEEecCC
Q 046018          176 ILRFWLHGPNSG-----KQDVFAELPGFPDNVRSNS-NGEFWVALHAKK  218 (310)
Q Consensus       176 i~~~~~~~~~~~-----~~~~~~~~~~~p~~i~~d~-~G~l~va~~~~~  218 (310)
                      |+++++++....     ..++++.--..|.++++|+ +|+||++++...
T Consensus       171 I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~  219 (354)
T 3a9g_A          171 ILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPV  219 (354)
T ss_dssp             EEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSS
T ss_pred             EEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCC
Confidence            999998863110     1234443235689999999 899999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.44  E-value=2e-10  Score=100.15  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=101.7

Q ss_pred             cceeceEEEeCCCCc-EEEEECCCc-eEEEeCC-CCeEEEEEeecC-Cc------cccCCcceEEeCCCCEEEEEeCCCc
Q 046018           46 CGRPLGIRFDKKTGD-LYIADAYLG-FQVVGPE-GGLATQLVTEAA-GQ------PLRFTNDLDIDEHKGVIYFTDSSTS  115 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~-l~v~~~~~g-i~~~d~~-~~~~~~~~~~~~-~~------~~~~~~~i~~d~~g~~l~v~~~~~~  115 (310)
                      ...|.++++++ +|+ ||++....+ |..++.+ ++..+.+..... +.      ....++.++++|+|+ +|+++..  
T Consensus        85 ~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~--  160 (347)
T 3hfq_A           85 GTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG--  160 (347)
T ss_dssp             SCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT--
T ss_pred             CCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC--
Confidence            45788999999 665 888875544 6666653 344443322211 10      122467899999999 9999854  


Q ss_pred             hhhhhhhhhhhcCCCCceEEEEeCC-CCeEEEEe----cCCcccceEEEecCCCeEEEEecCCceEEEEEccC--CCCCc
Q 046018          116 FQRRQFMSSILSGDKTGRLLKYEKT-TKEVTILL----QGLAFANGVALSRDRTFILIAETSNCRILRFWLHG--PNSGK  188 (310)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~--~~~~~  188 (310)
                                     .+.|..|+.+ +++.....    .....|.+++++|||++||+++...+.|.+|+.+.  +....
T Consensus       161 ---------------~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          161 ---------------SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             ---------------TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             ---------------CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence                           5678888876 56554322    23346889999999999999988889999998874  21111


Q ss_pred             ceeeeeCC------CCCCeeEECCCCC-EEEEEecCCc
Q 046018          189 QDVFAELP------GFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       189 ~~~~~~~~------~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ...+...+      ..|.+++++++|+ ||++....+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~  263 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT  263 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence            11222222      2367799999997 7787765554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.43  E-value=2.9e-11  Score=106.20  Aligned_cols=153  Identities=13%  Similarity=0.117  Sum_probs=101.3

Q ss_pred             ceeceEEEeCCCCc-EEEEECCC-ceEEE--eCCCC----e-EEEE---EeecCCccccCCcceEEeCCCCEEEEEeCCC
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYL-GFQVV--GPEGG----L-ATQL---VTEAAGQPLRFTNDLDIDEHKGVIYFTDSST  114 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~-gi~~~--d~~~~----~-~~~~---~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~  114 (310)
                      .+++++++++ +|+ ||+++... .|..+  +..++    + +...   ... .......|++++++|+|+++|+++.. 
T Consensus       155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~-  231 (361)
T 3scy_A          155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF-KVAPGSGPRHLIFNSDGKFAYLINEI-  231 (361)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETT-
T ss_pred             CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce-ecCCCCCCeEEEEcCCCCEEEEEcCC-
Confidence            4568899999 665 89988764 35554  54443    2 3211   011 11223468899999999988888743 


Q ss_pred             chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec------CCcccceEEEecCCCeEEEEecC-CceEEEEEccCCCCC
Q 046018          115 SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ------GLAFANGVALSRDRTFILIAETS-NCRILRFWLHGPNSG  187 (310)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~------~~~~~~gi~~~~d~~~lyv~~~~-~~~i~~~~~~~~~~~  187 (310)
                                      .+.|..|+.++++.+.+..      ....|.+++++|||++||+++.. .+.|.+|+.+.. .+
T Consensus       232 ----------------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g  294 (361)
T 3scy_A          232 ----------------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-NG  294 (361)
T ss_dssp             ----------------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-TC
T ss_pred             ----------------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CC
Confidence                            6678888887776644321      12346799999999999999887 789999988621 11


Q ss_pred             cceeeee--CCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          188 KQDVFAE--LPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       188 ~~~~~~~--~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      .......  ....|.+++++++|+ ||++....+.
T Consensus       295 ~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~  329 (361)
T 3scy_A          295 TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNV  329 (361)
T ss_dssp             CEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTE
T ss_pred             cEEEeeEecCCCCCceEEECCCCCEEEEEECCCCC
Confidence            2222222  234689999999997 7777655443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.42  E-value=5.5e-11  Score=102.80  Aligned_cols=167  Identities=10%  Similarity=0.063  Sum_probs=107.0

Q ss_pred             ccccccccCCCC-Cccccccceece-EEEeCCCCc-EEEEECCC----ceEEEeCCCCeEEEEEeecCCccccCCcceEE
Q 046018           28 TSQRKECVRPFA-PDIEHICGRPLG-IRFDKKTGD-LYIADAYL----GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI  100 (310)
Q Consensus        28 ~~~~~~~~~~~~-~~~~~~~~~p~g-l~~d~~~g~-l~v~~~~~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~  100 (310)
                      .+..+|..+... .........|.. +++++ +|+ || +....    .|..+|.++++.......     ...|+++++
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~  135 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPI-----PYDAVGIAI  135 (331)
T ss_dssp             EEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEEC-----CTTEEEEEE
T ss_pred             eEEEEECCCCceeEEecccCCCCccceEECC-CCCEEE-EecCCCCcccEEEEECCCCCeEEEEEC-----CCCccceEE
Confidence            445555544332 222223355677 99999 665 56 44443    589999998876543322     235789999


Q ss_pred             eCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce-EEEEeCCC-CeE----EEEecCCcccceEEEecCCCeEEEEecCCc
Q 046018          101 DEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR-LLKYEKTT-KEV----TILLQGLAFANGVALSRDRTFILIAETSNC  174 (310)
Q Consensus       101 d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~-~~~----~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~  174 (310)
                      +|+|+++|+++..                 .+. +..|+.+. +..    .........|.+++++||+++||++....+
T Consensus       136 spdg~~l~~~~~~-----------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  198 (331)
T 3u4y_A          136 SPNGNGLILIDRS-----------------SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN  198 (331)
T ss_dssp             CTTSSCEEEEEET-----------------TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCCEEEEEecC-----------------CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC
Confidence            9999878888743                 344 55554332 222    122234456899999999999999988889


Q ss_pred             eEEEEEccCCCCCc-ceeeeeCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          175 RILRFWLHGPNSGK-QDVFAELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       175 ~i~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      .|.+|++..+.... ...+ .....|.+++++++|+ ||++....+.
T Consensus       199 ~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~  244 (331)
T 3u4y_A          199 SIGILETQNPENITLLNAV-GTNNLPGTIVVSRDGSTVYVLTESTVD  244 (331)
T ss_dssp             EEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSEEEEECSSEEE
T ss_pred             eEEEEECCCCcccceeeec-cCCCCCceEEECCCCCEEEEEEcCCCE
Confidence            99999987542210 1112 2345689999999998 7777654443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.42  E-value=3.5e-10  Score=101.44  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=113.6

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ ++++|++.... .|..+|.++++.......    ....+..++++++++++|++...            
T Consensus       170 ~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~------------  232 (433)
T 3bws_A          170 GFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSNWI------------  232 (433)
T ss_dssp             CEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEETT------------
T ss_pred             CceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEecC------------
Confidence            4566899988 88999888764 488899988765433221    12367899999999977777643            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec-------CCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET-------SNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                           ++.|..||..+++..........+.+++++|+++.|+++..       .++.|++||+.+++.   ......+..
T Consensus       233 -----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---~~~~~~~~~  304 (433)
T 3bws_A          233 -----SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL---IDTIGPPGN  304 (433)
T ss_dssp             -----TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE---EEEEEEEEC
T ss_pred             -----CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE---EeeccCCCC
Confidence                 67899999988877655555556899999999998888764       357899999874321   111112235


Q ss_pred             CCeeEECCCCC-EEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018          199 PDNVRSNSNGE-FWVALHAKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       199 p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      +..++++++|+ +|++....+.     +..++ ..++.+..++
T Consensus       305 ~~~~~~~~~g~~l~~~~~~~~~-----v~v~d~~~~~~~~~~~  342 (433)
T 3bws_A          305 KRHIVSGNTENKIYVSDMCCSK-----IEVYDLKEKKVQKSIP  342 (433)
T ss_dssp             EEEEEECSSTTEEEEEETTTTE-----EEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCE-----EEEEECCCCcEEEEec
Confidence            78899999995 7777666654     44443 3455555543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.41  E-value=1.4e-10  Score=98.35  Aligned_cols=219  Identities=14%  Similarity=0.111  Sum_probs=139.5

Q ss_pred             CCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE
Q 046018           58 TGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK  136 (310)
Q Consensus        58 ~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~  136 (310)
                      .++++++.... .|+.+|+++++..--...  . ....+++++++|+|+ ++++.                   .+.|+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--~-~~~~~~~~~~~pdG~-ilvs~-------------------~~~V~~   60 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL--E-KGWECNSVAATKAGE-ILFSY-------------------SKGAKM   60 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEEC--C-TTCCCCEEEECTTSC-EEEEC-------------------BSEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCC--C-ccCCCcCeEECCCCC-EEEeC-------------------CCCEEE
Confidence            46777776664 589999988875322221  1 113588999999999 88854                   567999


Q ss_pred             EeCCCCeEEEEecCC--cccceEEEecCCCeEEEEecC-CceEEEEEccCCCCCcceeeeeCC---CCCCeeEECCCCCE
Q 046018          137 YEKTTKEVTILLQGL--AFANGVALSRDRTFILIAETS-NCRILRFWLHGPNSGKQDVFAELP---GFPDNVRSNSNGEF  210 (310)
Q Consensus       137 ~d~~~~~~~~~~~~~--~~~~gi~~~~d~~~lyv~~~~-~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~l  210 (310)
                      +|++ ++...-....  ...+...+.+||+ +++++.. +++|+.++++++.......-....   ..|..+.++++|++
T Consensus        61 ~d~~-G~~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~  138 (276)
T 3no2_A           61 ITRD-GRELWNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNY  138 (276)
T ss_dssp             ECTT-SCEEEEEECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCE
T ss_pred             ECCC-CCEEEEEcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCE
Confidence            9994 5544322221  2456778899998 6666666 789999988764221111111111   24677889999999


Q ss_pred             EEEEecCCccceeeeeeccccccEEeeccchhhhhcc--------cccCCCCceEEEEECCC-CCEEEEEEcC--CCCee
Q 046018          211 WVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHS--------LLVGGKPHATAIKLSEK-GEVLEVLEDC--EGKTL  279 (310)
Q Consensus       211 ~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~~-g~~~~~~~~~--~g~~~  279 (310)
                      +++....+.     +..+++.|+.+..+..+. .+..        ..+.......++.+|++ |+++..+...  .+..+
T Consensus       139 lv~~~~~~~-----v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l  212 (276)
T 3no2_A          139 LVPLFATSE-----VREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQL  212 (276)
T ss_dssp             EEEETTTTE-----EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCC
T ss_pred             EEEecCCCE-----EEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccc
Confidence            999887665     566666799887765431 1111        12222333467889988 9998888642  23334


Q ss_pred             cceeEEE-EeCCEEEEecCC----------CCeEEEecc
Q 046018          280 SFISEVE-EKDGQLWMGSVL----------MPFIGIYNR  307 (310)
Q Consensus       280 ~~~~~~~-~~~g~l~vgs~~----------~~~i~~~~~  307 (310)
                      ..++.+. ..+|.+|++++.          ..++..++.
T Consensus       213 ~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~  251 (276)
T 3no2_A          213 FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS  251 (276)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred             cccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence            5566554 458899999862          446777653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.41  E-value=5.5e-12  Score=107.93  Aligned_cols=188  Identities=9%  Similarity=-0.032  Sum_probs=118.1

Q ss_pred             EEEEeCCCCC-eEEEE-EeccccccccCCCCCcccc--------ccceeceEEE---eCCCCcEEEEEC-----------
Q 046018           11 ILKWQGDELG-WTEFA-VTTSQRKECVRPFAPDIEH--------ICGRPLGIRF---DKKTGDLYIADA-----------   66 (310)
Q Consensus        11 i~~~~~~~~~-W~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~p~gl~~---d~~~g~l~v~~~-----------   66 (310)
                      -.+|+...+. |++.. ..++..+++.+.....+..        ...++.||.+   |+ +|+||++..           
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccccccc
Confidence            4567775554 77663 4666667765321111111        1136789999   78 699999533           


Q ss_pred             ---CCceEEEeCC---CCeEEEEEeec--CCc-------cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018           67 ---YLGFQVVGPE---GGLATQLVTEA--AGQ-------PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT  131 (310)
Q Consensus        67 ---~~gi~~~d~~---~~~~~~~~~~~--~~~-------~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (310)
                         ...|.++|++   +++....+...  ...       ....+++|++|++|+ +||+++.                 .
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~-----------------~  157 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFAL-----------------G  157 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEE-----------------S
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCC-----------------C
Confidence               1348999988   56543333321  110       223589999999999 9999853                 4


Q ss_pred             -ceEEEEeCCCCeEEEEec------CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee--ee--CCCCCC
Q 046018          132 -GRLLKYEKTTKEVTILLQ------GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF--AE--LPGFPD  200 (310)
Q Consensus       132 -g~v~~~d~~~~~~~~~~~------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~--~~--~~~~p~  200 (310)
                       +.|+++++++.....+..      ....++||++.||++.|+++++ .++|++||+..........-  ..  ....|+
T Consensus       158 ~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~d  236 (334)
T 2p9w_A          158 MPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTE  236 (334)
T ss_dssp             SCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEE
T ss_pred             CCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcc
Confidence             779999998654554321      1234789999999998999988 89999999873211001111  00  123578


Q ss_pred             ee-EECCCCCE-EEEEecCC
Q 046018          201 NV-RSNSNGEF-WVALHAKK  218 (310)
Q Consensus       201 ~i-~~d~~G~l-~va~~~~~  218 (310)
                      +| ....+|++ +|+...+.
T Consensus       237 gilp~~~~G~vllV~~~~~~  256 (334)
T 2p9w_A          237 KIVTVPVGNESVLVGARAPY  256 (334)
T ss_dssp             EEEEEEETTEEEEEEEETTE
T ss_pred             cccccccCCEEEEEEcCCCC
Confidence            85 66678876 66665443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=3.5e-11  Score=109.29  Aligned_cols=200  Identities=12%  Similarity=0.094  Sum_probs=128.8

Q ss_pred             EEEEEeCC-CCC-eEEEE-EeccccccccCCCCCcccc----ccceeceEEE-------eCCCCc-EEEEECCC------
Q 046018           10 RILKWQGD-ELG-WTEFA-VTTSQRKECVRPFAPDIEH----ICGRPLGIRF-------DKKTGD-LYIADAYL------   68 (310)
Q Consensus        10 ~i~~~~~~-~~~-W~~~~-~~~~~~~~~~~~~~~~~~~----~~~~p~gl~~-------d~~~g~-l~v~~~~~------   68 (310)
                      ....+++. .+. |+... ...+.++|.++.+...+..    ...+|.+|++       ++ +|+ ||+++...      
T Consensus       142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGGGE
T ss_pred             CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcccC
Confidence            34556653 222 54322 2456666665533222221    1247999999       98 665 99999874      


Q ss_pred             -ceEEEeCCC-CeEE-----EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC-
Q 046018           69 -GFQVVGPEG-GLAT-----QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT-  140 (310)
Q Consensus        69 -gi~~~d~~~-~~~~-----~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-  140 (310)
                       .|+.++.+. +.+.     ....     ....|++++++|++++||+++..                 .+.|+++|++ 
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~-----~~~~p~giavdp~~g~LYvtd~~-----------------~g~V~r~d~~~  278 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIA-----AYKQCNGATIHPINGELYFNSYE-----------------KGQVFRLDLVD  278 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEE-----EESCCCCEEECTTTCCEEEEETT-----------------TTEEEEECHHH
T ss_pred             ceEEEEecCCCCceeecccceeec-----cCCCceEEEEcCCCCeEEEEECC-----------------CCEEEEEeccc
Confidence             277886554 2321     1111     23479999999954449999964                 7789999987 


Q ss_pred             ------CCeE------------EEEe--cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC--CCcceeeeeC---
Q 046018          141 ------TKEV------------TILL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN--SGKQDVFAEL---  195 (310)
Q Consensus       141 ------~~~~------------~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~--~~~~~~~~~~---  195 (310)
                            ++..            +.+.  .....|.+|+++|+++.||++++.+++|++++.++..  ......++..   
T Consensus       279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~  358 (496)
T 3kya_A          279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ  358 (496)
T ss_dssp             HHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB
T ss_pred             ccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC
Confidence                  5543            1222  2234588999999999999999999999999887531  1111222211   


Q ss_pred             ------------CCCCC-eeEEC-------CCCCEEEEEecCCccceeeeeeccccccEEee
Q 046018          196 ------------PGFPD-NVRSN-------SNGEFWVALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       196 ------------~~~p~-~i~~d-------~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                                  -..|. ++++|       ++|+||||+..+++     |.++.++|.....
T Consensus       359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r-----Ir~i~~~G~v~Ti  415 (496)
T 3kya_A          359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC-----VRKVTPEGIVSTY  415 (496)
T ss_dssp             CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE-----EEEECTTCBEEEE
T ss_pred             CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE-----EEEEeCCCCEEEE
Confidence                        13577 78887       78999999998886     6667778865433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.39  E-value=1.6e-10  Score=100.31  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=109.6

Q ss_pred             ceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           50 LGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      .|+++.+ ++++|++.... .|.++|..+++........   ....+..++++|+|+++|++...               
T Consensus         3 ~g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~~~v~~~~---------------   63 (349)
T 1jmx_B            3 TGPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMP---DKFGPGTAMMAPDNRTAYVLNNH---------------   63 (349)
T ss_dssp             -CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECS---SCCSSCEEEECTTSSEEEEEETT---------------
T ss_pred             ccccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecC---CCCCCceeEECCCCCEEEEEeCC---------------
Confidence            4677777 78899887764 4999999988765433321   11258899999999878888743               


Q ss_pred             CCCceEEEEeCCCCeEEEEecC-------CcccceEEEecCCCeEEEEecC-----------CceEEEEEccCCCCCcce
Q 046018          129 DKTGRLLKYEKTTKEVTILLQG-------LAFANGVALSRDRTFILIAETS-----------NCRILRFWLHGPNSGKQD  190 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~-------~~~~~gi~~~~d~~~lyv~~~~-----------~~~i~~~~~~~~~~~~~~  190 (310)
                        .+.|+.||+++++.......       ...+.+++++||++.||++...           .+.|++||+.++......
T Consensus        64 --~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  141 (349)
T 1jmx_B           64 --YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  141 (349)
T ss_dssp             --TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             --CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence              67899999988876543322       2237899999999999998744           579999998753221111


Q ss_pred             eeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          191 VFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       191 ~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      .....+..+.+++++++|++|++.   ..+    ...+...++....++.
T Consensus       142 ~~~~~~~~~~~~~~s~dg~l~~~~---~~i----~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          142 RTFPMPRQVYLMRAADDGSLYVAG---PDI----YKMDVKTGKYTVALPL  184 (349)
T ss_dssp             EEEECCSSCCCEEECTTSCEEEES---SSE----EEECTTTCCEEEEECS
T ss_pred             eeccCCCcccceeECCCCcEEEcc---CcE----EEEeCCCCceeccccc
Confidence            122234457788899999988742   221    2334456666665543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.39  E-value=9.2e-12  Score=107.71  Aligned_cols=239  Identities=11%  Similarity=0.077  Sum_probs=140.0

Q ss_pred             eEEEEEeccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceE
Q 046018           21 WTEFAVTTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD   99 (310)
Q Consensus        21 W~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~   99 (310)
                      |+.....++.++|..+ ++... .........++.++ +|.||+++..  |+++|+++..+..+ .  ...  ......+
T Consensus        34 ~v~t~~~~l~~~d~~g-~~~~~~~~~~~~~~~~~~~~-~g~l~v~t~~--l~~~d~~g~~~~~~-~--~~~--~~~~~~~  104 (330)
T 3hxj_A           34 YLGSSNKNLYAINTDG-SVKWFFKSGEIIECRPSIGK-DGTIYFGSDK--VYAINPDGTEKWRF-D--TKK--AIVSDFT  104 (330)
T ss_dssp             ECSSTTTTTEEECTTS-CEEESSCGGGEEEECCEETT-TTEECCSSCE--EEEECCCGGGGGGS-C--C-------CCEE
T ss_pred             EEEcCCCEEEEECCCC-cEEEEEecCCCcccceEEec-CCcEEEecCc--EEEECCCCcEEEEE-E--CCC--CcccCce
Confidence            8866667788888333 21111 11112345788887 8999998665  99999854332111 1  011  1123344


Q ss_pred             EeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEE
Q 046018          100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILR  178 (310)
Q Consensus       100 ~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~  178 (310)
                      +. +++ +|+++.                  .+.|+++|++ ++... ..........+++++++. +|++ +..+.|++
T Consensus       105 ~~-~~~-l~v~t~------------------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vg-t~~~~l~~  161 (330)
T 3hxj_A          105 IF-EDI-LYVTSM------------------DGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVG-SNDNYLYA  161 (330)
T ss_dssp             EE-TTE-EEEECT------------------TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEE-CTTSEEEE
T ss_pred             EE-CCE-EEEEec------------------CCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEE-cCCCEEEE
Confidence            44 776 999872                  5679999998 55433 222223345677887777 8887 45689999


Q ss_pred             EEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCC-----
Q 046018          179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGK-----  253 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----  253 (310)
                      +++++. .  ...+.........+++|++|+||+++  ++      +..++++++.+.....+.....++.....     
T Consensus       162 ~d~~g~-~--~~~~~~~~~~~~~~~~d~~g~l~v~t--~~------l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v  230 (330)
T 3hxj_A          162 INPDGT-E--KWRFKTNDAITSAASIGKDGTIYFGS--DK------VYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYV  230 (330)
T ss_dssp             ECTTSC-E--EEEEECSSCCCSCCEECTTCCEEEES--SS------EEEECTTSCEEEEECCSSCCCSCCEECTTSCEEE
T ss_pred             ECCCCC-E--eEEEecCCCceeeeEEcCCCEEEEEe--CE------EEEECCCCcEEEEEccCCcceeceEECCCCeEEE
Confidence            987622 1  11111112234668899999999998  33      56666777776555433222222222211     


Q ss_pred             --CceEEEEECCCCCEEEEEEcCCCCeecceeEEE-EeCCEEEEecCCCCeEEEecc
Q 046018          254 --PHATAIKLSEKGEVLEVLEDCEGKTLSFISEVE-EKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       254 --~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~l~vgs~~~~~i~~~~~  307 (310)
                        ....+.+++++|+.+..+....+.    .+.++ ..+++||+++. ..+|+.++.
T Consensus       231 ~t~~~gl~~~~~~g~~~~~~~~~~~~----~~~~~~~~~g~l~v~t~-~ggl~~~d~  282 (330)
T 3hxj_A          231 TSLDGHLYAINPDGTEKWRFKTGKRI----ESSPVIGNTDTIYFGSY-DGHLYAINP  282 (330)
T ss_dssp             EETTTEEEEECTTSCEEEEEECSSCC----CSCCEECTTSCEEEECT-TCEEEEECT
T ss_pred             EcCCCeEEEECCCCCEeEEeeCCCCc----cccceEcCCCeEEEecC-CCCEEEECC
Confidence              123566778888887766543321    22233 34889999996 568998874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.37  E-value=3.1e-10  Score=100.41  Aligned_cols=184  Identities=13%  Similarity=0.109  Sum_probs=123.5

Q ss_pred             eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCC
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKG  105 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~  105 (310)
                      ..+..+|..+.+..........+.+++++++...||++... ..|..+|.++++.......     ...+.+++++++|+
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~  128 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGK  128 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSS
T ss_pred             CeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-----CCCcceEEECCCCC
Confidence            44555565442222222233477899999944458888766 4599999998876544332     12578999999999


Q ss_pred             EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC
Q 046018          106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN  185 (310)
Q Consensus       106 ~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~  185 (310)
                      ++|++...                 .+.|+.||..+++..........+..++++||++.||++...++.|++||+....
T Consensus       129 ~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          129 KLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             EEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEeCC-----------------CCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence            78787643                 6789999998887766555566789999999999898888888999999987431


Q ss_pred             CCcceeeeeCCCCCCeeEECCCCC-EEEEEe--cCCccceeeeeecc-ccccEEeeccc
Q 046018          186 SGKQDVFAELPGFPDNVRSNSNGE-FWVALH--AKKGLFGKLILLNS-WLGKTLLKLPL  240 (310)
Q Consensus       186 ~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~--~~~~~~~~~i~~~~-~~g~~~~~~~~  240 (310)
                         ..........+..++++++|+ ||++..  ..+.     +..++ ..++.+..++.
T Consensus       192 ---~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-----v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          192 ---VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-----VSMIDTGTNKITARIPV  242 (391)
T ss_dssp             ---EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-----EEEEETTTTEEEEEEEC
T ss_pred             ---EEEEEecCCCccceEECCCCCEEEEEecCcCCCc-----EEEEECCCCeEEEEEec
Confidence               111222334578899999996 666654  3333     44443 45555555443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.37  E-value=7.5e-10  Score=102.95  Aligned_cols=166  Identities=7%  Similarity=-0.016  Sum_probs=116.2

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeC--CCCeEEEEEeecCCccccCCcceEEeC----CCCEEEEEeCCCchhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGP--EGGLATQLVTEAAGQPLRFTNDLDIDE----HKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~--~~~~~~~~~~~~~~~~~~~~~~i~~d~----~g~~l~v~~~~~~~~~~~~  121 (310)
                      .+++++++++...||+++..+.|..+|.  .+++....+.  .   ...|.+++++|    +|+++|+++..        
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~---g~~p~~va~sp~~~~dg~~l~v~~~~--------  246 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--I---GIEARSVESSKFKGYEDRYTIAGAYW--------  246 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--C---CSEEEEEEECCSTTCTTTEEEEEEEE--------
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--c---CCCcceEEeCCCcCCCCCEEEEEEcc--------
Confidence            3789999995557899888766999999  6665432222  1   23689999999    99989988732        


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEecC------------CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcc
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQG------------LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQ  189 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~------------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~  189 (310)
                               .+.|..||.++++.......            ...+.+|+++++++.+|++...++.|+.+|.........
T Consensus       247 ---------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~  317 (543)
T 1nir_A          247 ---------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV  317 (543)
T ss_dssp             ---------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE
T ss_pred             ---------CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee
Confidence                     67799999888765443221            124568999999998999988999999999875322111


Q ss_pred             eeeeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          190 DVFAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       190 ~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      ..+ .....|.+++++++|+ ++++....+.+    ...+..+++++..++.
T Consensus       318 ~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v----~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          318 TSI-GAAPFLHDGGWDSSHRYFMTAANNSNKV----AVIDSKDRRLSALVDV  364 (543)
T ss_dssp             EEE-ECCSSCCCEEECTTSCEEEEEEGGGTEE----EEEETTTTEEEEEEEC
T ss_pred             EEe-ccCcCccCceECCCCCEEEEEecCCCeE----EEEECCCCeEEEeecc
Confidence            111 2345789999999998 66666655553    3445567777766543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.35  E-value=1e-10  Score=102.89  Aligned_cols=167  Identities=14%  Similarity=0.102  Sum_probs=105.8

Q ss_pred             cceeceEEEeCC---CCcEEEEECC------CceEEEeCCCCeE---EEEEeecC--CccccCCcceEEeCCCCEEEEEe
Q 046018           46 CGRPLGIRFDKK---TGDLYIADAY------LGFQVVGPEGGLA---TQLVTEAA--GQPLRFTNDLDIDEHKGVIYFTD  111 (310)
Q Consensus        46 ~~~p~gl~~d~~---~g~l~v~~~~------~gi~~~d~~~~~~---~~~~~~~~--~~~~~~~~~i~~d~~g~~l~v~~  111 (310)
                      ...|.||+++++   ++.|||+...      ..|.+++.+++.+   +.+.....  ....+.+++|+++|+|. ||+++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~  152 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT  152 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence            468999999994   4899999874      4599998775532   23333222  23456789999999998 99997


Q ss_pred             CCCchhhhhhhhhhhcCCCCceEEEEeCCC-------------CeEEEEecCCcccceEEEecCCCeEEEEecCCce---
Q 046018          112 SSTSFQRRQFMSSILSGDKTGRLLKYEKTT-------------KEVTILLQGLAFANGVALSRDRTFILIAETSNCR---  175 (310)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-------------~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~---  175 (310)
                      ....- . .  ...-.....|+|+++++++             ...+++..++..|+|++++|+...||+++...+.   
T Consensus       153 G~~~~-~-~--~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~  228 (352)
T 2ism_A          153 GEVYE-R-E--LAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQG  228 (352)
T ss_dssp             CCTTC-G-G--GGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC-----
T ss_pred             CCCCC-C-c--cccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCC
Confidence            42100 0 0  0000112357899999975             2344556677889999999954459999987766   


Q ss_pred             -----EEEEEccCCCCCc------------ceeeeeC--CCCCCeeEECCCCCEEEEEecCCc
Q 046018          176 -----ILRFWLHGPNSGK------------QDVFAEL--PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       176 -----i~~~~~~~~~~~~------------~~~~~~~--~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                           |.++.. +...+.            .......  ...|.++++ .+|++|+++..++.
T Consensus       229 ~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~  289 (352)
T 2ism_A          229 YGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQA  289 (352)
T ss_dssp             -CCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTE
T ss_pred             CCCeEEEEecc-CCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCCE
Confidence                 555533 221110            0111111  135789998 57899999887664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.35  E-value=1.9e-10  Score=101.32  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=93.9

Q ss_pred             ceeceEEEeCCCCc-EEE--EE-------------CCCceEEEeCC-CCeEEEEEeecCCccccCCcceEEeCCCCEEEE
Q 046018           47 GRPLGIRFDKKTGD-LYI--AD-------------AYLGFQVVGPE-GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYF  109 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v--~~-------------~~~gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v  109 (310)
                      +.|..+++++ +|+ ||+  ++             ..+.+..++.+ .+++..............+++++++|+|+++|+
T Consensus        83 g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           83 GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            3467789999 776 343  32             22224444443 243322222110011236889999999998888


Q ss_pred             EeCCCchhhhhhhhhhhcCCCCceEEEEeCC-CCeEEEEe--c--C-CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          110 TDSSTSFQRRQFMSSILSGDKTGRLLKYEKT-TKEVTILL--Q--G-LAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~--~--~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                      ++..                 .+.|+.|+.+ +++.+.+.  .  . ...|.+++++|||++||+++..++.|.+|+.+.
T Consensus       162 ~~~~-----------------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          162 ADLT-----------------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             EETT-----------------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EcCC-----------------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence            8743                 5678888887 67654322  1  1 456899999999999999987778998887653


Q ss_pred             --CCCCc-ceeeeeCC----C---------CCCeeE-ECCCCC-EEEEEecC
Q 046018          184 --PNSGK-QDVFAELP----G---------FPDNVR-SNSNGE-FWVALHAK  217 (310)
Q Consensus       184 --~~~~~-~~~~~~~~----~---------~p~~i~-~d~~G~-l~va~~~~  217 (310)
                        +.... ...+...+    +         .|.+++ +++||+ ||+++...
T Consensus       225 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence              21110 11122222    1         367899 999996 67776544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.35  E-value=8.5e-10  Score=96.00  Aligned_cols=159  Identities=13%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             cccccceeceEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeec--CCccccCCcceEEeCC----CCEEEEEeCCC
Q 046018           42 IEHICGRPLGIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEA--AGQPLRFTNDLDIDEH----KGVIYFTDSST  114 (310)
Q Consensus        42 ~~~~~~~p~gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~----g~~l~v~~~~~  114 (310)
                      +..-...|.+|++.+ +|+|||+.. .+.|++++.++++.+.+...+  .......+.+|+++|+    +. ||++.+..
T Consensus        27 va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~-lYv~yt~~  104 (347)
T 3das_A           27 VATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHM-VYAYFTSA  104 (347)
T ss_dssp             EECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCE-EEEEEECS
T ss_pred             eecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCE-EEEEEecC
Confidence            344457899999999 899999998 455999988777655443321  1122346889999984    65 99975321


Q ss_pred             chhhhhhhhhhhcCCCCceEEEEeCCCC--------eEEEEec-----CCcccceEEEecCCCeEEEEec----------
Q 046018          115 SFQRRQFMSSILSGDKTGRLLKYEKTTK--------EVTILLQ-----GLAFANGVALSRDRTFILIAET----------  171 (310)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~-----~~~~~~gi~~~~d~~~lyv~~~----------  171 (310)
                                     ..++|.++..+.+        ..+++..     .....+.|++.|||. ||++.-          
T Consensus       105 ---------------~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd  168 (347)
T 3das_A          105 ---------------SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQD  168 (347)
T ss_dssp             ---------------SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTC
T ss_pred             ---------------CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccC
Confidence                           2567888876541        1233222     123456799999997 999842          


Q ss_pred             ---CCceEEEEEccCCCCC-----cceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018          172 ---SNCRILRFWLHGPNSG-----KQDVFAELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       172 ---~~~~i~~~~~~~~~~~-----~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                         ..++|+++++++....     ..++++.--..|.++++|++|+||++++...
T Consensus       169 ~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~  223 (347)
T 3das_A          169 RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQD  223 (347)
T ss_dssp             TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSS
T ss_pred             CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCC
Confidence               3589999998864110     1234443224689999999999999998654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.34  E-value=8.6e-10  Score=91.46  Aligned_cols=160  Identities=11%  Similarity=0.093  Sum_probs=104.3

Q ss_pred             ceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           50 LGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .||.++  ++.||+++...   .|.++|++++++..-....   +..+..+|+++  +++||+.+..             
T Consensus        46 qGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---~~~FgeGit~~--g~~ly~ltw~-------------  105 (262)
T 3nol_A           46 EGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---KRYFGEGISDW--KDKIVGLTWK-------------  105 (262)
T ss_dssp             EEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---TTCCEEEEEEE--TTEEEEEESS-------------
T ss_pred             ceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---CccceeEEEEe--CCEEEEEEee-------------
Confidence            699997  46999998753   4999999999875443321   11233456665  4469999853             


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--C-CCCCeeE
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--P-GFPDNVR  203 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~-~~p~~i~  203 (310)
                          .+.++.||+++.+...-..-  .+.|..+++|++.||+++ ++++|+.+|+.+.+....-.+...  + ..++.+.
T Consensus       106 ----~~~v~v~D~~t~~~~~ti~~--~~eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe  178 (262)
T 3nol_A          106 ----NGLGFVWNIRNLRQVRSFNY--DGEGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELE  178 (262)
T ss_dssp             ----SSEEEEEETTTCCEEEEEEC--SSCCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred             ----CCEEEEEECccCcEEEEEEC--CCCceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence                78899999988765543222  236667778888899997 578999999875322111111111  1 2334566


Q ss_pred             ECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          204 SNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       204 ~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      +. +|.||++.+..+.+    ..+++.+|+.+..+.++
T Consensus       179 ~~-~G~lyan~w~~~~I----~vIDp~tG~V~~~Id~~  211 (262)
T 3nol_A          179 WV-DGEIFANVWQTNKI----VRIDPETGKVTGIIDLN  211 (262)
T ss_dssp             EE-TTEEEEEETTSSEE----EEECTTTCBEEEEEECT
T ss_pred             EE-CCEEEEEEccCCeE----EEEECCCCcEEEEEECC
Confidence            65 79999999877753    44455666666666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.32  E-value=2.7e-09  Score=93.54  Aligned_cols=152  Identities=14%  Similarity=0.134  Sum_probs=97.7

Q ss_pred             cceeceEEEeCCCCc-EEEEECC----Cce--EEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           46 CGRPLGIRFDKKTGD-LYIADAY----LGF--QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~-l~v~~~~----~gi--~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      ...|..+++++ +|+ ||++...    ..|  +.++.++++++.+.....  ....|..+++  +|++||+++..     
T Consensus        49 ~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~--~~~~p~~~~~--dg~~l~~~~~~-----  118 (361)
T 3scy_A           49 VANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT--MGADPCYLTT--NGKNIVTANYS-----  118 (361)
T ss_dssp             CSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC--SSSCEEEEEE--CSSEEEEEETT-----
T ss_pred             CCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc--CCCCcEEEEE--CCCEEEEEECC-----
Confidence            46788999999 554 8888874    234  666777677765543321  1235777887  77778888743     


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCC-CeEEE----EecC----------CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTT-KEVTI----LLQG----------LAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~-~~~~~----~~~~----------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                                  .+.+..|+.+. +....    ....          ...+++++++||+++||+++...+.|.+|+.+.
T Consensus       119 ------------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~  186 (361)
T 3scy_A          119 ------------GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINP  186 (361)
T ss_dssp             ------------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             ------------CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcC
Confidence                        56788887643 22211    1111          122478999999999999988889999998874


Q ss_pred             CC-------CCcc---eeee-eCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          184 PN-------SGKQ---DVFA-ELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       184 ~~-------~~~~---~~~~-~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ..       ....   .... .....|..++++++|+ +|++....+.
T Consensus       187 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          187 NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred             CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence            32       1000   1111 1234688999999997 7777655554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.31  E-value=2.8e-10  Score=94.38  Aligned_cols=159  Identities=12%  Similarity=0.126  Sum_probs=106.1

Q ss_pred             ceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           50 LGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      .||.++.  +.||+++...| |.++|++++++..-. .. .  ..+..+++++.  ++||+.+..               
T Consensus        58 qGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~--~~FgeGit~~g--~~Ly~ltw~---------------  114 (268)
T 3nok_A           58 QGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RL-G--NIFAEGLASDG--ERLYQLTWT---------------  114 (268)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-EC-T--TCCEEEEEECS--SCEEEEESS---------------
T ss_pred             ceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-C--CcceeEEEEeC--CEEEEEEcc---------------
Confidence            5999974  79999998854 889999998764333 21 1  11334566653  349999853               


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC---CCCCeeEEC
Q 046018          129 DKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP---GFPDNVRSN  205 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d  205 (310)
                        .+.++.||+++.+...-..-  .+.|..+++|+++||+++ ++++|+.+|+.+.+....-.+...+   ..++.+.+.
T Consensus       115 --~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          115 --EGLLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             --SCEEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             --CCEEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence              78899999998776543322  245666668889999997 6899999998753221111111111   133556665


Q ss_pred             CCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          206 SNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       206 ~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                       +|.||++.+....+    +.+++.+|+.+..+.+.
T Consensus       190 -dG~lyanvw~s~~I----~vIDp~TG~V~~~Idl~  220 (268)
T 3nok_A          190 -NGVIYANIWHSSDV----LEIDPATGTVVGVIDAS  220 (268)
T ss_dssp             -TTEEEEEETTCSEE----EEECTTTCBEEEEEECH
T ss_pred             -CCEEEEEECCCCeE----EEEeCCCCcEEEEEECC
Confidence             78999998877764    55566777777777664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.29  E-value=1.6e-09  Score=89.08  Aligned_cols=162  Identities=14%  Similarity=0.107  Sum_probs=105.8

Q ss_pred             eeceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      -..||.++.  +.||+++...   .|.++|++++++..-...+.   ..+..+++++  +++||+.+..           
T Consensus        22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~--~~~ly~ltw~-----------   83 (243)
T 3mbr_X           22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAW--RDRLIQLTWR-----------   83 (243)
T ss_dssp             CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEE--TTEEEEEESS-----------
T ss_pred             ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEe--CCEEEEEEee-----------
Confidence            345999986  7999998763   49999999998754433211   1133455655  4459999843           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--C-CCCCe
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--P-GFPDN  201 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~-~~p~~  201 (310)
                            .+.++.||+++.+...-.+-.  ..|..+++|+++||+++ ++++|+.+|+.+.+....-.+...  + ..++.
T Consensus        84 ------~~~v~v~D~~tl~~~~ti~~~--~~Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           84 ------NHEGFVYDLATLTPRARFRYP--GEGWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             ------SSEEEEEETTTTEEEEEEECS--SCCCEEEECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             ------CCEEEEEECCcCcEEEEEeCC--CCceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence                  788999999887665433222  35666778888899997 589999999875322111111111  1 22344


Q ss_pred             eEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          202 VRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      +... +|.||+..+....+    +.+++.+|+.+..+.+.
T Consensus       155 Le~~-~G~lyanvw~s~~I----~vIDp~tG~V~~~idl~  189 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRI----ARIDPASGKVVAWIDLQ  189 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEE----EEECTTTCBEEEEEECG
T ss_pred             eEEe-CCEEEEEECCCCeE----EEEECCCCCEEEEEECC
Confidence            5554 78999988877754    45566677777666553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.28  E-value=6.4e-09  Score=88.15  Aligned_cols=185  Identities=11%  Similarity=0.077  Sum_probs=121.6

Q ss_pred             cccccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE
Q 046018            3 YTGVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA   80 (310)
Q Consensus         3 ~~~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~   80 (310)
                      +++..++.|..|+.+...  |.- ...                 ....++.+++++ +|+++++ ...+|+.+|+++..+
T Consensus         9 v~~~~~~~v~~~d~~tG~~~w~~-~~~-----------------~~~~~~~~~~~p-dG~ilvs-~~~~V~~~d~~G~~~   68 (276)
T 3no2_A            9 VGGSGWNKIAIINKDTKEIVWEY-PLE-----------------KGWECNSVAATK-AGEILFS-YSKGAKMITRDGREL   68 (276)
T ss_dssp             EECTTCSEEEEEETTTTEEEEEE-ECC-----------------TTCCCCEEEECT-TSCEEEE-CBSEEEEECTTSCEE
T ss_pred             EeeCCCCEEEEEECCCCeEEEEe-CCC-----------------ccCCCcCeEECC-CCCEEEe-CCCCEEEECCCCCEE
Confidence            455567788888875554  651 110                 002567889999 8999994 456799999954333


Q ss_pred             EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cC----Cccc
Q 046018           81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QG----LAFA  154 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~----~~~~  154 (310)
                      -.+ ..  . ....+.++.+.++|+ +++++..                ..++++.++++++....+.  ..    ...+
T Consensus        69 W~~-~~--~-~~~~~~~~~~~~dG~-~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~  127 (276)
T 3no2_A           69 WNI-AA--P-AGCEMQTARILPDGN-ALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQF  127 (276)
T ss_dssp             EEE-EC--C-TTCEEEEEEECTTSC-EEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSC
T ss_pred             EEE-cC--C-CCccccccEECCCCC-EEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccc
Confidence            222 21  1 112356788999999 7777632                1567999998654333322  11    1246


Q ss_pred             ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCCCCCeeEECCCCCEEEEEecCCccceeeeeecccc-c
Q 046018          155 NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWL-G  232 (310)
Q Consensus       155 ~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~-g  232 (310)
                      .+++..++|+ ++++...+++|..||++|+     ..+. ..+..|.++.+.++|+++++...++.     +..+++. |
T Consensus       128 ~~v~~~~~G~-~lv~~~~~~~v~~~d~~G~-----~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~-----v~~~d~~tG  196 (276)
T 3no2_A          128 RQINKNKKGN-YLVPLFATSEVREIAPNGQ-----LLNSVKLSGTPFSSAFLDNGDCLVACGDAHC-----FVQLNLESN  196 (276)
T ss_dssp             SCCEECTTSC-EEEEETTTTEEEEECTTSC-----EEEEEECSSCCCEEEECTTSCEEEECBTTSE-----EEEECTTTC
T ss_pred             cCceECCCCC-EEEEecCCCEEEEECCCCC-----EEEEEECCCCccceeEcCCCCEEEEeCCCCe-----EEEEeCcCC
Confidence            7888999998 6677788899999998743     1121 23356888999999999999887765     4455444 9


Q ss_pred             cEEeecc
Q 046018          233 KTLLKLP  239 (310)
Q Consensus       233 ~~~~~~~  239 (310)
                      +.+.++.
T Consensus       197 ~~~w~~~  203 (276)
T 3no2_A          197 RIVRRVN  203 (276)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEec
Confidence            9887764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.28  E-value=9.1e-09  Score=85.64  Aligned_cols=199  Identities=12%  Similarity=0.117  Sum_probs=121.3

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ...+.||+++++++.||++.... .|+++|++ +++..-... .  ....+.+|+++++|+ +|+++..           
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~--g~~D~EGIa~~~~g~-~~vs~E~-----------   89 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-D--FVKDLETIEYIGDNQ-FVISDER-----------   89 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-S--SCSSEEEEEECSTTE-EEEEETT-----------
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-C--CCCChHHeEEeCCCE-EEEEECC-----------
Confidence            35688999998678899876664 59999999 444332221 1  124688999999997 8898744           


Q ss_pred             hhcCCCCceEEEEeCCC-CeEE---EEecCC-ccc-----ceEEEecCCCeEEEEecCCc-eEEEEEccCCCC-Ccceee
Q 046018          125 ILSGDKTGRLLKYEKTT-KEVT---ILLQGL-AFA-----NGVALSRDRTFILIAETSNC-RILRFWLHGPNS-GKQDVF  192 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~-~~~~---~~~~~~-~~~-----~gi~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~-~~~~~~  192 (310)
                            .++++.++... +...   ...-.. ..+     .||+++|++++||++..... +|+.++  +... ......
T Consensus        90 ------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~  161 (255)
T 3qqz_A           90 ------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHIS  161 (255)
T ss_dssp             ------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEE
T ss_pred             ------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeee
Confidence                  46677665432 2211   111111 123     79999999988999866554 788887  2100 111221


Q ss_pred             ee------C-CCCCCeeEECCC-CCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCC
Q 046018          193 AE------L-PGFPDNVRSNSN-GEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEK  264 (310)
Q Consensus       193 ~~------~-~~~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  264 (310)
                      ..      . -..+.++++|+. |++|+....++                                      +++.+|.+
T Consensus       162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~--------------------------------------~L~~~d~~  203 (255)
T 3qqz_A          162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESR--------------------------------------ALQEVTLV  203 (255)
T ss_dssp             ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTT--------------------------------------EEEEECTT
T ss_pred             cchhhccccccCCceeEEEcCCCCeEEEEECCCC--------------------------------------eEEEEcCC
Confidence            11      1 134678888876 46777655444                                      34566777


Q ss_pred             CCEEEEEEcCCCC-----eecceeEEEE-eCCEEEEecCCCCeEEEecc
Q 046018          265 GEVLEVLEDCEGK-----TLSFISEVEE-KDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       265 g~~~~~~~~~~g~-----~~~~~~~~~~-~~g~l~vgs~~~~~i~~~~~  307 (310)
                      |+++..+....|.     .+.++..++. .+|+||+.|= .+.+++|..
T Consensus       204 g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~~  251 (255)
T 3qqz_A          204 GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE-PNRFYRFTP  251 (255)
T ss_dssp             CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET-TTEEEEEEC
T ss_pred             CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC-CceEEEEEe
Confidence            7766666544331     2345566654 3667887764 467777654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.28  E-value=1.8e-09  Score=96.71  Aligned_cols=153  Identities=12%  Similarity=0.148  Sum_probs=105.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..++++++...||++.... .|..+|.++++.......     ...+.+++++|+|++++++......         
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~---------  277 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASN---------  277 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCT---------
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCc---------
Confidence            5678999999444577777554 489999988865433221     1247899999999877777632100         


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                       ....++.|+.||+.+++..........+.+++++|+++.+|++...++.|.+|+.++++   ..........+..++++
T Consensus       278 -~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~~~~~~~~~~s  353 (433)
T 3bws_A          278 -QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK---VQKSIPVFDKPNTIALS  353 (433)
T ss_dssp             -TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE---EEEEEECSSSEEEEEEC
T ss_pred             -cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc---EEEEecCCCCCCeEEEc
Confidence             00126789999998887655443344678999999999899998889999999987431   11111233557899999


Q ss_pred             CCCC-EEEEEecC
Q 046018          206 SNGE-FWVALHAK  217 (310)
Q Consensus       206 ~~G~-l~va~~~~  217 (310)
                      ++|+ ||++....
T Consensus       354 ~dg~~l~~~~~~~  366 (433)
T 3bws_A          354 PDGKYLYVSCRGP  366 (433)
T ss_dssp             TTSSEEEEEECCC
T ss_pred             CCCCEEEEEecCC
Confidence            9996 66665543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.28  E-value=9.6e-10  Score=102.23  Aligned_cols=151  Identities=11%  Similarity=0.133  Sum_probs=101.1

Q ss_pred             cceeceEEEeC----CCCcEEEEECC-CceEEEeCCCCeEEEEEeecC---C----ccccCCcceEEeCCCCEEEEEeCC
Q 046018           46 CGRPLGIRFDK----KTGDLYIADAY-LGFQVVGPEGGLATQLVTEAA---G----QPLRFTNDLDIDEHKGVIYFTDSS  113 (310)
Q Consensus        46 ~~~p~gl~~d~----~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~---~----~~~~~~~~i~~d~~g~~l~v~~~~  113 (310)
                      ...|.++++++    +...||++... ..|..+|..+.+.........   .    .+...+..|++++++.+++++...
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            45788999998    78889999864 458888998877644433210   0    011256789999988867777643


Q ss_pred             CchhhhhhhhhhhcCCCCceEEEEeCCCCeE-E-EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCccee
Q 046018          114 TSFQRRQFMSSILSGDKTGRLLKYEKTTKEV-T-ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDV  191 (310)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~  191 (310)
                                       ++.|..||.++.+. . ........|.+++|+||++++|++...++.|.++|..+++.  ...
T Consensus       301 -----------------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--~~~  361 (543)
T 1nir_A          301 -----------------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SAL  361 (543)
T ss_dssp             -----------------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEE
T ss_pred             -----------------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE--EEe
Confidence                             78899999876432 1 11233567899999999999999988889999999875422  111


Q ss_pred             eeeCCCCC---CeeE-ECCC-CCEEEEEec
Q 046018          192 FAELPGFP---DNVR-SNSN-GEFWVALHA  216 (310)
Q Consensus       192 ~~~~~~~p---~~i~-~d~~-G~l~va~~~  216 (310)
                      + .....|   .++. ++++ |.+|++...
T Consensus       362 i-~~g~~ph~g~g~~~~~p~~g~~~~s~~~  390 (543)
T 1nir_A          362 V-DVGKTPHPGRGANFVHPKYGPVWSTSHL  390 (543)
T ss_dssp             E-ECSSSBCCTTCEEEEETTTEEEEEEEBS
T ss_pred             e-ccCCCCCCCCCcccCCCCCccEEEeccC
Confidence            1 111122   2333 4666 788888763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.27  E-value=6.3e-09  Score=89.79  Aligned_cols=153  Identities=13%  Similarity=0.203  Sum_probs=99.6

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ..|..+++++ +|+ ||++....+ |..+|.+.+...........  ...+.+++++|+|+++|+++..           
T Consensus        84 ~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~-----------  149 (343)
T 1ri6_A           84 GSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK-----------  149 (343)
T ss_dssp             SCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG-----------
T ss_pred             CCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccC--CCCceEEEECCCCCEEEEecCC-----------
Confidence            4788999999 555 888877554 77777643332222222111  2358899999999978887632           


Q ss_pred             hhcCCCCceEEEEeCCC-CeEEEE-----e-cCCcccceEEEecCCCeEEEEecCCceEEEEEccC--CCCCcceeeeeC
Q 046018          125 ILSGDKTGRLLKYEKTT-KEVTIL-----L-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHG--PNSGKQDVFAEL  195 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~-~~~~~~-----~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~--~~~~~~~~~~~~  195 (310)
                            .+.|..||..+ ++....     . .....|.+++++||++.||++....+.|.+|+.+.  +...........
T Consensus       150 ------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~  223 (343)
T 1ri6_A          150 ------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  223 (343)
T ss_dssp             ------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             ------CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecccc
Confidence                  67789998876 655421     1 23346889999999999999987889999999863  211111222222


Q ss_pred             C------CCCCeeEECCCCC-EEEEEecCCc
Q 046018          196 P------GFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       196 ~------~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      +      ..|..++++++|+ ||++....+.
T Consensus       224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          224 PENFSDTRWAADIHITPDGRHLYACDRTASL  254 (343)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CccccccCCccceEECCCCCEEEEEecCCCE
Confidence            2      1344699999995 6666644443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.27  E-value=3.1e-10  Score=94.56  Aligned_cols=190  Identities=11%  Similarity=0.134  Sum_probs=118.1

Q ss_pred             EEEEeCCCCC-eE-EEEEeccccccccCCCCCccc-cccceeceEEEeCCCCcEEEEECC-CceEEEeCCC-CeEEEE--
Q 046018           11 ILKWQGDELG-WT-EFAVTTSQRKECVRPFAPDIE-HICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEG-GLATQL--   83 (310)
Q Consensus        11 i~~~~~~~~~-W~-~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~-~~~~~~--   83 (310)
                      -..|+++.+. |+ .-....+..+|..++....+. .....+.||++.+ +|.+||++.. ++++.++... +.+..+  
T Consensus        31 Gla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~  109 (255)
T 3qqz_A           31 SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVKILKK  109 (255)
T ss_dssp             EEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred             eeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeeeeeee
Confidence            3567776555 74 555566777777653211221 1225788999998 8899899876 4566664332 222211  


Q ss_pred             Eeec--CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEe--CCCCeEEEEec-------CCc
Q 046018           84 VTEA--AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYE--KTTKEVTILLQ-------GLA  152 (310)
Q Consensus        84 ~~~~--~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d--~~~~~~~~~~~-------~~~  152 (310)
                      ....  .........+|+.++++++||++...                ....|+.++  +.+..+++...       ...
T Consensus       110 ~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A          110 IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             eccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeecchhhccccccC
Confidence            1111  11122345899999999779998743                133688887  22223333211       234


Q ss_pred             ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC------CCCCCeeEECCCCCEEEEEecC
Q 046018          153 FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL------PGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~p~~i~~d~~G~l~va~~~~  217 (310)
                      .+.+++++|..++||+.+..++.|..+|.++.......+....      -..|.||++|++|+|||++-.+
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n  244 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN  244 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc
Confidence            5789999999888999989999999999876422111111100      1268999999999999996554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.25  E-value=6.3e-10  Score=95.24  Aligned_cols=163  Identities=15%  Similarity=0.150  Sum_probs=108.8

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecC----CccccCCcceEE---eCCCCEEEEE-eCCCch
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAA----GQPLRFTNDLDI---DEHKGVIYFT-DSSTSF  116 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~----~~~~~~~~~i~~---d~~g~~l~v~-~~~~~~  116 (310)
                      .-.|.++++|+.++.+|+++... .|.+++++++....+ ..+.    +.+...+.+|.+   |++|+ ||+. +....+
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af   89 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSF   89 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccccc
Confidence            35789999998789999999874 599999987655444 2211    223345789999   79987 8884 322111


Q ss_pred             hhhhhhhhhhcCCCCceEEEEeCC---CCeEEEEec--------------CCcccceEEEecCCCeEEEEecCC-ceEEE
Q 046018          117 QRRQFMSSILSGDKTGRLLKYEKT---TKEVTILLQ--------------GLAFANGVALSRDRTFILIAETSN-CRILR  178 (310)
Q Consensus       117 ~~~~~~~~~~~~~~~g~v~~~d~~---~~~~~~~~~--------------~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~  178 (310)
                      ....     ........|++||+.   +++......              ....+++|+++++|+ .||+++.. +.|++
T Consensus        90 ~~~g-----~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~r  163 (334)
T 2p9w_A           90 NFAD-----QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIAR  163 (334)
T ss_dssp             CTTS-----CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEE
T ss_pred             cccc-----cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEE
Confidence            1000     001124679999988   555433221              223589999999998 99999999 99999


Q ss_pred             EEccCCCCCcceeee-eCC-----CCCCeeEECCCCCEEEEEecCCc
Q 046018          179 FWLHGPNSGKQDVFA-ELP-----GFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~-~~~-----~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +++++...   ..+. ..+     -.++||++.++|++.++....++
T Consensus       164 V~pdG~~~---~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~  207 (334)
T 2p9w_A          164 VSADGKTV---STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA  207 (334)
T ss_dssp             ECTTSCCE---EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS
T ss_pred             EeCCCCEE---eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe
Confidence            99987522   2221 111     23689999999987776655555

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.21  E-value=1.4e-08  Score=87.40  Aligned_cols=179  Identities=7%  Similarity=0.025  Sum_probs=110.4

Q ss_pred             CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccc---eeceEEEeCCCC-cEEEEECCC-ceEEEeCC
Q 046018            2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICG---RPLGIRFDKKTG-DLYIADAYL-GFQVVGPE   76 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~gl~~d~~~g-~l~v~~~~~-gi~~~d~~   76 (310)
                      ++++..++.|..|+.....-+..                  .....   .|.++++++ +| .||++.... .|..+|..
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKV------------------ITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEE------------------EECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             EEEcCCCCeEEEEECCCCcEEEE------------------EEcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECC
Confidence            34566778888888866421110                  00112   578899999 65 688887764 49999998


Q ss_pred             CCeEEEEEeecC-CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC--CCceEEEEeCCCCeEEEEecCCcc
Q 046018           77 GGLATQLVTEAA-GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD--KTGRLLKYEKTTKEVTILLQGLAF  153 (310)
Q Consensus        77 ~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~--~~g~v~~~d~~~~~~~~~~~~~~~  153 (310)
                      +++......... ......+.+++++|+|+++|++........        ...  ..+.|+.||.++++..........
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  136 (337)
T 1pby_B           65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL--------THFEVQPTRVALYDAETLSRRKAFEAPRQ  136 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS--------SCEEECCCEEEEEETTTTEEEEEEECCSS
T ss_pred             CCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccc--------ccccccCceEEEEECCCCcEEEEEeCCCC
Confidence            877543333211 101226889999999987888852100000        000  147899999988876654444566


Q ss_pred             cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEE
Q 046018          154 ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVA  213 (310)
Q Consensus       154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va  213 (310)
                      +.+++++||++.||++   ++.|++||..++..   .........+..+.++++|. +|++
T Consensus       137 ~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          137 ITMLAWARDGSKLYGL---GRDLHVMDPEAGTL---VEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CCCEEECTTSSCEEEE---SSSEEEEETTTTEE---EEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             cceeEECCCCCEEEEe---CCeEEEEECCCCcE---eeeeeccccCCCceeCCCccEEeee
Confidence            8999999999989888   47899999875321   11111122223446667764 4444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.19  E-value=3e-10  Score=99.83  Aligned_cols=162  Identities=12%  Similarity=0.130  Sum_probs=102.7

Q ss_pred             cccceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeec--CCccccCCcceEEeCC---CCEEEEEeCCCchh
Q 046018           44 HICGRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEA--AGQPLRFTNDLDIDEH---KGVIYFTDSSTSFQ  117 (310)
Q Consensus        44 ~~~~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~---g~~l~v~~~~~~~~  117 (310)
                      .....|.+|++++ +|+ |||++..+.|++++.++...+.+....  .......+.+|+++|+   +.+||++...... 
T Consensus        15 ~~l~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~-   92 (353)
T 2g8s_A           15 DKLDHPWALAFLP-DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD-   92 (353)
T ss_dssp             EEESSEEEEEECS-TTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS-
T ss_pred             CCCCCcEEEEEcC-CCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC-
Confidence            3457899999999 899 999998767999987643212222111  0111235789999995   3349999742100 


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCCC-----eEEEEecC-------CcccceEEEecCCCeEEEEecC-------------
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTTK-----EVTILLQG-------LAFANGVALSRDRTFILIAETS-------------  172 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~~-----~~~~~~~~-------~~~~~gi~~~~d~~~lyv~~~~-------------  172 (310)
                               .+....+|.+++.+.+     ..+.+...       ...+++|+++|||. ||++...             
T Consensus        93 ---------~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~  162 (353)
T 2g8s_A           93 ---------DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKL  162 (353)
T ss_dssp             ---------SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSC
T ss_pred             ---------CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCC
Confidence                     0001346888876432     23333222       23378999999995 9998522             


Q ss_pred             CceEEEEEccCCCC----------CcceeeeeCCCCCCeeEECC-CCCEEEEEecC
Q 046018          173 NCRILRFWLHGPNS----------GKQDVFAELPGFPDNVRSNS-NGEFWVALHAK  217 (310)
Q Consensus       173 ~~~i~~~~~~~~~~----------~~~~~~~~~~~~p~~i~~d~-~G~l~va~~~~  217 (310)
                      .++|+++++++...          ...+.++.--..|.++++|+ +|+||++++..
T Consensus       163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS
T ss_pred             CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC
Confidence            36899999986411          02233433224689999999 89999999874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.18  E-value=2.3e-08  Score=88.04  Aligned_cols=65  Identities=8%  Similarity=0.039  Sum_probs=45.5

Q ss_pred             ceeceEEEeCCCCcEEEEEC----------CCceEEEeCCCCeEEEEEeecCC--ccccCCcceEEeCCCCEEEEEeC
Q 046018           47 GRPLGIRFDKKTGDLYIADA----------YLGFQVVGPEGGLATQLVTEAAG--QPLRFTNDLDIDEHKGVIYFTDS  112 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~----------~~gi~~~d~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~~l~v~~~  112 (310)
                      ..| +++++++...||++..          .+.|..+|..+.+....+.....  .....|.+|+++|+|++||+++.
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~  127 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA  127 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC
Confidence            567 9999995557999974          12388999987765433332111  11347999999999999999874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.17  E-value=5.9e-09  Score=87.27  Aligned_cols=152  Identities=11%  Similarity=0.103  Sum_probs=97.6

Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec--CCcccceEEEecCCCeEEEEe
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ--GLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~~~gi~~~~d~~~lyv~~  170 (310)
                      .++.+|+++++|+ ||+++..               ...+.|.++|+++++......  ...++.|++++  ++.||++.
T Consensus        21 ~f~~Gl~~~~dg~-Lyvstg~---------------~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t   82 (266)
T 2iwa_A           21 AFTQGLVYAENDT-LFESTGL---------------YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVV   82 (266)
T ss_dssp             CCEEEEEECSTTE-EEEEECS---------------TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred             CCcccEEEeCCCe-EEEECCC---------------CCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEE
Confidence            3678999999986 9999732               125689999999998765432  23344566665  56799999


Q ss_pred             cCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCC-CEEEEEecCCccceeeeeeccccccEEeeccchhhhhcc
Q 046018          171 TSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHS  247 (310)
Q Consensus       171 ~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~  247 (310)
                      ..++.++++|.+..     +....  .+ .|.+..+.+|| .+|+++ ..+.                            
T Consensus        83 ~~~~~v~viD~~t~-----~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~----------------------------  127 (266)
T 2iwa_A           83 WLKNIGFIYDRRTL-----SNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSI----------------------------  127 (266)
T ss_dssp             TTCSEEEEEETTTT-----EEEEEEECC-SSSCCEEEECSSSEEEEC-SSSE----------------------------
T ss_pred             ecCCEEEEEECCCC-----cEEEEEECC-CCCeEEEEECCCEEEEEC-CCCe----------------------------
Confidence            99999999997642     22222  22 23444344444 798876 3332                            


Q ss_pred             cccCCCCceEEEEECCCC-CEEEEEEc-CCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          248 LLVGGKPHATAIKLSEKG-EVLEVLED-CEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       248 ~~~~~~~~~~~~~~d~~g-~~~~~~~~-~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                                +..+|+.. +++....- ..+.++..+..+...+++||+..+.++.|.++|.
T Consensus       128 ----------l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          128 ----------LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             ----------EEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEET
T ss_pred             ----------EEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEEC
Confidence                      23445543 44444432 1234444455555557899998888899999886

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.16  E-value=1.6e-09  Score=98.25  Aligned_cols=168  Identities=12%  Similarity=0.154  Sum_probs=105.4

Q ss_pred             ccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCc----cccCCcceEEeCC---CCEEEEEeCCC
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQ----PLRFTNDLDIDEH---KGVIYFTDSST  114 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~---g~~l~v~~~~~  114 (310)
                      ......|.+|++++ +|+|||++...+ |++++..+++.+.+.......    ....+.+|+++|+   +++||++.+..
T Consensus        23 a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~  101 (454)
T 1cru_A           23 LSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK  101 (454)
T ss_dssp             ECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             ECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence            33457899999999 999999998864 999988766665554332110    1234569999994   44499997420


Q ss_pred             chhhhhhhhhhhcCCCCceEEEEeCCC--CeE---EEEec-----CCcccceEEEecCCCeEEEEecC------------
Q 046018          115 SFQRRQFMSSILSGDKTGRLLKYEKTT--KEV---TILLQ-----GLAFANGVALSRDRTFILIAETS------------  172 (310)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~~---~~~~~-----~~~~~~gi~~~~d~~~lyv~~~~------------  172 (310)
                      .-....     .......+|++++.+.  +++   +++..     ....+++|+++|||+ ||++.-.            
T Consensus       102 ~~~~~~-----~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A          102 NPKSTD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             CTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSC
T ss_pred             ccCCCc-----cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCccccccc
Confidence            000000     0000134688886532  222   23321     234578999999997 9997321            


Q ss_pred             --------------------CceEEEEEccCCCC-C-------cceeeeeCCCCCCeeEECCCCCEEEEEecC
Q 046018          173 --------------------NCRILRFWLHGPNS-G-------KQDVFAELPGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       173 --------------------~~~i~~~~~~~~~~-~-------~~~~~~~~~~~p~~i~~d~~G~l~va~~~~  217 (310)
                                          .++|+++++++... .       ..++++.--..|.++++|++|+||++++..
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~  248 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP  248 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCC
Confidence                                36899999886411 0       123343322468999999999999999864

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.15  E-value=8.7e-09  Score=89.63  Aligned_cols=166  Identities=14%  Similarity=0.130  Sum_probs=103.7

Q ss_pred             cceeceEEEeCC---CCcEEEEEC---CCceEEEeCCCC--------eEEEEEeecCCccccCCcceEEeCCCCEEEEEe
Q 046018           46 CGRPLGIRFDKK---TGDLYIADA---YLGFQVVGPEGG--------LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTD  111 (310)
Q Consensus        46 ~~~p~gl~~d~~---~g~l~v~~~---~~gi~~~d~~~~--------~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~  111 (310)
                      ...+.||+++++   ++.||++..   ..+|.|+..+.+        ..+.+.........+....|++++||. |||+.
T Consensus        79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~  157 (347)
T 3das_A           79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGT  157 (347)
T ss_dssp             TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEEC
T ss_pred             CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEE
Confidence            467899999983   588999753   245888866541        223343332223456788999999999 99996


Q ss_pred             CCCchhhhhhhhhhhcCCCCceEEEEeCCCC--------eEEEEecCCcccceEEEecCCCeEEEEecCCc---eEEEEE
Q 046018          112 SSTSFQRRQFMSSILSGDKTGRLLKYEKTTK--------EVTILLQGLAFANGVALSRDRTFILIAETSNC---RILRFW  180 (310)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~---~i~~~~  180 (310)
                      -......    ...-.....|.|+++++++.        ..+++..++..|.|++++|+++ ||+++...+   .|.++.
T Consensus       158 Gd~~~~~----~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~  232 (347)
T 3das_A          158 GESGDTG----LSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIK  232 (347)
T ss_dssp             BCTTCGG----GTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEEC
T ss_pred             CCCCCCc----cccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEc
Confidence            3210000    00001124688999999854        3456677888899999999876 999987653   455553


Q ss_pred             ccCCCCCcc------------eeeee-CC--CCCCeeEECCCCCEEEEEecCCc
Q 046018          181 LHGPNSGKQ------------DVFAE-LP--GFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       181 ~~~~~~~~~------------~~~~~-~~--~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                       .++.-+..            ..+.. .+  ..|.+|++. +|.+|++...+..
T Consensus       233 -~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~  284 (347)
T 3das_A          233 -PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGER  284 (347)
T ss_dssp             -TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCS
T ss_pred             -CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCE
Confidence             22221110            01111 11  256788886 5889999887654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=5.4e-09  Score=93.65  Aligned_cols=101  Identities=8%  Similarity=-0.135  Sum_probs=66.0

Q ss_pred             ccccccccCCCCCccccccceeceEEEeCCCCcEEEEEC----------CCceEEEeCCCCeEEEEEeecCCc---cccC
Q 046018           28 TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADA----------YLGFQVVGPEGGLATQLVTEAAGQ---PLRF   94 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~----------~~gi~~~d~~~~~~~~~~~~~~~~---~~~~   94 (310)
                      .+..+|..+.+..........| +++++++...|||++.          .+.|..+|..+.+...-+......   ....
T Consensus       100 ~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~  178 (426)
T 3c75_H          100 QQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY  178 (426)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             eEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence            3444555442212222334568 9999996667999984          134999999988764433321011   1346


Q ss_pred             CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEE
Q 046018           95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVT  145 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  145 (310)
                      |.+++++|||+++|+++..                ..+.|..+|.++++..
T Consensus       179 P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          179 QWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             GGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEE
T ss_pred             cceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEE
Confidence            8999999999999999742                2466888888877654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.15  E-value=4.2e-09  Score=92.48  Aligned_cols=129  Identities=11%  Similarity=0.112  Sum_probs=82.6

Q ss_pred             cceeceEEEeCC---CCcEEEEECC--------CceEEEeCCCC--eE---EEEEeecCC--ccccCCcceEEeCCCCEE
Q 046018           46 CGRPLGIRFDKK---TGDLYIADAY--------LGFQVVGPEGG--LA---TQLVTEAAG--QPLRFTNDLDIDEHKGVI  107 (310)
Q Consensus        46 ~~~p~gl~~d~~---~g~l~v~~~~--------~gi~~~d~~~~--~~---~~~~~~~~~--~~~~~~~~i~~d~~g~~l  107 (310)
                      ...+.+|+++++   ++.||++...        ..|.+++.+..  .+   +.+......  ...+.+++|+++|||. |
T Consensus        65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-L  143 (353)
T 2g8s_A           65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-L  143 (353)
T ss_dssp             TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-E
T ss_pred             CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-E
Confidence            357889999985   6899999753        24888765432  22   223332221  2346789999999997 9


Q ss_pred             EEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC-------------eEEEEecCCcccceEEEecCCCeEEEEecCCc
Q 046018          108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK-------------EVTILLQGLAFANGVALSRDRTFILIAETSNC  174 (310)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~  174 (310)
                      |++...... . .  ...-.....|+|+++++++.             ..+++..++..|.|++++|+...||+++...+
T Consensus       144 yv~~Gd~~~-~-~--~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~  219 (353)
T 2g8s_A          144 FIALGENNQ-R-P--TAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPR  219 (353)
T ss_dssp             EEEECCTTC-G-G--GGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSB
T ss_pred             EEEECCCCC-C-C--ccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCC
Confidence            999733110 0 0  00001123678999999853             34456667788999999995455999987643


Q ss_pred             ---eEEEE
Q 046018          175 ---RILRF  179 (310)
Q Consensus       175 ---~i~~~  179 (310)
                         .|.++
T Consensus       220 ~~dei~~i  227 (353)
T 2g8s_A          220 GGDEINIP  227 (353)
T ss_dssp             SCEEEECC
T ss_pred             CCcEEeEe
Confidence               55544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.12  E-value=6.2e-08  Score=83.24  Aligned_cols=150  Identities=17%  Similarity=0.086  Sum_probs=97.4

Q ss_pred             EEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC
Q 046018           61 LYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK  139 (310)
Q Consensus        61 l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~  139 (310)
                      ++++.. .+.|..+|..+++........ . ....|.+++++|+|+++|++...                 .+.|+.||.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~v~~~~-----------------~~~v~~~d~   63 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIA-D-AGPTPMVPMVAPGGRIAYATVNK-----------------SESLVKIDL   63 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECT-T-CTTCCCCEEECTTSSEEEEEETT-----------------TTEEEEEET
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcC-C-CCCCccceEEcCCCCEEEEEeCC-----------------CCeEEEEEC
Confidence            334433 345888899888764433321 1 00038899999999878888743                 678999999


Q ss_pred             CCCeEEEEecCCc------ccceEEEecCCCeEEEEec-----------CCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          140 TTKEVTILLQGLA------FANGVALSRDRTFILIAET-----------SNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       140 ~~~~~~~~~~~~~------~~~gi~~~~d~~~lyv~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                      ++++.........      .|.+++++||++.||++..           ..+.|++||.+++.   .......+..|.++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~  140 (337)
T 1pby_B           64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAFEAPRQITML  140 (337)
T ss_dssp             TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEEECCSSCCCE
T ss_pred             CCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc---EEEEEeCCCCccee
Confidence            8877654332222      6889999999998999852           35899999986431   11112234568899


Q ss_pred             EECCCCC-EEEEEecCCccceeeeeec-cccccEEeeccc
Q 046018          203 RSNSNGE-FWVALHAKKGLFGKLILLN-SWLGKTLLKLPL  240 (310)
Q Consensus       203 ~~d~~G~-l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~  240 (310)
                      +++++|+ ||++   ++.     +..+ ...++....++.
T Consensus       141 ~~s~dg~~l~~~---~~~-----i~~~d~~~~~~~~~~~~  172 (337)
T 1pby_B          141 AWARDGSKLYGL---GRD-----LHVMDPEAGTLVEDKPI  172 (337)
T ss_dssp             EECTTSSCEEEE---SSS-----EEEEETTTTEEEEEECS
T ss_pred             EECCCCCEEEEe---CCe-----EEEEECCCCcEeeeeec
Confidence            9999997 7777   233     3333 345666555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.09  E-value=1.9e-08  Score=88.95  Aligned_cols=74  Identities=14%  Similarity=0.039  Sum_probs=48.9

Q ss_pred             EEEecCCCeEEEEec---------CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEe-cCCccceeee
Q 046018          157 VALSRDRTFILIAET---------SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALH-AKKGLFGKLI  225 (310)
Q Consensus       157 i~~~~d~~~lyv~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~-~~~~~~~~~i  225 (310)
                      +++++|+++||++..         .++.|+++|..+.+.  ...+ ..++.|.++++++||+ ++++.+ ..+.+    .
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i-~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V----~  344 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVL----H  344 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEE-ECCCCcCeEEECCCCCeEEEEEcCCCCeE----E
Confidence            889999999999754         246899999764311  1112 3456799999999998 555555 45543    3


Q ss_pred             eeccccccEEee
Q 046018          226 LLNSWLGKTLLK  237 (310)
Q Consensus       226 ~~~~~~g~~~~~  237 (310)
                      .++..+++.+..
T Consensus       345 ViD~~t~~vv~~  356 (373)
T 2mad_H          345 IYDAGAGDQDQS  356 (373)
T ss_pred             EEECCCCCEEee
Confidence            334456666655

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.08  E-value=6.8e-08  Score=89.73  Aligned_cols=222  Identities=15%  Similarity=0.127  Sum_probs=127.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ +|+..++....+ |..+|..+..+..+ ..    ....+.+++++|+|+ .+++..             
T Consensus       345 ~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~~~~~-~~----~~~~v~~~~~s~dg~-~l~~~~-------------  404 (577)
T 2ymu_A          345 SSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL-TG----HSSSVRGVAFSPDGQ-TIASAS-------------  404 (577)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTCCEEEEE-EC----CSSCEEEEEECTTSS-CEEEEE-------------
T ss_pred             CCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCEEEEe-cC----CCCCeEEEEECCCCC-EEEEEe-------------
Confidence            4456789999 776555544444 67778765543333 21    112467899999999 444432             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                          .++.|..||........+........+++++||++.|..+ ..++.|..|+..+.   ....+.........++++
T Consensus       405 ----~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~s  476 (577)
T 2ymu_A          405 ----DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASA-SDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFS  476 (577)
T ss_dssp             ----TTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTSC---EEEEEECCSSCEEEEEEC
T ss_pred             ----CCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEE-cCCCEEEEEECCCC---EEEEEcCCCCCEEEEEEc
Confidence                2678899997654444444334456789999999955544 67789999996542   112222222345678999


Q ss_pred             CCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCc--------eEEEEECCCCCEEEEEEcCCCC
Q 046018          206 SNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPH--------ATAIKLSEKGEVLEVLEDCEGK  277 (310)
Q Consensus       206 ~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~g~~~~~~~~~~g~  277 (310)
                      ++|++.++....+.     +..++.+++.+..+......+.++.+.....        ..+.-+|.+++.+..+..+.  
T Consensus       477 pd~~~las~~~d~~-----i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~--  549 (577)
T 2ymu_A          477 PDGQTIASASDDKT-----VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS--  549 (577)
T ss_dssp             TTSCEEEEEETTSE-----EEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCS--
T ss_pred             CCCCEEEEEeCCCE-----EEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCC--
Confidence            99998777666554     5566667777666544333333444432222        12222354555555554332  


Q ss_pred             eecceeEEEEe-CCEEEEecCCCCeEEEe
Q 046018          278 TLSFISEVEEK-DGQLWMGSVLMPFIGIY  305 (310)
Q Consensus       278 ~~~~~~~~~~~-~g~l~vgs~~~~~i~~~  305 (310)
                        ..++.+... +|++.+..-.+..|.+.
T Consensus       550 --~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          550 --SSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             --SCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             --CCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence              234555544 44443333223445443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.07  E-value=1.2e-08  Score=89.68  Aligned_cols=153  Identities=15%  Similarity=0.136  Sum_probs=98.6

Q ss_pred             ceeceEEEeCCCC-cEEEEECC-CceEEEeCC-CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTG-DLYIADAY-LGFQVVGPE-GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g-~l~v~~~~-~gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ..|+++++++ +| .||+++.. ..|..++.+ +++++.+...........|.+++++|+|+++|+++..          
T Consensus       145 ~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~----------  213 (365)
T 1jof_A          145 TGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA----------  213 (365)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT----------
T ss_pred             CcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC----------
Confidence            5788999999 66 48888765 458888877 6766543222100113468999999999988988743          


Q ss_pred             hhhcCCCCceEEE--EeCCCCeEE----EEec---CC---c-------ccceEE-EecCCCeEEEEecCCc-----eEEE
Q 046018          124 SILSGDKTGRLLK--YEKTTKEVT----ILLQ---GL---A-------FANGVA-LSRDRTFILIAETSNC-----RILR  178 (310)
Q Consensus       124 ~~~~~~~~g~v~~--~d~~~~~~~----~~~~---~~---~-------~~~gi~-~~~d~~~lyv~~~~~~-----~i~~  178 (310)
                             .+.|..  ++.++++..    .+..   ..   .       .+.+++ ++|||++||+++...+     .|.+
T Consensus       214 -------~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v  286 (365)
T 1jof_A          214 -------GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG  286 (365)
T ss_dssp             -------TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred             -------CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEE
Confidence                   445544  555566543    1211   10   1       478899 9999999999887665     8999


Q ss_pred             EEccCCCCCccee---eee-CCCCCCeeEECC---CCC-EEEEEecCCc
Q 046018          179 FWLHGPNSGKQDV---FAE-LPGFPDNVRSNS---NGE-FWVALHAKKG  219 (310)
Q Consensus       179 ~~~~~~~~~~~~~---~~~-~~~~p~~i~~d~---~G~-l~va~~~~~~  219 (310)
                      |+.+.  .+....   ... ....|.++++++   +|+ |++++...+.
T Consensus       287 ~~~~~--~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~  333 (365)
T 1jof_A          287 FKLRD--CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EEECT--TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             EEECC--CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence            98862  122222   122 234688999999   775 6666554443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.07  E-value=4.9e-08  Score=85.23  Aligned_cols=157  Identities=10%  Similarity=0.070  Sum_probs=104.6

Q ss_pred             ccccceeceEEEeCCCCcEEEEEC------------C-CceEEEeCCC--CeEEEEEeec--CCccccCCcceEEeC--C
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADA------------Y-LGFQVVGPEG--GLATQLVTEA--AGQPLRFTNDLDIDE--H  103 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~------------~-~gi~~~d~~~--~~~~~~~~~~--~~~~~~~~~~i~~d~--~  103 (310)
                      ......|..|++++ +|.+|++..            . +.|+++|+++  .+.+.+....  .+...-.|.+|.+.+  +
T Consensus        46 ~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           46 KGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             TTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             CCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            33346788999999 899999972            2 3499999873  4444442221  112234789999865  4


Q ss_pred             CC-EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEec-------
Q 046018          104 KG-VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAET-------  171 (310)
Q Consensus       104 g~-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~-------  171 (310)
                      |+ +||+++...             ....-.+++++++++..+.+.    .....||.++++++|+ +|+++.       
T Consensus       125 g~~~L~Vvnh~~-------------~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~  190 (355)
T 3sre_A          125 NTVYLLVVNHPG-------------SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPY  190 (355)
T ss_dssp             CCEEEEEEECST-------------TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHH
T ss_pred             CcEEEEEEECCC-------------CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcc
Confidence            53 489988541             112345888998866554432    2356799999999987 888764       


Q ss_pred             ----------CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC-CEEEEEecCCc
Q 046018          172 ----------SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG-EFWVALHAKKG  219 (310)
Q Consensus       172 ----------~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~va~~~~~~  219 (310)
                                ..++|+++++.     ..+.+.+.-..|+|+++++|| .|||++...+.
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~~-----~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~  244 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSPN-----DVRVVAEGFDFANGINISPDGKYVYIAELLAHK  244 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECTT-----CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             cccchhhccCCccEEEEEECC-----eEEEeecCCcccCcceECCCCCEEEEEeCCCCe
Confidence                      24689998763     233333322469999999999 69999887665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.07  E-value=6.2e-08  Score=79.61  Aligned_cols=154  Identities=16%  Similarity=0.085  Sum_probs=102.6

Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET  171 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~  171 (310)
                      ..+..+++++. ++ ||+++..               .....|.++|+++++......-...+.|..++.++++||++..
T Consensus        20 ~~ftqGL~~~~-~~-LyestG~---------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw   82 (243)
T 3mbr_X           20 TAFTEGLFYLR-GH-LYESTGE---------------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW   82 (243)
T ss_dssp             TCCEEEEEEET-TE-EEEEECC---------------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred             ccccccEEEEC-CE-EEEECCC---------------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe
Confidence            34667899986 55 9999842               1245799999999987654433333444444445677999988


Q ss_pred             CCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccc
Q 046018          172 SNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLL  249 (310)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~  249 (310)
                      .++.+++||.++.     +....  .++.+.+++.|. +.||+++. ...                              
T Consensus        83 ~~~~v~v~D~~tl-----~~~~ti~~~~~Gwglt~dg-~~L~vSdg-s~~------------------------------  125 (243)
T 3mbr_X           83 RNHEGFVYDLATL-----TPRARFRYPGEGWALTSDD-SHLYMSDG-TAV------------------------------  125 (243)
T ss_dssp             SSSEEEEEETTTT-----EEEEEEECSSCCCEEEECS-SCEEEECS-SSE------------------------------
T ss_pred             eCCEEEEEECCcC-----cEEEEEeCCCCceEEeeCC-CEEEEECC-CCe------------------------------
Confidence            8999999998642     22222  335567887663 57999873 332                              


Q ss_pred             cCCCCceEEEEECCC-CCEEEEEEc-CCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          250 VGGKPHATAIKLSEK-GEVLEVLED-CEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       250 ~~~~~~~~~~~~d~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                              +..+|+. .+++..+.- .+|.++..+..+...+|+||+..+.++.|.++|.
T Consensus       126 --------l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp  177 (243)
T 3mbr_X          126 --------IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDP  177 (243)
T ss_dssp             --------EEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECT
T ss_pred             --------EEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEEC
Confidence                    2345554 344444432 2455556666666779999999999999999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.06  E-value=1.3e-07  Score=88.00  Aligned_cols=167  Identities=10%  Similarity=-0.003  Sum_probs=113.4

Q ss_pred             cceeceEEEeCCCCcEEEEECCCceEEEeCC--CCeEEEEEeecCCccccCCcceEEe----CCCCEEEEEeCCCchhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPE--GGLATQLVTEAAGQPLRFTNDLDID----EHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d----~~g~~l~v~~~~~~~~~~  119 (310)
                      ...|++++++++...||++.....|..+|..  +.+..  .....+   ..|.+++++    |||+++|+++..      
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--~~i~~G---~~P~~ia~s~~~~pDGk~l~v~n~~------  264 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIG---SEARSIETSKMEGWEDKYAIAGAYW------  264 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECC---SEEEEEEECCSTTCTTTEEEEEEEE------
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--EEEecC---CCCceeEEccccCCCCCEEEEEEcc------
Confidence            3578899999944568998766669999985  55432  222122   358899999    699999999843      


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEEEEec-CC-----------cccceEEEecCCCeEEEEecCCceEEEEEccCCCCC
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQ-GL-----------AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSG  187 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~-----------~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~  187 (310)
                                 .+.|..+|..+.+...... ..           ....+|..++++..++++...++.|+.+|.....  
T Consensus       265 -----------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~--  331 (567)
T 1qks_A          265 -----------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--  331 (567)
T ss_dssp             -----------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS--
T ss_pred             -----------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc--
Confidence                       6788999988765543221 11           1335788898888778887888999999976421  


Q ss_pred             ccee-eeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          188 KQDV-FAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       188 ~~~~-~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      .... .......|.++.+|++|+ +|+++...+.+    ..++..+++++..++.
T Consensus       332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V----~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKL----VVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEE----EEEETTTTEEEEEEEC
T ss_pred             cceeeeeeccccccCceECCCCCEEEEEeCCCCeE----EEEECCCCcEEEEEec
Confidence            1111 112334678899999996 56777666664    4455677777666655

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.06  E-value=1.8e-07  Score=80.82  Aligned_cols=146  Identities=12%  Similarity=0.157  Sum_probs=96.1

Q ss_pred             eeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....+++++ +++.+++.... .|..++.++++.......    ....+..++++|+|++|..+.               
T Consensus       124 ~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~lasg~---------------  183 (321)
T 3ow8_A          124 DAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDT----RGKFILSIAYSPDGKYLASGA---------------  183 (321)
T ss_dssp             CCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEEC----SSSCEEEEEECTTSSEEEEEE---------------
T ss_pred             cEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecC----CCceEEEEEECCCCCEEEEEc---------------
Confidence            345689999 77766665554 488888887765433221    123467899999999444433               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                         .++.|..||..+++........ .....++++||++. +++...++.|.+||......  ...+..-......+++.
T Consensus       184 ---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s  257 (321)
T 3ow8_A          184 ---IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANL--AGTLSGHASWVLNVAFC  257 (321)
T ss_dssp             ---TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEEEETTTCCE--EEEECCCSSCEEEEEEC
T ss_pred             ---CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCcce--eEEEcCCCCceEEEEEC
Confidence               2778999999888765444333 34588999999984 45557788999999874311  11121122334678999


Q ss_pred             CCCCEEEEEecCCc
Q 046018          206 SNGEFWVALHAKKG  219 (310)
Q Consensus       206 ~~G~l~va~~~~~~  219 (310)
                      ++|.+.++....+.
T Consensus       258 p~~~~l~s~s~D~~  271 (321)
T 3ow8_A          258 PDDTHFVSSSSDKS  271 (321)
T ss_dssp             TTSSEEEEEETTSC
T ss_pred             CCCCEEEEEeCCCc
Confidence            99988777666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.04  E-value=6e-08  Score=85.10  Aligned_cols=154  Identities=11%  Similarity=0.043  Sum_probs=91.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....+++.+ ++++.++...+.|..+|..+++...........-...+..++++|+|+ ..++..              
T Consensus        95 ~~V~~~~~s~-d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs--------------  158 (357)
T 4g56_B           95 AGVTDVAWVS-EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGG--------------  158 (357)
T ss_dssp             SCEEEEEEET-TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEE--------------
T ss_pred             CCEEEEEEcC-CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEe--------------
Confidence            3466899999 888888876655777787766432211110001123467899999999 444432              


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                         .++.|..||..+++....... ......+++++++..++++...++.|.+||...++.............+..+++.
T Consensus       159 ---~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~s  235 (357)
T 4g56_B          159 ---KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWH  235 (357)
T ss_dssp             ---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEEC
T ss_pred             ---CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhh
Confidence               277899999988876654433 3346789999998766777677889999998643221111111112335678888


Q ss_pred             CCC-CEEEEEecCCc
Q 046018          206 SNG-EFWVALHAKKG  219 (310)
Q Consensus       206 ~~G-~l~va~~~~~~  219 (310)
                      +++ +++++....+.
T Consensus       236 p~~~~~la~g~~d~~  250 (357)
T 4g56_B          236 PEKDDTFACGDETGN  250 (357)
T ss_dssp             TTSTTEEEEEESSSC
T ss_pred             hcccceEEEeecccc
Confidence            875 56555444443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.04  E-value=8.8e-07  Score=76.39  Aligned_cols=161  Identities=9%  Similarity=-0.002  Sum_probs=102.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ ++.+.++....+ |..+|..+++.......    ....+..++++|+|+ .+++..             
T Consensus        81 ~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~----~~~~~~~~~~spdg~-~l~~g~-------------  141 (321)
T 3ow8_A           81 LGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDA----GPVDAWTLAFSPDSQ-YLATGT-------------  141 (321)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEEC----CTTCCCCEEECTTSS-EEEEEC-------------
T ss_pred             CCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeC----CCccEEEEEECCCCC-EEEEEc-------------
Confidence            3455788888 666665555444 78889988765433322    112467899999999 555543             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEE-ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTIL-LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~-~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          ..+.+..|+.++++.... .........++++||++.|+. ...++.|.+||...++.  ...+.........+++
T Consensus       142 ----~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las-g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~  214 (321)
T 3ow8_A          142 ----HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS-GAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTF  214 (321)
T ss_dssp             ----TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEE--EEEECCCSSCCCEEEE
T ss_pred             ----CCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE-EcCCCeEEEEECCCCcE--EEEEcccCCceeEEEE
Confidence                278899999887765443 333344678999999995554 46778999999864311  1112111233578999


Q ss_pred             CCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018          205 NSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL  238 (310)
Q Consensus       205 d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~  238 (310)
                      +++|++.++....+.     +..++ ..++....+
T Consensus       215 spd~~~l~s~s~dg~-----i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          215 SPDSQLLVTASDDGY-----IKIYDVQHANLAGTL  244 (321)
T ss_dssp             CTTSCEEEEECTTSC-----EEEEETTTCCEEEEE
T ss_pred             cCCCCEEEEEcCCCe-----EEEEECCCcceeEEE
Confidence            999988777666554     44443 344444444

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.02  E-value=2.2e-06  Score=73.31  Aligned_cols=148  Identities=10%  Similarity=0.023  Sum_probs=96.0

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ +++ |+++...+.|..+|.++++........ . ....+..++++++++.++++.              
T Consensus        98 ~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~--------------  160 (337)
T 1gxr_A           98 NYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELT-S-SAPACYALAISPDSKVCFSCC--------------  160 (337)
T ss_dssp             SBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEE-C-SSSCEEEEEECTTSSEEEEEE--------------
T ss_pred             CcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecc-c-CCCceEEEEECCCCCEEEEEe--------------
Confidence            4567899999 665 445544445888898877632222211 1 122467899999999555554              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          .++.|..||..+++...... .......++++|+++.|+.+ ..++.|..||...+.   .......+.....+++
T Consensus       161 ----~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~---~~~~~~~~~~v~~~~~  232 (337)
T 1gxr_A          161 ----SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGR---QLQQHDFTSQIFSLGY  232 (337)
T ss_dssp             ----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE---EEEEEECSSCEEEEEE
T ss_pred             ----CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE-ecCCcEEEEECCCCc---eEeeecCCCceEEEEE
Confidence                26789999998876654433 23456889999999866555 577899999987431   1111123345678999


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      +++|++.++....+.
T Consensus       233 s~~~~~l~~~~~~~~  247 (337)
T 1gxr_A          233 CPTGEWLAVGMESSN  247 (337)
T ss_dssp             CTTSSEEEEEETTSC
T ss_pred             CCCCCEEEEEcCCCc
Confidence            999987776665554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.02  E-value=1.2e-08  Score=93.88  Aligned_cols=169  Identities=13%  Similarity=0.115  Sum_probs=111.6

Q ss_pred             ceeceEEE-e-CCCCcEEEEEC-----------------CC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCE
Q 046018           47 GRPLGIRF-D-KKTGDLYIADA-----------------YL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGV  106 (310)
Q Consensus        47 ~~p~gl~~-d-~~~g~l~v~~~-----------------~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~  106 (310)
                      ..|+|+++ . ++.+.||++..                 .. -+..+|.++.++.  .....+  . .|..++++++|++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~--~qI~Vg--g-~pd~~~~spdGk~  208 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA--WQVLVS--G-NLDNCDADYEGKW  208 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE--EEEEES--S-CCCCEEECSSSSE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE--EEEEeC--C-CccceEECCCCCE
Confidence            57999997 4 65778998852                 11 2788899987643  222111  1 5889999999999


Q ss_pred             EEEEeCCCchh--------------h---h-hhhhhhhcC--CCCceEEEEeCCC--CeE-EEEecCCcccceEEEecCC
Q 046018          107 IYFTDSSTSFQ--------------R---R-QFMSSILSG--DKTGRLLKYEKTT--KEV-TILLQGLAFANGVALSRDR  163 (310)
Q Consensus       107 l~v~~~~~~~~--------------~---~-~~~~~~~~~--~~~g~v~~~d~~~--~~~-~~~~~~~~~~~gi~~~~d~  163 (310)
                      +|++.....-.              .   . +.....-.+  ..-+.|..+|..+  ++. ....+....|+|+.++|||
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDG  288 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDK  288 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTS
T ss_pred             EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCC
Confidence            99998543110              0   0 000000001  1124588999886  333 2233345689999999999


Q ss_pred             CeEEEEecCCceEEEEEccCC------CCCcc-eeeee--CCCCCCeeEECCCCCEEEEEecCCcc
Q 046018          164 TFILIAETSNCRILRFWLHGP------NSGKQ-DVFAE--LPGFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       164 ~~lyv~~~~~~~i~~~~~~~~------~~~~~-~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                      +++|+++..++.|.+||.+..      ++... .....  ....|..+++|++|++|++..-.+++
T Consensus       289 k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV  354 (595)
T 1fwx_A          289 KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQV  354 (595)
T ss_dssp             SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcE
Confidence            999999999999999998732      11111 12233  33579999999999999999887774

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.01  E-value=1.3e-08  Score=89.84  Aligned_cols=124  Identities=11%  Similarity=0.021  Sum_probs=87.1

Q ss_pred             eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec------
Q 046018           98 LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET------  171 (310)
Q Consensus        98 i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~------  171 (310)
                      .+..|+++++|+++...             ....+.|+.+|.++++..........|+ ++++|||++||++++      
T Consensus        38 ~~~~pd~~~vyV~~~~~-------------~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~  103 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAH-------------FAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIA  103 (386)
T ss_dssp             CCCCCCTTEEEEEECGG-------------GCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETT
T ss_pred             eccCCCCCEEEEEcCcc-------------cCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccc
Confidence            34568999999999531             0125789999999888765444455675 999999999999975      


Q ss_pred             ---CCceEEEEEccCCCCCcceeeeeC-------CCCCCeeEECCCCC-EEEEEec-CCccceeeeeeccccccEEeecc
Q 046018          172 ---SNCRILRFWLHGPNSGKQDVFAEL-------PGFPDNVRSNSNGE-FWVALHA-KKGLFGKLILLNSWLGKTLLKLP  239 (310)
Q Consensus       172 ---~~~~i~~~~~~~~~~~~~~~~~~~-------~~~p~~i~~d~~G~-l~va~~~-~~~~~~~~i~~~~~~g~~~~~~~  239 (310)
                         .++.|.+||..+.+.  ...+.-.       ...|.++++++||+ +||++.. .+.+    ..++...++.+..++
T Consensus       104 ~G~~~~~VsviD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V----sVID~~t~~vv~tI~  177 (386)
T 3sjl_D          104 RGERTDYVEVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV----GVVDLEGKAFKRMLD  177 (386)
T ss_dssp             EEEEEEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE----EEEETTTTEEEEEEE
T ss_pred             cCCCCCEEEEEECCCCeE--EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE----EEEECCCCcEEEEEE
Confidence               256799999875321  1111111       12689999999995 8888764 4443    455677888888887


Q ss_pred             ch
Q 046018          240 LS  241 (310)
Q Consensus       240 ~~  241 (310)
                      .+
T Consensus       178 v~  179 (386)
T 3sjl_D          178 VP  179 (386)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.01  E-value=1.5e-07  Score=82.50  Aligned_cols=156  Identities=10%  Similarity=0.077  Sum_probs=107.2

Q ss_pred             cceeceEEEeCCCCcEEEEECC-------------C---ceEEEeCCCC--eEEEEEeec--CCccccCCcceEEe-C--
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY-------------L---GFQVVGPEGG--LATQLVTEA--AGQPLRFTNDLDID-E--  102 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~-------------~---gi~~~d~~~~--~~~~~~~~~--~~~~~~~~~~i~~d-~--  102 (310)
                      ...+.++.+|+ .|+|||.|.+             .   .|..+|..+.  ++.+....+  ...+..+.++|++| .  
T Consensus        86 lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~  164 (381)
T 3q6k_A           86 LTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP  164 (381)
T ss_dssp             SSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred             eEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence            35677999999 9999999975             1   2788999998  665443332  12234578999999 2  


Q ss_pred             C----CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-----C--------------CcccceEEE
Q 046018          103 H----KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-----G--------------LAFANGVAL  159 (310)
Q Consensus       103 ~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~--------------~~~~~gi~~  159 (310)
                      +    +.++|++|..                 .+.|.+||.++++..++..     .              .....||++
T Consensus       165 ~~~c~~~~aYItD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaL  227 (381)
T 3q6k_A          165 KGDCSETFVYITNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITL  227 (381)
T ss_dssp             TTTSCSEEEEEEETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEE
T ss_pred             CCCCCccEEEEEcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEe
Confidence            2    4459999964                 5678889988877655442     1              013568999


Q ss_pred             ecC----CCeEEEEecCCceEEEEEcc---CCC-CCcceeeeeCCCCCC--eeEEC-CCCCEEEEEecCCc
Q 046018          160 SRD----RTFILIAETSNCRILRFWLH---GPN-SGKQDVFAELPGFPD--NVRSN-SNGEFWVALHAKKG  219 (310)
Q Consensus       160 ~~d----~~~lyv~~~~~~~i~~~~~~---~~~-~~~~~~~~~~~~~p~--~i~~d-~~G~l~va~~~~~~  219 (310)
                      +|+    ++.||+.-..+..++++..+   ... ....+.+.+.+...+  ++++| ++|+||++....+.
T Consensus       228 sp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a  298 (381)
T 3q6k_A          228 GDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQ  298 (381)
T ss_dssp             CCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred             cCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence            998    88999998888899999753   111 122333433321234  46786 88999999987775

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.00  E-value=1.1e-08  Score=91.58  Aligned_cols=180  Identities=9%  Similarity=-0.041  Sum_probs=109.2

Q ss_pred             CCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec---------C
Q 046018          102 EHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET---------S  172 (310)
Q Consensus       102 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~---------~  172 (310)
                      ++++++|+++....             ...+.|..+|+++.+..........| +++++||+++||++++         .
T Consensus        82 ~~~~~vyV~n~~~~-------------~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~  147 (426)
T 3c75_H           82 PDARRVYIQDPAHF-------------AAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKR  147 (426)
T ss_dssp             CCTTEEEEEECTTT-------------CSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             CCCCEEEEECCCcC-------------CCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCC
Confidence            57778999995410             00178999999998876555455678 9999999999999985         3


Q ss_pred             CceEEEEEccCCCCCcceeeeeC-------CCCCCeeEECCCC-CEEEEEec-CCccceeeeeeccccccEEeeccchhh
Q 046018          173 NCRILRFWLHGPNSGKQDVFAEL-------PGFPDNVRSNSNG-EFWVALHA-KKGLFGKLILLNSWLGKTLLKLPLSFR  243 (310)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~~-------~~~p~~i~~d~~G-~l~va~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~~  243 (310)
                      ++.|.++|....+.  ...+.-.       ...|.++++++|| .+||++.. .+.+    ..++...++.+..++++..
T Consensus       148 ~~~VsviD~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~V----sVID~~t~kvv~~I~v~g~  221 (426)
T 3c75_H          148 TDYVEVFDPVTFLP--IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAV----GVVDLEGKTFDRMLDVPDC  221 (426)
T ss_dssp             EEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEE----EEEETTTTEEEEEEECCSE
T ss_pred             CCEEEEEECCCCcE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeE----EEEECCCCeEEEEEEcCCc
Confidence            57899999775322  1111100       1368999999999 58888764 4443    4556677888888876431


Q ss_pred             hhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeec-------------cee-EEEEeCCEEEEecCCCCeEEEecc
Q 046018          244 QLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLS-------------FIS-EVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~-------------~~~-~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                       .  .... .....++.+.++|++...-. .++....             ... .....++++|+.+. .+.|+++|.
T Consensus       222 -~--~~~p-~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~  293 (426)
T 3c75_H          222 -Y--HIFP-ASPTVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADL  293 (426)
T ss_dssp             -E--EEEE-EETTEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEE
T ss_pred             -e--eecc-CCCcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEec
Confidence             0  0000 01123445556666554432 2222110             000 11123567777776 567877775

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.00  E-value=9.7e-08  Score=84.43  Aligned_cols=122  Identities=9%  Similarity=-0.095  Sum_probs=81.7

Q ss_pred             eEEeCCCCEEEEEeC-CCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec-----
Q 046018           98 LDIDEHKGVIYFTDS-STSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET-----  171 (310)
Q Consensus        98 i~~d~~g~~l~v~~~-~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~-----  171 (310)
                      +...++++++|+++. ....             .. .|+.||+++++..........| +++++||+++||++++     
T Consensus        26 ~~~~~~~~~~yv~~~~~~~~-------------~~-~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~   90 (373)
T 2mad_H           26 EAPGADGRRSYINLPAHHSA-------------II-QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             ccCCCCCCEEEEeCCcccCC-------------cc-EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEecccccc
Confidence            344578888999985 3100             01 7899999988765544445567 9999999999999975     


Q ss_pred             ----CCceEEEEEccCCCCCcceeeeeC-------CCCCCeeEECCCCC-EEEEEec-CCccceeeeeeccccccEEee-
Q 046018          172 ----SNCRILRFWLHGPNSGKQDVFAEL-------PGFPDNVRSNSNGE-FWVALHA-KKGLFGKLILLNSWLGKTLLK-  237 (310)
Q Consensus       172 ----~~~~i~~~~~~~~~~~~~~~~~~~-------~~~p~~i~~d~~G~-l~va~~~-~~~~~~~~i~~~~~~g~~~~~-  237 (310)
                          .++.|.+||....+.  ...+...       ...|.++++++||+ ||+++.. .+.+    ..++ ..++.+.. 
T Consensus        91 ~rg~~~~~v~viD~~t~~~--~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v----~viD-~t~~~~~~~  163 (373)
T 2mad_H           91 AKGKRTDYVEVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV----GLVV-QGGSSDDQL  163 (373)
T ss_pred             ccCCCCCeEEEEECCCCcE--EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE----EEEE-CCCCEEeEE
Confidence                356899999864211  1111100       13588999999995 7877754 3443    3445 77788877 


Q ss_pred             ccch
Q 046018          238 LPLS  241 (310)
Q Consensus       238 ~~~~  241 (310)
                      ++.+
T Consensus       164 i~~~  167 (373)
T 2mad_H          164 LSSP  167 (373)
T ss_pred             cCCC
Confidence            7765

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.00  E-value=4e-07  Score=84.52  Aligned_cols=160  Identities=15%  Similarity=0.123  Sum_probs=102.4

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++.+ +++..++... ..|..++.++.....+ ..    ....+.+++++|+++ ..++..             
T Consensus       263 ~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~-~~----h~~~v~~~~~~~~~~-~l~t~~-------------  322 (577)
T 2ymu_A          263 SSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTL-TG----HSSSVWGVAFSPDGQ-TIASAS-------------  322 (577)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEE-CC----CSSCEEEEEECTTSS-EEEEEE-------------
T ss_pred             CCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEE-ec----CCCCeEEEEECCCCC-EEEEEe-------------
Confidence            4556889988 6665554444 4477778776544332 11    122467899999999 554442             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                          .++.|..||..+.....+.........++++||++.|..+ ..++.|.+|+..+.   ....+.........++++
T Consensus       323 ----~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~v~~~~~~~~---~~~~~~~~~~~v~~~~~s  394 (577)
T 2ymu_A          323 ----DDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASA-SDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFS  394 (577)
T ss_dssp             ----TTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTCC---EEEEEECCSSCEEEEEEC
T ss_pred             ----CCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEcCCCC---EEEEecCCCCCeEEEEEC
Confidence                2678999998877666554434456789999999965544 66788999986532   112222222345779999


Q ss_pred             CCCCEEEEEecCCccceeeeeeccccccEEeecc
Q 046018          206 SNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLP  239 (310)
Q Consensus       206 ~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~  239 (310)
                      ++|++.++....+.     +..++..++.+..+.
T Consensus       395 ~dg~~l~~~~~d~~-----v~~~~~~~~~~~~~~  423 (577)
T 2ymu_A          395 PDGQTIASASDDKT-----VKLWNRNGQLLQTLT  423 (577)
T ss_dssp             TTSSCEEEEETTSE-----EEEECTTCCEEEEEE
T ss_pred             CCCCEEEEEeCCCE-----EEEEeCCCCEEEEec
Confidence            99987666655554     556666666665543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.99  E-value=8.9e-08  Score=79.38  Aligned_cols=154  Identities=12%  Similarity=0.019  Sum_probs=99.7

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN  173 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~  173 (310)
                      +..+|.++ ++. ||+++..               .....|.++|+++++......-...+-|..+++++++||++...+
T Consensus        44 ftqGL~~~-~~~-LyestG~---------------~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           44 FTEGFFYR-NGY-FYESTGL---------------NGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEEE-TTE-EEEEEEE---------------TTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS
T ss_pred             ccceEEEE-CCE-EEEECCC---------------CCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC
Confidence            45788988 665 9999832               124579999999998765443333343433444566799998889


Q ss_pred             ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCC
Q 046018          174 CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGK  253 (310)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~  253 (310)
                      +.+++||+++.+.  ...+ ..++.+.+++.|. +.||+++. ...                                  
T Consensus       107 ~~v~v~D~~t~~~--~~ti-~~~~eG~glt~dg-~~L~~SdG-s~~----------------------------------  147 (262)
T 3nol_A          107 GLGFVWNIRNLRQ--VRSF-NYDGEGWGLTHND-QYLIMSDG-TPV----------------------------------  147 (262)
T ss_dssp             SEEEEEETTTCCE--EEEE-ECSSCCCCEEECS-SCEEECCS-SSE----------------------------------
T ss_pred             CEEEEEECccCcE--EEEE-ECCCCceEEecCC-CEEEEECC-CCe----------------------------------
Confidence            9999999874311  1122 1234556777653 57888863 332                                  


Q ss_pred             CceEEEEECCC-CCEEEEEEc-CCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          254 PHATAIKLSEK-GEVLEVLED-CEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       254 ~~~~~~~~d~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                          +..+|+. .+++....- .+|.++..++.+...+|+||+..+.++.|+++|.
T Consensus       148 ----i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp  199 (262)
T 3nol_A          148 ----LRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDP  199 (262)
T ss_dssp             ----EEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECT
T ss_pred             ----EEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEEC
Confidence                2345654 455554432 2355555566565668899999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.99  E-value=7.8e-07  Score=76.18  Aligned_cols=146  Identities=4%  Similarity=-0.009  Sum_probs=99.2

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++ |+++...+.|..+|.++++.......    ....+..++++|++++++++.              
T Consensus       142 ~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~--------------  202 (337)
T 1gxr_A          142 PACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQG----HTDGASCIDISNDGTKLWTGG--------------  202 (337)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEE--------------
T ss_pred             CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeec----ccCceEEEEECCCCCEEEEEe--------------
Confidence            4466899998 555 55555555689999988765433221    123577899999999555544              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                          .++.|..||..+++.............++++|+++.++++ ..++.|..|+.....   ...+.........++++
T Consensus       203 ----~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~  274 (337)
T 1gxr_A          203 ----LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPD---KYQLHLHESCVLSLKFA  274 (337)
T ss_dssp             ----TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSC---EEEECCCSSCEEEEEEC
T ss_pred             ----cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEE-cCCCcEEEEECCCCC---eEEEcCCccceeEEEEC
Confidence                2788999999887765544444557889999999966655 567899999987532   12222223445789999


Q ss_pred             CCCCEEEEEecCCc
Q 046018          206 SNGEFWVALHAKKG  219 (310)
Q Consensus       206 ~~G~l~va~~~~~~  219 (310)
                      ++|++.++....+.
T Consensus       275 ~~~~~l~~~~~dg~  288 (337)
T 1gxr_A          275 YCGKWFVSTGKDNL  288 (337)
T ss_dssp             TTSSEEEEEETTSE
T ss_pred             CCCCEEEEecCCCc
Confidence            99987776665554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.99  E-value=2.3e-08  Score=89.13  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=93.7

Q ss_pred             eEEEeCCCCcEEEEEC--------------------CCceEEEeCCCCeEEEEEeecCCccccCCcceEE--eCCCCEEE
Q 046018           51 GIRFDKKTGDLYIADA--------------------YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI--DEHKGVIY  108 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~--------------------~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~--d~~g~~l~  108 (310)
                      .+.+.+ +++++++..                    .+.|..+|.++++....+..  +.....|.+|.+  +|+|+++|
T Consensus       192 d~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v--g~~g~~P~~i~f~~~Pdg~~aY  268 (462)
T 2ece_A          192 DFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL--GEENRMALELRPLHDPTKLMGF  268 (462)
T ss_dssp             CEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES--CTTEEEEEEEEECSSTTCCEEE
T ss_pred             eEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec--CCCCCccceeEeeECCCCCEEE
Confidence            466788 565555542                    34599999988765443332  222346778877  99999999


Q ss_pred             EEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe----cC-----------------CcccceEEEecCCCeEE
Q 046018          109 FTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL----QG-----------------LAFANGVALSRDRTFIL  167 (310)
Q Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~~-----------------~~~~~gi~~~~d~~~ly  167 (310)
                      ++..-            .....++.|++|..+.++++...    ..                 ...|.+|.+++|+++||
T Consensus       269 V~~e~------------~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY  336 (462)
T 2ece_A          269 INMVV------------SLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY  336 (462)
T ss_dssp             EEEEE------------ETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred             EEEee------------eccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence            98740            00012556655444345443211    00                 24578999999999999


Q ss_pred             EEecCCceEEEEEccCCCCCcceeeee-----------------CCCCCCeeEECCCCC-EEEEE
Q 046018          168 IAETSNCRILRFWLHGPNSGKQDVFAE-----------------LPGFPDNVRSNSNGE-FWVAL  214 (310)
Q Consensus       168 v~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------~~~~p~~i~~d~~G~-l~va~  214 (310)
                      +++..++.|.+|+....  +..+....                 ..+.|.++.+++||+ |||++
T Consensus       337 VSnrg~d~VavfdV~d~--~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          337 LSLWGIGEVRQYDISNP--FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEETTTTEEEEEECSST--TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEeCCCCEEEEEEecCC--CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999999999998532  11122111                 123599999999995 77765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.99  E-value=1.7e-08  Score=88.92  Aligned_cols=187  Identities=10%  Similarity=-0.064  Sum_probs=112.0

Q ss_pred             ccceeceEEEeCCCCcEEEEEC---------C-CceEEEeCCCCeEEEEEeecCCc---cccCCcceEEeCCCCEEEEEe
Q 046018           45 ICGRPLGIRFDKKTGDLYIADA---------Y-LGFQVVGPEGGLATQLVTEAAGQ---PLRFTNDLDIDEHKGVIYFTD  111 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~---------~-~gi~~~d~~~~~~~~~~~~~~~~---~~~~~~~i~~d~~g~~l~v~~  111 (310)
                      ....| +++++++...|||++.         . +.|..+|+.+.+...-+..+.+.   ....|..++++|||+++|+++
T Consensus        64 vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan  142 (368)
T 1mda_H           64 GAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL  142 (368)
T ss_dssp             ECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred             CCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEc
Confidence            33567 8999996668999983         1 23999999998765443322111   124799999999999899997


Q ss_pred             CC--Cc-----hhhhh-hhhh--------------hhcCCCCceEEEEeCCC----------------------------
Q 046018          112 SS--TS-----FQRRQ-FMSS--------------ILSGDKTGRLLKYEKTT----------------------------  141 (310)
Q Consensus       112 ~~--~~-----~~~~~-~~~~--------------~~~~~~~g~v~~~d~~~----------------------------  141 (310)
                      ..  ..     +.... ....              ......++.+..++.++                            
T Consensus       143 ~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~  222 (368)
T 1mda_H          143 FGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             CSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             cCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccC
Confidence            43  11     11100 0000              00011222333333332                            


Q ss_pred             ------------------CeEEEEec----------CCcccce---EEEecCCCeEEEEec---C-----CceEEEEEcc
Q 046018          142 ------------------KEVTILLQ----------GLAFANG---VALSRDRTFILIAET---S-----NCRILRFWLH  182 (310)
Q Consensus       142 ------------------~~~~~~~~----------~~~~~~g---i~~~~d~~~lyv~~~---~-----~~~i~~~~~~  182 (310)
                                        +..+....          ....|.|   +++++|++++|++..   .     .+.+.++|..
T Consensus       223 ~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~  302 (368)
T 1mda_H          223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             TEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             CEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC
Confidence                              11111110          1112445   899999999999855   3     3567799977


Q ss_pred             CCCCCcceeeee--CCCCCCeeEECCCCC-EEEEEe-cCCccceeeeeeccccccEEeeccch
Q 046018          183 GPNSGKQDVFAE--LPGFPDNVRSNSNGE-FWVALH-AKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       183 ~~~~~~~~~~~~--~~~~p~~i~~d~~G~-l~va~~-~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      ..     +.+..  .+..|.+|++++||+ +|++++ ..+.+    ..++..+++.+..++..
T Consensus       303 t~-----~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V----sVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          303 VG-----QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL----DIYDAASDQDQSSVELD  356 (368)
T ss_dssp             SC-----CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEE----EEEESSSCEEEEECCCC
T ss_pred             CC-----eEEEEEECCCCcceEEECCCCCEEEEEccCCCCeE----EEEECCCCcEEEEEECC
Confidence            43     22222  234699999999996 999998 56653    45556778888877653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.99  E-value=1.4e-07  Score=83.21  Aligned_cols=132  Identities=11%  Similarity=-0.061  Sum_probs=80.2

Q ss_pred             ccccccccCCCCCccccccceeceEEEeCCCCcEEEEEC----------CCceEEEeCCCCeEEEEEeecCCc---cccC
Q 046018           28 TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADA----------YLGFQVVGPEGGLATQLVTEAAGQ---PLRF   94 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~----------~~gi~~~d~~~~~~~~~~~~~~~~---~~~~   94 (310)
                      .+..+|..+.+..........|+ ++++++...||+++.          .+.|.++|..+.+...-+..+.+.   ....
T Consensus        60 ~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~  138 (386)
T 3sjl_D           60 QQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY  138 (386)
T ss_dssp             EEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             EEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCC
Confidence            34455554422111222335575 999995557999974          123899999998764433322111   1347


Q ss_pred             CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC----Ccccce----EEEecCCCeE
Q 046018           95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG----LAFANG----VALSRDRTFI  166 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----~~~~~g----i~~~~d~~~l  166 (310)
                      |..++++|||+++|+++..                ..+.|..+|.++++...-...    ...|.|    +++++||+.+
T Consensus       139 P~~~a~spDGk~lyVan~~----------------~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~  202 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA  202 (386)
T ss_dssp             GGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEE
T ss_pred             CceEEEcCCCCEEEEEEcC----------------CCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEE
Confidence            9999999999999999742                256788888888766432211    112434    3777777766


Q ss_pred             EEEecCCceE
Q 046018          167 LIAETSNCRI  176 (310)
Q Consensus       167 yv~~~~~~~i  176 (310)
                      |++....+.+
T Consensus       203 ~v~~~~~g~v  212 (386)
T 3sjl_D          203 KVAFGTEGTP  212 (386)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCCeE
Confidence            6654333454

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.96  E-value=2.4e-07  Score=80.95  Aligned_cols=149  Identities=8%  Similarity=0.024  Sum_probs=94.4

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +|+..++.... -|..+|.++++.......    ....++.+++.+++..++++...            
T Consensus       128 ~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~----h~~~V~~~~~~~~~~~~l~s~s~------------  190 (344)
T 4gqb_B          128 DIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRA----HAAQVTCVAASPHKDSVFLSCSE------------  190 (344)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECSSCTTEEEEEET------------
T ss_pred             CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcC----cCCceEEEEecCCCCCceeeecc------------
Confidence            4566899999 77665555544 488889998875433221    12356789999988536665432            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec---CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ---GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~---~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                           ++.|..||..+++......   .......++++|++..++++...++.|.+||...++.  ...+..-......+
T Consensus       191 -----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~~h~~~v~~v  263 (344)
T 4gqb_B          191 -----DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSAVHSQCVTGL  263 (344)
T ss_dssp             -----TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C--CEEEECCSSCEEEE
T ss_pred             -----ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE--EEEEcCCCCCEEEE
Confidence                 7789999988776443221   1223578999997666777767789999999874321  12222222334678


Q ss_pred             EECCCC-CEEEEEecCCc
Q 046018          203 RSNSNG-EFWVALHAKKG  219 (310)
Q Consensus       203 ~~d~~G-~l~va~~~~~~  219 (310)
                      ++.++| ++.++....+.
T Consensus       264 ~fsp~g~~~lasgs~D~~  281 (344)
T 4gqb_B          264 VFSPHSVPFLASLSEDCS  281 (344)
T ss_dssp             EECSSSSCCEEEEETTSC
T ss_pred             EEccCCCeEEEEEeCCCe
Confidence            999998 45555544444

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.95  E-value=1.1e-06  Score=74.91  Aligned_cols=161  Identities=11%  Similarity=0.090  Sum_probs=100.9

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++++++... +.|..+|.++++.......    ....+..++++|+++ ++++..             
T Consensus        66 ~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~-~l~s~~-------------  126 (312)
T 4ery_A           66 LGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG----HSNYVFCCNFNPQSN-LIVSGS-------------  126 (312)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSS-EEEEEE-------------
T ss_pred             CceEEEEEcC-CCCEEEEECCCCEEEEEECCCCcEEEEEcC----CCCCEEEEEEcCCCC-EEEEEe-------------
Confidence            4566899999 6665555444 4488889887765433322    112467889999999 555442             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~  203 (310)
                          .++.|..||..+++....... ......++++|+++.++ +...++.|..||...+..  ...+.. .......++
T Consensus       127 ----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~  199 (312)
T 4ery_A          127 ----FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVK  199 (312)
T ss_dssp             ----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTCCE--EEEECCSSCCCEEEEE
T ss_pred             ----CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCce--eeEEeccCCCceEEEE
Confidence                277899999987765443332 33457899999998554 446778999999864311  111211 112235689


Q ss_pred             ECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018          204 SNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL  238 (310)
Q Consensus       204 ~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~  238 (310)
                      ++++|++.++....+.     +..++ ..++.+..+
T Consensus       200 ~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          200 FSPNGKYILAATLDNT-----LKLWDYSKGKCLKTY  230 (312)
T ss_dssp             ECTTSSEEEEEETTTE-----EEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEcCCCe-----EEEEECCCCcEEEEE
Confidence            9999987777666554     34433 445554444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.94  E-value=8.2e-08  Score=86.10  Aligned_cols=146  Identities=12%  Similarity=0.070  Sum_probs=95.6

Q ss_pred             ceeceEEEeCCCCc-EEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      .....+++++ +|+ |+++....   .|+.+|.++++...+...     ......++++|+|++|+++...         
T Consensus       223 ~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdg~~l~~~s~~---------  287 (415)
T 2hqs_A          223 RHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-----RSNNTEPTWFPDSQNLAFTSDQ---------  287 (415)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCC-----SSCEEEEEECTTSSEEEEEECT---------
T ss_pred             CcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCC-----CCcccceEECCCCCEEEEEECC---------
Confidence            4456899999 666 55454432   389999988876544221     1245678999999977776532         


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPD  200 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~  200 (310)
                            .....|+.+|.++++.+.+.........++++|||+.|+++...  ...|++++.+++.   ...+... ....
T Consensus       288 ------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~-~~~~  357 (415)
T 2hqs_A          288 ------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSST-FLDE  357 (415)
T ss_dssp             ------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCS-SSCE
T ss_pred             ------CCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---EEEecCC-CCcC
Confidence                  12347999999887766544333445689999999988877554  3589999987542   2222221 2456


Q ss_pred             eeEECCCCCE-EEEEecC
Q 046018          201 NVRSNSNGEF-WVALHAK  217 (310)
Q Consensus       201 ~i~~d~~G~l-~va~~~~  217 (310)
                      .++++++|+. +++...+
T Consensus       358 ~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          358 TPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             EEEECTTSSEEEEEEEET
T ss_pred             CeEEcCCCCEEEEEEcCC
Confidence            7899999974 4444443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.94  E-value=3.5e-08  Score=89.50  Aligned_cols=109  Identities=19%  Similarity=0.276  Sum_probs=76.4

Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe---c------CCcccceEEEecC
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL---Q------GLAFANGVALSRD  162 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---~------~~~~~~gi~~~~d  162 (310)
                      +..|.+|+++|+|+ |||++..                 .++|++++..+++.+.+.   .      ....+.||+++||
T Consensus        26 l~~P~~~a~~pdG~-l~V~e~~-----------------gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           26 LNKPHALLWGPDNQ-IWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             CSSEEEEEECTTSC-EEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEcCCCc-EEEEEcC-----------------CCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            45799999999999 9999842                 347999987666665433   1      1233459999997


Q ss_pred             ---CCeEEEEecC------------CceEEEEEccCC--CCCccee-eeeCC----CCCCeeEECCCCCEEEEEecCC
Q 046018          163 ---RTFILIAETS------------NCRILRFWLHGP--NSGKQDV-FAELP----GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       163 ---~~~lyv~~~~------------~~~i~~~~~~~~--~~~~~~~-~~~~~----~~p~~i~~d~~G~l~va~~~~~  218 (310)
                         ++.||++.+.            ..+|++++.+..  .....+. +...+    ..+.+|++++||.|||+.....
T Consensus        88 f~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~  165 (454)
T 1cru_A           88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG  165 (454)
T ss_dssp             TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred             cCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCC
Confidence               7779999864            468999987642  1222222 32233    2467899999999999987654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.93  E-value=2.9e-08  Score=85.90  Aligned_cols=77  Identities=13%  Similarity=0.006  Sum_probs=49.2

Q ss_pred             ccceEEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeec-c
Q 046018          153 FANGVALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLN-S  229 (310)
Q Consensus       153 ~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~-~  229 (310)
                      .+.+++++| |++.+|++   .+.|++||+.+++   .......+..|.+++++++|+ ||++ ...+.     +..+ .
T Consensus       256 ~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~-----v~v~d~  323 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRK---LIKAANLDHTYYCVAFDKKGDKLYLG-GTFND-----LAVFNP  323 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE---ESEEEEEETTTTE---EEEEEECSSCCCEEEECSSSSCEEEE-SBSSE-----EEEEET
T ss_pred             cceeeEecCCCCCEEEEE---cCeEEEEECccCe---EEEEEcCCCCccceEECCCCCEEEEe-cCCCe-----EEEEec
Confidence            456788889 99988887   6799999987431   111122345688999999984 7764 33333     3333 3


Q ss_pred             ccccEEeeccch
Q 046018          230 WLGKTLLKLPLS  241 (310)
Q Consensus       230 ~~g~~~~~~~~~  241 (310)
                      ..++.+..++.+
T Consensus       324 ~~~~~~~~~~~~  335 (349)
T 1jmx_B          324 DTLEKVKNIKLP  335 (349)
T ss_dssp             TTTEEEEEEECS
T ss_pred             cccceeeeeecC
Confidence            455666665544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.92  E-value=1.5e-07  Score=78.99  Aligned_cols=147  Identities=10%  Similarity=0.023  Sum_probs=93.6

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCC-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEG-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ +|+.++......|+.+|.++ ++...+..   ......+.+++++|+|++|+++...            
T Consensus        42 ~~v~~~~~sp-dg~~l~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~------------  105 (297)
T 2ojh_A           42 ELFEAPNWSP-DGKYLLLNSEGLLYRLSLAGDPSPEKVDT---GFATICNNDHGISPDGALYAISDKV------------  105 (297)
T ss_dssp             SCCEEEEECT-TSSEEEEEETTEEEEEESSSCCSCEECCC---TTCCCBCSCCEECTTSSEEEEEECT------------
T ss_pred             cceEeeEECC-CCCEEEEEcCCeEEEEeCCCCCCceEecc---ccccccccceEECCCCCEEEEEEeC------------
Confidence            4566899999 77755555555699999988 76554432   1122357889999999966665522            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCce--EEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCR--ILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                        ......|+.++.+++..+.+.. ......++++||++.|+++....+.  |+.++..++   ....+...+..+..++
T Consensus       106 --~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~  179 (297)
T 2ojh_A          106 --EFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPD  179 (297)
T ss_dssp             --TTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEE
T ss_pred             --CCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccce
Confidence              1125679999987776554432 3346788999999988766555564  444444432   2222222334457789


Q ss_pred             ECCCCC-EEEEEe
Q 046018          204 SNSNGE-FWVALH  215 (310)
Q Consensus       204 ~d~~G~-l~va~~  215 (310)
                      ++++|+ |+++..
T Consensus       180 ~s~dg~~l~~~~~  192 (297)
T 2ojh_A          180 YSPDGRWIYFNSS  192 (297)
T ss_dssp             ECTTSSEEEEEEC
T ss_pred             ECCCCCEEEEEec
Confidence            999997 444443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.92  E-value=5.6e-07  Score=83.82  Aligned_cols=184  Identities=9%  Similarity=0.054  Sum_probs=111.2

Q ss_pred             EeCCCCC-eEEEEEecccccccc--CCCCCccccccceeceEEEe----CCCCcEEEEECCC-ceEEEeCCCCeEEEEEe
Q 046018           14 WQGDELG-WTEFAVTTSQRKECV--RPFAPDIEHICGRPLGIRFD----KKTGDLYIADAYL-GFQVVGPEGGLATQLVT   85 (310)
Q Consensus        14 ~~~~~~~-W~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~gl~~d----~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~   85 (310)
                      +.++... ++......+..+|..  +.+..........|.+++++    ++...||++.... .|..+|..+.+....+.
T Consensus       204 ~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~  283 (567)
T 1qks_A          204 LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  283 (567)
T ss_dssp             ECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence            3443333 554444456666663  21111112234678999999    5455789888764 48889988876544332


Q ss_pred             ecC---Cc----cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE--EecCCcccce
Q 046018           86 EAA---GQ----PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI--LLQGLAFANG  156 (310)
Q Consensus        86 ~~~---~~----~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~--~~~~~~~~~g  156 (310)
                      ...   +.    +...+..|+.++++..++++..                 .+|.|+.+|..+.+...  .......+++
T Consensus       284 ~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-----------------~~g~v~~vd~~~~~~~~v~~i~~~~~~~d  346 (567)
T 1qks_A          284 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----------------ETGKILLVDYTDLNNLKTTEISAERFLHD  346 (567)
T ss_dssp             CCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred             ccccccccccccCCCceEEEEEcCCCCEEEEEec-----------------CCCeEEEEecCCCccceeeeeeccccccC
Confidence            110   00    0113456788888774555542                 37889999986543211  1233456889


Q ss_pred             EEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC-CCCC---CeeE-ECCC-CCEEEEEecC
Q 046018          157 VALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-PGFP---DNVR-SNSN-GEFWVALHAK  217 (310)
Q Consensus       157 i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~p---~~i~-~d~~-G~l~va~~~~  217 (310)
                      +.|+||++++|+++..+++|.++|...++.   ...... ...|   .++. ++++ |.+|++..-+
T Consensus       347 ~~~~pdgr~~~va~~~sn~V~ViD~~t~kl---~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          347 GGLDGSHRYFITAANARNKLVVIDTKEGKL---VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG  410 (567)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEETTTTEE---EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS
T ss_pred             ceECCCCCEEEEEeCCCCeEEEEECCCCcE---EEEEeccCcCCCCccceeeECCCCCcEEEeCCCC
Confidence            999999999999998999999999875422   111122 2223   3443 5776 6899877644

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.91  E-value=4.3e-07  Score=81.40  Aligned_cols=144  Identities=10%  Similarity=0.105  Sum_probs=95.2

Q ss_pred             ceeceEEEeCCCCc-EEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      .....+++++ +|+ |..+....   .|+.+|.++++...+... .    ..+..++++|+|++|+++...         
T Consensus       179 ~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~----~~~~~~~~spdg~~la~~~~~---------  243 (415)
T 2hqs_A          179 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSPDGSKLAFALSK---------  243 (415)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECTTSSEEEEEECT---------
T ss_pred             CcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-C----CcccCEEEcCCCCEEEEEEec---------
Confidence            4566899999 665 55554443   488999998876544321 1    246789999999967756532         


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPD  200 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~  200 (310)
                            .....|+.||.++++...+.........++|+||++.|+++....  ..|++++.+++.   ...+........
T Consensus       244 ------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~  314 (415)
T 2hqs_A          244 ------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQ  314 (415)
T ss_dssp             ------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEE
T ss_pred             ------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---EEEEecCCCccc
Confidence                  124569999998887766554444567899999999887765433  389999987542   222221223345


Q ss_pred             eeEECCCCCEEEEE
Q 046018          201 NVRSNSNGEFWVAL  214 (310)
Q Consensus       201 ~i~~d~~G~l~va~  214 (310)
                      .++++++|+..+..
T Consensus       315 ~~~~spdG~~l~~~  328 (415)
T 2hqs_A          315 DADVSSDGKFMVMV  328 (415)
T ss_dssp             EEEECTTSSEEEEE
T ss_pred             CeEECCCCCEEEEE
Confidence            68999999754443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.91  E-value=3.6e-07  Score=79.78  Aligned_cols=166  Identities=10%  Similarity=0.043  Sum_probs=101.6

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ....+++.+ ++.|..+...+.|..+|.++++...........-...++.|+++|+|+ ..++..               
T Consensus        84 ~v~~~~~s~-d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs---------------  146 (344)
T 4gqb_B           84 GVADLTWVG-ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGS---------------  146 (344)
T ss_dssp             CEEEEEEET-TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEE---------------
T ss_pred             CEEEEEEeC-CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEe---------------
Confidence            356789998 788887766655777888776532221110000112578899999999 554442               


Q ss_pred             CCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eC-CCCCCeeEE
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-EL-PGFPDNVRS  204 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~-~~~p~~i~~  204 (310)
                        .++.|..||..+++....... ......+++++++..++++.+.++.|.+||...++.  ...+. .. ...+..+++
T Consensus       147 --~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~  222 (344)
T 4gqb_B          147 --KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAW  222 (344)
T ss_dssp             --TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEE
T ss_pred             --CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeee
Confidence              277899999998876554433 334578999999876777777889999999874321  11121 11 123456788


Q ss_pred             CCC-CCEEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018          205 NSN-GEFWVALHAKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       205 d~~-G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      .++ ++++++....+.     |..++ ..++.+..+.
T Consensus       223 ~p~~~~~l~sg~~dg~-----v~~wd~~~~~~~~~~~  254 (344)
T 4gqb_B          223 HPQQSEVFVFGDENGT-----VSLVDTKSTSCVLSSA  254 (344)
T ss_dssp             CSSCTTEEEEEETTSE-----EEEEESCC--CCEEEE
T ss_pred             cCCCCcceEEeccCCc-----EEEEECCCCcEEEEEc
Confidence            875 467666555554     33333 3455444443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.90  E-value=3.3e-07  Score=81.74  Aligned_cols=186  Identities=10%  Similarity=0.041  Sum_probs=115.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~  119 (310)
                      ..|+++...+ +| |||+..+.       +|..+|.++.++....... ..+...+.++-+.|+++.+++++.+. +...
T Consensus       138 s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~-~~~~~~~Yd~~~~p~~~~mvsS~wg~-p~~~  213 (462)
T 2ece_A          138 SRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEID-RGDQYLAYDFWWNLPNEVLVSSEWAV-PNTI  213 (462)
T ss_dssp             EEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSB-CTTCCCCCCEEEETTTTEEEECBCCC-HHHH
T ss_pred             CcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccC-CCCccccceEEECCCCCEEEEccCcC-cccc
Confidence            4899999999 77 99987653       5999999988764433321 12334567899999999555554221 0000


Q ss_pred             --hhhhhhhcCCCCceEEEEeCCCCeEEEEecC---CcccceEEE--ecCCCeEEEEec-----CCceEEEEEccCCCCC
Q 046018          120 --QFMSSILSGDKTGRLLKYEKTTKEVTILLQG---LAFANGVAL--SRDRTFILIAET-----SNCRILRFWLHGPNSG  187 (310)
Q Consensus       120 --~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~--~~d~~~lyv~~~-----~~~~i~~~~~~~~~~~  187 (310)
                        .+....+......+|..||.++++.......   ...|.+|.+  +|+++++|++..     .++.|++|..+++...
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~  293 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN  293 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred             ccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence              0111111112467899999987765432222   245778877  999999999988     8889988776643111


Q ss_pred             cceee--e------eC----------CCCCCeeEECCCCC-EEEEEecCCccceeeeeecc----ccccEEeeccch
Q 046018          188 KQDVF--A------EL----------PGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNS----WLGKTLLKLPLS  241 (310)
Q Consensus       188 ~~~~~--~------~~----------~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~----~~g~~~~~~~~~  241 (310)
                      ..+.+  .      .+          +..|..|.+++||+ |||+++..+.     |..+.    ...+++..+++.
T Consensus       294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~-----VavfdV~d~~~~~lv~~I~tG  365 (462)
T 2ece_A          294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE-----VRQYDISNPFKPVLTGKVKLG  365 (462)
T ss_dssp             EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE-----EEEEECSSTTSCEEEEEEECB
T ss_pred             EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE-----EEEEEecCCCCcEEEEEEEeC
Confidence            11111  0      01          24678999999995 8888877665     33332    234556666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.89  E-value=1.5e-07  Score=78.08  Aligned_cols=148  Identities=13%  Similarity=0.090  Sum_probs=98.3

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETS  172 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~  172 (310)
                      +..+|.++. ++ ||+++..                 .|.|.++|+++++..... ....+..|+++  ++++||++...
T Consensus        56 ftqGL~~~~-~~-Ly~stG~-----------------~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~--~g~~Ly~ltw~  114 (268)
T 3nok_A           56 FTQGLVFHQ-GH-FFESTGH-----------------QGTLRQLSLESAQPVWMERLGNIFAEGLAS--DGERLYQLTWT  114 (268)
T ss_dssp             CEEEEEEET-TE-EEEEETT-----------------TTEEEECCSSCSSCSEEEECTTCCEEEEEE--CSSCEEEEESS
T ss_pred             ccceEEEEC-CE-EEEEcCC-----------------CCEEEEEECCCCcEEeEECCCCcceeEEEE--eCCEEEEEEcc
Confidence            456888873 44 9999854                 567999999998764432 22223355655  55679999888


Q ss_pred             CceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhccccc
Q 046018          173 NCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLV  250 (310)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~  250 (310)
                      ++.+++||+++.     +....  .++.+.+++.|. +.||+++ ....                               
T Consensus       115 ~~~v~V~D~~Tl-----~~~~ti~~~~eGwGLt~Dg-~~L~vSd-Gs~~-------------------------------  156 (268)
T 3nok_A          115 EGLLFTWSGMPP-----QRERTTRYSGEGWGLCYWN-GKLVRSD-GGTM-------------------------------  156 (268)
T ss_dssp             SCEEEEEETTTT-----EEEEEEECSSCCCCEEEET-TEEEEEC-SSSE-------------------------------
T ss_pred             CCEEEEEECCcC-----cEEEEEeCCCceeEEecCC-CEEEEEC-CCCE-------------------------------
Confidence            999999998742     22222  234457787763 5788886 3332                               


Q ss_pred             CCCCceEEEEECCC-CCEEEEEEc-CCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          251 GGKPHATAIKLSEK-GEVLEVLED-CEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       251 ~~~~~~~~~~~d~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                             +..+|+. .+++..+.- .++.++..++.+...+|+||+..+.++.|.++|.
T Consensus       157 -------l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          157 -------LTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             -------EEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECT
T ss_pred             -------EEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeC
Confidence                   2345654 345544432 2455555666666678999999999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.87  E-value=5.1e-06  Score=71.91  Aligned_cols=167  Identities=10%  Similarity=0.078  Sum_probs=98.8

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++++++... +.|..+|.++++.......     ...+..++++++++.++++....           
T Consensus        75 ~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~-----------  137 (369)
T 3zwl_B           75 GTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWKS-----PVPVKRVEFSPCGNYFLAILDNV-----------  137 (369)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSSEEEEEECCB-----------
T ss_pred             CcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeec-----CCCeEEEEEccCCCEEEEecCCc-----------
Confidence            4567899998 6665554444 4488889888775443331     12477899999999555554210           


Q ss_pred             hcCCCCceEEEEeCCCCeE----E--------EEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCccee
Q 046018          126 LSGDKTGRLLKYEKTTKEV----T--------ILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDV  191 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~----~--------~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~  191 (310)
                        ....+.|..||..++..    .        .+...  ......++++|+++.|+++ ..++.|.+||..... .....
T Consensus       138 --~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~-~~~~~  213 (369)
T 3zwl_B          138 --MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-HKDGKISKYDVSNNY-EYVDS  213 (369)
T ss_dssp             --TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-ETTSEEEEEETTTTT-EEEEE
T ss_pred             --cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-cCCCEEEEEECCCCc-EeEEE
Confidence              01136777777543311    1        11111  1156789999999966655 567899999987421 11112


Q ss_pred             eeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccccEEeecc
Q 046018          192 FAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKLP  239 (310)
Q Consensus       192 ~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~  239 (310)
                      +.........++++++|++.++....+.     +..+ ...++.+..+.
T Consensus       214 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          214 IDLHEKSISDMQFSPDLTYFITSSRDTN-----SFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSE-----EEEEETTTCCEEEEEE
T ss_pred             EecCCCceeEEEECCCCCEEEEecCCce-----EEEEECCCCceeeeec
Confidence            2222234577899999987776665554     3333 34555554443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.87  E-value=9.9e-07  Score=79.31  Aligned_cols=177  Identities=12%  Similarity=0.045  Sum_probs=106.8

Q ss_pred             EEEEeccccccccCCCCCccc---cccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcce
Q 046018           23 EFAVTTSQRKECVRPFAPDIE---HICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDL   98 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i   98 (310)
                      +...+.+..||..........   ........|+++|.+++++++....+ |..+|.+++....+...  .........+
T Consensus       138 Gs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~  215 (435)
T 4e54_B          138 GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS--DTINIWFCSL  215 (435)
T ss_dssp             EETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC--SSCSCCCCCE
T ss_pred             EeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc--CCCCccEEEE
Confidence            333445555665442212221   12245678999975666666655555 77889988766544332  1122245789


Q ss_pred             EEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEE
Q 046018           99 DIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR  178 (310)
Q Consensus        99 ~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~  178 (310)
                      +++++++ ++++..                 .+|.|..||.+++....+.........++++|++..++++...++.|.+
T Consensus       216 ~~~~~~~-~l~~g~-----------------~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~i  277 (435)
T 4e54_B          216 DVSASSR-MVVTGD-----------------NVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI  277 (435)
T ss_dssp             EEETTTT-EEEEEC-----------------SSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCE
T ss_pred             EECCCCC-EEEEEe-----------------CCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeE
Confidence            9999999 555543                 3788999998765443332223345789999998877777677889999


Q ss_pred             EEccCCCCC-cceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          179 FWLHGPNSG-KQDVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       179 ~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ||+...... .......-......++++++|++.++....+.
T Consensus       278 wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~  319 (435)
T 4e54_B          278 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE  319 (435)
T ss_dssp             EETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred             EecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence            998743211 11111111122356788999987776665554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.85  E-value=4.5e-06  Score=73.31  Aligned_cols=153  Identities=10%  Similarity=0.068  Sum_probs=98.4

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++.++. |+.+...+.|..+|.++.....+... . .....+..++++|+++.++.+.              
T Consensus       119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~--------------  182 (383)
T 3ei3_B          119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKT-D-SWDYWYCCVDVSVSRQMLATGD--------------  182 (383)
T ss_dssp             CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECC-C-CSSCCEEEEEEETTTTEEEEEE--------------
T ss_pred             CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEecc-C-CCCCCeEEEEECCCCCEEEEEC--------------
Confidence            56678999883334 44444444588889987655444321 1 1123477899999999444443              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCC-CcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNS-GKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~p~~i~~  204 (310)
                          .++.|..||........+.........++++|+++.++++...++.|.+||...... ...............+++
T Consensus       183 ----~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  258 (383)
T 3ei3_B          183 ----STGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYF  258 (383)
T ss_dssp             ----TTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEE
T ss_pred             ----CCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEE
Confidence                378899999965555555444455789999999985555557788999999874221 111111122345578999


Q ss_pred             CC-CCCEEEEEecCCc
Q 046018          205 NS-NGEFWVALHAKKG  219 (310)
Q Consensus       205 d~-~G~l~va~~~~~~  219 (310)
                      ++ +|++.++....+.
T Consensus       259 s~~~~~~l~~~~~d~~  274 (383)
T 3ei3_B          259 NPTDSTKLLTTDQRNE  274 (383)
T ss_dssp             CTTTSCEEEEEESSSE
T ss_pred             cCCCCCEEEEEcCCCc
Confidence            99 9987776665554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.83  E-value=3.5e-06  Score=73.29  Aligned_cols=167  Identities=8%  Similarity=-0.021  Sum_probs=99.6

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ +++++++... +.|..+|.++++........  .....+..+++++++++++++.              
T Consensus        53 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~--------------  115 (372)
T 1k8k_C           53 GQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGS--------------  115 (372)
T ss_dssp             SCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEE--------------
T ss_pred             CcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEee--cCCCceeEEEECCCCCEEEEEe--------------
Confidence            4567899999 6665554444 45888888777644332221  1123577899999999555554              


Q ss_pred             hcCCCCceEEEEeCCCCe----EEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCC-------------CC
Q 046018          126 LSGDKTGRLLKYEKTTKE----VTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPN-------------SG  187 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~----~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~-------------~~  187 (310)
                          .++.|..||.+++.    ....... ......++++|+++.++. ...++.|..||.....             ..
T Consensus       116 ----~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (372)
T 1k8k_C          116 ----GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMP  190 (372)
T ss_dssp             ----TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred             ----CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE-EcCCCCEEEEEcccccccccccccccccccc
Confidence                25667777765543    2222222 344679999999985554 4667899999964210             00


Q ss_pred             cceeeeeC---CCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccc
Q 046018          188 KQDVFAEL---PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPL  240 (310)
Q Consensus       188 ~~~~~~~~---~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~  240 (310)
                      ........   ......++++++|++.++....+.     +..++ ..++.+..+..
T Consensus       191 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          191 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-----VCLADADKKMAVATLAS  242 (372)
T ss_dssp             TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-----EEEEEGGGTTEEEEEEC
T ss_pred             hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-----EEEEECCCCceeEEEcc
Confidence            11222222   234567899999987776665554     44443 45666555543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.83  E-value=8.7e-06  Score=70.53  Aligned_cols=148  Identities=8%  Similarity=0.046  Sum_probs=92.6

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCe--EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGL--ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~--~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....+++++ ++++.++....+ |..++..+..  ....... .+ ....+..+++.+++. ++.+.            
T Consensus        98 ~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~-l~s~s------------  161 (340)
T 1got_B           98 SWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSREL-AG-HTGYLSCCRFLDDNQ-IVTSS------------  161 (340)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEE-EC-CSSCEEEEEEEETTE-EEEEE------------
T ss_pred             ccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEe-cC-CCccEEEEEECCCCc-EEEEE------------
Confidence            3456788999 666555544444 6777776542  1111111 11 112456677888876 66554            


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                            .++.|..||..+++....... ......++++|+++ ++++...++.|..||...+.  ....+.........+
T Consensus       162 ------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v  232 (340)
T 1got_B          162 ------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFTGHESDINAI  232 (340)
T ss_dssp             ------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEE
T ss_pred             ------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEE
Confidence                  377899999988876544333 33467899999998 55566778999999986431  112222222345678


Q ss_pred             EECCCCCEEEEEecCCc
Q 046018          203 RSNSNGEFWVALHAKKG  219 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~  219 (310)
                      +++++|+++++....+.
T Consensus       233 ~~~p~~~~l~s~s~d~~  249 (340)
T 1got_B          233 CFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EECTTSSEEEEEETTSC
T ss_pred             EEcCCCCEEEEEcCCCc
Confidence            99999998877766665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.81  E-value=1.5e-07  Score=82.82  Aligned_cols=138  Identities=10%  Similarity=0.026  Sum_probs=84.4

Q ss_pred             cEEEEECCCceEEEeCCCCeEEEEEee--cC------CccccCCcceEEeCCCCEEEEEeCCC--chhhhhhhhhhhcCC
Q 046018           60 DLYIADAYLGFQVVGPEGGLATQLVTE--AA------GQPLRFTNDLDIDEHKGVIYFTDSST--SFQRRQFMSSILSGD  129 (310)
Q Consensus        60 ~l~v~~~~~gi~~~d~~~~~~~~~~~~--~~------~~~~~~~~~i~~d~~g~~l~v~~~~~--~~~~~~~~~~~~~~~  129 (310)
                      .+|+....+.|+.+|..+.....+...  ..      +.....+..++++++++++|++...+  .+.         ...
T Consensus       213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~---------~~~  283 (361)
T 2oiz_A          213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT---------HKF  283 (361)
T ss_dssp             EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC---------TTC
T ss_pred             EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc---------ccC
Confidence            445554444477777765443222110  00      00012234589999988899986310  000         011


Q ss_pred             CCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC
Q 046018          130 KTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE  209 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  209 (310)
                      ..+.|+.||.++++......... |.+|+++|||++||+++.  +.|.+||..+..+.....+......|.+++++|+|+
T Consensus       284 ~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          284 PAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            24579999999887655444444 999999999999998864  899999977431111122222346799999999985

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.80  E-value=2.3e-06  Score=75.23  Aligned_cols=209  Identities=14%  Similarity=0.098  Sum_probs=115.6

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCcc--ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQP--LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL  135 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (310)
                      ++.||++.....|+.+|+++++..-.... ....  .......+++ ++. +|++.                  ..+.|+
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~-~~~-v~~g~------------------~~g~l~  201 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRGESAPTTA-FGA-AVVGG------------------DNGRVS  201 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC-CC-----CCCCCCEEE-TTE-EEECC------------------TTTEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeC-CCCceeecCCCCcEEE-CCE-EEEEc------------------CCCEEE
Confidence            57899987777799999988875322221 1111  0111223333 565 88875                  267899


Q ss_pred             EEeCCCCeEEEEecCCccc-------------ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          136 KYEKTTKEVTILLQGLAFA-------------NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       136 ~~d~~~~~~~~~~~~~~~~-------------~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                      .+|+++|+........ .|             ...++. + ..+|++ +.++.|+.+|+..++    ..+......+..+
T Consensus       202 ~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~p~~~-~-~~v~~~-~~~g~l~~~d~~tG~----~~w~~~~~~~~~~  273 (376)
T 3q7m_A          202 AVLMEQGQMIWQQRIS-QATGSTEIDRLSDVDTTPVVV-N-GVVFAL-AYNGNLTALDLRSGQ----IMWKRELGSVNDF  273 (376)
T ss_dssp             EEETTTCCEEEEEECC-C-----------CCCCCCEEE-T-TEEEEE-CTTSCEEEEETTTCC----EEEEECCCCEEEE
T ss_pred             EEECCCCcEEEEEecc-cCCCCcccccccccCCCcEEE-C-CEEEEE-ecCcEEEEEECCCCc----EEeeccCCCCCCc
Confidence            9999888765432211 11             111222 3 458887 456899999986432    1222211223445


Q ss_pred             EECCCCCEEEEEecCCccceeeeee-ccccccEEeecc-chhhhhc-------ccccCCCCceEEEEECC-CCCEEEEEE
Q 046018          203 RSNSNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKLP-LSFRQLH-------SLLVGGKPHATAIKLSE-KGEVLEVLE  272 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~d~-~g~~~~~~~  272 (310)
                      .++ ++++|+++..+.      +.. +..+|+.+...+ .+.....       .++++ .....+.++|+ +|+++..+.
T Consensus       274 ~~~-~~~l~~~~~~g~------l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~-~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          274 IVD-GNRIYLVDQNDR------VMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVG-DSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             EEE-TTEEEEEETTCC------EEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred             eEE-CCEEEEEcCCCe------EEEEECCCCcEEEeecccCCCcccCCEEECCEEEEE-eCCCeEEEEECCCCcEEEEEe
Confidence            554 678999987654      444 446787766554 1111111       11222 22335667774 477666554


Q ss_pred             cCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          273 DCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       273 ~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      ...+.   ..+.....+++||+++. +..|+.+++
T Consensus       346 ~~~~~---~~~~~~~~~~~l~v~~~-~G~l~~~~~  376 (376)
T 3q7m_A          346 VDSSG---FQTEPVAADGKLLIQAK-DGTVYSITR  376 (376)
T ss_dssp             CCTTC---BCSCCEEETTEEEEEBT-TSCEEEEEC
T ss_pred             cCCCc---ceeCCEEECCEEEEEeC-CCEEEEEeC
Confidence            42222   12333456899999997 567888763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.79  E-value=7.3e-06  Score=71.24  Aligned_cols=151  Identities=8%  Similarity=-0.067  Sum_probs=95.4

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++++++... +.|..+|.++++...+.... + ....+..++++|++++|+.+.              
T Consensus         9 ~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~~~~--------------   71 (372)
T 1k8k_C            9 EPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELK-E-HNGQVTGVDWAPDSNRIVTCG--------------   71 (372)
T ss_dssp             SCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEE-C-CSSCEEEEEEETTTTEEEEEE--------------
T ss_pred             CCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-C-CCCcccEEEEeCCCCEEEEEc--------------
Confidence            4566899999 7776655544 44888888877532222211 1 122578899999999444443              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCc-ceeeee-CCCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGK-QDVFAE-LPGFPD  200 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~p~  200 (310)
                          .++.|..||.++++.....   ........++++|+++.|+++ ..++.|..|+.+...... ...+.. ......
T Consensus        72 ----~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~  146 (372)
T 1k8k_C           72 ----TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG-SGSRVISICYFEQENDWWVCKHIKKPIRSTVL  146 (372)
T ss_dssp             ----TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEE-ETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             ----CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEE-eCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence                2678999998777644322   223346789999999866655 567899999887542110 111111 123456


Q ss_pred             eeEECCCCCEEEEEecCCc
Q 046018          201 NVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~~  219 (310)
                      .+++.++|+++++....+.
T Consensus       147 ~~~~~~~~~~l~~~~~dg~  165 (372)
T 1k8k_C          147 SLDWHPNSVLLAAGSCDFK  165 (372)
T ss_dssp             EEEECTTSSEEEEEETTSC
T ss_pred             EEEEcCCCCEEEEEcCCCC
Confidence            7899999987777665554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.78  E-value=3.5e-06  Score=74.81  Aligned_cols=224  Identities=14%  Similarity=0.090  Sum_probs=120.5

Q ss_pred             EEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           52 IRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        52 l~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      .++.+ +++++++... +.|..+|.++++.......    ....+.+++++|+++.|+.+.                  .
T Consensus       103 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s------------------~  159 (420)
T 3vl1_A          103 DTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQA----HVSEITKLKFFPSGEALISSS------------------Q  159 (420)
T ss_dssp             EEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTS----SSSCEEEEEECTTSSEEEEEE------------------T
T ss_pred             EEEec-CCCEEEEEECCCCEEEEeCCCcceeeeccc----ccCccEEEEECCCCCEEEEEe------------------C
Confidence            35666 6655554444 4588889988765433211    123578899999999444443                  2


Q ss_pred             CceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--------------
Q 046018          131 TGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--------------  195 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------  195 (310)
                      ++.|..||..+++... +.........++++|+++.|+ +...++.|.+||...+..  ...+...              
T Consensus       160 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~  236 (420)
T 3vl1_A          160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTT--IHTFNRKENPHDGVNSIALFV  236 (420)
T ss_dssp             TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEE-EEETTSCEEEEETTTTEE--EEEECBTTBTTCCEEEEEEEE
T ss_pred             CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEE-EEcCCCcEEEeECCCCce--eEEeecCCCCCCCccEEEEec
Confidence            7789999987765433 332334467899999998555 446778999999874311  1111100              


Q ss_pred             ----------CCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccch-hhhhcccccCCCCceEEEEECC
Q 046018          196 ----------PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLS-FRQLHSLLVGGKPHATAIKLSE  263 (310)
Q Consensus       196 ----------~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~  263 (310)
                                ......++++++|++.++....+.     +..++ ..++....+... ...+.++.+.......++.-..
T Consensus       237 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~  311 (420)
T 3vl1_A          237 GTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-----ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE  311 (420)
T ss_dssp             CCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-----EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCcceeeecccCcccceEEcCCCCEEEEEcCCCe-----EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC
Confidence                      122345778899977776665554     34433 445544443321 1222333333222212222222


Q ss_pred             CCCEEEEEEcCCCCe-e--------cceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          264 KGEVLEVLEDCEGKT-L--------SFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       264 ~g~~~~~~~~~~g~~-~--------~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      +| .+..+....+.. .        ..++.+...++++++....+..|.+++.
T Consensus       312 dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          312 NG-MLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             TS-EEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEE
T ss_pred             CC-eEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEec
Confidence            22 223333222210 0        1234444556766555554666777664

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.78  E-value=1.7e-06  Score=78.02  Aligned_cols=108  Identities=14%  Similarity=0.171  Sum_probs=69.5

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC--CCeEEEEe---cCCcccceEEEecCCCeEEE
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT--TKEVTILL---QGLAFANGVALSRDRTFILI  168 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~~---~~~~~~~gi~~~~d~~~lyv  168 (310)
                      .+.+++++|+|++|+++..                 .++.|..||..  +++.....   .....+..++++|+++.|++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  166 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACAD-----------------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVII  166 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEG-----------------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEEC-----------------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEE
Confidence            4678999999995555542                 26788888876  55443322   22345689999999997776


Q ss_pred             EecCCceEEEEEccCCCCCc--ceeeeeCCCCCCeeEECCC---CCEEEEEecCCc
Q 046018          169 AETSNCRILRFWLHGPNSGK--QDVFAELPGFPDNVRSNSN---GEFWVALHAKKG  219 (310)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~p~~i~~d~~---G~l~va~~~~~~  219 (310)
                      + ...+.|+.|+........  ...+..-......++++++   |++.++....+.
T Consensus       167 ~-~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~  221 (450)
T 2vdu_B          167 A-DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH  221 (450)
T ss_dssp             E-ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC
T ss_pred             E-eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc
Confidence            6 457899999986432211  1122222234567889998   866666655554

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.78  E-value=2.5e-06  Score=74.03  Aligned_cols=146  Identities=10%  Similarity=0.030  Sum_probs=96.5

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ....+.+.+ ++.|..+...+.|..+|.++++.......    ....+..++++|+++ ++++...              
T Consensus       145 ~v~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~sg~~--------------  204 (340)
T 1got_B          145 YLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTR-LFVSGAC--------------  204 (340)
T ss_dssp             CEEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSS-EEEEEET--------------
T ss_pred             cEEEEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcC----CCCceEEEEECCCCC-EEEEEeC--------------
Confidence            445677777 77777776666688889988865433221    112467899999999 6665532              


Q ss_pred             CCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--CCCCCeeEE
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--PGFPDNVRS  204 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~  204 (310)
                         ++.|..||..++........ ......++++|+++. +++...++.|..||.....  ....+...  ......+++
T Consensus       205 ---d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~  278 (340)
T 1got_B          205 ---DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             ---TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEE
T ss_pred             ---CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEE
Confidence               78899999887765543332 344689999999985 4455678899999986431  11111111  112356899


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      +++|++.++....+.
T Consensus       279 s~~g~~l~~g~~d~~  293 (340)
T 1got_B          279 SKSGRLLLAGYDDFN  293 (340)
T ss_dssp             CTTSSEEEEEETTSE
T ss_pred             CCCCCEEEEECCCCe
Confidence            999998887776664

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.76  E-value=1.4e-05  Score=67.98  Aligned_cols=161  Identities=9%  Similarity=0.045  Sum_probs=93.7

Q ss_pred             eeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....+++.+ ++++.++... +.|..+|.++++.......    ....++.++++|+++ ++++.+              
T Consensus        57 ~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~sgs--------------  116 (304)
T 2ynn_A           57 PVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKP-YVLSGS--------------  116 (304)
T ss_dssp             CEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSS-EEEEEE--------------
T ss_pred             cEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEeC----CCCcEEEEEEcCCCC-EEEEEC--------------
Confidence            345678888 5655544444 4588889988765433222    112578899999999 555543              


Q ss_pred             cCCCCceEEEEeCCCC-eEEEEecC-CcccceEEEecC-CCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCee
Q 046018          127 SGDKTGRLLKYEKTTK-EVTILLQG-LAFANGVALSRD-RTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNV  202 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~-~~~~~~~~-~~~~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i  202 (310)
                         .++.|..||..++ ........ ......++++|+ +. ++++...++.|..||......  ...+.. .......+
T Consensus       117 ---~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~~~~v~~~  190 (304)
T 2ynn_A          117 ---DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYV  190 (304)
T ss_dssp             ---TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT-EEEEEETTSEEEEEETTCSSC--SEEEECCCTTCEEEE
T ss_pred             ---CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCc--cceeccCCcCcEEEE
Confidence               2788999998765 33332322 334578999994 55 566667889999999864311  111111 11112334


Q ss_pred             EEC--CCCCEEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018          203 RSN--SNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       203 ~~d--~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      .+.  +++.+.++....+.     +..++ ..++.+..+.
T Consensus       191 ~~~~~~~~~~l~s~s~D~~-----i~iWd~~~~~~~~~~~  225 (304)
T 2ynn_A          191 DYYPLPDKPYMITASDDLT-----IKIWDYQTKSCVATLE  225 (304)
T ss_dssp             EECCSTTCCEEEEEETTSE-----EEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCEEEEEcCCCe-----EEEEeCCCCccceeeC
Confidence            454  36666666655554     34433 3455554443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.76  E-value=2.2e-05  Score=69.26  Aligned_cols=145  Identities=9%  Similarity=0.050  Sum_probs=91.3

Q ss_pred             ceeceEEEeCCCCcEEEEE-CCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIAD-AYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~-~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++++++. ..+.|..+|.++.....+ ..    ....+..++++|++++|+.+.              
T Consensus       109 ~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~l~~~~--------------  168 (425)
T 1r5m_A          109 NQVTCLAWSH-DGNSIVTGVENGELRLWNKTGALLNVL-NF----HRAPIVSVKWNKDGTHIISMD--------------  168 (425)
T ss_dssp             BCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEE-CC----CCSCEEEEEECTTSSEEEEEE--------------
T ss_pred             CceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeec-cC----CCccEEEEEECCCCCEEEEEe--------------
Confidence            3667899999 66554444 444588888655443322 21    123577899999999555554              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCc-c---------------cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcc
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLA-F---------------ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQ  189 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~-~---------------~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~  189 (310)
                          .++.|..||..+++......... .               ...+++++++. +++ ...++.|..|+......  .
T Consensus       169 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~i~~~d~~~~~~--~  240 (425)
T 1r5m_A          169 ----VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVI-PGPKGAIFVYQITEKTP--T  240 (425)
T ss_dssp             ----TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEE-ECGGGCEEEEETTCSSC--S
T ss_pred             ----cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEE-EcCCCeEEEEEcCCCce--e
Confidence                26789999998776654332221 2               67889998864 444 46778999999875321  1


Q ss_pred             eeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          190 DVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       190 ~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ..+.........++++++|+++++....+.
T Consensus       241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  270 (425)
T 1r5m_A          241 GKLIGHHGPISVLEFNDTNKLLLSASDDGT  270 (425)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             eeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence            222222233467899999987776665554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.74  E-value=2.4e-05  Score=67.11  Aligned_cols=162  Identities=11%  Similarity=0.111  Sum_probs=99.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +|+..++.... .|..+|.++++.......    ....+..++++++++ ++++...            
T Consensus        66 ~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~s~s~------------  127 (319)
T 3frx_A           66 HIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVG----HKSDVMSVDIDKKAS-MIISGSR------------  127 (319)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC----CSSCEEEEEECTTSC-EEEEEET------------
T ss_pred             ccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEcc----CCCcEEEEEEcCCCC-EEEEEeC------------
Confidence            3456788998 67655554444 488889988875433221    112467899999999 5555432            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCC-----eEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRT-----FILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPD  200 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~-----~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~  200 (310)
                           ++.|..||..+.....+.........+++.|...     .++++...++.|..||......  ...+..-.....
T Consensus       128 -----D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~  200 (319)
T 3frx_A          128 -----DKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNIN  200 (319)
T ss_dssp             -----TSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE--EEEECCCCSCEE
T ss_pred             -----CCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh--heeecCCCCcEE
Confidence                 7789999987655554443333456778877432     2455667788999999864211  111111123346


Q ss_pred             eeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018          201 NVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL  238 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~  238 (310)
                      .++++++|++.++....+.     +..++ ..++.+..+
T Consensus       201 ~~~~sp~g~~l~s~~~dg~-----i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          201 TLTASPDGTLIASAGKDGE-----IMLWNLAAKKAMYTL  234 (319)
T ss_dssp             EEEECTTSSEEEEEETTCE-----EEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCe-----EEEEECCCCcEEEEe
Confidence            7899999988777766654     44443 445554444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.74  E-value=2.9e-07  Score=86.00  Aligned_cols=144  Identities=9%  Similarity=-0.033  Sum_probs=93.3

Q ss_pred             eEEEeCC-CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           51 GIRFDKK-TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        51 gl~~d~~-~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      .++++++ ++.+|+....+++..+|.++++.+++....      . .+++++|||++|+++...              ..
T Consensus       114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~-~~~~~spDG~~la~~~~~--------------~~  172 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP------G-FGFVSDIRGDLIAGLGFF--------------GG  172 (582)
T ss_dssp             EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES------S-CEEEEEEETTEEEEEEEE--------------ET
T ss_pred             eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC------C-ceEEECCCCCEEEEEEEc--------------CC
Confidence            3455552 234555555566667788888876665431      1 789999999955544421              01


Q ss_pred             CCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCc--eEEEEEccCCCCCcceeeeeCCCCCCeeE----
Q 046018          130 KTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNC--RILRFWLHGPNSGKQDVFAELPGFPDNVR----  203 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~----  203 (310)
                      ....|+.+|.++++.+.+.........++|+|||+.|+.+ ...+  .|+++|.+++..   ..+......+.+++    
T Consensus       173 ~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~-~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGL-ETAREARLVTVDPRDGSV---EDLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             TEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEE-ECSSCEEEEEECTTTCCE---EECCCSCSHHHHHCCSEE
T ss_pred             CCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEc-cCCCeeEEEEEcCCCCcE---EEccCCCcChhhhhhccc
Confidence            1256999999888887765544556889999999988844 3445  899999875422   22222222234455    


Q ss_pred             ----ECCCCCEEEEEecCCc
Q 046018          204 ----SNSNGEFWVALHAKKG  219 (310)
Q Consensus       204 ----~d~~G~l~va~~~~~~  219 (310)
                          +++||.++++....+.
T Consensus       249 ~~~~~spdg~~~~~~~~~g~  268 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGR  268 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTE
T ss_pred             cceeEcCCCcEEEEEEcCCc
Confidence                9999988887776554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.74  E-value=6.1e-06  Score=73.61  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=76.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ ++++.++.... .|..+|.++++......   + ....+..++++|+|+ .+++..             
T Consensus       151 ~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~---~-h~~~V~~v~~~p~~~-~l~s~s-------------  211 (410)
T 1vyh_C          151 DSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMH---G-HDHNVSSVSIMPNGD-HIVSAS-------------  211 (410)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCC---C-CSSCEEEEEECSSSS-EEEEEE-------------
T ss_pred             CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEc---C-CCCCEEEEEEeCCCC-EEEEEe-------------
Confidence            4567899998 67666555544 47788888766432211   1 123577899999999 555443             


Q ss_pred             hcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                          .++.|..||..++.... +.........+++++|++ ++++...++.|.+|+...
T Consensus       212 ----~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          212 ----RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             ----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred             ----CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCC
Confidence                27889999998876543 322233457889999998 555557788999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.7e-06  Score=76.61  Aligned_cols=180  Identities=9%  Similarity=0.017  Sum_probs=107.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCe------EEEEEeecCCccccCCcceEEeCC-CCEEEEEeCCCchhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGL------ATQLVTEAAGQPLRFTNDLDIDEH-KGVIYFTDSSTSFQR  118 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~------~~~~~~~~~~~~~~~~~~i~~d~~-g~~l~v~~~~~~~~~  118 (310)
                      .....+++++++++++++.... .|..+|..+++      ........ ......+..++++++ ++ ++++...     
T Consensus       114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~l~~~~~-----  186 (416)
T 2pm9_A          114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAH-VFASAGS-----  186 (416)
T ss_dssp             SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTT-EEEEESS-----
T ss_pred             cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCc-EEEEEcC-----
Confidence            4566899998426666555554 48888887764      11111110 112235789999999 66 6665432     


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-------CcccceEEEecCCCeEEEEecCCc---eEEEEEccCCCCCc
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-------LAFANGVALSRDRTFILIAETSNC---RILRFWLHGPNSGK  188 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~~~~~gi~~~~d~~~lyv~~~~~~---~i~~~~~~~~~~~~  188 (310)
                                  ++.|..||..+++.......       ......++++|++..++++....+   .|.+||...... .
T Consensus       187 ------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~  253 (416)
T 2pm9_A          187 ------------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-P  253 (416)
T ss_dssp             ------------SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-C
T ss_pred             ------------CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-C
Confidence                        77899999988766544332       344678999999854666556666   999999875311 1


Q ss_pred             ceeee-eCCCCCCeeEECC-CCCEEEEEecCCccceeeeeecc-ccccEEeeccchhhhhcccccC
Q 046018          189 QDVFA-ELPGFPDNVRSNS-NGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLSFRQLHSLLVG  251 (310)
Q Consensus       189 ~~~~~-~~~~~p~~i~~d~-~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~  251 (310)
                      ...+. ........+++++ +|++.++....+.     +..++ ..++.+..+......+..+.+.
T Consensus       254 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-----v~~wd~~~~~~~~~~~~~~~~v~~~~~s  314 (416)
T 2pm9_A          254 LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-----VLLWNPESAEQLSQFPARGNWCFKTKFA  314 (416)
T ss_dssp             SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-----EEEECSSSCCEEEEEECSSSCCCCEEEC
T ss_pred             cEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-----EEEeeCCCCccceeecCCCCceEEEEEC
Confidence            12222 1223456789998 7877776665554     44443 4566665554333333334343

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.73  E-value=3.3e-06  Score=74.88  Aligned_cols=153  Identities=7%  Similarity=-0.017  Sum_probs=100.3

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ ++.++++... +.|..+|.++++.......    ....+..++++|++..++++..+            
T Consensus       218 ~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~ll~~~~g------------  280 (401)
T 4aez_A          218 SEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTN----HNAAVKAVAWCPWQSNLLATGGG------------  280 (401)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECC----CSSCCCEEEECTTSTTEEEEECC------------
T ss_pred             CCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecC----CcceEEEEEECCCCCCEEEEecC------------
Confidence            4567899999 6665554444 4588889987764332221    12357889999987647766431            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEE-ecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIA-ETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                         ..++.|..||..+++.............++++|+++.++++ ...++.|.+|+...+.......+....+....+++
T Consensus       281 ---s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~  357 (401)
T 4aez_A          281 ---TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL  357 (401)
T ss_dssp             ---TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEE
T ss_pred             ---CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEE
Confidence               13788999999887765544445567899999999966665 33678999999875321111111122244678899


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      +++|.+.++....+.
T Consensus       358 s~dg~~l~s~~~dg~  372 (401)
T 4aez_A          358 SPDGRILSTAASDEN  372 (401)
T ss_dssp             CTTSSEEEEECTTSE
T ss_pred             CCCCCEEEEEeCCCc
Confidence            999987776665554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.72  E-value=1.1e-06  Score=84.20  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=67.8

Q ss_pred             eceEEEeCCCCc-EEEEECCCceEEEeCCCC---eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           49 PLGIRFDKKTGD-LYIADAYLGFQVVGPEGG---LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        49 p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~---~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ...+++++ +|+ |+++.. ..|+.+|.+++   ..+.+...     ...+..++++|||++|.++.             
T Consensus       111 v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~-----~~~~~~~~~SPDG~~la~~~-------------  170 (741)
T 2ecf_A          111 IVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG-----EGFATDAKLSPKGGFVSFIR-------------  170 (741)
T ss_dssp             SCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS-----SSCEEEEEECTTSSEEEEEE-------------
T ss_pred             cceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccC-----CcccccccCCCCCCEEEEEe-------------
Confidence            56899999 665 555544 56899999887   54433211     12467899999999666665             


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcc-----------------cceEEEecCCCeEEEEec
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAF-----------------ANGVALSRDRTFILIAET  171 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-----------------~~gi~~~~d~~~lyv~~~  171 (310)
                            .+.|+.||.++++...+......                 +.+++|+|||+.|+++..
T Consensus       171 ------~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          171 ------GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             ------TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             ------CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence                  45799999988877665433221                 477999999998887744

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.71  E-value=2.3e-05  Score=67.68  Aligned_cols=149  Identities=11%  Similarity=0.074  Sum_probs=96.9

Q ss_pred             ceeceEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++++++.. .+.|..+|..+++.......    ....+.++++++++++|+.+.              
T Consensus        33 ~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~~--------------   93 (369)
T 3zwl_B           33 RPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDG----HTGTIWSIDVDCFTKYCVTGS--------------   93 (369)
T ss_dssp             SCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEEEEEE--------------
T ss_pred             ceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhh----cCCcEEEEEEcCCCCEEEEEe--------------
Confidence            5567899999 666555444 44588889887765433221    122567899999999444443              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC-----ceEEEEEccCCCCC-cc--------ee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN-----CRILRFWLHGPNSG-KQ--------DV  191 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~-----~~i~~~~~~~~~~~-~~--------~~  191 (310)
                          .++.|..||..+++.............++++|+++.++++ ..+     +.|..|+....... ..        ..
T Consensus        94 ----~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~  168 (369)
T 3zwl_B           94 ----ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI-LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK  168 (369)
T ss_dssp             ----TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEE-ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred             ----CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEe-cCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence                2788999999887766544445567899999999966665 444     89999998743211 11        11


Q ss_pred             eeeCCC--CCCeeEECCCCCEEEEEecCCc
Q 046018          192 FAELPG--FPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       192 ~~~~~~--~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +....+  ....++++++|++.++....+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  198 (369)
T 3zwl_B          169 IITHEGLDAATVAGWSTKGKYIIAGHKDGK  198 (369)
T ss_dssp             EECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred             ccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence            111111  4567889999987776655554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.71  E-value=5.4e-06  Score=79.04  Aligned_cols=140  Identities=11%  Similarity=0.017  Sum_probs=93.1

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .+..+++++ ++.+.++.. ..|+.+|..+++...+...     ...+.+++++|||++|.++.                
T Consensus        83 ~v~~~~~sp-d~~~~~~~~-~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~SpdG~~la~~~----------------  139 (706)
T 2z3z_A           83 PSFRTLDAG-RGLVVLFTQ-GGLVGFDMLARKVTYLFDT-----NEETASLDFSPVGDRVAYVR----------------  139 (706)
T ss_dssp             CCEEEEETT-TTEEEEEET-TEEEEEETTTTEEEEEECC-----TTCCTTCEECTTSSEEEEEE----------------
T ss_pred             CceeEEECC-CCeEEEEEC-CEEEEEECCCCceEEccCC-----cccccCCcCCCCCCEEEEEE----------------
Confidence            467899999 576666643 5699999998876555322     12467899999999666653                


Q ss_pred             CCCCceEEEEeCCC-----CeEEEEecCCcc---------------cceEEEecCCCeEEEEec----------------
Q 046018          128 GDKTGRLLKYEKTT-----KEVTILLQGLAF---------------ANGVALSRDRTFILIAET----------------  171 (310)
Q Consensus       128 ~~~~g~v~~~d~~~-----~~~~~~~~~~~~---------------~~gi~~~~d~~~lyv~~~----------------  171 (310)
                         .+.|+.|+.++     ++...+......               +.+++|+|||++|+++..                
T Consensus       140 ---~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~  216 (706)
T 2z3z_A          140 ---NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPL  216 (706)
T ss_dssp             ---TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSS
T ss_pred             ---CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence               57899999887     665544332222               478999999998877641                


Q ss_pred             ----------------CCceEEEEEccCCCCCcceeeee---CCCCCCeeEECCCCC-EEEEEec
Q 046018          172 ----------------SNCRILRFWLHGPNSGKQDVFAE---LPGFPDNVRSNSNGE-FWVALHA  216 (310)
Q Consensus       172 ----------------~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~-l~va~~~  216 (310)
                                      ....|+++|.+++.   ...+..   ....+..+++++||+ |+++...
T Consensus       217 ~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  278 (706)
T 2z3z_A          217 EAESKPLYYPMAGTPSHHVTVGIYHLATGK---TVYLQTGEPKEKFLTNLSWSPDENILYVAEVN  278 (706)
T ss_dssp             SCEEEEECCCBTTSCCCEEEEEEEETTTTE---EEECCCCSCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred             CCceEEeeCCCCCCCCCeeEEEEEECCCCc---eEeeccCCCCceeEeeEEEECCCCEEEEEEeC
Confidence                            33679999887542   111111   112345789999997 5555443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.69  E-value=4e-05  Score=67.18  Aligned_cols=184  Identities=10%  Similarity=0.012  Sum_probs=105.5

Q ss_pred             eeceEEEeCCCCc-EEEEECC-Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           48 RPLGIRFDKKTGD-LYIADAY-LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        48 ~p~gl~~d~~~g~-l~v~~~~-~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .+..++++| +|+ |.++... .+ |..+|+++++.......     ...+.+|+++|+|+ +.++..            
T Consensus       135 ~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-----~~~V~~v~fspdg~-~l~s~s------------  195 (365)
T 4h5i_A          135 YTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-----RGEVKDLHFSTDGK-VVAYIT------------  195 (365)
T ss_dssp             CEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-----SSCCCEEEECTTSS-EEEEEC------------
T ss_pred             CEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeCC-----CCceEEEEEccCCc-eEEecc------------
Confidence            355789999 666 4555543 44 77789998875433321     12478999999999 555542            


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEecCCc---eEEEEEccCCCCCcc--eeeeeCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAETSNC---RILRFWLHGPNSGKQ--DVFAELP  196 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~~~~---~i~~~~~~~~~~~~~--~~~~~~~  196 (310)
                            .+.+.+|+..+++.......   ......++++||++.++.+.....   .++.++.........  ..+....
T Consensus       196 ------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  269 (365)
T 4h5i_A          196 ------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF  269 (365)
T ss_dssp             ------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred             ------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCC
Confidence                  44577777666655432211   223568999999986666543322   566666553211100  1111112


Q ss_pred             CCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEE
Q 046018          197 GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVL  271 (310)
Q Consensus       197 ~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~  271 (310)
                      .....++++++|++.++....+.     |..++ .+++.+..+..          +......-++|+|+|+.+..-
T Consensus       270 ~~V~~~~~Spdg~~lasgs~D~~-----V~iwd~~~~~~~~~~~~----------gH~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          270 KGITSMDVDMKGELAVLASNDNS-----IALVKLKDLSMSKIFKQ----------AHSFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSC-----EEEEETTTTEEEEEETT----------SSSSCEEEEEECTTSCEEEEE
T ss_pred             CCeEeEEECCCCCceEEEcCCCE-----EEEEECCCCcEEEEecC----------cccCCEEEEEECCCCCEEEEE
Confidence            23467899999998776666554     44443 45666554311          112223345677777666544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.69  E-value=5.4e-05  Score=66.92  Aligned_cols=145  Identities=12%  Similarity=0.006  Sum_probs=95.0

Q ss_pred             eceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ...+++++ +|+++++... +.|..+|.++++.......    ....+.+++++|+++ ..++..               
T Consensus       126 v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~p~~~-~l~s~s---------------  184 (393)
T 1erj_A          126 IRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQG----HEQDIYSLDYFPSGD-KLVSGS---------------  184 (393)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSS-EEEEEE---------------
T ss_pred             EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcc----CCCCEEEEEEcCCCC-EEEEec---------------
Confidence            56799999 7765555444 4488889988875433321    122467899999999 444442               


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCcccceEEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeeee-------CCCCC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-------LPGFP  199 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~p  199 (310)
                        .++.|..||..+++.............++++| +++ ++++...++.|..||...+..  ...+..       -....
T Consensus       185 --~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          185 --GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSV  259 (393)
T ss_dssp             --TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCE
T ss_pred             --CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCE
Confidence              27889999998887655444444567889999 777 555557788999999874321  111110       11234


Q ss_pred             CeeEECCCCCEEEEEecCCc
Q 046018          200 DNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       200 ~~i~~d~~G~l~va~~~~~~  219 (310)
                      ..++++++|++.++....+.
T Consensus       260 ~~v~~~~~g~~l~s~s~d~~  279 (393)
T 1erj_A          260 YSVVFTRDGQSVVSGSLDRS  279 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSE
T ss_pred             EEEEECCCCCEEEEEeCCCE
Confidence            56899999987777665554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.69  E-value=1e-05  Score=72.10  Aligned_cols=147  Identities=12%  Similarity=0.095  Sum_probs=96.4

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ ++.+.++.... .|..+|..+++.......    ....+.+++++++|+ +.++...            
T Consensus       109 ~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~----h~~~V~~v~~~~~~~-~l~sgs~------------  170 (410)
T 1vyh_C          109 SPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKG----HTDSVQDISFDHSGK-LLASCSA------------  170 (410)
T ss_dssp             SCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECC----CSSCEEEEEECTTSS-EEEEEET------------
T ss_pred             CcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEec----cCCcEEEEEEcCCCC-EEEEEeC------------
Confidence            3456889999 77766665554 488889888765433221    122468899999999 5555432            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                           ++.|..||..+++....... ......++++|+++.| ++.+.++.|..||...+.  ....+.........+.+
T Consensus       171 -----D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l-~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~  242 (410)
T 1vyh_C          171 -----DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRP  242 (410)
T ss_dssp             -----TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEE
T ss_pred             -----CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEE
Confidence                 77888999887655432222 2346789999999854 455778999999987431  11222222223456788


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      +++|++.++....+.
T Consensus       243 ~~~g~~l~s~s~D~~  257 (410)
T 1vyh_C          243 NQDGTLIASCSNDQT  257 (410)
T ss_dssp             CTTSSEEEEEETTSC
T ss_pred             CCCCCEEEEEcCCCe
Confidence            999988777766654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.66  E-value=4e-07  Score=80.13  Aligned_cols=80  Identities=10%  Similarity=-0.124  Sum_probs=60.0

Q ss_pred             eEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec---------CCceEEEEEccCCCCCcceeeeeCC-------
Q 046018          133 RLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET---------SNCRILRFWLHGPNSGKQDVFAELP-------  196 (310)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~-------  196 (310)
                      .|..+|+++++..........| +++++||++++|++++         .++.|.+||+...+.  ...+ ..+       
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I-~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADI-ELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEE-EETTSCSCCB
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEE-ECCCcccccc
Confidence            8999999998776544445568 9999999999999984         368899999875422  1111 111       


Q ss_pred             -CCCCeeEECCCC-CEEEEEec
Q 046018          197 -GFPDNVRSNSNG-EFWVALHA  216 (310)
Q Consensus       197 -~~p~~i~~d~~G-~l~va~~~  216 (310)
                       ..|.++++++|| .+||++..
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~  144 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECS
T ss_pred             CCCcceEEEcCCCCEEEEEccC
Confidence             369999999999 68888765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.66  E-value=7e-06  Score=70.20  Aligned_cols=175  Identities=11%  Similarity=0.163  Sum_probs=107.1

Q ss_pred             EEeCCCCcEEEEE---CC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           53 RFDKKTGDLYIAD---AY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        53 ~~d~~~g~l~v~~---~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      ++.++++.||.++   .. ..|++++.++...+++....    .     .+++++|+.||+++..               
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~----~-----~~~~~~g~~iy~t~~g---------------  165 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY----L-----FTCNTSDRYFYYNNPK---------------  165 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC----C-----CCSEEETTEEEEECTT---------------
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC----c-----eEeeEECCEEEEEeCC---------------
Confidence            4444467899988   22 34999999987766554321    1     3457788889999842               


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC-ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCC
Q 046018          129 DKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN-CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSN  207 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  207 (310)
                        ...|++.+.+++..+++..+   +..+.+.|+++.||+++... ..|++.++++..   ...+.+.. .   ..++++
T Consensus       166 --~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~~~-~---~~~~~~  233 (302)
T 3s25_A          166 --NGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTEAN-I---EHYNVY  233 (302)
T ss_dssp             --TCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSCSC-E---EEEEEE
T ss_pred             --CceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeCCC-c---ceEEEC
Confidence              56799999988777766442   22345779999999997654 489999988642   23332211 1   224444


Q ss_pred             C-CEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEE
Q 046018          208 G-EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVE  286 (310)
Q Consensus       208 G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~  286 (310)
                      | .||.+......                                     .+.+++.+|...+.+....      +..+.
T Consensus       234 g~~Iy~~~~~~~~-------------------------------------~i~~~~~DG~~r~~l~~~~------~~~i~  270 (302)
T 3s25_A          234 GSLIFYQRGGDNP-------------------------------------ALCVVKNDGTGFKELAKGE------FCNIN  270 (302)
T ss_dssp             TTEEEEEECSSSC-------------------------------------EEEEEETTSCCCEEEEESC------EEEEE
T ss_pred             CCEEEEEECCCCc-------------------------------------EEEEEECCCCccEEeeCCc------cceEE
Confidence            5 35444322111                                     2334555554434333211      23455


Q ss_pred             EeCCEEEEecCCCCeEEEec
Q 046018          287 EKDGQLWMGSVLMPFIGIYN  306 (310)
Q Consensus       287 ~~~g~l~vgs~~~~~i~~~~  306 (310)
                      ..++.||+..+....|.+++
T Consensus       271 i~~d~Iy~td~~~~~i~~~~  290 (302)
T 3s25_A          271 VTSQYVYFTDFVSNKEYCTS  290 (302)
T ss_dssp             ECSSEEEEEETTTCCEEEEE
T ss_pred             EeCCEEEEEECCCCeEEEEE
Confidence            67888888888777777765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.66  E-value=3.2e-05  Score=73.68  Aligned_cols=163  Identities=10%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ ++++.++.... .|..+|..++.........    ...+.+++++|+++ ..++.+             
T Consensus       431 ~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h----~~~v~~~~~s~~~~-~l~s~s-------------  491 (694)
T 3dm0_A          431 HFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGH----TKDVLSVAFSLDNR-QIVSAS-------------  491 (694)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECC----SSCEEEEEECTTSS-CEEEEE-------------
T ss_pred             CcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCC----CCCEEEEEEeCCCC-EEEEEe-------------
Confidence            4566789999 77766555544 4888899887654332221    12467899999999 555543             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCC----cccceEEEecCCC-eEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGL----AFANGVALSRDRT-FILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPD  200 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~----~~~~gi~~~~d~~-~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~  200 (310)
                          .++.|..||..+.....+....    .....++++|++. .++++.+.++.|.+||......  ...+..-.+...
T Consensus       492 ----~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~  565 (694)
T 3dm0_A          492 ----RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVS  565 (694)
T ss_dssp             ----TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEE
T ss_pred             ----CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEE
Confidence                2778999998654433332211    2246899999863 3566667889999999874311  111211223456


Q ss_pred             eeEECCCCCEEEEEecCCccceeeeeeccccccEEeec
Q 046018          201 NVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL  238 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~  238 (310)
                      .++++++|++.++....+.+    ...+...++.+..+
T Consensus       566 ~v~~spdg~~l~sg~~Dg~i----~iwd~~~~~~~~~~  599 (694)
T 3dm0_A          566 TVAVSPDGSLCASGGKDGVV----LLWDLAEGKKLYSL  599 (694)
T ss_dssp             EEEECTTSSEEEEEETTSBC----EEEETTTTEEEECC
T ss_pred             EEEEeCCCCEEEEEeCCCeE----EEEECCCCceEEEe
Confidence            78999999988877766653    22333455555444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.66  E-value=4.5e-06  Score=69.72  Aligned_cols=145  Identities=12%  Similarity=0.061  Sum_probs=87.8

Q ss_pred             ceeceEEEeCCCCc-EEEEECC----CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAY----LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~----~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      ..+..+++++ +|+ |+++...    ..|+.++..++..+.+...      ..+..++++|+|++|+++...        
T Consensus        85 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~~~~~~--------  149 (297)
T 2ojh_A           85 ICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN------LPSYWHGWSPDGKSFTYCGIR--------  149 (297)
T ss_dssp             CBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS------SSEEEEEECTTSSEEEEEEEE--------
T ss_pred             ccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCceEEeecC------CCccceEECCCCCEEEEEECC--------
Confidence            4556799999 665 4554422    2488888887765433211      135678999999966655421        


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFP  199 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p  199 (310)
                             ...-.|+.++.+++....+.........++++||++.|+++....  ..|+.++..+.   ....+.......
T Consensus       150 -------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~  219 (297)
T 2ojh_A          150 -------DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGD  219 (297)
T ss_dssp             -------TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CEEECCCCSEEE
T ss_pred             -------CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---CcEEEecCCccc
Confidence                   112367888887777766555455678899999999887765433  45666554432   122222212233


Q ss_pred             CeeEECCCCCEE-EEEec
Q 046018          200 DNVRSNSNGEFW-VALHA  216 (310)
Q Consensus       200 ~~i~~d~~G~l~-va~~~  216 (310)
                      ..++++++|+.. ++...
T Consensus       220 ~~~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          220 WFPHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             EEEEECTTSSEEEEEEEE
T ss_pred             CCeEECCCCCEEEEEEcC
Confidence            568899999744 44433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.65  E-value=3.1e-05  Score=66.38  Aligned_cols=144  Identities=11%  Similarity=0.107  Sum_probs=89.5

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC------CCEEEEEeCCCchhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH------KGVIYFTDSSTSFQRR  119 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~------g~~l~v~~~~~~~~~~  119 (310)
                      .....+++++ ++.++++.... .|..+|.++..+..+...     ...+..+++.|.      +. .+++..       
T Consensus       108 ~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~-~l~s~~-------  173 (319)
T 3frx_A          108 SDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGH-----NDWVSQVRVVPNEKADDDSV-TIISAG-------  173 (319)
T ss_dssp             SCEEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCC-----SSCEEEEEECCC------CC-EEEEEE-------
T ss_pred             CcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEecc-----CCcEEEEEEccCCCCCCCcc-EEEEEe-------
Confidence            4566788998 66655555544 478888886654333211     123456666663      44 333332       


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                                .++.|..||..+.+....... ......++++||++ ++++...++.|.+||...++.  ...+ .....
T Consensus       174 ----------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~--~~~~-~~~~~  239 (319)
T 3frx_A          174 ----------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKA--MYTL-SAQDE  239 (319)
T ss_dssp             ----------TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE--EEEE-ECCSC
T ss_pred             ----------CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcE--EEEe-cCCCc
Confidence                      377899999987766543332 33467899999998 445556778999999874311  1111 12234


Q ss_pred             CCeeEECCCCCEEEEEecCC
Q 046018          199 PDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~  218 (310)
                      ...++++++|.+.++....+
T Consensus       240 v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             EEEEEECSSSSEEEEEETTE
T ss_pred             EEEEEEcCCCCEEEEEcCCC
Confidence            56789999998777665544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.65  E-value=3.7e-06  Score=77.55  Aligned_cols=111  Identities=6%  Similarity=0.007  Sum_probs=74.5

Q ss_pred             CCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEE-e-CCCCEEEEEeCCCc-h-hhhhhhhhhhcCCCCc
Q 046018           58 TGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI-D-EHKGVIYFTDSSTS-F-QRRQFMSSILSGDKTG  132 (310)
Q Consensus        58 ~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~-d-~~g~~l~v~~~~~~-~-~~~~~~~~~~~~~~~g  132 (310)
                      ...|||.+... .|.++|.++.+...+...+.+   ..|.++++ + |+++++|+++.... . .....+. . .....+
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g---~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~-~-~~~~~~  175 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME-D-VANYVN  175 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT-C-GGGEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC---CCCcceeeeecCCCcEEEEecccccccCCCCcccc-c-ccccCc
Confidence            34799998874 599999999987766543222   36889997 5 89998998863210 0 0000000 0 112356


Q ss_pred             eEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018          133 RLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN  173 (310)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~  173 (310)
                      .+..+|.++.+..........|.+++++|||+++|+++..+
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~s  216 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS  216 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred             eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCc
Confidence            78999999876654333333799999999999999998665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.64  E-value=9.8e-06  Score=71.18  Aligned_cols=211  Identities=12%  Similarity=0.110  Sum_probs=111.0

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      ++.||++.....|+.+|+++++..--... ... .  ....++ .++. +|++.                  ..+.|+.+
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~-~--~~~p~~-~~~~-v~v~~------------------~~g~l~~~  158 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKV-AGE-A--LSRPVV-SDGL-VLIHT------------------SNGQLQAL  158 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-SSC-C--CSCCEE-ETTE-EEEEC------------------TTSEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeC-CCc-e--EcCCEE-ECCE-EEEEc------------------CCCeEEEE
Confidence            68999998877899999998875321121 111 1  111223 2565 99876                  26789999


Q ss_pred             eCCCCeEEEEecCCcc------cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC---------CCCee
Q 046018          138 EKTTKEVTILLQGLAF------ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG---------FPDNV  202 (310)
Q Consensus       138 d~~~~~~~~~~~~~~~------~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~p~~i  202 (310)
                      |+++|+..........      ....++. ++ .+|+. +.++.|+.+|+..++...........+         .....
T Consensus       159 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-~v~~g-~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p  235 (376)
T 3q7m_A          159 NEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-AAVVG-GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP  235 (376)
T ss_dssp             ETTTCCEEEEEECCC-----CCCCCCEEE-TT-EEEEC-CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred             ECCCCcEEEEEeCCCCceeecCCCCcEEE-CC-EEEEE-cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence            9988876543221111      1233343 33 47776 566899999986432110000000000         00111


Q ss_pred             EECCCCCEEEEEecCCccceeeeee-ccccccEEeeccchhhh-h----cccccCCCCceEEEEECC-CCCEEEEEEcCC
Q 046018          203 RSNSNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKLPLSFRQ-L----HSLLVGGKPHATAIKLSE-KGEVLEVLEDCE  275 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~d~-~g~~~~~~~~~~  275 (310)
                      .+ .+|.+|++...+.      +.. +..+|+.+...+.+... +    ..++++ .....+.++|+ +|+.+.......
T Consensus       236 ~~-~~~~v~~~~~~g~------l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~-~~~g~l~~~d~~tG~~~w~~~~~~  307 (376)
T 3q7m_A          236 VV-VNGVVFALAYNGN------LTALDLRSGQIMWKRELGSVNDFIVDGNRIYLV-DQNDRVMALTIDGGVTLWTQSDLL  307 (376)
T ss_dssp             EE-ETTEEEEECTTSC------EEEEETTTCCEEEEECCCCEEEEEEETTEEEEE-ETTCCEEEEETTTCCEEEEECTTT
T ss_pred             EE-ECCEEEEEecCcE------EEEEECCCCcEEeeccCCCCCCceEECCEEEEE-cCCCeEEEEECCCCcEEEeecccC
Confidence            22 3578998876544      444 44577777655432110 0    011111 12234567775 466554443111


Q ss_pred             CCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          276 GKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       276 g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      +   ...+.....+++||+++. ...|+.++.
T Consensus       308 ~---~~~~~~~~~~~~l~v~~~-~g~l~~~d~  335 (376)
T 3q7m_A          308 H---RLLTSPVLYNGNLVVGDS-EGYLHWINV  335 (376)
T ss_dssp             T---SCCCCCEEETTEEEEECT-TSEEEEEET
T ss_pred             C---CcccCCEEECCEEEEEeC-CCeEEEEEC
Confidence            1   123334456899999986 567888874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.64  E-value=1.4e-05  Score=68.08  Aligned_cols=147  Identities=9%  Similarity=0.094  Sum_probs=95.1

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++++++... +.|..++..+++.......    ....+..++++|+++ ++++..             
T Consensus        24 ~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~s~~-------------   84 (312)
T 4ery_A           24 KAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG----HKLGISDVAWSSDSN-LLVSAS-------------   84 (312)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSS-EEEEEE-------------
T ss_pred             CcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhcc----CCCceEEEEEcCCCC-EEEEEC-------------
Confidence            4566899999 6765555444 4477888887765443322    112467899999999 444432             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          .++.|..||..+++...... .......++++|+++.| ++...++.|.+||...+..  ...+.........+++
T Consensus        85 ----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A           85 ----DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             ----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEE-EEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEE
T ss_pred             ----CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCEE--EEEecCCCCcEEEEEE
Confidence                27789999998776544332 23345789999999854 4556778999999874311  1112111223467899


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      +++|++.++....+.
T Consensus       158 ~~~~~~l~~~~~d~~  172 (312)
T 4ery_A          158 NRDGSLIVSSSYDGL  172 (312)
T ss_dssp             CTTSSEEEEEETTSC
T ss_pred             cCCCCEEEEEeCCCc
Confidence            999987777666554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.63  E-value=2.9e-05  Score=67.24  Aligned_cols=148  Identities=9%  Similarity=0.053  Sum_probs=86.2

Q ss_pred             ceeceEEEeCCCCcEEE-EECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC----------CEEEEEeCCCc
Q 046018           47 GRPLGIRFDKKTGDLYI-ADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK----------GVIYFTDSSTS  115 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v-~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g----------~~l~v~~~~~~  115 (310)
                      .....+++++ +++..+ +...+.|..+|..+........  .......+..++++|++          . ++++..   
T Consensus       119 ~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~---  191 (343)
T 2xzm_R          119 SEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAE--KENHSDWVSCVRYSPIMKSANKVQPFAP-YFASVG---  191 (343)
T ss_dssp             SCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCT--TTSCSSCEEEEEECCCCCSCSCCCSSCC-EEEEEE---
T ss_pred             CcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeec--ccCCCceeeeeeeccccccccccCCCCC-EEEEEc---
Confidence            4566899999 665444 4444458888887543221111  11112245677777776          5 344332   


Q ss_pred             hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC
Q 046018          116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL  195 (310)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (310)
                                    .++.|..||........+.........++++||++.| ++...++.|.+||...... ....+ ..
T Consensus       192 --------------~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~sgs~dg~v~iwd~~~~~~-~~~~~-~~  254 (343)
T 2xzm_R          192 --------------WDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDILNLTY-PQREF-DA  254 (343)
T ss_dssp             --------------TTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEE-EEEETTCEEEEEESSCCSS-CSEEE-EC
T ss_pred             --------------CCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEE-EEEcCCCeEEEEECCCCcc-cceee-cC
Confidence                          3788999996533223333333446789999999954 4556788999999843211 11112 11


Q ss_pred             CCCCCeeEECCCCCEEEEEecCC
Q 046018          196 PGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       196 ~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      ......+++++++.+.++...+.
T Consensus       255 ~~~v~~v~~sp~~~~la~~~d~~  277 (343)
T 2xzm_R          255 GSTINQIAFNPKLQWVAVGTDQG  277 (343)
T ss_dssp             SSCEEEEEECSSSCEEEEEESSC
T ss_pred             CCcEEEEEECCCCCEEEEECCCC
Confidence            22356789999998766554443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.63  E-value=2e-06  Score=75.33  Aligned_cols=149  Identities=9%  Similarity=0.069  Sum_probs=92.6

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +|+..++... +.|..+|.++++.......    ....++.+++.+++..++++..             
T Consensus       140 ~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~----h~~~v~~v~~s~~~~~~~~s~~-------------  201 (357)
T 4g56_B          140 DIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNA----HSSEVNCVAACPGKDTIFLSCG-------------  201 (357)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTCSSCEEEEE-------------
T ss_pred             CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcC----CCCCEEEEEEccCCCceeeeec-------------
Confidence            4566899999 7765555444 4488889998875433221    1234678999988753555442             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec---CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ---GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~---~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                          .++.|..||..+++......   ....+..++++|++..++++...++.|..||...+..  ...+.........+
T Consensus       202 ----~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~l  275 (357)
T 4g56_B          202 ----EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS--AQTSAVHSQNITGL  275 (357)
T ss_dssp             ----TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG--CEEECCCSSCEEEE
T ss_pred             ----cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE--eEEEeccceeEEEE
Confidence                26789999987765433221   1233578999998766777667788999999864321  12222122334678


Q ss_pred             EECCCCC-EEEEEecCCc
Q 046018          203 RSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       203 ~~d~~G~-l~va~~~~~~  219 (310)
                      ++.++|. +.++....+.
T Consensus       276 ~~sp~~~~~lasgs~D~~  293 (357)
T 4g56_B          276 AYSYHSSPFLASISEDCT  293 (357)
T ss_dssp             EECSSSSCCEEEEETTSC
T ss_pred             EEcCCCCCEEEEEeCCCE
Confidence            9998884 4444444443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.63  E-value=4.7e-05  Score=66.37  Aligned_cols=146  Identities=9%  Similarity=0.019  Sum_probs=90.9

Q ss_pred             eeceEEEeCCCC-cEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC--CCCEEEEEeCCCchhhhhhhhh
Q 046018           48 RPLGIRFDKKTG-DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE--HKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        48 ~p~gl~~d~~~g-~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....+++.+ ++ .|..+...+.|..+|.++++........    ...+..+++.+  +|+ ++++..            
T Consensus       156 ~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~g~-~l~sgs------------  217 (354)
T 2pbi_B          156 YLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGH----GADVLCLDLAPSETGN-TFVSGG------------  217 (354)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECCCSSCC-EEEEEE------------
T ss_pred             cEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC----CCCeEEEEEEeCCCCC-EEEEEe------------
Confidence            345788888 55 4555544445888899887654332211    11345566655  577 444432            


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--CCCCCe
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--PGFPDN  201 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~  201 (310)
                           .++.|..||..+++....... ....+.++++|+++ ++++...++.|..||+....  ....+...  ......
T Consensus       218 -----~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~  289 (354)
T 2pbi_B          218 -----CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADR--EVAIYSKESIIFGASS  289 (354)
T ss_dssp             -----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEE
T ss_pred             -----CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeE
Confidence                 278899999988776543333 33468999999998 45555678899999986431  11112111  112356


Q ss_pred             eEECCCCCEEEEEecCCc
Q 046018          202 VRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~  219 (310)
                      ++++++|++.++....+.
T Consensus       290 ~~~s~~g~~l~~g~~d~~  307 (354)
T 2pbi_B          290 VDFSLSGRLLFAGYNDYT  307 (354)
T ss_dssp             EEECTTSSEEEEEETTSC
T ss_pred             EEEeCCCCEEEEEECCCc
Confidence            889999988777766654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.62  E-value=7.2e-06  Score=72.40  Aligned_cols=187  Identities=11%  Similarity=0.012  Sum_probs=107.8

Q ss_pred             EEeccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCc-----------cc
Q 046018           25 AVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQ-----------PL   92 (310)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~-----------~~   92 (310)
                      ....+..++........+......+..+++++ +++ |+++...+.|..+|..+++...........           ..
T Consensus       128 ~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (425)
T 1r5m_A          128 ENGELRLWNKTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG  206 (425)
T ss_dssp             TTSCEEEEETTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred             CCCeEEEEeCCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence            33445555533321112222334567899998 555 555555555888999887654332221110           00


Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEec
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAET  171 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~  171 (310)
                      ..+..+++.+++. ++++.                  ..+.|..||..+++..... ........++++|+++.|+.+ .
T Consensus       207 ~~~~~~~~~~~~~-~~~~~------------------~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  266 (425)
T 1r5m_A          207 SLGVDVEWVDDDK-FVIPG------------------PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA-S  266 (425)
T ss_dssp             CCBSCCEEEETTE-EEEEC------------------GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE-E
T ss_pred             ceeeEEEEcCCCE-EEEEc------------------CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE-c
Confidence            1167888888876 66654                  3778999998876543322 223345789999999855554 6


Q ss_pred             CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccc
Q 046018          172 SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPL  240 (310)
Q Consensus       172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~  240 (310)
                      .++.|.+|+......  ...+.........+++.++| ++++....+.     +..++ ..++.+..+..
T Consensus       267 ~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-----i~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          267 DDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD-KVISCSMDGS-----VRLWSLKQNTLLALSIV  328 (425)
T ss_dssp             TTSCEEEECSSSBSC--SEEECCCSSCEEEEEEETTT-EEEEEETTSE-----EEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEECCCCcc--ceEecCCCccEEEEEECCCC-EEEEEeCCCc-----EEEEECCCCcEeEeccc
Confidence            778999999764311  12222222345678999999 5555444443     44443 45555554433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.61  E-value=1.1e-05  Score=78.01  Aligned_cols=162  Identities=7%  Similarity=0.027  Sum_probs=100.6

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++ |.++...+.|..+|.++++.......    ....+..++++|++++|..+.              
T Consensus        56 ~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~--------------  116 (814)
T 3mkq_A           56 TPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKPYVLSGS--------------  116 (814)
T ss_dssp             SCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEEE--------------
T ss_pred             CcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEec----CCCCEEEEEEeCCCCEEEEEc--------------
Confidence            4567899999 665 44554444588889887765433222    123578899999999555444              


Q ss_pred             hcCCCCceEEEEeCCCC-eEEEEec-CCcccceEEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCe
Q 046018          126 LSGDKTGRLLKYEKTTK-EVTILLQ-GLAFANGVALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDN  201 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~-~~~~~~~-~~~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~  201 (310)
                          .++.|..||.+++ ....... .......++++| +++ ++++...++.|.+|+......  ...+.. .......
T Consensus       117 ----~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~  189 (814)
T 3mkq_A          117 ----DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNY  189 (814)
T ss_dssp             ----TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCE
T ss_pred             ----CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcc--eeEEecCCCCCEEE
Confidence                2678999998765 3333332 334467899999 666 455556778999999864321  122222 2234567


Q ss_pred             eEECC--CCCEEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018          202 VRSNS--NGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       202 i~~d~--~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      +++.+  +|.+.++....+.     +..++ ..++.+..+.
T Consensus       190 ~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          190 VDYYPLPDKPYMITASDDLT-----IKIWDYQTKSCVATLE  225 (814)
T ss_dssp             EEECCSTTCCEEEEECTTSE-----EEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCE-----EEEEECCCCcEEEEEc
Confidence            88887  8877776666554     33433 4455554443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.61  E-value=7.1e-06  Score=78.65  Aligned_cols=203  Identities=10%  Similarity=0.048  Sum_probs=110.6

Q ss_pred             EEEeCCCCCeEEEEEeccccccccCC---CCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecC
Q 046018           12 LKWQGDELGWTEFAVTTSQRKECVRP---FAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAA   88 (310)
Q Consensus        12 ~~~~~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~   88 (310)
                      ..|.++....+-.....+..++..+.   ....+......+..+++++ +|+..+......|+.+|.++++..++.....
T Consensus       114 ~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRGRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             CEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEETTEEEEEETTTTEEEECCCCCC
T ss_pred             eEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeCCcEEEEecCCCCEEEeccCCc
Confidence            34666554311111244555666553   3233333335677899999 7764333334469999999887655432211


Q ss_pred             Cc------------cccCCcceEEeCCCCEEEEEeCCCchhh--------------hhhhhhhh-cCCCCceEEEEeCCC
Q 046018           89 GQ------------PLRFTNDLDIDEHKGVIYFTDSSTSFQR--------------RQFMSSIL-SGDKTGRLLKYEKTT  141 (310)
Q Consensus        89 ~~------------~~~~~~~i~~d~~g~~l~v~~~~~~~~~--------------~~~~~~~~-~~~~~g~v~~~d~~~  141 (310)
                      ..            ....+.+++++|||++|+++........              ....+... .......|+.||.++
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            10            0112578999999997777642110000              00000000 000122688999887


Q ss_pred             -CeEEEEecC---CcccceEEEecCCCeEEEEec----CCceEEEEEccCCCCCcceeeee-CCC---CCCeeEECCCCC
Q 046018          142 -KEVTILLQG---LAFANGVALSRDRTFILIAET----SNCRILRFWLHGPNSGKQDVFAE-LPG---FPDNVRSNSNGE  209 (310)
Q Consensus       142 -~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~----~~~~i~~~~~~~~~~~~~~~~~~-~~~---~p~~i~~d~~G~  209 (310)
                       ++...+...   ......++| |||+.|+++..    ....|+++|..++..  ...+.. ...   ....+++++||+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~spdg~  349 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHNSLRFLDDGS  349 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCSCCEECTTSC
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCCceEECCCCe
Confidence             776554322   233568999 99998877643    246899999875421  122222 111   235789999998


Q ss_pred             EEEEEecCC
Q 046018          210 FWVALHAKK  218 (310)
Q Consensus       210 l~va~~~~~  218 (310)
                      ++++....+
T Consensus       350 ~~~~~~~~g  358 (741)
T 2ecf_A          350 ILWSSERTG  358 (741)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEecCCC
Confidence            666655443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.61  E-value=4.1e-06  Score=79.31  Aligned_cols=155  Identities=13%  Similarity=0.027  Sum_probs=93.0

Q ss_pred             CCCCc-EEEEECC-CceEEEeCC--C-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           56 KKTGD-LYIADAY-LGFQVVGPE--G-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        56 ~~~g~-l~v~~~~-~gi~~~d~~--~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      |+... |.++... ..|+.++.+  + +..+++.............+++++|||++|+++.....-        ......
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~--------~~~~~~  159 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG--------EGPSDV  159 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS--------SSTTCE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccC--------CCCCCc
Confidence            73445 5555443 459999987  4 554444321100012245688999999977776521000        000012


Q ss_pred             CceEEEEeCCC------CeEEEEe-cCCcccceEEEecCCCeEEEEecCC-------ceEEEEEccC-CCCCcceeeee-
Q 046018          131 TGRLLKYEKTT------KEVTILL-QGLAFANGVALSRDRTFILIAETSN-------CRILRFWLHG-PNSGKQDVFAE-  194 (310)
Q Consensus       131 ~g~v~~~d~~~------~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~-------~~i~~~~~~~-~~~~~~~~~~~-  194 (310)
                      ...|+++|.++      ++.+.+. ........++++|||+.|+++....       ..|++++.++ +.......+.. 
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            35799999987      6666655 4444567789999999887765432       5899999873 32112333332 


Q ss_pred             CCCCCCeeEECCCCCEEEEEecCC
Q 046018          195 LPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       195 ~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      .......+++++||+++++....+
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~  263 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTG  263 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTS
T ss_pred             CCceEcceEECCCCeEEEEECCCC
Confidence            234456789999999877766544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.60  E-value=2.5e-05  Score=66.51  Aligned_cols=149  Identities=12%  Similarity=0.135  Sum_probs=95.0

Q ss_pred             cceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ......++++| ++.+.++....+ |..+|.+++.........    ......+++.++++ +.++..            
T Consensus        13 ~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~----~~~v~~~~~~~~~~-~l~s~s------------   74 (304)
T 2ynn_A           13 SDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVT----ETPVRAGKFIARKN-WIIVGS------------   74 (304)
T ss_dssp             CSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECC----SSCEEEEEEEGGGT-EEEEEE------------
T ss_pred             CCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeecc----CCcEEEEEEeCCCC-EEEEEC------------
Confidence            35677899999 776555555444 888899887653332221    12357889999999 444442            


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                           .++.|..||..+++...... .......++++|+++. +++.+.++.|..||...+.. ....+..-......++
T Consensus        75 -----~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~-~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           75 -----DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             -----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTE-EEEEECCCCSCEEEEE
T ss_pred             -----CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcc-hhhhhcccCCcEEEEE
Confidence                 27889999998876544333 2334678999999984 45557789999999864311 0111211123346788


Q ss_pred             ECC-CCCEEEEEecCCc
Q 046018          204 SNS-NGEFWVALHAKKG  219 (310)
Q Consensus       204 ~d~-~G~l~va~~~~~~  219 (310)
                      +++ ++.+.++....+.
T Consensus       148 ~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A          148 FNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             ECTTCTTEEEEEETTSE
T ss_pred             ECCCCCCEEEEEeCCCe
Confidence            888 5676666655554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.60  E-value=3.4e-05  Score=71.78  Aligned_cols=235  Identities=11%  Similarity=0.008  Sum_probs=126.9

Q ss_pred             ce-eceEEEeC--CCCcEEEEECCCceEEEeCCCC------eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018           47 GR-PLGIRFDK--KTGDLYIADAYLGFQVVGPEGG------LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ  117 (310)
Q Consensus        47 ~~-p~gl~~d~--~~g~l~v~~~~~gi~~~d~~~~------~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~  117 (310)
                      .. +..+++++  +...|..+...+.|..+|..++      ........ .. ....+..++++|+|++++++...    
T Consensus        64 ~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~~----  137 (615)
T 1pgu_A           64 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QV-LAGPISDISWDFEGRRLCVVGEG----  137 (615)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-EC-CSSCEEEEEECTTSSEEEEEECC----
T ss_pred             CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-hc-ccccEEEEEEeCCCCEEEEeccC----
Confidence            45 77899988  5555666655555777777543      22222111 11 12357889999999966555432    


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG  197 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (310)
                                ....+.|+.||.. .....+.........++++|+++.++++...++.|..|+.....  ....+.....
T Consensus       138 ----------~~~~~~v~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~  204 (615)
T 1pgu_A          138 ----------RDNFGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHK  204 (615)
T ss_dssp             ----------SSCSEEEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSC
T ss_pred             ----------CCCccEEEEEECC-CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCC
Confidence                      1123678888842 33333333334568899999998556666778999999976321  1111211122


Q ss_pred             ---CCCeeEECCC-CCEEEEEecCCccceeeeeecc-ccccEEeec-c---chhhhhcccccCCCCceEE--------EE
Q 046018          198 ---FPDNVRSNSN-GEFWVALHAKKGLFGKLILLNS-WLGKTLLKL-P---LSFRQLHSLLVGGKPHATA--------IK  260 (310)
Q Consensus       198 ---~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~-~---~~~~~~~~~~~~~~~~~~~--------~~  260 (310)
                         ....++++++ |++.++....+.     +..++ ..++.+..+ .   .....+..+.+. ....++        ..
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~  278 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSGEFVITVGSDRK-----ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRV  278 (615)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCC-----EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEE
T ss_pred             CCceEEEEEECCCCCCEEEEEeCCCe-----EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEE
Confidence               3467899999 887776655554     44443 566666665 2   222334444444 222211        11


Q ss_pred             ECCC-CCEEEEEEcCCCCeecceeEEE-EeCCEEEEecCCCCeEEEecc
Q 046018          261 LSEK-GEVLEVLEDCEGKTLSFISEVE-EKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       261 ~d~~-g~~~~~~~~~~g~~~~~~~~~~-~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      +|.. ++.+..+..+.......+..+. ..+..+..|+. +..|.+++.
T Consensus       279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~i~~~d~  326 (615)
T 1pgu_A          279 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYEL  326 (615)
T ss_dssp             EETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEET
T ss_pred             EECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC-CCCEEEEEC
Confidence            2211 3333333322111112233333 34566666665 666777764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.59  E-value=7.3e-05  Score=64.84  Aligned_cols=152  Identities=13%  Similarity=0.035  Sum_probs=91.0

Q ss_pred             cceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC--CCEEEEEeCCCchhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH--KGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~--g~~l~v~~~~~~~~~~~~~  122 (310)
                      ......+++++ +++++++... +.|..+|.+......+... .+ ....+.++++.++  ++ ++++..          
T Consensus        11 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~-~l~s~~----------   76 (379)
T 3jrp_A           11 NELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTL-TG-HEGPVWRVDWAHPKFGT-ILASCS----------   76 (379)
T ss_dssp             CCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEE-CC-CSSCEEEEEECCGGGCS-EEEEEE----------
T ss_pred             cccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEe-cC-CCCcEEEEEeCCCCCCC-EEEEec----------
Confidence            35567899999 6665555444 4477777764433322221 11 1224678888866  88 444432          


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEE--e-cCCcccceEEEecC--CCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTIL--L-QGLAFANGVALSRD--RTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG  197 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~--~-~~~~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (310)
                             .++.|..||..+++....  . ........++++|+  ++.++.+ ..++.|.+|+...........+.....
T Consensus        77 -------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           77 -------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA-SSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             -------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             -------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe-cCCCcEEEEecCCCCceeeEEecCCCC
Confidence                   267899999887763322  2 22344678999999  7755544 677899999987542222222222223


Q ss_pred             CCCeeEECC-------------CCCEEEEEecCCc
Q 046018          198 FPDNVRSNS-------------NGEFWVALHAKKG  219 (310)
Q Consensus       198 ~p~~i~~d~-------------~G~l~va~~~~~~  219 (310)
                      ....+++++             ++.+.++....+.
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  183 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL  183 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence            346678887             6777776665554

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.58  E-value=6.1e-07  Score=81.94  Aligned_cols=120  Identities=18%  Similarity=0.247  Sum_probs=82.0

Q ss_pred             ccceeceEEEeCCCCcEEEEECC---------------------Cc-eEEEeCCCC-------eEEEEEee--cC-----
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY---------------------LG-FQVVGPEGG-------LATQLVTE--AA-----   88 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~---------------------~g-i~~~d~~~~-------~~~~~~~~--~~-----   88 (310)
                      ...+|.++++++.+|+||++-..                     .| |+++..+++       +...++..  +.     
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            33589999999989999999642                     13 888865322       12333221  10     


Q ss_pred             ----------CccccCCcceEEeCCCCEEEE-EeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC--Ccccc
Q 046018           89 ----------GQPLRFTNDLDIDEHKGVIYF-TDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG--LAFAN  155 (310)
Q Consensus        89 ----------~~~~~~~~~i~~d~~g~~l~v-~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~~~  155 (310)
                                ...+..|++|+++++|+ ||| +|.....      ...+.......|+++++++++++.+...  ...|+
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd~~G~-LWf~TD~~~~~------~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpn  534 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSN------AGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT  534 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCC------SGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEE
T ss_pred             cccCccCccccCccCCCCceEECCCCC-EEEEeCCCcCc------cccccccCCceEEEEeCCCCeEEEEEeCCCCcccc
Confidence                      12467899999999999 999 5543110      0011223355799999998998887643  35689


Q ss_pred             eEEEecCCCeEEEEec
Q 046018          156 GVALSRDRTFILIAET  171 (310)
Q Consensus       156 gi~~~~d~~~lyv~~~  171 (310)
                      |++++||++.|||+-+
T Consensus       535 GiafSPD~ktLfV~vQ  550 (592)
T 4a9v_A          535 GISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEEECTTSSEEEEEEE
T ss_pred             CCEECCCCCEEEEEEe
Confidence            9999999999999854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.57  E-value=1.6e-05  Score=76.83  Aligned_cols=150  Identities=12%  Similarity=0.110  Sum_probs=97.0

Q ss_pred             ccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ....+..+++++ +|.+.++... +.|..+|..+++.......    ....+..++++|+|++|.++.            
T Consensus        12 h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~------------   74 (814)
T 3mkq_A           12 RSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQV----TETPVRAGKFIARKNWIIVGS------------   74 (814)
T ss_dssp             ECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEEC----CSSCEEEEEEEGGGTEEEEEE------------
T ss_pred             CCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEec----CCCcEEEEEEeCCCCEEEEEe------------
Confidence            345677999999 6664444444 4488889888765433221    112467899999999555544            


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                            .++.|..||..+++...... .......++++|+++.|+.+ ..++.|.+|+.+.+.. ....+.........+
T Consensus        75 ------~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~~~~~~-~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           75 ------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNWENNWA-LEQTFEGHEHFVMCV  146 (814)
T ss_dssp             ------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE-ETTSEEEEEEGGGTSE-EEEEEECCSSCEEEE
T ss_pred             ------CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEE-cCCCEEEEEECCCCce-EEEEEcCCCCcEEEE
Confidence                  27889999988776544333 33446789999999966554 5678999999874311 111222222345678


Q ss_pred             EECC-CCCEEEEEecCCc
Q 046018          203 RSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       203 ~~d~-~G~l~va~~~~~~  219 (310)
                      ++++ +|++.++....+.
T Consensus       147 ~~~p~~~~~l~~~~~dg~  164 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRT  164 (814)
T ss_dssp             EEETTEEEEEEEEETTSE
T ss_pred             EEEcCCCCEEEEEeCCCe
Confidence            8888 7766666655554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.57  E-value=0.00021  Score=63.17  Aligned_cols=160  Identities=8%  Similarity=-0.009  Sum_probs=93.7

Q ss_pred             ceeceEEEeCCCCcEE-EEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLY-IADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~-v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ ++.++ ++...+.|..+|..+++.......    ....+..+++  +++.++.+.              
T Consensus       135 ~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~--~~~~l~~~~--------------  193 (401)
T 4aez_A          135 TYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAG----HQARVGCLSW--NRHVLSSGS--------------  193 (401)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEEEEEE--ETTEEEEEE--------------
T ss_pred             CCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecC----CCCceEEEEE--CCCEEEEEc--------------
Confidence            4567899999 66544 444444588889887764333221    1123556666  455344443              


Q ss_pred             hcCCCCceEEEEeCCC-Ce-EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          126 LSGDKTGRLLKYEKTT-KE-VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~-~~-~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                          .++.|..||... +. ...+........+++++|+++.|+. ...++.|.+||...+.  ....+.........++
T Consensus       194 ----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~  266 (401)
T 4aez_A          194 ----RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS-GGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVA  266 (401)
T ss_dssp             ----TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTCSS--EEEEECCCSSCCCEEE
T ss_pred             ----CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE-EeCCCeEEEccCCCCC--ccEEecCCcceEEEEE
Confidence                378899999863 22 3333333445689999999985554 4667899999987431  1112222234457899


Q ss_pred             ECCCC-CEEEEEe--cCCccceeeeeecc-ccccEEeecc
Q 046018          204 SNSNG-EFWVALH--AKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       204 ~d~~G-~l~va~~--~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      +.++| .++++..  ..+.     +..++ ..++.+..+.
T Consensus       267 ~~p~~~~ll~~~~gs~d~~-----i~i~d~~~~~~~~~~~  301 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQ-----IHFWNAATGARVNTVD  301 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCE-----EEEEETTTCCEEEEEE
T ss_pred             ECCCCCCEEEEecCCCCCE-----EEEEECCCCCEEEEEe
Confidence            99977 4555443  2333     34433 4555555443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.56  E-value=9.3e-06  Score=70.36  Aligned_cols=145  Identities=11%  Similarity=0.019  Sum_probs=89.7

Q ss_pred             eeceEEEeC--CCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           48 RPLGIRFDK--KTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        48 ~p~gl~~d~--~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....+++++  ++..+..+...+.|..+|.++++...+...   .....+..++++|+|+ ++++..             
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~-~lasg~-------------  189 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSL-LLALYS-------------  189 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSC-EEEEEC-------------
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCCceEEEEECCCCC-EEEEEc-------------
Confidence            356788876  444444455445588889988876433221   1122478899999999 665543             


Q ss_pred             hcCCCCceEEEEeCCCCeEE--EEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCC-CcceeeeeCCCCC--
Q 046018          126 LSGDKTGRLLKYEKTTKEVT--ILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNS-GKQDVFAELPGFP--  199 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~--~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~p--  199 (310)
                          .++.|..||..+++..  .+.. .......++++|++..|..+.  .+.|.+||+..... .....+.. ...+  
T Consensus       190 ----~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~~-~~~~~~  262 (343)
T 3lrv_A          190 ----PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTI-PEFKTG  262 (343)
T ss_dssp             ----TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCBC------C
T ss_pred             ----CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeeccccc-cccccc
Confidence                2788999998877643  2322 234467999999999666654  44999999875321 11111110 1112  


Q ss_pred             -CeeEECCCCCEEEEEec
Q 046018          200 -DNVRSNSNGEFWVALHA  216 (310)
Q Consensus       200 -~~i~~d~~G~l~va~~~  216 (310)
                       ..++++++|++.++...
T Consensus       263 ~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             CEEEEECTTSSEEEEEET
T ss_pred             ceEEEECCCCCEEEEecC
Confidence             24999999987777554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.56  E-value=2.7e-05  Score=67.29  Aligned_cols=113  Identities=8%  Similarity=0.001  Sum_probs=76.3

Q ss_pred             ceeceEEEeCCC----CcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhh
Q 046018           47 GRPLGIRFDKKT----GDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        47 ~~p~gl~~d~~~----g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~  120 (310)
                      .....+++++ +    +.++++... +.|..+|.++++.......    ....+..++++| +++ ++++..        
T Consensus        70 ~~v~~~~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~-~l~s~~--------  135 (366)
T 3k26_A           70 ENFYTCAWTY-DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG----HGNAINELKFHPRDPN-LLLSVS--------  135 (366)
T ss_dssp             CCEEEEEEEE-CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES----CCSCEEEEEECSSCTT-EEEEEE--------
T ss_pred             CcEEEEEecc-CCCCCCCEEEEecCCCEEEEEEchhceEeeeecC----CCCcEEEEEECCCCCC-EEEEEe--------
Confidence            3456788888 5    444444444 4488889887765433321    123578899999 888 554442        


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                               .++.|..||..+++.....    ........++++|+++.|+.+ ..++.|.+|+...
T Consensus       136 ---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  192 (366)
T 3k26_A          136 ---------KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC-GMDHSLKLWRINS  192 (366)
T ss_dssp             ---------TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEESCS
T ss_pred             ---------CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEe-cCCCCEEEEECCC
Confidence                     2788999999887765543    223446789999999855554 5678999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.56  E-value=9.6e-06  Score=70.45  Aligned_cols=151  Identities=6%  Similarity=-0.000  Sum_probs=90.3

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +|+++++... +.|..++.+.+....+... .+ ....+..++++|+|+ ++++..             
T Consensus        62 ~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~-h~~~v~~v~~sp~~~-~l~s~s-------------  124 (345)
T 3fm0_A           62 RTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTL-EG-HENEVKSVAWAPSGN-LLATCS-------------  124 (345)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEE-CC-CSSCEEEEEECTTSS-EEEEEE-------------
T ss_pred             CcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEc-cC-CCCCceEEEEeCCCC-EEEEEE-------------
Confidence            4566899999 6665555444 4466777766544322221 11 123578899999999 555543             


Q ss_pred             hcCCCCceEEEEeCCCCe-EE---EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          126 LSGDKTGRLLKYEKTTKE-VT---ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~-~~---~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                          .++.|..||..++. .+   .+.........++++|+++.|. +.+.++.|..|+...+.......+..-......
T Consensus       125 ----~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~  199 (345)
T 3fm0_A          125 ----RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA-SASYDDTVKLYREEEDDWVCCATLEGHESTVWS  199 (345)
T ss_dssp             ----TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             ----CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE-EEeCCCcEEEEEecCCCEEEEEEecCCCCceEE
Confidence                26778888876542 22   1222233457899999998554 446778999998764311001111111233467


Q ss_pred             eEECCCCCEEEEEecCCc
Q 046018          202 VRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~  219 (310)
                      ++++++|++.++....+.
T Consensus       200 l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          200 LAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             EEECTTSSEEEEEETTSC
T ss_pred             EEECCCCCEEEEEeCCCe
Confidence            899999988777666554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.55  E-value=4e-05  Score=67.28  Aligned_cols=165  Identities=13%  Similarity=0.033  Sum_probs=92.7

Q ss_pred             ceeceEEEeCCC----C---cEEEEEC-CCceEEEeCCCCe------EEEEEeecCCc-cccCCcceEEe----CCCCE-
Q 046018           47 GRPLGIRFDKKT----G---DLYIADA-YLGFQVVGPEGGL------ATQLVTEAAGQ-PLRFTNDLDID----EHKGV-  106 (310)
Q Consensus        47 ~~p~gl~~d~~~----g---~l~v~~~-~~gi~~~d~~~~~------~~~~~~~~~~~-~~~~~~~i~~d----~~g~~-  106 (310)
                      .....+++++ +    +   +++++.. .+.|..++.++++      ...+ ...... ....+..++++    ++++. 
T Consensus        63 ~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~  140 (397)
T 1sq9_A           63 SGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHR  140 (397)
T ss_dssp             TCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred             CcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceE
Confidence            4456888888 6    6   5554444 4447777766554      2222 111000 02457889999    99994 


Q ss_pred             EEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC------Ce-EE-----EEe-------cCCcccceEEEecCCCeEE
Q 046018          107 IYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT------KE-VT-----ILL-------QGLAFANGVALSRDRTFIL  167 (310)
Q Consensus       107 l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~------~~-~~-----~~~-------~~~~~~~gi~~~~d~~~ly  167 (310)
                      ++++.                  .++.|..||..+      ++ ..     .+.       ........++++|++ .++
T Consensus       141 l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~  201 (397)
T 1sq9_A          141 LVATD------------------VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA  201 (397)
T ss_dssp             EEEEE------------------TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE
T ss_pred             EEEEe------------------CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEE
Confidence            44443                  267788888765      21 11     221       123346789999998 454


Q ss_pred             EEecCCceEEEEEccCCCCCcceeeee---C---CCCCCeeEECCCCCEEEEEecC---Cccceeeeeecc-ccccEEee
Q 046018          168 IAETSNCRILRFWLHGPNSGKQDVFAE---L---PGFPDNVRSNSNGEFWVALHAK---KGLFGKLILLNS-WLGKTLLK  237 (310)
Q Consensus       168 v~~~~~~~i~~~~~~~~~~~~~~~~~~---~---~~~p~~i~~d~~G~l~va~~~~---~~~~~~~i~~~~-~~g~~~~~  237 (310)
                       +...++.|.+||.....  ....+..   .   ......++++++|+++++....   +.     +..++ ..++.+..
T Consensus       202 -~~~~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-----i~i~d~~~~~~~~~  273 (397)
T 1sq9_A          202 -TGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-----ITLYETEFGERIGS  273 (397)
T ss_dssp             -EECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-----EEEEETTTCCEEEE
T ss_pred             -EEeCCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-----EEEEECCCCcccce
Confidence             44678899999987431  1112221   1   3345778999999877665554   43     44443 45666555


Q ss_pred             ccc
Q 046018          238 LPL  240 (310)
Q Consensus       238 ~~~  240 (310)
                      +..
T Consensus       274 ~~~  276 (397)
T 1sq9_A          274 LSV  276 (397)
T ss_dssp             ECB
T ss_pred             ecc
Confidence            543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.55  E-value=4.7e-05  Score=67.33  Aligned_cols=164  Identities=10%  Similarity=0.107  Sum_probs=101.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCC--------------ccccCCcceEEeCCCCEEEEEeC
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAG--------------QPLRFTNDLDIDEHKGVIYFTDS  112 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~i~~d~~g~~l~v~~~  112 (310)
                      .....+++++ +|+++++.....+..++..+++..........              .....+..++++|+|+ ++++..
T Consensus        65 ~~V~~v~fsp-dg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~s~~  142 (393)
T 1erj_A           65 SVVCCVKFSN-DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGA  142 (393)
T ss_dssp             SCCCEEEECT-TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEEEEE
T ss_pred             CEEEEEEECC-CCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC-EEEEEc
Confidence            3456899999 88877765555577788777764332211000              0011367899999999 444432


Q ss_pred             CCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCccee
Q 046018          113 STSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDV  191 (310)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~  191 (310)
                                       .++.|..||.++++....... ......++++|+++.|+ +...++.|.+||...+.   ...
T Consensus       143 -----------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~v~iwd~~~~~---~~~  201 (393)
T 1erj_A          143 -----------------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQ---CSL  201 (393)
T ss_dssp             -----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTE---EEE
T ss_pred             -----------------CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE-EecCCCcEEEEECCCCe---eEE
Confidence                             277899999988876554433 33457899999998555 45677899999987431   111


Q ss_pred             eeeCCCCCCeeEECC-CCCEEEEEecCCccceeeeeec-cccccEEeec
Q 046018          192 FAELPGFPDNVRSNS-NGEFWVALHAKKGLFGKLILLN-SWLGKTLLKL  238 (310)
Q Consensus       192 ~~~~~~~p~~i~~d~-~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~  238 (310)
                      ..........+++.+ +|++.++....+.     +..+ ...++.+..+
T Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~~~s~d~~-----v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRA-----VRVWDSETGFLVERL  245 (393)
T ss_dssp             EEECSSCEEEEEECSTTCCEEEEEETTSC-----EEEEETTTCCEEEEE
T ss_pred             EEEcCCCcEEEEEECCCCCEEEEEcCCCc-----EEEEECCCCcEEEee
Confidence            112223345678887 7887777666554     3343 3445555444

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.55  E-value=7.4e-06  Score=72.56  Aligned_cols=147  Identities=7%  Similarity=-0.066  Sum_probs=92.4

Q ss_pred             ceeceEEEeCCCC-cEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTG-DLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g-~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ..+..+++++ ++ +++++... +.|..+|.++++.......  ......+..++++|+|+.|+.+.             
T Consensus       132 ~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-------------  195 (402)
T 2aq5_A          132 KRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSC-------------  195 (402)
T ss_dssp             SCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECT--TTCCSCEEEEEECTTSSCEEEEE-------------
T ss_pred             CeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEec--CCCCCceEEEEECCCCCEEEEEe-------------
Confidence            5567899999 65 45554444 4588889988865433310  11123568899999999444443             


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEe-cCCc--ccceEEEecCCCeEEEEe--cCCceEEEEEccCCCCCcceeee-eCCCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILL-QGLA--FANGVALSRDRTFILIAE--TSNCRILRFWLHGPNSGKQDVFA-ELPGF  198 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~-~~~~--~~~gi~~~~d~~~lyv~~--~~~~~i~~~~~~~~~~~~~~~~~-~~~~~  198 (310)
                           .++.|..||..+++..... ....  .+..++++|+++.|+.+.  ..++.|.+||....... ..... .....
T Consensus       196 -----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~  269 (402)
T 2aq5_A          196 -----RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-LSLQELDTSSG  269 (402)
T ss_dssp             -----TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-SEEEECCCCSS
T ss_pred             -----cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-ceEEeccCCCc
Confidence                 2788999999887765433 2222  267899999987444432  56789999998743211 11111 12234


Q ss_pred             CCeeEECCCCCEEEEEe
Q 046018          199 PDNVRSNSNGEFWVALH  215 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~  215 (310)
                      ...++++++|++.+...
T Consensus       270 v~~~~~s~~~~~l~~~g  286 (402)
T 2aq5_A          270 VLLPFFDPDTNIVYLCG  286 (402)
T ss_dssp             CEEEEEETTTTEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEE
Confidence            56789999997665433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.54  E-value=2.2e-05  Score=68.49  Aligned_cols=146  Identities=10%  Similarity=0.057  Sum_probs=90.3

Q ss_pred             eeceEEEeCC-CCcEE-EEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           48 RPLGIRFDKK-TGDLY-IADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        48 ~p~gl~~d~~-~g~l~-v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....+++.+. +|.++ .+...+.|..+|.++++.......    ....++.++++|+++ ++++..             
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~----h~~~v~~v~~~p~~~-~l~s~s-------------  259 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET----HESDVNSVRYYPSGD-AFASGS-------------  259 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSS-EEEEEE-------------
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----CCCCeEEEEEeCCCC-EEEEEe-------------
Confidence            3445666552 34444 444445588899988765433221    123578899999999 555543             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCC---cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGL---AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~---~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                          .++.|..||..+++........   .....++++|+++.|+. ...++.|.+||...+.  ....+..-.+....+
T Consensus       260 ----~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~-g~~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l  332 (354)
T 2pbi_B          260 ----DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA-GYNDYTINVWDVLKGS--RVSILFGHENRVSTL  332 (354)
T ss_dssp             ----TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCS--EEEEECCCSSCEEEE
T ss_pred             ----CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE-EECCCcEEEEECCCCc--eEEEEECCCCcEEEE
Confidence                2778999998766544333221   23568999999995554 4677899999976331  111221122344678


Q ss_pred             EECCCCCEEEEEecCC
Q 046018          203 RSNSNGEFWVALHAKK  218 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~  218 (310)
                      +++++|++.++....+
T Consensus       333 ~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          333 RVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             EECTTSSCEEEEETTS
T ss_pred             EECCCCCEEEEEcCCC
Confidence            9999998777665554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.52  E-value=2.5e-05  Score=68.80  Aligned_cols=147  Identities=12%  Similarity=0.035  Sum_probs=91.7

Q ss_pred             eeceEEEeCCCCcEEEEECCCc-eEEEeCCC-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEG-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ....+++.+.+++++++....+ |..+|.+. +.......   + ....++.++++|+|+ .+++.+.            
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~---~-h~~~v~~v~~~p~~~-~l~s~s~------------  269 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH---G-HEGDINSVKFFPDGQ-RFGTGSD------------  269 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC---C-CSSCCCEEEECTTSS-EEEEECS------------
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC---C-cCCCeEEEEEecCCC-eEEEEcC------------
Confidence            4456777654566666655544 77788763 22211111   1 123578999999999 6666543            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCC--------cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGL--------AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---  194 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~--------~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---  194 (310)
                           ++.|..||..+++........        .....++++|+++.|+. ...++.|.+||...+..  ...+..   
T Consensus       270 -----D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~--~~~~~~~~~  341 (380)
T 3iz6_a          270 -----DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA-GYSNGDCYVWDTLLAEM--VLNLGTLQN  341 (380)
T ss_dssp             -----SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE-ECTTSCEEEEETTTCCE--EEEECCSCS
T ss_pred             -----CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE-EECCCCEEEEECCCCce--EEEEecccC
Confidence                 788999999887654433211        12468999999995554 46789999999763211  111111   


Q ss_pred             -CCCCCCeeEECCCCCEEEEEecCCc
Q 046018          195 -LPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       195 -~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                       -.+....++++++|.+.++....+.
T Consensus       342 ~h~~~v~~l~~s~dg~~l~sgs~D~~  367 (380)
T 3iz6_a          342 SHEGRISCLGLSSDGSALCTGSWDKN  367 (380)
T ss_dssp             SCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred             CCCCceEEEEECCCCCEEEEeeCCCC
Confidence             1234567899999988777665554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.52  E-value=2.1e-05  Score=70.49  Aligned_cols=152  Identities=9%  Similarity=0.085  Sum_probs=94.6

Q ss_pred             ceeceEEEeCCCCc-EEEEECCC-ceEEEeCCCCeE--EEE--EeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYL-GFQVVGPEGGLA--TQL--VTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~--~~~--~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~  119 (310)
                      ..+.+|++++ ++. ++++.... .|..++...+..  ..+  ...... ....+.+++++| ++. ++++...      
T Consensus       182 ~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~-~l~s~~~------  252 (430)
T 2xyi_A          182 KEGYGLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHES-LFGSVAD------  252 (430)
T ss_dssp             SCCCCEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTT-EEEEEET------
T ss_pred             CCeEEEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCC-EEEEEeC------
Confidence            4567899998 555 55555554 488888876321  000  011111 123578899999 566 6666532      


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCC----eEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTK----EVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL  195 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~----~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (310)
                                 ++.|..||..++    ....+......++.++++|+++.++++...++.|.+||...... ....+...
T Consensus       253 -----------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h  320 (430)
T 2xyi_A          253 -----------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFESH  320 (430)
T ss_dssp             -----------TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEECC
T ss_pred             -----------CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecC
Confidence                       788999998765    22223333445789999999987787778889999999874211 12222222


Q ss_pred             CCCCCeeEECCCC-CEEEEEecCCc
Q 046018          196 PGFPDNVRSNSNG-EFWVALHAKKG  219 (310)
Q Consensus       196 ~~~p~~i~~d~~G-~l~va~~~~~~  219 (310)
                      ......+++.++| .++++....+.
T Consensus       321 ~~~v~~i~~sp~~~~~l~s~~~d~~  345 (430)
T 2xyi_A          321 KDEIFQVQWSPHNETILASSGTDRR  345 (430)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCCEEEEEECCCCCCEEEEEeCCCc
Confidence            2345778999999 46666655554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.50  E-value=1.2e-05  Score=76.83  Aligned_cols=100  Identities=8%  Similarity=-0.074  Sum_probs=66.3

Q ss_pred             eceEEEeCCCCc-EEEEECC---------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           49 PLGIRFDKKTGD-LYIADAY---------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        49 p~gl~~d~~~g~-l~v~~~~---------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      +..+++++ +|+ |..+...         ..|+.+|.++++.+.+...  ......+..++++|||++|.++.       
T Consensus        63 v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~~~~SPdG~~la~~~-------  132 (723)
T 1xfd_A           63 AIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP--EVSNAKLQYAGWGPKGQQLIFIF-------  132 (723)
T ss_dssp             CSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT--TCCSCCCSBCCBCSSTTCEEEEE-------
T ss_pred             cceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC--ccccccccccEECCCCCEEEEEE-------
Confidence            67899999 676 4444332         2377889988876434221  11112367899999998666665       


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc-------------------ccceEEEecCCCeEEEEe
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA-------------------FANGVALSRDRTFILIAE  170 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-------------------~~~gi~~~~d~~~lyv~~  170 (310)
                                  .+.|+.+|.++++...+.....                   ...+++|+|||+.|+++.
T Consensus       133 ------------~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          133 ------------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             ------------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ------------CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                        4579999998877665543321                   125799999999887764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.50  E-value=9.9e-06  Score=71.73  Aligned_cols=147  Identities=9%  Similarity=0.023  Sum_probs=93.9

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ ++. |+.+...+.|..+|.++++.......  ......+..++++++++ ++++...            
T Consensus       177 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~l~~g~~------------  240 (402)
T 2aq5_A          177 DTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDR--PHEGTRPVHAVFVSEGK-ILTTGFS------------  240 (402)
T ss_dssp             SCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEEC--SSCSSSCCEEEECSTTE-EEEEEEC------------
T ss_pred             CceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeecc--CCCCCcceEEEEcCCCc-EEEEecc------------
Confidence            4567899999 665 55554445588899988775433311  11222467899999998 5555310            


Q ss_pred             hcCCCCceEEEEeCCCCeE--EEE-ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--CCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKEV--TIL-LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--PGFPD  200 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~--~~~-~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~  200 (310)
                        ...++.|..||..+++.  ... .........++++||++.|+++...++.|.+|+...+.. ....+...  .....
T Consensus       241 --~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-~~~~l~~~~~~~~v~  317 (402)
T 2aq5_A          241 --RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-FLHYLSMFSSKESQR  317 (402)
T ss_dssp             --TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-CEEEEEEECCSSCCS
T ss_pred             --CCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-ceEeecccccCCccc
Confidence              01378899999876532  111 123345678999999998888877789999999875421 02222222  24467


Q ss_pred             eeEECCCCCEEE
Q 046018          201 NVRSNSNGEFWV  212 (310)
Q Consensus       201 ~i~~d~~G~l~v  212 (310)
                      ++++.++|.+.+
T Consensus       318 ~~~~sp~~~~~~  329 (402)
T 2aq5_A          318 GMGYMPKRGLEV  329 (402)
T ss_dssp             EEEECCGGGSCG
T ss_pred             ceEEecccccce
Confidence            889988886544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.50  E-value=2.8e-05  Score=74.07  Aligned_cols=149  Identities=11%  Similarity=0.145  Sum_probs=92.1

Q ss_pred             ceeceEEEeCCCCc-EEEEECCC-----ceEEEeCCCC-eEEEEEeecCCccccCCcceEEeC--CCCEEEEEeCCCchh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYL-----GFQVVGPEGG-LATQLVTEAAGQPLRFTNDLDIDE--HKGVIYFTDSSTSFQ  117 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~-----gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~--~g~~l~v~~~~~~~~  117 (310)
                      ..+..+++++ +|+ |+++....     .|+.+|..++ ..+.+..............++++|  +|+++|++...    
T Consensus       258 ~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~----  332 (706)
T 2z3z_A          258 KFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD----  332 (706)
T ss_dssp             CEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT----
T ss_pred             eeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC----
Confidence            3466899999 665 66654332     4888999988 555443321111111246789999  99855544321    


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccce-EEEecCCCeEEEEecCCc----eEEEEEccCCCCCcceee
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANG-VALSRDRTFILIAETSNC----RILRFWLHGPNSGKQDVF  192 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~g-i~~~~d~~~lyv~~~~~~----~i~~~~~~~~~~~~~~~~  192 (310)
                                  ....|+.++.+++..+.+......... ++++||++.||++....+    .|++++.+++.   ...+
T Consensus       333 ------------g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l  397 (706)
T 2z3z_A          333 ------------GWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDL  397 (706)
T ss_dssp             ------------SSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEES
T ss_pred             ------------CccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceec
Confidence                        245688888766655555432222334 799999998988766654    88888876532   2222


Q ss_pred             eeCCCCCCeeEECCCCCEEEEEec
Q 046018          193 AELPGFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       193 ~~~~~~p~~i~~d~~G~l~va~~~  216 (310)
                      .. ......++++++|+.++....
T Consensus       398 ~~-~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          398 TP-ESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             CC-SSSEEEEEECTTSSEEEEEEE
T ss_pred             cC-CCceEEEEECCCCCEEEEEec
Confidence            21 123457899999986665443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.50  E-value=0.00016  Score=63.28  Aligned_cols=149  Identities=7%  Similarity=0.032  Sum_probs=92.5

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC---CCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE---HKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~---~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..+..+++.++++. |..+...+.|..+|.++++.......  .   .....+++.+   ++..++++.           
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~-----------  163 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--E---ETVYSHHMSPVSTKHCLVAVGT-----------  163 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--S---SCEEEEEECSSCSSCCEEEEEE-----------
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--C---CceeeeEeecCCCCCcEEEEEc-----------
Confidence            45678999884444 44444444588889988876544332  1   1345566665   555344443           


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee---------
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF---------  192 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~---------  192 (310)
                             .++.|..||..+++...... .......++++|+++.++++...++.|..||....... ...+         
T Consensus       164 -------~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~  235 (408)
T 4a11_B          164 -------RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQ  235 (408)
T ss_dssp             -------SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCC
T ss_pred             -------CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc-cccccccccccce
Confidence                   36789999987765443332 33446789999999876666678899999998643210 0111         


Q ss_pred             ------eeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          193 ------AELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       193 ------~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                            .........++++++|+..++....+.
T Consensus       236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence                  001123466899999987776665554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.49  E-value=3.1e-05  Score=67.86  Aligned_cols=159  Identities=11%  Similarity=0.010  Sum_probs=92.2

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCC--Cchh---hhhhhhhh
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSS--TSFQ---RRQFMSSI  125 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~--~~~~---~~~~~~~~  125 (310)
                      +++++++...|+++.....|+++|..+++.+.+......  ........++++|+ ++++...  ..+.   ........
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE--WVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEF  161 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh--cccccceeECCCCC-eeccccccCcccccccccchhhhh
Confidence            678999344577776656699999999887655443211  11112234588998 5543210  0000   00001112


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec-CCCeEEEEecC-----CceEEEEEccCCCCCcceeeeeCC-C-
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR-DRTFILIAETS-----NCRILRFWLHGPNSGKQDVFAELP-G-  197 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~-d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~-~-  197 (310)
                      ........|+.+|.++++.+.+.........++++| |++.|+++...     ...|+.++.+++..   ..+.... + 
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~  238 (388)
T 3pe7_A          162 YFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---RKVKTHAEGE  238 (388)
T ss_dssp             GGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC---EESCCCCTTE
T ss_pred             hccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce---EEeeeCCCCc
Confidence            223345789999999888877665555567899999 99877555433     34899999875422   2222211 1 


Q ss_pred             CCCeeEECCCCC-EEEEEe
Q 046018          198 FPDNVRSNSNGE-FWVALH  215 (310)
Q Consensus       198 ~p~~i~~d~~G~-l~va~~  215 (310)
                      .....++++||+ |++...
T Consensus       239 ~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          239 SCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEEEEEECTTSSCEEEEEE
T ss_pred             ccccceECCCCCEEEEEec
Confidence            123568999996 644443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.49  E-value=3.7e-05  Score=66.74  Aligned_cols=149  Identities=12%  Similarity=0.089  Sum_probs=90.6

Q ss_pred             eeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....+++++ +|++.++.... .|..+|.+++..........+ ....+..++++|+|+ +.++..              
T Consensus        18 ~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~-~l~s~s--------------   80 (345)
T 3fm0_A           18 RCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG-HQRTVRKVAWSPCGN-YLASAS--------------   80 (345)
T ss_dssp             CEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSS-CSSCEEEEEECTTSS-EEEEEE--------------
T ss_pred             cEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccc-cCCcEEEEEECCCCC-EEEEEE--------------
Confidence            456799999 77766555544 477778776653211111111 123578899999999 444432              


Q ss_pred             cCCCCceEEEEeCCCCeEEEE--ecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC---CCCCC
Q 046018          127 SGDKTGRLLKYEKTTKEVTIL--LQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL---PGFPD  200 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~--~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~  200 (310)
                         .++.+..|+..++..+.+  ... ......++++|+++. +++.+.++.|.+|+.+....  ......+   .....
T Consensus        81 ---~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A           81 ---FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDE--YECVSVLNSHTQDVK  154 (345)
T ss_dssp             ---TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECTTSC--EEEEEEECCCCSCEE
T ss_pred             ---CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCeEEEEECCCCCC--eEEEEEecCcCCCeE
Confidence               267788888766544322  222 234578999999985 44556778999999874321  1222211   22346


Q ss_pred             eeEECCCCCEEEEEecCCc
Q 046018          201 NVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~~  219 (310)
                      .+++.++|++.++....+.
T Consensus       155 ~~~~~p~~~~l~s~s~d~~  173 (345)
T 3fm0_A          155 HVVWHPSQELLASASYDDT  173 (345)
T ss_dssp             EEEECSSSSCEEEEETTSC
T ss_pred             EEEECCCCCEEEEEeCCCc
Confidence            6889999987666655554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.49  E-value=7.3e-05  Score=67.25  Aligned_cols=162  Identities=14%  Similarity=0.113  Sum_probs=98.8

Q ss_pred             eeceEEEeCCCCcE-EEEECCCc-eEEEeCC--CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           48 RPLGIRFDKKTGDL-YIADAYLG-FQVVGPE--GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        48 ~p~gl~~d~~~g~l-~v~~~~~g-i~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .+..+++++ +++. +++....+ |..+|..  ++..........  ....+..++++|+|++|++++            
T Consensus       104 ~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~------------  168 (450)
T 2vdu_B          104 YIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIAD------------  168 (450)
T ss_dssp             CEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEE------------
T ss_pred             ceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEEe------------
Confidence            467899999 6665 45554444 6677766  554433322110  112577899999999666655            


Q ss_pred             hhhcCCCCceEEEEeCCCCeEE-----EEecCCcccceEEEecC---CCeEEEEecCCceEEEEEccCCCCCcceeee-e
Q 046018          124 SILSGDKTGRLLKYEKTTKEVT-----ILLQGLAFANGVALSRD---RTFILIAETSNCRILRFWLHGPNSGKQDVFA-E  194 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~-----~~~~~~~~~~gi~~~~d---~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~  194 (310)
                            ..+.++.|+..++...     .+.........++++||   ++.|+ +...++.|.+|++..+..  ...+. .
T Consensus       169 ------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~d~~i~vwd~~~~~~--~~~~~~~  239 (450)
T 2vdu_B          169 ------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII-TSDRDEHIKISHYPQCFI--VDKWLFG  239 (450)
T ss_dssp             ------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE-EEETTSCEEEEEESCTTC--EEEECCC
T ss_pred             ------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE-EEcCCCcEEEEECCCCce--eeeeecC
Confidence                  2678999987665432     11122334678999999   77444 446678999999874321  11211 1


Q ss_pred             CCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018          195 LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       195 ~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      -......++++ +|++.++....+.     +..++ ..++.+..+.
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~-----v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDK-----IFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSE-----EEEEETTTCCEEEEEE
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCe-----EEEEECCCCcEeeeec
Confidence            22345778999 8987777665554     44443 4566665554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.48  E-value=7.4e-05  Score=65.43  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=95.6

Q ss_pred             ceeceEEEeCCCC-cEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTG-DLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g-~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....+++++ ++ +++++... +.|..+|..+++........  .....+.+++++| +++ ++++..           
T Consensus        74 ~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~-~l~s~~-----------  138 (383)
T 3ei3_B           74 RRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQGM--GPGDAITGMKFNQFNTN-QLFVSS-----------  138 (383)
T ss_dssp             SCEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECCC--STTCBEEEEEEETTEEE-EEEEEE-----------
T ss_pred             CCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeecC--CcCCceeEEEeCCCCCC-EEEEEe-----------
Confidence            4566899999 65 55554444 45888898877654443210  1123577899999 666 444432           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCC---cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGL---AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPD  200 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~---~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~  200 (310)
                            .++.|..||..+.....+....   .....++++|+++.|+.+ ..++.|..||..+.   ....+........
T Consensus       139 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~---~~~~~~~h~~~v~  208 (383)
T 3ei3_B          139 ------IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATG-DSTGRLLLLGLDGH---EIFKEKLHKAKVT  208 (383)
T ss_dssp             ------TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEE-ETTSEEEEEETTSC---EEEEEECSSSCEE
T ss_pred             ------CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEE-CCCCCEEEEECCCC---EEEEeccCCCcEE
Confidence                  2788999999876665554322   336789999999955554 67789999998532   1222222234457


Q ss_pred             eeEECCCCC-EEEEEecCCc
Q 046018          201 NVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       201 ~i~~d~~G~-l~va~~~~~~  219 (310)
                      .++++++|. ++++....+.
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~  228 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDAT  228 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSE
T ss_pred             EEEECCCCCCEEEEEeCCCE
Confidence            799999997 7666665554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.48  E-value=0.00014  Score=62.81  Aligned_cols=147  Identities=6%  Similarity=-0.025  Sum_probs=90.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ ++.+.++....+ |..+|.++++.......    ....+..++++|+++ ..++..             
T Consensus        77 ~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~-~l~s~~-------------  137 (343)
T 2xzm_R           77 HFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVG----HQSEVYSVAFSPDNR-QILSAG-------------  137 (343)
T ss_dssp             SCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEEC----CCSCEEEEEECSSTT-EEEEEE-------------
T ss_pred             CceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC----CCCcEEEEEECCCCC-EEEEEc-------------
Confidence            3456789998 776665555444 77889887765332221    112467899999999 444432             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec---CCcccceEEEecCCC---------eEEEEecCCceEEEEEccCCCCCcceeee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ---GLAFANGVALSRDRT---------FILIAETSNCRILRFWLHGPNSGKQDVFA  193 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~---~~~~~~gi~~~~d~~---------~lyv~~~~~~~i~~~~~~~~~~~~~~~~~  193 (310)
                          .++.|..||...........   .......++++|+++         .++++...++.|.+||....   ....+.
T Consensus       138 ----~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~  210 (343)
T 2xzm_R          138 ----AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ---IRYTFK  210 (343)
T ss_dssp             ----TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---EEEEEE
T ss_pred             ----CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc---eeEEEc
Confidence                27789999987443332221   112246788888762         25555577899999994321   111122


Q ss_pred             eCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          194 ELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       194 ~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ........++++++|++.++....+.
T Consensus       211 ~h~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          211 AHESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             CccccceEEEECCCCCEEEEEcCCCe
Confidence            22234567899999987777665554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.46  E-value=0.00052  Score=59.17  Aligned_cols=179  Identities=10%  Similarity=0.012  Sum_probs=107.5

Q ss_pred             CcccccCcEEEEEeCCCCCeEE-EEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE
Q 046018            2 PYTGVADGRILKWQGDELGWTE-FAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA   80 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~   80 (310)
                      ++++..++.|..|+.....-+. .....+.             ...-+|. ++....++.+.+-+....+..++..+++.
T Consensus        51 l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~-------------~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           51 CMCRCEDGALHFTQLKDSKTITTITTPNPR-------------TGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEECCC-------------TTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             EEEECCCCcEEEEECCCCcEEEEEecCCce-------------eeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            3567778888888876654221 1111111             1112233 33333377777777776677778777763


Q ss_pred             EEEEeecCCccccCCcceEEeC--CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC--Ccccce
Q 046018           81 TQLVTEAAGQPLRFTNDLDIDE--HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG--LAFANG  156 (310)
Q Consensus        81 ~~~~~~~~~~~~~~~~~i~~d~--~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~~~g  156 (310)
                      .......   ....+..++++|  +++ ++++..                 .++.|..||..+++.......  ......
T Consensus       117 ~~~~~~~---~~~~v~~~~~~~~~~~~-~l~s~s-----------------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~  175 (343)
T 3lrv_A          117 LREIEVD---SANEIIYMYGHNEVNTE-YFIWAD-----------------NRGTIGFQSYEDDSQYIVHSAKSDVEYSS  175 (343)
T ss_dssp             EEEEECC---CSSCEEEEECCC---CC-EEEEEE-----------------TTCCEEEEESSSSCEEEEECCCSSCCCCE
T ss_pred             eEEeecC---CCCCEEEEEcCCCCCCC-EEEEEe-----------------CCCcEEEEECCCCcEEEEEecCCCCceEE
Confidence            2222211   112467899999  999 555443                 278899999988776543322  224678


Q ss_pred             EEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecC
Q 046018          157 VALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       157 i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~  217 (310)
                      ++++||++ ++++...++.|.+||...+.... ..+.. -.+....++++++|.+.++...+
T Consensus       176 ~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~~~  235 (343)
T 3lrv_A          176 GVLHKDSL-LLALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVECDQ  235 (343)
T ss_dssp             EEECTTSC-EEEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEEESS
T ss_pred             EEECCCCC-EEEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            99999998 55555678999999987542210 12221 12345678999999877776654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.46  E-value=1.4e-05  Score=70.05  Aligned_cols=150  Identities=9%  Similarity=0.046  Sum_probs=93.9

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ..+..+++++ +|++.++....++.+++..++........  ......++.++++|+|+++..+...             
T Consensus       177 ~~V~~v~fsp-dg~~l~s~s~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~~s~d-------------  240 (365)
T 4h5i_A          177 GEVKDLHFST-DGKVVAYITGSSLEVISTVTGSCIARKTD--FDKNWSLSKINFIADDTVLIAASLK-------------  240 (365)
T ss_dssp             SCCCEEEECT-TSSEEEEECSSCEEEEETTTCCEEEEECC--CCTTEEEEEEEEEETTEEEEEEEES-------------
T ss_pred             CceEEEEEcc-CCceEEeccceeEEEEEeccCcceeeeec--CCCCCCEEEEEEcCCCCEEEEEecC-------------
Confidence            4566899999 88887777777788888776654322111  1112246789999999944443321             


Q ss_pred             cCCCCceEEEEeCCCCeEEE-----EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CC---C
Q 046018          127 SGDKTGRLLKYEKTTKEVTI-----LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LP---G  197 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~-----~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~---~  197 (310)
                       +.....+..|+........     +.........++++||+++| ++.+.++.|.+||...+     +.+.. +.   .
T Consensus       241 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l-asgs~D~~V~iwd~~~~-----~~~~~~~~gH~~  313 (365)
T 4h5i_A          241 -KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA-VLASNDNSIALVKLKDL-----SMSKIFKQAHSF  313 (365)
T ss_dssp             -SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE-EEEETTSCEEEEETTTT-----EEEEEETTSSSS
T ss_pred             -CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce-EEEcCCCEEEEEECCCC-----cEEEEecCcccC
Confidence             0112256777765554332     12223345789999999954 44567789999997643     22222 22   3


Q ss_pred             CCCeeEECCCCCEEEEEecCCc
Q 046018          198 FPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ....++++|||++.++....+.
T Consensus       314 ~V~~v~fSpdg~~laS~S~D~t  335 (365)
T 4h5i_A          314 AITEVTISPDSTYVASVSAANT  335 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSE
T ss_pred             CEEEEEECCCCCEEEEEeCCCe
Confidence            3467999999998887776664

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.46  E-value=8e-06  Score=71.37  Aligned_cols=151  Identities=7%  Similarity=-0.063  Sum_probs=83.9

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCe-EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGL-ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .....+++++ +++ |..+...+.|..+|.+++. ....... .. ....+..++++|+++.|+.+.             
T Consensus        56 ~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-------------  119 (377)
T 3dwl_C           56 KIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LR-LNRAATFVRWSPNEDKFAVGS-------------  119 (377)
T ss_dssp             SCEEEEEECT-TTCCEEEEETTSSEEEC------CCCCEEEC-CC-CSSCEEEEECCTTSSCCEEEE-------------
T ss_pred             ceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cc-cCCceEEEEECCCCCEEEEEe-------------
Confidence            5567899999 555 4444444458888887665 1111111 11 123567899999998444444             


Q ss_pred             hhcCCCCceEEEEeCCCCe----EEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCc-----------
Q 046018          125 ILSGDKTGRLLKYEKTTKE----VTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGK-----------  188 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~----~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~-----------  188 (310)
                           .++.|..||.++++    ...+.. .......++++|+++.|+. ...++.|..|+........           
T Consensus       120 -----~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  193 (377)
T 3dwl_C          120 -----GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRL  193 (377)
T ss_dssp             -----SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCC
T ss_pred             -----cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE-EeCCCEEEEEEEEecccCCCcccccccccc
Confidence                 26778999987664    233332 2344678999999985554 4667899999985321100           


Q ss_pred             --ceeeeeC--CCCCCeeEECCCCCEEEEEecCCc
Q 046018          189 --QDVFAEL--PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       189 --~~~~~~~--~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                        .......  .+....++++++|++.++....+.
T Consensus       194 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  228 (377)
T 3dwl_C          194 PFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSS  228 (377)
T ss_dssp             CEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred             chhhhhhcccCCceEEEEEECCCCCEEEEEeCCCc
Confidence              1111111  123467899999986666555554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.44  E-value=1.4e-05  Score=70.75  Aligned_cols=147  Identities=10%  Similarity=0.093  Sum_probs=91.4

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++++++... +.|..+|.++++.......    ....+.+++++|+++ .+++..             
T Consensus       140 ~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~s~~-------------  200 (420)
T 3vl1_A          140 SEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIG----HRATVTDIAIIDRGR-NVLSAS-------------  200 (420)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEEC----CSSCEEEEEEETTTT-EEEEEE-------------
T ss_pred             CccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcC----CCCcEEEEEEcCCCC-EEEEEc-------------
Confidence            5667899999 6655444444 4588889887654332221    122467899999999 444432             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCC-------------------------cccceEEEecCCCeEEEEecCCceEEEEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGL-------------------------AFANGVALSRDRTFILIAETSNCRILRFW  180 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~-------------------------~~~~gi~~~~d~~~lyv~~~~~~~i~~~~  180 (310)
                          .++.|..||..+++........                         .....++++|+++.|+. ...++.|.+||
T Consensus       201 ----~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d  275 (420)
T 3vl1_A          201 ----LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA-GHVSGVITVHN  275 (420)
T ss_dssp             ----TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE-EETTSCEEEEE
T ss_pred             ----CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE-EcCCCeEEEEE
Confidence                2678999998877655433211                         22345677888885554 46778999999


Q ss_pred             ccCCCCCcceeeee-CCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          181 LHGPNSGKQDVFAE-LPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       181 ~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ...+.  ....+.. .......++++++|. +.++....+.
T Consensus       276 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~  314 (420)
T 3vl1_A          276 VFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM  314 (420)
T ss_dssp             TTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             CCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe
Confidence            87431  1111111 123456789999997 6666555554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.44  E-value=0.0002  Score=64.31  Aligned_cols=173  Identities=10%  Similarity=0.029  Sum_probs=98.9

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEe--CCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID--EHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d--~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ..+..+++.+ ++.|..+...+.|..+|.++++.......    ....+..+++.  ++++ +.++..            
T Consensus       163 ~~V~~l~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~-~l~s~s------------  224 (464)
T 3v7d_B          163 GGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEG----HNSTVRCLDIVEYKNIK-YIVTGS------------  224 (464)
T ss_dssp             SCEEEEEECS-TTEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEEEESSSCE-EEEEEE------------
T ss_pred             cCEEEEEEcC-CCEEEEEeCCCCEEEEECCCCcEEEEECC----CCCccEEEEEecCCCCC-EEEEEc------------
Confidence            4566888887 66666665555688899988875433321    11245667776  5667 444432            


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEE----------------------ecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTIL----------------------LQGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~----------------------~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                           .++.|..||..++.....                      ........-.+++++++.++.+ ..++.|..||..
T Consensus       225 -----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~d~~i~vwd~~  298 (464)
T 3v7d_B          225 -----RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG-SYDNTLIVWDVA  298 (464)
T ss_dssp             -----TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEE-ETTSCEEEEETT
T ss_pred             -----CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEE-eCCCeEEEEECC
Confidence                 267788888765532110                      0011112234567888855554 677899999986


Q ss_pred             CCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccchhhhhccccc
Q 046018          183 GPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLSFRQLHSLLV  250 (310)
Q Consensus       183 ~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~  250 (310)
                      ...  ....+.........++++++|+..++....+.     +..++ ..++.+..+......+..+.+
T Consensus       299 ~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-----i~vwd~~~~~~~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          299 QMK--CLYILSGHTDRIYSTIYDHERKRCISASMDTT-----IRIWDLENGELMYTLQGHTALVGLLRL  360 (464)
T ss_dssp             TTE--EEEEECCCSSCEEEEEEETTTTEEEEEETTSC-----EEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCc--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence            421  11112112233467899999987777666565     44444 456666665443333333333

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.44  E-value=9e-06  Score=71.05  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=87.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +++++++....+ |..+|.+++....+... .+ ....+..++++|+++ ++++..             
T Consensus        12 ~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~-~l~s~s-------------   74 (377)
T 3dwl_C           12 KPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTF-SD-HDKIVTCVDWAPKSN-RIVTCS-------------   74 (377)
T ss_dssp             SCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCB-CC-CSSCEEEEEECTTTC-CEEEEE-------------
T ss_pred             CcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEE-ec-CCceEEEEEEeCCCC-EEEEEe-------------
Confidence            4566799999 777666554444 77777776632222111 11 123568899999998 444432             


Q ss_pred             hcCCCCceEEEEeCCCCe----EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCC-Ccceeeee-CCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKE----VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNS-GKQDVFAE-LPGFP  199 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~----~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~~~~~~~~-~~~~p  199 (310)
                          .++.|..||..+++    ...+.........++++|+++.|+.+ ..++.|.+|+.+.... .....+.. .....
T Consensus        75 ----~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v  149 (377)
T 3dwl_C           75 ----QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG-SGARVISVCYFEQENDWWVSKHLKRPLRSTI  149 (377)
T ss_dssp             ----TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEE-ESSSCEEECCC-----CCCCEEECSSCCSCE
T ss_pred             ----CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEE-ecCCeEEEEEECCcccceeeeEeecccCCCe
Confidence                26789999987765    22222333446789999999866555 5678999998875321 01122222 22345


Q ss_pred             CeeEECCCCCEEEEEecCCc
Q 046018          200 DNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       200 ~~i~~d~~G~l~va~~~~~~  219 (310)
                      ..++++++|++.++....+.
T Consensus       150 ~~~~~~~~~~~l~~~~~d~~  169 (377)
T 3dwl_C          150 LSLDWHPNNVLLAAGCADRK  169 (377)
T ss_dssp             EEEEECTTSSEEEEEESSSC
T ss_pred             EEEEEcCCCCEEEEEeCCCE
Confidence            67899999987776655554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.43  E-value=9.4e-06  Score=71.73  Aligned_cols=167  Identities=11%  Similarity=0.045  Sum_probs=97.5

Q ss_pred             ceeceEEEeCCCCc-EEEEE----------CCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCC
Q 046018           47 GRPLGIRFDKKTGD-LYIAD----------AYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST  114 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~----------~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~  114 (310)
                      ..+..+++++ +|+ ++++.          ... .|..+|..++.........  .....+..+++++++++|..+.   
T Consensus        13 ~~v~~~~~sp-~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~---   86 (416)
T 2pm9_A           13 SRTATFAWSH-DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGAL---   86 (416)
T ss_dssp             EESCBCCBCS-SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEE---
T ss_pred             hhcceEeeCC-CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEc---
Confidence            3455788888 665 55554          222 3777887765421111110  1123577899999999444443   


Q ss_pred             chhhhhhhhhhhcCCCCceEEEEeCCC----C-eEEEEecCCcccceEEEecC-CCeEEEEecCCceEEEEEccCCCCC-
Q 046018          115 SFQRRQFMSSILSGDKTGRLLKYEKTT----K-EVTILLQGLAFANGVALSRD-RTFILIAETSNCRILRFWLHGPNSG-  187 (310)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~v~~~d~~~----~-~~~~~~~~~~~~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~-  187 (310)
                                     .++.|..|+..+    . ....+.........++++|+ ++ ++++...++.|.+|+....... 
T Consensus        87 ---------------~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~  150 (416)
T 2pm9_A           87 ---------------DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESP  150 (416)
T ss_dssp             ---------------SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCT
T ss_pred             ---------------cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC-EEEEEcCCCeEEEEECCCCcccc
Confidence                           267899999876    2 23333333345688999998 66 5555577889999998754210 


Q ss_pred             ---cceee---eeCCCCCCeeEECCC-CCEEEEEecCCccceeeeeecc-ccccEEeeccc
Q 046018          188 ---KQDVF---AELPGFPDNVRSNSN-GEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPL  240 (310)
Q Consensus       188 ---~~~~~---~~~~~~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~  240 (310)
                         .....   .........++++++ ++++++....+.     +..++ ..++.+..+..
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~~~~  206 (416)
T 2pm9_A          151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF-----ASIWDLKAKKEVIHLSY  206 (416)
T ss_dssp             TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSC-----EEEEETTTTEEEEEECC
T ss_pred             ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCC-----EEEEECCCCCcceEEec
Confidence               01111   112234578999998 577777666554     44443 45555555443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.41  E-value=3.8e-05  Score=67.43  Aligned_cols=150  Identities=15%  Similarity=0.091  Sum_probs=91.3

Q ss_pred             ceeceEEEe----CCCCc--EEEEECCCceEEEeCCC------CeE-E-----EEEe--ecCCccccCCcceEEeCCCCE
Q 046018           47 GRPLGIRFD----KKTGD--LYIADAYLGFQVVGPEG------GLA-T-----QLVT--EAAGQPLRFTNDLDIDEHKGV  106 (310)
Q Consensus        47 ~~p~gl~~d----~~~g~--l~v~~~~~gi~~~d~~~------~~~-~-----~~~~--~~~~~~~~~~~~i~~d~~g~~  106 (310)
                      ..+..++++    + ++.  |+++...+.|..+|.++      ++. .     .+..  .........+..+++++++ .
T Consensus       122 ~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  199 (397)
T 1sq9_A          122 HSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  199 (397)
T ss_dssp             SCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             CcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence            556789999    8 555  44444444577777665      221 1     1211  0001122357899999999 5


Q ss_pred             EEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-------CcccceEEEecCCCeEEEEecCC---ceE
Q 046018          107 IYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-------LAFANGVALSRDRTFILIAETSN---CRI  176 (310)
Q Consensus       107 l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~~~~~gi~~~~d~~~lyv~~~~~---~~i  176 (310)
                      ++++.                  .++.|..||..+++.......       ......++++|+++.|+.+ ..+   +.|
T Consensus       200 l~~~~------------------~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~-~~d~~~g~i  260 (397)
T 1sq9_A          200 IATGF------------------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA-HDSNSFGCI  260 (397)
T ss_dssp             EEEEC------------------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE-EEETTEEEE
T ss_pred             EEEEe------------------CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE-ecCCCCceE
Confidence            66654                  378899999987766544443       4456899999999965554 556   799


Q ss_pred             EEEEccCCCCCcceeeee-------------CCCCCCeeEECCCCCEEEEEecCCc
Q 046018          177 LRFWLHGPNSGKQDVFAE-------------LPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~-------------~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      .+||.....  ....+..             .......++++++|++.++....+.
T Consensus       261 ~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  314 (397)
T 1sq9_A          261 TLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  314 (397)
T ss_dssp             EEEETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             EEEECCCCc--ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence            999987431  1112211             1223467899999987777665554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.41  E-value=2.7e-05  Score=67.13  Aligned_cols=147  Identities=8%  Similarity=0.024  Sum_probs=85.2

Q ss_pred             EEeCCCCcEEEEEC-CCceEEEeCCCCe-EEEEEeecCCccccCCcceE----EeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           53 RFDKKTGDLYIADA-YLGFQVVGPEGGL-ATQLVTEAAGQPLRFTNDLD----IDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        53 ~~d~~~g~l~v~~~-~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i~----~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ++++ +++++++.. .+.|..+|.+++. .........+........++    ++++++.++++.               
T Consensus       124 ~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---------------  187 (357)
T 3i2n_A          124 GIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY---------------  187 (357)
T ss_dssp             GCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE---------------
T ss_pred             ccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc---------------
Confidence            3456 555444444 4458888888764 22222211121122445566    568998444443               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEec---CCCeEEEEecCCceEEEEEccCCCCCc-cee--eeeCCCCCC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR---DRTFILIAETSNCRILRFWLHGPNSGK-QDV--FAELPGFPD  200 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~---d~~~lyv~~~~~~~i~~~~~~~~~~~~-~~~--~~~~~~~p~  200 (310)
                         .++.|..||..+++.............++++|   +++.++++ ..++.|..|+........ ...  +........
T Consensus       188 ---~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  263 (357)
T 3i2n_A          188 ---DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVW  263 (357)
T ss_dssp             ---TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEE
T ss_pred             ---cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEE
Confidence               26789999998887755444445678999999   88865555 677899999987432111 111  111223456


Q ss_pred             eeEECCCCC-EEEEEecCCc
Q 046018          201 NVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       201 ~i~~d~~G~-l~va~~~~~~  219 (310)
                      .+++.++|. ++++....+.
T Consensus       264 ~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          264 QVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             EEEEETTEEEEEEEEETTSE
T ss_pred             EEEECCCCCcEEEEEeCCCc
Confidence            788999997 5555544443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.39  E-value=1.5e-05  Score=71.49  Aligned_cols=152  Identities=11%  Similarity=-0.004  Sum_probs=97.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCe---EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGL---ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..+..+++++.++.++++.... .|..+|.+++.   .......    ....++.|+++|++.+++++..          
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~v~~i~~~p~~~~~l~tg~----------  297 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA----HTAEVNCLSFNPYSEFILATGS----------  297 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC----CSSCEEEEEECSSCTTEEEEEE----------
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec----CCCCeEEEEeCCCCCCEEEEEe----------
Confidence            4577899988556677665554 48888887652   1111111    1235789999999874565543          


Q ss_pred             hhhhcCCCCceEEEEeCCCC-e-EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCC-C--------ccee
Q 046018          123 SSILSGDKTGRLLKYEKTTK-E-VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNS-G--------KQDV  191 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~-~-~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~-~--------~~~~  191 (310)
                             .++.|..||..+. . ...+.........++++|+++.++++...+++|.+|+...... .        ....
T Consensus       298 -------~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  370 (430)
T 2xyi_A          298 -------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL  370 (430)
T ss_dssp             -------TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred             -------CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence                   2788999998652 2 3333333445688999999987888878889999999874211 0        0122


Q ss_pred             eeeC---CCCCCeeEECCCCC-EEEEEecCCc
Q 046018          192 FAEL---PGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       192 ~~~~---~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      +...   ...+..+++++++. ++++....+.
T Consensus       371 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~  402 (430)
T 2xyi_A          371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNI  402 (430)
T ss_dssp             EEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred             EEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence            2221   23467899999998 7777666554

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.39  E-value=5.3e-05  Score=66.38  Aligned_cols=154  Identities=14%  Similarity=0.167  Sum_probs=101.0

Q ss_pred             eeceEEEe-CC------CCcEEEEECC-CceEEEeCCCCeEEEEEeec--C---------Ccc---ccCCcceEEeCC--
Q 046018           48 RPLGIRFD-KK------TGDLYIADAY-LGFQVVGPEGGLATQLVTEA--A---------GQP---LRFTNDLDIDEH--  103 (310)
Q Consensus        48 ~p~gl~~d-~~------~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~--~---------~~~---~~~~~~i~~d~~--  103 (310)
                      ....|++| .+      ++.+|+++.. .+|.++|..+++..++....  .         +..   .....+|+++|+  
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~  232 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDS  232 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCT
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcC
Confidence            45578898 21      4679999986 47999999998877665321  1         111   135778999998  


Q ss_pred             --CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEe------CC-CCeEEEEecCCcccc--eEEEecCCCeEEEEecC
Q 046018          104 --KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYE------KT-TKEVTILLQGLAFAN--GVALSRDRTFILIAETS  172 (310)
Q Consensus       104 --g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d------~~-~~~~~~~~~~~~~~~--gi~~~~d~~~lyv~~~~  172 (310)
                        +++||+....                 ...++++.      .. ...++.+........  ++++++....||+++..
T Consensus       233 ~~~~~LYf~pls-----------------s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~  295 (381)
T 3q6k_A          233 EGNRPAYYLAGS-----------------AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN  295 (381)
T ss_dssp             TSCCEEEEEESS-----------------CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS
T ss_pred             CCCeEEEEEECC-----------------CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc
Confidence              7889998754                 22455543      10 123444444432233  56676333459999999


Q ss_pred             CceEEEEEccC-CC-CCcceeeeeCC--CCCCeeEECCCCCEEEEEecCC
Q 046018          173 NCRILRFWLHG-PN-SGKQDVFAELP--GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       173 ~~~i~~~~~~~-~~-~~~~~~~~~~~--~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      ++.|.+|++++ .. ......+...+  .+|+++.+|.+|.||+..++-.
T Consensus       296 ~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~l~  345 (381)
T 3q6k_A          296 TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNGFP  345 (381)
T ss_dssp             SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECSCC
T ss_pred             CCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECcch
Confidence            99999999875 21 12334444432  4799999999999999987643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.38  E-value=0.00017  Score=62.05  Aligned_cols=151  Identities=10%  Similarity=0.071  Sum_probs=85.4

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....+++++ + .|..+...+.|..+|.+++..+.+...........++.++++|+++ +.++...             
T Consensus        15 ~~v~~~~~s~-~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~-------------   78 (330)
T 2hes_X           15 EKIWSFDFSQ-G-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF-------------   78 (330)
T ss_dssp             SCEEEEEEET-T-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEET-------------
T ss_pred             CceeeeccCC-C-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeC-------------
Confidence            3455678877 4 4444444444777787765322221111111123578899999999 5555432             


Q ss_pred             cCCCCceEEEEeCCCC-------eEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC---
Q 046018          127 SGDKTGRLLKYEKTTK-------EVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL---  195 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~-------~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---  195 (310)
                          ++.|..|+.+..       +......+ ......++++|+++.| ++.+.++.|.+|+.+.... .......+   
T Consensus        79 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~l-as~s~D~~v~iwd~~~~~~-~~~~~~~~~~h  152 (330)
T 2hes_X           79 ----DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL-ATCSRDKSVWIWETDESGE-EYECISVLQEH  152 (330)
T ss_dssp             ----TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEE-EEEETTSCEEEEECCTTCC-CCEEEEEECCC
T ss_pred             ----CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEeccCCCC-CeEEEEEeccC
Confidence                677888887432       11111222 2335789999999854 4556788999999842111 11222222   


Q ss_pred             CCCCCeeEECCCCCEEEEEecCCc
Q 046018          196 PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       196 ~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ......++++++|++.++....+.
T Consensus       153 ~~~v~~v~~~p~~~~l~s~s~D~~  176 (330)
T 2hes_X          153 SQDVKHVIWHPSEALLASSSYDDT  176 (330)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSC
T ss_pred             CCceEEEEECCCCCEEEEEcCCCe
Confidence            233467899999988777766554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.38  E-value=6.6e-05  Score=69.79  Aligned_cols=162  Identities=7%  Similarity=-0.047  Sum_probs=95.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCC----eEEEEEeecCCccccC-CcceEEeC--CCCEEEEEeCCCchhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG----LATQLVTEAAGQPLRF-TNDLDIDE--HKGVIYFTDSSTSFQRR  119 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~----~~~~~~~~~~~~~~~~-~~~i~~d~--~g~~l~v~~~~~~~~~~  119 (310)
                      +.+..+++++ +|+++++...+.|..++.+++    +.......    .... +..++++|  ++++|+.+.        
T Consensus        19 ~~v~~~~~sp-dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~----h~~~~v~~~~~sp~~~~~~l~s~~--------   85 (615)
T 1pgu_A           19 NFTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG----HGSSVVTTVKFSPIKGSQYLCSGD--------   85 (615)
T ss_dssp             TCCCCCEEET-TTTEEEEEETTEEEEEECCSSCCSSCSEEEECT----TTTSCEEEEEECSSTTCCEEEEEE--------
T ss_pred             CceeEEEECC-CCCEEEEecCCeEEEEECCCCCCccccceEEec----CCCceEEEEEECcCCCCCEEEEec--------
Confidence            5677899999 776555544555888888766    43222221    1124 68899999  999444443        


Q ss_pred             hhhhhhhcCCCCceEEEEeCCCC------eEEE---EecCCcccceEEEecCCCeEEEEecCC---ceEEEEEccCCCCC
Q 046018          120 QFMSSILSGDKTGRLLKYEKTTK------EVTI---LLQGLAFANGVALSRDRTFILIAETSN---CRILRFWLHGPNSG  187 (310)
Q Consensus       120 ~~~~~~~~~~~~g~v~~~d~~~~------~~~~---~~~~~~~~~gi~~~~d~~~lyv~~~~~---~~i~~~~~~~~~~~  187 (310)
                                .++.|..||..++      ..+.   +.........++++||++.|+++....   +.|+.|+.. .   
T Consensus        86 ----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~-~---  151 (615)
T 1pgu_A           86 ----------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-N---  151 (615)
T ss_dssp             ----------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-C---
T ss_pred             ----------CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC-C---
Confidence                      2678888988544      2222   222334468899999999777664432   577777621 1   


Q ss_pred             cceeeeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeec-cccccEEeeccc
Q 046018          188 KQDVFAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLN-SWLGKTLLKLPL  240 (310)
Q Consensus       188 ~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~  240 (310)
                      ....+.........+++.++|. +.++....+.     +..+ ...++.+..+..
T Consensus       152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----v~vwd~~~~~~~~~~~~  201 (615)
T 1pgu_A          152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS-----VVFYQGPPFKFSASDRT  201 (615)
T ss_dssp             EEEECCSCSSCEEEEEECSSSSCEEEEEETTTE-----EEEEETTTBEEEEEECS
T ss_pred             cceeeecCCccEEEEEECCCCCcEEEEEeCCCc-----EEEEeCCCcceeeeecc
Confidence            1111211223456789999996 5555555444     3333 345555555543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.36  E-value=0.00017  Score=68.72  Aligned_cols=146  Identities=10%  Similarity=0.072  Sum_probs=91.8

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC--CEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK--GVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g--~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....+++++ +++ |..+...+.|..+|..+.....+.... ......+..++++|++  . +.++.+           
T Consensus       473 ~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~-~l~s~s-----------  538 (694)
T 3dm0_A          473 KDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGG-EGHRDWVSCVRFSPNTLQP-TIVSAS-----------  538 (694)
T ss_dssp             SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSST-TSCSSCEEEEEECSCSSSC-EEEEEE-----------
T ss_pred             CCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCC-CCCCCcEEEEEEeCCCCcc-eEEEEe-----------
Confidence            4566899999 555 444444445888887765433222111 1112246788898886  4 444432           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPD  200 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~  200 (310)
                            .++.|..||..+++....... ......++++||++ ++++.+.++.|.+||...+     ..+..  ......
T Consensus       539 ------~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~-----~~~~~~~~~~~v~  606 (694)
T 3dm0_A          539 ------WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEG-----KKLYSLEANSVIH  606 (694)
T ss_dssp             ------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTT-----EEEECCBCSSCEE
T ss_pred             ------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC-----ceEEEecCCCcEE
Confidence                  277899999987766544333 33467899999998 5555577889999998643     11111  123346


Q ss_pred             eeEECCCCCEEEEEecCC
Q 046018          201 NVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~  218 (310)
                      .+++++++.+.++.....
T Consensus       607 ~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          607 ALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             EEEECSSSSEEEEEETTE
T ss_pred             EEEEcCCCcEEEEEcCCC
Confidence            789999998777765544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.36  E-value=0.00036  Score=58.70  Aligned_cols=221  Identities=14%  Similarity=0.070  Sum_probs=111.8

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .....+++++ ++.++++... +.|..++...... ..+... .. ....+..+++  +++.++.+.             
T Consensus        60 ~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~--~~~~l~~~~-------------  121 (313)
T 3odt_A           60 GFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTL-IG-HQGNVCSLSF--QDGVVISGS-------------  121 (313)
T ss_dssp             SCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEE-CC-CSSCEEEEEE--ETTEEEEEE-------------
T ss_pred             ccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccch-hh-cccCEEEEEe--cCCEEEEEe-------------
Confidence            4566899999 6655444444 4466666543311 011111 11 1123456666  456344444             


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCee
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNV  202 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i  202 (310)
                           .++.|..||.. .....+.........+++.+ +++.++ +...++.|..||...    ....+.. .......+
T Consensus       122 -----~d~~i~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~  190 (313)
T 3odt_A          122 -----WDKTAKVWKEG-SLVYNLQAHNASVWDAKVVSFSENKFL-TASADKTIKLWQNDK----VIKTFSGIHNDVVRHL  190 (313)
T ss_dssp             -----TTSEEEEEETT-EEEEEEECCSSCEEEEEEEETTTTEEE-EEETTSCEEEEETTE----EEEEECSSCSSCEEEE
T ss_pred             -----CCCCEEEEcCC-cEEEecccCCCceeEEEEccCCCCEEE-EEECCCCEEEEecCc----eEEEEeccCcccEEEE
Confidence                 27789999932 23333333344456788888 777555 446778999998321    1122222 22345678


Q ss_pred             EECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccchhhhhcccccCCCC-------ceEEEEECC-CCCEEEEEEc
Q 046018          203 RSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLSFRQLHSLLVGGKP-------HATAIKLSE-KGEVLEVLED  273 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~-~g~~~~~~~~  273 (310)
                      ++.++|.++++... +.     +..++ ..++.+..+........++.+....       ...+..+|. +++.+..+..
T Consensus       191 ~~~~~~~~~~~~~d-g~-----i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  264 (313)
T 3odt_A          191 AVVDDGHFISCSND-GL-----IKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL  264 (313)
T ss_dssp             EEEETTEEEEEETT-SE-----EEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC
T ss_pred             EEcCCCeEEEccCC-Ce-----EEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec
Confidence            88899985555444 33     44443 4455555543332223333333222       112222332 2444444433


Q ss_pred             CCCCeecceeEEEEe-CCEEEEecCCCCeEEEecc
Q 046018          274 CEGKTLSFISEVEEK-DGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       274 ~~g~~~~~~~~~~~~-~g~l~vgs~~~~~i~~~~~  307 (310)
                      +.    ..+..+... ++++..++. +..|.+++.
T Consensus       265 ~~----~~i~~~~~~~~~~~~~~~~-dg~i~iw~~  294 (313)
T 3odt_A          265 PA----ISIWSVDCMSNGDIIVGSS-DNLVRIFSQ  294 (313)
T ss_dssp             SS----SCEEEEEECTTSCEEEEET-TSCEEEEES
T ss_pred             cC----ceEEEEEEccCCCEEEEeC-CCcEEEEeC
Confidence            22    124455443 567666655 667887765

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.36  E-value=0.00025  Score=72.01  Aligned_cols=112  Identities=12%  Similarity=0.024  Sum_probs=78.0

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .+..+++++ +|...++...+.+..+|..++........   .....+..++++|+++ +.++..               
T Consensus       800 ~v~~~~~s~-dg~~l~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~v~~~~~sp~~~-~l~~~~---------------  859 (1249)
T 3sfz_A          800 IVKCCSWSA-DGDKIIVAAKNKVLLFDIHTSGLLAEIHT---GHHSTIQYCDFSPYDH-LAVIAL---------------  859 (1249)
T ss_dssp             CBCCCCBCT-TSSEEEEEETTEEEEEETTTCCEEEEEEC---SSSSCCCEEEECSSTT-EEEEEC---------------
T ss_pred             eEEEEEECC-CCCEEEEEcCCcEEEEEecCCCceeEEcC---CCCCceEEEEEcCCCC-EEEEEe---------------
Confidence            455788888 77666665566789999888765433221   1223578899999999 555543               


Q ss_pred             CCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                        .++.|..||.+++........ ......++++|+++.++. .+.++.|..|+..
T Consensus       860 --~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s-~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          860 --SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT-ASDDQTIRVWETK  912 (1249)
T ss_dssp             --SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEEHH
T ss_pred             --CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEE-EeCCCeEEEEEcc
Confidence              277899999988766543333 334689999999995554 4677899999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.34  E-value=0.0006  Score=58.58  Aligned_cols=148  Identities=10%  Similarity=-0.008  Sum_probs=83.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCe-----EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGL-----ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~-----~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      .....+++++ ++++.++.... .|..+|.+...     ...+... .+ ....+.+++++|+|+ .+++.+        
T Consensus        59 ~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~-h~~~V~~v~~sp~g~-~las~s--------  126 (330)
T 2hes_X           59 KAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EG-HENEVKGVAWSNDGY-YLATCS--------  126 (330)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C-----CEEEEEECTTSC-EEEEEE--------
T ss_pred             CCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cC-CCCcEEEEEECCCCC-EEEEEe--------
Confidence            3466899999 67765555444 47777764321     1111111 11 122467899999999 555443        


Q ss_pred             hhhhhhcCCCCceEEEEeCCC-C---eEE-EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC
Q 046018          121 FMSSILSGDKTGRLLKYEKTT-K---EVT-ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL  195 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~-~---~~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~  195 (310)
                               .++.|..||... +   +.. .+.........++++|+++ ++++...++.|..|+...+   ....+..+
T Consensus       127 ---------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~---~~~~~~~~  193 (330)
T 2hes_X          127 ---------RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDD---DWECVAVL  193 (330)
T ss_dssp             ---------TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETT---EEEEEEEE
T ss_pred             ---------CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCC---CeeEEEEc
Confidence                     277899999732 2   222 2222233467899999998 5555577889999987532   11222222


Q ss_pred             C---CCCCeeEECCC--CCEEEEEecCCc
Q 046018          196 P---GFPDNVRSNSN--GEFWVALHAKKG  219 (310)
Q Consensus       196 ~---~~p~~i~~d~~--G~l~va~~~~~~  219 (310)
                      .   +....+.++++  +.+.++....+.
T Consensus       194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          194 NGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             CCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             cCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence            2   23456788887  555555444443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.34  E-value=0.00017  Score=67.70  Aligned_cols=147  Identities=9%  Similarity=-0.021  Sum_probs=87.3

Q ss_pred             cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .+.+..++++| +|++.+......|..++.++++.......    ....+..++++|+|+ +.++..             
T Consensus        18 ~g~~~~~~~sp-dg~~l~~~~~~~v~l~~~~~~~~~~~~~~----h~~~v~~~~~spdg~-~lasg~-------------   78 (611)
T 1nr0_A           18 RGTAVVLGNTP-AGDKIQYCNGTSVYTVPVGSLTDTEIYTE----HSHQTTVAKTSPSGY-YCASGD-------------   78 (611)
T ss_dssp             TTCCCCCEECT-TSSEEEEEETTEEEEEETTCSSCCEEECC----CSSCEEEEEECTTSS-EEEEEE-------------
T ss_pred             cCceeEEeeCC-CCCEEEeCCCCEEEEecCCCcccCeEecC----CCCceEEEEECCCCc-EEEEEe-------------
Confidence            46778899999 77655554445577888876544333221    112467899999999 555543             


Q ss_pred             hcCCCCceEEEEeCCCCe--EE-EEecCCcccceEEEecCCCeEEEEecCC---ceEEEEEccCCCCCcceeeeeCCCCC
Q 046018          126 LSGDKTGRLLKYEKTTKE--VT-ILLQGLAFANGVALSRDRTFILIAETSN---CRILRFWLHGPNSGKQDVFAELPGFP  199 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~--~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~p  199 (310)
                          .++.|..||..+++  .. .+.........++|+||++.|..+....   +.|+.|+.. ..   ...+..-....
T Consensus        79 ----~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-~~---~~~l~gh~~~v  150 (611)
T 1nr0_A           79 ----VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TS---NGNLTGQARAM  150 (611)
T ss_dssp             ----TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CB---CBCCCCCSSCE
T ss_pred             ----CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-CC---cceecCCCCCc
Confidence                27889999985432  22 2222223467899999999776654432   367666532 11   11111111234


Q ss_pred             CeeEECCCCC-EEEEEecCCc
Q 046018          200 DNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       200 ~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ..+++.+++. +.++....+.
T Consensus       151 ~~v~f~p~~~~~l~s~s~D~~  171 (611)
T 1nr0_A          151 NSVDFKPSRPFRIISGSDDNT  171 (611)
T ss_dssp             EEEEECSSSSCEEEEEETTSC
T ss_pred             eEEEECCCCCeEEEEEeCCCe
Confidence            6789999986 3454444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.33  E-value=0.00043  Score=70.20  Aligned_cols=148  Identities=13%  Similarity=0.084  Sum_probs=92.8

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC--CCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH--KGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~--g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ..+..+++++ +|++.++... +.|..+|..+++.......    ....+..++++++  +. +.++..           
T Consensus       658 ~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~-~l~sg~-----------  720 (1249)
T 3sfz_A          658 DEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDE----HSEQVNCCHFTNKSNHL-LLATGS-----------  720 (1249)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSCC-EEEEEE-----------
T ss_pred             CCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEcC----CCCcEEEEEEecCCCce-EEEEEe-----------
Confidence            5567899999 6665555444 4488889988875443332    1224677888884  44 444432           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCc-cee---ee-----
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGK-QDV---FA-----  193 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~-~~~---~~-----  193 (310)
                            .++.|..||..+++...... .......++++|+++.++ +.+.++.|..||...+.... ...   ..     
T Consensus       721 ------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  793 (1249)
T 3sfz_A          721 ------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA-SCSADGTLRLWDVRSANERKSINVKRFFLSSEDP  793 (1249)
T ss_dssp             ------TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE-EEESSSEEEEEEGGGTEEEEEEECCCCC------
T ss_pred             ------CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE-EEECCCeEEEEeCCCCcccceecccccccccCCc
Confidence                  37789999998877654333 234467899999999554 44677899999987431100 000   00     


Q ss_pred             --eCCCCCCeeEECCCCCEEEEEecCC
Q 046018          194 --ELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       194 --~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                        ........++++++|...++...+.
T Consensus       794 ~~~~~~~v~~~~~s~dg~~l~~~~~~~  820 (1249)
T 3sfz_A          794 PEDVEVIVKCCSWSADGDKIIVAAKNK  820 (1249)
T ss_dssp             --CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred             cccccceEEEEEECCCCCEEEEEcCCc
Confidence              0112345688999998877766543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.32  E-value=1.6e-05  Score=75.99  Aligned_cols=95  Identities=9%  Similarity=0.051  Sum_probs=64.2

Q ss_pred             eceEEEeCCCCc-EEEEEC---------CCceEEEeCCCCeE---EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCc
Q 046018           49 PLGIRFDKKTGD-LYIADA---------YLGFQVVGPEGGLA---TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS  115 (310)
Q Consensus        49 p~gl~~d~~~g~-l~v~~~---------~~gi~~~d~~~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~  115 (310)
                      ...+++++ +|+ |.++..         ...|+.+|.++++.   .++    .    .....++++|||++|.++.    
T Consensus        62 ~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~----~~~~~~~~SPDG~~la~~~----  128 (719)
T 1z68_A           62 ASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----P----RPIQYLCWSPVGSKLAYVY----  128 (719)
T ss_dssp             CSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----C----SSBCCEEECSSTTCEEEEE----
T ss_pred             eeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----C----cccccceECCCCCEEEEEE----
Confidence            56789999 666 444433         13488889988875   222    1    2467899999999666664    


Q ss_pred             hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc-------------------ccceEEEecCCCeEEEEec
Q 046018          116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA-------------------FANGVALSRDRTFILIAET  171 (310)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-------------------~~~gi~~~~d~~~lyv~~~  171 (310)
                                     .+.|+.++.++++...+.....                   ...+++|+|||+.|+++..
T Consensus       129 ---------------~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          129 ---------------QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             ---------------TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             ---------------CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence                           5689999988776655432221                   1148999999998876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.31  E-value=7e-06  Score=76.57  Aligned_cols=173  Identities=14%  Similarity=0.063  Sum_probs=101.8

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEEC-C----CceEEEeCCCCeEEE
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADA-Y----LGFQVVGPEGGLATQ   82 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~-~----~gi~~~d~~~~~~~~   82 (310)
                      .+..|.++.+.  ++.........+|..+.+...+.....  ..+++++ +|+.++... .    ..|+.+|.++++.+.
T Consensus       113 ~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~  189 (582)
T 3o4h_A          113 RILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  189 (582)
T ss_dssp             EEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEE
T ss_pred             eeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceE
Confidence            35566666654  443333333445554422122221111  5788999 777655332 2    238999998888765


Q ss_pred             EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEE---
Q 046018           83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVA---  158 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~---  158 (310)
                      +...     ....+.++++|||++|+.++..                ....|++||.++++.+ +.... .....++   
T Consensus       190 l~~~-----~~~~~~~~~SpDG~~l~~~~~~----------------~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          190 FDSG-----EGSFSSASISPGMKVTAGLETA----------------REARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             ECCS-----SCEEEEEEECTTSCEEEEEECS----------------SCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             eecC-----CCccccceECCCCCEEEEccCC----------------CeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence            5221     1235789999999966633311                1237999999988877 43332 2234556   


Q ss_pred             -----EecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018          159 -----LSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       159 -----~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~  216 (310)
                           ++|||+ +|++....+.+.+|+. +.    .  .....+....++++ +|++++....
T Consensus       248 ~~~~~~spdg~-~~~~~~~~g~~~l~~~-g~----~--~~~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          248 ITWLGYLPDGR-LAVVARREGRSAVFID-GE----R--VEAPQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EEEEEECTTSC-EEEEEEETTEEEEEET-TE----E--ECCCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             ccceeEcCCCc-EEEEEEcCCcEEEEEE-CC----e--eccCCCceEEEEec-CCEEEEEEcC
Confidence                 999994 7777677788888887 32    1  11112334567888 8877665443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.31  E-value=0.00013  Score=65.28  Aligned_cols=149  Identities=7%  Similarity=0.039  Sum_probs=92.4

Q ss_pred             ceeceEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .+...|+++|.++++.++.. .+.|..+|.+++....+... .+ ....+.+|+++| +++ ++++.+.           
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~g-H~~~V~~l~f~p~~~~-~l~s~s~-----------  185 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IG-AGGSITGLKFNPLNTN-QFYASSM-----------  185 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CS-SSCCCCEEEECSSCTT-EEEEECS-----------
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cC-CCCCEEEEEEeCCCCC-EEEEEeC-----------
Confidence            34668999985555554444 44588888876654333221 11 123578999997 677 5555533           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCc---ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLA---FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN  201 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~---~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~  201 (310)
                            ++.|..||.+++..+.+.....   ....++++|+++. +++....+.|..||.++....   .+..-......
T Consensus       186 ------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~dg~i~~wd~~~~~~~---~~~~h~~~v~~  255 (435)
T 4e54_B          186 ------EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM-VVTGDNVGNVILLNMDGKELW---NLRMHKKKVTH  255 (435)
T ss_dssp             ------SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE-EEEECSSSBEEEEESSSCBCC---CSBCCSSCEEE
T ss_pred             ------CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE-EEEEeCCCcEeeeccCcceeE---EEecccceEEe
Confidence                  7889999998776665543222   2357899999984 445567889999998754221   11111123467


Q ss_pred             eEECCCCC-EEEEEecCCc
Q 046018          202 VRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       202 i~~d~~G~-l~va~~~~~~  219 (310)
                      +++++++. +.++....+.
T Consensus       256 v~~~p~~~~~~~s~s~d~~  274 (435)
T 4e54_B          256 VALNPCCDWFLATASVDQT  274 (435)
T ss_dssp             EEECTTCSSEEEEEETTSB
T ss_pred             eeecCCCceEEEEecCcce
Confidence            88998885 5544444443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.29  E-value=7.6e-05  Score=67.58  Aligned_cols=124  Identities=17%  Similarity=0.162  Sum_probs=76.6

Q ss_pred             ceeceEEEeCC---CCcEEEEECC-------------CceEEEeCCC---C-----eEEEEEeecCCccccCCcceEEeC
Q 046018           47 GRPLGIRFDKK---TGDLYIADAY-------------LGFQVVGPEG---G-----LATQLVTEAAGQPLRFTNDLDIDE  102 (310)
Q Consensus        47 ~~p~gl~~d~~---~g~l~v~~~~-------------~gi~~~d~~~---~-----~~~~~~~~~~~~~~~~~~~i~~d~  102 (310)
                      ..+.||+++++   ++.|||+...             ..|.|+..+.   .     ..+.+.........+....|+++|
T Consensus        69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp  148 (463)
T 2wg3_C           69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP  148 (463)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT
T ss_pred             CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC
Confidence            56789999983   4789998642             2476664432   1     223344433223456778899999


Q ss_pred             CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC--------------------eEEEEecCCcccceEEEecC
Q 046018          103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK--------------------EVTILLQGLAFANGVALSRD  162 (310)
Q Consensus       103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------------------~~~~~~~~~~~~~gi~~~~d  162 (310)
                      ||. |||+.-.............-.....|.|+|+++++.                    +.++.+.++..|.|++|+|+
T Consensus       149 DG~-LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~  227 (463)
T 2wg3_C          149 DGF-LYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH  227 (463)
T ss_dssp             TSC-EEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred             CCc-EEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence            999 999974321100000000001234788999999863                    23566778889999999997


Q ss_pred             -----CC-eEEEEec
Q 046018          163 -----RT-FILIAET  171 (310)
Q Consensus       163 -----~~-~lyv~~~  171 (310)
                           |+ ++|.++.
T Consensus       228 tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          228 PTDININLTILCSDS  242 (463)
T ss_dssp             CSSTTCSEEEEEECC
T ss_pred             CCCcccceEEEeccc
Confidence                 33 4677775

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.29  E-value=7.8e-06  Score=71.74  Aligned_cols=170  Identities=8%  Similarity=-0.048  Sum_probs=95.8

Q ss_pred             ccccccccCCCCCccccccceeceEEEeC-CCCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEE
Q 046018           28 TSQRKECVRPFAPDIEHICGRPLGIRFDK-KTGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI  100 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~  100 (310)
                      .+..+|..+.+...+.........+++++ +...|.++...      ..|+.+|.+++..+.+...   ........+++
T Consensus       169 ~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~  245 (388)
T 3pe7_A          169 RLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFW  245 (388)
T ss_dssp             EEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEE
T ss_pred             eEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcccccceE
Confidence            34445554433222222223455788887 55556554432      2588999887765544321   11112446789


Q ss_pred             eCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC------cccceEEEecCCCeEEEEe----
Q 046018          101 DEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL------AFANGVALSRDRTFILIAE----  170 (310)
Q Consensus       101 d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~------~~~~gi~~~~d~~~lyv~~----  170 (310)
                      +|||++|++.....             +.....|+.||+++++.+.+....      ..+.+++++|||+.|+++.    
T Consensus       246 spdg~~l~~~~~~~-------------~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  312 (388)
T 3pe7_A          246 VPDGSALVYVSYLK-------------GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS  312 (388)
T ss_dssp             CTTSSCEEEEEEET-------------TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred             CCCCCEEEEEecCC-------------CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence            99998675543210             111235999999988776543211      1266789999999877653    


Q ss_pred             ----cCCceEEEEEccCCCCCcceeeeeCCC-----------CCCeeEECCCCC-EEEEEec
Q 046018          171 ----TSNCRILRFWLHGPNSGKQDVFAELPG-----------FPDNVRSNSNGE-FWVALHA  216 (310)
Q Consensus       171 ----~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------~p~~i~~d~~G~-l~va~~~  216 (310)
                          .....|++++++++.   ...+.....           ....+++++||+ |+++...
T Consensus       313 ~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~  371 (388)
T 3pe7_A          313 GYKIENDPFLYVFNMKNGT---QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV  371 (388)
T ss_dssp             ----CCCCEEEEEETTTTE---EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             ccccCCCCEEEEEeccCCc---eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence                445689999987642   233333222           245678999996 4444433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.29  E-value=0.00015  Score=69.89  Aligned_cols=151  Identities=13%  Similarity=0.044  Sum_probs=89.4

Q ss_pred             ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC--CCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH--KGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~--g~~l~v~~~~~~~~~~~~~~  123 (310)
                      +....+++++ +|+ |..+...+.|..+|..++........ .+ ....+.+++++++  ++ +.++..           
T Consensus        10 ~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~-h~~~V~~l~~s~~~~~~-~l~s~s-----------   74 (753)
T 3jro_A           10 ELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTL-TG-HEGPVWRVDWAHPKFGT-ILASCS-----------   74 (753)
T ss_dssp             CCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEE-CC-CSSCEEEEEECCTTSCS-EEEEEE-----------
T ss_pred             ceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceec-cC-CcCceEEEEecCCCCCC-EEEEEe-----------
Confidence            5566788988 555 44444444477777764433322221 11 1224678899877  88 444442           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEE---ecCCcccceEEEecC--CCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTIL---LQGLAFANGVALSRD--RTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~---~~~~~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                            .+|.|..||..+++....   .........++++|+  ++.++ +...++.|.+|+...........+...+..
T Consensus        75 ------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~-sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~  147 (753)
T 3jro_A           75 ------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL-VASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (753)
T ss_dssp             ------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE-EEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred             ------CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEE-EEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence                  278899999887763322   222344678999999  77444 446788999999875422222222222233


Q ss_pred             CCeeEECC-------------CCCEEEEEecCCc
Q 046018          199 PDNVRSNS-------------NGEFWVALHAKKG  219 (310)
Q Consensus       199 p~~i~~d~-------------~G~l~va~~~~~~  219 (310)
                      ...+++++             +|.+.++....+.
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~  181 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNL  181 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence            45677777             4665565555554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.28  E-value=4.1e-05  Score=66.15  Aligned_cols=172  Identities=10%  Similarity=0.098  Sum_probs=97.6

Q ss_pred             eccccccccCCCCCccccccceeceEEEeCC---CC----cEEEEECC--C-c--eEEEeCCCCeEEEEEee--cCCccc
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKK---TG----DLYIADAY--L-G--FQVVGPEGGLATQLVTE--AAGQPL   92 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~---~g----~l~v~~~~--~-g--i~~~d~~~~~~~~~~~~--~~~~~~   92 (310)
                      .+|..||..+...+.+  ..++++++.+-++   .|    .+++++..  . .  ++.+|++++.++.+...  +.....
T Consensus        50 ~gL~Vydl~G~~l~~~--~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~  127 (355)
T 3amr_A           50 SGLVVYSLDGKMLHSY--NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAI  127 (355)
T ss_dssp             TEEEEEETTSCEEEEE--CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCC
T ss_pred             CCEEEEcCCCcEEEEc--cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCC
Confidence            5788888877332222  1256676655440   11    24666654  3 2  56668888776554221  101223


Q ss_pred             cCCcceEE--eCC-CC-EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC---CCCeE--E--EEecCCcccceEEEec
Q 046018           93 RFTNDLDI--DEH-KG-VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK---TTKEV--T--ILLQGLAFANGVALSR  161 (310)
Q Consensus        93 ~~~~~i~~--d~~-g~-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~~~~~--~--~~~~~~~~~~gi~~~~  161 (310)
                      ..|.++|.  ++. |+ ++|+++                  +.|.+..|+.   ..++.  +  .-......|.|+++++
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~------------------k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd  189 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTG------------------KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD  189 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEEC------------------SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET
T ss_pred             CCeeEEEEEecCCCCcEEEEEEC------------------CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC
Confidence            67899998  774 54 355554                  3566666543   22322  1  1223456789999999


Q ss_pred             CCCeEEEEecCCceEEEEEccCCCCCcceeeee-----CCCCCCeeEE--CCCC--CEEEEEecCCc
Q 046018          162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-----LPGFPDNVRS--NSNG--EFWVALHAKKG  219 (310)
Q Consensus       162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~--d~~G--~l~va~~~~~~  219 (310)
                      ...+||+++.. ..||+|+.+.........+..     +...+.||++  .++|  .|++++..++.
T Consensus       190 ~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          190 EYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             TTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             CCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            88889999877 569999965322112222222     2235788888  4444  46666655544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.28  E-value=0.00015  Score=61.88  Aligned_cols=167  Identities=8%  Similarity=0.038  Sum_probs=101.1

Q ss_pred             eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC--------------CceEEEeCCCCeEEEEEeecCCccc
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY--------------LGFQVVGPEGGLATQLVTEAAGQPL   92 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~--------------~gi~~~d~~~~~~~~~~~~~~~~~~   92 (310)
                      ..|++++..+...+.+.  ...+..|..+  ++.||.+...              ..|++++.+++..+.+...      
T Consensus        37 ~~ly~~~~dg~~~~~l~--~~~~~~i~~~--g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~------  106 (302)
T 3s25_A           37 GRLYAMNIDGSNIHKLS--NDTAMYINAD--KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD------  106 (302)
T ss_dssp             TEEEEEETTSCSCEEEE--EEEEEEEEEC--SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS------
T ss_pred             ceEEEEcCCCCCCEEcc--CCceeeEEEc--CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC------
Confidence            45777766663322222  2345566554  5678777643              2499999998876555321      


Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS  172 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~  172 (310)
                         ...+++++|++||+++..              ......|++.+.++...+.+.....    ++++++++.||+++..
T Consensus       107 ---~~~~~s~~g~~Iy~~~~~--------------~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g  165 (302)
T 3s25_A          107 ---PCIYASLIGNYIYYLHYD--------------TQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPK  165 (302)
T ss_dssp             ---CEEEEEEETTEEEEEEES--------------SSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTT
T ss_pred             ---CccEEEEeCCEEEEEeec--------------CCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCC
Confidence               123566677789998710              0125679999998766666654332    4578899999999887


Q ss_pred             CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC-CEEEEEecCCccceeeeeeccccccE
Q 046018          173 NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWLGKT  234 (310)
Q Consensus       173 ~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~  234 (310)
                      ..+|++.++++..   .+.+..   .+..+.+.|+| .||.+.+..+..    |.+...+|..
T Consensus       166 ~~~Iy~~~l~g~~---~~~l~~---~~~~~~~~P~g~~iy~t~~~~~~~----I~~~~ldG~~  218 (302)
T 3s25_A          166 NGQLYRYDTASQS---EALFYD---CNCYKPVVLDDTNVYYMDVNRDNA----IVHVNINNPN  218 (302)
T ss_dssp             TCCEEEEETTTTE---EEEEEC---SCEEEEEEEETTEEEEEEGGGTTE----EEEECSSSCC
T ss_pred             CceEEEEECCCCC---EEEEeC---CCccceeeecCCEEEEEEcCCCcE----EEEEECCCCC
Confidence            8899999988642   223322   12234455544 677766654321    4444445443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.27  E-value=8.8e-05  Score=63.97  Aligned_cols=152  Identities=7%  Similarity=-0.002  Sum_probs=94.2

Q ss_pred             ceeceEEEeCC----CCcEEEEECCCceEEEeCCCCeEEEEEeec-CCccccCCcceEEeCC----CCEEEEEeCCCchh
Q 046018           47 GRPLGIRFDKK----TGDLYIADAYLGFQVVGPEGGLATQLVTEA-AGQPLRFTNDLDIDEH----KGVIYFTDSSTSFQ  117 (310)
Q Consensus        47 ~~p~gl~~d~~----~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~----g~~l~v~~~~~~~~  117 (310)
                      .....++++|.    +..++++...+.|..+|..++......... .......+..+++.++    |+.|+.+.      
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~------   92 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG------   92 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE------
T ss_pred             CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec------
Confidence            56678999862    233555555556788887755432222221 1112235778899988    66344443      


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeee--
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFA--  193 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~--  193 (310)
                                  .++.|..||..+++...... .......++++| +++ ++++...++.|.+||...+.  ....+.  
T Consensus        93 ------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~  157 (366)
T 3k26_A           93 ------------SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDT--LVAIFGGV  157 (366)
T ss_dssp             ------------TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTE--EEEEECST
T ss_pred             ------------CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCe--EEEEeccc
Confidence                        37889999988776554333 344568999999 777 45555678899999987431  112221  


Q ss_pred             -eCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          194 -ELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       194 -~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                       ........++++++|++.++....+.
T Consensus       158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~  184 (366)
T 3k26_A          158 EGHRDEVLSADYDLLGEKIMSCGMDHS  184 (366)
T ss_dssp             TSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccCceeEEEECCCCCEEEEecCCCC
Confidence             12234567899999987777666554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.27  E-value=0.0015  Score=61.30  Aligned_cols=113  Identities=11%  Similarity=0.097  Sum_probs=74.5

Q ss_pred             ceeceEEEeCCCCc--EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD--LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~--l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .....+++++ ++.  |..+...+.|..+|..+++.......    ....+++++++|+|+ ++++...           
T Consensus       148 ~~v~~v~f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~----H~~~V~~v~fspdg~-~las~s~-----------  210 (611)
T 1nr0_A          148 RAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----HTKFVHSVRYNPDGS-LFASTGG-----------  210 (611)
T ss_dssp             SCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECC----CSSCEEEEEECTTSS-EEEEEET-----------
T ss_pred             CCceEEEECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeecc----ccCceEEEEECCCCC-EEEEEEC-----------
Confidence            3456788888 553  44443444477778776654332221    123578999999999 6665532           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEe-c-------CCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILL-Q-------GLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~-~-------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                            ++.|..||..+++..... .       .......++++||++.| ++...++.|.+||...
T Consensus       211 ------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          211 ------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-ASASADKTIKIWNVAT  270 (611)
T ss_dssp             ------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE-EEEETTSEEEEEETTT
T ss_pred             ------CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEE-EEEeCCCeEEEEeCCC
Confidence                  788999998777654433 1       12235789999999854 4556778999999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.27  E-value=0.00028  Score=62.82  Aligned_cols=150  Identities=13%  Similarity=0.129  Sum_probs=85.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCe-----------EEEEEeecCCcc---------ccCCcceEEeCCC-
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGL-----------ATQLVTEAAGQP---------LRFTNDLDIDEHK-  104 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~-----------~~~~~~~~~~~~---------~~~~~~i~~d~~g-  104 (310)
                      .....+++++ +|++.++.... .|..++..++.           ....... ....         ...+.++++.|++ 
T Consensus        29 ~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           29 DIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             CcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCCC
Confidence            5677899999 77665554444 47777776554           1111111 1100         0347889999998 


Q ss_pred             -CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEE--------------------------------------
Q 046018          105 -GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVT--------------------------------------  145 (310)
Q Consensus       105 -~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~--------------------------------------  145 (310)
                       . .+++...                 ++.|..|+..++...                                      
T Consensus       107 ~~-~l~s~s~-----------------d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (447)
T 3dw8_B          107 AA-QFLLSTN-----------------DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP  168 (447)
T ss_dssp             SS-EEEEEEC-----------------SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred             cc-eEEEeCC-----------------CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence             6 4444422                 667777776543321                                      


Q ss_pred             --EEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee-------eeCCCCCCeeEECCCC-CEEEEE
Q 046018          146 --ILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF-------AELPGFPDNVRSNSNG-EFWVAL  214 (310)
Q Consensus       146 --~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~p~~i~~d~~G-~l~va~  214 (310)
                        .+.. .......++++|+++.|..+  .++.|.+||+..... ....+       .........++++++| ++.++.
T Consensus       169 ~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          169 RRIFANAHTYHINSISINSDYETYLSA--DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             EEEECSCCSSCCCEEEECTTSSEEEEE--CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             eEEeccCCCcceEEEEEcCCCCEEEEe--CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence              1111 12235689999999855544  588999999862100 01111       1112335678999998 777776


Q ss_pred             ecCCc
Q 046018          215 HAKKG  219 (310)
Q Consensus       215 ~~~~~  219 (310)
                      ...+.
T Consensus       246 ~~dg~  250 (447)
T 3dw8_B          246 SSKGT  250 (447)
T ss_dssp             ETTSC
T ss_pred             eCCCe
Confidence            66554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.26  E-value=3.1e-05  Score=66.39  Aligned_cols=147  Identities=10%  Similarity=-0.043  Sum_probs=89.8

Q ss_pred             ceeceEEEeCCCCc--EEEEECCCceEEEeC-CCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGD--LYIADAYLGFQVVGP-EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~--l~v~~~~~gi~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ..+..+++++ +++  |+++...+.|..+|. ++++...+...   .....+..+++++ ++.++.+.            
T Consensus        57 ~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~------------  119 (342)
T 1yfq_A           57 HPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAAS------------  119 (342)
T ss_dssp             SCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEEE------------
T ss_pred             CceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEEc------------
Confidence            4567899998 566  555555555889998 87765433210   0123567899999 88344443            


Q ss_pred             hhhcCCCCceEEEEeCCC---------CeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC-CCCCcceeee
Q 046018          124 SILSGDKTGRLLKYEKTT---------KEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG-PNSGKQDVFA  193 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~---------~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~-~~~~~~~~~~  193 (310)
                            .++.|..||..+         ++..........+..+++++++  ++++ ...+.|..|+... ..........
T Consensus       120 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~~~~~~  190 (342)
T 1yfq_A          120 ------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNGTIEES  190 (342)
T ss_dssp             ------TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCCEEEEC
T ss_pred             ------CCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEE-eCCCeEEEEECCccccccceeeec
Confidence                  267888888653         2211111222345788998876  5554 6678999999875 3221111111


Q ss_pred             eCCCCCCeeEECC-CCCEEEEEecCCc
Q 046018          194 ELPGFPDNVRSNS-NGEFWVALHAKKG  219 (310)
Q Consensus       194 ~~~~~p~~i~~d~-~G~l~va~~~~~~  219 (310)
                      ........+++++ +|+++++....+.
T Consensus       191 ~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          191 GLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             SCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             CCCCceeEEEECCCCCCEEEEEecCCc
Confidence            2234457889999 8987777666554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.26  E-value=0.00038  Score=60.20  Aligned_cols=151  Identities=10%  Similarity=0.108  Sum_probs=91.2

Q ss_pred             ceeceEEEeCC-CCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC--CCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKK-TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH--KGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~-~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~--g~~l~v~~~~~~~~~~~~~  122 (310)
                      .....+++.++ +++++++... +.|..+|.++++...+.... . ....+..++++|+  ++.++++.           
T Consensus        56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~l~~~~-----------  122 (379)
T 3jrp_A           56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-V-HSASVNSVQWAPHEYGPLLLVAS-----------  122 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC-C-CSSCEEEEEECCGGGCSEEEEEE-----------
T ss_pred             CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec-C-CCcceEEEEeCCCCCCCEEEEec-----------
Confidence            45567888762 1555544444 44888888877643332221 1 1235788999999  88444444           


Q ss_pred             hhhhcCCCCceEEEEeCCCCe---EEEEecCCcccceEEEec-------------CCCeEEEEecCCceEEEEEccCCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKE---VTILLQGLAFANGVALSR-------------DRTFILIAETSNCRILRFWLHGPNS  186 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~---~~~~~~~~~~~~gi~~~~-------------d~~~lyv~~~~~~~i~~~~~~~~~~  186 (310)
                             .++.|..||..++.   ...+.........++++|             +++.+ ++...++.|.+||......
T Consensus       123 -------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~  194 (379)
T 3jrp_A          123 -------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF-VTGGADNLVKIWKYNSDAQ  194 (379)
T ss_dssp             -------TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE-EEEETTSCEEEEEEETTTT
T ss_pred             -------CCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE-EEEeCCCeEEEEEecCCCc
Confidence                   27789999987652   222223334467899999             57744 4446778999999874321


Q ss_pred             CcceeeeeC---CCCCCeeEECCC---CCEEEEEecCCc
Q 046018          187 GKQDVFAEL---PGFPDNVRSNSN---GEFWVALHAKKG  219 (310)
Q Consensus       187 ~~~~~~~~~---~~~p~~i~~d~~---G~l~va~~~~~~  219 (310)
                       ........   ......++++++   |++.++....+.
T Consensus       195 -~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          195 -TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             -EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             -ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence             11122222   233467899999   777676665554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.25  E-value=0.0015  Score=58.10  Aligned_cols=103  Identities=10%  Similarity=0.143  Sum_probs=66.5

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe-EEEEe--------cCCcccceEEEecCC-
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE-VTILL--------QGLAFANGVALSRDR-  163 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~~--------~~~~~~~gi~~~~d~-  163 (310)
                      .+.+++++|+|+ ++++. .                 ++.|..||..+.. .....        ........++++|++ 
T Consensus       179 ~v~~~~~~~~~~-~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  239 (447)
T 3dw8_B          179 HINSISINSDYE-TYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC  239 (447)
T ss_dssp             CCCEEEECTTSS-EEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred             ceEEEEEcCCCC-EEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence            578899999999 66554 2                 7889999987322 22111        112235789999998 


Q ss_pred             CeEEEEecCCceEEEEEccCCCCC--cceeeeeCCC------------CCCeeEECCCCCEEEEEec
Q 046018          164 TFILIAETSNCRILRFWLHGPNSG--KQDVFAELPG------------FPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       164 ~~lyv~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~------------~p~~i~~d~~G~l~va~~~  216 (310)
                      + ++++...++.|.+||...+...  ....+.....            ....++++++|++.++...
T Consensus       240 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          240 N-TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             T-EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             c-EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            6 5555577889999998754321  0122222111            3467899999988777666

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.25  E-value=0.00085  Score=57.16  Aligned_cols=147  Identities=9%  Similarity=0.060  Sum_probs=84.5

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCE-EEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGV-IYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~-l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....+...+....|..+...+.+..+|............   ........+++.+++.. ++++..              
T Consensus       130 ~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s~~--------------  192 (340)
T 4aow_A          130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE---SHSEWVSCVRFSPNSSNPIIVSCG--------------  192 (340)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS---SCSSCEEEEEECSCSSSCEEEEEE--------------
T ss_pred             ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec---cccCcccceEEccCCCCcEEEEEc--------------
Confidence            344566666333444444444577778776543222111   11223456666655321 444432              


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                         .++.|..||..+++........ .....++++||++.| ++...++.|.+||.....  ....+ ........+++.
T Consensus       193 ---~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~  265 (340)
T 4aow_A          193 ---WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC-ASGGKDGQAMLWDLNEGK--HLYTL-DGGDIINALCFS  265 (340)
T ss_dssp             ---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTCEEEEEETTTTE--EEEEE-ECSSCEEEEEEC
T ss_pred             ---CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEEeccCc--eeeee-cCCceEEeeecC
Confidence               2677999999887765544332 345789999999854 455677899999987431  11111 122334667888


Q ss_pred             CCCCEEEEEecCC
Q 046018          206 SNGEFWVALHAKK  218 (310)
Q Consensus       206 ~~G~l~va~~~~~  218 (310)
                      +++.+.++..++.
T Consensus       266 ~~~~~~~~~~d~~  278 (340)
T 4aow_A          266 PNRYWLCAATGPS  278 (340)
T ss_dssp             SSSSEEEEEETTE
T ss_pred             CCCceeeccCCCE
Confidence            8888877765543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.22  E-value=0.00022  Score=61.30  Aligned_cols=147  Identities=14%  Similarity=0.014  Sum_probs=83.8

Q ss_pred             ceeceEEEeCCC---CcEEEEECCCceEEEeCCCCe-EEEEEeecCCccccCCcce------EEeCCCCEEEEEeCCCch
Q 046018           47 GRPLGIRFDKKT---GDLYIADAYLGFQVVGPEGGL-ATQLVTEAAGQPLRFTNDL------DIDEHKGVIYFTDSSTSF  116 (310)
Q Consensus        47 ~~p~gl~~d~~~---g~l~v~~~~~gi~~~d~~~~~-~~~~~~~~~~~~~~~~~~i------~~d~~g~~l~v~~~~~~~  116 (310)
                      .....++++++.   ..|+.+...+.|..+|.++++ .......    ....+..+      +++++++ .+++..    
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~s~~~~-~l~~~~----  136 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG----HKEIINAIDGIGGLGIGEGAP-EIVTGS----  136 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC----CSSCEEEEEEESGGGCC-CCC-EEEEEE----
T ss_pred             CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe----cccceEEEeeccccccCCCcc-EEEEEe----
Confidence            455688898842   445555555558888888765 2212111    11124444      4578898 444432    


Q ss_pred             hhhhhhhhhhcCCCCceEEEEeCCCCe--EEEEecCCc----ccceEE----EecCCCeEEEEecCCceEEEEEccCCCC
Q 046018          117 QRRQFMSSILSGDKTGRLLKYEKTTKE--VTILLQGLA----FANGVA----LSRDRTFILIAETSNCRILRFWLHGPNS  186 (310)
Q Consensus       117 ~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~----~~~gi~----~~~d~~~lyv~~~~~~~i~~~~~~~~~~  186 (310)
                                   .++.|..||..+++  ...+.....    ....++    ++++++.++.+ ..++.|..||..... 
T Consensus       137 -------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~-  201 (357)
T 3i2n_A          137 -------------RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG-YDNGDIKLFDLRNMA-  201 (357)
T ss_dssp             -------------TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE-ETTSEEEEEETTTTE-
T ss_pred             -------------CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE-ccCCeEEEEECccCc-
Confidence                         27789999987664  222221111    234455    67898855544 667899999987532 


Q ss_pred             CcceeeeeCCCCCCeeEECC---CCCEEEEEecCCc
Q 046018          187 GKQDVFAELPGFPDNVRSNS---NGEFWVALHAKKG  219 (310)
Q Consensus       187 ~~~~~~~~~~~~p~~i~~d~---~G~l~va~~~~~~  219 (310)
                        .............+++++   ++++.++....+.
T Consensus       202 --~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          202 --LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             --EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred             --eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence              112222334567889998   7876666655554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.21  E-value=0.00013  Score=64.15  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=79.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCC---ccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAG---QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      .....+++++ ++..+++....+ |..+|.++++..........   .....+..++++|+|+ +.++...         
T Consensus       250 ~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~---------  318 (380)
T 3iz6_a          250 GDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYS---------  318 (380)
T ss_dssp             SCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECT---------
T ss_pred             CCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC-EEEEEEC---------
Confidence            4567899999 777776666655 88889988865444332111   1122467899999999 5555432         


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEec----C-CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQ----G-LAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~----~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                              +|.|..||..+++......    . ......++++||++. +++.+.++.|.+|+..+
T Consensus       319 --------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          319 --------NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA-LCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             --------TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE-EEEECTTSCEEEEECCS
T ss_pred             --------CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE-EEEeeCCCCEEEEecCC
Confidence                    7889999987766543221    1 223578999999994 55557789999999764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.21  E-value=0.00089  Score=56.80  Aligned_cols=152  Identities=8%  Similarity=-0.089  Sum_probs=87.0

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCe--EEEEEeecCCccccCCcceEEeC--CCCEEEEEeCCCchhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGL--ATQLVTEAAGQPLRFTNDLDIDE--HKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~--~~~~~~~~~~~~~~~~~~i~~d~--~g~~l~v~~~~~~~~~~~  120 (310)
                      ......+++++ +++++++.... .|..+|.+++.  .+..... .+ ....+..+++.+  +++ ++++..        
T Consensus        11 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~d~~-~l~s~~--------   78 (351)
T 3f3f_A           11 DDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RA-HDSSIVAIDWASPEYGR-IIASAS--------   78 (351)
T ss_dssp             SSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-EC-CSSCEEEEEECCGGGCS-EEEEEE--------
T ss_pred             ccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceeccee-cc-CCCcEEEEEEcCCCCCC-EEEEEc--------
Confidence            35677899999 66655544444 47777766542  1211111 11 122467899988  588 444432        


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCe----------EEEEecCCcccceEEEecC--CCeEEEEecCCceEEEEEccCCCC-C
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKE----------VTILLQGLAFANGVALSRD--RTFILIAETSNCRILRFWLHGPNS-G  187 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~----------~~~~~~~~~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~~~~~~~-~  187 (310)
                               .++.|..||..+++          ...+.........++++|+  ++.++. ...++.|..||...... .
T Consensus        79 ---------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           79 ---------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             ---------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTCEEEEEECSSTTCTT
T ss_pred             ---------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChHHhc
Confidence                     26788889887652          2222223344678999999  885554 46778999999874321 1


Q ss_pred             ccee---eeeC-------CCCCCeeEECCC---CCEEEEEecCCc
Q 046018          188 KQDV---FAEL-------PGFPDNVRSNSN---GEFWVALHAKKG  219 (310)
Q Consensus       188 ~~~~---~~~~-------~~~p~~i~~d~~---G~l~va~~~~~~  219 (310)
                      ....   ....       ......+.+.++   +.++++....+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  193 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA  193 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence            1111   0000       122355777776   666666555554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.21  E-value=0.0011  Score=55.84  Aligned_cols=116  Identities=13%  Similarity=0.070  Sum_probs=70.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeC--CCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE--HKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....+++++ +|+..++....+ |..+|.++...+.+... .+ -...++++++.+  +|+ ++++.+.          
T Consensus        10 ~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~g-H~~~V~~v~~s~~~~g~-~l~s~s~----------   75 (297)
T 2pm7_B           10 EMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTL-TG-HEGPVWRVDWAHPKFGT-ILASCSY----------   75 (297)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CC-CSSCEEEEEECCGGGCS-EEEEEET----------
T ss_pred             CceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEE-cc-ccCCeEEEEecCCCcCC-EEEEEcC----------
Confidence            3456789999 777665555444 77777764321111111 11 112467788865  378 5555432          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEE---EEecCCcccceEEEecC--CCeEEEEecCCceEEEEEccCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVT---ILLQGLAFANGVALSRD--RTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~---~~~~~~~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                             ++.|..||..+++..   .+.......+.++++|+  +. ++++.+.++.|.+|+....
T Consensus        76 -------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           76 -------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             -------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSS
T ss_pred             -------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCC
Confidence                   788999998776422   22222234678999997  66 4455567889999998743

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.18  E-value=0.0022  Score=54.46  Aligned_cols=148  Identities=8%  Similarity=0.076  Sum_probs=88.5

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ +|++.++....+ |..++............    .......+...++++ .+++..             
T Consensus        87 ~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~l~s~s-------------  147 (340)
T 4aow_A           87 HFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVG----HTKDVLSVAFSSDNR-QIVSGS-------------  147 (340)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC----CSSCEEEEEECTTSS-CEEEEE-------------
T ss_pred             CCEEEEEECC-CCCEEEEEcccccceEEeecccceeeeecC----CCCceeEEEEeecCc-cceeec-------------
Confidence            4566899999 776555544444 77778877654433222    112345667788888 444432             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC--CcccceEEEecCCCe-EEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG--LAFANGVALSRDRTF-ILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~--~~~~~gi~~~~d~~~-lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                          .++.+..||............  ......+++++++.. ++++....+.|..|+......  ...+..-.+....+
T Consensus       148 ----~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~  221 (340)
T 4aow_A          148 ----RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTV  221 (340)
T ss_dssp             ----TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEE
T ss_pred             ----CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce--eeEecCCCCcEEEE
Confidence                267788898865544333211  223457788877543 556666778999999764311  11121112334678


Q ss_pred             EECCCCCEEEEEecCCc
Q 046018          203 RSNSNGEFWVALHAKKG  219 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~  219 (310)
                      +++++|++.++....+.
T Consensus       222 ~~s~~~~~l~s~s~Dg~  238 (340)
T 4aow_A          222 TVSPDGSLCASGGKDGQ  238 (340)
T ss_dssp             EECTTSSEEEEEETTCE
T ss_pred             EECCCCCEEEEEeCCCe
Confidence            99999988777666554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.16  E-value=5.8e-05  Score=75.44  Aligned_cols=141  Identities=11%  Similarity=0.055  Sum_probs=91.8

Q ss_pred             eeceEEEeCCCCcEEEEECCCceE-EEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQ-VVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~-~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .+..++++ +...|+.+.....++ .++.++++.+.+. .    ....+..++++|+|++|+++.               
T Consensus       339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~----~~~~~~~~~~SpDG~~la~~~---------------  397 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-E----NLGNVFAMGVDRNGKFAVVAN---------------  397 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-C----CCCSEEEEEECTTSSEEEEEE---------------
T ss_pred             eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-C----CccceeeeEECCCCCEEEEEC---------------
Confidence            44566666 344566655544588 7888877655442 1    123567899999999666655               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCC---------ceEEEEEccCCCCCcceeeeeCC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSN---------CRILRFWLHGPNSGKQDVFAELP  196 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~  196 (310)
                         ..+.|+.||.++++...+..... ....++++|||++|.++....         ..|++||.+++.   ...+....
T Consensus       398 ---~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~  471 (1045)
T 1k32_A          398 ---DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTEN  471 (1045)
T ss_dssp             ---TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSS
T ss_pred             ---CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEeeCCC
Confidence               25689999999888776653333 347899999999876664432         589999987532   22222222


Q ss_pred             CCCCeeEECCCCC-EEEEEe
Q 046018          197 GFPDNVRSNSNGE-FWVALH  215 (310)
Q Consensus       197 ~~p~~i~~d~~G~-l~va~~  215 (310)
                      .....++++++|+ |+++..
T Consensus       472 ~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          472 SHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             SBEEEEEECTTSCEEEEEES
T ss_pred             cccCCceEcCCCCEEEEEec
Confidence            2345688999996 555554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.16  E-value=0.00074  Score=56.73  Aligned_cols=157  Identities=11%  Similarity=0.058  Sum_probs=91.4

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....++++  ++.|+.+...+.|..+|  .+........    ....+..+++.+ +++.++++.              
T Consensus       105 ~~i~~~~~~--~~~l~~~~~d~~i~~~d--~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~--------------  162 (313)
T 3odt_A          105 GNVCSLSFQ--DGVVISGSWDKTAKVWK--EGSLVYNLQA----HNASVWDAKVVSFSENKFLTAS--------------  162 (313)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSEEEEEE--TTEEEEEEEC----CSSCEEEEEEEETTTTEEEEEE--------------
T ss_pred             cCEEEEEec--CCEEEEEeCCCCEEEEc--CCcEEEeccc----CCCceeEEEEccCCCCEEEEEE--------------
Confidence            445567774  34566665555577788  3333222221    112456777777 788444444              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          .++.|..||.. .....+.. .......++++|++. ++ +...++.|.+||...+.  ....+....+....+++
T Consensus       163 ----~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~  233 (313)
T 3odt_A          163 ----ADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-FI-SCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKL  233 (313)
T ss_dssp             ----TTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-EE-EEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEE
T ss_pred             ----CCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-EE-EccCCCeEEEEECCchh--hhhhhhcCCceEEEEEE
Confidence                26789999943 22333332 334467899999987 44 44677899999987431  11222222334577999


Q ss_pred             CCCCCEEEEEecCCccceeeeeecc-ccccEEeeccc
Q 046018          205 NSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPL  240 (310)
Q Consensus       205 d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~  240 (310)
                      +++|.|+.+..++.      +..++ ..++.+..+..
T Consensus       234 ~~~~~l~~~~~dg~------v~iwd~~~~~~~~~~~~  264 (313)
T 3odt_A          234 LPNGDIVSCGEDRT------VRIWSKENGSLKQVITL  264 (313)
T ss_dssp             CTTSCEEEEETTSE------EEEECTTTCCEEEEEEC
T ss_pred             ecCCCEEEEecCCE------EEEEECCCCceeEEEec
Confidence            99997666654433      44444 45665555433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.13  E-value=0.00017  Score=72.17  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=90.2

Q ss_pred             eeceEEEe-CCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           48 RPLGIRFD-KKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        48 ~p~gl~~d-~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .+..++++ + +|+ |.++. ...|+.++..++....+..    .....+..++++ +|++++++..             
T Consensus       297 ~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~s-dg~~l~~~s~-------------  356 (1045)
T 1k32_A          297 SKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPE----PLRIRYVRRGGD-TKVAFIHGTR-------------  356 (1045)
T ss_dssp             GGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSC----CSCEEEEEECSS-SEEEEEEEET-------------
T ss_pred             ccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccC----CCcceEEeeeEc-CCCeEEEEEC-------------
Confidence            46689999 8 665 55544 4458888888776543311    111135567788 8876666541             


Q ss_pred             hcCCCCceEE-EEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCCCCCeeE
Q 046018          126 LSGDKTGRLL-KYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPGFPDNVR  203 (310)
Q Consensus       126 ~~~~~~g~v~-~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~  203 (310)
                           ...++ .++.++++.+.+.........++++|||+.|+++ ...+.|+++|..++.   ...+. ...+....++
T Consensus       357 -----~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~-~~~~~v~~~d~~tg~---~~~~~~~~~~~v~~~~  427 (1045)
T 1k32_A          357 -----EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGK---PTVIERSREAMITDFT  427 (1045)
T ss_dssp             -----TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC---EEEEEECSSSCCCCEE
T ss_pred             -----CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEE-CCCCeEEEEECCCCc---eEEeccCCCCCccceE
Confidence                 45788 8999887766655333456789999999977766 456799999987542   22222 2223347899


Q ss_pred             ECCCCCEEEEE
Q 046018          204 SNSNGEFWVAL  214 (310)
Q Consensus       204 ~d~~G~l~va~  214 (310)
                      +++||+..+..
T Consensus       428 ~SpDG~~la~~  438 (1045)
T 1k32_A          428 ISDNSRFIAYG  438 (1045)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ECCCCCeEEEE
Confidence            99999854433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.13  E-value=0.0011  Score=63.75  Aligned_cols=95  Identities=7%  Similarity=-0.017  Sum_probs=61.4

Q ss_pred             eEEEeCCCCc-EEEEECC---------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           51 GIRFDKKTGD-LYIADAY---------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        51 gl~~d~~~g~-l~v~~~~---------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      .+++++ +|+ |.++...         ..++.+|.++++.+++...     .......+++|||++|.++.         
T Consensus        66 ~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~-----~~~~~~~~~SPdG~~la~~~---------  130 (740)
T 4a5s_A           66 DYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERI-----PNNTQWVTWSPVGHKLAYVW---------  130 (740)
T ss_dssp             EEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-----CTTEEEEEECSSTTCEEEEE---------
T ss_pred             ceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccC-----CCcceeeEECCCCCEEEEEE---------
Confidence            478899 665 5444431         1267889998876543211     12356788999999776664         


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCeEEEEecCC-------------------cccceEEEecCCCeEEEEe
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGL-------------------AFANGVALSRDRTFILIAE  170 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-------------------~~~~gi~~~~d~~~lyv~~  170 (310)
                                .+.|+.++.++++...+....                   ....+++|+|||+.|.++.
T Consensus       131 ----------~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          131 ----------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             ----------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             ----------CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence                      567999998877765543221                   1123588999999876653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.12  E-value=0.0002  Score=61.88  Aligned_cols=138  Identities=10%  Similarity=0.184  Sum_probs=82.4

Q ss_pred             CCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC----CC---EEEEEeCCCchhhhhhhhhhhcCC
Q 046018           58 TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH----KG---VIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        58 ~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~----g~---~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      ...+++++.. .|++.+|.++..+..+ .   .   ..+|++.+-++    |+   .+++++..               +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~-~---~---g~~nnVD~r~~~~l~g~~~dla~as~R~---------------~   96 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSY-N---T---GKLNNVDIRYDFPLNGKKVDIAAASNRS---------------E   96 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEE-C---C---SCEEEEEEEEEEEETTEEEEEEEEEECS---------------T
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEc-c---C---CCcccEEEecccccCCceEeEEEEeCCC---------------C
Confidence            3456666655 5799999976554433 1   1   24566665542    11   24555521               0


Q ss_pred             CCceE--EEEeCCCCeEEEEe-------cCCcccceEEE--ecC-CC-eEEEEecCCceEEEEEccCCCC--Ccceeeee
Q 046018          130 KTGRL--LKYEKTTKEVTILL-------QGLAFANGVAL--SRD-RT-FILIAETSNCRILRFWLHGPNS--GKQDVFAE  194 (310)
Q Consensus       130 ~~g~v--~~~d~~~~~~~~~~-------~~~~~~~gi~~--~~d-~~-~lyv~~~~~~~i~~~~~~~~~~--~~~~~~~~  194 (310)
                      ..++|  +.+|++++.++.+.       .....|.|+|+  +++ ++ ++|+++ .++.+..|++.....  -..+.+..
T Consensus        97 ~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~~lVR~  175 (355)
T 3amr_A           97 GKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISGKKVRA  175 (355)
T ss_dssp             TCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccceEEEE
Confidence            13444  55588887776652       22367899999  664 43 467664 458999987742111  12233333


Q ss_pred             --CCCCCCeeEECC-CCCEEEEEecCC
Q 046018          195 --LPGFPDNVRSNS-NGEFWVALHAKK  218 (310)
Q Consensus       195 --~~~~p~~i~~d~-~G~l~va~~~~~  218 (310)
                        +++.|.++++|+ .|.||++....+
T Consensus       176 f~lgsq~EgcvvDd~~g~Lyv~eEd~G  202 (355)
T 3amr_A          176 FKMNSQTEGMAADDEYGRLYIAEEDEA  202 (355)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTTE
T ss_pred             ecCCCCcceEEEcCCCCeEEEecccce
Confidence              567789999985 579999998755

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.10  E-value=0.00041  Score=59.66  Aligned_cols=59  Identities=10%  Similarity=0.094  Sum_probs=37.8

Q ss_pred             ceeceEEEeCCCCcE-EEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEE--eCCCCEEEEEe
Q 046018           47 GRPLGIRFDKKTGDL-YIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI--DEHKGVIYFTD  111 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l-~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~--d~~g~~l~v~~  111 (310)
                      .....+++++ +++. +.+...+.|..+|.++++...+...     ...+..+++  +++++.++.+.
T Consensus        87 ~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A           87 GPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEEE
T ss_pred             CCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEcc
Confidence            4567899999 6654 4444444588889998876544221     124677888  88888444443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.08  E-value=0.0003  Score=67.78  Aligned_cols=151  Identities=10%  Similarity=0.105  Sum_probs=91.4

Q ss_pred             ceeceEEEeCC-CCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC--CCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKK-TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH--KGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~-~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~--g~~l~v~~~~~~~~~~~~~  122 (310)
                      .....++++++ ++++.++... +.|..+|.+++......... . ....+..++++|+  ++.++++.           
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~-h~~~V~~v~~sp~~~~~~l~sgs-----------  120 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-V-HSASVNSVQWAPHEYGPLLLVAS-----------  120 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC-C-CSSCEEEEEECCGGGCSEEEEEE-----------
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc-C-CCCCeEEEEECCCCCCCEEEEEe-----------
Confidence            45668888773 1555554444 44888888877643332221 1 1235788999999  88444443           


Q ss_pred             hhhhcCCCCceEEEEeCCCCe---EEEEecCCcccceEEEec-------------CCCeEEEEecCCceEEEEEccCCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKE---VTILLQGLAFANGVALSR-------------DRTFILIAETSNCRILRFWLHGPNS  186 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~---~~~~~~~~~~~~gi~~~~-------------d~~~lyv~~~~~~~i~~~~~~~~~~  186 (310)
                             .+|.|..||..++.   ...+.........++++|             +++.++ +...++.|..||...+..
T Consensus       121 -------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~-sgs~dg~I~iwd~~~~~~  192 (753)
T 3jro_A          121 -------SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV-TGGADNLVKIWKYNSDAQ  192 (753)
T ss_dssp             -------TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE-EEETTSCEEEEEEETTTT
T ss_pred             -------CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE-EEECCCeEEEEeccCCcc
Confidence                   37889999987652   222223334467888988             466444 446778999999875321


Q ss_pred             CcceeeeeC---CCCCCeeEECCC---CCEEEEEecCCc
Q 046018          187 GKQDVFAEL---PGFPDNVRSNSN---GEFWVALHAKKG  219 (310)
Q Consensus       187 ~~~~~~~~~---~~~p~~i~~d~~---G~l~va~~~~~~  219 (310)
                       ........   .+....++++++   |++.++....+.
T Consensus       193 -~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          193 -TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             -EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred             -cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence             11222221   233567899999   777776665554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.08  E-value=0.00084  Score=64.46  Aligned_cols=123  Identities=11%  Similarity=-0.003  Sum_probs=79.8

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccc-cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPL-RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ...+++.+ +|++++.. .+.|..+|..+++.+.+......... ...++++++|||++|.++.....         +..
T Consensus        19 ~~~~~w~~-dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~---------~~r   87 (740)
T 4a5s_A           19 LYSLRWIS-DHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK---------QWR   87 (740)
T ss_dssp             CCCEEECS-SSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE---------CSS
T ss_pred             ccccEECC-CCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee---------eEE
Confidence            34688888 77766665 44589999998887655443211111 12345889999997777653110         000


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ....+.++.||.++++.+.+..........+++|||+.|.++.  ++.|++++..++
T Consensus        88 ~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~  142 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (740)
T ss_dssp             SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCC
Confidence            1124678999999988765543333456789999999776652  478999987654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.05  E-value=0.0017  Score=55.04  Aligned_cols=149  Identities=10%  Similarity=0.037  Sum_probs=82.8

Q ss_pred             ceeceEEEeCC-CCcEEEEECC-CceEEEeCCCCeE-------EEEEeecCCccccCCcceEEeCC--CCEEEEEeCCCc
Q 046018           47 GRPLGIRFDKK-TGDLYIADAY-LGFQVVGPEGGLA-------TQLVTEAAGQPLRFTNDLDIDEH--KGVIYFTDSSTS  115 (310)
Q Consensus        47 ~~p~gl~~d~~-~g~l~v~~~~-~gi~~~d~~~~~~-------~~~~~~~~~~~~~~~~~i~~d~~--g~~l~v~~~~~~  115 (310)
                      ..+..+++.+. +++++++... +.|..+|.+++..       ..+... .. ....+.+++++|+  ++.++.+.    
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~~----  131 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-ND-SKGSLYSVKFAPAHLGLKLACLG----  131 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEE----
T ss_pred             CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cc-cCCceeEEEEcCCCCCcEEEEec----
Confidence            45668888873 2555544444 4477778776521       112111 11 1235778999999  88444443    


Q ss_pred             hhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-------Ee-------cCCcccceEEEecC---CCeEEEEecCCceEEE
Q 046018          116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-------LL-------QGLAFANGVALSRD---RTFILIAETSNCRILR  178 (310)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-------~~-------~~~~~~~gi~~~~d---~~~lyv~~~~~~~i~~  178 (310)
                                    .++.|..||..+++...       ..       ........++++|+   ++.++++ ..++.+..
T Consensus       132 --------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~  196 (351)
T 3f3f_A          132 --------------NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS-ALEQAIIY  196 (351)
T ss_dssp             --------------TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE-ETTEEEEE
T ss_pred             --------------CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe-cCCCcEEE
Confidence                          27789999976553210       00       11223468899997   7745544 55566644


Q ss_pred             EEccCCCCCcceeeeeCC---CCCCeeEECCCC----CEEEEEecCCc
Q 046018          179 FWLHGPNSGKQDVFAELP---GFPDNVRSNSNG----EFWVALHAKKG  219 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G----~l~va~~~~~~  219 (310)
                      ++....   .........   .....++++++|    ++.++....+.
T Consensus       197 ~~~~~~---~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          197 QRGKDG---KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             EECTTS---CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             EccCCC---ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence            443322   222222222   334678999998    66666655554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.04  E-value=0.0057  Score=54.21  Aligned_cols=144  Identities=10%  Similarity=0.030  Sum_probs=89.5

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      =|++++ ++.|-|+ ..+.|+.+|..+++...+....  .....+.+|+++|+|++|.++.                  .
T Consensus       110 ~l~wS~-~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~--~~~~~V~sv~fspdg~~lasgs------------------~  167 (420)
T 4gga_A          110 LVDWSS-GNVLAVA-LDNSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGNYLAVGT------------------S  167 (420)
T ss_dssp             CEEECT-TSEEEEE-ETTEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSSEEEEEE------------------T
T ss_pred             eEEECC-CCEEEEE-eCCEEEEEECCCCCEEEEEEec--CCCCcEEEEEECCCCCEEEEEE------------------C
Confidence            366766 5544444 4556999999999876654431  1223578999999999444444                  3


Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF  210 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  210 (310)
                      ++.|..||.++++........ ...-.+++.++. ++++....+.+..++...... ....+.........+.+.++|++
T Consensus       168 Dg~v~iWd~~~~~~~~~~~~h-~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~-~~~~~~~h~~~~~~~~~~~~g~~  244 (420)
T 4gga_A          168 SAEVQLWDVQQQKRLRNMTSH-SARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAPDGRH  244 (420)
T ss_dssp             TSCEEEEETTTTEEEEEECCC-SSCEEEEEEETT-EEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCeEEEEEcCCCcEEEEEeCC-CCceEEEeeCCC-EEEEEeCCCceeEeeecccce-eeEEecccccceeeeeecCCCCe
Confidence            788999999888765443322 223345566677 555557788999998764211 11112222233466788888887


Q ss_pred             EEEEecCCc
Q 046018          211 WVALHAKKG  219 (310)
Q Consensus       211 ~va~~~~~~  219 (310)
                      .++....+.
T Consensus       245 l~s~~~D~~  253 (420)
T 4gga_A          245 LASGGNDNL  253 (420)
T ss_dssp             EEEEETTSC
T ss_pred             eeeeecccc
Confidence            776665554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.04  E-value=0.0065  Score=54.35  Aligned_cols=84  Identities=12%  Similarity=0.131  Sum_probs=51.2

Q ss_pred             CceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC
Q 046018          131 TGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE  209 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  209 (310)
                      ++.|..||..+++....... ......++++|+++.++. ...++.|.+||...+.  ....+.........+.++  ++
T Consensus       289 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~  363 (464)
T 3v7d_B          289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRLS--DK  363 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE-EETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEC--SS
T ss_pred             CCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEEc--CC
Confidence            77899999987766543332 334678999999995554 4677899999986431  111121112233556665  45


Q ss_pred             EEEEEecCCc
Q 046018          210 FWVALHAKKG  219 (310)
Q Consensus       210 l~va~~~~~~  219 (310)
                      ..++....+.
T Consensus       364 ~l~s~s~dg~  373 (464)
T 3v7d_B          364 FLVSAAADGS  373 (464)
T ss_dssp             EEEEEETTSE
T ss_pred             EEEEEeCCCc
Confidence            5555544443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.03  E-value=0.00011  Score=62.84  Aligned_cols=160  Identities=12%  Similarity=-0.004  Sum_probs=93.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCC---------CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEG---------GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ  117 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~---------~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~  117 (310)
                      .....+++++ .+.|+.+...+.|..+|.++         ++.  + ....  ....+..+++++++  ++++.      
T Consensus       102 ~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~-~~~~--~~~~v~~~~~~~~~--l~~~~------  167 (342)
T 1yfq_A          102 LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--S-NNTK--VKNKIFTMDTNSSR--LIVGM------  167 (342)
T ss_dssp             SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC--S-SSSS--SCCCEEEEEECSSE--EEEEE------
T ss_pred             CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe--e-eEEe--eCCceEEEEecCCc--EEEEe------
Confidence            4566888888 65666665555577777654         221  1 0111  12246778888776  55554      


Q ss_pred             hhhhhhhhhcCCCCceEEEEeCCC-Ce--EEEEe-cCCcccceEEEec-CCCeEEEEecCCceEEEEEccCC--C--CCc
Q 046018          118 RRQFMSSILSGDKTGRLLKYEKTT-KE--VTILL-QGLAFANGVALSR-DRTFILIAETSNCRILRFWLHGP--N--SGK  188 (310)
Q Consensus       118 ~~~~~~~~~~~~~~g~v~~~d~~~-~~--~~~~~-~~~~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~--~--~~~  188 (310)
                                  .++.|..||..+ +.  ..... ........++++| +++.++++ ..++.|.+|+.+..  .  ...
T Consensus       168 ------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~  234 (342)
T 1yfq_A          168 ------------NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             ------------STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTT
T ss_pred             ------------CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE-ecCCcEEEEEEcCCCccccccc
Confidence                        267899999876 32  22222 2233468899999 99855554 66789999888643  1  011


Q ss_pred             ceeeeeCC---------CCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018          189 QDVFAELP---------GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL  238 (310)
Q Consensus       189 ~~~~~~~~---------~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~  238 (310)
                      ...+....         .....++++++|++.++....+.     +..++ ..++.+..+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-----ISCWNLQTRKKIKNF  289 (342)
T ss_dssp             CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-----EEEEETTTTEEEEEC
T ss_pred             ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-----EEEEcCccHhHhhhh
Confidence            12222211         13467899999976666555554     44444 345555544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.03  E-value=0.00035  Score=66.58  Aligned_cols=157  Identities=8%  Similarity=0.006  Sum_probs=86.8

Q ss_pred             eeceEEEeCCCCcEEEEEC-C----CceEEEeCCCCeEEEEEeecCCcccc-CCcceEEeCCCCEEEEE-eCCCchhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADA-Y----LGFQVVGPEGGLATQLVTEAAGQPLR-FTNDLDIDEHKGVIYFT-DSSTSFQRRQ  120 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~-~----~gi~~~d~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~g~~l~v~-~~~~~~~~~~  120 (310)
                      ....+++++ +|++++... .    ..|+.+|..+++...+.......... .+..++++|||++|++. ......    
T Consensus       256 ~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~----  330 (723)
T 1xfd_A          256 YITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG----  330 (723)
T ss_dssp             EEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS----
T ss_pred             eeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC----
Confidence            455789999 887654432 1    13888899888766554321111110 12478999999977765 321000    


Q ss_pred             hhhhhhcCCCCceEEEEe-CCCCe---EEEEecCCccc-ceEEEecCCCeEEEEecCC--c--eEEEEEccCCCCCccee
Q 046018          121 FMSSILSGDKTGRLLKYE-KTTKE---VTILLQGLAFA-NGVALSRDRTFILIAETSN--C--RILRFWLHGPNSGKQDV  191 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d-~~~~~---~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~--~--~i~~~~~~~~~~~~~~~  191 (310)
                             ......|+.+| .+++.   .+.+....... ..++++||++.||++....  +  .||.++.+++.  ....
T Consensus       331 -------~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~--~~~~  401 (723)
T 1xfd_A          331 -------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF--NRQC  401 (723)
T ss_dssp             -------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC--CCBC
T ss_pred             -------CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC--Ccce
Confidence                   00123689998 45554   44333221122 2368999999988765543  3  45555444321  1122


Q ss_pred             eee-C--CCCCCeeEECCCCCEEEEEecCC
Q 046018          192 FAE-L--PGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       192 ~~~-~--~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      +.. .  ......+.++++|+.++....+.
T Consensus       402 l~~~~~~~~~~~~~~~spdg~~l~~~~~~~  431 (723)
T 1xfd_A          402 LSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (723)
T ss_dssp             SSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             ecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence            221 1  22346789999998777655543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.02  E-value=0.006  Score=54.39  Aligned_cols=154  Identities=10%  Similarity=0.060  Sum_probs=83.6

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ....+++++  +.|.++...+.|..+|.++++........    ...+..+++  +++.++.+.                
T Consensus       201 ~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~--~~~~l~~~~----------------  256 (445)
T 2ovr_B          201 TVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGH----VAAVRCVQY--DGRRVVSGA----------------  256 (445)
T ss_dssp             CEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECC----SSCEEEEEE--CSSCEEEEE----------------
T ss_pred             cEEEEEecC--CEEEEEeCCCEEEEEECCCCcEEEEEcCC----cccEEEEEE--CCCEEEEEc----------------
Confidence            344666654  45666665556888898877654333221    123445555  566355444                


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS  206 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  206 (310)
                        .++.|..||..+++........ .....+++  +++.++.+ ..++.|..||...+..  ...+.........+.+  
T Consensus       257 --~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~--  327 (445)
T 2ovr_B          257 --YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSG-SLDTSIRVWDVETGNC--IHTLTGHQSLTSGMEL--  327 (445)
T ss_dssp             --TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEE-ETTSCEEEEETTTCCE--EEEECCCCSCEEEEEE--
T ss_pred             --CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEE-eCCCeEEEEECCCCCE--EEEEcCCcccEEEEEE--
Confidence              2778999998877654433322 22345555  77755554 6678999999874311  1112111122233444  


Q ss_pred             CCCEEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018          207 NGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLP  239 (310)
Q Consensus       207 ~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~  239 (310)
                      ++++.++....+.     +..++ ..++.+..+.
T Consensus       328 ~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~  356 (445)
T 2ovr_B          328 KDNILVSGNADST-----VKIWDIKTGQCLQTLQ  356 (445)
T ss_dssp             ETTEEEEEETTSC-----EEEEETTTCCEEEEEC
T ss_pred             eCCEEEEEeCCCe-----EEEEECCCCcEEEEEc
Confidence            4556565555554     44443 4566655554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.02  E-value=0.00012  Score=64.09  Aligned_cols=151  Identities=13%  Similarity=0.041  Sum_probs=81.4

Q ss_pred             EEEeCCCC-cEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCC---------Cchhh-hh
Q 046018           52 IRFDKKTG-DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSS---------TSFQR-RQ  120 (310)
Q Consensus        52 l~~d~~~g-~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~---------~~~~~-~~  120 (310)
                      +.+++ +| .|+++.....|+.+|.++++.+.+......          ..++|++|.++...         ..|.. ..
T Consensus        86 ~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~----------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~  154 (396)
T 3c5m_A           86 GFIST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEE----------WKGYGTWVANSDCTKLVGIEILKRDWQPLTS  154 (396)
T ss_dssp             CEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTT----------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             ceECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEecccc----------cCCCCCEEEeccCCccccccccccccCCCCc
Confidence            77888 55 465655555699999988876655442111          22233222221100         00000 00


Q ss_pred             hhhhhh--cCCCCceEEEEeCCCCeEEEEecCCcccceEEEec-CCCeEEEEecCC-----ceEEEEEccCCCCCcceee
Q 046018          121 FMSSIL--SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR-DRTFILIAETSN-----CRILRFWLHGPNSGKQDVF  192 (310)
Q Consensus       121 ~~~~~~--~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~-d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~  192 (310)
                      ++....  .......|+.+|.++++.+.+.........++++| |++.|+++....     ..|+.++.+++..   ..+
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l  231 (396)
T 3c5m_A          155 WEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RKI  231 (396)
T ss_dssp             HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EES
T ss_pred             ceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eEe
Confidence            000000  11245679999998888776654444567889999 777665543322     4799999875421   222


Q ss_pred             ee-CC-CCCCeeEECCCCC-EEEEEec
Q 046018          193 AE-LP-GFPDNVRSNSNGE-FWVALHA  216 (310)
Q Consensus       193 ~~-~~-~~p~~i~~d~~G~-l~va~~~  216 (310)
                      .. .+ ..+..++++++|+ |+++...
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          232 KEHAEGESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             SCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             eccCCCccccceEECCCCCEEEEEecC
Confidence            11 11 1234578999996 5555544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.01  E-value=0.00051  Score=65.61  Aligned_cols=195  Identities=9%  Similarity=0.026  Sum_probs=104.4

Q ss_pred             ccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc----------------eEEEeCCCCeE--EEEEeecCC
Q 046018           28 TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG----------------FQVVGPEGGLA--TQLVTEAAG   89 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g----------------i~~~d~~~~~~--~~~~~~~~~   89 (310)
                      .|..+|..+.+............+++++++...|+++.....                |++++..++..  +.+.... .
T Consensus       152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-~  230 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-D  230 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-T
T ss_pred             EEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC-C
Confidence            455566655332221111122457999993345766654432                88888877642  1222211 1


Q ss_pred             ccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC------C--eEEEEecCCcccceEEEec
Q 046018           90 QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT------K--EVTILLQGLAFANGVALSR  161 (310)
Q Consensus        90 ~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~------~--~~~~~~~~~~~~~gi~~~~  161 (310)
                       ......+++++|||++|+++....             ......|+.+|.++      +  ..+.+..... .....+++
T Consensus       231 -~~~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~  295 (710)
T 2xdw_A          231 -EPKWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQESNGITGILKWVKLIDNFE-GEYDYVTN  295 (710)
T ss_dssp             -CTTCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-SCEEEEEE
T ss_pred             -CCeEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECcccccccCCccceEEeeCCCC-cEEEEEec
Confidence             011345788999999777765321             00145799999875      4  3454443322 23345889


Q ss_pred             CCCeEEEEecC---CceEEEEEccCCCCCcceeeee-CC-CCCCeeEECCCCCEEEEEecCCccceeeeeeccc-cccEE
Q 046018          162 DRTFILIAETS---NCRILRFWLHGPNSGKQDVFAE-LP-GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSW-LGKTL  235 (310)
Q Consensus       162 d~~~lyv~~~~---~~~i~~~~~~~~~~~~~~~~~~-~~-~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~-~g~~~  235 (310)
                      ||+.||+....   +..|++++.+++.....+.+.. .+ ....++.+.+++.|+++....+..  + +...+. .|+.+
T Consensus       296 dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~--~-l~~~~~~~g~~~  372 (710)
T 2xdw_A          296 EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN--T-LQLHDLATGALL  372 (710)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE--E-EEEEETTTCCEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE--E-EEEEECCCCCEE
Confidence            99988886443   3479999987542111222222 21 123456666667777766554421  1 344443 56655


Q ss_pred             eeccch
Q 046018          236 LKLPLS  241 (310)
Q Consensus       236 ~~~~~~  241 (310)
                      ..+..+
T Consensus       373 ~~l~~~  378 (710)
T 2xdw_A          373 KIFPLE  378 (710)
T ss_dssp             EEECCC
T ss_pred             EecCCC
Confidence            555544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.00  E-value=0.00011  Score=66.54  Aligned_cols=165  Identities=16%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             ccccceeceEEEeCCCC--cEEEEECCCceEEEeCCCCeE-EEEEeec----CC---ccccCCcceEEeCC----CCEEE
Q 046018           43 EHICGRPLGIRFDKKTG--DLYIADAYLGFQVVGPEGGLA-TQLVTEA----AG---QPLRFTNDLDIDEH----KGVIY  108 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g--~l~v~~~~~gi~~~d~~~~~~-~~~~~~~----~~---~~~~~~~~i~~d~~----g~~l~  108 (310)
                      ..-...|.+|++.+ +|  +|||+...+.|.+++.++... +.+....    .+   .....+.+|+++|+    +. ||
T Consensus        10 a~gL~~P~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~-lY   87 (463)
T 2wg3_C           10 VSGLRQPVGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK-LY   87 (463)
T ss_dssp             EEEESSEEEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE-EE
T ss_pred             ccCCCCceEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCE-EE
Confidence            33457899999999 66  599998876788888765421 1222221    01   01234678999986    65 99


Q ss_pred             EEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC--------eEEEEec-----CCcccceEEEecCCCeEEEEecC---
Q 046018          109 FTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK--------EVTILLQ-----GLAFANGVALSRDRTFILIAETS---  172 (310)
Q Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~-----~~~~~~gi~~~~d~~~lyv~~~~---  172 (310)
                      ++.+...-...     .-......+|.+|..+.+        +.+++..     .......|+|.|||. |||+.-.   
T Consensus        88 v~yt~~~~~~~-----~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd~~~  161 (463)
T 2wg3_C           88 VSYTTNQERWA-----IGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGDGMI  161 (463)
T ss_dssp             EEEEECCCSSC-----SSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECCTTC
T ss_pred             EEEeCCCCCcc-----cCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCCCCC
Confidence            98632100000     000000136777764321        1222221     122346799999997 9997321   


Q ss_pred             --------------CceEEEEEccCCC------C-----------CcceeeeeCCCCCCeeEECCC-----CCEEE--EE
Q 046018          173 --------------NCRILRFWLHGPN------S-----------GKQDVFAELPGFPDNVRSNSN-----GEFWV--AL  214 (310)
Q Consensus       173 --------------~~~i~~~~~~~~~------~-----------~~~~~~~~~~~~p~~i~~d~~-----G~l~v--a~  214 (310)
                                    .++|.++++++..      .           ...++++.--..|.++++|+.     |+||+  ++
T Consensus       162 ~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D  241 (463)
T 2wg3_C          162 TLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSD  241 (463)
T ss_dssp             CHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEEC
T ss_pred             CCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecc
Confidence                          3679999998731      0           012344432346899999997     65544  55


Q ss_pred             e
Q 046018          215 H  215 (310)
Q Consensus       215 ~  215 (310)
                      .
T Consensus       242 ~  242 (463)
T 2wg3_C          242 S  242 (463)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.00086  Score=59.65  Aligned_cols=163  Identities=9%  Similarity=0.089  Sum_probs=88.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCC---Ce-EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEG---GL-ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~---~~-~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      .....+++++.++.++++....+ |..+|..+   +. ........   ....+.++++.++++.|+.+.          
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s----------  130 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD---CSSTVTQITMIPNFDAFAVSS----------  130 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE---CSSCEEEEEECTTSSEEEEEE----------
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc---CCCCEEEEEEeCCCCEEEEEe----------
Confidence            56778999883444444444444 77777654   22 10011100   122578899999999444443          


Q ss_pred             hhhhhcCCCCceEEEEeCC---CCeEEEEec-------------CCcccceEE--EecCCCeEEEEecCCceEEEEEccC
Q 046018          122 MSSILSGDKTGRLLKYEKT---TKEVTILLQ-------------GLAFANGVA--LSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~---~~~~~~~~~-------------~~~~~~gi~--~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                              .++.|..||.+   +++......             .......+.  ++++++ ++++...++.|.+||+..
T Consensus       131 --------~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          131 --------KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             --------TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTT
T ss_pred             --------CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Confidence                    26778888763   232221110             111122333  446777 444556789999999874


Q ss_pred             CCCCcceeeee--CCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018          184 PNSGKQDVFAE--LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL  238 (310)
Q Consensus       184 ~~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~  238 (310)
                      ...  ...+..  -.+....++++++|++.++....+.     +..++ ..++.+..+
T Consensus       202 ~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~  252 (437)
T 3gre_A          202 LER--LQIIENSPRHGAVSSICIDEECCVLILGTTRGI-----IDIWDIRFNVLIRSW  252 (437)
T ss_dssp             CCE--EEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-----EEEEETTTTEEEEEE
T ss_pred             Cee--eEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-----EEEEEcCCccEEEEE
Confidence            321  122221  1234577899999987776666554     33333 445555544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.99  E-value=0.0078  Score=53.64  Aligned_cols=221  Identities=10%  Similarity=0.056  Sum_probs=109.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....+++++  +.|+.+...+.|..+|.++++.......    ....+..++++  ++.++.+.               
T Consensus       160 ~~v~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~--~~~l~s~s---------------  216 (445)
T 2ovr_B          160 GGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYG----HTSTVRCMHLH--EKRVVSGS---------------  216 (445)
T ss_dssp             SCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEEE--TTEEEEEE---------------
T ss_pred             CCEEEEEecC--CEEEEEeCCCeEEEEECCcCcEEEEECC----CCCcEEEEEec--CCEEEEEe---------------
Confidence            3445677753  4556665555688899988865433221    11234556664  45355444               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN  205 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  205 (310)
                         .++.|..||..+++....... ......+++  +++.++.+ ..++.|..||...+..  ...+.........+.+ 
T Consensus       217 ---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~-  287 (445)
T 2ovr_B          217 ---RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG-AYDFMVKVWDPETETC--LHTLQGHTNRVYSLQF-  287 (445)
T ss_dssp             ---TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEE-ETTSCEEEEEGGGTEE--EEEECCCSSCEEEEEE-
T ss_pred             ---CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEE-cCCCEEEEEECCCCcE--eEEecCCCCceEEEEE-
Confidence               378899999887765443322 233455665  66655544 6778999999864311  1111111122344555 


Q ss_pred             CCCCEEEEEecCCccceeeeeecc-ccccEEeeccchhhhhcccccC------CCCceEEEEECC-CCCEEEEEEcCCCC
Q 046018          206 SNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLSFRQLHSLLVG------GKPHATAIKLSE-KGEVLEVLEDCEGK  277 (310)
Q Consensus       206 ~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~-~g~~~~~~~~~~g~  277 (310)
                       +|+..++....+.     +..++ ..++.+..+.........+.+.      +..+..+..+|. +++.+..+..+.+ 
T Consensus       288 -~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-  360 (445)
T 2ovr_B          288 -DGIHVVSGSLDTS-----IRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK-  360 (445)
T ss_dssp             -CSSEEEEEETTSC-----EEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTS-
T ss_pred             -CCCEEEEEeCCCe-----EEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCC-
Confidence             5655555544444     34433 4555554443222211111111      111111222232 3444444432111 


Q ss_pred             eecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          278 TLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       278 ~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      ....++.+...+..|..|+. +..|.+++.
T Consensus       361 ~~~~v~~~~~~~~~l~s~~~-dg~v~iwd~  389 (445)
T 2ovr_B          361 HQSAVTCLQFNKNFVITSSD-DGTVKLWDL  389 (445)
T ss_dssp             CSSCEEEEEECSSEEEEEET-TSEEEEEET
T ss_pred             CCCCEEEEEECCCEEEEEeC-CCeEEEEEC
Confidence            11234555555556666654 666777764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.99  E-value=0.0029  Score=54.23  Aligned_cols=116  Identities=8%  Similarity=0.049  Sum_probs=77.1

Q ss_pred             cceeceEEEeCCC--CcEEEEECC-CceEEEeCCC-CeEE-EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           46 CGRPLGIRFDKKT--GDLYIADAY-LGFQVVGPEG-GLAT-QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        46 ~~~p~gl~~d~~~--g~l~v~~~~-~gi~~~d~~~-~~~~-~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      ......++++++.  |++.++... +.|..+|.++ +... .....    ....+..++++|++++|+.+.         
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~~---------  105 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM----HTGPVLDVCWSDDGSKVFTAS---------  105 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE----CSSCEEEEEECTTSSEEEEEE---------
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc----ccCCEEEEEECcCCCEEEEEc---------
Confidence            3567789999943  455555444 4477777775 3322 22221    122578899999999444443         


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEE--ecCCCeEEEEecCCceEEEEEccCC
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVAL--SRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~--~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                               .++.|..||..+++.............+++  +++++.+ ++...++.|.+||...+
T Consensus       106 ---------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          106 ---------CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV-MTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             ---------TTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEE-EEEETTSEEEEECSSCS
T ss_pred             ---------CCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEE-EEccCCCcEEEEECCCC
Confidence                     278899999998877665544455688999  8888744 44467789999998743

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.98  E-value=0.00061  Score=62.77  Aligned_cols=147  Identities=5%  Similarity=-0.124  Sum_probs=89.9

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEeecCCccccCCcce--EEeCCC-CEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDL--DIDEHK-GVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i--~~d~~g-~~l~v~~~~~~~~~~~~~  122 (310)
                      .....+++++ ++.|..+...+.|..+|.+++.. ......    -...+++|  +..++| + ++++.+.         
T Consensus       267 ~~v~sv~~s~-~~~lasgs~DgtV~lWD~~~~~~~~~~~~~----H~~~V~sv~~~~s~~g~~-~laS~S~---------  331 (524)
T 2j04_B          267 SLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYDQV----HDSYILSVSTAYSDFEDT-VVSTVAV---------  331 (524)
T ss_dssp             TCEEEEEESS-SSEEEEEETTSEEEEEETTBCSSCSEEEEC----SSSCEEEEEEECCTTSCC-EEEEEET---------
T ss_pred             CCEEEEEecC-CCeEEEEeCCCEEEEEECCCCCCceEEeec----ccccEEEEEEEcCCCCCe-EEEEecc---------
Confidence            4556788887 66666665555588889876532 111111    11245677  456777 7 6666543         


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEE-EEec--CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVT-ILLQ--GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP  199 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~-~~~~--~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  199 (310)
                              ++.|..||..+++.. .+..  .......++++|+++ .+++....+.|..||+.....  ...+..-.+..
T Consensus       332 --------D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~--~~~l~gH~~~V  400 (524)
T 2j04_B          332 --------DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFA--VHPLVSRETTI  400 (524)
T ss_dssp             --------TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTC--CEEEEECSSCE
T ss_pred             --------CCeEEEEECCCCCcccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccccc--ceeeecCCCce
Confidence                    788999998654321 1111  111246799999998 456656778999999874321  12232222345


Q ss_pred             CeeEECCCCCEEEEEecCCc
Q 046018          200 DNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       200 ~~i~~d~~G~l~va~~~~~~  219 (310)
                      ..++++++|.+.++....+.
T Consensus       401 ~sva~Sp~g~~l~Sgs~Dgt  420 (524)
T 2j04_B          401 TAIGVSRLHPMVLAGSADGS  420 (524)
T ss_dssp             EEEECCSSCCBCEEEETTTE
T ss_pred             EEEEeCCCCCeEEEEECCCE
Confidence            78899999987777666554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.97  E-value=0.0081  Score=53.19  Aligned_cols=140  Identities=11%  Similarity=0.024  Sum_probs=81.0

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +|++.++... +.|..+|.++++.......      +...-.+++.+++ +.++..             
T Consensus       148 ~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~------h~~~v~~~s~~~~-~l~sgs-------------  206 (420)
T 4gga_A          148 EYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTS------HSARVGSLSWNSY-ILSSGS-------------  206 (420)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC------CSSCEEEEEEETT-EEEEEE-------------
T ss_pred             CcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeC------CCCceEEEeeCCC-EEEEEe-------------
Confidence            3467899999 6665554444 4588889988875433221      1223344556677 555543             


Q ss_pred             hcCCCCceEEEEeCCCCeE--EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcc--eeeeeCCCCCCe
Q 046018          126 LSGDKTGRLLKYEKTTKEV--TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQ--DVFAELPGFPDN  201 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~--~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~p~~  201 (310)
                          .++.+..+|......  ..+........++.+.++++.+ ++....+.|.+++...+.....  .......+....
T Consensus       207 ----~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l-~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~  281 (420)
T 4gga_A          207 ----RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA  281 (420)
T ss_dssp             ----TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEE
T ss_pred             ----CCCceeEeeecccceeeEEecccccceeeeeecCCCCee-eeeeccccceEEeeccccccceeeeeecccCCceee
Confidence                267788888654332  2333334456789999999854 4446778999998864322111  111111223355


Q ss_pred             eEECCCC-CEEE
Q 046018          202 VRSNSNG-EFWV  212 (310)
Q Consensus       202 i~~d~~G-~l~v  212 (310)
                      +++.+.+ ++.+
T Consensus       282 ~~~~p~~~~~la  293 (420)
T 4gga_A          282 VAWCPWQSNVLA  293 (420)
T ss_dssp             EEECTTCTTEEE
T ss_pred             eeeCCCcccEEE
Confidence            6777765 4443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.94  E-value=0.00071  Score=63.83  Aligned_cols=153  Identities=8%  Similarity=-0.054  Sum_probs=90.2

Q ss_pred             EEEEeCCCCC-eEEEEE----------eccccccccC------CCCCccc-cccceeceEEEeCCCCc-EEEEECC----
Q 046018           11 ILKWQGDELG-WTEFAV----------TTSQRKECVR------PFAPDIE-HICGRPLGIRFDKKTGD-LYIADAY----   67 (310)
Q Consensus        11 i~~~~~~~~~-W~~~~~----------~~~~~~~~~~------~~~~~~~-~~~~~p~gl~~d~~~g~-l~v~~~~----   67 (310)
                      -..|.++.+. .+....          ..+..++..+      .....+. ........+++++ +|+ |+++...    
T Consensus       134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~  212 (662)
T 3azo_A          134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRM  212 (662)
T ss_dssp             EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCC
T ss_pred             CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEECCCCCC
Confidence            3567776664 222222          4566777655      3323333 3234566789999 664 5544422    


Q ss_pred             ----CceEEEeCC-CC---eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC
Q 046018           68 ----LGFQVVGPE-GG---LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK  139 (310)
Q Consensus        68 ----~gi~~~d~~-~~---~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~  139 (310)
                          ..|+.+|.+ ++   +.+.+...    ....+..++++|||+ ++++....               ....|+++|.
T Consensus       213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~----~~~~~~~~~~spdg~-l~~~~~~~---------------~~~~l~~~~~  272 (662)
T 3azo_A          213 PWEGTELKTARVTEDGRFADTRTLLGG----PEEAIAQAEWAPDGS-LIVATDRT---------------GWWNLHRVDP  272 (662)
T ss_dssp             TTTCEEEEEEEECTTSCEEEEEEEEEE----TTBCEEEEEECTTSC-EEEEECTT---------------SSCEEEEECT
T ss_pred             CCCCcEEEEEEECCCCcccccEEeCCC----CCceEcceEECCCCe-EEEEECCC---------------CCeEEEEEEC
Confidence                248888888 46   44444322    112466789999999 77776431               1337999998


Q ss_pred             CCCeEEEEecCCcc---------cceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          140 TTKEVTILLQGLAF---------ANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       140 ~~~~~~~~~~~~~~---------~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ++++.+.+......         ...++++++++.++.+......|++++.+++
T Consensus       273 ~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~  326 (662)
T 3azo_A          273 ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG  326 (662)
T ss_dssp             TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT
T ss_pred             CCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC
Confidence            77777665432111         3468888888855554334446777776643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.94  E-value=0.013  Score=54.48  Aligned_cols=85  Identities=12%  Similarity=0.016  Sum_probs=44.1

Q ss_pred             ceEEeCCCCEEEEEeCCCc-hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-------cccceEEE---ecCCC-
Q 046018           97 DLDIDEHKGVIYFTDSSTS-FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-------AFANGVAL---SRDRT-  164 (310)
Q Consensus        97 ~i~~d~~g~~l~v~~~~~~-~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-------~~~~gi~~---~~d~~-  164 (310)
                      .+++|++...+|++..... |.......   .....+.|+.+|+++|+........       ..+...++   ..||+ 
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~g---d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~  315 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPG---DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKM  315 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCS---CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCC---CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcE
Confidence            4678887665888764210 11100000   0001346999999999876433211       01122222   23664 


Q ss_pred             -eEEEEecCCceEEEEEccCC
Q 046018          165 -FILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       165 -~lyv~~~~~~~i~~~~~~~~  184 (310)
                       .+++....++.|+.+|..++
T Consensus       316 ~~~v~~~~~~G~l~~lD~~tG  336 (571)
T 2ad6_A          316 TPLLSHIDRNGILYTLNRENG  336 (571)
T ss_dssp             EEEEEEECTTSEEEEEETTTC
T ss_pred             EEEEEEeCCCcEEEEEECCCC
Confidence             34444466788999887643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.93  E-value=0.0017  Score=56.58  Aligned_cols=154  Identities=8%  Similarity=-0.027  Sum_probs=92.5

Q ss_pred             cceeceEEEeC-CCCcEEEEECCCceEEEeCCCCeEEEEEee------c---CCccccCCcceEEeC-CCCEEEEEeCCC
Q 046018           46 CGRPLGIRFDK-KTGDLYIADAYLGFQVVGPEGGLATQLVTE------A---AGQPLRFTNDLDIDE-HKGVIYFTDSST  114 (310)
Q Consensus        46 ~~~p~gl~~d~-~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~------~---~~~~~~~~~~i~~d~-~g~~l~v~~~~~  114 (310)
                      ......+++++ +...|..+...+.|..+|.+++........      .   .......+..+++.| +++ ++++..  
T Consensus        43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~~--  119 (408)
T 4a11_B           43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG-MFTSSS--  119 (408)
T ss_dssp             SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT-CEEEEE--
T ss_pred             CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc-EEEEEe--
Confidence            35667899988 444455555445588888876543211110      0   011223567889999 666 555442  


Q ss_pred             chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCC--eEEEEecCCceEEEEEccCCCCCcceee
Q 046018          115 SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRT--FILIAETSNCRILRFWLHGPNSGKQDVF  192 (310)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~--~lyv~~~~~~~i~~~~~~~~~~~~~~~~  192 (310)
                                     .++.|..||..+++.............+++.+.+.  .++++...++.|.+|+...+..  ...+
T Consensus       120 ---------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~  182 (408)
T 4a11_B          120 ---------------FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC--SHIL  182 (408)
T ss_dssp             ---------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC--CEEE
T ss_pred             ---------------CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce--eeee
Confidence                           27889999998887665554444567788887432  1444456778999999874321  1222


Q ss_pred             eeCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          193 AELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       193 ~~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      ....+....+++.++|. ++++....+.
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~  210 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSR  210 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCc
Confidence            22223456789999986 5655555444

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.93  E-value=0.0066  Score=50.92  Aligned_cols=111  Identities=10%  Similarity=0.001  Sum_probs=68.2

Q ss_pred             eeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....+++++ +++..++....+ |..++.++++.......      +.....++..+++ +.++...             
T Consensus        69 ~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~------h~~~~~~~~~~~~-~l~s~~~-------------  127 (318)
T 4ggc_A           69 YISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTS------HSARVGSLSWNSY-ILSSGSR-------------  127 (318)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEEC------CSSCEEEEEEETT-EEEEEET-------------
T ss_pred             eEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecC------ccceEEEeecCCC-EEEEEec-------------
Confidence            456899999 666655545444 78889998875433221      2233445666677 5544422             


Q ss_pred             cCCCCceEEEEeCCCCeE--EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          127 SGDKTGRLLKYEKTTKEV--TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~--~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                          .+.+..++...+..  ..+.........+++.++++.+ ++...++.|.+||...+
T Consensus       128 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          128 ----SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             ----TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSCEEEEESSCB
T ss_pred             ----CCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEE-EEEecCcceeEEECCCC
Confidence                55666666554432  2233334446778889999854 45567789999998743

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.92  E-value=0.00084  Score=56.64  Aligned_cols=151  Identities=8%  Similarity=0.056  Sum_probs=84.0

Q ss_pred             ceeceEEEeCCC-CcEEEEECC-CceEEEeCCCCe-E-EEEEeecCCccccCCcceEEeCC-------------CCEEEE
Q 046018           47 GRPLGIRFDKKT-GDLYIADAY-LGFQVVGPEGGL-A-TQLVTEAAGQPLRFTNDLDIDEH-------------KGVIYF  109 (310)
Q Consensus        47 ~~p~gl~~d~~~-g~l~v~~~~-~gi~~~d~~~~~-~-~~~~~~~~~~~~~~~~~i~~d~~-------------g~~l~v  109 (310)
                      .....++++++. |.++++... +.|..+|.+++. . ......    .....+.++++|+             ++ +++
T Consensus       100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~~~~~~~~~~~~~-~l~  174 (297)
T 2pm7_B          100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA----HAIGVNSASWAPATIEEDGEHNGTKESR-KFV  174 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC----CSSCEEEEEECCCC------------CC-EEE
T ss_pred             CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec----ccCccceEeecCCcccccccCCCCCCcc-eEE
Confidence            345678888731 555544444 447777776542 1 111111    1123566777775             45 444


Q ss_pred             EeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe--E--EEEecC-CcccceEEEecCC--CeEEEEecCCceEEEEEcc
Q 046018          110 TDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE--V--TILLQG-LAFANGVALSRDR--TFILIAETSNCRILRFWLH  182 (310)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~--~~~~~~-~~~~~gi~~~~d~--~~lyv~~~~~~~i~~~~~~  182 (310)
                      +..                 .++.|..||..++.  .  ...... ......++++|++  ..++++.+.++.|.+|+.+
T Consensus       175 sgs-----------------~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          175 TGG-----------------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             EEE-----------------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             EEc-----------------CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence            432                 26778888765443  2  111222 2346789999985  3466666778899999987


Q ss_pred             CCCCCc-ceeee--eCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          183 GPNSGK-QDVFA--ELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       183 ~~~~~~-~~~~~--~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ...... ...+.  ..+.....++++++|++.++....+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~  277 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK  277 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence            431111 11121  12233456889999987776655554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.0032  Score=58.12  Aligned_cols=157  Identities=9%  Similarity=0.033  Sum_probs=92.7

Q ss_pred             cceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ...+..++++| +|. |-++...+.|..++.++ .+..+ +.....+.....+++++|||++|+++.             
T Consensus        85 ~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~-~l~~l-~~~~~~~~~sv~svafSPDG~~LAsgs-------------  148 (588)
T 2j04_A           85 VCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK-MLTNL-DSKGNLSSRTYHCFEWNPIESSIVVGN-------------  148 (588)
T ss_dssp             SCCEEEEEECS-SSSCEEEEETTSCEEEEETTE-EEEEC-CCSSCSTTTCEEEEEECSSSSCEEEEE-------------
T ss_pred             CCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc-eeeec-cCCCccccccEEEEEEcCCCCEEEEEc-------------
Confidence            35677999999 666 44444444577788543 22221 111111122477999999999666665             


Q ss_pred             hhcCCCCceEEEEeCCCCe--------EEEEecCC----cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCc-cee
Q 046018          125 ILSGDKTGRLLKYEKTTKE--------VTILLQGL----AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGK-QDV  191 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~--------~~~~~~~~----~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~-~~~  191 (310)
                           .+|.|..||.+++.        ...+....    .....++++||+  + ++...++.|..|+.++..... ...
T Consensus       149 -----~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~~~~~~t  220 (588)
T 2j04_A          149 -----EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSHQPVSRM  220 (588)
T ss_dssp             -----TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSSCCCEEE
T ss_pred             -----CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCccccceee
Confidence                 37889999998774        23332111    246789999998  4 444668999999988653211 111


Q ss_pred             eeeC-CCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccE
Q 046018          192 FAEL-PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKT  234 (310)
Q Consensus       192 ~~~~-~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~  234 (310)
                      +... ......+++.  |+..++... +.     +..++..+..
T Consensus       221 L~~~h~~~V~svaFs--g~~LASa~~-~t-----IkLWd~~~~~  256 (588)
T 2j04_A          221 IQNASRRKITDLKIV--DYKVVLTCP-GY-----VHKIDLKNYS  256 (588)
T ss_dssp             EECCCSSCCCCEEEE--TTEEEEECS-SE-----EEEEETTTTE
T ss_pred             ecccccCcEEEEEEE--CCEEEEEeC-Ce-----EEEEECCCCe
Confidence            2111 1345677886  455555544 33     5666544433

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.86  E-value=0.00025  Score=67.72  Aligned_cols=119  Identities=9%  Similarity=0.020  Sum_probs=78.5

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCC-chhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST-SFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~-~~~~~~~~~~~~~  127 (310)
                      +..+++.+ +|+++.....+.|+.+|..+++.+++...... .......++++|||++|.++.... .|          .
T Consensus        18 ~~~~~~s~-dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~~~~----------~   85 (719)
T 1z68_A           18 TFFPNWIS-GQEYLHQSADNNIVLYNIETGQSYTILSNRTM-KSVNASNYGLSPDRQFVYLESDYSKLW----------R   85 (719)
T ss_dssp             CCCCEESS-SSEEEEECTTSCEEEEESSSCCEEEEECHHHH-HTTTCSEEEECTTSSEEEEEEEEEECS----------S
T ss_pred             CCccEECC-CCeEEEEcCCCCEEEEEcCCCcEEEEEccccc-cccceeeEEECCCCCeEEEEecCceeE----------E
Confidence            34678888 77765554444599999999887665432110 001367899999999776665210 00          0


Q ss_pred             CCCCceEEEEeCCCCeE---EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          128 GDKTGRLLKYEKTTKEV---TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~---~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ....+.|+.||.++++.   ..+.   .....++++|||+.|.++.  .+.|++++..++
T Consensus        86 ~s~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g  140 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGD  140 (719)
T ss_dssp             SCEEEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             eecceEEEEEECCCCccccceecC---cccccceECCCCCEEEEEE--CCeEEEEeCCCC
Confidence            01247899999998876   3332   3467799999999776663  579999988654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.86  E-value=0.00046  Score=55.41  Aligned_cols=137  Identities=12%  Similarity=0.032  Sum_probs=84.3

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCC-------CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEG-------GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~-------~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      ....|+++| +|.||++ ....++++++.+       +..+++...    ....-..+.+|++|. ||+.+         
T Consensus        42 ~~~~laf~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~----Gw~~F~a~~fD~~G~-LYav~---------  105 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNG----GWNQFQFLFFDPNGY-LYAVS---------  105 (236)
T ss_dssp             TCSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECS----CGGGCSEEEECTTSC-EEEEE---------
T ss_pred             cceeEEECC-CccEEEE-eCCeEEEECCCCCCcccccccccEeccc----ccccceEEEECCCCC-EEEeC---------
Confidence            455899999 9999999 444599999865       222223211    222357899999999 99985         


Q ss_pred             hhhhhhcCCCCceEEEEeCCC-CeE------EEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEcc-CCCCC---c
Q 046018          121 FMSSILSGDKTGRLLKYEKTT-KEV------TILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLH-GPNSG---K  188 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~-~~~------~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~-~~~~~---~  188 (310)
                                +|.|+++++-+ +.-      ..+.. +-..-.-|.++|+|. ||.+.  .+++++-.+- +....   .
T Consensus       106 ----------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~  172 (236)
T 1tl2_A          106 ----------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLAR  172 (236)
T ss_dssp             ----------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHH
T ss_pred             ----------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccc
Confidence                      68999998732 111      12211 223347899999997 89886  5667764322 11110   0


Q ss_pred             ceeeeeCCCC--CCeeEECCCCCEEEEE
Q 046018          189 QDVFAELPGF--PDNVRSNSNGEFWVAL  214 (310)
Q Consensus       189 ~~~~~~~~~~--p~~i~~d~~G~l~va~  214 (310)
                      ...+.. .+.  -.-+.++++|+||.+.
T Consensus       173 ~~~~g~-~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          173 ATKIGQ-GGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             CEEEES-SSGGGEEEEEECTTSCEEEEE
T ss_pred             cceecc-CCcceEEEEEECCCCcEEEEe
Confidence            111110 111  1226699999999988

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.85  E-value=0.015  Score=54.09  Aligned_cols=79  Identities=13%  Similarity=0.179  Sum_probs=46.1

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccc--cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPL--RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~--~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      +++++  +++||++.....|+.+|.++++..--... .....  ......++. ++. +|++.....+            
T Consensus       110 ~~~~~--~~~v~v~~~dg~l~alD~~tG~~~W~~~~-~~~~~~~~~~~~P~v~-~g~-v~vg~~~~~~------------  172 (571)
T 2ad6_A          110 GLAYG--AGQIVKKQANGHLLALDAKTGKINWEVEV-CDPKVGSTLTQAPFVA-KDT-VLMGCSGAEL------------  172 (571)
T ss_dssp             CCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEEC-CCGGGTCBCCSCCEEE-TTE-EEEECBCGGG------------
T ss_pred             ccEEE--CCEEEEEeCCCEEEEEECCCCCEEEEecC-CCCCccceeccCCEEE-CCE-EEEEecCCcc------------
Confidence            45664  57999997766799999998875311111 11100  011112222 565 8888642110            


Q ss_pred             CCCceEEEEeCCCCeEEE
Q 046018          129 DKTGRLLKYEKTTKEVTI  146 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~  146 (310)
                      ...+.|+.+|+++|+...
T Consensus       173 ~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          173 GVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             TCCCEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEECCCCcEEE
Confidence            125789999999887654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.85  E-value=0.00058  Score=59.62  Aligned_cols=147  Identities=6%  Similarity=-0.038  Sum_probs=84.9

Q ss_pred             eeceEEEeC-CCCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           48 RPLGIRFDK-KTGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        48 ~p~gl~~d~-~~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      ....+++++ +++.|+++...      ..|+.++.+++..+.+..   ..+...+..++++|+|++|+++....      
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~------  259 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE---HAEGESCTHEFWIPDGSAMAYVSYFK------  259 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC---CCTTEEEEEEEECTTSSCEEEEEEET------
T ss_pred             ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec---cCCCccccceEECCCCCEEEEEecCC------
Confidence            344677877 34446555432      248888988776544322   11122456789999998666654210      


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec-CCCeEEEEec---------------CCceEEEEEccCC
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR-DRTFILIAET---------------SNCRILRFWLHGP  184 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~-d~~~lyv~~~---------------~~~~i~~~~~~~~  184 (310)
                             +...+.|+.||.++++.+.+.... ..+ ++++| |++.++.+..               ....|++++++++
T Consensus       260 -------~~~~~~l~~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          260 -------GQTDRVIYKANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             -------TTCCEEEEEECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             -------CCccceEEEEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence                   011245999999888766554221 222 88999 9995554321               3468999998754


Q ss_pred             CCCcceeeeeCCC-----------CCCeeEECCCCC-EEEEEe
Q 046018          185 NSGKQDVFAELPG-----------FPDNVRSNSNGE-FWVALH  215 (310)
Q Consensus       185 ~~~~~~~~~~~~~-----------~p~~i~~d~~G~-l~va~~  215 (310)
                      ..   ..+.....           ....++++++|+ |+++..
T Consensus       331 ~~---~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          331 SA---QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             BC---CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             ce---EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence            32   22322211           134578889996 444443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.83  E-value=0.0029  Score=60.35  Aligned_cols=132  Identities=11%  Similarity=0.052  Sum_probs=78.1

Q ss_pred             eEEEeCCCCeEEEEEeecC--CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE
Q 046018           70 FQVVGPEGGLATQLVTEAA--GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL  147 (310)
Q Consensus        70 i~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  147 (310)
                      |++.+..++..+.+.+...  ........+++++|||++|.++....             +.....|+.+|.++++....
T Consensus       100 l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~-------------G~~~~~i~v~d~~tg~~~~~  166 (710)
T 2xdw_A          100 LYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS-------------GSDWVTIKFMKVDGAKELPD  166 (710)
T ss_dssp             EEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET-------------TCSCEEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC-------------CCceEEEEEEECCCCCCCcc
Confidence            6888876666555544311  11111356789999999776665320             11123799999999887653


Q ss_pred             ecCCcccceEEEecCCCeEEEEecCC---------------ceEEEEEccCCCCCcceeeeeC---CCCCCeeEECCCCC
Q 046018          148 LQGLAFANGVALSRDRTFILIAETSN---------------CRILRFWLHGPNSGKQDVFAEL---PGFPDNVRSNSNGE  209 (310)
Q Consensus       148 ~~~~~~~~gi~~~~d~~~lyv~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~  209 (310)
                      ........+++|+|||+.|+++....               ..|+++++.++... ...+...   +....++.+++||+
T Consensus       167 ~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~-~~~v~~~~~~~~~~~~~~~SpDg~  245 (710)
T 2xdw_A          167 VLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-DILCAEFPDEPKWMGGAELSDDGR  245 (710)
T ss_dssp             EEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECTTSC
T ss_pred             cccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc-ceEEeccCCCCeEEEEEEEcCCCC
Confidence            22222256799999999888765432               24999988654221 1222222   22234788999996


Q ss_pred             -EEEEEe
Q 046018          210 -FWVALH  215 (310)
Q Consensus       210 -l~va~~  215 (310)
                       |.++..
T Consensus       246 ~l~~~~~  252 (710)
T 2xdw_A          246 YVLLSIR  252 (710)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence             444443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.83  E-value=0.00043  Score=59.49  Aligned_cols=119  Identities=11%  Similarity=0.064  Sum_probs=78.8

Q ss_pred             ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018           69 GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL  148 (310)
Q Consensus        69 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  148 (310)
                      .|+.+|.++++.+++         .....++++|||++|+++....             ......|+.++.++++...+.
T Consensus        44 ~l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~~-------------~~~~~~l~~~~~~~g~~~~l~  101 (347)
T 2gop_A           44 TIVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRANE-------------EKKVSEIWVADLETLSSKKIL  101 (347)
T ss_dssp             EEEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEET-------------TTTEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEecc-------------CCCcceEEEEECCCCceEEEE
Confidence            388888888776544         2456789999999777665210             002345999999888777655


Q ss_pred             cCCcccceEEEecCCCeEEEEecC--------------------------CceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          149 QGLAFANGVALSRDRTFILIAETS--------------------------NCRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       149 ~~~~~~~gi~~~~d~~~lyv~~~~--------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                      .... ...++++||++.|+++...                          ...|++++++++..  ...+.. + ....+
T Consensus       102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~-~-~~~~~  176 (347)
T 2gop_A          102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK-P-RFSSG  176 (347)
T ss_dssp             EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE--EEEEEE-E-TTCEE
T ss_pred             cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC-C-Ccccc
Confidence            4333 7889999999988776432                          35799998875421  022332 3 45678


Q ss_pred             EECCCCCEEEEEe
Q 046018          203 RSNSNGEFWVALH  215 (310)
Q Consensus       203 ~~d~~G~l~va~~  215 (310)
                      .++++| ++++..
T Consensus       177 ~~spdg-~~~~~~  188 (347)
T 2gop_A          177 IWHRDK-IVVNVP  188 (347)
T ss_dssp             EEETTE-EEEEEE
T ss_pred             cCCCCe-EEEEEe
Confidence            888888 665543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.81  E-value=0.0031  Score=54.69  Aligned_cols=72  Identities=10%  Similarity=0.074  Sum_probs=52.8

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce-EEEEeCCCCeEEEEec---CCcccceEEEecCCCeEEEE
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR-LLKYEKTTKEVTILLQ---GLAFANGVALSRDRTFILIA  169 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~~~~~~~~~---~~~~~~gi~~~~d~~~lyv~  169 (310)
                      .+..++++|+|+ +.++.+                 .++. |..||..+++......   .......++++||++.|. +
T Consensus       197 ~v~~~~~s~~g~-~l~s~s-----------------~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~-s  257 (355)
T 3vu4_A          197 PIKMVRLNRKSD-MVATCS-----------------QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLA-V  257 (355)
T ss_dssp             CEEEEEECTTSS-EEEEEE-----------------TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEE-E
T ss_pred             ceEEEEECCCCC-EEEEEe-----------------CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEE-E
Confidence            468899999999 555543                 2777 9999998776554333   233467899999999554 4


Q ss_pred             ecCCceEEEEEccCC
Q 046018          170 ETSNCRILRFWLHGP  184 (310)
Q Consensus       170 ~~~~~~i~~~~~~~~  184 (310)
                      .+.++.|.+|+....
T Consensus       258 ~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          258 VSDKWTLHVFEIFND  272 (355)
T ss_dssp             EETTCEEEEEESSCC
T ss_pred             EECCCEEEEEEccCC
Confidence            467789999998743

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.0033  Score=61.80  Aligned_cols=158  Identities=11%  Similarity=0.061  Sum_probs=98.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....+++++ +..|..+...+.|..+|.++++.......     ...+..++++|++++++++.               
T Consensus        59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~-----~~~V~~v~~sp~g~~l~sgs---------------  117 (902)
T 2oaj_A           59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFV-----PGKITSIDTDASLDWMLIGL---------------  117 (902)
T ss_dssp             CCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEEC-----SSCEEEEECCTTCSEEEEEE---------------
T ss_pred             CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcC-----CCCEEEEEECCCCCEEEEEc---------------
Confidence            3466899988 43355555555588889988765332221     12467899999999666655               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEec------------CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQ------------GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE  194 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~------------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~  194 (310)
                         .+|.|..||.++++......            .......++++|++..++++....+.| .||...+..  ...+..
T Consensus       118 ---~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~  191 (902)
T 2oaj_A          118 ---QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIY  191 (902)
T ss_dssp             ---TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECC
T ss_pred             ---CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEec
Confidence               37889999998876542210            112357899999754345555677888 999874311  111110


Q ss_pred             C------------------CCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEe
Q 046018          195 L------------------PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLL  236 (310)
Q Consensus       195 ~------------------~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~  236 (310)
                      .                  ......+++.++|++.++....+.     +..++ ..++.+.
T Consensus       192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-----i~lWd~~~g~~~~  247 (902)
T 2oaj_A          192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-----LVFWDANSGHMIM  247 (902)
T ss_dssp             CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-----EEEEETTTCCEEE
T ss_pred             ccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-----EEEEECCCCcEEE
Confidence            0                  022456899999998787776665     34443 3555543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.79  E-value=0.018  Score=51.21  Aligned_cols=203  Identities=13%  Similarity=0.047  Sum_probs=101.1

Q ss_pred             EEEEEeCCCCC-eEEEEEeccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec
Q 046018           10 RILKWQGDELG-WTEFAVTTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA   87 (310)
Q Consensus        10 ~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~   87 (310)
                      .|.++..+... .++.....+..+|..+.+.... .........++++  +..|+.+...+.|..+|.++++....... 
T Consensus       135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-  211 (435)
T 1p22_A          135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEMLNTLIH-  211 (435)
T ss_dssp             CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--SSEEEEEETTSCEEEEESSSCCEEEEECC-
T ss_pred             cEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC--CCEEEEEcCCCeEEEEECCCCcEEEEEcC-
Confidence            35666664433 3444445555566544221111 1122344456653  34555555555588889988765433221 


Q ss_pred             CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEE---EEecC-CcccceEEEecCC
Q 046018           88 AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVT---ILLQG-LAFANGVALSRDR  163 (310)
Q Consensus        88 ~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~---~~~~~-~~~~~gi~~~~d~  163 (310)
                         ....+..++++  ++.++.+.                  .++.|..||..++...   ..... ......+++  ++
T Consensus       212 ---h~~~v~~l~~~--~~~l~s~s------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~  266 (435)
T 1p22_A          212 ---HCEAVLHLRFN--NGMMVTCS------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DD  266 (435)
T ss_dssp             ---CCSCEEEEECC--TTEEEEEE------------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ET
T ss_pred             ---CCCcEEEEEEc--CCEEEEee------------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CC
Confidence               11234555554  44355444                  2778999998765432   11211 222345555  66


Q ss_pred             CeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccchh
Q 046018          164 TFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLSF  242 (310)
Q Consensus       164 ~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~  242 (310)
                      +.++.+ ..++.|.+||...+..  ...+.........+.+  ++++.++....+.     +..++ ..++.+..+....
T Consensus       267 ~~l~s~-~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-----i~iwd~~~~~~~~~~~~h~  336 (435)
T 1p22_A          267 KYIVSA-SGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNT-----IRLWDIECGACLRVLEGHE  336 (435)
T ss_dssp             TEEEEE-ETTSEEEEEETTTCCE--EEEEECCSSCEEEEEE--ETTEEEEEETTSC-----EEEEETTTCCEEEEECCCS
T ss_pred             CEEEEE-eCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-----EEEEECCCCCEEEEEeCCc
Confidence            755544 6778999999874311  1122211122334555  4555555555554     44443 4566665554333


Q ss_pred             hhhccccc
Q 046018          243 RQLHSLLV  250 (310)
Q Consensus       243 ~~~~~~~~  250 (310)
                      ..+.++.+
T Consensus       337 ~~v~~~~~  344 (435)
T 1p22_A          337 ELVRCIRF  344 (435)
T ss_dssp             SCEEEEEC
T ss_pred             CcEEEEEe
Confidence            33334433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.78  E-value=0.0064  Score=57.81  Aligned_cols=119  Identities=11%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCcc--ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQP--LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .+++++  +++||++.....|+.+|.++++..--........  .......++. ++. +|++.....+           
T Consensus       122 ~~~a~~--~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~-v~v~~~~~~~-----------  186 (677)
T 1kb0_A          122 RGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGK-VIIGNGGAEY-----------  186 (677)
T ss_dssp             CCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTE-EEECCBCTTT-----------
T ss_pred             CCceEE--CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCE-EEEEeccccc-----------
Confidence            356665  5799999777679999999887532112110100  0111122222 455 8887643111           


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCc-c-----------------------------c---ceEEEecCCCeEEEEecCC-
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLA-F-----------------------------A---NGVALSRDRTFILIAETSN-  173 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~-~-----------------------------~---~gi~~~~d~~~lyv~~~~~-  173 (310)
                       ...+.|+.+|.++|+......... .                             +   ..++++++++.+|+..... 
T Consensus       187 -~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~  265 (677)
T 1kb0_A          187 -GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGS  265 (677)
T ss_dssp             -CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred             -CCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCc
Confidence             125789999999887654221110 0                             0   2578899988888874321 


Q ss_pred             -----------------ceEEEEEccCC
Q 046018          174 -----------------CRILRFWLHGP  184 (310)
Q Consensus       174 -----------------~~i~~~~~~~~  184 (310)
                                       ..|+.+|.+++
T Consensus       266 ~w~~~~~~~~~gd~~~~~sv~AlD~~TG  293 (677)
T 1kb0_A          266 PWSHKVRSPKGGDNLYLASIVALDPDTG  293 (677)
T ss_dssp             SSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred             cccCCCCCccCCCCeeeEEEEEEECCCC
Confidence                             25888888754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.00037  Score=64.20  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=72.8

Q ss_pred             ceeceE--EEeCCCC-cEEEEECCCc-eEEEeCCCCeEEE-EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           47 GRPLGI--RFDKKTG-DLYIADAYLG-FQVVGPEGGLATQ-LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        47 ~~p~gl--~~d~~~g-~l~v~~~~~g-i~~~d~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      .....+  ++.+ +| .++++...++ |..+|.++++... +....   ....+..++++|+++ .+++...        
T Consensus       309 ~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~---~~~~v~~v~fsp~~~-~l~s~~~--------  375 (524)
T 2j04_B          309 SYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF---RGSNLVPVVYCPQIY-SYIYSDG--------  375 (524)
T ss_dssp             SCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC---SCCSCCCEEEETTTT-EEEEECS--------
T ss_pred             ccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCccccccccc---ccCcccceEeCCCcC-eEEEeCC--------
Confidence            445566  3455 66 6766665555 7777887654311 11111   111357899999999 6666533        


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeE-EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEV-TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                               ++.|..||..++.. ..+.........++++|+++. +++.+.++.|.+|++..
T Consensus       376 ---------d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          376 ---------ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAAR  428 (524)
T ss_dssp             ---------SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCS
T ss_pred             ---------CCcEEEEECcccccceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechH
Confidence                     56788999876653 333333345689999999985 45557789999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.75  E-value=0.0025  Score=54.22  Aligned_cols=153  Identities=6%  Similarity=0.018  Sum_probs=84.5

Q ss_pred             ceeceEEEeCCC-CcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCC-----------------CCEE
Q 046018           47 GRPLGIRFDKKT-GDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH-----------------KGVI  107 (310)
Q Consensus        47 ~~p~gl~~d~~~-g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-----------------g~~l  107 (310)
                      .....++++++. +.++++....+ |..+|.+++..........+ .....+.++++|+                 ++ +
T Consensus       104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  181 (316)
T 3bg1_A          104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-R  181 (316)
T ss_dssp             SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCC-B
T ss_pred             CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc-ccCCcceEEEccccCCccccccccccCccccc-e
Confidence            446689998832 55555555544 66677665421111111111 1123566777776                 23 3


Q ss_pred             EEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC-eEEEEe--cC-CcccceEEEecCC----CeEEEEecCCceEEEE
Q 046018          108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK-EVTILL--QG-LAFANGVALSRDR----TFILIAETSNCRILRF  179 (310)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~~~--~~-~~~~~gi~~~~d~----~~lyv~~~~~~~i~~~  179 (310)
                      +++.                 ..++.|..||..++ ..+...  .. ......++++|++    + ++++.+.++.|.+|
T Consensus       182 l~sg-----------------s~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~~v~iw  243 (316)
T 3bg1_A          182 FASG-----------------GCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDGRVFIW  243 (316)
T ss_dssp             EECC-----------------BTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC-EEEEEETTCEEEEE
T ss_pred             EEEe-----------------cCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc-eEEEEcCCCeEEEE
Confidence            3332                 23677777877543 222221  12 2235789999986    4 56666778999999


Q ss_pred             EccCCCCC--cceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          180 WLHGPNSG--KQDVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       180 ~~~~~~~~--~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +.+.....  ....+.........++++++|++.++....+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~  285 (316)
T 3bg1_A          244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK  285 (316)
T ss_dssp             ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSC
T ss_pred             EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCe
Confidence            98642111  11222223344567899999987666655554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.0038  Score=57.60  Aligned_cols=145  Identities=10%  Similarity=0.060  Sum_probs=84.5

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE--------EEE------------EeecC------CccccCCcceEE
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA--------TQL------------VTEAA------GQPLRFTNDLDI  100 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~--------~~~------------~~~~~------~~~~~~~~~i~~  100 (310)
                      .....+++++ +|+++++...++..+ |+...+.        ..+            .....      ......+.++++
T Consensus        16 ~~v~sv~~Sp-DG~~iASas~D~TV~-d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vaw   93 (588)
T 2j04_A           16 DWKNNLTWAR-DGTLYLTTFPDISIG-QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKP   93 (588)
T ss_dssp             SSSCCEEECT-TSCEEEECSSSEEEE-EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEE
T ss_pred             ccEEEEEECC-CCCEEEEEcCCceee-cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEE
Confidence            4556788988 888888866555333 3332220        000            00000      011235678889


Q ss_pred             eCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc-----ccceEEEecCCCeEEEEecCCce
Q 046018          101 DEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA-----FANGVALSRDRTFILIAETSNCR  175 (310)
Q Consensus       101 d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-----~~~gi~~~~d~~~lyv~~~~~~~  175 (310)
                      +|+|.+|-++.                  .+|.|..|+.++ ....+. ...     ....++|+|||+.|+.+ ..++.
T Consensus        94 SPdG~~LAs~s------------------~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg-s~DGt  152 (588)
T 2j04_A           94 SPIDDWMAVLS------------------NNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG-NEDGE  152 (588)
T ss_dssp             CSSSSCEEEEE------------------TTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE-ETTSE
T ss_pred             CCCCCEEEEEe------------------CCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEE-cCCCE
Confidence            99998444443                  378899998653 333222 111     25689999999977776 56789


Q ss_pred             EEEEEccCCCCCcc-----eeeee-CC---CCCCeeEECCCCCEEEEEe
Q 046018          176 ILRFWLHGPNSGKQ-----DVFAE-LP---GFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       176 i~~~~~~~~~~~~~-----~~~~~-~~---~~p~~i~~d~~G~l~va~~  215 (310)
                      |..|+..++.....     ..+.. ..   .....+++.++| +.++..
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~  200 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS  200 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC
Confidence            99999886533111     22211 11   244678999999 544443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.73  E-value=0.011  Score=52.45  Aligned_cols=216  Identities=12%  Similarity=0.056  Sum_probs=105.6

Q ss_pred             EEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCc
Q 046018           53 RFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTG  132 (310)
Q Consensus        53 ~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g  132 (310)
                      ++..++..|..+...+.|..+|..+++........    ...+..+++  +++.++.+.                  .+|
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~--~~~~l~sg~------------------~dg  193 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH----TGSVLCLQY--DERVIITGS------------------SDS  193 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCC----SSCEEEEEC--CSSEEEEEE------------------TTS
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC----CCcEEEEEE--CCCEEEEEc------------------CCC
Confidence            34442334455544455888899887654333211    113344444  677344443                  378


Q ss_pred             eEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcc-eeeeeCCCCCCeeEECCCCCE
Q 046018          133 RLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQ-DVFAELPGFPDNVRSNSNGEF  210 (310)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~G~l  210 (310)
                      .|..||..+++....... ......++++  ++ ++++.+.++.|.+||......... ..+.........+.+  +|+.
T Consensus       194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~  268 (435)
T 1p22_A          194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY  268 (435)
T ss_dssp             CEEEEESSSCCEEEEECCCCSCEEEEECC--TT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE
T ss_pred             eEEEEECCCCcEEEEEcCCCCcEEEEEEc--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCE
Confidence            899999988766543322 2234566665  44 445556789999999875322111 111111122344555  5666


Q ss_pred             EEEEecCCccceeeeeec-cccccEEeeccchhhhhcccccCC------CCceEEEEECC-CCCEEEEEEcCCCCeecce
Q 046018          211 WVALHAKKGLFGKLILLN-SWLGKTLLKLPLSFRQLHSLLVGG------KPHATAIKLSE-KGEVLEVLEDCEGKTLSFI  282 (310)
Q Consensus       211 ~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~-~g~~~~~~~~~~g~~~~~~  282 (310)
                      .++....+.     +..+ ...++.+..+........++.+.+      ..++.+..+|. .++.+..+....    ..+
T Consensus       269 l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~----~~v  339 (435)
T 1p22_A          269 IVSASGDRT-----IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE----ELV  339 (435)
T ss_dssp             EEEEETTSE-----EEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS----SCE
T ss_pred             EEEEeCCCe-----EEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc----CcE
Confidence            555555454     3333 345555554433222222222211      01111112232 234444333221    224


Q ss_pred             eEEEEeCCEEEEecCCCCeEEEecc
Q 046018          283 SEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       283 ~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                      +.+...+..|..|+. +..|.+++.
T Consensus       340 ~~~~~~~~~l~sg~~-dg~i~vwd~  363 (435)
T 1p22_A          340 RCIRFDNKRIVSGAY-DGKIKVWDL  363 (435)
T ss_dssp             EEEECCSSEEEEEET-TSCEEEEEH
T ss_pred             EEEEecCCEEEEEeC-CCcEEEEEC
Confidence            455455566666665 666877764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.68  E-value=0.00057  Score=61.38  Aligned_cols=119  Identities=7%  Similarity=-0.063  Sum_probs=72.6

Q ss_pred             CCcceEEeCCCCEEEE---EeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC-----e-------EEEEecCCcccceEE
Q 046018           94 FTNDLDIDEHKGVIYF---TDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK-----E-------VTILLQGLAFANGVA  158 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v---~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-----~-------~~~~~~~~~~~~gi~  158 (310)
                      .+.+++++++|++|++   +..                 .++.|..||..++     +       ...+.........++
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  156 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSE-----------------YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK  156 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETT-----------------TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE
T ss_pred             cccEEEEcCCCCEEEEEEeccC-----------------CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE
Confidence            4788999999995554   332                 2678888886432     0       111111123467899


Q ss_pred             EecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEe
Q 046018          159 LSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLL  236 (310)
Q Consensus       159 ~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~  236 (310)
                      |+|+...++++.+.++.|.+||...+.    .....  .......++++++|+..++....+.     +..++..++...
T Consensus       157 ~~p~~~~~las~s~Dg~v~iwD~~~~~----~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-----v~iwd~~~~~~~  227 (434)
T 2oit_A          157 WNPTVPSMVAVCLADGSIAVLQVTETV----KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-----VVQYLPTLQEKK  227 (434)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEEESSSE----EEEEEECGGGCEEEEEECTTSSCEEEEETTSC-----EEEECTTCCEEE
T ss_pred             ECCCCCCEEEEEECCCeEEEEEcCCCc----ceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-----EEEEccCCcccc
Confidence            999843366666788999999987431    11111  1234578999999976555555554     555554454444


Q ss_pred             ec
Q 046018          237 KL  238 (310)
Q Consensus       237 ~~  238 (310)
                      .+
T Consensus       228 ~~  229 (434)
T 2oit_A          228 VI  229 (434)
T ss_dssp             EE
T ss_pred             cc
Confidence            33

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.68  E-value=0.036  Score=51.75  Aligned_cols=82  Identities=15%  Similarity=0.129  Sum_probs=46.6

Q ss_pred             ceEEEeCCCCc----EEEEECCCceEEEeCCCCeEEEEEeecCCcc-c-cCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           50 LGIRFDKKTGD----LYIADAYLGFQVVGPEGGLATQLVTEAAGQP-L-RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        50 ~gl~~d~~~g~----l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~-~-~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .++++.+.++.    ||+++....|+.+|.++++.. ......... . .....-++. ++. +|++.....+       
T Consensus       109 ~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~-W~~~~~~~~~~~~~~ssP~v~-~g~-V~vg~~g~e~-------  178 (599)
T 1w6s_A          109 RGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV-WKVENSDIKVGSTLTIAPYVV-KDK-VIIGSSGAEL-------  178 (599)
T ss_dssp             CCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE-EEEECCCGGGTCBCCSCCEEE-TTE-EEECCBCGGG-------
T ss_pred             cceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEE-EeecCCCCCccceeecCCEEE-CCE-EEEEeccccc-------
Confidence            35677422566    999977767999999988753 211111100 0 001111222 565 8887632111       


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEE
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTI  146 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~  146 (310)
                           ...+.|+.+|.++|+..-
T Consensus       179 -----g~~g~v~A~D~~TG~~~W  196 (599)
T 1w6s_A          179 -----GVRGYLTAYDVKTGEQVW  196 (599)
T ss_dssp             -----TCCCEEEEEETTTCCEEE
T ss_pred             -----CCCCeEEEEECCCCcEEE
Confidence                 125789999999887654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.68  E-value=0.0008  Score=62.39  Aligned_cols=119  Identities=15%  Similarity=0.197  Sum_probs=78.7

Q ss_pred             ccceeceEEEeCCCCcEEEEECC----------------------CceEEEeCCCC-------eEEEEEeec--------
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY----------------------LGFQVVGPEGG-------LATQLVTEA--------   87 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~----------------------~gi~~~d~~~~-------~~~~~~~~~--------   87 (310)
                      ...+|.++.+++.+|+||++...                      +.|++++++.+       ....++...        
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            44689999999878999999753                      12888865432       112222110        


Q ss_pred             ---------CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC--cccce
Q 046018           88 ---------AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL--AFANG  156 (310)
Q Consensus        88 ---------~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~--~~~~g  156 (310)
                               ....+..|-.|+++++|+ |||+.....-..     ..+.......++.+++.++++..+....  ...-|
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~G~-LwI~eDg~~~~~-----~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG  535 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNA-----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTG  535 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCS-----GGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEE
T ss_pred             ccccccccCCCCCccCCcceEECCCCC-EEEEecCCCccc-----ccccccccceEEEEeCCCCeEEEEEeCCCCccCcC
Confidence                     011245788999999999 999986531100     0011224567889999999988876543  33569


Q ss_pred             EEEecCCCeEEEE
Q 046018          157 VALSRDRTFILIA  169 (310)
Q Consensus       157 i~~~~d~~~lyv~  169 (310)
                      ++|+||+++||+.
T Consensus       536 ~~fspDg~tlfvn  548 (592)
T 3zwu_A          536 ISFSPDQKTLFVG  548 (592)
T ss_dssp             EEECTTSSEEEEE
T ss_pred             eeECCCCCEEEEE
Confidence            9999999999986

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.58  E-value=0.0092  Score=51.01  Aligned_cols=141  Identities=9%  Similarity=0.047  Sum_probs=80.0

Q ss_pred             eceEEEeCCCCcEEEEECC---------------------------CceEEEeCCCCeE-EEEEeecCCccccCCcceEE
Q 046018           49 PLGIRFDKKTGDLYIADAY---------------------------LGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDI  100 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~---------------------------~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~  100 (310)
                      ...++++++...|+++...                           ..|+.+|..+++. +.+..     +  ....+++
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~  178 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIW  178 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccC
Confidence            6788899833346665421                           2488899988876 44422     1  4678899


Q ss_pred             eCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC-------C
Q 046018          101 DEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS-------N  173 (310)
Q Consensus       101 d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~-------~  173 (310)
                      +|+| .++++.....-.         .......|+.+|  +++.+.+...  .. -..++|||+.|+++...       .
T Consensus       179 spdg-~~~~~~~~~~~~---------~~~~~~~l~~~d--~~~~~~l~~~--~~-~~~~spdg~~l~~~~~~~~~~~~~~  243 (347)
T 2gop_A          179 HRDK-IVVNVPHREIIP---------QYFKFWDIYIWE--DGKEEKMFEK--VS-FYAVDSDGERILLYGKPEKKYMSEH  243 (347)
T ss_dssp             ETTE-EEEEEECCCSSC---------CSSCCEEEEEEE--TTEEEEEEEE--ES-EEEEEECSSCEEEEECCSSSCCCSS
T ss_pred             CCCe-EEEEEecccccc---------cccccccEEEeC--CCceEEeccC--cc-eeeECCCCCEEEEEEccccCCcccc
Confidence            9999 566664321000         000134688998  5776665543  22 22349999987665432       3


Q ss_pred             ceEEEEEccCCCCCcceeeee-CCCCCCe-eEECCCCCEEEEEecCC
Q 046018          174 CRILRFWLHGPNSGKQDVFAE-LPGFPDN-VRSNSNGEFWVALHAKK  218 (310)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~-~~~~p~~-i~~d~~G~l~va~~~~~  218 (310)
                      ..|+.++ .+    ....+.. .+..... +.++ +| +++.....+
T Consensus       244 ~~l~~~d-~~----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          244 NKLYIYD-GK----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             CEEEEEC-SS----CEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             ceEEEEC-CC----ceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            5788887 32    1222211 1222333 6777 88 766655444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.57  E-value=0.0069  Score=57.63  Aligned_cols=144  Identities=11%  Similarity=0.022  Sum_probs=82.7

Q ss_pred             CCcEEEEECCC----c-eEEEeCCCCeEEEEEeecCC--ccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           58 TGDLYIADAYL----G-FQVVGPEGGLATQLVTEAAG--QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        58 ~g~l~v~~~~~----g-i~~~d~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      .+.+|......    . |++.+..++..+++.+....  .......+++++|||++|.++.+.             .+..
T Consensus        79 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~-------------~G~~  145 (695)
T 2bkl_A           79 NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKP-------------NAAD  145 (695)
T ss_dssp             TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEE-------------TTCS
T ss_pred             CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECC-------------CCCc
Confidence            34555554322    2 78888776666656543110  011235678899999976666532             0112


Q ss_pred             CceEEEEeCCCCeEEEEecCCcc--cceEEEecCCCeEEEEecC------------CceEEEEEccCCCCCcceeeeeCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAF--ANGVALSRDRTFILIAETS------------NCRILRFWLHGPNSGKQDVFAELP  196 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~~d~~~lyv~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~  196 (310)
                      ...|+.+|.++++... ......  ..+++|+|||+.|+++...            ...|++++..++... ...+...+
T Consensus       146 ~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-~~lv~~~~  223 (695)
T 2bkl_A          146 EAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-DTVVHERT  223 (695)
T ss_dssp             CCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-CEEEECCC
T ss_pred             eEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-ceEEEecC
Confidence            4579999999886531 111112  2689999999988776442            234999998754221 12232222


Q ss_pred             C---CCCeeEECCCCC-EEEEEec
Q 046018          197 G---FPDNVRSNSNGE-FWVALHA  216 (310)
Q Consensus       197 ~---~p~~i~~d~~G~-l~va~~~  216 (310)
                      .   ...++.+++||+ |.++...
T Consensus       224 ~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          224 GDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEeC
Confidence            2   234678999995 4444433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.56  E-value=0.004  Score=52.97  Aligned_cols=115  Identities=11%  Similarity=0.004  Sum_probs=71.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeC--CCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE--HKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....+++++ +|++.++....+ |..+|.+++....+... .+ -...+.++++.+  +++ ++++.+           
T Consensus        14 ~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~g-H~~~V~~v~~~~~~~~~-~l~s~s-----------   78 (316)
T 3bg1_A           14 DMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADL-RG-HEGPVWQVAWAHPMYGN-ILASCS-----------   78 (316)
T ss_dssp             CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEE-EC-CSSCEEEEEECCGGGSS-CEEEEE-----------
T ss_pred             CeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cC-CCccEEEEEeCCCCCCC-EEEEEE-----------
Confidence            4456789998 777666555544 77778776643222211 11 112467888865  477 555543           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEE---EEecCCcccceEEEecC--CCeEEEEecCCceEEEEEccC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVT---ILLQGLAFANGVALSRD--RTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~---~~~~~~~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~~~~  183 (310)
                            .++.|..||..+++.+   .+.......+.++++|+  +. ++++.+..+.|.+|+...
T Consensus        79 ------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           79 ------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             ------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECS
T ss_pred             ------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCC
Confidence                  2778999998876422   22222334689999998  55 555557788999998864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.0054  Score=54.40  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=70.5

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEe----CCCCEEEEEeCCCchhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID----EHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d----~~g~~l~v~~~~~~~~~~~~  121 (310)
                      ..+..+++++ ++.++++... +.|..+|.+.++.........   ...+..+++.    +++. ++++..         
T Consensus       215 ~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~s~~~~-~l~s~~---------  280 (437)
T 3gre_A          215 GAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD---HAPITHVEVCQFYGKNSV-IVVGGS---------  280 (437)
T ss_dssp             CCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTT---CEEEEEEEECTTTCTTEE-EEEEES---------
T ss_pred             CceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCC---CCceEEEEeccccCCCcc-EEEEEc---------
Confidence            4667899999 6665554444 448888998876543322111   1135566444    5676 555443         


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEecCC---------------------------cccceEEEecCCCeEEEEecCCc
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQGL---------------------------AFANGVALSRDRTFILIAETSNC  174 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---------------------------~~~~gi~~~~d~~~lyv~~~~~~  174 (310)
                              .++.|..||..+++........                           .....++++ +++ ++++...++
T Consensus       281 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~  350 (437)
T 3gre_A          281 --------SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATS  350 (437)
T ss_dssp             --------TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGT
T ss_pred             --------CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCC
Confidence                    3788999999877654432211                           113457888 665 556667789


Q ss_pred             eEEEEEccCC
Q 046018          175 RILRFWLHGP  184 (310)
Q Consensus       175 ~i~~~~~~~~  184 (310)
                      .|..||...+
T Consensus       351 ~i~~wd~~~~  360 (437)
T 3gre_A          351 SIVMFSLNEL  360 (437)
T ss_dssp             EEEEEETTCG
T ss_pred             eEEEEECCCc
Confidence            9999998753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.0093  Score=58.63  Aligned_cols=103  Identities=12%  Similarity=0.121  Sum_probs=68.8

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN  173 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~  173 (310)
                      .+..++++|+|+ +.++..                 .+|.|..|+..+.+.............++|+| ++ ++++...+
T Consensus        19 ~V~~lafspdg~-~lAsgs-----------------~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D   78 (902)
T 2oaj_A           19 KPIAAAFDFTQN-LLAIAT-----------------VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAK   78 (902)
T ss_dssp             CEEEEEEETTTT-EEEEEE-----------------TTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETT
T ss_pred             CcEEEEECCCCC-EEEEEe-----------------CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECc
Confidence            478899999999 554442                 37889999988766544333333457899999 77 44455678


Q ss_pred             ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          174 CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +.|.+||.+.+..  ...+ ..++....++++++|++.++....+.
T Consensus        79 ~~v~lWd~~~~~~--~~~~-~~~~~V~~v~~sp~g~~l~sgs~dg~  121 (902)
T 2oaj_A           79 DTVYVLSLYSQKV--LTTV-FVPGKITSIDTDASLDWMLIGLQNGS  121 (902)
T ss_dssp             CEEEEEETTTCSE--EEEE-ECSSCEEEEECCTTCSEEEEEETTSC
T ss_pred             CeEEEEECCCCcE--EEEE-cCCCCEEEEEECCCCCEEEEEcCCCc
Confidence            9999999875321  1112 12334567899999987666555554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.47  E-value=0.013  Score=56.08  Aligned_cols=131  Identities=10%  Similarity=0.042  Sum_probs=74.8

Q ss_pred             eEEEeCC---CCeEEEEEeecCCccc--cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE
Q 046018           70 FQVVGPE---GGLATQLVTEAAGQPL--RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV  144 (310)
Q Consensus        70 i~~~d~~---~~~~~~~~~~~~~~~~--~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  144 (310)
                      |++.+..   ++..+++.+.......  ....+++++|||++|.++....             +.....|+.+|.++++.
T Consensus       135 l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-------------G~e~~~i~v~dl~tg~~  201 (741)
T 1yr2_A          135 LLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG-------------GSDWRTVKFVGVADGKP  201 (741)
T ss_dssp             EEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET-------------TCSEEEEEEEETTTCCE
T ss_pred             EEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC-------------CCceEEEEEEECCCCCC
Confidence            6788775   5555555443111111  1356789999999776664220             11124699999998876


Q ss_pred             EEEecCCcccceEEEecCCCeEEEEecCC-------------ceEEEEEccCCCCCcceeeeeCCC---CCCeeEECCCC
Q 046018          145 TILLQGLAFANGVALSRDRTFILIAETSN-------------CRILRFWLHGPNSGKQDVFAELPG---FPDNVRSNSNG  208 (310)
Q Consensus       145 ~~~~~~~~~~~gi~~~~d~~~lyv~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~G  208 (310)
                      ...........+++|+|| +.|+++....             ..|++++..++... ...+...+.   ...++.+++||
T Consensus       202 ~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~lv~~~~~~~~~~~~~~~SpDG  279 (741)
T 1yr2_A          202 LADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-DQPVFATPELPKRGHGASVSSDG  279 (741)
T ss_dssp             EEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECTTS
T ss_pred             CCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh-CEEEeccCCCCeEEEEEEECCCC
Confidence            543211111257899999 8887765432             25888887643221 122322222   23467889999


Q ss_pred             C-EEEEEe
Q 046018          209 E-FWVALH  215 (310)
Q Consensus       209 ~-l~va~~  215 (310)
                      + |.++..
T Consensus       280 ~~l~~~~~  287 (741)
T 1yr2_A          280 RWVVITSS  287 (741)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
Confidence            6 444443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.45  E-value=0.037  Score=46.20  Aligned_cols=144  Identities=10%  Similarity=0.030  Sum_probs=87.8

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      -|++++ ++.|-++ ..+.|..+|.++++..+.....  .....+..++++++|+ ..++..                 .
T Consensus        30 ~l~WS~-~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~--~~~~~V~~v~~~~~~~-~l~sgs-----------------~   87 (318)
T 4ggc_A           30 LVDWSS-GNVLAVA-LDNSVYLWSASSGDILQLLQME--QPGEYISSVAWIKEGN-YLAVGT-----------------S   87 (318)
T ss_dssp             CEEECT-TSEEEEE-ETTEEEEEETTTCCEEEEEECC--STTCCEEEEEECTTSS-EEEEEE-----------------T
T ss_pred             EEEECC-CCEEEEE-eCCEEEEEECCCCCEEEEEEec--CCCCeEEEEEECCCCC-EEEEEE-----------------C
Confidence            478887 6544443 4445888999998866554321  1223578899999999 554442                 2


Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF  210 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  210 (310)
                      ++.|..|+.++++........ ...-.++++++. ++++....+.+..++...... ....+.........+.+.++|++
T Consensus        88 Dg~v~iw~~~~~~~~~~~~~h-~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  164 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLRNMTSH-SARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAPDGRH  164 (318)
T ss_dssp             TSEEEEEETTTTEEEEEEECC-SSCEEEEEEETT-EEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCcEEEeecCCceeEEEecCc-cceEEEeecCCC-EEEEEecCCceEeeecCCCce-eEEEEcCccCceEEEEEcCCCCE
Confidence            788999999988765433322 233455666777 455556677777777653211 11111112233456778888887


Q ss_pred             EEEEecCCc
Q 046018          211 WVALHAKKG  219 (310)
Q Consensus       211 ~va~~~~~~  219 (310)
                      .++....+.
T Consensus       165 l~s~~~d~~  173 (318)
T 4ggc_A          165 LASGGNDNL  173 (318)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEecCcc
Confidence            777666554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.40  E-value=0.098  Score=49.74  Aligned_cols=71  Identities=15%  Similarity=0.153  Sum_probs=38.9

Q ss_pred             eeeccccccEEeeccchhhh-------hcccccCCCCceEEEEECC-CCCEEEEEEcCCCCeecceeEEEEeCCEEEEec
Q 046018          225 ILLNSWLGKTLLKLPLSFRQ-------LHSLLVGGKPHATAIKLSE-KGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGS  296 (310)
Q Consensus       225 i~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs  296 (310)
                      ...+..+|+.+.+++.+...       ...+.|.+.....+.++|. +|+++..+..+.+.. ..+.+ ...+|+.||+.
T Consensus       458 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~-~~p~t-y~~~G~qyv~~  535 (689)
T 1yiq_A          458 IAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM-AAPVT-YSVDGEQYVTF  535 (689)
T ss_dssp             EEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEE-EEETTEEEEEE
T ss_pred             EEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc-cCceE-EEECCEEEEEE
Confidence            44556678877666543221       1122333344456677874 488887776654432 12211 24688989875


Q ss_pred             C
Q 046018          297 V  297 (310)
Q Consensus       297 ~  297 (310)
                      .
T Consensus       536 ~  536 (689)
T 1yiq_A          536 M  536 (689)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.38  E-value=0.014  Score=55.95  Aligned_cols=192  Identities=12%  Similarity=0.031  Sum_probs=99.6

Q ss_pred             ccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC--------------ceEEEeCCCCeE--EEEEeecCCcc
Q 046018           28 TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL--------------GFQVVGPEGGLA--TQLVTEAAGQP   91 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~--------------gi~~~d~~~~~~--~~~~~~~~~~~   91 (310)
                      .+..+|..+..............+++++++ ..|+++....              .|++.+..++..  +.+... ...+
T Consensus       190 ~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~  267 (741)
T 1yr2_A          190 TVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PELP  267 (741)
T ss_dssp             EEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-TTCT
T ss_pred             EEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-CCCC
Confidence            355566655332111111111257889995 6777776432              277777766542  222221 1111


Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC--e-EEEEecCCcccceEEEecCCCeEEE
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK--E-VTILLQGLAFANGVALSRDRTFILI  168 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~-~~~~~~~~~~~~gi~~~~d~~~lyv  168 (310)
                       ....++.++|||++|+++....             ......|+.+|.+++  + .+.+.......... +++|++.||+
T Consensus       268 -~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~  332 (741)
T 1yr2_A          268 -KRGHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWF  332 (741)
T ss_dssp             -TCEEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEE
T ss_pred             -eEEEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEE
Confidence             1345788999999777765321             012457999998776  4 55554333222233 4689988887


Q ss_pred             EecC---CceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          169 AETS---NCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       169 ~~~~---~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      ....   +.+|++++.++.. .....+.. ......++.++ ++.|+++....+..  + +...+..++....+.++
T Consensus       333 ~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~--~-l~~~~~~g~~~~~l~~~  404 (741)
T 1yr2_A          333 VSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKS--Q-VLAFDLDGKPAGAVSLP  404 (741)
T ss_dssp             EECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEE--E-EEEEETTSCEEEECBCS
T ss_pred             EECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEE--E-EEEEeCCCCceeeccCC
Confidence            6432   4579999987532 22222221 11222345555 45666665544321  1 33344455555555443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.37  E-value=0.017  Score=54.89  Aligned_cols=169  Identities=9%  Similarity=0.039  Sum_probs=92.8

Q ss_pred             ceEEEeCCCCc-EEEEECCCc-------------eEEEeCCCCeE--EEEEeecCCccccCCcceEEeCCCCEEEEEeCC
Q 046018           50 LGIRFDKKTGD-LYIADAYLG-------------FQVVGPEGGLA--TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSS  113 (310)
Q Consensus        50 ~gl~~d~~~g~-l~v~~~~~g-------------i~~~d~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~  113 (310)
                      .++++++ +|+ |+.+.....             |++++..++..  +.+... .+. .....+++++|||++|+++...
T Consensus       171 ~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~-~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          171 ATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGD-PTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             CCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCC-TTCEEEEEECTTSCCEEEEEEE
T ss_pred             cceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCC-CEEEEEEEECCCCCEEEEEEeC
Confidence            5789999 665 555544322             88888877652  222221 111 1234578899999977766522


Q ss_pred             CchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec---CCceEEEEEccCCCCCcce
Q 046018          114 TSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET---SNCRILRFWLHGPNSGKQD  190 (310)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~---~~~~i~~~~~~~~~~~~~~  190 (310)
                      .              .....|+.++..++..+.+...........+ ++++ +|+...   .+.+|++++.+++......
T Consensus       248 ~--------------~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~  311 (695)
T 2bkl_A          248 G--------------WSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWK  311 (695)
T ss_dssp             T--------------TTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCE
T ss_pred             C--------------CCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCe
Confidence            0              0144688888766666666544333334443 7888 777644   2578999998653221122


Q ss_pred             eeee-CC-CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          191 VFAE-LP-GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       191 ~~~~-~~-~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      .+.. .+ ....+++++ ++.|+++....+..  + +...+..|+....+.++
T Consensus       312 ~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~--~-l~~~~~~g~~~~~l~~~  360 (695)
T 2bkl_A          312 EIVPEDSSASLLSVSIV-GGHLSLEYLKDATS--E-VRVATLKGKPVRTVQLP  360 (695)
T ss_dssp             EEECCCSSCEEEEEEEE-TTEEEEEEEETTEE--E-EEEEETTCCEEEECCCS
T ss_pred             EEecCCCCCeEEEEEEE-CCEEEEEEEECCEE--E-EEEEeCCCCeeEEecCC
Confidence            2221 11 122456666 56677766554421  1 33344456555555544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.29  E-value=0.0028  Score=50.91  Aligned_cols=102  Identities=7%  Similarity=-0.039  Sum_probs=65.3

Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC-------CeEEEEec-CCcccceEEEecCCC
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT-------KEVTILLQ-GLAFANGVALSRDRT  164 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-------~~~~~~~~-~~~~~~gi~~~~d~~  164 (310)
                      ....+++++|+|. ||...                   .|.|++.++.+       +..+.+-. +-..=..+.++++|.
T Consensus        41 ~~~~~laf~P~G~-LYaV~-------------------~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~  100 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGVL-------------------NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY  100 (236)
T ss_dssp             TTCSEEEECTTSC-EEEEE-------------------TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC
T ss_pred             ccceeEEECCCcc-EEEEe-------------------CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC
Confidence            4567999999999 99884                   77899999865       22222221 112235788999997


Q ss_pred             eEEEEecCCceEEEEEccCCCCCcc----eeeeeCC-CCCCeeEECCCCCEEEEEecCC
Q 046018          165 FILIAETSNCRILRFWLHGPNSGKQ----DVFAELP-GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       165 ~lyv~~~~~~~i~~~~~~~~~~~~~----~~~~~~~-~~p~~i~~d~~G~l~va~~~~~  218 (310)
                       ||++ +. +.|+++++-.......    ..+.+-. ..-..+.++++|.||.++ .+.
T Consensus       101 -LYav-~d-G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A          101 -LYAV-SK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             -EEEE-ET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred             -EEEe-CC-CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence             8988 43 8999997632111111    1111100 122678999999999998 543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.29  E-value=0.061  Score=51.12  Aligned_cols=170  Identities=8%  Similarity=0.057  Sum_probs=90.1

Q ss_pred             ceEEEeCCCCcEEEEECCC-------------ceEEEeCCCCeE--EEEEeecCCccccCCcceEEeCCCCEEEEEeCCC
Q 046018           50 LGIRFDKKTGDLYIADAYL-------------GFQVVGPEGGLA--TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST  114 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~-------------gi~~~d~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~  114 (310)
                      .+++++ ++..|+++....             .|++.+..+...  +.+... .........++.+++||++|+++....
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            467777 456677765541             277777655432  222221 110011235678999999887775321


Q ss_pred             chhhhhhhhhhhcCCCCceEEEEeCCCC--eEEEEecCCcccceEEEecCCCeEEEEecC---CceEEEEEccCCCCCcc
Q 046018          115 SFQRRQFMSSILSGDKTGRLLKYEKTTK--EVTILLQGLAFANGVALSRDRTFILIAETS---NCRILRFWLHGPNSGKQ  189 (310)
Q Consensus       115 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~---~~~i~~~~~~~~~~~~~  189 (310)
                                    .....|+.+|.+++  ..+.+......... .++++++.+|+....   +.+|++++++++.....
T Consensus       256 --------------~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~  320 (693)
T 3iuj_A          256 --------------TSGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHW  320 (693)
T ss_dssp             --------------SSCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             --------------CCCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence                          12357999997665  45555433222222 267888878776433   36899999875432222


Q ss_pred             eeeeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          190 DVFAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       190 ~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      +.+...  ..+.+.++++|+ |+++...++..   .+..++..+.....+.++
T Consensus       321 ~~l~~~--~~~~~~~s~~g~~lv~~~~~~g~~---~l~~~d~~g~~~~~l~~p  368 (693)
T 3iuj_A          321 RDLIPE--RQQVLTVHSGSGYLFAEYMVDATA---RVEQFDYEGKRVREVALP  368 (693)
T ss_dssp             EEEECC--CSSCEEEEEETTEEEEEEEETTEE---EEEEECTTSCEEEEECCS
T ss_pred             EEEecC--CCCEEEEEEECCEEEEEEEECCee---EEEEEECCCCeeEEeecC
Confidence            333221  122235566665 44444443311   145555566666655544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.26  E-value=0.045  Score=47.96  Aligned_cols=60  Identities=8%  Similarity=-0.054  Sum_probs=36.8

Q ss_pred             EEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018          157 VALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       157 i~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~  218 (310)
                      ..+.+ .++.+.++...++.|..||...+..  .............++++++|+++++...++
T Consensus       321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             CEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             EEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            34444 3444555666778999999875422  122222223347899999999877766655

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.25  E-value=0.012  Score=51.72  Aligned_cols=140  Identities=9%  Similarity=0.002  Sum_probs=81.2

Q ss_pred             EEEEEeCC----CCC-eEEEEEeccccccccCCCCCccccc-------------------cceeceEEEeCC-CCcEEEE
Q 046018           10 RILKWQGD----ELG-WTEFAVTTSQRKECVRPFAPDIEHI-------------------CGRPLGIRFDKK-TGDLYIA   64 (310)
Q Consensus        10 ~i~~~~~~----~~~-W~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~p~gl~~d~~-~g~l~v~   64 (310)
                      .|..+..+    ++. |+.....+|.+.+-.+..++.+...                   ....+.|++++. .+.||++
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg  195 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG  195 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence            45555443    333 9987777888876555444333211                   123457888863 4689999


Q ss_pred             ECCCceEEEeCCCCeEEEEEeecCC--cc------ccCCcceEEeCC--CCEEEEEeCCCchhhhhhhhhhhcCCCCceE
Q 046018           65 DAYLGFQVVGPEGGLATQLVTEAAG--QP------LRFTNDLDIDEH--KGVIYFTDSSTSFQRRQFMSSILSGDKTGRL  134 (310)
Q Consensus        65 ~~~~gi~~~d~~~~~~~~~~~~~~~--~~------~~~~~~i~~d~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v  134 (310)
                      ....+|++.+-.+...+.+......  .+      ...+..|+++++  +. +|++.                   .+.|
T Consensus       196 ~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~-l~vg~-------------------~~gl  255 (394)
T 3b7f_A          196 MSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDI-LYQQN-------------------HCGI  255 (394)
T ss_dssp             EETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTE-EEEEE-------------------TTEE
T ss_pred             ECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCE-EEEEc-------------------CCeE
Confidence            8776788876555555443211100  00      123567888886  55 99986                   4558


Q ss_pred             EEEeCCCCeEEEEecCCcc-----cceEEEec-CCCeEEEE
Q 046018          135 LKYEKTTKEVTILLQGLAF-----ANGVALSR-DRTFILIA  169 (310)
Q Consensus       135 ~~~d~~~~~~~~~~~~~~~-----~~gi~~~~-d~~~lyv~  169 (310)
                      ++.+-.+..++.+...+..     ...|+++| +...||++
T Consensus       256 ~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          256 YRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             EEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             EEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence            8887655666654332222     23466665 34558876

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.25  E-value=0.079  Score=45.66  Aligned_cols=75  Identities=8%  Similarity=0.089  Sum_probs=46.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....+++++ +|+++++....++..++.++.+.......      .....+++.++++.+.++...             
T Consensus        20 ~~V~~v~fs~-dg~~la~g~~~~~~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------------   79 (355)
T 3vu4_A           20 NPVTDYEFNQ-DQSCLILSTLKSFEIYNVHPVAHIMSQEM------RHLSKVRMLHRTNYVAFVTGV-------------   79 (355)
T ss_dssp             CCCCEEEECT-TSSEEEEECSSEEEEEEETTEEEEEEEEC------SCCCEEEECTTSSEEEEECSS-------------
T ss_pred             CceEEEEECC-CCCEEEEEcCCEEEEEecCCcceeeeeec------CCeEEEEEcCCCCEEEEEECC-------------
Confidence            4566899999 88877777777777778776543322111      124556777777734344322             


Q ss_pred             cCCCCceEEEEeCCCCeEE
Q 046018          127 SGDKTGRLLKYEKTTKEVT  145 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~  145 (310)
                          ++.|..||..+++..
T Consensus        80 ----d~~v~iWd~~~~~~~   94 (355)
T 3vu4_A           80 ----KEVVHIWDDVKKQDV   94 (355)
T ss_dssp             ----TTEEEEEETTTTEEE
T ss_pred             ----ccEEEEEECCCCcEE
Confidence                456777777666543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.23  E-value=0.13  Score=47.92  Aligned_cols=85  Identities=14%  Similarity=0.069  Sum_probs=45.9

Q ss_pred             ceEEeCCCCEEEEEeCCC-chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc-------ccce-EEEe---cCCC
Q 046018           97 DLDIDEHKGVIYFTDSST-SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA-------FANG-VALS---RDRT  164 (310)
Q Consensus        97 ~i~~d~~g~~l~v~~~~~-~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-------~~~g-i~~~---~d~~  164 (310)
                      .+++|++...+|++.... -|.......+   ....+.|+.+|+++|+..-......       .++. +.++   .||+
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd---~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~  321 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGD---NKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGK  321 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSC---CTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSC
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCC---ccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCc
Confidence            467888777688886431 1211100000   0013579999999998765332211       1122 2232   4563


Q ss_pred             --eEEEEecCCceEEEEEccCC
Q 046018          165 --FILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       165 --~lyv~~~~~~~i~~~~~~~~  184 (310)
                        .+++..+.++.|+.+|..++
T Consensus       322 ~~~~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          322 ARKLLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             EEEEEEEECTTSEEEEEETTTC
T ss_pred             EEEEEEEECCCcEEEEEECCCC
Confidence              35554567788888887644

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.23  E-value=0.024  Score=49.85  Aligned_cols=184  Identities=12%  Similarity=0.063  Sum_probs=102.7

Q ss_pred             CcEEEEEeCCC--CC--eEEEEEe----ccccccccCCCCCccccc--------------cceeceEEEeCC--CCcEEE
Q 046018            8 DGRILKWQGDE--LG--WTEFAVT----TSQRKECVRPFAPDIEHI--------------CGRPLGIRFDKK--TGDLYI   63 (310)
Q Consensus         8 ~~~i~~~~~~~--~~--W~~~~~~----~~~~~~~~~~~~~~~~~~--------------~~~p~gl~~d~~--~g~l~v   63 (310)
                      +..|..+..++  .+  |+.....    +|.+.+-.+..++.+...              ......|++++.  .+.||+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            44566666554  33  9876655    677765544444333211              013446888852  578999


Q ss_pred             EECCCceEEEeCCCCeEEEEEeec--C------------CccccCCcceEEeC--CCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           64 ADAYLGFQVVGPEGGLATQLVTEA--A------------GQPLRFTNDLDIDE--HKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        64 ~~~~~gi~~~d~~~~~~~~~~~~~--~------------~~~~~~~~~i~~d~--~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      +....+|++.+-.+...+.+....  .            .........|+++|  .++ +|++..               
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~-l~vg~~---------------  197 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKH-LYIGMS---------------  197 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTC-EEEEEE---------------
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCE-EEEEEC---------------
Confidence            987778998866555555442110  0            01112345788887  356 999862               


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCC-------------cccceEEEecC-CCeEEEEecCCceEEEEEccCCCCCcceeee
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGL-------------AFANGVALSRD-RTFILIAETSNCRILRFWLHGPNSGKQDVFA  193 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~-------------~~~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~  193 (310)
                         .+.|++.+-.+..++.+....             .....|+++|+ .+.||++.  .+.|++.+-.+.   ..+.+.
T Consensus       198 ---~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~---tW~~~~  269 (394)
T 3b7f_A          198 ---SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREG---VWKRIG  269 (394)
T ss_dssp             ---TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTT---EEECGG
T ss_pred             ---CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCC---cceECC
Confidence               355777765545565543211             12456788875 35688864  367888764332   122221


Q ss_pred             e-CCC----CCCeeEEC--CCCCEEEEEe
Q 046018          194 E-LPG----FPDNVRSN--SNGEFWVALH  215 (310)
Q Consensus       194 ~-~~~----~p~~i~~d--~~G~l~va~~  215 (310)
                      . ++.    ....++++  ..+.||++..
T Consensus       270 ~~l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          270 DAMPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             GGSCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             CCCCCCCccceEEEEECCCCCCEEEEEec
Confidence            1 221    11246777  4578999874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.14  E-value=0.098  Score=49.62  Aligned_cols=83  Identities=13%  Similarity=0.152  Sum_probs=52.5

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--CCCCeeEECCCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP--GFPDNVRSNSNG  208 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G  208 (310)
                      .|.|..+|+.+++............+..+..+++.+|++ +.++.|+.||..+++.-  -.+ ..+  ....-+.+..+|
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~l--w~~-~~~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKL--WEA-PTGTGVVAAPSTYMVDG  531 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEE--EEE-ECSSCCCSCCEEEEETT
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCCCcee--eee-eCCCCcccCCEEEEeCC
Confidence            478999999999876433322234566677777878877 67899999998754211  111 122  122335556789


Q ss_pred             CEEEEEecC
Q 046018          209 EFWVALHAK  217 (310)
Q Consensus       209 ~l~va~~~~  217 (310)
                      +.|++...+
T Consensus       532 ~~~v~~~~G  540 (677)
T 1kb0_A          532 RQYVSVAVG  540 (677)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            888887554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=97.11  E-value=0.044  Score=47.35  Aligned_cols=50  Identities=18%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             CceEEEEeCCCCeEEEEecCC-cccc-eEEEecCCCeEEEEecCCceEEEEEc
Q 046018          131 TGRLLKYEKTTKEVTILLQGL-AFAN-GVALSRDRTFILIAETSNCRILRFWL  181 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~-~~~~-gi~~~~d~~~lyv~~~~~~~i~~~~~  181 (310)
                      ++.|..||..+++......+. ..+. .++|+|||++|+ +.+.++.|.+|+.
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECCCcEEEecC
Confidence            778999999998765443332 2233 589999999554 5577899999874

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.02  E-value=0.22  Score=47.19  Aligned_cols=125  Identities=10%  Similarity=0.097  Sum_probs=71.4

Q ss_pred             eeceEEEeCCCCcE--EEEECCC----ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           48 RPLGIRFDKKTGDL--YIADAYL----GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        48 ~p~gl~~d~~~g~l--~v~~~~~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      ...++++++ +|+.  |..+..+    .|+.+|.++++.......     ......++.+ ||+.|+++.....-..   
T Consensus       130 ~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-----~~k~~~~~Ws-Dg~~l~y~~~~~~~~~---  199 (693)
T 3iuj_A          130 ALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-----DVKFSGISWL-GNEGFFYSSYDKPDGS---  199 (693)
T ss_dssp             EEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-----EEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             EEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-----CceeccEEEe-CCCEEEEEEecCcccc---
Confidence            456789999 7763  3333322    288889999875433111     1113567888 8887888764310000   


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeE--EEEecCCc----ccceEEEecCCCeEEEEecC---CceEEEEEccCC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEV--TILLQGLA----FANGVALSRDRTFILIAETS---NCRILRFWLHGP  184 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~--~~~~~~~~----~~~gi~~~~d~~~lyv~~~~---~~~i~~~~~~~~  184 (310)
                        ..-.......|++++..++..  +.+.....    .-.++.++|||++|+++...   ...|+.++.+++
T Consensus       200 --~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          200 --ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             --cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence              000001234588888765532  23333222    23478899999988775432   258999998653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.02  E-value=0.22  Score=46.35  Aligned_cols=71  Identities=17%  Similarity=0.177  Sum_probs=39.3

Q ss_pred             eeeccccccEEeeccchhhh-------hcccccCCCCceEEEEECC-CCCEEEEEEcCCCCeecceeEEEEeCCEEEEec
Q 046018          225 ILLNSWLGKTLLKLPLSFRQ-------LHSLLVGGKPHATAIKLSE-KGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGS  296 (310)
Q Consensus       225 i~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs  296 (310)
                      ...+..+|+.+.+.+.+...       ...+.|-+.....+.++|. +|+++-.+..+.+.. ..+. ....+|++||+.
T Consensus       469 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~-a~P~-~y~~~G~qYv~~  546 (582)
T 1flg_A          469 RAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV-SPPI-TWEQDGEQYLGV  546 (582)
T ss_dssp             EEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCE-EEEETTEEEEEE
T ss_pred             EEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcc-cCce-EEEECCEEEEEE
Confidence            44556678877665443211       1122333344456778885 588888877655432 2121 124788999885


Q ss_pred             C
Q 046018          297 V  297 (310)
Q Consensus       297 ~  297 (310)
                      .
T Consensus       547 ~  547 (582)
T 1flg_A          547 T  547 (582)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=97.01  E-value=0.14  Score=44.15  Aligned_cols=152  Identities=7%  Similarity=-0.086  Sum_probs=81.2

Q ss_pred             CCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE
Q 046018           58 TGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK  136 (310)
Q Consensus        58 ~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~  136 (310)
                      ++.++++...++ |..+|.++++........ .........++++|+|. +.++......     ...+..+..++.+..
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~-~~~v~~v~~vafSpdG~-~lvs~s~~~~-----~w~laSGs~D~tIkl  264 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHID-DSYQASVCHKAYSEMGL-LFIVLSHPCA-----KESESLRSPVFQLIV  264 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECC-C---CCCEEEEEEETTE-EEEEEC-----------------CCEEEEE
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCC-CcceeeeEEEEECCCCC-EEEEeccCCC-----cceeeccCCCcEEEE
Confidence            667788766655 777799988764443321 11123456778999998 5544322100     011223445778888


Q ss_pred             EeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCC-eeEECCCCCEE
Q 046018          137 YEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPD-NVRSNSNGEFW  211 (310)
Q Consensus       137 ~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~i~~d~~G~l~  211 (310)
                      ||+++++.....    +......-+..+.++. +.++.+.++.|.+||...++.  ...+..-...+. .++++|+|++.
T Consensus       265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          265 INPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             EETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCEEEECSSSSEE
T ss_pred             EECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEEECCCCCEE
Confidence            999988754322    1111111122233344 566666788999999875421  112211111223 47899999987


Q ss_pred             EEEecCCc
Q 046018          212 VALHAKKG  219 (310)
Q Consensus       212 va~~~~~~  219 (310)
                      ++....+.
T Consensus       342 aSGS~D~T  349 (356)
T 2w18_A          342 LAGQKDGN  349 (356)
T ss_dssp             EEECTTSC
T ss_pred             EEEECCCc
Confidence            77665554

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.00  E-value=0.0019  Score=59.20  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=52.1

Q ss_pred             ccceeceEEEeCCCCcEEEEECC-------------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEe
Q 046018           45 ICGRPLGIRFDKKTGDLYIADAY-------------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTD  111 (310)
Q Consensus        45 ~~~~p~gl~~d~~~g~l~v~~~~-------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~  111 (310)
                      .+..|.+|++++ +|.||+++..             ..+++++++++++++++..   +....+++++++||+++|||+.
T Consensus       474 ~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~---P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          474 MFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG---PIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC---CTTCEEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC---CCCccccCCEECCCCCEEEEEE
Confidence            458899999999 8999995542             1589999998988877653   2234689999999999999987


Q ss_pred             CC
Q 046018          112 SS  113 (310)
Q Consensus       112 ~~  113 (310)
                      .+
T Consensus       550 QH  551 (592)
T 4a9v_A          550 QH  551 (592)
T ss_dssp             ES
T ss_pred             eC
Confidence            54

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.96  E-value=0.00073  Score=59.26  Aligned_cols=181  Identities=12%  Similarity=0.075  Sum_probs=74.1

Q ss_pred             CcccccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCC
Q 046018            2 PYTGVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGG   78 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~   78 (310)
                      +|.+..++.+.+|+.....  |.-.. ..                    .....+.. ++.+|++... +.|+.+|.+++
T Consensus        12 v~~gs~dg~v~a~d~~tG~~~W~~~~-~~--------------------~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG   69 (369)
T 2hz6_A           12 LFVSTLDGSLHAVSKRTGSIKWTLKE-DP--------------------VLQVPTHV-EEPAFLPDPNDGSLYTLGSKNN   69 (369)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEC-CC--------------------SCCCC------CCEEECTTTCCEEEC-----
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEecC-CC--------------------ceecceEc-CCCEEEEeCCCCEEEEEECCCC
Confidence            4666677889999976665  76211 10                    00111123 4667776444 45888898776


Q ss_pred             eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEE
Q 046018           79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA  158 (310)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~  158 (310)
                      +....... ...... ....++..++. +|++.                  .++.|+.+|+++|+.......   +....
T Consensus        70 ~~~w~~~~-~~~~~~-~~sp~~~~~~~-v~~g~------------------~dg~v~a~D~~tG~~~w~~~~---~~~~~  125 (369)
T 2hz6_A           70 EGLTKLPF-TIPELV-QASPCRSSDGI-LYMGK------------------KQDIWYVIDLLTGEKQQTLSS---AFADS  125 (369)
T ss_dssp             CCSEECSC-CHHHHH-TTCSCC------CCCCE------------------EEEEEEEECCC------------------
T ss_pred             ceeeeeec-cCcccc-ccCceEecCCE-EEEEe------------------CCCEEEEEECCCCcEEEEecC---CCccc
Confidence            53211111 000000 01112223555 77654                  267899999998876532211   12344


Q ss_pred             EecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC----CCCEEEEEecCCccceeeeee-cccccc
Q 046018          159 LSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS----NGEFWVALHAKKGLFGKLILL-NSWLGK  233 (310)
Q Consensus       159 ~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~----~G~l~va~~~~~~~~~~~i~~-~~~~g~  233 (310)
                      ++|+++.+|++ +.++.|+.+|.+.++.-........    ...+++.    ++.+|++...+.      +.. +..+|+
T Consensus       126 ~~p~~~~v~~~-~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~------v~a~d~~tG~  194 (369)
T 2hz6_A          126 LSPSTSLLYLG-RTEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGL------VVTVDSESGD  194 (369)
T ss_dssp             -------EEEE-EEEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCE------EEEECTTTCC
T ss_pred             ccccCCEEEEE-ecCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCCE------EEEEECCCCc
Confidence            56677778876 4567899999875422111111111    1222332    367887765443      333 344677


Q ss_pred             EEeecc
Q 046018          234 TLLKLP  239 (310)
Q Consensus       234 ~~~~~~  239 (310)
                      .+....
T Consensus       195 ~~W~~~  200 (369)
T 2hz6_A          195 VLWIQN  200 (369)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            665543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.85  E-value=0.18  Score=47.91  Aligned_cols=82  Identities=15%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCC--CCCCeeEECCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELP--GFPDNVRSNSN  207 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~--~~p~~i~~d~~  207 (310)
                      .|.|..+|+.+|+............+-.+...+..+|++ +.++.|+.||.++++    .++. .++  ....-+.+..+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~----~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGE----KLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCc----cceeeeCCCCcccCceEEEEC
Confidence            478999999999876433222222333556667767766 678999999987542    1221 122  12233666678


Q ss_pred             CCEEEEEecC
Q 046018          208 GEFWVALHAK  217 (310)
Q Consensus       208 G~l~va~~~~  217 (310)
                      |+.||+...+
T Consensus       529 G~qyv~~~~G  538 (689)
T 1yiq_A          529 GEQYVTFMAG  538 (689)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999987755

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.82  E-value=0.35  Score=45.73  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=43.2

Q ss_pred             ceEEeCCCCEEEEEeCCC-chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC---------cccce-EEEecCCC-
Q 046018           97 DLDIDEHKGVIYFTDSST-SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL---------AFANG-VALSRDRT-  164 (310)
Q Consensus        97 ~i~~d~~g~~l~v~~~~~-~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---------~~~~g-i~~~~d~~-  164 (310)
                      .+++|++++.+|++.... .|.........-..-..+.|+.+|+++|+........         ..|-. ..+..|++ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            478998877688886432 1211000000000001346999999999876533221         11111 11223554 


Q ss_pred             -eEEEEecCCceEEEEEccCC
Q 046018          165 -FILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       165 -~lyv~~~~~~~i~~~~~~~~  184 (310)
                       .+++..+.++.|+.+|..++
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTC
T ss_pred             EEEEEEECCCCEEEEEECCCC
Confidence             12333356778888887643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.76  E-value=0.25  Score=43.16  Aligned_cols=98  Identities=14%  Similarity=0.068  Sum_probs=63.6

Q ss_pred             CceEEEeCCCCeEEEEEee--cCCccccCCcceEEeC--------CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           68 LGFQVVGPEGGLATQLVTE--AAGQPLRFTNDLDIDE--------HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        68 ~gi~~~d~~~~~~~~~~~~--~~~~~~~~~~~i~~d~--------~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      +.|..+|.+++........  ..+ -...+++|++.|        +|+ +.++.+.                 ++.|..|
T Consensus       111 ~~v~lw~~~~~~~~~~~~~~~~~g-H~~~v~~v~~~p~~~~~~~~d~~-~las~s~-----------------D~tv~~W  171 (393)
T 4gq1_A          111 NTVRLIITKNETIITQHVLGGKSG-HHNFVNDIDIADVYSADNRLAEQ-VIASVGD-----------------DCTLIIW  171 (393)
T ss_dssp             SCEEEEEEETTEEEEEEEECTTTS-CSSCEEEEEEEEEECTTCSEEEE-EEEEEET-----------------TSEEEEE
T ss_pred             CcEEEEECCCCccceeeeecccCC-CCCceEEEEEccccccccCCCCC-EEEEEEC-----------------CCeEEEE
Confidence            3477777777654332111  111 123578999987        787 6666543                 7789999


Q ss_pred             eCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          138 EKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       138 d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      |..++.... ..........++|+|++..++++...++.|..||...+
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            976554432 33333445789999998766666678899999998743

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.66  E-value=0.22  Score=47.10  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC--CCCeeEECCCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG--FPDNVRSNSNG  208 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G  208 (310)
                      .|.|+.+|+.+++............+..+...+..+|++ +.++.|+.+|.+.++.  .-.+ ..+.  ...-+....+|
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG~~--l~~~-~~~~~~~~~p~~~~~~G  512 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGEA--LWQF-EAQSGIVAAPMTFELAG  512 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCE--EEEE-ECSSCCCSCCEEEEETT
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhcChh--heEe-cCCCCcccCceEEEECC
Confidence            478999999999876433222233444555567767877 6789999999874321  1111 1211  11234445678


Q ss_pred             CEEEEEecC
Q 046018          209 EFWVALHAK  217 (310)
Q Consensus       209 ~l~va~~~~  217 (310)
                      ++|++...+
T Consensus       513 ~~yva~~~G  521 (668)
T 1kv9_A          513 RQYVAIMAG  521 (668)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999886654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.62  E-value=0.2  Score=44.67  Aligned_cols=115  Identities=9%  Similarity=0.055  Sum_probs=70.1

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..++++++.+.++++... +.|..+|.+++... ....  + ....+.+++++|+|++|+++.              
T Consensus       150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~--~-~~~~v~~v~wspdg~~lasgs--------------  211 (434)
T 2oit_A          150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATL--P-STVAVTSVCWSPKGKQLAVGK--------------  211 (434)
T ss_dssp             GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEE--C-GGGCEEEEEECTTSSCEEEEE--------------
T ss_pred             CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eecc--C-CCCceeEEEEcCCCCEEEEEc--------------
Confidence            457789999944676665444 44888898877432 1111  1 123578899999999555554              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCC-------cccceEEEecCCCeEEEEecCC------ceEEEEEccC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGL-------AFANGVALSRDRTFILIAETSN------CRILRFWLHG  183 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~-------~~~~gi~~~~d~~~lyv~~~~~------~~i~~~~~~~  183 (310)
                          .++.|..||........+....       .....+++++++.++......+      ..+..++...
T Consensus       212 ----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          212 ----QNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             ----TTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             ----CCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence                3778999998733233222111       1345788888776544433333      2377887764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.61  E-value=0.4  Score=44.55  Aligned_cols=83  Identities=10%  Similarity=0.122  Sum_probs=49.4

Q ss_pred             CCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCC--CCCeeEECC
Q 046018          130 KTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPG--FPDNVRSNS  206 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~--~p~~i~~d~  206 (310)
                      ..|.|+.+|+.+++............+-.+...+..+|++ +.++.|+.||.++++    .++. ..+.  ...-+.+..
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-~~dg~l~A~D~~tG~----~lW~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG-TGDGYFKAFDAKSGK----ELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE-CTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEE-CCCCcEEEEECCCCC----EEEEecCCCCcccCceEEEE
Confidence            3688999999998765422211122222233345557776 567899999987442    1221 1221  122366667


Q ss_pred             CCCEEEEEecC
Q 046018          207 NGEFWVALHAK  217 (310)
Q Consensus       207 ~G~l~va~~~~  217 (310)
                      +|+.||+...+
T Consensus       539 ~G~qYv~~~~G  549 (582)
T 1flg_A          539 DGEQYLGVTVG  549 (582)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEcc
Confidence            89999998776

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.45  E-value=0.04  Score=51.08  Aligned_cols=66  Identities=17%  Similarity=0.284  Sum_probs=43.7

Q ss_pred             cccceEEEecCCCeEEEEecC---------------------CceEEEEEccCCCCCc----ceeeee------------
Q 046018          152 AFANGVALSRDRTFILIAETS---------------------NCRILRFWLHGPNSGK----QDVFAE------------  194 (310)
Q Consensus       152 ~~~~gi~~~~d~~~lyv~~~~---------------------~~~i~~~~~~~~~~~~----~~~~~~------------  194 (310)
                      ..|.++.++|..+.+|++.+.                     .+.|++|++++.....    ...+..            
T Consensus       384 ~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~  463 (592)
T 3zwu_A          384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK  463 (592)
T ss_dssp             ECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred             eccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccccc
Confidence            347899999855559998664                     2579999876432111    111110            


Q ss_pred             ----------CCCCCCeeEECCCCCEEEEEecC
Q 046018          195 ----------LPGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       195 ----------~~~~p~~i~~d~~G~l~va~~~~  217 (310)
                                .-..||||++|+.|+|||++-.+
T Consensus       464 ~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~  496 (592)
T 3zwu_A          464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGD  496 (592)
T ss_dssp             GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCC
T ss_pred             ccccccCCCCCccCCcceEECCCCCEEEEecCC
Confidence                      01358999999999999998654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.29  E-value=0.15  Score=43.51  Aligned_cols=141  Identities=9%  Similarity=-0.005  Sum_probs=76.2

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCC-CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPE-GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ...++++++ ++.+|++.....+++-+-. +...+.+. ..   .......++++++++ +|+...              
T Consensus       164 ~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~---~~~~~~~~~~~~~g~-~~~~~~--------------  223 (327)
T 2xbg_A          164 VMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPHN-RT---TSRRLHNMGFTPDGR-LWMIVN--------------  223 (327)
T ss_dssp             CEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEEE-CC---SSSCEEEEEECTTSC-EEEEET--------------
T ss_pred             ceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeECC-CC---CCCccceeEECCCCC-EEEEeC--------------
Confidence            456788888 7888888766667776432 33444332 11   123467788999998 998762              


Q ss_pred             cCCCCceEEEEeCCCC-eEEEEecC-Ccc---cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---CCCC
Q 046018          127 SGDKTGRLLKYEKTTK-EVTILLQG-LAF---ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LPGF  198 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~-~~~~~~~~-~~~---~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~  198 (310)
                          .|.+++.+.+.+ ..+.+... +..   ...+++.+++. +|++.. .+.|++ ..+++..  ......   .+..
T Consensus       224 ----~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i~~-S~DgG~t--W~~~~~~~~~~~~  294 (327)
T 2xbg_A          224 ----GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGALLC-SQDGGQT--WQQDVDVKKVPSN  294 (327)
T ss_dssp             ----TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCEEE-ESSTTSS--CEECGGGTTSSSC
T ss_pred             ----CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeEEE-eCCCCcc--cEEcCccCCCCCC
Confidence                455666543322 23322211 111   24566777666 777643 456654 3444322  222221   1222


Q ss_pred             CCeeEECCCCCEEEEEecC
Q 046018          199 PDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~  217 (310)
                      -..+.+++++++|++...+
T Consensus       295 ~~~v~~~~~~~~~~~G~~G  313 (327)
T 2xbg_A          295 FYKILFFSPDQGFILGQKG  313 (327)
T ss_dssp             CCEEEEEETTEEEEECSTT
T ss_pred             eEEEEEECCCceEEEcCCc
Confidence            3567776667777665443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.85  E-value=0.0038  Score=54.61  Aligned_cols=102  Identities=12%  Similarity=0.161  Sum_probs=38.8

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC-CCeeEECCCCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF-PDNVRSNSNGE  209 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-p~~i~~d~~G~  209 (310)
                      ++.|+.||.++|+....... .......+..+++ +|++.+.++.|+.+|..+++....-.+ ..+.. ....++..++.
T Consensus        18 dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~-~~~~~~~~sp~~~~~~~   94 (369)
T 2hz6_A           18 DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPF-TIPELVQASPCRSSDGI   94 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSC-CHHHHHTTCSCC-----
T ss_pred             CCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeec-cCccccccCceEecCCE
Confidence            67899999988877643332 2222223344565 677667788999999864321100000 00000 01112224567


Q ss_pred             EEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          210 FWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       210 l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      +|++...+. +    ...+..+|+.+..+..
T Consensus        95 v~~g~~dg~-v----~a~D~~tG~~~w~~~~  120 (369)
T 2hz6_A           95 LYMGKKQDI-W----YVIDLLTGEKQQTLSS  120 (369)
T ss_dssp             CCCCEEEEE-E----EEECCC----------
T ss_pred             EEEEeCCCE-E----EEEECCCCcEEEEecC
Confidence            777665443 1    3334456777665543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=95.82  E-value=0.3  Score=42.86  Aligned_cols=152  Identities=11%  Similarity=0.015  Sum_probs=83.9

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCe---------EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGL---------ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~---------~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      ...-|++++ ...++++....++..++.+.-.         ++.....  ..+  .+..|++  +++.|+++.       
T Consensus        39 ~~nlLais~-~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp--~V~~l~f--d~~~L~v~~-------  104 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIP--DVIFVCF--HGDQVLVST-------  104 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECT--TEEEEEE--ETTEEEEEE-------
T ss_pred             cccEEEEcC-CCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe--eCC--CeeEEEE--CCCEEEEEc-------
Confidence            456799998 5555555555676666432211         1110011  111  2788999  777788874       


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeE-EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEV-TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG  197 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  197 (310)
                                  .+.|..||..+... .....-....+.+...+. . +.++ +.++.|++++......   ....   .
T Consensus       105 ------------~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~-~av~-~~dG~L~v~dl~~~~~---~~~~---~  163 (388)
T 1xip_A          105 ------------RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-T-LVIL-NSVNDLSALDLRTKST---KQLA---Q  163 (388)
T ss_dssp             ------------SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-E-EEEE-ETTSEEEEEETTTCCE---EEEE---E
T ss_pred             ------------CCcEEEEEchhhhccCccceeecceeeEEecCC-C-EEEE-ECCCCEEEEEccCCcc---cccc---C
Confidence                        57899998654321 111111111234433332 2 4444 5678999999874322   1121   1


Q ss_pred             CCCeeEECCCCCEEEEEecCCccceeeeeeccccccE---Eeeccch
Q 046018          198 FPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKT---LLKLPLS  241 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~---~~~~~~~  241 (310)
                      ....++++++| +.++...+.      +.++.+.+..   ...++.|
T Consensus       164 ~Vs~v~WSpkG-~~vg~~dg~------i~~~~~~~~~~~~k~~I~~P  203 (388)
T 1xip_A          164 NVTSFDVTNSQ-LAVLLKDRS------FQSFAWRNGEMEKQFEFSLP  203 (388)
T ss_dssp             SEEEEEECSSE-EEEEETTSC------EEEEEEETTEEEEEEEECCC
T ss_pred             CceEEEEcCCc-eEEEEcCCc------EEEEcCCCccccccceecCC
Confidence            35689999999 666655544      5666666655   5556554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.77  E-value=0.78  Score=38.95  Aligned_cols=142  Identities=11%  Similarity=0.010  Sum_probs=76.1

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .+..|+..+ ++++|++....+|++-.=.+...+.+...    .......++++++++ +|+...               
T Consensus       123 ~~~~i~~~~-~~~~~~~~~~g~v~~S~DgG~tW~~~~~~----~~~~~~~~~~~~~~~-~~~~g~---------------  181 (327)
T 2xbg_A          123 SPRLIKALG-NGSAEMITNVGAIYRTKDSGKNWQALVQE----AIGVMRNLNRSPSGE-YVAVSS---------------  181 (327)
T ss_dssp             CEEEEEEEE-TTEEEEEETTCCEEEESSTTSSEEEEECS----CCCCEEEEEECTTSC-EEEEET---------------
T ss_pred             CeEEEEEEC-CCCEEEEeCCccEEEEcCCCCCCEEeecC----CCcceEEEEEcCCCc-EEEEEC---------------
Confidence            455677666 67888887655566643223344433221    112456788888888 776652               


Q ss_pred             CCCCceEEEEeCC-CCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-e-CCC--CCCe
Q 046018          128 GDKTGRLLKYEKT-TKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-E-LPG--FPDN  201 (310)
Q Consensus       128 ~~~~g~v~~~d~~-~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~--~p~~  201 (310)
                         .|.+++-+-. ....+.+... ......++++++++ +|++. ..+.+++.+.+++.  ....+. . ++.  ....
T Consensus       182 ---~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~-~~G~~~~s~~D~G~--tW~~~~~~~~~~~~~~~~  254 (327)
T 2xbg_A          182 ---RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIV-NGGKIAFSDPDNSE--NWGELLSPLRRNSVGFLD  254 (327)
T ss_dssp             ---TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEEEE-TTTEEEEEETTEEE--EECCCBCTTSSCCSCEEE
T ss_pred             ---CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEEEe-CCceEEEecCCCCC--eeEeccCCcccCCcceEE
Confidence               4566665422 2344443221 22345788888887 77663 34666665434221  011111 0 111  1234


Q ss_pred             eEECCCCCEEEEEecC
Q 046018          202 VRSNSNGEFWVALHAK  217 (310)
Q Consensus       202 i~~d~~G~l~va~~~~  217 (310)
                      +++++++.+|++...+
T Consensus       255 v~~~~~~~~~~~g~~g  270 (327)
T 2xbg_A          255 LAYRTPNEVWLAGGAG  270 (327)
T ss_dssp             EEESSSSCEEEEESTT
T ss_pred             EEecCCCEEEEEeCCC
Confidence            6677788888886543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.75  E-value=0.066  Score=48.95  Aligned_cols=88  Identities=13%  Similarity=0.105  Sum_probs=62.8

Q ss_pred             eEEEEeCCC-----CeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC------CCC-Ccce-eeee--CCC
Q 046018          133 RLLKYEKTT-----KEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG------PNS-GKQD-VFAE--LPG  197 (310)
Q Consensus       133 ~v~~~d~~~-----~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~------~~~-~~~~-~~~~--~~~  197 (310)
                      .|-.+|...     ..+....+....|+|+-++|||++++++.-.+..+.+|+.+.      .+. .... +.++  +.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            466777654     134444556778999999999999999999999999999862      111 1111 2222  334


Q ss_pred             CCCeeEECCCCCEEEEEecCCcc
Q 046018          198 FPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       198 ~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                      .|-..++|++|+.|.+.+-..++
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEE
T ss_pred             cccEEEECCCCceEeeeeecceE
Confidence            68889999999999998877763

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.88  E-value=0.43  Score=44.90  Aligned_cols=116  Identities=11%  Similarity=0.123  Sum_probs=73.1

Q ss_pred             eeceEEEeCCCCcEEEEECC------------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCc
Q 046018           48 RPLGIRFDKKTGDLYIADAY------------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS  115 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~  115 (310)
                      .++..++.+.+|+||+....            ..+.++|+.+++.+.+...+. .......++++..+|+ ||+..-.  
T Consensus       187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~~g~-lyv~GG~--  262 (656)
T 1k3i_A          187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDGNGQ-IVVTGGN--  262 (656)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECTTSC-EEEECSS--
T ss_pred             CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCCCCCC-EEEeCCC--
Confidence            45567776546889987421            127788999887654433211 1112334577788999 9987622  


Q ss_pred             hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEec-CC-----ceEEEEEccC
Q 046018          116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAET-SN-----CRILRFWLHG  183 (310)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~-~~-----~~i~~~~~~~  183 (310)
                                    ....+++||+.+.+++.+.. +..+   ...++.+|++ +|+..- .+     ..+++||+..
T Consensus       263 --------------~~~~v~~yd~~t~~W~~~~~-~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          263 --------------DAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             --------------STTCEEEEEGGGTEEEECCC-CSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             --------------CCCceEEecCcCCceeECCC-CCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCC
Confidence                          23469999999888876542 2222   3566667887 777543 22     5789999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.82  E-value=0.58  Score=44.87  Aligned_cols=105  Identities=9%  Similarity=0.137  Sum_probs=60.9

Q ss_pred             CcceEEe-CCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC-eEEEEecCCc-ccceEEEecCCCeEEEEec
Q 046018           95 TNDLDID-EHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK-EVTILLQGLA-FANGVALSRDRTFILIAET  171 (310)
Q Consensus        95 ~~~i~~d-~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~  171 (310)
                      ....+++ |||++|.++....             +.....|+.+|.+++ +..  ..... ...+++|+||++.|+++..
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~-------------G~~~~~l~v~dl~~g~~~l--~~~~~~~~~~~~WspDg~~l~y~~~  240 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMS-------------GNEVYTIEFKRISDPSQTI--ADKVSGTNGEIVWGPDHTSLFYVTK  240 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESS-------------SSSCEEEEEEETTCTTCCC--CCCEEEECSCCEECSSTTEEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeCC-------------CCceEEEEEEECCCCCEeC--CccccCceeeEEEecCCCEEEEEEE
Confidence            4568899 9999777665321             112345999999887 521  11111 1357899999988877644


Q ss_pred             CC----ceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCC-EEEEE
Q 046018          172 SN----CRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGE-FWVAL  214 (310)
Q Consensus       172 ~~----~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~-l~va~  214 (310)
                      ..    ..|+++++.++......++.. ....-.++.+++||+ |.+..
T Consensus       241 d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          241 DETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             CTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence            21    478888876542211122222 112223567889996 44444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.27  E-value=2.6  Score=40.33  Aligned_cols=116  Identities=5%  Similarity=0.041  Sum_probs=69.1

Q ss_pred             eceEEEe-CCCCc-EEEEECCC-----ceEEEeCCCC-eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018           49 PLGIRFD-KKTGD-LYIADAYL-----GFQVVGPEGG-LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ  120 (310)
Q Consensus        49 p~gl~~d-~~~g~-l~v~~~~~-----gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~  120 (310)
                      ..+.+++ + +|+ |.++....     .|+++|.+++ +.  +...   ... ...+++.+|||+.|+++.....     
T Consensus       176 ~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~---~~~-~~~~~~WspDg~~l~y~~~d~~-----  243 (751)
T 2xe4_A          176 VMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADK---VSG-TNGEIVWGPDHTSLFYVTKDET-----  243 (751)
T ss_dssp             EEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCC---EEE-ECSCCEECSSTTEEEEEEECTT-----
T ss_pred             EeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCcc---ccC-ceeeEEEecCCCEEEEEEECCC-----
Confidence            4567899 8 665 43333321     2888999887 52  1110   011 2357899999987887753210     


Q ss_pred             hhhhhhcCCCCceEEEEeCCCCeE--EEEe--cCCcccceEEEecCCCeEEEEec--CCceEEEEEccCC
Q 046018          121 FMSSILSGDKTGRLLKYEKTTKEV--TILL--QGLAFANGVALSRDRTFILIAET--SNCRILRFWLHGP  184 (310)
Q Consensus       121 ~~~~~~~~~~~g~v~~~d~~~~~~--~~~~--~~~~~~~gi~~~~d~~~lyv~~~--~~~~i~~~~~~~~  184 (310)
                              .....|++++..++..  +.+.  .....-.++.++|||+.|+++..  ....|+.++.+++
T Consensus       244 --------~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          244 --------LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             --------CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             --------CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence                    0124688898876532  2222  11223356789999998877543  3458899988753

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.03  E-value=2.6  Score=36.11  Aligned_cols=106  Identities=11%  Similarity=0.095  Sum_probs=55.1

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecC--CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAA--GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL  135 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~  135 (310)
                      ++.|||++..+.|+.+|.++|+.. ......  .+... ...-+...++. +|+....                .+|.|+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~-W~~~~~~~~p~~~-~~~~~~~~~~~-~~vv~p~----------------~dG~l~   70 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHII-WSIEPENFQPLIE-IQEPSRLETYE-TLIIEPF----------------GDGNIY   70 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEE-EEECGGGSCCSEE-CCCSCTTTSSE-EEEECCS----------------TTTEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEE-EEecCCccCCcEE-ecCCccccCCc-EEEEEEC----------------CCCEEE
Confidence            457888888777888888888743 211111  01110 00000012444 7766421                388999


Q ss_pred             EEeCCCCeEEEEe--cCCcccceEE------E------ecCCCeEEEEecCCceEEEEEccCC
Q 046018          136 KYEKTTKEVTILL--QGLAFANGVA------L------SRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       136 ~~d~~~~~~~~~~--~~~~~~~gi~------~------~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      .++.++|..+.-.  ..+.....+.      +      +.+ ..+|+. +.+++++.+|...+
T Consensus        71 a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~G-s~~g~l~ald~~tG  131 (339)
T 2be1_A           71 YFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVED-EKVYTG-SMRTIMYTINMLNG  131 (339)
T ss_dssp             EEETTTEEEEEEEEHHHHHTTCSEEEECC----------CC-EEEEEC-EEEEEEEEEETTTC
T ss_pred             EEECCCCcEEeeeccccceeccccccCCCceeecccccccC-CEEEEE-ecCCEEEEEECCCC
Confidence            9998877444211  1111111111      1      123 346765 67789999998754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.66  E-value=2.6  Score=34.88  Aligned_cols=141  Identities=13%  Similarity=0.036  Sum_probs=73.5

Q ss_pred             eEEEeCCCCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           51 GIRFDKKTGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      +++..  +++||+....      ..+.++|+.+.+.+.+...+.    .....-++.-+++ ||+..-....        
T Consensus       103 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~----~r~~~~~~~~~~~-iyv~GG~~~~--------  167 (302)
T 2xn4_A          103 GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT----RRSSVGVGVVGGL-LYAVGGYDVA--------  167 (302)
T ss_dssp             EEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS----CCBSCEEEEETTE-EEEECCEETT--------
T ss_pred             EEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC----cccCceEEEECCE-EEEEeCCCCC--------
Confidence            44443  5788887542      138889999988766533211    1122223334666 8887521000        


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcc--cceEEEecCCCeEEEEecC-----CceEEEEEccCCCCCcceeeeeCC-
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAF--ANGVALSRDRTFILIAETS-----NCRILRFWLHGPNSGKQDVFAELP-  196 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~-  196 (310)
                        .......+++||+++.+.+.+......  ...++.. +++ ||+..-.     .+.+++||+...   ....+...+ 
T Consensus       168 --~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~~~  240 (302)
T 2xn4_A          168 --SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNL-LYAVGGHDGPLVRKSVEVYDPTTN---AWRQVADMNM  240 (302)
T ss_dssp             --TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCBSSSSBCCCEEEEETTTT---EEEEECCCSS
T ss_pred             --CCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCE-EEEECCCCCCcccceEEEEeCCCC---CEeeCCCCCC
Confidence              000134699999999988876432111  1233333 444 7776422     357999998643   233333322 


Q ss_pred             -CCCCeeEECCCCCEEEEE
Q 046018          197 -GFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       197 -~~p~~i~~d~~G~l~va~  214 (310)
                       ..-..++. -+|.||+..
T Consensus       241 ~r~~~~~~~-~~~~i~v~G  258 (302)
T 2xn4_A          241 CRRNAGVCA-VNGLLYVVG  258 (302)
T ss_dssp             CCBSCEEEE-ETTEEEEEC
T ss_pred             ccccCeEEE-ECCEEEEEC
Confidence             11123333 256777754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.39  E-value=2.9  Score=34.55  Aligned_cols=106  Identities=14%  Similarity=0.111  Sum_probs=62.1

Q ss_pred             CCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018           58 TGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT  131 (310)
Q Consensus        58 ~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (310)
                      +++||+....      ..+.++|+.+.+.+.+...+..    ....-++.-+++ ||+..-...            ....
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~~~~~~~~~~-iyv~GG~~~------------~~~~  174 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA----REGAGLVVASGV-IYCLGGYDG------------LNIL  174 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC----CBSCEEEEETTE-EEEECCBCS------------SCBC
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC----cccceEEEECCE-EEEECCCCC------------Cccc
Confidence            5789988642      2388999999887766443211    122223333666 888752110            0124


Q ss_pred             ceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC-----CceEEEEEccC
Q 046018          132 GRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS-----NCRILRFWLHG  183 (310)
Q Consensus       132 g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~  183 (310)
                      ..+++||+++.+.+.+.. .+.+   ..++.. ++ .||+..-.     .+.+++||+..
T Consensus       175 ~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          175 NSVEKYDPHTGHWTNVTP-MATKRSGAGVALL-ND-HIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             CCEEEEETTTTEEEEECC-CSSCCBSCEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred             ceEEEEeCCCCcEEeCCC-CCcccccceEEEE-CC-EEEEEeCCCCCcccceEEEEeCCC
Confidence            569999999998887642 2222   233333 44 47776432     35799999864

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.29  E-value=3.6  Score=37.76  Aligned_cols=106  Identities=5%  Similarity=-0.023  Sum_probs=67.2

Q ss_pred             cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC------CeE-------EEEecCCcccceEEE
Q 046018           93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT------KEV-------TILLQGLAFANGVAL  159 (310)
Q Consensus        93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~------~~~-------~~~~~~~~~~~gi~~  159 (310)
                      .+|.++-++|||++++++.-.                 +..+..++.+.      ++.       ....+....|-..+|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKL-----------------sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~F  385 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKL-----------------SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTF  385 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTT-----------------SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCC-----------------CCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEE
Confidence            479999999999977777632                 44555555431      011       111223456888999


Q ss_pred             ecCCCeEEEEecCCceEEEEEccC-------CCCCcceeee--eCCCCCCee------EECCCCCEEEEEecCC
Q 046018          160 SRDRTFILIAETSNCRILRFWLHG-------PNSGKQDVFA--ELPGFPDNV------RSNSNGEFWVALHAKK  218 (310)
Q Consensus       160 ~~d~~~lyv~~~~~~~i~~~~~~~-------~~~~~~~~~~--~~~~~p~~i------~~d~~G~l~va~~~~~  218 (310)
                      +++| ..|.+..-+.+|.+|+++.       .+..  .++.  +....|.-+      ..+++|...++.+...
T Consensus       386 d~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~--~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~s  456 (638)
T 3sbq_A          386 DGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVN--YIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFS  456 (638)
T ss_dssp             CSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCC--CEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCC
T ss_pred             CCCC-ceEeeeeecceEEEEeccHHHHHhcCccCC--eeeeccccccCCcccccCCCccCCCCccEEEEecccc
Confidence            9998 5999988889999999863       1111  1221  122233333      4589999888877543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.46  E-value=4.1  Score=33.92  Aligned_cols=170  Identities=8%  Similarity=-0.001  Sum_probs=86.9

Q ss_pred             cEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC--------C----ceEEEeCC
Q 046018            9 GRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY--------L----GFQVVGPE   76 (310)
Q Consensus         9 ~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~--------~----gi~~~d~~   76 (310)
                      ..+..+++..+.|..  .. +.     .       .....-+.++. - ++.||+....        .    .++++|+.
T Consensus        13 ~~~~~yd~~~~~W~~--~~-~~-----~-------p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~   75 (315)
T 4asc_A           13 EGAVAYDPAANECYC--AS-LS-----S-------QVPKNHVSLVT-K-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHL   75 (315)
T ss_dssp             TEEEEEETTTTEEEE--EE-CC-----C-------CSCSSEEEEEC-T-TCCEEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred             CceEEECCCCCeEec--CC-CC-----C-------CCCccceEEEE-E-CCEEEEEcCcccCCCCCccccccceEEecCC
Confidence            578888998777873  11 00     0       00011223333 3 6788876541        1    17889999


Q ss_pred             CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc--
Q 046018           77 GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA--  154 (310)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~--  154 (310)
                      +.+.+.+...+..   ..-..++. -+++ ||+..-.....         .......+++||+.+.+.+.+.. .+.+  
T Consensus        76 ~~~W~~~~~~p~~---r~~~~~~~-~~~~-lyv~GG~~~~~---------~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~  140 (315)
T 4asc_A           76 DSEWLGMPPLPSP---RCLFGLGE-ALNS-IYVVGGREIKD---------GERCLDSVMCYDRLSFKWGESDP-LPYVVY  140 (315)
T ss_dssp             TTEEEECCCBSSC---EESCEEEE-ETTE-EEEECCEESST---------TCCBCCCEEEEETTTTEEEECCC-CSSCCB
T ss_pred             CCeEEECCCCCcc---hhceeEEE-ECCE-EEEEeCCcCCC---------CCcccceEEEECCCCCcEeECCC-CCCccc
Confidence            8887655332111   11122333 3566 88875310000         01124569999999988887543 2222  


Q ss_pred             -ceEEEecCCCeEEEEecC------CceEEEEEccCCCCCcceeeeeCC--CCCCeeEECCCCCEEEEEec
Q 046018          155 -NGVALSRDRTFILIAETS------NCRILRFWLHGPNSGKQDVFAELP--GFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       155 -~gi~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~l~va~~~  216 (310)
                       ...+. -+++ ||+..-.      .+.+++||+...   ....+...|  ..-..+++ -++.||+....
T Consensus       141 ~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~  205 (315)
T 4asc_A          141 GHTVLS-HMDL-VYVIGGKGSDRKCLNKMCVYDPKKF---EWKELAPMQTARSLFGATV-HDGRIIVAAGV  205 (315)
T ss_dssp             SCEEEE-ETTE-EEEECCBCTTSCBCCCEEEEETTTT---EEEECCCCSSCCBSCEEEE-ETTEEEEEEEE
T ss_pred             ceeEEE-ECCE-EEEEeCCCCCCcccceEEEEeCCCC---eEEECCCCCCchhceEEEE-ECCEEEEEecc
Confidence             23333 3454 8876432      257999998743   222332222  11123333 25788886443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.43  E-value=4.1  Score=33.83  Aligned_cols=106  Identities=12%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             CCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018           58 TGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT  131 (310)
Q Consensus        58 ~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (310)
                      +++||+....      ..+.++|+.+.+.+.+...+..   .....+++. +++ ||+..-...            ....
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~-~~~-iyv~GG~~~------------~~~~  183 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR---RIGVGVAVL-NRL-LYAVGGFDG------------TNRL  183 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC---CBSCEEEEE-TTE-EEEECCBCS------------SCBC
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc---ccceEEEEE-CCE-EEEEeCCCC------------CCcC
Confidence            5789988542      2488999998887655332111   122233333 666 888752110            0114


Q ss_pred             ceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC-----CceEEEEEccC
Q 046018          132 GRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS-----NCRILRFWLHG  183 (310)
Q Consensus       132 g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~  183 (310)
                      ..+++||+++.+.+.+.. .+.+   ..++.. +++ ||+..-.     ...+++||+..
T Consensus       184 ~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          184 NSAECYYPERNEWRMITA-MNTIRSGAGVCVL-HNC-IYAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             CCEEEEETTTTEEEECCC-CSSCCBSCEEEEE-TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred             ceEEEEeCCCCeEeeCCC-CCCccccceEEEE-CCE-EEEEeCCCCCCccceEEEEeCCC
Confidence            569999999988886542 2222   233333 444 7776422     36799999874

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.15  E-value=4.4  Score=33.52  Aligned_cols=139  Identities=12%  Similarity=0.097  Sum_probs=73.1

Q ss_pred             CCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           58 TGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        58 ~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      +++||+....       ..+.++|+.+.+.+.+...+    ......-++.-+++ ||+..-......        ....
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~-iyv~GG~~~~~~--------~~~~  167 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML----TQRCSHGMVEANGL-IYVCGGSLGNNV--------SGRV  167 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS----SCCBSCEEEEETTE-EEEECCEESCTT--------TCEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc----CCcceeEEEEECCE-EEEECCCCCCCC--------cccc
Confidence            5789987542       23899999998876653321    11222233334666 888752110000        0001


Q ss_pred             CceEEEEeCCCCeEEEEecCCcc--cceEEEecCCCeEEEEecC-----CceEEEEEccCCCCCcceeeeeCC--CCCCe
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAF--ANGVALSRDRTFILIAETS-----NCRILRFWLHGPNSGKQDVFAELP--GFPDN  201 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~  201 (310)
                      ...+++||+++.+.+.+......  ...++.. +++ ||+..-.     ...+++||+...   ....+..+|  ..-..
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~  242 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDK-IFAVGGQNGLGGLDNVEYYDIKLN---EWKMVSPMPWKGVTVK  242 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEETTEEBCCEEEEETTTT---EEEECCCCSCCBSCCE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCE-EEEEeCCCCCCCCceEEEeeCCCC---cEEECCCCCCCcccee
Confidence            45699999999988876532111  1234433 444 7776321     357899998643   223333322  11122


Q ss_pred             eEECCCCCEEEEEe
Q 046018          202 VRSNSNGEFWVALH  215 (310)
Q Consensus       202 i~~d~~G~l~va~~  215 (310)
                      +++- ++.||+...
T Consensus       243 ~~~~-~~~i~v~GG  255 (306)
T 3ii7_A          243 CAAV-GSIVYVLAG  255 (306)
T ss_dssp             EEEE-TTEEEEEEC
T ss_pred             EEEE-CCEEEEEeC
Confidence            3332 567887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.96  E-value=4.7  Score=33.47  Aligned_cols=134  Identities=13%  Similarity=0.042  Sum_probs=71.4

Q ss_pred             CCcEEEEECC----------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           58 TGDLYIADAY----------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        58 ~g~l~v~~~~----------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      +++||+....          ..++++|+.+.+.+.+...+    .......++.-+++ ||+..-...            
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~-iyv~GG~~~------------  132 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS----VPRNRIGVGVIDGH-IYAVGGSHG------------  132 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS----SCCBTCEEEEETTE-EEEECCEET------------
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCC----cCccccEEEEECCE-EEEEcCCCC------------
Confidence            5788887543          23889999988876553221    11222233333666 888742100            


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCcc--cceEEEecCCCeEEEEecC-----CceEEEEEccCCCCCcceeeeeCC--CC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLAF--ANGVALSRDRTFILIAETS-----NCRILRFWLHGPNSGKQDVFAELP--GF  198 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~--~~  198 (310)
                      ......+++||+.+.+.+.+......  ....+.. ++ .||+..-.     .+.+++||+...   ....+...+  ..
T Consensus       133 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~  207 (308)
T 1zgk_A          133 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NR-LLYAVGGFDGTNRLNSAECYYPERN---EWRMITAMNTIRS  207 (308)
T ss_dssp             TEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTTT---EEEECCCCSSCCB
T ss_pred             CcccccEEEECCCCCeEeECCCCCccccceEEEEE-CC-EEEEEeCCCCCCcCceEEEEeCCCC---eEeeCCCCCCccc
Confidence            00134689999999888875432211  1233333 44 47775321     357999998643   222222222  11


Q ss_pred             CCeeEECCCCCEEEEE
Q 046018          199 PDNVRSNSNGEFWVAL  214 (310)
Q Consensus       199 p~~i~~d~~G~l~va~  214 (310)
                      -..+++. ++.||+..
T Consensus       208 ~~~~~~~-~~~iyv~G  222 (308)
T 1zgk_A          208 GAGVCVL-HNCIYAAG  222 (308)
T ss_dssp             SCEEEEE-TTEEEEEC
T ss_pred             cceEEEE-CCEEEEEe
Confidence            2233333 57788764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.94  E-value=4.8  Score=33.55  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             CCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018           58 TGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK  130 (310)
Q Consensus        58 ~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~  130 (310)
                      +++||+....       ..+.++|+.+.+.+.+...+..   .....++ .-+++ ||+..-...            ...
T Consensus       158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~-~~~~~-iyv~GG~~~------------~~~  220 (318)
T 2woz_A          158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP---RSMFGVA-IHKGK-IVIAGGVTE------------DGL  220 (318)
T ss_dssp             TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC---CBSCEEE-EETTE-EEEEEEEET------------TEE
T ss_pred             CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC---cccceEE-EECCE-EEEEcCcCC------------CCc
Confidence            6789987642       2389999999887665322111   1122233 33566 887752100            001


Q ss_pred             CceEEEEeCCCCeEEEEe
Q 046018          131 TGRLLKYEKTTKEVTILL  148 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~  148 (310)
                      ...+++||+++.+.+.+.
T Consensus       221 ~~~~~~yd~~~~~W~~~~  238 (318)
T 2woz_A          221 SASVEAFDLKTNKWEVMT  238 (318)
T ss_dssp             EEEEEEEETTTCCEEECC
T ss_pred             cceEEEEECCCCeEEECC
Confidence            346889999998888754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=91.73  E-value=4.9  Score=33.16  Aligned_cols=134  Identities=10%  Similarity=-0.005  Sum_probs=71.8

Q ss_pred             CCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018           58 TGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT  131 (310)
Q Consensus        58 ~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~  131 (310)
                      ++.||+....      ..+.++|+.+.+.+.+...+    ......-++.-+++ ||+..-...            ....
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----~~r~~~~~~~~~~~-iyv~GG~~~------------~~~~  123 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR----DRRSTLGAAVLNGL-LYAVGGFDG------------STGL  123 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS----SCCBSCEEEEETTE-EEEEEEECS------------SCEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC----ccccceEEEEECCE-EEEEcCCCC------------CccC
Confidence            5789987542      23899999998877654321    11222223334666 887642100            0113


Q ss_pred             ceEEEEeCCCCeEEEEecCCcc--cceEEEecCCCeEEEEecC-------CceEEEEEccCCCCCcceeeeeCC--CCCC
Q 046018          132 GRLLKYEKTTKEVTILLQGLAF--ANGVALSRDRTFILIAETS-------NCRILRFWLHGPNSGKQDVFAELP--GFPD  200 (310)
Q Consensus       132 g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~~d~~~lyv~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~--~~p~  200 (310)
                      ..+++||+.+.+.+.+......  ...++.. +++ ||+..-.       ...+++||+...   ....+...|  ..-.
T Consensus       124 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~  198 (302)
T 2xn4_A          124 SSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGL-LYAVGGYDVASRQCLSTVECYNATTN---EWTYIAEMSTRRSGA  198 (302)
T ss_dssp             EEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEETTTTEECCCEEEEETTTT---EEEEECCCSSCCBSC
T ss_pred             ceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCE-EEEEeCCCCCCCccccEEEEEeCCCC---cEEECCCCccccccc
Confidence            4689999999988876432211  1233333 444 8875321       356899998643   223333322  1112


Q ss_pred             eeEECCCCCEEEEE
Q 046018          201 NVRSNSNGEFWVAL  214 (310)
Q Consensus       201 ~i~~d~~G~l~va~  214 (310)
                      .+++ -++.||+..
T Consensus       199 ~~~~-~~~~iyv~G  211 (302)
T 2xn4_A          199 GVGV-LNNLLYAVG  211 (302)
T ss_dssp             EEEE-ETTEEEEEC
T ss_pred             cEEE-ECCEEEEEC
Confidence            3333 257788764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.53  E-value=5.2  Score=33.07  Aligned_cols=133  Identities=8%  Similarity=-0.034  Sum_probs=72.7

Q ss_pred             CCcEEEEECC-----CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCc
Q 046018           58 TGDLYIADAY-----LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTG  132 (310)
Q Consensus        58 ~g~l~v~~~~-----~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g  132 (310)
                      ++.||+....     ..+.++|+.+.+.+.+...+.    ......++.-+++ ||+..-...           ......
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~----~r~~~~~~~~~~~-iyv~GG~~~-----------~~~~~~  118 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT----PRDSLAACAAEGK-IYTSGGSEV-----------GNSALY  118 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS----CCBSCEEEEETTE-EEEECCBBT-----------TBSCCC
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc----cccceeEEEECCE-EEEECCCCC-----------CCcEee
Confidence            5788887542     248899999988776643221    1222233333666 888652210           011245


Q ss_pred             eEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC---------CceEEEEEccCCCCCcceeeeeCC--CC
Q 046018          133 RLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS---------NCRILRFWLHGPNSGKQDVFAELP--GF  198 (310)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~--~~  198 (310)
                      .+++||+.+.+.+.+.. .+.+   ..++.. +++ ||+..-.         .+.+++||+...   ....+...+  ..
T Consensus       119 ~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~  192 (306)
T 3ii7_A          119 LFECYDTRTESWHTKPS-MLTQRCSHGMVEA-NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATE---TWTELCPMIEARK  192 (306)
T ss_dssp             CEEEEETTTTEEEEECC-CSSCCBSCEEEEE-TTE-EEEECCEESCTTTCEECCCEEEEETTTT---EEEEECCCSSCCB
T ss_pred             eEEEEeCCCCceEeCCC-CcCCcceeEEEEE-CCE-EEEECCCCCCCCcccccceEEEeCCCCC---eEEECCCccchhh
Confidence            69999999998887643 2222   233333 454 8775421         467899998743   233333322  12


Q ss_pred             CCeeEECCCCCEEEE
Q 046018          199 PDNVRSNSNGEFWVA  213 (310)
Q Consensus       199 p~~i~~d~~G~l~va  213 (310)
                      -..+++- ++.||+.
T Consensus       193 ~~~~~~~-~~~i~v~  206 (306)
T 3ii7_A          193 NHGLVFV-KDKIFAV  206 (306)
T ss_dssp             SCEEEEE-TTEEEEE
T ss_pred             cceEEEE-CCEEEEE
Confidence            2233332 5678875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=91.42  E-value=9.2  Score=35.74  Aligned_cols=57  Identities=9%  Similarity=0.007  Sum_probs=36.4

Q ss_pred             eEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeC
Q 046018           51 GIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDS  112 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~  112 (310)
                      +.++.. +|+||+.....  .+.++|+.+.+.+.+.... .  ...-..+++.++|+ ||+..-
T Consensus       247 ~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~-~--~R~~~s~~~~~dg~-iyv~GG  305 (656)
T 1k3i_A          247 GISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ-V--ARGYQSSATMSDGR-VFTIGG  305 (656)
T ss_dssp             EEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCS-S--CCSSCEEEECTTSC-EEEECC
T ss_pred             cccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCC-c--cccccceEEecCCe-EEEEeC
Confidence            466666 88999987642  4999999988766543211 1  11223456667888 887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.42  E-value=5.5  Score=33.14  Aligned_cols=139  Identities=13%  Similarity=0.101  Sum_probs=75.0

Q ss_pred             eEEEeCCCCcEEEEECC---------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           51 GIRFDKKTGDLYIADAY---------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~---------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      +++..  +++||+....         ..+.++|+.+.+.+.+...    +......-++.-+++ ||+..-...      
T Consensus        93 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~~~~-iyv~GG~~~------  159 (315)
T 4asc_A           93 GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL----PYVVYGHTVLSHMDL-VYVIGGKGS------  159 (315)
T ss_dssp             EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC----SSCCBSCEEEEETTE-EEEECCBCT------
T ss_pred             eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC----CCcccceeEEEECCE-EEEEeCCCC------
Confidence            44443  5789988651         2389999999877655332    111223333445666 887752200      


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC-----CceEEEEEccCCCCCcceeee
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS-----NCRILRFWLHGPNSGKQDVFA  193 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~~~~~~~~~~~  193 (310)
                           .......+++||+.+.+.+.+.. .+.|   ...+.. +++ ||+..-.     .+.+++||+...   ....+.
T Consensus       160 -----~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~  228 (315)
T 4asc_A          160 -----DRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVH-DGR-IIVAAGVTDTGLTSSAEVYSITDN---KWAPFE  228 (315)
T ss_dssp             -----TSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE-TTE-EEEEEEECSSSEEEEEEEEETTTT---EEEEEC
T ss_pred             -----CCcccceEEEEeCCCCeEEECCC-CCCchhceEEEEE-CCE-EEEEeccCCCCccceEEEEECCCC---eEEECC
Confidence                 01124569999999988887543 2222   233333 454 7775322     247899998643   233333


Q ss_pred             eCC--CCCCeeEECCCCCEEEEE
Q 046018          194 ELP--GFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       194 ~~~--~~p~~i~~d~~G~l~va~  214 (310)
                      ..|  ..-..++. -++.||+..
T Consensus       229 ~~p~~r~~~~~~~-~~~~l~v~G  250 (315)
T 4asc_A          229 AFPQERSSLSLVS-LVGTLYAIG  250 (315)
T ss_dssp             CCSSCCBSCEEEE-ETTEEEEEE
T ss_pred             CCCCcccceeEEE-ECCEEEEEC
Confidence            322  11123333 256787754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.96  E-value=6.6  Score=33.25  Aligned_cols=119  Identities=12%  Similarity=0.104  Sum_probs=61.6

Q ss_pred             CCcEEEEECC-----------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh--hhhhhh-
Q 046018           58 TGDLYIADAY-----------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ--RRQFMS-  123 (310)
Q Consensus        58 ~g~l~v~~~~-----------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~--~~~~~~-  123 (310)
                      +++|||....           ..++++|+.+.+.+.+....   +......-++..+++ ||+..-...-.  ...... 
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~---p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~  140 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA---PMGMAGHVTFVHNGK-AYVTGGVNQNIFNGYFEDLN  140 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC---SSCCSSEEEEEETTE-EEEEECCCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC---CcccccceEEEECCE-EEEEeCcCCCcCcccccchh
Confidence            5789886443           23889999998876553321   122222323336676 88876321100  000000 


Q ss_pred             --------------hhhc-----CCCCceEEEEeCCCCeEEEEecCCcc--c-ceEEEecCCCeEEEEec------CCce
Q 046018          124 --------------SILS-----GDKTGRLLKYEKTTKEVTILLQGLAF--A-NGVALSRDRTFILIAET------SNCR  175 (310)
Q Consensus       124 --------------~~~~-----~~~~g~v~~~d~~~~~~~~~~~~~~~--~-~gi~~~~d~~~lyv~~~------~~~~  175 (310)
                                    ..+.     ......+++||+++.+++.+......  . ..++.. ++ .||+..-      ....
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~  218 (357)
T 2uvk_A          141 EAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GD-KTWLINGEAKPGLRTDA  218 (357)
T ss_dssp             HHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TT-EEEEECCEEETTEECCC
T ss_pred             hcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CC-EEEEEeeecCCCcccCc
Confidence                          0000     01135799999999988876532211  1 233333 44 4777532      1457


Q ss_pred             EEEEEcc
Q 046018          176 ILRFWLH  182 (310)
Q Consensus       176 i~~~~~~  182 (310)
                      +++|+++
T Consensus       219 v~~~d~d  225 (357)
T 2uvk_A          219 VFELDFT  225 (357)
T ss_dssp             EEEEECC
T ss_pred             eEEEEec
Confidence            8888864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=90.95  E-value=3.8  Score=35.82  Aligned_cols=133  Identities=13%  Similarity=0.065  Sum_probs=76.9

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      +..|++ . +..|+++ ...+|..+|..+.......... ..   ..+++...+. + +.+.+                 
T Consensus        90 V~~l~f-d-~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~-~~---~v~~i~~~~p-~-~av~~-----------------  143 (388)
T 1xip_A           90 VIFVCF-H-GDQVLVS-TRNALYSLDLEELSEFRTVTSF-EK---PVFQLKNVNN-T-LVILN-----------------  143 (388)
T ss_dssp             EEEEEE-E-TTEEEEE-ESSEEEEEESSSTTCEEEEEEC-SS---CEEEEEECSS-E-EEEEE-----------------
T ss_pred             eeEEEE-C-CCEEEEE-cCCcEEEEEchhhhccCcccee-ec---ceeeEEecCC-C-EEEEE-----------------
Confidence            888999 3 6778888 4456888887654321111111 11   1234443333 2 44443                 


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---------CCCCC
Q 046018          129 DKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---------LPGFP  199 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~p  199 (310)
                       .+|.|+.||.+++..+.+.   .....++|+|+|  ++++ ..++.+.+|++++........+..         ....+
T Consensus       144 -~dG~L~v~dl~~~~~~~~~---~~Vs~v~WSpkG--~~vg-~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V  216 (388)
T 1xip_A          144 -SVNDLSALDLRTKSTKQLA---QNVTSFDVTNSQ--LAVL-LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSP  216 (388)
T ss_dssp             -TTSEEEEEETTTCCEEEEE---ESEEEEEECSSE--EEEE-ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEE
T ss_pred             -CCCCEEEEEccCCcccccc---CCceEEEEcCCc--eEEE-EcCCcEEEEcCCCccccccceecCCcccccccCCCeeE
Confidence             2788999999877665432   356789999998  4444 566889999887643110111210         01234


Q ss_pred             CeeEECCCCCEEEEE
Q 046018          200 DNVRSNSNGEFWVAL  214 (310)
Q Consensus       200 ~~i~~d~~G~l~va~  214 (310)
                      ..+.+-+++.+.++-
T Consensus       217 ~sI~wl~~~~flv~y  231 (388)
T 1xip_A          217 LSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEESSSSEEEEEE
T ss_pred             EEEEEecCCeEEEEE
Confidence            567777777665543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.87  E-value=11  Score=35.63  Aligned_cols=145  Identities=7%  Similarity=-0.009  Sum_probs=79.2

Q ss_pred             eEEEeCCCCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           51 GIRFDKKTGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .++.-..+++||+....       ..++++|+.+.+.+.+...+   ....-...++-.+++ ||+..-..         
T Consensus       444 s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p---~~R~~h~~~~~~~~~-iyv~GG~~---------  510 (695)
T 2zwa_A          444 TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS---HTRFRHSACSLPDGN-VLILGGVT---------  510 (695)
T ss_dssp             EEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS---BCCBSCEEEECTTSC-EEEECCBC---------
T ss_pred             EEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC---CCcccceEEEEcCCE-EEEECCCC---------
Confidence            44443114689888642       23889999998776553221   111223344435888 88875211         


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecC--Cccc---ce-EEEecCCCeEEEEecC-------CceEEEEEccCCCC---C
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQG--LAFA---NG-VALSRDRTFILIAETS-------NCRILRFWLHGPNS---G  187 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~~---~g-i~~~~d~~~lyv~~~~-------~~~i~~~~~~~~~~---~  187 (310)
                            ..+.+++||+.+.+++.+...  .+.|   .. +++..+.+.||+..-.       .+.+++||+....-   -
T Consensus       511 ------~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~  584 (695)
T 2zwa_A          511 ------EGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPI  584 (695)
T ss_dssp             ------SSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCE
T ss_pred             ------CCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccce
Confidence                  112799999999998876542  1111   23 5556553458886422       35799999875421   0


Q ss_pred             cceeeeeC---CCCCCeeEECCCCCEEEEE
Q 046018          188 KQDVFAEL---PGFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       188 ~~~~~~~~---~~~p~~i~~d~~G~l~va~  214 (310)
                      ....+...   +..-..+++-.+|.||+..
T Consensus       585 ~W~~~~~~p~~~R~~~~~~~~~~~~iyv~G  614 (695)
T 2zwa_A          585 TVIKKLQHPLFQRYGSQIKYITPRKLLIVG  614 (695)
T ss_dssp             EEEEEEECGGGCCBSCEEEEEETTEEEEEC
T ss_pred             EEEEcCCCCCCCcccceEEEeCCCEEEEEC
Confidence            02222221   2222344444447888863

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.50  E-value=6.4  Score=32.35  Aligned_cols=134  Identities=10%  Similarity=0.076  Sum_probs=72.1

Q ss_pred             CCcEEEEECC------CceEEEeCCCCe---EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           58 TGDLYIADAY------LGFQVVGPEGGL---ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        58 ~g~l~v~~~~------~gi~~~d~~~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      ++.||+....      ..++++|+.+.+   .+.+...+    .......++.-+++ ||+..-...            .
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p----~~r~~~~~~~~~~~-lyv~GG~~~------------~  124 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN----VRRGLAGATTLGDM-IYVSGGFDG------------S  124 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS----SCCBSCEEEEETTE-EEEECCBCS------------S
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC----CCccceeEEEECCE-EEEEcccCC------------C
Confidence            5788887542      238999998887   66553321    11222233333666 888752210            1


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCcc--cceEEEecCCCeEEEEec-----CCceEEEEEccCCCCCcceeeeeCC--CCC
Q 046018          129 DKTGRLLKYEKTTKEVTILLQGLAF--ANGVALSRDRTFILIAET-----SNCRILRFWLHGPNSGKQDVFAELP--GFP  199 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~~d~~~lyv~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~--~~p  199 (310)
                      .....+++||+.+.+.+.+......  ....+.. +++ ||+..-     ....+++||+...   ....+...|  ..-
T Consensus       125 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~  199 (301)
T 2vpj_A          125 RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGV-IYCLGGYDGLNILNSVEKYDPHTG---HWTNVTPMATKRSG  199 (301)
T ss_dssp             CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTE-EEEECCBCSSCBCCCEEEEETTTT---EEEEECCCSSCCBS
T ss_pred             cccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCE-EEEECCCCCCcccceEEEEeCCCC---cEEeCCCCCccccc
Confidence            1245699999999988876532211  1233333 554 777632     2367999998643   233333322  111


Q ss_pred             CeeEECCCCCEEEEE
Q 046018          200 DNVRSNSNGEFWVAL  214 (310)
Q Consensus       200 ~~i~~d~~G~l~va~  214 (310)
                      ..++. -++.||+..
T Consensus       200 ~~~~~-~~~~i~v~G  213 (301)
T 2vpj_A          200 AGVAL-LNDHIYVVG  213 (301)
T ss_dssp             CEEEE-ETTEEEEEC
T ss_pred             ceEEE-ECCEEEEEe
Confidence            22333 256787764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.72  E-value=9.4  Score=31.72  Aligned_cols=136  Identities=13%  Similarity=0.078  Sum_probs=71.8

Q ss_pred             CCcEEEEECC----C--------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           58 TGDLYIADAY----L--------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        58 ~g~l~v~~~~----~--------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ++.||+....    .        .++++|+.+.+.+.+...+..   ..-..+++ -+++ ||+..-....         
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~-~~~~-iyv~GG~~~~---------  121 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA---RCLFGLGE-VDDK-IYVVAGKDLQ---------  121 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC---BCSCEEEE-ETTE-EEEEEEEBTT---------
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc---ccccceEE-ECCE-EEEEcCccCC---------
Confidence            6788887651    0        177889998877655322111   12223333 3566 8876521000         


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC------CceEEEEEccCCCCCcceeeeeCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS------NCRILRFWLHGPNSGKQDVFAELP  196 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~  196 (310)
                       .......+++||+.+.+.+.+.. .+.+   ...+. .+++ ||+..-.      .+.+++||+...   ........+
T Consensus       122 -~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~p  194 (318)
T 2woz_A          122 -TEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKKG---DWKDLAPMK  194 (318)
T ss_dssp             -TCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTE-EEEECCEESSSCBCCCEEEEETTTT---EEEEECCCS
T ss_pred             -CCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCCC---EEEECCCCC
Confidence             01123468999999998887643 2222   23333 3554 7775321      356999998743   233333322


Q ss_pred             --CCCCeeEECCCCCEEEEEe
Q 046018          197 --GFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       197 --~~p~~i~~d~~G~l~va~~  215 (310)
                        ..-..+++ -++.||+...
T Consensus       195 ~~r~~~~~~~-~~~~iyv~GG  214 (318)
T 2woz_A          195 TPRSMFGVAI-HKGKIVIAGG  214 (318)
T ss_dssp             SCCBSCEEEE-ETTEEEEEEE
T ss_pred             CCcccceEEE-ECCEEEEEcC
Confidence              22223333 3578888643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=81.59  E-value=36  Score=32.09  Aligned_cols=120  Identities=11%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             ceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEEeecCCc-cccCCcceEEeCC-CCEEEEEeCCCchhhhhhhhh
Q 046018           50 LGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLVTEAAGQ-PLRFTNDLDIDEH-KGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      +.++.-. +++|||.....   .+.++|+.+...+.+......+ +......++++.+ ++ ||+......-        
T Consensus       493 h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~-iyv~GG~~~~--------  562 (695)
T 2zwa_A          493 HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ-GIILGGGFMD--------  562 (695)
T ss_dssp             CEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE-EEEECCBCTT--------
T ss_pred             ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE-EEEECCcCCC--------
Confidence            3444434 67899986542   4899999998876553210011 1112222555665 66 8887522100        


Q ss_pred             hhcCCCCceEEEEeCCCCe------EEEEecCCcc---cceEEEecCCCeEEEEec--------CCceEEEEEcc
Q 046018          125 ILSGDKTGRLLKYEKTTKE------VTILLQGLAF---ANGVALSRDRTFILIAET--------SNCRILRFWLH  182 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~------~~~~~~~~~~---~~gi~~~~d~~~lyv~~~--------~~~~i~~~~~~  182 (310)
                        .......+++||+++.+      ++.+......   ...++...+++ ||+..-        ....|++||+.
T Consensus       563 --~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          563 --QTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             --SSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE-EEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             --CCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE-EEEECCccCCCCCCCCCeEEEEECC
Confidence              00124569999998887      5655431111   22344443344 666432        12446666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	3e-34
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	1e-19
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.003

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  125 bits (314), Expect = 3e-34
 Identities = 50/314 (15%), Positives = 94/314 (29%), Gaps = 44/314 (14%)

Query: 4   TGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRF--------- 54
           +G+    I+ +  D+ G     +  ++++    P   ++E I        F         
Sbjct: 52  SGLKYPGIMSFDPDKSG-KILLMDLNEKE----PAVSELEIIGNTLDISSFNPHGISTFI 106

Query: 55  -DKKTGDLYIADAYLGFQVVG----PEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYF 109
            D  T  L + +       V      E   +   +     + L   ND+     +     
Sbjct: 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYAT 166

Query: 110 TDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIA 169
            D        +     L    +        +  +V ++ +G  FANG+ +S D  ++ IA
Sbjct: 167 NDHYFIDPYLKSWEMHLGLAWSFV---TYYSPNDVRVVAEGFDFANGINISPDGKYVYIA 223

Query: 170 ETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVR-SNSNGEFWVALHAKKGLFGKLILLN 228
           E    +I  +  H   +             DN+      G+ WV  H             
Sbjct: 224 ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRI------- 276

Query: 229 SWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK 288
                        F        G +       LSE+ +V  V  +  G  L   +     
Sbjct: 277 -------------FFYDAENPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVY 322

Query: 289 DGQLWMGSVLMPFI 302
            G+L +G+V    +
Sbjct: 323 KGKLLIGTVFHKAL 336

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 85.1 bits (209), Expect = 1e-19
 Identities = 49/288 (17%), Positives = 101/288 (35%), Gaps = 30/288 (10%)

Query: 1   GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD 60
               G   G IL+        T                 P++    G P G + D+    
Sbjct: 38  VEVNGKPAGEILRIDLKTGKKTVICK-------------PEVNGYGGIPAGCQCDRDANQ 84

Query: 61  LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120
           L++AD  LG  VV  +G        ++ G+ ++  ND   D ++G ++ T  +       
Sbjct: 85  LFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPAD 143

Query: 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD----RTFILIAETSNCRI 176
           +  S+   +K G +  +    + + +      F NG+A+          +++AET   ++
Sbjct: 144 YTRSMQ--EKFGSIYCFTTDGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 200

Query: 177 LRFWLHGPNSGKQD-VFAELP----GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWL 231
             + + GP   +   V+  +P    G  D +  + +    VA          + +     
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS----SHIEVFGPDG 256

Query: 232 GKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTL 279
           G+  +++   F +  +L    +     +   E   V +      GK  
Sbjct: 257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQ 304

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 26/211 (12%), Positives = 43/211 (20%), Gaps = 29/211 (13%)

Query: 3   YTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLY 62
            T    G I+    D       A                     G+  G+ F     DL 
Sbjct: 43  VTNHEVGEIVSITPDG-NQQIHATVE------------------GKVSGLAFTSNG-DLV 82

Query: 63  IADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122
                     V         + T        F N +            DS         +
Sbjct: 83  ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDV 141

Query: 123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182
                                +        F     L R   F+ ++ T    +LR  + 
Sbjct: 142 --------VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVD 193

Query: 183 GPNSGKQDVFAELPGFPDNVRSNSNGEFWVA 213
             +   +          D+   +  G  + A
Sbjct: 194 STDKPGEPEIFVEQTNIDDFAFDVEGNLYGA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.95
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.92
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.8
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.74
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.73
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.72
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.69
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.66
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.65
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.62
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.62
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.57
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.54
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.5
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.42
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.26
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.14
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.13
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.09
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.03
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.01
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.86
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.79
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.76
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.76
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.71
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.7
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.6
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.53
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.51
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.51
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.49
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.49
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.41
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.41
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.4
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.37
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.36
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.34
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.32
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.32
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.31
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.3
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.23
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.2
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.18
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.16
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.15
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.15
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.08
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.06
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.84
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.79
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.6
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.48
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.48
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.46
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.4
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.26
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.2
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.15
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.1
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.0
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.98
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.74
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.62
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.47
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.17
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.02
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.72
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.09
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.76
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.52
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	94.44
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	93.74
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.34
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.07
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	92.82
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	92.65
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	92.27
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.71
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.01
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.05
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	87.93
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	87.06

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.95  E-value=2.1e-26  Score=196.40  Aligned_cols=229  Identities=14%  Similarity=0.148  Sum_probs=181.0

Q ss_pred             EEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec
Q 046018           10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA   87 (310)
Q Consensus        10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~   87 (310)
                      +-+.|+.+.+.  |+|+....|+++++++.+. ........+.+++.++ +|+||++.. +||+++|+++++++.+....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~-dg~l~va~~-~gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKIS-DSKQLIASD-DGLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEE-TTEEEEEET-TEEEEEETTTCCEEEEECSS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEec-CCCEEEEEe-CccEEeecccceeeEEeeee
Confidence            56889987777  9999999999999887442 2233446778899988 899999975 58999999999988776654


Q ss_pred             CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEE
Q 046018           88 AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFIL  167 (310)
Q Consensus        88 ~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~ly  167 (310)
                      .+.+...+|++++|++|+ +|++++....           ....+.++++.  .++...+......|||+++++|++.+|
T Consensus        98 ~~~~~~~~nd~~vd~~G~-iw~~~~~~~~-----------~~~~g~l~~~~--~g~~~~~~~~~~~~Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGA-LWIGTMGRKA-----------ETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGY  163 (295)
T ss_dssp             TTCTTEEEEEEEECTTSC-EEEEEEETTC-----------CTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred             cCCCcccceeeEECCCCC-EEEEeccccc-----------cccceeEeeec--CCcEEEEeeccCCcceeeecCCCceEE
Confidence            555667899999999999 9999854211           12355677775  367777777788899999999999999


Q ss_pred             EEecCCceEEEEEccCC---CCCcceeeee---CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          168 IAETSNCRILRFWLHGP---NSGKQDVFAE---LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       168 v~~~~~~~i~~~~~~~~---~~~~~~~~~~---~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      ++++.+++|++|+.+..   .......+..   ..+.|+++++|++|+||+|.+.+++     |.+++++|+.+..+++|
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-----V~~~dp~G~~~~~i~lP  238 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-----VDRYDTDGNHIARYEVP  238 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-----EEEECTTCCEEEEEECS
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-----eEEecCCCcEeeEecCC
Confidence            99999999999998742   1223344443   3467999999999999999998876     78888999999999999


Q ss_pred             hhhhcccccCCCCc-eEEEE
Q 046018          242 FRQLHSLLVGGKPH-ATAIK  260 (310)
Q Consensus       242 ~~~~~~~~~~~~~~-~~~~~  260 (310)
                      .+.+++|+||+.+. .+++.
T Consensus       239 ~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEEE
T ss_pred             CCceEEEEEeCCCCCEEEEE
Confidence            88899999988664 55554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.93  E-value=1.6e-24  Score=186.30  Aligned_cols=254  Identities=16%  Similarity=0.235  Sum_probs=168.0

Q ss_pred             CcEEEEEeCCCCCeEE--------EEEeccccccccCCCCCccc-----cccceeceEEEeCCCCcEEEEECCCceEEEe
Q 046018            8 DGRILKWQGDELGWTE--------FAVTTSQRKECVRPFAPDIE-----HICGRPLGIRFDKKTGDLYIADAYLGFQVVG   74 (310)
Q Consensus         8 ~~~i~~~~~~~~~W~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d   74 (310)
                      ...-..|+++..-|+.        .....+.++++.+.+.....     ...+.|.||+++++.+.||+++..++|.+++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3455566664433542        12234777777664322221     1224699999999444689998888899999


Q ss_pred             CCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc
Q 046018           75 PEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA  154 (310)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~  154 (310)
                      ++++..+.+.....+.+...||+++++++|+ |||+++........  .........|+|++++++ ++...+...+..|
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~--~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~p  174 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPAD--YTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP  174 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSC--CCBTTSSSCEEEEEECTT-SCEEEEEEEESSE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCccccc--ccceeccCCceEEEEeec-CceeEeeCCccee
Confidence            9987654333333455667899999999999 99998653221111  111123357899999997 5566666778889


Q ss_pred             ceEEEecCCC----eEEEEecCCceEEEEEccC-CCCCcceeeeeCC----CCCCeeEECCCCCEEEEEecCCccceeee
Q 046018          155 NGVALSRDRT----FILIAETSNCRILRFWLHG-PNSGKQDVFAELP----GFPDNVRSNSNGEFWVALHAKKGLFGKLI  225 (310)
Q Consensus       155 ~gi~~~~d~~----~lyv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~----~~p~~i~~d~~G~l~va~~~~~~~~~~~i  225 (310)
                      |||+++++++    .||++++.+++|++|+.++ +.....+.+...+    +.|++|++|++|+|||+++..+.     |
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~-----I  249 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-----I  249 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-----E
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE-----E
Confidence            9999999865    6999999999999998763 2333334444432    46899999999999999998776     5


Q ss_pred             eecccc-ccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEE
Q 046018          226 LLNSWL-GKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEV  270 (310)
Q Consensus       226 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~  270 (310)
                      .+++++ ++.+..+..|...+++++|+.....+++.-..+|.+.+.
T Consensus       250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            566554 444555556555666666665444555554444444443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.92  E-value=1.3e-23  Score=181.03  Aligned_cols=214  Identities=18%  Similarity=0.217  Sum_probs=161.5

Q ss_pred             EEEEEeCCCCC-eEEEEEeccccccccCCCCCc-cccccceeceEEEeCCCCcEEEEECC-----CceEEEeCCCCeEEE
Q 046018           10 RILKWQGDELG-WTEFAVTTSQRKECVRPFAPD-IEHICGRPLGIRFDKKTGDLYIADAY-----LGFQVVGPEGGLATQ   82 (310)
Q Consensus        10 ~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~gl~~d~~~g~l~v~~~~-----~gi~~~d~~~~~~~~   82 (310)
                      .-+.|+.+..- |++.....|+++++.+..... .......|+||++++ +|+|||+...     .++..++..+..+..
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeee
Confidence            34577765434 678788889999987744222 233456899999999 9999999864     248888998877655


Q ss_pred             EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC
Q 046018           83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD  162 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d  162 (310)
                      +...  ......||+++++++|+ +|+++.....           ....+.+++++++++..+.+...+..||||++++|
T Consensus       122 ~~~~--~~~~~~~nd~~~d~~G~-l~vtd~~~~~-----------~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~d  187 (319)
T d2dg1a1         122 IIED--LSTAYCIDDMVFDSKGG-FYFTDFRGYS-----------TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTD  187 (319)
T ss_dssp             EECS--SSSCCCEEEEEECTTSC-EEEEECCCBT-----------TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTT
T ss_pred             eccC--CCcccCCcceeEEeccc-eeeccccccc-----------ccCcceeEEEecccceeEEEeeccceeeeeeeccc
Confidence            5432  22345799999999999 9999865321           12367899999987777777777889999999999


Q ss_pred             CCeEEEEecCCceEEEEEccCCC-CCcc---eeeeeC--CCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEe
Q 046018          163 RTFILIAETSNCRILRFWLHGPN-SGKQ---DVFAEL--PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLL  236 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~-~~~~---~~~~~~--~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~  236 (310)
                      ++.||++++.+++|++|+.+... ....   ......  ...|++|++|++|+|||+.+.++.     |.+++++|+.+.
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-----V~~~~p~G~~l~  262 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-----VLVFNKRGYPIG  262 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-----EEEECTTSCEEE
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-----EEEECCCCcEEE
Confidence            99999999999999999987431 1111   111112  246999999999999999998876     788889999999


Q ss_pred             eccchhh
Q 046018          237 KLPLSFR  243 (310)
Q Consensus       237 ~~~~~~~  243 (310)
                      .+.+|..
T Consensus       263 ~i~~P~~  269 (319)
T d2dg1a1         263 QILIPGR  269 (319)
T ss_dssp             EEECTTG
T ss_pred             EEeCCCc
Confidence            9888754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.90  E-value=5.3e-21  Score=165.17  Aligned_cols=231  Identities=18%  Similarity=0.209  Sum_probs=164.3

Q ss_pred             ceeceEEEeCC-CC--cEEEEECC-C----ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           47 GRPLGIRFDKK-TG--DLYIADAY-L----GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        47 ~~p~gl~~d~~-~g--~l~v~~~~-~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      -+|+||.+-.+ +|  .|||..+. .    .|+.++.++.+++. ......+....||+|++..+|. +|+|+.+.....
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~-~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~  174 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLH-LKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDP  174 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEE-EEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSH
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEE-EeecCCccccCccceEEecCCC-EEEecCccCcCh
Confidence            37999886321 44  58888874 2    26777877776653 3444556677899999999998 999986644333


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                      .....+.+.+...+.|+.||+.  ..+.+..++..||||+++||++.|||+++..++|++|+.++...........+++.
T Consensus       175 ~~~~~e~~~~~~~g~v~~~~~~--~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~  252 (340)
T d1v04a_         175 YLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL  252 (340)
T ss_dssp             HHHHHHHHTTCCCEEEEEECSS--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE
T ss_pred             hhhhhhHhhcCCceeEEEEcCC--ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCC
Confidence            4445555667778889999874  56677788899999999999999999999999999999876433333334457889


Q ss_pred             CCeeEECC-CCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEE---C-CCCCEEEEEEc
Q 046018          199 PDNVRSNS-NGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKL---S-EKGEVLEVLED  273 (310)
Q Consensus       199 p~~i~~d~-~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d-~~g~~~~~~~~  273 (310)
                      |||+.+|+ +|.+|++.+.....    +....+.                    ......+.++   + .++++.+.+..
T Consensus       253 pDNi~~d~~~g~lwva~~p~~~~----~~~~~~~--------------------~~~~s~v~ri~~~~~~~~~v~~~~~~  308 (340)
T d1v04a_         253 VDNISVDPVTGDLWVGCHPNGMR----IFFYDAE--------------------NPPGSEVLRIQDILSEEPKVTVVYAE  308 (340)
T ss_dssp             EEEEEECTTTCCEEEEEESCHHH----HHSCCTT--------------------SCCCEEEEEEECTTSSSCEEEEEEEE
T ss_pred             CCccEEecCCCEEEEEECCcccc----hhhhccc--------------------CCCCceeEEEEeccCCCCeEEEEEeC
Confidence            99999995 78999998865421    1111100                    0011123333   2 34667677765


Q ss_pred             CCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018          274 CEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       274 ~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~  307 (310)
                       +|..+...|.++..+|+||+|+++.+.| +|++
T Consensus       309 -~G~~~~~~T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         309 -NGTVLQGSTVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             -CSSSSCSEEEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             -CCcEeeceEEEEEECCEEEEEeeeCCce-EecC
Confidence             5777788888899999999999988877 6874

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=4.6e-18  Score=141.61  Aligned_cols=228  Identities=16%  Similarity=0.220  Sum_probs=147.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-c-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-G-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      -.|++|++|+ +|++|+++... + +.+++..+.....+ .   ......|.+|+++++|+ +|+++..           
T Consensus        14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~-~---~~~~~~p~gvav~~~g~-i~v~d~~-----------   76 (260)
T d1rwia_          14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVL-P---FNGLYQPQGLAVDGAGT-VYVTDFN-----------   76 (260)
T ss_dssp             CCEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEEC-C---CCSCCSCCCEEECTTCC-EEEEETT-----------
T ss_pred             CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEe-c---cCCccCceEEEEcCCCC-EEEeeee-----------
Confidence            5799999999 99999998753 3 78887765543222 1   12345799999999999 9999843           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCCCCCeeE
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPGFPDNVR  203 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~  203 (310)
                            .+.+..++..++...........|++|+++++++ +|+++..+.++.+++..+...   .... .....|.+++
T Consensus        77 ------~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          77 ------NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ---TVLPFTGLNDPDGVA  146 (260)
T ss_dssp             ------TEEEEECTTCSCCEECCCCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSC---EECCCCSCCSCCEEE
T ss_pred             ------eceeeeeeeccceeeeeeeeeeecccccccccce-eEeecccccccccccccccee---eeeeecccCCcceee
Confidence                  3334444333333322234467799999999987 999999999999998765321   1111 1224689999


Q ss_pred             ECCCCCEEEEEecCCccceeeeeeccccccEEeecc-chhhhhcccccCCCC--------ceEEEEECCCCCEEEEEEcC
Q 046018          204 SNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLP-LSFRQLHSLLVGGKP--------HATAIKLSEKGEVLEVLEDC  274 (310)
Q Consensus       204 ~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~d~~g~~~~~~~~~  274 (310)
                      ++++|++|+++.....     +..+..++.....+. .....|..+++...+        ...+.++++++.......  
T Consensus       147 ~~~~g~~~v~~~~~~~-----i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~--  219 (260)
T d1rwia_         147 VDNSGNVYVTDTDNNR-----VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP--  219 (260)
T ss_dssp             ECTTCCEEEEEGGGTE-----EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECC--
T ss_pred             ecCCCCEeeecccccc-----ccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEc--
Confidence            9999999999987765     566666655443333 223344444444332        223444554444333221  


Q ss_pred             CCCeecceeEEEEe-CCEEEEecCCCCeEEEecccc
Q 046018          275 EGKTLSFISEVEEK-DGQLWMGSVLMPFIGIYNRFR  309 (310)
Q Consensus       275 ~g~~~~~~~~~~~~-~g~l~vgs~~~~~i~~~~~~~  309 (310)
                       ...+..++.++.. +|.||++...+++|.+|+.+.
T Consensus       220 -~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         220 -FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             -CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             -cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence             1123456777655 689999999999999998864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.9e-15  Score=126.72  Aligned_cols=232  Identities=19%  Similarity=0.244  Sum_probs=157.6

Q ss_pred             cceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeec-CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEA-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      +..|.||++++ +|+|||++.. +.|.++|+++..++.+.... .......|.+++++++....+++...          
T Consensus        22 f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----------   90 (279)
T d1q7fa_          22 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----------   90 (279)
T ss_dssp             BSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----------
T ss_pred             ECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC----------
Confidence            46799999999 8999999976 46999999976655553321 12234468889977665435555432          


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPD  200 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~  200 (310)
                            ..+.|.++++.+.....+. .....|.+++++++++ +|+++....++.++++++..   ...+..  ....|.
T Consensus        91 ------~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~---~~~~g~~~~~~~~~  160 (279)
T d1q7fa_          91 ------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV---LHKFGCSKHLEFPN  160 (279)
T ss_dssp             ------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE---EEEEECTTTCSSEE
T ss_pred             ------CccccccccccccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce---eecccccccccccc
Confidence                  2557888888754444443 3456789999999987 89999999999999887532   122222  124678


Q ss_pred             eeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch--hhhhcccccCCCC---------ceEEEEECCCCCEEE
Q 046018          201 NVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS--FRQLHSLLVGGKP---------HATAIKLSEKGEVLE  269 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~d~~g~~~~  269 (310)
                      ++++|++|++|+++...+.     +..++++|+.+..+..+  ...|..+++...+         ...+..++++|+.+.
T Consensus       161 ~i~~d~~g~i~v~d~~~~~-----V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~  235 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHC-----VKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLIS  235 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTE-----EEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEE
T ss_pred             eeeeccceeEEeeeccccc-----eeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEE
Confidence            9999999999999988775     67788889887776432  2234444443222         224556677888776


Q ss_pred             EEEcCCCCeecceeEEE-EeCCEEEEecCCCCeEEEec
Q 046018          270 VLEDCEGKTLSFISEVE-EKDGQLWMGSVLMPFIGIYN  306 (310)
Q Consensus       270 ~~~~~~g~~~~~~~~~~-~~~g~l~vgs~~~~~i~~~~  306 (310)
                      .+....  ....++.++ ..+|.||+++. +++|.+|+
T Consensus       236 ~~~~~~--~~~~p~~vav~~dG~l~V~~~-n~~v~~fr  270 (279)
T d1q7fa_         236 ALESKV--KHAQCFDVALMDDGSVVLASK-DYRLYIYR  270 (279)
T ss_dssp             EEEESS--CCSCEEEEEEETTTEEEEEET-TTEEEEEE
T ss_pred             EEeCCC--CCCCEeEEEEeCCCcEEEEeC-CCeEEEEE
Confidence            664321  123456654 45789999985 78888775

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.73  E-value=4.2e-16  Score=133.09  Aligned_cols=238  Identities=13%  Similarity=0.066  Sum_probs=152.9

Q ss_pred             CCCccccccceeceEEEeCCCCcEEEEECCC--------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEE
Q 046018           38 FAPDIEHICGRPLGIRFDKKTGDLYIADAYL--------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYF  109 (310)
Q Consensus        38 ~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~--------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v  109 (310)
                      .++.+..-...|.|+++++ +|+||+++...        .|+++|++++..+.+...........|++|+++++|+++|+
T Consensus         9 ~~~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~v   87 (314)
T d1pjxa_           9 LFTKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             CCEEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred             ceEEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEE
Confidence            3456666678899999999 99999997642        39999999987765543322223346899999999987888


Q ss_pred             EeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-----CCcccceEEEecCCCeEEEEecC------------
Q 046018          110 TDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-----GLAFANGVALSRDRTFILIAETS------------  172 (310)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~~~gi~~~~d~~~lyv~~~~------------  172 (310)
                      ++.                  ...+.+++++++..+.+..     .+..||.++++++|+ ||++++.            
T Consensus        88 ad~------------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          88 ADM------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             EET------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTT
T ss_pred             EEC------------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCccccccccee
Confidence            873                  3569999998665554322     134589999999997 9999753            


Q ss_pred             ---CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-----EEEEEecCCccceeeeeecc--ccccEE-----ee
Q 046018          173 ---NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-----FWVALHAKKGLFGKLILLNS--WLGKTL-----LK  237 (310)
Q Consensus       173 ---~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-----l~va~~~~~~~~~~~i~~~~--~~g~~~-----~~  237 (310)
                         .++|+++++++.    ...+......|++++++++++     ||+++...+.     |.+++  ..+...     ..
T Consensus       149 ~~~~G~v~~~~~dg~----~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~-----i~~~d~~~~g~~~~~~~~~~  219 (314)
T d1pjxa_         149 QEKFGSIYCFTTDGQ----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK-----LWSYDIKGPAKIENKKVWGH  219 (314)
T ss_dssp             SSSCEEEEEECTTSC----EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE-----EEEEEEEETTEEEEEEEEEE
T ss_pred             ccCCceEEEEeecCc----eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccc-----eEEeeccCccccceeeEEEE
Confidence               357999887653    222222123689999987764     9999887776     34432  333321     12


Q ss_pred             ccch-hhhhcccccCCCC--------ceEEEEECCCCC-EEEEEEcCCCCeecceeEEEEeC--CEEEEecCCCCeEEEe
Q 046018          238 LPLS-FRQLHSLLVGGKP--------HATAIKLSEKGE-VLEVLEDCEGKTLSFISEVEEKD--GQLWMGSVLMPFIGIY  305 (310)
Q Consensus       238 ~~~~-~~~~~~~~~~~~~--------~~~~~~~d~~g~-~~~~~~~~~g~~~~~~~~~~~~~--g~l~vgs~~~~~i~~~  305 (310)
                      ++.. ...|.++++....        ...+.+++|++. .+..+..+.    ..++.++..+  .+|||.+..+.+|+++
T Consensus       220 ~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~----~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         220 IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC----CCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            2111 1123344443322        234556666633 333343322    2345565543  3799999989999998


Q ss_pred             ccc
Q 046018          306 NRF  308 (310)
Q Consensus       306 ~~~  308 (310)
                      +.=
T Consensus       296 ~~~  298 (314)
T d1pjxa_         296 EWQ  298 (314)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            853

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.72  E-value=7.2e-16  Score=130.89  Aligned_cols=195  Identities=18%  Similarity=0.190  Sum_probs=134.0

Q ss_pred             EeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEe--CCCCeEEEEEeecCCccccCCcceEEeC
Q 046018           26 VTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVG--PEGGLATQLVTEAAGQPLRFTNDLDIDE  102 (310)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d--~~~~~~~~~~~~~~~~~~~~~~~i~~d~  102 (310)
                      ...+.++++.++. +......+.|.++++++ +|+||++.... .+.+++  ...+....+....   ....++++++++
T Consensus        48 ~~~I~~i~p~g~~-~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~i~~~~  122 (302)
T d2p4oa1          48 VGEIVSITPDGNQ-QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLS  122 (302)
T ss_dssp             TTEEEEECTTCCE-EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESS
T ss_pred             CCEEEEEeCCCCE-EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeeccccC---CccccceeEEcc
Confidence            3456666766633 34445557899999999 89999998764 355554  3445554444432   334689999999


Q ss_pred             CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-----------CCcccceEEEecCCCeEEEEec
Q 046018          103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-----------GLAFANGVALSRDRTFILIAET  171 (310)
Q Consensus       103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----------~~~~~~gi~~~~d~~~lyv~~~  171 (310)
                      +|+ +|++++.                 .+.++++++.++.......           ....++|++++  ++.+|++++
T Consensus       123 ~g~-~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         123 DTQ-YLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             SSE-EEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             CCC-EEeeccc-----------------cccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence            998 9999865                 6789999998877665431           12345777665  457999999


Q ss_pred             CCceEEEEEccCCC-CCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEee--ccchhhhhccc
Q 046018          172 SNCRILRFWLHGPN-SGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK--LPLSFRQLHSL  248 (310)
Q Consensus       172 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~--~~~~~~~~~~~  248 (310)
                      .+++|++++.++.. ......+.. ...|++|++|++|+||++...+++     |.+++++|+....  ...+...++++
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~pdgia~d~dG~l~va~~~~~~-----V~~i~p~G~~~~~~~~~~~~~~pt~v  256 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNS-----VVRIAPDRSTTIIAQAEQGVIGSTAV  256 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCC-----EEEECTTCCEEEEECGGGTCTTEEEE
T ss_pred             CCCeEEeccccccccccccccccC-CCCCcceEECCCCCEEEEEcCCCc-----EEEECCCCCEEEEEecCCCCCCceEE
Confidence            99999999987532 222233322 346999999999999999988776     6667777775433  33344445555


Q ss_pred             ccC
Q 046018          249 LVG  251 (310)
Q Consensus       249 ~~~  251 (310)
                      +|+
T Consensus       257 afg  259 (302)
T d2p4oa1         257 AFG  259 (302)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.69  E-value=2.2e-15  Score=128.90  Aligned_cols=148  Identities=9%  Similarity=0.169  Sum_probs=109.0

Q ss_pred             eceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ..|+++|+ +|+||+++... .|++++++++........    ....|++|+++++|+ +|+++....            
T Consensus        42 lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~----~~~~p~gla~~~dG~-l~va~~~~~------------  103 (319)
T d2dg1a1          42 LEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGR-LFVCYLGDF------------  103 (319)
T ss_dssp             EEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSC-EEEEECTTS------------
T ss_pred             cEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeC----CCCCeeEEEECCCCC-EEEEecCCC------------
Confidence            46999998 89999999875 499999998865544322    123689999999999 999975421            


Q ss_pred             CCCCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEecC------CceEEEEEccCCCCCcceeeeeCCCC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAETS------NCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                       ...+.++.++..++........   ...||+++++++|+ +|+++..      .+.+++++++++.   ...+...-..
T Consensus       104 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~~~  178 (319)
T d2dg1a1         104 -KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISV  178 (319)
T ss_dssp             -SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEESS
T ss_pred             -ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---eEEEeeccce
Confidence             1356789999887766654432   44589999999998 9998764      3469998877542   2223222246


Q ss_pred             CCeeEECCCCC-EEEEEecCCc
Q 046018          199 PDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       199 p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      |++|+++++|+ ||+++...+.
T Consensus       179 pnGia~s~dg~~lyvad~~~~~  200 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANR  200 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTE
T ss_pred             eeeeeeccccceEEEecccCCc
Confidence            89999999996 9999887765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=1.7e-15  Score=125.72  Aligned_cols=147  Identities=19%  Similarity=0.282  Sum_probs=112.9

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ...|.+|++++ +|+||+++... .+.+++..+.......    ......|.+|+++++|+ +|+++..           
T Consensus        97 ~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~-~~v~~~~-----------  159 (260)
T d1rwia_          97 LNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDNSGN-VYVTDTD-----------  159 (260)
T ss_dssp             CCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECC----CCSCCSCCEEEECTTCC-EEEEEGG-----------
T ss_pred             eeecccccccc-cceeEeeccccccccccccccceeeeee----ecccCCcceeeecCCCC-Eeeeccc-----------
Confidence            36799999999 89999998763 4888888766543221    12345789999999999 9999843           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCee
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNV  202 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i  202 (310)
                            .++|+++++++.....+. ..+..|.||+++++|+ |||++..+++|.+|++++..   ...+.. ....|.+|
T Consensus       160 ------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i  229 (260)
T d1rwia_         160 ------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAV  229 (260)
T ss_dssp             ------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEE
T ss_pred             ------cccccccccccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEE
Confidence                  678999998865555443 4567899999999987 99999999999999877532   122222 12468999


Q ss_pred             EECCCCCEEEEEecCCc
Q 046018          203 RSNSNGEFWVALHAKKG  219 (310)
Q Consensus       203 ~~d~~G~l~va~~~~~~  219 (310)
                      ++|++|+|||++..++.
T Consensus       230 ~~d~~g~l~vad~~~~r  246 (260)
T d1rwia_         230 AVDSDRTVYVADRGNDR  246 (260)
T ss_dssp             EECTTCCEEEEEGGGTE
T ss_pred             EEeCCCCEEEEECCCCE
Confidence            99999999999988775

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.3e-14  Score=116.90  Aligned_cols=203  Identities=12%  Similarity=0.128  Sum_probs=134.4

Q ss_pred             cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ...+.+|.+|..++.||+++... .|.+.+.++.................|.+||+|.-++.||+++..           
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~-----------   97 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV-----------   97 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT-----------
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC-----------
Confidence            35678999998788999999875 488887764321111011011234578999999876669999854           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCC-ceEEEEEccCCCCCcceeee-eCCCCCCe
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSN-CRILRFWLHGPNSGKQDVFA-ELPGFPDN  201 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~~~~~~~~~~~~~~~~-~~~~~p~~  201 (310)
                            .++|.++++++..... +......|.+|+++|..+.|||++... .+|++.+++|..   ...+. ..-..|.+
T Consensus        98 ------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~---~~~l~~~~~~~p~g  168 (266)
T d1ijqa1          98 ------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNG  168 (266)
T ss_dssp             ------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEE
T ss_pred             ------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc---eecccccccceeeE
Confidence                  6689999988665544 445567899999999888899998654 489999998742   23332 22357899


Q ss_pred             eEECCCC-CEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCE-EEEEEcCCCCee
Q 046018          202 VRSNSNG-EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEV-LEVLEDCEGKTL  279 (310)
Q Consensus       202 i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~-~~~~~~~~g~~~  279 (310)
                      +++|+.+ +||+++...+.                                      +.+++.+|.- ........+  .
T Consensus       169 l~iD~~~~~lYw~d~~~~~--------------------------------------I~~~~~dG~~~~~~~~~~~~--~  208 (266)
T d1ijqa1         169 ITLDLLSGRLYWVDSKLHS--------------------------------------ISSIDVNGGNRKTILEDEKR--L  208 (266)
T ss_dssp             EEEETTTTEEEEEETTTTE--------------------------------------EEEEETTSCSCEEEEECTTT--T
T ss_pred             EEeeccccEEEEecCCcCE--------------------------------------EEEEECCCCCEEEEEeCCCc--c
Confidence            9999765 69998765542                                      2233444432 222222222  2


Q ss_pred             cceeEEEEeCCEEEEecCCCCeEEEeccc
Q 046018          280 SFISEVEEKDGQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       280 ~~~~~~~~~~g~l~vgs~~~~~i~~~~~~  308 (310)
                      ..+..++..++.||+....+..|.+++++
T Consensus       209 ~~p~~lav~~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         209 AHPFSLAVFEDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             SSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             cccEEEEEECCEEEEEECCCCeEEEEECC
Confidence            34666667788888888888888888764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.4e-13  Score=114.05  Aligned_cols=197  Identities=15%  Similarity=0.165  Sum_probs=140.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+.+|++|..+++||+++...+ |.+++.+++..+.+...    ....|.+|++|.-++.||+++..            
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----~~~~p~~iAvD~~~~~lY~~d~~------------   99 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----DLGSPEGIALDHLGRTIFWTDSQ------------   99 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----TCCCEEEEEEETTTTEEEEEETT------------
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe----ccccccEEEEeccCCeEEEeccC------------
Confidence            34668999987889999998854 99999987766555432    23468999999765569999854            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDNV  202 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  202 (310)
                           .+.|.++++++...+.+. ..+..|.+|+++|....|||++.+.  .+|++.++++...  .......-..|.++
T Consensus       100 -----~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~~~~~~~P~gl  172 (263)
T d1npea_         100 -----LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQDNLGLPNGL  172 (263)
T ss_dssp             -----TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEECTTCSCEEEE
T ss_pred             -----CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--eeeeeecccccceE
Confidence                 668999998866555544 4567899999999988999998654  4699999987422  12222222578999


Q ss_pred             EECCCC-CEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecc
Q 046018          203 RSNSNG-EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSF  281 (310)
Q Consensus       203 ~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~  281 (310)
                      ++|..+ +||+++...+.                                      +.+++.+|.-.+....  +.  ..
T Consensus       173 aiD~~~~~lYw~d~~~~~--------------------------------------I~~~~~~g~~~~~v~~--~~--~~  210 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTHR--------------------------------------AECLNPAQPGRRKVLE--GL--QY  210 (263)
T ss_dssp             EEETTTTEEEEEETTTTE--------------------------------------EEEEETTEEEEEEEEE--CC--CS
T ss_pred             EEeecCcEEEEEeCCCCE--------------------------------------EEEEECCCCCeEEEEC--CC--CC
Confidence            999665 69888765542                                      2344455543333322  21  23


Q ss_pred             eeEEEEeCCEEEEecCCCCeEEEeccc
Q 046018          282 ISEVEEKDGQLWMGSVLMPFIGIYNRF  308 (310)
Q Consensus       282 ~~~~~~~~g~l~vgs~~~~~i~~~~~~  308 (310)
                      +..++..+++||+....++.|.+++++
T Consensus       211 P~~lav~~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         211 PFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             cEEEEEECCEEEEEECCCCEEEEEECC
Confidence            566777789999999999999999875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.3e-14  Score=118.84  Aligned_cols=183  Identities=16%  Similarity=0.199  Sum_probs=133.6

Q ss_pred             EeCCCCC--eEEEEEeccccccccCCCCCcccc-ccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCC
Q 046018           14 WQGDELG--WTEFAVTTSQRKECVRPFAPDIEH-ICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAG   89 (310)
Q Consensus        14 ~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~   89 (310)
                      ++...+.  |.+.....+.+.+..+...+.+.. ....|.+|++|...++||+++... .|.++++++...+.+...   
T Consensus        43 ~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~---  119 (263)
T d1npea_          43 FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---  119 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecc---
Confidence            4544444  887777777777666544333332 336899999997688999999874 599999987765544332   


Q ss_pred             ccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEE
Q 046018           90 QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILI  168 (310)
Q Consensus        90 ~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv  168 (310)
                       ....|.+|++||...++|+++...               ....|++.++++...+. +..+...|+||++++.+++|||
T Consensus       120 -~l~~p~~l~vdp~~g~ly~t~~~~---------------~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         120 -GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             -SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             -cccCCcEEEEecccCcEEEeecCC---------------CCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEE
Confidence             245799999999877799998541               24569999987654444 4456788999999999889999


Q ss_pred             EecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          169 AETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ++...+.|.+++.++..   .+.+......|.+|+++ ++.||++++..+.
T Consensus       184 ~d~~~~~I~~~~~~g~~---~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~  230 (263)
T d1npea_         184 VDAGTHRAECLNPAQPG---RRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS  230 (263)
T ss_dssp             EETTTTEEEEEETTEEE---EEEEEECCCSEEEEEEE-TTEEEEEETTTTE
T ss_pred             EeCCCCEEEEEECCCCC---eEEEECCCCCcEEEEEE-CCEEEEEECCCCE
Confidence            99999999999998642   23333322468899998 5889999988775

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.7e-14  Score=118.74  Aligned_cols=184  Identities=16%  Similarity=0.207  Sum_probs=129.5

Q ss_pred             EEEeCCCCC--eEEEEEeccccccccCC-----CCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEE
Q 046018           12 LKWQGDELG--WTEFAVTTSQRKECVRP-----FAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQL   83 (310)
Q Consensus        12 ~~~~~~~~~--W~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~   83 (310)
                      ..++...+.  |++.....+.+.+..+.     ...........|.|||+|...++||+++... .|.++++++...+.+
T Consensus        35 id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~  114 (266)
T d1ijqa1          35 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL  114 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEE
Confidence            345554444  87755555555433221     0011223346799999998788999999874 499999988765544


Q ss_pred             EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecC
Q 046018           84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRD  162 (310)
Q Consensus        84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d  162 (310)
                      ...    ....|.+|+++|...++|+++.+                ..+.|++.+.++...+.+. .....|+||++++.
T Consensus       115 ~~~----~~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~  174 (266)
T d1ijqa1         115 FRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL  174 (266)
T ss_dssp             EEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETT
T ss_pred             EcC----CCCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccccceeeEEEeecc
Confidence            332    23579999999865569999854                2567999999866565544 56788999999999


Q ss_pred             CCeEEEEecCCceEEEEEccCCCCCcceeeee-C--CCCCCeeEECCCCCEEEEEecCCc
Q 046018          163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAE-L--PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +++|||++...++|.+++++|..   ...+.. .  ...|.+++++ ++.||+++...+.
T Consensus       175 ~~~lYw~d~~~~~I~~~~~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~  230 (266)
T d1ijqa1         175 SGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             ccEEEEecCCcCEEEEEECCCCC---EEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe
Confidence            88999999999999999998742   222322 2  2457899998 5789999987765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=1.3e-12  Score=109.04  Aligned_cols=164  Identities=17%  Similarity=0.277  Sum_probs=119.0

Q ss_pred             ceeceEEEeCCCCcEEEEECC--CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY--LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ..|.+++++.+.+..+++...  ..|.++++++.....+ .   ......|.+++++++|+ +|+++..           
T Consensus        70 ~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~-~---~~~~~~p~~~avd~~G~-i~v~~~~-----------  133 (279)
T d1q7fa_          70 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF-G---ATILQHPRGVTVDNKGR-IIVVECK-----------  133 (279)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE-C---TTTCSCEEEEEECTTSC-EEEEETT-----------
T ss_pred             cccccccccccccccceeccCCccccccccccccceeec-C---CCcccccceeccccCCc-EEEEeec-----------
Confidence            468889887745666666554  3488888876554333 1   23355789999999999 9999854           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPD  200 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~  200 (310)
                            .+++.++++++.....+.  .....|.+++++++++ +|+++...++|++|+.++..   ...+..  ....|.
T Consensus       134 ------~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~---~~~~g~~g~~~~P~  203 (279)
T d1q7fa_         134 ------VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPI  203 (279)
T ss_dssp             ------TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEE
T ss_pred             ------cceeeEeccCCceeecccccccccccceeeecccee-EEeeeccccceeeeecCCce---eeeecccccccCCc
Confidence                  567899998755444432  3456689999999886 99999999999999987642   122222  124689


Q ss_pred             eeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          201 NVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       201 ~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      +|++|++|+|||++..++..    +..++++|+++..+..
T Consensus       204 giavD~~G~i~Vad~~~~~~----v~~f~~~G~~~~~~~~  239 (279)
T d1q7fa_         204 GVGINSNGEILIADNHNNFN----LTIFTQDGQLISALES  239 (279)
T ss_dssp             EEEECTTCCEEEEECSSSCE----EEEECTTSCEEEEEEE
T ss_pred             ccccccCCeEEEEECCCCcE----EEEECCCCCEEEEEeC
Confidence            99999999999998766544    6778889998766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.54  E-value=2e-12  Score=108.91  Aligned_cols=208  Identities=11%  Similarity=0.035  Sum_probs=139.5

Q ss_pred             ceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018           50 LGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG  128 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~  128 (310)
                      .|..+++++|+||+++... .|+++|+++++.+.+ ..+     ..+..++.+++|+ +|++.                 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~~~-----~~~~~i~~~~dg~-l~va~-----------------   76 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALP-----FMGSALAKISDSK-QLIAS-----------------   76 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECS-----SCEEEEEEEETTE-EEEEE-----------------
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE-ECC-----CCcEEEEEecCCC-EEEEE-----------------
Confidence            5788898789999999774 599999999987644 221     2467899999998 99987                 


Q ss_pred             CCCceEEEEeCCCCeEEEEecC-----CcccceEEEecCCCeEEEEecC------CceEEEEEccCCCCCcceeeeeCCC
Q 046018          129 DKTGRLLKYEKTTKEVTILLQG-----LAFANGVALSRDRTFILIAETS------NCRILRFWLHGPNSGKQDVFAELPG  197 (310)
Q Consensus       129 ~~~g~v~~~d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~  197 (310)
                        ...++++|+++++.+.+...     ...+|.+.++|+|+ +|+++..      .+.++++.  .+   ....+.....
T Consensus        77 --~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~--~g---~~~~~~~~~~  148 (295)
T d2ghsa1          77 --DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KG---KVTKLFADIS  148 (295)
T ss_dssp             --TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TT---EEEEEEEEES
T ss_pred             --eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeec--CC---cEEEEeeccC
Confidence              34699999999988876532     23478999999998 8988643      23555553  21   2222222224


Q ss_pred             CCCeeEECCCCC-EEEEEecCCccceeeeeecc--cc-----ccE--EeeccchhhhhcccccCCCC--------ceEEE
Q 046018          198 FPDNVRSNSNGE-FWVALHAKKGLFGKLILLNS--WL-----GKT--LLKLPLSFRQLHSLLVGGKP--------HATAI  259 (310)
Q Consensus       198 ~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~--~~-----g~~--~~~~~~~~~~~~~~~~~~~~--------~~~~~  259 (310)
                      .|++++++++++ +|+++...+.     +..++  ..     ++.  ....+.....|.++++...+        ...+.
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~-----I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~  223 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNR-----LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVD  223 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCE-----EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             CcceeeecCCCceEEEeecccce-----eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceE
Confidence            689999999995 8899887765     33332  11     111  12222222344555544333        23577


Q ss_pred             EECCCCCEEEEEEcCCCCeecceeEEEEe---CCEEEEecCC
Q 046018          260 KLSEKGEVLEVLEDCEGKTLSFISEVEEK---DGQLWMGSVL  298 (310)
Q Consensus       260 ~~d~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~l~vgs~~  298 (310)
                      +++|+|+++..+..|.    ..++.++..   .++|||.+..
T Consensus       224 ~~dp~G~~~~~i~lP~----~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         224 RYDTDGNHIARYEVPG----KQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EECTTCCEEEEEECSC----SBEEEEEEESTTSCEEEEEEBC
T ss_pred             EecCCCcEeeEecCCC----CceEEEEEeCCCCCEEEEEECC
Confidence            8999999999887654    347777764   3689999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.50  E-value=1.3e-10  Score=96.32  Aligned_cols=254  Identities=10%  Similarity=0.124  Sum_probs=154.0

Q ss_pred             cccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC-ceEEEeCCCCeEEE
Q 046018            5 GVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL-GFQVVGPEGGLATQ   82 (310)
Q Consensus         5 ~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~-gi~~~d~~~~~~~~   82 (310)
                      +..++.|..||.++...+..                  ......|.++++++ +| .||++.... .|..+|..+++...
T Consensus         8 ~~~~~~v~v~D~~t~~~~~~------------------i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~   68 (301)
T d1l0qa2           8 NSESDNISVIDVTSNKVTAT------------------IPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIA   68 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEE------------------EECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ECCCCEEEEEECCCCeEEEE------------------EECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceee
Confidence            34667788888877633311                  11225789999999 65 588887664 49999999887543


Q ss_pred             EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC
Q 046018           83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD  162 (310)
Q Consensus        83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d  162 (310)
                      ....     ...|..++++++++.++++...                 ...+..++..+++..........+..++++||
T Consensus        69 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  126 (301)
T d1l0qa2          69 TVPA-----GSSPQGVAVSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD  126 (301)
T ss_dssp             EEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             eeec-----cccccccccccccccccccccc-----------------cceeeecccccceeeeeccccccceEEEeecC
Confidence            3221     2357899999999967776643                 56788899988876665566677899999999


Q ss_pred             CCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeeccccccEEeeccch
Q 046018          163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWLGKTLLKLPLS  241 (310)
Q Consensus       163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~  241 (310)
                      ++.++++......+..++....   ...........|..+++++++. +|++.......    ........+....+..+
T Consensus       127 g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  199 (301)
T d1l0qa2         127 GKKLYVTNNGDKTVSVINTVTK---AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI----SVIDTVTNSVIDTVKVE  199 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTT---EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEE----EEEETTTTEEEEEEECS
T ss_pred             CCeeeeeeccccceeeeecccc---ceeeecccCCCceEEEeeccccceeeeccccccc----ccccccceeeeeccccc
Confidence            9988888888888888886532   1111122334578899999885 66665554431    22223333333333222


Q ss_pred             hhhhcccccCCCCceEEEE-ECCCCCEEEEEEcCCCCee------cceeEEEEe-C-CEEEEecCCCCeEEEecc
Q 046018          242 FRQLHSLLVGGKPHATAIK-LSEKGEVLEVLEDCEGKTL------SFISEVEEK-D-GQLWMGSVLMPFIGIYNR  307 (310)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~-~d~~g~~~~~~~~~~g~~~------~~~~~~~~~-~-g~l~vgs~~~~~i~~~~~  307 (310)
                       ..+..+.+......+++. .+.....+..+....+...      ..+..++.. + .+||+++..++.|.++|.
T Consensus       200 -~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         200 -AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             -SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             -CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence             223333333333332222 2222222222222222111      134555554 3 468999888899999885

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.42  E-value=1.2e-11  Score=104.40  Aligned_cols=105  Identities=14%  Similarity=0.191  Sum_probs=83.8

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN  173 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~  173 (310)
                      .+.++++++||+ ||+++..                 .++|++++++ ++.+.+......|+++++++||+ ||+++...
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~-----------------~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHE-----------------VGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETT-----------------TTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CcCCEEECCCCC-EEEEeCC-----------------CCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            578999999999 9999854                 7889999998 45666666677899999999998 99998888


Q ss_pred             ceEEEEEccCCCCCcceeeeeC--CCCCCeeEECCCCCEEEEEecCCc
Q 046018          174 CRILRFWLHGPNSGKQDVFAEL--PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +.+++++..+.. +....+...  ...|++++++++|++|+++.....
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~  135 (302)
T d2p4oa1          89 DSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGA  135 (302)
T ss_dssp             TSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTE
T ss_pred             ceEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeecccccc
Confidence            999998876532 223334332  246789999999999999877665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.26  E-value=3.9e-09  Score=87.09  Aligned_cols=132  Identities=13%  Similarity=0.115  Sum_probs=98.2

Q ss_pred             cEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEe
Q 046018           60 DLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYE  138 (310)
Q Consensus        60 ~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d  138 (310)
                      .+||+....+ |..+|.+++++...+..  +   ..|.+++++|||++||++...                 .+.|..||
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~--g---~~p~~va~spdG~~l~v~~~~-----------------~~~i~v~d   60 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPV--G---SNPMGAVISPDGTKVYVANAH-----------------SNDVSIID   60 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC--S---SSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEEC--C---CCceEEEEeCCCCEEEEEECC-----------------CCEEEEEE
Confidence            5789887754 99999999986544332  1   358899999999988888743                 67899999


Q ss_pred             CCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018          139 KTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       139 ~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~  216 (310)
                      .++++..........|.+++++++++.++++......+..++....   ...........|..++++++|+.++....
T Consensus        61 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          61 TATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---TVAGTVKTGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEEET
T ss_pred             CCCCceeeeeeccccccccccccccccccccccccceeeecccccc---eeeeeccccccceEEEeecCCCeeeeeec
Confidence            9988776555556679999999999999998888889999887643   11122223345778999999976554443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=9.2e-09  Score=86.18  Aligned_cols=149  Identities=12%  Similarity=0.094  Sum_probs=97.5

Q ss_pred             cceeceEEEeCCCC-cEEEEECCC-ceEE--EeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           46 CGRPLGIRFDKKTG-DLYIADAYL-GFQV--VGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        46 ~~~p~gl~~d~~~g-~l~v~~~~~-gi~~--~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      .+.|.+|+++| +| .||++.... .|..  ++..+...+......   ....|.+++++|||++||+++..        
T Consensus        36 ~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~---~~~~p~~l~~spDg~~l~v~~~~--------  103 (333)
T d1ri6a_          36 PGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYN--------  103 (333)
T ss_dssp             SSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETT--------
T ss_pred             CCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc---cCCCceEEEEcCCCCEEeecccC--------
Confidence            36788999999 55 588888764 4554  455555544333321   22368899999999988888743        


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEE---EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCccee--eee--
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTI---LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDV--FAE--  194 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~--~~~--  194 (310)
                               .+.+..++.+......   .......+.+++++||++.+++++.....|..|+...........  ...  
T Consensus       104 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  174 (333)
T d1ri6a_         104 ---------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV  174 (333)
T ss_dssp             ---------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             ---------CCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeee
Confidence                     4556666554443332   223455688999999999999998888899999876432111111  111  


Q ss_pred             CCCCCCeeEECCCCCEEEEEe
Q 046018          195 LPGFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       195 ~~~~p~~i~~d~~G~l~va~~  215 (310)
                      ....|..+++++++...+...
T Consensus       175 ~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         175 EGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             TTCCEEEEEECTTSSEEEEEE
T ss_pred             cCCCccEEEEeccceeEEeec
Confidence            224678899999997655444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.14  E-value=1.2e-09  Score=94.25  Aligned_cols=156  Identities=17%  Similarity=0.128  Sum_probs=97.1

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeC-CCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGP-EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .+||+++++++...||+++... .|..++. ..+.+..........+...|++++++|+|+++|++...           
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~-----------  213 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-----------  213 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-----------
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC-----------
Confidence            4789999999444599998874 4655532 23444333222222345689999999999989998854           


Q ss_pred             hhcCCCCceEEEEeCCCCeE---EEEe-----c------------CCcccceEEEecCCCeEEEEecCCce-----EEEE
Q 046018          125 ILSGDKTGRLLKYEKTTKEV---TILL-----Q------------GLAFANGVALSRDRTFILIAETSNCR-----ILRF  179 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~---~~~~-----~------------~~~~~~gi~~~~d~~~lyv~~~~~~~-----i~~~  179 (310)
                            .+.|..|+.++++.   ....     .            ....+..|+++|||++||+++..++.     |..|
T Consensus       214 ------~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~  287 (365)
T d1jofa_         214 ------GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF  287 (365)
T ss_dssp             ------TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred             ------CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEE
Confidence                  56676666544321   1110     0            01135689999999999999765443     8888


Q ss_pred             EccCC-CCCcceeeee---CCCCCCeeEECC-CCC-EEEEEecCCc
Q 046018          180 WLHGP-NSGKQDVFAE---LPGFPDNVRSNS-NGE-FWVALHAKKG  219 (310)
Q Consensus       180 ~~~~~-~~~~~~~~~~---~~~~p~~i~~d~-~G~-l~va~~~~~~  219 (310)
                      +.+.. .......+..   ....|.++++++ +|+ |||++..++.
T Consensus       288 ~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~  333 (365)
T d1jofa_         288 KLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             EecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCe
Confidence            76532 1111112222   235799999997 787 7777666564

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.13  E-value=1.2e-08  Score=85.32  Aligned_cols=157  Identities=8%  Similarity=0.001  Sum_probs=101.9

Q ss_pred             CCcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCC-ceEEEeCCCC
Q 046018            1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYL-GFQVVGPEGG   78 (310)
Q Consensus         1 ~~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~-gi~~~d~~~~   78 (310)
                      |++++..++.|..||..+..=+.    .           .........|.++++++ +|+ ||++.... .|..+|.+++
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~----~-----------i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~   66 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDK----V-----------ITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTG   66 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEE----E-----------EECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEcCCCEEEEEECCCCeEEE----E-----------EECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCC
Confidence            45677788999999997763111    0           01111235688999999 664 77886654 4999999998


Q ss_pred             eEEEEEeec-CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceE
Q 046018           79 LATQLVTEA-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGV  157 (310)
Q Consensus        79 ~~~~~~~~~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi  157 (310)
                      +........ .......+.+++++|+++++|++........      .........+..+|..+++..........+.++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  140 (337)
T d1pbyb_          67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL------THFEVQPTRVALYDAETLSRRKAFEAPRQITML  140 (337)
T ss_dssp             CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS------SCEEECCCEEEEEETTTTEEEEEEECCSSCCCE
T ss_pred             cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCccee------eeccccccceeeccccCCeEEEeccccCCceEE
Confidence            765433322 1222456889999999998888763211000      000112557888999888776655556678999


Q ss_pred             EEecCCCeEEEEecCCceEEEEEcc
Q 046018          158 ALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       158 ~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                      +++||++++|+++   +.+..++..
T Consensus       141 ~~s~dg~~l~~~~---~~~~~~d~~  162 (337)
T d1pbyb_         141 AWARDGSKLYGLG---RDLHVMDPE  162 (337)
T ss_dssp             EECTTSSCEEEES---SSEEEEETT
T ss_pred             EEcCCCCEEEEEc---CCcceeeee
Confidence            9999999888874   234445543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=5.4e-08  Score=81.31  Aligned_cols=136  Identities=11%  Similarity=0.012  Sum_probs=87.3

Q ss_pred             cEEEEECCC-ceEEEeCCC-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018           60 DLYIADAYL-GFQVVGPEG-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY  137 (310)
Q Consensus        60 ~l~v~~~~~-gi~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~  137 (310)
                      .+||+.... .|..++.+. +.++.+.....+   ..+.+|+++|||++||++...                 ++.|..|
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~---~~v~~la~spDG~~L~v~~~~-----------------d~~i~~~   64 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVP---GQVQPMVVSPDKRYLYVGVRP-----------------EFRVLAY   64 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SCCCCEEECTTSSEEEEEETT-----------------TTEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCC---CCEeEEEEeCCCCEEEEEECC-----------------CCeEEEE
Confidence            588888764 466666543 333333222111   368899999999989988743                 5666665


Q ss_pred             eC--CCCeEEEE--ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEE
Q 046018          138 EK--TTKEVTIL--LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVA  213 (310)
Q Consensus       138 d~--~~~~~~~~--~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va  213 (310)
                      +.  .+...+..  ......|.+++++|||++||+++.....|..++.+.............+..|.++.++++|+..+.
T Consensus        65 ~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~  144 (333)
T d1ri6a_          65 RIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWV  144 (333)
T ss_dssp             EECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEE
T ss_pred             EEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeec
Confidence            54  43333332  233456899999999999999988888998888764322111112223456889999999975444


Q ss_pred             Ee
Q 046018          214 LH  215 (310)
Q Consensus       214 ~~  215 (310)
                      ..
T Consensus       145 ~~  146 (333)
T d1ri6a_         145 PA  146 (333)
T ss_dssp             EE
T ss_pred             cc
Confidence            33

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.09  E-value=6e-08  Score=83.39  Aligned_cols=167  Identities=11%  Similarity=0.110  Sum_probs=96.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..|..|+++++...||++.... ..+.++.+++........ .   ...|..++++++++.+|++.....- ..-+....
T Consensus        40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~-~---~~~p~~v~~~~~~~~~~v~~a~~~~-~~v~~~~~  114 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-I---GGHPRANDADTNTRAIFLLAAKQPP-YAVYANPF  114 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-C---CSSGGGGCTTSCCEEEEEEECSSTT-CCEEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeec-C---CCCcEEEEECCCCCEEEEEEecCCC-CEEEEeEc
Confidence            4467899999555788886543 266677776544322221 1   2368899999999878887643100 00000000


Q ss_pred             hcCCCCceEEEEeCCCCeEEE-E----ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeee--CCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTI-L----LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAE--LPG  197 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~-~----~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~  197 (310)
                      ......+.+..++.. ++... .    ......+++++++|||++||+++.+.++|++|+.+.. ..........  ...
T Consensus       115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         115 YKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             SSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             cCCCCcceeEeeeec-ceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            000112233444432 22221 1    1233457899999999999999999999999986532 1111111211  224


Q ss_pred             CCCeeEECCCCC-EEEEEecCCc
Q 046018          198 FPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       198 ~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      .|..++++++|+ +|+++...+.
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~  216 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNR  216 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTE
T ss_pred             ceEEEEECCCCceEEEeccCCCE
Confidence            689999999997 5566655554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.03  E-value=1.3e-08  Score=85.46  Aligned_cols=143  Identities=13%  Similarity=0.039  Sum_probs=94.0

Q ss_pred             eEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           51 GIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      |+++++ +++.+++.. .+.|..+|.+++++......+   ....|.+++++|||+++|++...                
T Consensus         1 g~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~---~~~~p~~l~~spDG~~l~v~~~~----------------   60 (346)
T d1jmxb_           1 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMP---DKFGPGTAMMAPDNRTAYVLNNH----------------   60 (346)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECS---SCCSSCEEEECTTSSEEEEEETT----------------
T ss_pred             CccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcC---CCCCcceEEECCCCCEEEEEECC----------------
Confidence            567888 666555444 456999999999865443322   12368899999999988998753                


Q ss_pred             CCceEEEEeCCCCeEEEEecC-------CcccceEEEecCCCeEEEEec-----------CCceEEEEEccCCCCCccee
Q 046018          130 KTGRLLKYEKTTKEVTILLQG-------LAFANGVALSRDRTFILIAET-----------SNCRILRFWLHGPNSGKQDV  191 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~-------~~~~~gi~~~~d~~~lyv~~~-----------~~~~i~~~~~~~~~~~~~~~  191 (310)
                       .+.|..||.++++.......       ...|.+++++|||+.+|++..           ....+..++...+.......
T Consensus        61 -~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  139 (346)
T d1jmxb_          61 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  139 (346)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence             67899999998866542211       124789999999999999864           24566777765322111111


Q ss_pred             eeeCCCCCCeeEECCCCCEEEEE
Q 046018          192 FAELPGFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       192 ~~~~~~~p~~i~~d~~G~l~va~  214 (310)
                      ....+.....+...+++.++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         140 TFPMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             EEECCSSCCCEEECTTSCEEEES
T ss_pred             eeeccCceEEEEecCCCEEEEeC
Confidence            11233344556677777777753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.01  E-value=3.3e-08  Score=87.05  Aligned_cols=152  Identities=11%  Similarity=-0.017  Sum_probs=100.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceE----EeCCCCEEEEEeCCCchhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD----IDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~----~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ..|++++++|+...||++...+.|..+|.++++.+.......+   ..+.+++    ++|||++||++...         
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~---~~~~~~~~s~~~SpDG~~l~vs~~~---------  129 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---SEARSIETSKMEGWEDKYAIAGAYW---------  129 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---SEEEEEEECCSTTCTTTEEEEEEEE---------
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC---CCCCCeEEecccCCCCCEEEEEcCC---------
Confidence            4689999999444577776655688899877654333222111   1344444    45799978887743         


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEecC------------CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQG------------LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD  190 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~------------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~  190 (310)
                              .+.+..||.++++.......            ...+.++++++|++.++++....+.|..++....+.....
T Consensus       130 --------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~  201 (432)
T d1qksa2         130 --------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  201 (432)
T ss_dssp             --------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             --------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEE
Confidence                    67899999988876543211            1223568899999989999888999999987643211111


Q ss_pred             eeeeCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          191 VFAELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       191 ~~~~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                      .+ .....|.+++++++|+ ++++......
T Consensus       202 ~i-~~g~~~~~~~~spdg~~~~va~~~~~~  230 (432)
T d1qksa2         202 EI-SAERFLHDGGLDGSHRYFITAANARNK  230 (432)
T ss_dssp             EE-ECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             EE-cccCccccceECCCCCEEEEeccccce
Confidence            11 2335688999999997 5566555544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.91  E-value=9.9e-08  Score=79.52  Aligned_cols=132  Identities=16%  Similarity=0.057  Sum_probs=88.0

Q ss_pred             EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC
Q 046018           61 LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT  140 (310)
Q Consensus        61 l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  140 (310)
                      ++.+...+.|..+|..++++......  ......|.+++++|||+++|++...                 .+.|..||.+
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~--~~~~~~~~~i~~spDg~~l~v~~~~-----------------~~~v~v~D~~   64 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNK-----------------SESLVKIDLV   64 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETT-----------------TTEEEEEETT
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEEC--CCCCCCccEEEECCCCCEEEEEECC-----------------CCeEEEEECC
Confidence            44444445688999998876544332  1223468899999999988888643                 6789999999


Q ss_pred             CCeEEEEecC------CcccceEEEecCCCeEEEEecC-----------CceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          141 TKEVTILLQG------LAFANGVALSRDRTFILIAETS-----------NCRILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       141 ~~~~~~~~~~------~~~~~gi~~~~d~~~lyv~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                      +++.......      ...+.+++++||++.+|++...           ...+..++....   ........+..|.+++
T Consensus        65 t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~  141 (337)
T d1pbyb_          65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEAPRQITMLA  141 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEECCSSCCCEE
T ss_pred             CCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC---eEEEeccccCCceEEE
Confidence            8876542211      2346799999999999887542           346666665532   1111112345688999


Q ss_pred             ECCCCCEEEEE
Q 046018          204 SNSNGEFWVAL  214 (310)
Q Consensus       204 ~d~~G~l~va~  214 (310)
                      ++++|...++.
T Consensus       142 ~s~dg~~l~~~  152 (337)
T d1pbyb_         142 WARDGSKLYGL  152 (337)
T ss_dssp             ECTTSSCEEEE
T ss_pred             EcCCCCEEEEE
Confidence            99999644443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.87  E-value=1.6e-07  Score=78.98  Aligned_cols=135  Identities=13%  Similarity=0.100  Sum_probs=93.8

Q ss_pred             EeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018           54 FDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR  133 (310)
Q Consensus        54 ~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~  133 (310)
                      ++|.+|++++....+.|+.+|.+++..+++..      ...+.+++++|||++|+++...                ....
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~------~~~v~~~~~spDg~~l~~~~~~----------------~g~~   67 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE------PLRIRYVRRGGDTKVAFIHGTR----------------EGDF   67 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECSC------CSCEEEEEECSSSEEEEEEEET----------------TEEE
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEccC------CCCEEEEEECCCCCEEEEEEcC----------------CCCE
Confidence            56546777666655568888998887665421      2357889999999967665522                1235


Q ss_pred             EEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEE
Q 046018          134 LLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVA  213 (310)
Q Consensus       134 v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va  213 (310)
                      |+.||.++++.+.+.........++++||++.|+.+ ...+.++.++.++...  ...+.........+++.++|++.+.
T Consensus        68 v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~la~  144 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKP--TVIERSREAMITDFTISDNSRFIAY  144 (360)
T ss_dssp             EEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             EEEEECCCCcEEEeeCCCceEEeeeeccccccccee-ccccccccccccccce--eeeeecccccccchhhccceeeeee
Confidence            889999988888766666667899999999966655 6678899999875421  1222223344577999999976554

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.86  E-value=4.3e-07  Score=79.67  Aligned_cols=138  Identities=7%  Similarity=0.001  Sum_probs=89.3

Q ss_pred             CcEE-EEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE
Q 046018           59 GDLY-IADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK  136 (310)
Q Consensus        59 g~l~-v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~  136 (310)
                      .+++ |+....+ |..+|.+++++......  +   ..|.+++++|||+++|+++                  .++.+..
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~--g---~~~~~v~fSpDG~~l~~~s------------------~dg~v~~   87 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT--G---YAVHISRLSASGRYLFVIG------------------RDGKVNM   87 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEEC--S---SCEEEEEECTTSCEEEEEE------------------TTSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeC--C---CCeeEEEECCCCCEEEEEc------------------CCCCEEE
Confidence            3454 5655554 88999999886544332  2   3589999999999888876                  2678999


Q ss_pred             EeCCCCeEEEE--ecCCcccceEEE----ecCCCeEEEEecCCceEEEEEccCCCCCcceee-ee--------CCCCCCe
Q 046018          137 YEKTTKEVTIL--LQGLAFANGVAL----SRDRTFILIAETSNCRILRFWLHGPNSGKQDVF-AE--------LPGFPDN  201 (310)
Q Consensus       137 ~d~~~~~~~~~--~~~~~~~~gi~~----~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~-~~--------~~~~p~~  201 (310)
                      ||.++++.+..  ......+.++++    +|||++||++....+.|.+||.++......... ..        ..+.+..
T Consensus        88 ~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
T d1qksa2          88 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  167 (432)
T ss_dssp             EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             EEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeE
Confidence            99877654322  233445667665    569999999988899999999875422111000 00        1122345


Q ss_pred             eEECCCCCEEEEEe-cCCc
Q 046018          202 VRSNSNGEFWVALH-AKKG  219 (310)
Q Consensus       202 i~~d~~G~l~va~~-~~~~  219 (310)
                      ++++++|..++... ..+.
T Consensus       168 v~~s~dg~~~~vs~~~~~~  186 (432)
T d1qksa2         168 ILASHYRPEFIVNVKETGK  186 (432)
T ss_dssp             EEECSSSSEEEEEETTTTE
T ss_pred             EEECCCCCEEEEEEccCCe
Confidence            78899997655444 4443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.79  E-value=4.3e-06  Score=69.60  Aligned_cols=187  Identities=13%  Similarity=0.025  Sum_probs=103.1

Q ss_pred             EEEeCCCCCeEEEEEeccccccccCCCCCccc-cccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCC
Q 046018           12 LKWQGDELGWTEFAVTTSQRKECVRPFAPDIE-HICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAG   89 (310)
Q Consensus        12 ~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~   89 (310)
                      ..++++.+.-+-..+..+..++........+. ........++++| +|++.++...++ |..+|..++........ ..
T Consensus        23 ~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~~~~~~-~~  100 (311)
T d1nr0a1          23 LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTI-PV  100 (311)
T ss_dssp             CEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEE-EC
T ss_pred             EEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeecccccccccc-cc
Confidence            34444444322122333444554443222222 2234567899999 777666555444 77778776542111111 11


Q ss_pred             ccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEE
Q 046018           90 QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILI  168 (310)
Q Consensus        90 ~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv  168 (310)
                       ....+.+|+++++++++.++...                ....+..|+.++++....... ......++++|+++.+++
T Consensus       101 -~~~~v~~v~~s~d~~~l~~~~~~----------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~  163 (311)
T d1nr0a1         101 -FSGPVKDISWDSESKRIAAVGEG----------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII  163 (311)
T ss_dssp             -SSSCEEEEEECTTSCEEEEEECC----------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             -ccCcccccccccccccccccccc----------------ccccccccccccccccccccccccccccccccccceeeec
Confidence             11246789999999944444321                133355666665543322222 233578999999987777


Q ss_pred             EecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018          169 AETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       169 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      +.+..+.|.+||.....  ..............++++++|+++++....+.
T Consensus       164 sgs~d~~i~i~d~~~~~--~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             EEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccccccccccc--cccccccccccccccccCcccccccccccccc
Confidence            77778899999976421  11111111233467899999988777665554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2e-05  Score=65.86  Aligned_cols=148  Identities=11%  Similarity=0.048  Sum_probs=91.7

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ +|+..++... +.|..+|......+...... . .......+++++++. +.++..             
T Consensus        98 ~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~-~l~s~~-------------  160 (337)
T d1gxra_          98 NYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELT-S-SAPACYALAISPDSK-VCFSCC-------------  160 (337)
T ss_dssp             SBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEE-C-SSSCEEEEEECTTSS-EEEEEE-------------
T ss_pred             CcEEEEEEcC-CCCEEEEeecccccccccccccccccccccc-c-ccccccccccccccc-cccccc-------------
Confidence            3466899999 6665554444 44777787654332222211 1 112356788999998 555442             


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS  204 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  204 (310)
                          ..+.+..|+..+++....... ......+++++++..++++ ...+.|..|+...+.   .............+++
T Consensus       161 ----~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~-~~d~~v~i~d~~~~~---~~~~~~~~~~i~~l~~  232 (337)
T d1gxra_         161 ----SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGR---QLQQHDFTSQIFSLGY  232 (337)
T ss_dssp             ----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE---EEEEEECSSCEEEEEE
T ss_pred             ----ccccccccccccccccccccccccccccccccccccccccc-cccccccccccccce---eecccccccceEEEEE
Confidence                266799999888776654433 3345789999999866665 567899999976431   1111123344577899


Q ss_pred             CCCCCEEEEEecCCc
Q 046018          205 NSNGEFWVALHAKKG  219 (310)
Q Consensus       205 d~~G~l~va~~~~~~  219 (310)
                      ++++++.++....+.
T Consensus       233 ~~~~~~l~~~~~d~~  247 (337)
T d1gxra_         233 CPTGEWLAVGMESSN  247 (337)
T ss_dssp             CTTSSEEEEEETTSC
T ss_pred             cccccccceeccccc
Confidence            999987776555554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.1e-06  Score=68.68  Aligned_cols=145  Identities=4%  Similarity=-0.003  Sum_probs=95.0

Q ss_pred             eeceEEEeCCCCcEEEE-ECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIA-DAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~-~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....+++++ ++.+.++ .....|..++..+++.......    ....+..++++++++.++++.               
T Consensus       143 ~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~~~~~~~---------------  202 (337)
T d1gxra_         143 ACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQG----HTDGASCIDISNDGTKLWTGG---------------  202 (337)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEE---------------
T ss_pred             ccccccccc-cccccccccccccccccccccccccccccc----ccccccccccccccccccccc---------------
Confidence            445678888 6655554 4445588889888875433221    122467889999999565554               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS  206 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  206 (310)
                         .++.+..||..+++.............++++|+++.|+++ ..++.|..|+.+...   .............+++++
T Consensus       203 ---~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~-~~d~~i~i~d~~~~~---~~~~~~~~~~i~~v~~s~  275 (337)
T d1gxra_         203 ---LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAY  275 (337)
T ss_dssp             ---TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSC---EEEECCCSSCEEEEEECT
T ss_pred             ---ccccccccccccceeecccccccceEEEEEccccccccee-ccccccccccccccc---cccccccccccceEEECC
Confidence               2678999998877654443334456789999999866554 667899999987431   111111123356789999


Q ss_pred             CCCEEEEEecCCc
Q 046018          207 NGEFWVALHAKKG  219 (310)
Q Consensus       207 ~G~l~va~~~~~~  219 (310)
                      +|++.++....+.
T Consensus       276 ~g~~l~s~s~Dg~  288 (337)
T d1gxra_         276 CGKWFVSTGKDNL  288 (337)
T ss_dssp             TSSEEEEEETTSE
T ss_pred             CCCEEEEEeCCCe
Confidence            9988777665553

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.71  E-value=6.9e-06  Score=71.38  Aligned_cols=172  Identities=6%  Similarity=-0.047  Sum_probs=104.5

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCc-cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQ-PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..|++++++|+...||++...+.|..+|.++++.........+. +...+.+++++|||++++++...            
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~------------  129 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW------------  129 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------------
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC------------
Confidence            46889999993335677765556889999887654433321111 11122334455799978887633            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC------------CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG------------LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA  193 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~------------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~  193 (310)
                           .+.+..||.+++........            ...+..++.++|+..++++....+.+..++......... ...
T Consensus       130 -----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~  203 (426)
T d1hzua2         130 -----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-TSI  203 (426)
T ss_dssp             -----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE-EEE
T ss_pred             -----CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee-EEe
Confidence                 56788899888766543321            112345778888888888888888888877553221111 112


Q ss_pred             eCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeecc
Q 046018          194 ELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLP  239 (310)
Q Consensus       194 ~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~  239 (310)
                      .....|.++.++++|++++........+   ...+...++....++
T Consensus       204 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~---~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         204 GAAPFLADGGWDSSHRYFMTAANNSNKV---AVIDSKDRRLSALVD  246 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEETTCSEE---EEEETTTTEEEEEEE
T ss_pred             ccCCccEeeeECCCCcEEEeeeecccce---eeeecccccEEEEec
Confidence            2334678999999998666655444321   333445666655443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.70  E-value=7.8e-07  Score=77.59  Aligned_cols=103  Identities=10%  Similarity=0.047  Sum_probs=66.4

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE----CC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS----NS  206 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~----d~  206 (310)
                      +|.|..||.++++..........|.+++|+|||++||+++ ..+.|.+||.++.+......+ .....|.++.+    .+
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t~~~~~~~~i-~~~~~~~~~~~s~~~sp  118 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG-RDARIDMIDLWAKEPTKVAEI-KIGIEARSVESSKFKGY  118 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCEEEEEE-ECCSEEEEEEECCSTTC
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe-CCCCEEEEEccCCceeEEEEE-eCCCCCcceEEeeeecC
Confidence            8899999999988765444556799999999999998875 457999999875432111111 11223455544    56


Q ss_pred             CCC-EEEEEecCCccceeeeeeccccccEEeecc
Q 046018          207 NGE-FWVALHAKKGLFGKLILLNSWLGKTLLKLP  239 (310)
Q Consensus       207 ~G~-l~va~~~~~~~~~~~i~~~~~~g~~~~~~~  239 (310)
                      ||+ ++++....+.+    ...+...++.+..+.
T Consensus       119 DG~~l~v~~~~~~~v----~i~d~~~~~~~~~~~  148 (426)
T d1hzua2         119 EDRYTIAGAYWPPQF----AIMDGETLEPKQIVS  148 (426)
T ss_dssp             TTTEEEEEEEESSEE----EEEETTTCCEEEEEE
T ss_pred             CCCEEEEeecCCCeE----EEEcCCccceeEEee
Confidence            886 56777666642    233344555554443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.64  E-value=1.4e-06  Score=72.56  Aligned_cols=147  Identities=15%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             ceeceEEEeCCCCcEEEEECC--Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY--LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~--~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ..+..+++++ ++.++++...  .. +..++.++++.....   .+ ....+..++++|+++.++++..           
T Consensus       103 ~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l---~~-h~~~v~~v~~~~~~~~~l~sgs-----------  166 (311)
T d1nr0a1         103 GPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNL---TG-QARAMNSVDFKPSRPFRIISGS-----------  166 (311)
T ss_dssp             SCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCC---CC-CSSCEEEEEECSSSSCEEEEEE-----------
T ss_pred             Cccccccccc-cccccccccccccccccccccccccccccc---cc-cccccccccccccceeeecccc-----------
Confidence            4566899999 6665444332  22 556677665432111   11 1124678999999984455432           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee----CC--
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE----LP--  196 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~----~~--  196 (310)
                            .++.|..||..+++........ .....++++|+++.++.+ ...+.|.+|+...+..  ...+..    ..  
T Consensus       167 ------~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~-~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~h  237 (311)
T d1nr0a1         167 ------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST-GGDGTIVLYNGVDGTK--TGVFEDDSLKNVAH  237 (311)
T ss_dssp             ------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCE--EEECBCTTSSSCSS
T ss_pred             ------cccccccccccccccccccccccccccccccCccccccccc-cccccccccccccccc--cccccccccccccc
Confidence                  2678999999877666544443 335799999999855544 6678999999764311  111111    11  


Q ss_pred             -CCCCeeEECCCCCEEEEEecCC
Q 046018          197 -GFPDNVRSNSNGEFWVALHAKK  218 (310)
Q Consensus       197 -~~p~~i~~d~~G~l~va~~~~~  218 (310)
                       +....++++++|++.++....+
T Consensus       238 ~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         238 SGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccCCCCCEEEEEeCCC
Confidence             1235688999998777655444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.60  E-value=2.6e-07  Score=80.59  Aligned_cols=123  Identities=7%  Similarity=-0.044  Sum_probs=76.4

Q ss_pred             eeceEEE--eCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           48 RPLGIRF--DKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        48 ~p~gl~~--d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      +|+....  .++...|||++... .|.++|.++.+...+...+.   ...|++++++++|+++||+..............
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            4544333  35233699998874 59999999998776655432   246899999999998898864321100000000


Q ss_pred             hhc-CCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018          125 ILS-GDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN  173 (310)
Q Consensus       125 ~~~-~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~  173 (310)
                      .+. ......+..+|+++.+..........|.+++++|||+++|++...+
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred             ccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCC
Confidence            000 0012235568888765543333345799999999999999987554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.53  E-value=5.1e-05  Score=61.73  Aligned_cols=147  Identities=19%  Similarity=0.207  Sum_probs=90.0

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....+++.+ +|+++++.....+..++............ .......+..++++++|+ +.++..              
T Consensus        56 ~~v~~v~~~~-~g~~~~~~~d~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~-~~~~~~--------------  118 (299)
T d1nr0a2          56 TMITGIKTTS-KGDLFTVSWDDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLAVSADGD-IAVAAC--------------  118 (299)
T ss_dssp             SCEEEEEECT-TSCEEEEETTTEEEEECSSSSSSCTTSCC-EEECSSCEEEEEECTTSS-CEEEEE--------------
T ss_pred             CcEEEEEeec-cceeecccceeeEEEeccCCccccccccc-cccccccccccccccccc-cccccc--------------
Confidence            3456899998 88998887776777777654322110000 001122467889999999 555542              


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS  206 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  206 (310)
                          .+.+..|+..  +..... .......++++|+++.++++ ..++.|..||..++........ ..+.....+++++
T Consensus       119 ----~~~i~~~~~~--~~~~~~-~~~~~~~~~~s~~~~~l~~g-~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~  189 (299)
T d1nr0a2         119 ----YKHIAIYSHG--KLTEVP-ISYNSSCVALSNDKQFVAVG-GQDSKVHVYKLSGASVSEVKTI-VHPAEITSVAFSN  189 (299)
T ss_dssp             ----SSEEEEEETT--EEEEEE-CSSCEEEEEECTTSCEEEEE-ETTSEEEEEEEETTEEEEEEEE-ECSSCEEEEEECT
T ss_pred             ----cccccccccc--cccccc-cccccccccccccccccccc-cccccccccccccccccccccc-ccccccccccccc
Confidence                4567778753  333322 23346779999999855554 6678999999875422111111 1233457789999


Q ss_pred             CCCEEEEEecCCc
Q 046018          207 NGEFWVALHAKKG  219 (310)
Q Consensus       207 ~G~l~va~~~~~~  219 (310)
                      +|++.++....+.
T Consensus       190 ~~~~l~~~~~d~~  202 (299)
T d1nr0a2         190 NGAFLVATDQSRK  202 (299)
T ss_dssp             TSSEEEEEETTSC
T ss_pred             ccccccccccccc
Confidence            9987777666554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.51  E-value=1.1e-05  Score=68.06  Aligned_cols=111  Identities=11%  Similarity=-0.045  Sum_probs=73.4

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC-
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS-  172 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~-  172 (310)
                      -.++++++|+|+++|+++...             ....+.|+.+|.++++........ .+.+++++|||++||++... 
T Consensus        22 p~~~~a~spdg~~~~~~~~~~-------------~~~~~~v~v~D~~tg~~~~~~~~~-~~~~~a~SpDG~~l~va~~~~   87 (373)
T d2madh_          22 PTNDEAPGADGRRSYINLPAH-------------HSAIIQQWVLDAGSGSILGHVNGG-FLPNPVAAHSGSEFALASTSF   87 (373)
T ss_pred             CccccccCCCCCEEEEEcccc-------------cCCCceEEEEECCCCCEEEEEeCC-CCccEEEcCCCCEEEEEeecC
Confidence            357889999999999987542             123567999999988766544333 34479999999999998643 


Q ss_pred             --------CceEEEEEccCCCCCcceeee-----eCCCCCCeeEECCCCC-EEEEEecCC
Q 046018          173 --------NCRILRFWLHGPNSGKQDVFA-----ELPGFPDNVRSNSNGE-FWVALHAKK  218 (310)
Q Consensus       173 --------~~~i~~~~~~~~~~~~~~~~~-----~~~~~p~~i~~d~~G~-l~va~~~~~  218 (310)
                              .+.|.+||..+.+........     .....|.++.++++|. +++......
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  147 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC
Confidence                    367899988754221000000     0112467889988884 666665543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=3.4e-07  Score=76.45  Aligned_cols=101  Identities=7%  Similarity=0.012  Sum_probs=70.7

Q ss_pred             ceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEEecCCCeEEEEecCCc
Q 046018           97 DLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVALSRDRTFILIAETSNC  174 (310)
Q Consensus        97 ~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~  174 (310)
                      +++++++++++++++                  ..+.|..||.++++.....  .....|.+++++|||+++|++...++
T Consensus         1 g~a~~~~~~~l~~~~------------------~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~   62 (346)
T d1jmxb_           1 GPALKAGHEYMIVTN------------------YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG   62 (346)
T ss_dssp             CCCCCTTCEEEEEEE------------------TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             CccCCCCCcEEEEEc------------------CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCC
Confidence            357788888555554                  3678999999998775422  33456899999999999999988899


Q ss_pred             eEEEEEccCCCCCcceeeeeC----CCCCCeeEECCCCC-EEEEEe
Q 046018          175 RILRFWLHGPNSGKQDVFAEL----PGFPDNVRSNSNGE-FWVALH  215 (310)
Q Consensus       175 ~i~~~~~~~~~~~~~~~~~~~----~~~p~~i~~d~~G~-l~va~~  215 (310)
                      .|.+||...++..........    ...|.++++++||+ +|++..
T Consensus        63 ~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            999999875422110000001    12578999999995 777653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.49  E-value=8.3e-05  Score=61.89  Aligned_cols=155  Identities=10%  Similarity=-0.078  Sum_probs=95.4

Q ss_pred             eceEEEeCCCCcEEEEECC----------CceEEEeCCCCeEEEEEeecCC---ccccCCcceEEeCCCCEEEEEeCCCc
Q 046018           49 PLGIRFDKKTGDLYIADAY----------LGFQVVGPEGGLATQLVTEAAG---QPLRFTNDLDIDEHKGVIYFTDSSTS  115 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~----------~gi~~~d~~~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~~l~v~~~~~~  115 (310)
                      ..+++++++...||++...          +.|..+|..+++..........   .....|..++++++|+++++++..  
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--  126 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS--  126 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS--
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC--
Confidence            3379999944468887642          2388889998876544333211   123467899999999988888743  


Q ss_pred             hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC--------CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCC
Q 046018          116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG--------LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSG  187 (310)
Q Consensus       116 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~  187 (310)
                                    ....+..++..+++.......        ......+++++|++.+++.....+.+..++.......
T Consensus       127 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~  192 (355)
T d2bbkh_         127 --------------PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE  192 (355)
T ss_dssp             --------------SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred             --------------CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce
Confidence                          245677788877765432211        1123468899999989988888888888776532221


Q ss_pred             cceeeeeC--CCCCCe-eEECCCCCEEEEEecCCc
Q 046018          188 KQDVFAEL--PGFPDN-VRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       188 ~~~~~~~~--~~~p~~-i~~d~~G~l~va~~~~~~  219 (310)
                      ....+...  ...+.. +..+.+|.+++.....+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  227 (355)
T d2bbkh_         193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD  227 (355)
T ss_dssp             TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS
T ss_pred             ecceeeeccccCCCCeEEEecCCCeEEEEecCCCc
Confidence            11111110  011222 344567788888776664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.49  E-value=8.8e-05  Score=62.70  Aligned_cols=148  Identities=8%  Similarity=-0.092  Sum_probs=92.0

Q ss_pred             eceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ...+++++ +|++.++....+ |..+|.++++.+.+... .+- ...+++|+++|+++ +.++..               
T Consensus        10 It~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH-~~~V~~l~fsp~~~-~l~s~s---------------   70 (371)
T d1k8kc_          10 ISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEH-NGQVTGVDWAPDSN-RIVTCG---------------   70 (371)
T ss_dssp             CCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECC-SSCEEEEEEETTTT-EEEEEE---------------
T ss_pred             eEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCC-CCCEEEEEECCCCC-EEEEEE---------------
Confidence            35789999 787776655544 77788887765544322 111 12468899999999 444432               


Q ss_pred             CCCCceEEEEeCCCCeEEEEe--cC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC---CCCCCe
Q 046018          128 GDKTGRLLKYEKTTKEVTILL--QG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL---PGFPDN  201 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~--~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~  201 (310)
                        .++.|..||.+++..+...  .. ......++++|+++.++++ +.++.|..++.+..... .......   ......
T Consensus        71 --~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~-s~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          71 --TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG-SGSRVISICYFEQENDW-WVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             --TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEE-ETTSSEEEEEEETTTTE-EEEEEECTTCCSCEEE
T ss_pred             --CCCeEEEEeecccccccccccccccccccccccccccccceee-cccCcceeeeeeccccc-cccccccccccccccc
Confidence              2677888988777655432  22 2346789999999966665 56677887776643211 1111111   123356


Q ss_pred             eEECCCCCEEEEEecCCc
Q 046018          202 VRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       202 i~~d~~G~l~va~~~~~~  219 (310)
                      ++++++|++.++....+.
T Consensus       147 v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEECTTSSEEEEEETTSC
T ss_pred             ccccccccceeccccCcE
Confidence            888999987776555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.41  E-value=1.4e-05  Score=66.59  Aligned_cols=142  Identities=13%  Similarity=0.065  Sum_probs=90.5

Q ss_pred             cceeceEEEeCCCCc-EEEEECCCc--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           46 CGRPLGIRFDKKTGD-LYIADAYLG--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~-l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      ...+..+++++ +|+ |+++....+  |..+|.++++.+++..     ....+..++++|+|++|.++.           
T Consensus        42 ~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~-----~~~~v~~~~~spdg~~l~~~~-----------  104 (360)
T d1k32a3          42 PLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKFEE-----NLGNVFAMGVDRNGKFAVVAN-----------  104 (360)
T ss_dssp             CSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEECCC-----CCCSEEEEEECTTSSEEEEEE-----------
T ss_pred             CCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEeeC-----CCceEEeeeecccccccceec-----------
Confidence            35677899999 665 544444433  7788999888765422     122467899999999555554           


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEec---------CCceEEEEEccCCCCCcceee
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAET---------SNCRILRFWLHGPNSGKQDVF  192 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~---------~~~~i~~~~~~~~~~~~~~~~  192 (310)
                             ..+.++.|+.++++...... .......++++|||+.|.++..         ..+.+++++..++   .....
T Consensus       105 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~  174 (360)
T d1k32a3         105 -------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---KIFAA  174 (360)
T ss_dssp             -------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---EEEEC
T ss_pred             -------cccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC---ceeee
Confidence                   26679999998887665443 3344578999999997766532         2345777877643   11112


Q ss_pred             eeCCCCCCeeEECCCCCEEEEE
Q 046018          193 AELPGFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       193 ~~~~~~p~~i~~d~~G~l~va~  214 (310)
                      .........+++.++|+..+..
T Consensus       175 ~~~~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         175 TTENSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             SCSSSBEEEEEECTTSCEEEEE
T ss_pred             cccccccccccccCCCCEEEEE
Confidence            1122233557888998754433

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.41  E-value=2.6e-06  Score=74.16  Aligned_cols=99  Identities=9%  Similarity=0.040  Sum_probs=69.4

Q ss_pred             eCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEEecCCCeEEEEecCCceE--
Q 046018          101 DEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVALSRDRTFILIAETSNCRI--  176 (310)
Q Consensus       101 d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i--  176 (310)
                      .+||++||+++..                 +++|.++|+++.+.....  +....|+|++++||++++||+...+..+  
T Consensus        80 tpDGr~lfV~d~~-----------------~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          80 RYDGKYLFINDKA-----------------NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             EEEEEEEEEEETT-----------------TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             cCCCCEEEEEcCC-----------------CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            5899999999854                 778999999998766533  3466799999999999999987655544  


Q ss_pred             ----------------EEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018          177 ----------------LRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAKKG  219 (310)
Q Consensus       177 ----------------~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~  219 (310)
                                      ..+|..+.   +.......++.|+++.++++|. +|+++.....
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~---~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~  199 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETM---DVAWQVIVDGNLDNTDADYTGKYATSTCYNSER  199 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTC---SEEEEEEESSCCCCEEECSSSSEEEEEESCTTC
T ss_pred             cCcccccccccccceEEeecCccc---eeeEEEecCCCccceEECCCCCEEEEEecCCCc
Confidence                            23443321   1111111346789999999996 6666665443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.40  E-value=3.7e-06  Score=71.50  Aligned_cols=127  Identities=8%  Similarity=-0.214  Sum_probs=83.9

Q ss_pred             CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--
Q 046018           95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--  172 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--  172 (310)
                      ...++..+++++.|++....             ......|+.+|.++++......... ..+++++|||+++|+++..  
T Consensus        22 ~~~~a~~~~~~~~~v~~~~~-------------~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~   87 (368)
T d1mdah_          22 SCDHGPGAISRRSHITLPAY-------------FAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFA   87 (368)
T ss_dssp             CBCCCCCCCTTEEEEEECTT-------------TCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEET
T ss_pred             ccccccCCCCcceeEEeecc-------------CCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCc
Confidence            45566778888888875431             1235679999999988765443333 3479999999999998642  


Q ss_pred             -------CceEEEEEccCCCCCcceeee--e-----CCCCCCeeEECCCC-CEEEEEecCCccceeeeeeccccccEEee
Q 046018          173 -------NCRILRFWLHGPNSGKQDVFA--E-----LPGFPDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       173 -------~~~i~~~~~~~~~~~~~~~~~--~-----~~~~p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                             .+.|.+||..+.+..  ..+.  .     ....|.++++++|| .||++....+.+    ...+...++....
T Consensus        88 ~~~~g~~d~~v~v~D~~t~~~~--~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v----~~~d~~~~~~~~~  161 (368)
T d1mdah_          88 RSAKGKRTDYVEVFDPVTFLPI--ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA----AGLSVPGASDDQL  161 (368)
T ss_dssp             TTTSSSEEEEEEEECTTTCCEE--EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE----EEEEETTTEEEEE
T ss_pred             cccccccCCeEEEEECCCCcEe--eeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE----EEEECCCCcEeEE
Confidence                   456999998753211  1111  0     12357899999999 577887766653    3345567777776


Q ss_pred             ccch
Q 046018          238 LPLS  241 (310)
Q Consensus       238 ~~~~  241 (310)
                      ++.+
T Consensus       162 ~~~~  165 (368)
T d1mdah_         162 TKSA  165 (368)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            6554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.37  E-value=1.7e-05  Score=69.53  Aligned_cols=166  Identities=13%  Similarity=0.164  Sum_probs=97.9

Q ss_pred             ccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCC----ccccCCcceEEeCC---CCEEEEEeCCC
Q 046018           43 EHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAG----QPLRFTNDLDIDEH---KGVIYFTDSST  114 (310)
Q Consensus        43 ~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~----~~~~~~~~i~~d~~---g~~l~v~~~~~  114 (310)
                      ..-...|.+|++.+ +|+|||+... +.|.+++.+++..+.+......    ......-+|+++|+   ..++|++-...
T Consensus        23 a~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~  101 (450)
T d1crua_          23 LSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK  101 (450)
T ss_dssp             ECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             ECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecC
Confidence            44457999999999 9999999975 4599999888877666543211    11123457999974   33499874210


Q ss_pred             chhhhhhhhhhhcCCC--CceEEEE--eCCCCeEE---EEec-----CCcccceEEEecCCCeEEEEecC----------
Q 046018          115 SFQRRQFMSSILSGDK--TGRLLKY--EKTTKEVT---ILLQ-----GLAFANGVALSRDRTFILIAETS----------  172 (310)
Q Consensus       115 ~~~~~~~~~~~~~~~~--~g~v~~~--d~~~~~~~---~~~~-----~~~~~~gi~~~~d~~~lyv~~~~----------  172 (310)
                      ....       .....  ...+.++  +.......   .+..     .......|++.||+. ||++--.          
T Consensus       102 ~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~~~~~~  173 (450)
T d1crua_         102 NPKS-------TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLF  173 (450)
T ss_dssp             CTTC---------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTT
T ss_pred             CCCC-------cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCcccccccc
Confidence            0000       00000  1123333  33222221   1111     123356899999997 9997321          


Q ss_pred             ----------------------CceEEEEEccCCCCC--------cceeeeeCCCCCCeeEECCCCCEEEEEecC
Q 046018          173 ----------------------NCRILRFWLHGPNSG--------KQDVFAELPGFPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       173 ----------------------~~~i~~~~~~~~~~~--------~~~~~~~~~~~p~~i~~d~~G~l~va~~~~  217 (310)
                                            .++|.++++++....        ..++++.--..|.++++|++|+||++++..
T Consensus       174 ~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~l~~~e~G~  248 (450)
T d1crua_         174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP  248 (450)
T ss_dssp             SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred             cccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccceeeeccccc
Confidence                                  278999988754211        012333322457889999999999998864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.36  E-value=9.1e-05  Score=62.23  Aligned_cols=170  Identities=11%  Similarity=0.018  Sum_probs=90.8

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccc--cCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPL--RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~--~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      ..|.++++.++...+|++....+ +..++..++..............  ..+..+..++++..++.+.            
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  232 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY------------  232 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecC------------
Confidence            44667778874445777766644 77778777665443222111111  1233444555555333332            


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEe-------------cCCcccceEEEecCCCeEEEEec---------CCceEEEEEc
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILL-------------QGLAFANGVALSRDRTFILIAET---------SNCRILRFWL  181 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~-------------~~~~~~~gi~~~~d~~~lyv~~~---------~~~~i~~~~~  181 (310)
                             .+.++.++..++......             ........+++++|++.+|+...         ..+.|.++|.
T Consensus       233 -------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~  305 (373)
T d2madh_         233 -------SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             -------CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence                   445566655444332211             11122356778888877765433         3456777776


Q ss_pred             cCCCCCcceeeeeCCCCCCeeEECCCCC--EEEEEecCCccceeeeeeccccccEEeeccchh
Q 046018          182 HGPNSGKQDVFAELPGFPDNVRSNSNGE--FWVALHAKKGLFGKLILLNSWLGKTLLKLPLSF  242 (310)
Q Consensus       182 ~~~~~~~~~~~~~~~~~p~~i~~d~~G~--l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~  242 (310)
                      ..++   .......+..|.++++++||+  ||++....+.+    ...+..+|+.+..++...
T Consensus       306 ~t~~---~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v----~v~D~~tg~~~~~~~~~g  361 (373)
T d2madh_         306 LVGQ---TSSQISLGHDVDAISVAQDGGPDLYALSAGTEVL----HIYDAGAGDQDQSTVELG  361 (373)
T ss_pred             CCCc---EEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeE----EEEECCCCCEEEEECCCC
Confidence            5331   111112345688999999996  55555555542    333456788777775443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=0.00015  Score=60.16  Aligned_cols=114  Identities=16%  Similarity=0.103  Sum_probs=70.9

Q ss_pred             eeceEEEeCCCCcEE-EEECC-C-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLY-IADAY-L-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~-v~~~~-~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      ....+++++ +++.. ++... . .+..++.++++......   + .....+++++++++.++.++..            
T Consensus       117 ~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-h~~~v~~~~~~~~~~~~~~~~~------------  179 (325)
T d1pgua1         117 PISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVS---G-HSQRINACHLKQSRPMRSMTVG------------  179 (325)
T ss_dssp             CEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECC---S-CSSCEEEEEECSSSSCEEEEEE------------
T ss_pred             cEEEEEECC-CCCccceeeccccceEEEEeecccccceeee---e-cccccccccccccccceEEEee------------
Confidence            455788988 66544 44333 2 26667777665432211   1 1224678899998874454432            


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEecCC----cccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQGL----AFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~----~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                           .++.+..|+..+.+........    .....++++||+..++++...++.|..||...
T Consensus       180 -----~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         180 -----DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             -----TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             -----cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc
Confidence                 2678889998766554432221    22467999998655777667789999999764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=0.0006  Score=57.08  Aligned_cols=146  Identities=11%  Similarity=-0.012  Sum_probs=89.1

Q ss_pred             eeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      ....+++++ +|++.++....+ |..++...++.......    ....+..+++.+++..+..+.               
T Consensus       123 ~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~---------------  182 (388)
T d1erja_         123 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQG----HEQDIYSLDYFPSGDKLVSGS---------------  182 (388)
T ss_dssp             BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEE---------------
T ss_pred             CEEEEEECC-CCCcceeccccccccccccccccccccccc----ccccccccccccccccccccc---------------
Confidence            456799999 776655544444 77788887765433221    122466788889988455444               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecCCcccceEEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeeee----C---CCC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFAE----L---PGF  198 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~----~---~~~  198 (310)
                         ..+.+..||..+...............+++.+ +++ ++++...++.|..++......  ...+..    .   ...
T Consensus       183 ---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~  256 (388)
T d1erja_         183 ---GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDS  256 (388)
T ss_dssp             ---TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSC
T ss_pred             ---cceeeeeeeccccccccccccccccccccccCCCCC-eEEEEcCCCeEEEeecccCcc--ceeeccccccccCCCCC
Confidence               26789999988776655444444445556655 566 555556778999999764321  111111    1   122


Q ss_pred             CCeeEECCCCCEEEEEecCCc
Q 046018          199 PDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~~~~~  219 (310)
                      ...++++++|++.++....+.
T Consensus       257 v~~l~~s~~~~~l~s~~~d~~  277 (388)
T d1erja_         257 VYSVVFTRDGQSVVSGSLDRS  277 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEECCCCCEEEEEECCCc
Confidence            356889999987776655554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.32  E-value=0.00016  Score=61.07  Aligned_cols=167  Identities=10%  Similarity=0.030  Sum_probs=93.5

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....|++++ ++++.++... ..|..+|.+++.........  .....+..++++|+++.++++...            
T Consensus        52 ~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~s~d------------  116 (371)
T d1k8kc_          52 GQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL--RINRAARCVRWAPNEKKFAVGSGS------------  116 (371)
T ss_dssp             SCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECC--CCSSCEEEEEECTTSSEEEEEETT------------
T ss_pred             CCEEEEEECC-CCCEEEEEECCCeEEEEeecccccccccccc--cccccccccccccccccceeeccc------------
Confidence            4567899999 6665554443 44777788777654443321  112346789999999955555421            


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEe--cCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCc-------------c
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILL--QGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGK-------------Q  189 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~--~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~-------------~  189 (310)
                          ..-.++.++..........  ... .....++++||++.| ++.+.++.|..|+........             .
T Consensus       117 ----~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~  191 (371)
T d1k8kc_         117 ----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL-AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG  191 (371)
T ss_dssp             ----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE-EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT
T ss_pred             ----Ccceeeeeecccccccccccccccccccccccccccccce-eccccCcEEEEEeeccCccccccccccccccccce
Confidence                1234555555443332211  111 234678999999855 555677899999876432110             0


Q ss_pred             eeeeeC---CCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccccEEeec
Q 046018          190 DVFAEL---PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKL  238 (310)
Q Consensus       190 ~~~~~~---~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~  238 (310)
                      ......   .+....++++++|++.++....+.     +..+ ...++.+..+
T Consensus       192 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-----i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-----VCLADADKKMAVATL  239 (371)
T ss_dssp             CEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-----EEEEEGGGTTEEEEE
T ss_pred             eeeeeccCccCcEEEEEeecccccccccccCCc-----ceEEeeecccceeee
Confidence            111111   123456889999987666555454     3333 3445555444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=5.2e-05  Score=63.19  Aligned_cols=187  Identities=12%  Similarity=0.047  Sum_probs=105.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCC---ccccCCcceEEeCCCCEEEEEeCCCchhh---
Q 046018           47 GRPLGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAG---QPLRFTNDLDIDEHKGVIYFTDSSTSFQR---  118 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~~l~v~~~~~~~~~---  118 (310)
                      ..|.+++++++.+.++++....  .+..++..+++..........   .+......+++.++|+.+++.........   
T Consensus       106 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~  185 (355)
T d2bbkh_         106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH  185 (355)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             CCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEe
Confidence            4678899999555688887653  366778888765433222111   11223456788899886776643321000   


Q ss_pred             -------h----------hhhhhhhcCCCCceEEEEeCCCCeEEEEecC-------------CcccceEEEecCCCeEEE
Q 046018          119 -------R----------QFMSSILSGDKTGRLLKYEKTTKEVTILLQG-------------LAFANGVALSRDRTFILI  168 (310)
Q Consensus       119 -------~----------~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------------~~~~~gi~~~~d~~~lyv  168 (310)
                             .          ..-..+......+.++.++..+++...+...             ......+++++|++.+|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~  265 (355)
T d2bbkh_         186 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  265 (355)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             cccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence                   0          0000011123456778888776655432210             012346899999998888


Q ss_pred             EecC---------CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC--EEEEEecCCccceeeeeeccccccEEee
Q 046018          169 AETS---------NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE--FWVALHAKKGLFGKLILLNSWLGKTLLK  237 (310)
Q Consensus       169 ~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--l~va~~~~~~~~~~~i~~~~~~g~~~~~  237 (310)
                      +...         .+.|+++|....+.  ...+ .....|..+++++||+  ++++....+.+    ...+..+|+.+..
T Consensus       266 ~~~~~~~~~~~~~~~~v~v~d~~t~~~--~~~~-~~~~~~~~~a~spDG~~~l~v~~~~d~~i----~v~D~~tg~~~~~  338 (355)
T d2bbkh_         266 LVDQRDEWRHKTASRFVVVLDAKTGER--LAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTL----YIHDAESGEELRS  338 (355)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCE--EEEE-EEEEEECEEEECCSSSCEEEEEETTTTEE----EEEETTTCCEEEE
T ss_pred             EeccCCceeecCCCCeEEEEeCCCCcE--EEEe-cCCCCEEEEEEcCCCCeEEEEEECCCCEE----EEEECCCCCEEEE
Confidence            7543         25789998774321  1111 1224578999999996  45554444442    2333457777766


Q ss_pred             ccc
Q 046018          238 LPL  240 (310)
Q Consensus       238 ~~~  240 (310)
                      ++.
T Consensus       339 i~~  341 (355)
T d2bbkh_         339 VNQ  341 (355)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.30  E-value=7.7e-06  Score=69.46  Aligned_cols=120  Identities=9%  Similarity=-0.061  Sum_probs=80.7

Q ss_pred             eEEEeCCCCcEEEEECC--C---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           51 GIRFDKKTGDLYIADAY--L---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~--~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .++..++..+.|++...  .   .|+.+|.+++++......      .....++++|||++||+++....  +      .
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~------~~~~~~a~spDg~~i~~~~~~~~--~------~   89 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------AFLSLAVAGHSGSDFALASTSFA--R------S   89 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------CTTCEEEECTTSSCEEEEEEEET--T------T
T ss_pred             ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC------CCCCcceECCCCCEEEEEcccCc--c------c
Confidence            34445533456666432  2   388899999886544332      13447999999998998873210  0      1


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEec--------CCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQ--------GLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~--------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ..+..++.|..||+.+++......        ....|.+++++|||++||+++...+.|.++|....
T Consensus        90 ~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~  156 (368)
T d1mdah_          90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA  156 (368)
T ss_dssp             TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred             cccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            113346779999998886643221        23457899999999999999888899999998754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=0.00042  Score=55.60  Aligned_cols=148  Identities=11%  Similarity=0.066  Sum_probs=90.2

Q ss_pred             cceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           46 CGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .+....|++++ ++++.++...++ |..+|.++++.......    ....+..+++++++. +.++...           
T Consensus        17 ~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~----h~~~V~~~~~~~~~~-~~~~~~~-----------   79 (317)
T d1vyhc1          17 RSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKG----HTDSVQDISFDHSGK-LLASCSA-----------   79 (317)
T ss_dssp             SSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECC----CSSCEEEEEECTTSS-EEEEEET-----------
T ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeC----CCCcEEEEeeecccc-ccccccc-----------
Confidence            35677899999 777666655544 77889887765433221    122467899999999 5444422           


Q ss_pred             hhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018          125 ILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVR  203 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  203 (310)
                            .+.+..++....+...... .......+.++++++.++. ...++.+..++...+.  ....+.........++
T Consensus        80 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          80 ------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS-ASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVR  150 (317)
T ss_dssp             ------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEE-EETTSEEEEEETTTCC--EEEEEECCSSCEEEEE
T ss_pred             ------ccccccccccccccccccccccccceeeeccCCCceEEe-eccCcceeEeecccce--eeeEEccCCCcceeee
Confidence                  3445556655444433222 2334567888999986554 4667899999876431  1122222223346678


Q ss_pred             ECCCCCEEEEEecCCc
Q 046018          204 SNSNGEFWVALHAKKG  219 (310)
Q Consensus       204 ~d~~G~l~va~~~~~~  219 (310)
                      ++++|++.++....+.
T Consensus       151 ~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1         151 PNQDGTLIASCSNDQT  166 (317)
T ss_dssp             ECTTSSEEEEEETTSC
T ss_pred             cccCCCEEEEEeCCCe
Confidence            8899988776665554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.20  E-value=0.00033  Score=57.25  Aligned_cols=87  Identities=8%  Similarity=-0.016  Sum_probs=56.5

Q ss_pred             CCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--CCCCCeeEECC
Q 046018          130 KTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--PGFPDNVRSNS  206 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~  206 (310)
                      .++.|..||..+++....... ......++++|+++.|+. ...++.|..|+.....  ....+...  ......+++++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s-~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT-GSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECS
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeecccc--cccccccccccCceEEEEECC
Confidence            467899999887776543333 334578999999985554 4677899999976421  11112111  12235689999


Q ss_pred             CCCEEEEEecCCc
Q 046018          207 NGEFWVALHAKKG  219 (310)
Q Consensus       207 ~G~l~va~~~~~~  219 (310)
                      +|++.++....+.
T Consensus       281 ~~~~l~~g~~dg~  293 (340)
T d1tbga_         281 SGRLLLAGYDDFN  293 (340)
T ss_dssp             SSCEEEEEETTSC
T ss_pred             CCCEEEEEECCCE
Confidence            9988777666554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.18  E-value=7e-05  Score=60.87  Aligned_cols=114  Identities=10%  Similarity=0.110  Sum_probs=72.3

Q ss_pred             eeceEEEeCCCCcEE-EEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           48 RPLGIRFDKKTGDLY-IADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~-v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .+..+++++ +++++ ++...+.|..+|.++++...+.....   ...+..+++++++++++.++               
T Consensus       138 ~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~---------------  198 (299)
T d1nr0a2         138 NSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH---PAEITSVAFSNNGAFLVATD---------------  198 (299)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEEC---SSCEEEEEECTTSSEEEEEE---------------
T ss_pred             ccccccccc-cccccccccccccccccccccccccccccccc---cccccccccccccccccccc---------------
Confidence            345678888 55544 44444558888887776544322211   12467899999999554444               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecC----CcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQG----LAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~----~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                         .++.|..||..++........    ......++++|+++.|+. ...++.|.+|++...
T Consensus       199 ---~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-gs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         199 ---QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT-GSLDNSVIVWNMNKP  256 (299)
T ss_dssp             ---TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTCT
T ss_pred             ---cccccccccccccccccccccccccccccccccccccccceEE-EcCCCEEEEEECCCC
Confidence               267899999766543322111    123468899999985554 456789999998753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.00099  Score=53.28  Aligned_cols=113  Identities=12%  Similarity=0.092  Sum_probs=70.9

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      .....+++++ ++.+.+.... ..+...+...........    ........+.+.++++.+..+.              
T Consensus        60 ~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--------------  120 (317)
T d1vyhc1          60 DSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMH----GHDHNVSSVSIMPNGDHIVSAS--------------  120 (317)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCC----CCSSCEEEEEECSSSSEEEEEE--------------
T ss_pred             CcEEEEeeec-ccccccccccccccccccccccccccccc----cccccceeeeccCCCceEEeec--------------
Confidence            4566888988 6665555444 345566665554322211    1122456788899999444333              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                          .++.+..||..+++..... ........++++++++. +++...++.|..++...
T Consensus       121 ----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~~~~~~~  174 (317)
T d1vyhc1         121 ----RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVAT  174 (317)
T ss_dssp             ----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTT
T ss_pred             ----cCcceeEeecccceeeeEEccCCCcceeeecccCCCE-EEEEeCCCeEEEEeecc
Confidence                2677888998877654433 23344678899999984 44556778999998764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=4.6e-05  Score=62.68  Aligned_cols=112  Identities=5%  Similarity=-0.003  Sum_probs=73.3

Q ss_pred             ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI  125 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~  125 (310)
                      ..+..+++++ ++.++++... +.|..++.+..........  ......+..++++++|++|+++.              
T Consensus       227 ~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~g~--------------  289 (340)
T d1tbga_         227 SDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAGY--------------  289 (340)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECC--TTCCSCEEEEEECSSSCEEEEEE--------------
T ss_pred             CCeEEEEECC-CCCEEEEEeCCCeEEEEeeccccccccccc--ccccCceEEEEECCCCCEEEEEE--------------
Confidence            4456789998 6665555444 4477888887664333222  11223467899999999444433              


Q ss_pred             hcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEE
Q 046018          126 LSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFW  180 (310)
Q Consensus       126 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~  180 (310)
                          .+|.|..||..+++....... ......++++||++.|+ +.+.++.|.+||
T Consensus       290 ----~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~-s~s~Dg~v~iWd  340 (340)
T d1tbga_         290 ----DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA-TGSWDSFLKIWN  340 (340)
T ss_dssp             ----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEETTSCEEEEC
T ss_pred             ----CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE-EEccCCEEEEeC
Confidence                267899999887766544433 33457899999998555 446678888875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.15  E-value=0.00024  Score=59.53  Aligned_cols=154  Identities=10%  Similarity=0.091  Sum_probs=91.3

Q ss_pred             cceeceEEEeCCCCcEEEEECC-------------CceEEEeCCCCeE--EEEEee--cCCccccCCcceEE--eCCCC-
Q 046018           46 CGRPLGIRFDKKTGDLYIADAY-------------LGFQVVGPEGGLA--TQLVTE--AAGQPLRFTNDLDI--DEHKG-  105 (310)
Q Consensus        46 ~~~p~gl~~d~~~g~l~v~~~~-------------~gi~~~d~~~~~~--~~~~~~--~~~~~~~~~~~i~~--d~~g~-  105 (310)
                      ...|..|++++ +|.+|++...             +.|+.+|.++...  ..+...  ......-.|.+|.+  +++|+ 
T Consensus        34 ~~G~EDi~~~~-dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~  112 (340)
T d1v04a_          34 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV  112 (340)
T ss_dssp             CSCCCEEEECT-TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE
T ss_pred             CCCcceEEECC-CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE
Confidence            34688899998 8988888631             2377777655422  222111  11112235777764  56665 


Q ss_pred             EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecC---------
Q 046018          106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETS---------  172 (310)
Q Consensus       106 ~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~---------  172 (310)
                      +|++.+-..             ....-.++.++.++.+++.+.    +....||.+++..+++ +|+++..         
T Consensus       113 ~L~vvnH~~-------------~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~  178 (340)
T d1v04a_         113 YLLVVNHPG-------------SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKS  178 (340)
T ss_dssp             EEEEEECST-------------TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHH
T ss_pred             EEEEEeccC-------------CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhh
Confidence            256655210             001224677777665554322    3456799999999987 8988531         


Q ss_pred             --------CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC-CEEEEEecCCc
Q 046018          173 --------NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG-EFWVALHAKKG  219 (310)
Q Consensus       173 --------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~va~~~~~~  219 (310)
                              .+.|+.++.  +   ......+.-..|+||++++++ .|||+.....+
T Consensus       179 ~e~~~~~~~g~v~~~~~--~---~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~  229 (340)
T d1v04a_         179 WEMHLGLAWSFVTYYSP--N---DVRVVAEGFDFANGINISPDGKYVYIAELLAHK  229 (340)
T ss_dssp             HHHHTTCCCEEEEEECS--S---CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             hhHhhcCCceeEEEEcC--C---ceEEEcCCCCccceeEECCCCCEEEEEeCCCCe
Confidence                    234555442  2   233333322479999999998 58899887765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.08  E-value=0.00022  Score=60.69  Aligned_cols=169  Identities=13%  Similarity=0.067  Sum_probs=101.8

Q ss_pred             ceeceEEEeCCCCcEEEEECC-------------------Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCE
Q 046018           47 GRPLGIRFDKKTGDLYIADAY-------------------LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGV  106 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~-------------------~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~  106 (310)
                      ..+||+...+.....||....                   .+ +..+|.++.++..-..-  +   ..+.++.++++|++
T Consensus       132 ~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V--~---g~ld~~~~s~dGK~  206 (459)
T d1fwxa2         132 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV--S---GNLDNCDADYEGKW  206 (459)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE--S---SCCCCEEECSSSSE
T ss_pred             CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee--C---CChhccccCCCCCE
Confidence            578898886644566776521                   02 45778887765321111  1   25778999999998


Q ss_pred             EEEEeCCCc--------------------hhhhhhhhhhhcCCCCceEEEEeCCCC---eEEEEecCCcccceEEEecCC
Q 046018          107 IYFTDSSTS--------------------FQRRQFMSSILSGDKTGRLLKYEKTTK---EVTILLQGLAFANGVALSRDR  163 (310)
Q Consensus       107 l~v~~~~~~--------------------~~~~~~~~~~~~~~~~g~v~~~d~~~~---~~~~~~~~~~~~~gi~~~~d~  163 (310)
                      +|++.....                    |.+.......-.....+.+-.+|..+.   .+....+....|+|+.++|||
T Consensus       207 af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDG  286 (459)
T d1fwxa2         207 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDK  286 (459)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTS
T ss_pred             EEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCC
Confidence            888764321                    100000000000011233556665431   222233445679999999999


Q ss_pred             CeEEEEecCCceEEEEEccC------CCCCcce-eeee--CCCCCCeeEECCCCCEEEEEecCCcc
Q 046018          164 TFILIAETSNCRILRFWLHG------PNSGKQD-VFAE--LPGFPDNVRSNSNGEFWVALHAKKGL  220 (310)
Q Consensus       164 ~~lyv~~~~~~~i~~~~~~~------~~~~~~~-~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~  220 (310)
                      +++|++...+..+.++|...      .+..... ...+  +.-.|--.++|.+|+.|.+.+-..++
T Consensus       287 Kyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v  352 (459)
T d1fwxa2         287 KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQV  352 (459)
T ss_dssp             SEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             CEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceE
Confidence            99999999999999999851      1111111 2222  23457778999999999999877763

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.06  E-value=5.9e-05  Score=66.02  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC---------cccceEEEecC
Q 046018           92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL---------AFANGVALSRD  162 (310)
Q Consensus        92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---------~~~~gi~~~~d  162 (310)
                      +..|.+|++.|+|+ |||+...                 .|+|+++++++++.+.+....         ..--+|+++|+
T Consensus        26 L~~P~~la~~pdg~-llVter~-----------------~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQ-IWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSC-EEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCe-EEEEEec-----------------CCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45899999999999 9999832                 689999998888776554211         11136999985


Q ss_pred             ---CCeEEEEecC------------CceEEEEEccCCCCC--cce-eeeeCCC----CCCeeEECCCCCEEEEEecC
Q 046018          163 ---RTFILIAETS------------NCRILRFWLHGPNSG--KQD-VFAELPG----FPDNVRSNSNGEFWVALHAK  217 (310)
Q Consensus       163 ---~~~lyv~~~~------------~~~i~~~~~~~~~~~--~~~-~~~~~~~----~p~~i~~d~~G~l~va~~~~  217 (310)
                         ..++|++.+.            ...|.++..+.....  ... .+...+.    .-..|++++||.||++..+.
T Consensus        88 f~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~  164 (450)
T d1crua_          88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (450)
T ss_dssp             TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             CccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCC
Confidence               5578886531            123555555432111  111 2222321    12469999999999988754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=0.0029  Score=52.66  Aligned_cols=150  Identities=9%  Similarity=0.089  Sum_probs=89.2

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecC--------------CccccCCcceEEeCCCCEEEEEeC
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAA--------------GQPLRFTNDLDIDEHKGVIYFTDS  112 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~i~~d~~g~~l~v~~~  112 (310)
                      .....|++++ +|+++++...+.|..+|..+++.........              ......+.+|+++|+|++|..+. 
T Consensus        63 ~~V~~l~fs~-dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~-  140 (388)
T d1erja_          63 SVVCCVKFSN-DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA-  140 (388)
T ss_dssp             SCCCEEEECT-TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE-
T ss_pred             CcEEEEEECC-CCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc-
Confidence            4566899999 8887766554458888887766432221100              00112356899999999444443 


Q ss_pred             CCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCccee
Q 046018          113 STSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDV  191 (310)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~  191 (310)
                                       .++.|..|+...++....... ......+++++++..++.+ ...+.|..|+.....   ...
T Consensus       141 -----------------~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-~~~~~i~~~d~~~~~---~~~  199 (388)
T d1erja_         141 -----------------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG-SGDRTVRIWDLRTGQ---CSL  199 (388)
T ss_dssp             -----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE---EEE
T ss_pred             -----------------ccccccccccccccccccccccccccccccccccccccccc-ccceeeeeeeccccc---ccc
Confidence                             277899999887776654433 2335688999998866555 567899999876421   111


Q ss_pred             eeeCCCCCCee-EECCCCCEEEEEecCCc
Q 046018          192 FAELPGFPDNV-RSNSNGEFWVALHAKKG  219 (310)
Q Consensus       192 ~~~~~~~p~~i-~~d~~G~l~va~~~~~~  219 (310)
                      ..........+ ....+|++.++....+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  228 (388)
T d1erja_         200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRA  228 (388)
T ss_dssp             EEECSSCEEEEEECSTTCCEEEEEETTSC
T ss_pred             ccccccccccccccCCCCCeEEEEcCCCe
Confidence            11111122223 33456776666555454

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=0.0033  Score=51.52  Aligned_cols=170  Identities=11%  Similarity=0.002  Sum_probs=93.5

Q ss_pred             eeceEEEeCC-CCcEEEEECCCc-eEEEeCCCC----eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018           48 RPLGIRFDKK-TGDLYIADAYLG-FQVVGPEGG----LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF  121 (310)
Q Consensus        48 ~p~gl~~d~~-~g~l~v~~~~~g-i~~~d~~~~----~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~  121 (310)
                      ....++++|. +|++.++...+| |..+|...+    .+................+++++++|+++.++...        
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~--------  136 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG--------  136 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC--------
T ss_pred             CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc--------
Confidence            4567888863 455555444444 555554322    11111110000111235689999999955555432        


Q ss_pred             hhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC---CC
Q 046018          122 MSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL---PG  197 (310)
Q Consensus       122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~  197 (310)
                              ..+.+..++.++++....... ......++++|++..++++...++.|..|+....+.  .......   ..
T Consensus       137 --------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~  206 (325)
T d1pgua1         137 --------RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--SASDRTHHKQGS  206 (325)
T ss_dssp             --------SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE--EEEECSSSCTTC
T ss_pred             --------ccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccccc--ceecccccCCCC
Confidence                    244567777776655433332 233578999999886677666778999998653211  1111111   12


Q ss_pred             CCCeeEECCC-CCEEEEEecCCccceeeeeec-cccccEEeeccc
Q 046018          198 FPDNVRSNSN-GEFWVALHAKKGLFGKLILLN-SWLGKTLLKLPL  240 (310)
Q Consensus       198 ~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~  240 (310)
                      ....++++++ +.+.++....+.     +..+ ...++.+..+..
T Consensus       207 ~v~~v~~~pd~~~~l~s~~~d~~-----i~iwd~~~~~~~~~l~~  246 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVITVGSDRK-----ISCFDGKSGEFLKYIED  246 (325)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCC-----EEEEETTTCCEEEECCB
T ss_pred             ccEEeeeccccceeccccccccc-----eeeeeeccccccccccc
Confidence            3466889986 567666655554     3444 356666666543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.81  E-value=0.00036  Score=59.37  Aligned_cols=152  Identities=9%  Similarity=0.020  Sum_probs=89.9

Q ss_pred             cEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh----hhhhhhhhhcCCCCceE
Q 046018           60 DLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ----RRQFMSSILSGDKTGRL  134 (310)
Q Consensus        60 ~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~----~~~~~~~~~~~~~~g~v  134 (310)
                      .|||.+.. .+|.++|.++.+...+...+..   ..+.++...+++++.||....+.-.    ....+- . .....+.+
T Consensus       101 ylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~-d-~~~y~~~~  175 (459)
T d1fwxa2         101 FLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME-D-VANYVNVF  175 (459)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT-C-GG-EEEEE
T ss_pred             EEEEEcCCCceEEEEECcceeeeEEEecCCC---CCCceeecccCCCeEEEEccCccccccCCCCcccc-c-hhhcceEE
Confidence            58888877 4699999999998777655322   2566777776666677765321100    000000 0 01123456


Q ss_pred             EEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--------------ceEEEEEcc--------CC--------
Q 046018          135 LKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--------------CRILRFWLH--------GP--------  184 (310)
Q Consensus       135 ~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--------------~~i~~~~~~--------~~--------  184 (310)
                      ..+|.++.+..........+.++.+++||+++|++.-.+              +.+.+++..        ++        
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            788998876654433445788999999999999875321              233444431        00        


Q ss_pred             -----C--CCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018          185 -----N--SGKQDVFAELPGFPDNVRSNSNGEFWVALHA  216 (310)
Q Consensus       185 -----~--~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~  216 (310)
                           .  ......+...+..|.|+.+++||...+++..
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC
Confidence                 0  0011112233467999999999976666554

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=0.0057  Score=49.52  Aligned_cols=166  Identities=8%  Similarity=0.009  Sum_probs=83.3

Q ss_pred             ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      .....|++.+ ++.|+.+...+.|..++............  .............++++.+..+.               
T Consensus        54 ~~V~~l~~s~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------------  115 (355)
T d1nexb2          54 GGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEG--HNSTVRCLDIVEYKNIKYIVTGS---------------  115 (355)
T ss_dssp             SCEEEEEEET-TTEEEEEETTCCEEEEETTTTEEEEEECC--CSSCEEEEEEEEETTEEEEEEEE---------------
T ss_pred             CCEEEEEEcC-CCEEEEEeccccccccccccccccccccc--ccccccccccccccccceeeeec---------------
Confidence            4566889987 66666665555588888887765433221  11111223344556666333333               


Q ss_pred             cCCCCceEEEEeCCCCeEEEEec-----------CCc-----------ccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQ-----------GLA-----------FANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~-----------~~~-----------~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                         .++.|..|+..+........           ...           ...-....++++.+ ++....+.|..++....
T Consensus       116 ---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~d~~i~~~d~~~~  191 (355)
T d1nexb2         116 ---RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV-VSGSYDNTLIVWDVAQM  191 (355)
T ss_dssp             ---TTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEE-EEEETTSCEEEEETTTT
T ss_pred             ---CCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccccee-eeecccceeeeeecccc
Confidence               25677778765543221100           000           01123455667744 44466788999987642


Q ss_pred             CCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018          185 NSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL  240 (310)
Q Consensus       185 ~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~  240 (310)
                      .  ..............+.+++++...+.....+.+    ...+...+..+..+..
T Consensus       192 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i----~i~d~~~~~~~~~~~~  241 (355)
T d1nexb2         192 K--CLYILSGHTDRIYSTIYDHERKRCISASMDTTI----RIWDLENGELMYTLQG  241 (355)
T ss_dssp             E--EEEEECCCSSCEEEEEEETTTTEEEEEETTSCE----EEEETTTCCEEEEECC
T ss_pred             c--ceeeeeccccccccccccccceeeecccccceE----Eeeecccccccccccc
Confidence            1  111111122233567788888777666655542    2223345555555443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=0.01  Score=47.05  Aligned_cols=110  Identities=13%  Similarity=0.076  Sum_probs=69.4

Q ss_pred             eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .|..++..+ ++.+.+.....++..++..++........       .....++.++++.+.++...              
T Consensus        82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~--------------  139 (287)
T d1pgua2          82 QPKVASANN-DGFTAVLTNDDDLLILQSFTGDIIKSVRL-------NSPGSAVSLSQNYVAVGLEE--------------  139 (287)
T ss_dssp             CEEEEEECS-SSEEEEEETTSEEEEEETTTCCEEEEEEC-------SSCEEEEEECSSEEEEEETT--------------
T ss_pred             ceeeeeecc-CCceEEEeecccceeeeccceeeeeeccc-------cceeeeeeccCcceeeeccc--------------
Confidence            456677777 77777777777788887777664333221       12345667777756665522              


Q ss_pred             CCCCceEEEEeCCCCeEEEEec-C-CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQ-G-LAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~-~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                         .+.+..|+..+........ . ......++++|++++|+++ ..++.|..|+...
T Consensus       140 ---~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~  193 (287)
T d1pgua2         140 ---GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG-DVMGKILLYDLQS  193 (287)
T ss_dssp             ---TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTT
T ss_pred             ---cceeeeeeccccceeeeeeeccCCceeEEEeccCccccccc-cccccccceeecc
Confidence               3457778865433322221 1 2235689999999966655 5678999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=0.0052  Score=48.87  Aligned_cols=143  Identities=10%  Similarity=0.022  Sum_probs=78.3

Q ss_pred             eEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           51 GIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      ..++.+.+..+.++....+ +..++..+........   ......+..++++|+|.+|.+++                  
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~g~------------------  181 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK---TPLRAKPSYISISPSETYIAAGD------------------  181 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS---SCCSSCEEEEEECTTSSEEEEEE------------------
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeee---eccCCceeEEEeccCcccccccc------------------
Confidence            3445552445666655544 6666765433221111   11122467899999999555555                  


Q ss_pred             CCceEEEEeCCCCeEEEEe-cC-CcccceEEEecCCC---------eEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018          130 KTGRLLKYEKTTKEVTILL-QG-LAFANGVALSRDRT---------FILIAETSNCRILRFWLHGPNSGKQDVFAELPGF  198 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~-~~-~~~~~gi~~~~d~~---------~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  198 (310)
                      .++.|..||..++...... .. ....+.++++|+++         .++++.+.++.|++|++..... ....+..-...
T Consensus       182 ~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-~~~~~~~h~~~  260 (287)
T d1pgua2         182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK-IIKALNAHKDG  260 (287)
T ss_dssp             TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC-CEEETTSSTTC
T ss_pred             ccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe-EEEEeCCCCCC
Confidence            2778999999877654321 11 22245677766432         2455666778999999763211 11111111233


Q ss_pred             CCeeEECCCCCEEEEEe
Q 046018          199 PDNVRSNSNGEFWVALH  215 (310)
Q Consensus       199 p~~i~~d~~G~l~va~~  215 (310)
                      ...+++.+++.|..+..
T Consensus       261 V~~v~~~~~~~l~s~g~  277 (287)
T d1pgua2         261 VNNLLWETPSTLVSSGA  277 (287)
T ss_dssp             EEEEEEEETTEEEEEET
T ss_pred             eEEEEECCCCEEEEEEC
Confidence            46677778776544443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=0.0015  Score=55.16  Aligned_cols=119  Identities=7%  Similarity=-0.012  Sum_probs=72.6

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCc--cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQ--PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL  126 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~  126 (310)
                      +..+++++ ++.|..+...+.|..+|.++++...........  -...++.|+++|+|+ +.++....            
T Consensus       187 ~~~v~~s~-dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D------------  252 (393)
T d1sq9a_         187 ATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDS------------  252 (393)
T ss_dssp             CCEEEECT-TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEE------------
T ss_pred             EEEEEECC-CCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc-eeeeecCC------------
Confidence            34578888 775544433344888899887653332221111  122468899999999 55443210            


Q ss_pred             cCCCCceEEEEeCCCCeEEEEecC--------------CcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          127 SGDKTGRLLKYEKTTKEVTILLQG--------------LAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       127 ~~~~~g~v~~~d~~~~~~~~~~~~--------------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                        ...+.+..||.++++.......              ......++|+||++ ++++...++.|.+||.+.+
T Consensus       253 --~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         253 --NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             --TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTT
T ss_pred             --CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCCC
Confidence              0124577889887765432210              01236799999998 5566678899999998753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.46  E-value=0.0014  Score=56.90  Aligned_cols=123  Identities=11%  Similarity=-0.010  Sum_probs=79.4

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecC-CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAA-GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ...+.+.+ +++++. ...+.++.+|+.+++.+.+..... ......+.++.++|||++|.++.....         +..
T Consensus        19 ~~~~~W~~-d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~---------~~r   87 (470)
T d2bgra1          19 LYSLRWIS-DHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK---------QWR   87 (470)
T ss_dssp             CCCCEECS-SSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE---------CSS
T ss_pred             ccCCEeCC-CCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc---------eee
Confidence            34566666 666443 344569999999998776654321 111234678999999997776642110         001


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP  184 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~  184 (310)
                      ....+.++.||.++++...+.........+.++|||+.+.++  .++.+++++..++
T Consensus        88 ~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g  142 (470)
T d2bgra1          88 HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNL  142 (470)
T ss_dssp             SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTS
T ss_pred             eccCceEEEEECCCCcccccccCCccccccccccCcceeeEe--ecccceEEECCCC
Confidence            123577899999998876654444445678899999977654  3467888877654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.021  Score=45.91  Aligned_cols=132  Identities=10%  Similarity=0.075  Sum_probs=75.3

Q ss_pred             CCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE
Q 046018           58 TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK  136 (310)
Q Consensus        58 ~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~  136 (310)
                      ++++.+.... ..|..+|.++++.......    .......+.+++++..++++.                  .++.|..
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------------------~d~~i~i  227 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSG----HTDRIYSTIYDHERKRCISAS------------------MDTTIRI  227 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEEETTTTEEEEEE------------------TTSCEEE
T ss_pred             ccceeeeecccceeeeeecccccceeeeec----cccccccccccccceeeeccc------------------ccceEEe
Confidence            4444444444 4577888887764332221    122456788899999455444                  2678999


Q ss_pred             EeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEe
Q 046018          137 YEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALH  215 (310)
Q Consensus       137 ~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~  215 (310)
                      |+..++.......... ....++++  ++.| ++...++.|..||.....   ............-.++.+++++.++..
T Consensus       228 ~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g~  301 (355)
T d1nexb2         228 WDLENGELMYTLQGHTALVGLLRLS--DKFL-VSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILVSGS  301 (355)
T ss_dssp             EETTTCCEEEEECCCSSCCCEEEEC--SSEE-EEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEEEEE
T ss_pred             eeccccccccccccccccccccccc--ccee-eeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEEEEe
Confidence            9988876655443322 23556654  4544 445678899999986431   111111111112245567788877765


Q ss_pred             cC
Q 046018          216 AK  217 (310)
Q Consensus       216 ~~  217 (310)
                      ++
T Consensus       302 d~  303 (355)
T d1nexb2         302 EN  303 (355)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.26  E-value=0.0018  Score=51.55  Aligned_cols=93  Identities=13%  Similarity=0.137  Sum_probs=61.4

Q ss_pred             eEEeCC--CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--
Q 046018           98 LDIDEH--KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--  173 (310)
Q Consensus        98 i~~d~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--  173 (310)
                      +..+|+  |+++.++.                   .+.||.+|.++++.+.+..........+|+|||++|+++...+  
T Consensus         4 ~~~sPdi~G~~v~f~~-------------------~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~   64 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVC-------------------CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSS   64 (281)
T ss_dssp             CCEEEEEETTEEEEEE-------------------TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTT
T ss_pred             cccCCCCCCCEEEEEe-------------------CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCC
Confidence            456677  88777775                   5679999999998888776666677889999999886653211  


Q ss_pred             ---ceEEEEEccCCCCCcceeeeeCC-------CCCCeeEECCCCCEEE
Q 046018          174 ---CRILRFWLHGPNSGKQDVFAELP-------GFPDNVRSNSNGEFWV  212 (310)
Q Consensus       174 ---~~i~~~~~~~~~~~~~~~~~~~~-------~~p~~i~~d~~G~l~v  212 (310)
                         ..|++++..++..   ..+...+       .......+.++|+..+
T Consensus        65 ~~~~~i~~~~~~~g~~---~~lt~~~~~~~~~~~~~~~~~~spdg~~l~  110 (281)
T d1k32a2          65 LNTADLYFYNGENGEI---KRITYFSGKSTGRRMFTDVAGFDPDGNLII  110 (281)
T ss_dssp             CCEEEEEEEETTTTEE---EECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             CCceEEEEEEecCCce---EEeeecCCCccCccccccccccCCCCCEEE
Confidence               2588888775421   1121110       1234567778886443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0098  Score=47.73  Aligned_cols=109  Identities=14%  Similarity=0.106  Sum_probs=61.7

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD  129 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~  129 (310)
                      ..++.++  +.|+.+...+.|..+|....+.......   ...+...-.++..+++ ++++..                 
T Consensus       221 ~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~s-----------------  277 (342)
T d2ovrb2         221 SGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQG---PNKHQSAVTCLQFNKN-FVITSS-----------------  277 (342)
T ss_dssp             EEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECS---TTSCSSCEEEEEECSS-EEEEEE-----------------
T ss_pred             eEEecCC--CEEEEEcCCCEEEEEecccccccccccc---cceeeeceeecccCCC-eeEEEc-----------------
Confidence            3455543  3455554445588888887665433322   1112223344555666 555442                 


Q ss_pred             CCceEEEEeCCCCeEEE-EecCC-----cccceEEEecCCCeEEEEecCCc----eEEEEEcc
Q 046018          130 KTGRLLKYEKTTKEVTI-LLQGL-----AFANGVALSRDRTFILIAETSNC----RILRFWLH  182 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~-~~~~~-----~~~~gi~~~~d~~~lyv~~~~~~----~i~~~~~~  182 (310)
                      .+|.|..||..+++... +....     .....++++|++. ++++...++    .|+++|.+
T Consensus       278 ~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECC
T ss_pred             CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCC
Confidence            27889999998876543 32111     1246789999886 444444444    58888876

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.15  E-value=0.035  Score=43.48  Aligned_cols=86  Identities=14%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018           69 GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL  148 (310)
Q Consensus        69 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  148 (310)
                      .|+.+|.++++.+++... .    ......+++|||++|.++.....            ......++.++..+++.+.+.
T Consensus        22 dl~~~d~~~g~~~~Lt~~-~----~~~~~p~~SPDG~~iaf~~~~~~------------~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2          22 DLWEHDLKSGSTRKIVSN-L----GVINNARFFPDGRKIAIRVMRGS------------SLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTTCCEEEEECS-S----SEEEEEEECTTSSEEEEEEEEST------------TCCEEEEEEEETTTTEEEECC
T ss_pred             cEEEEECCCCCEEEEecC-C----CcccCEEECCCCCEEEEEEeeCC------------CCCceEEEEEEecCCceEEee
Confidence            377777777777666332 1    12456789999998877642110            112346999999988877654


Q ss_pred             cCC-------cccceEEEecCCCeEEEEec
Q 046018          149 QGL-------AFANGVALSRDRTFILIAET  171 (310)
Q Consensus       149 ~~~-------~~~~gi~~~~d~~~lyv~~~  171 (310)
                      ...       ......+++||++.|+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             ecCCCccCccccccccccCCCCCEEEEEEc
Confidence            221       12356889999998887644

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.039  Score=43.09  Aligned_cols=168  Identities=10%  Similarity=0.009  Sum_probs=80.8

Q ss_pred             cccCCCCCccccccceeceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEE
Q 046018           33 ECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYF  109 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v  109 (310)
                      |..+.+...+..........+++|+..+|.++....   .++..+..++..+.+... .    ........+|+|+.+.+
T Consensus        25 d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          25 DYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             ETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECTTSSEEEE
T ss_pred             cCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee-e----cccccceecCCCCeeeE
Confidence            444434333332323334678999444554444442   378888887776555332 1    13345667888885554


Q ss_pred             EeCCCchh------hh-----------------------hhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEe
Q 046018          110 TDSSTSFQ------RR-----------------------QFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALS  160 (310)
Q Consensus       110 ~~~~~~~~------~~-----------------------~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~  160 (310)
                      ........      ..                       ..............++.++.+++....+...........++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s  179 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVS  179 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEEC
T ss_pred             eeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccc
Confidence            43211000      00                       00000001111224556665554444333333333456899


Q ss_pred             cCCCeEEEEecCCc--eEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC
Q 046018          161 RDRTFILIAETSNC--RILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE  209 (310)
Q Consensus       161 ~d~~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  209 (310)
                      ||++.+++.....+  .|+.++..++   ..+.. ...+.-....+++||+
T Consensus       180 pdg~~~~~~~~~~~~~~i~~~~~~~~---~~~~~-~~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         180 SDGKFMVMVSSNGGQQHIAKQDLATG---GVQVL-SSTFLDETPSLAPNGT  226 (269)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTC---CEEEC-CCSSSCEEEEECTTSS
T ss_pred             cccceeEEEeecCCceeeeEeecccc---cceEe-ecCccccceEECCCCC
Confidence            99998777655544  4444443322   12222 1222234568999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.0059  Score=51.36  Aligned_cols=132  Identities=15%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             ccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC---c-eEEEeCCCCe
Q 046018            4 TGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL---G-FQVVGPEGGL   79 (310)
Q Consensus         4 ~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~---g-i~~~d~~~~~   79 (310)
                      ++..++.|+.|+......+.       .+.+.    ..+.........++++| +|++.++....   + |..+|.++++
T Consensus       200 sgs~Dg~i~iwd~~~~~~~~-------~~~~~----~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~  267 (393)
T d1sq9a_         200 TGFNNGTVQISELSTLRPLY-------NFESQ----HSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGE  267 (393)
T ss_dssp             EECTTSEEEEEETTTTEEEE-------EEECC----C---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             EEeCCCcEEEEeeccccccc-------ccccc----cccccccceEEEccccc-ccceeeeecCCCCcceeeecccccce
Confidence            45667778888776542211       01110    11122224566899999 77766665432   2 5566888776


Q ss_pred             EEEEEeecC-------Ccc--ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC
Q 046018           80 ATQLVTEAA-------GQP--LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG  150 (310)
Q Consensus        80 ~~~~~~~~~-------~~~--~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~  150 (310)
                      .........       ...  ...+++|+++|+|+ +.++...                 ++.|..||.++++......+
T Consensus       268 ~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~-----------------D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGW-----------------DGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             EEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEET-----------------TSEEEEEETTTTEEEEEEEC
T ss_pred             eeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECC-----------------CCEEEEEECCCCCEEEEECC
Confidence            543322110       000  12367899999999 6666533                 78999999999876654433


Q ss_pred             Cc-----ccceEEEecCCCe
Q 046018          151 LA-----FANGVALSRDRTF  165 (310)
Q Consensus       151 ~~-----~~~gi~~~~d~~~  165 (310)
                      ..     ....+++++++..
T Consensus       330 H~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         330 HCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             CGGGCSSGGGCCCBCTTSCB
T ss_pred             cCCcccCCccEEEECCCCCE
Confidence            22     2346788988874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.98  E-value=0.0086  Score=51.64  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=61.4

Q ss_pred             CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC------cccceEEEecCCCeEEE
Q 046018           95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL------AFANGVALSRDRTFILI  168 (310)
Q Consensus        95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~------~~~~gi~~~~d~~~lyv  168 (310)
                      ...+...+++. ++..+                   .+.++.+|+++++.+.+....      .....+.|+||+++|++
T Consensus        19 ~~~~~W~~d~~-~~~~~-------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~   78 (470)
T d2bgra1          19 LYSLRWISDHE-YLYKQ-------------------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILL   78 (470)
T ss_dssp             CCCCEECSSSE-EEEES-------------------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEE
T ss_pred             ccCCEeCCCCE-EEEEc-------------------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEE
Confidence            34567778887 44333                   567999999999877655332      23468899999998776


Q ss_pred             Eec--------CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEE
Q 046018          169 AET--------SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       169 ~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~  214 (310)
                      +..        ..+.+++||+.++..   ..+...+.....+.++|||...+-.
T Consensus        79 ~~~~~~~~r~s~~~~~~l~d~~~~~~---~~l~~~~~~~~~~~~SPDG~~ia~~  129 (470)
T d2bgra1          79 EYNYVKQWRHSYTASYDIYDLNKRQL---ITEERIPNNTQWVTWSPVGHKLAYV  129 (470)
T ss_dssp             EEEEEECSSSCEEEEEEEEETTTTEE---CCSSCCCTTEEEEEECSSTTCEEEE
T ss_pred             EECCcceeeeccCceEEEEECCCCcc---cccccCCccccccccccCcceeeEe
Confidence            532        235788999875422   2222223334556788888654433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.082  Score=41.11  Aligned_cols=85  Identities=9%  Similarity=-0.030  Sum_probs=55.9

Q ss_pred             eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018           70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ  149 (310)
Q Consensus        70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  149 (310)
                      |+..|.+++..+++.... .    ....-+.+|||++|.++...               .....++.++..++..+.+..
T Consensus        21 l~i~d~dG~~~~~l~~~~-~----~~~sP~wSPDGk~IAf~~~~---------------~~~~~~~~~~~~~~~~~~~~~   80 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSP-Q----PLMSPAWSPDGSKLAYVTFE---------------SGRSALVIQTLANGAVRQVAS   80 (269)
T ss_dssp             EEEEETTSCSCEEEEEES-S----CEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTTCCEEEEEC
T ss_pred             EEEEcCCCCCcEEEecCC-C----ceeeeEECCCCCEEEEEEee---------------ccCcceeeeecccCceeEEee
Confidence            555566665555554321 1    12346899999988777633               124468888888887777766


Q ss_pred             CCcccceEEEecCCCeEEEEecCCc
Q 046018          150 GLAFANGVALSRDRTFILIAETSNC  174 (310)
Q Consensus       150 ~~~~~~gi~~~~d~~~lyv~~~~~~  174 (310)
                      .........++||++.++......+
T Consensus        81 ~~~~~~~~~~spdg~~i~~~~~~~~  105 (269)
T d2hqsa1          81 FPRHNGAPAFSPDGSKLAFALSKTG  105 (269)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             eecccccceecCCCCeeeEeeecCC
Confidence            6666778899999997766544443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.62  E-value=0.2  Score=44.19  Aligned_cols=30  Identities=13%  Similarity=0.235  Sum_probs=24.5

Q ss_pred             eceEEEeCCCCcEEEEECCCceEEEeCCCCeE
Q 046018           49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA   80 (310)
Q Consensus        49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~   80 (310)
                      ..|+++.  +++||+++....++.+|.++++.
T Consensus       108 ~rg~a~~--~~~i~~~~~~g~l~alda~tG~~  137 (571)
T d2ad6a1         108 DRGLAYG--AGQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             CCCCEEE--TTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCcceee--CCeEEEEeCCCcEEeeehhhhhh
Confidence            3577775  57999998777799999999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.47  E-value=0.071  Score=44.06  Aligned_cols=136  Identities=12%  Similarity=0.127  Sum_probs=75.3

Q ss_pred             eccccccccCCCCCccccccceeceE------EEeCCCC-cEEEEECC-C---c--eEEEeCCCCeEEEEEeec--CCcc
Q 046018           27 TTSQRKECVRPFAPDIEHICGRPLGI------RFDKKTG-DLYIADAY-L---G--FQVVGPEGGLATQLVTEA--AGQP   91 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~gl------~~d~~~g-~l~v~~~~-~---g--i~~~d~~~~~~~~~~~~~--~~~~   91 (310)
                      .||+.||..+++.+.+  ..+++..+      .+.. .+ .|.++... .   .  ++.+++....+..+....  ....
T Consensus        50 ~Gl~vYdL~G~~l~~~--~~Gr~NNVDvr~~~~l~~-~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~  126 (353)
T d1h6la_          50 SGLAVYSLEGKMLHSY--HTGKLNNVDIRYDFPLNG-KKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASA  126 (353)
T ss_dssp             SCCEEEETTCCEEEEC--CSSCEEEEEEEEEEEETT-EEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECS
T ss_pred             CCEEEEcCCCcEEEec--ccCCcCccccccccccCC-cceEEEEEeCCcCcceeEEEEEecCcccccccccccccccccc
Confidence            5788899888443222  22455433      3332 22 24444432 1   2  567787777665442211  1112


Q ss_pred             ccCCcceEE--eCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEe--C-CCCeEEE----EecCCcccceEEEec
Q 046018           92 LRFTNDLDI--DEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYE--K-TTKEVTI----LLQGLAFANGVALSR  161 (310)
Q Consensus        92 ~~~~~~i~~--d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d--~-~~~~~~~----~~~~~~~~~gi~~~~  161 (310)
                      ...+.++|.  +++ |. +|+....                ..|.+..|.  . ..+....    .......+.|++++.
T Consensus       127 ~~~vYGlc~y~~~~~g~-~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd  189 (353)
T d1h6la_         127 IDEVYGFSLYHSQKTGK-YYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD  189 (353)
T ss_dssp             SSSCCCEEEEECTTTCC-EEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET
T ss_pred             cCcceEEEEEecCCCCe-EEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC
Confidence            335778887  654 65 5544321                355554442  2 2232221    123445688999999


Q ss_pred             CCCeEEEEecCCceEEEEEccC
Q 046018          162 DRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       162 d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                      +.++||+++. +.+||+|+.+.
T Consensus       190 e~~~LyisEE-~~Giw~~~a~~  210 (353)
T d1h6la_         190 EYGSLYIAEE-DEAIWKFSAEP  210 (353)
T ss_dssp             TTTEEEEEET-TTEEEEEESST
T ss_pred             CCCcEEEecC-ccceEEEEecc
Confidence            9999999976 56899998763

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.17  E-value=0.37  Score=42.31  Aligned_cols=69  Identities=12%  Similarity=0.090  Sum_probs=41.1

Q ss_pred             CcccccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCC
Q 046018            2 PYTGVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG   78 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~   78 (310)
                      +|....++.|.++|.++..  |.-         ++..+..... ........+++..  +++||+++....|+.+|..++
T Consensus        69 vyv~t~~~~v~AlDa~tG~~lW~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG  137 (560)
T d1kv9a2          69 IYTSMSWSRVIAVDAASGKELWRY---------DPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTG  137 (560)
T ss_dssp             EEEEEGGGEEEEEETTTCCEEEEE---------CCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTC
T ss_pred             EEEECCCCeEEEEeCCCCCEEEEE---------CCCCCccccccccccccccCccee--CCeEEEEeCCCEEEEEECCCC
Confidence            4666677889999998776  862         1111000000 1111223356554  468999987777999999888


Q ss_pred             eEE
Q 046018           79 LAT   81 (310)
Q Consensus        79 ~~~   81 (310)
                      +..
T Consensus       138 ~~~  140 (560)
T d1kv9a2         138 KAI  140 (560)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.36  Score=41.30  Aligned_cols=153  Identities=8%  Similarity=0.074  Sum_probs=82.8

Q ss_pred             eEEEeCCCCcEEEEECC--C---ceEEEeCCCCeEEEEEeecCCcccc-CCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018           51 GIRFDKKTGDLYIADAY--L---GFQVVGPEGGLATQLVTEAAGQPLR-FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS  124 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~--~---gi~~~d~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~  124 (310)
                      .+.+.+ ++++++....  +   .|..+|+.+++.+.+.......=.. ......+.++|+.+++....           
T Consensus       259 ~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s-----------  326 (465)
T d1xfda1         259 MVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI-----------  326 (465)
T ss_dssp             EEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE-----------
T ss_pred             eeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee-----------
Confidence            456666 7787776543  1   2778899999887665432211111 12456788888744332100           


Q ss_pred             hhcCCCCceEEEEeC-------CCCeEEEEecCCcc-cceEEEecCCCeEEEEecC----CceEEEEEccCCCCCcceee
Q 046018          125 ILSGDKTGRLLKYEK-------TTKEVTILLQGLAF-ANGVALSRDRTFILIAETS----NCRILRFWLHGPNSGKQDVF  192 (310)
Q Consensus       125 ~~~~~~~g~v~~~d~-------~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~----~~~i~~~~~~~~~~~~~~~~  192 (310)
                        .....+.++++..       .++..+.+..+.-. -+-++++++++.+|++...    ...||+++.++...  .+++
T Consensus       327 --e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~l  402 (465)
T d1xfda1         327 --PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCL  402 (465)
T ss_dssp             --CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCS
T ss_pred             --eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceee
Confidence              0112334565532       21222222222111 1235789999989887543    44689988876422  2222


Q ss_pred             ee-C--CCCCCeeEECCCCCEEEEEecCCc
Q 046018          193 AE-L--PGFPDNVRSNSNGEFWVALHAKKG  219 (310)
Q Consensus       193 ~~-~--~~~p~~i~~d~~G~l~va~~~~~~  219 (310)
                      .. +  ...-..+.++++|..+|-+..+-.
T Consensus       403 t~~~~~~~~~~~~~~S~~~~y~v~~~s~~~  432 (465)
T d1xfda1         403 SCDLVENCTYFSASFSHSMDFFLLKCEGPG  432 (465)
T ss_dssp             STTSSSSCCCCEEEECTTSSEEEEECCSSS
T ss_pred             ccccCCCCCEEEEEECCCCCEEEEEeecCC
Confidence            21 1  112357889999999887776543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.034  Score=44.20  Aligned_cols=59  Identities=10%  Similarity=0.163  Sum_probs=41.6

Q ss_pred             CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEe
Q 046018           94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE  170 (310)
Q Consensus        94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~  170 (310)
                      ..++|+++|+++ ++++..                 .+|.|..||.++++............-++++++++.|.++.
T Consensus       253 ~v~~l~~sp~~~-~lasg~-----------------~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         253 PVNSIEFSPRHK-FLYTAG-----------------SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             CEEEEEECTTTC-CEEEEE-----------------TTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             cceeEEecCCcc-EEEEEC-----------------CCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence            356899999999 555543                 27889999998876543333333445689999999776653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.038  Score=47.77  Aligned_cols=113  Identities=10%  Similarity=-0.007  Sum_probs=67.6

Q ss_pred             CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCC-chhhhhhhhhhhcCCCCceEEE
Q 046018           58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST-SFQRRQFMSSILSGDKTGRLLK  136 (310)
Q Consensus        58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~-~~~~~~~~~~~~~~~~~g~v~~  136 (310)
                      ++.++.-+..+.|..+|..+++.+.+.... ......+....++|||+++++..... .|.          ....+..+.
T Consensus        27 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r----------~s~~~~~~i   95 (465)
T d1xfda1          27 DTEFIYREQKGTVRLWNVETNTSTVLIEGK-KIESLRAIRYEISPDREYALFSYNVEPIYQ----------HSYTGYYVL   95 (465)
T ss_dssp             SSCBCCCCSSSCEEEBCGGGCCCEEEECTT-TTTTTTCSEEEECTTSSEEEEEESCCCCSS----------SCCCSEEEE
T ss_pred             CCcEEEEeCCCcEEEEECCCCCEEEEEcCc-cccccccceeEECCCCCeEEEEEcccceeE----------eeccccEEE
Confidence            344333333345888888877665554432 11222456778999999877765322 221          123677899


Q ss_pred             EeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          137 YEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       137 ~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                      +|..+++.+.+......+   .-..++|||+.+.++.  ++.|+..+..+
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~  143 (465)
T d1xfda1          96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVG  143 (465)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSS
T ss_pred             EEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCC
Confidence            999988877654322222   2367899998775542  46788776554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.09  E-value=0.23  Score=40.88  Aligned_cols=117  Identities=16%  Similarity=0.246  Sum_probs=69.3

Q ss_pred             ceeceEEE--eCCCCcEEEEECC-Cc---eEEEeCC-CCeEEE-EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           47 GRPLGIRF--DKKTGDLYIADAY-LG---FQVVGPE-GGLATQ-LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        47 ~~p~gl~~--d~~~g~l~v~~~~-~g---i~~~d~~-~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      ..+.|+++  ++.+|.+|+.... .|   .+.+... .+.+.. .......  ...+.++++|++.++||++..      
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~--~~q~EGCVvDde~~~LyisEE------  199 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM--NSQTEGMAADDEYGSLYIAEE------  199 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEET------
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC--CCccceEEEeCCCCcEEEecC------
Confidence            34779887  6656776655443 33   3445332 232221 2122111  125788999998777999984      


Q ss_pred             hhhhhhhhcCCCCceEEEEeC--CCCeEEEE--ec-C---CcccceEEEec--CC-CeEEEEecCCceEEEEEccC
Q 046018          119 RQFMSSILSGDKTGRLLKYEK--TTKEVTIL--LQ-G---LAFANGVALSR--DR-TFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~--~~~~~~~~--~~-~---~~~~~gi~~~~--d~-~~lyv~~~~~~~i~~~~~~~  183 (310)
                                  ...+++|+.  +......+  .. +   ...+.||++..  ++ .+|+++++++++..+|+..+
T Consensus       200 ------------~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         200 ------------DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             ------------TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             ------------ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence                        335777754  33222221  11 1   23578999876  33 37888999999999999764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.67  Score=36.04  Aligned_cols=115  Identities=11%  Similarity=-0.030  Sum_probs=63.7

Q ss_pred             ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCC--eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018           47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGG--LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS  123 (310)
Q Consensus        47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~  123 (310)
                      .....|+++| ++++.++...++ |..+|.+++  ..........   ...+.++++.+++..+.++..           
T Consensus        12 d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h---~~~V~~v~f~~~~~~~l~sg~-----------   76 (342)
T d1yfqa_          12 DYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY---KHPLLCCNFIDNTDLQIYVGT-----------   76 (342)
T ss_dssp             SCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC---SSCEEEEEEEESSSEEEEEEE-----------
T ss_pred             CCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCC---CCCEEEEEEeCCCCCEEEEcc-----------
Confidence            3567899999 666555544444 555565433  2221211111   124678888887552444432           


Q ss_pred             hhhcCCCCceEEEEeCCCCeEEEEecCCcc-c-ceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          124 SILSGDKTGRLLKYEKTTKEVTILLQGLAF-A-NGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                            .++.|..|+...+........... . ......++.. .+++....+.+..||...
T Consensus        77 ------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          77 ------VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             ------TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHH
T ss_pred             ------cccceeeeecccccccccccccccccccccccccccc-cccccccccccceeeccc
Confidence                  377899998876544433222222 2 2334445555 555556778999998763

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.52  E-value=1.3  Score=38.51  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=46.8

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCC--CeeEECCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFP--DNVRSNSN  207 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p--~~i~~d~~  207 (310)
                      .|.+..+|+.+++..-.........+=+++-.+..+|+ .+.++.|+.||.++++    .++.. ++...  .-|.+..+
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~-G~~dg~l~A~Da~tGe----~LW~~~l~~~~~~~P~ty~~d  511 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ-GTAAGQMHAYSADKGE----ALWQFEAQSGIVAAPMTFELA  511 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE-ECTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEEET
T ss_pred             ccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE-ECCCCcEEEEECCCCc----EeEEEECCCCccccCEEEEEC
Confidence            57899999999987653322212222233445554554 4678999999987542    22222 32111  22555567


Q ss_pred             CCEEEEEecC
Q 046018          208 GEFWVALHAK  217 (310)
Q Consensus       208 G~l~va~~~~  217 (310)
                      |+-||+...+
T Consensus       512 Gkqyv~v~aG  521 (560)
T d1kv9a2         512 GRQYVAIMAG  521 (560)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            8777775544

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=94.44  E-value=0.45  Score=35.19  Aligned_cols=136  Identities=10%  Similarity=-0.031  Sum_probs=77.6

Q ss_pred             ceEEEeCCCCcEEEEECCCceEEEeCCCCe-------EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGL-------ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~-------~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      .-|+++| +|+||++... .+++=.+.+-.       .+++..    ..-+...-+.+||+|- ||+.+           
T Consensus        43 ~~i~fsP-~G~LyaVr~~-~lY~Gp~~s~~nq~wf~~atrIG~----ggWn~FkflffdP~G~-LyaVt-----------  104 (235)
T d1tl2a_          43 KFLFLSP-GGELYGVLND-KIYKGTPPTHDNDNWMGRAKKIGN----GGWNQFQFLFFDPNGY-LYAVS-----------  104 (235)
T ss_dssp             SEEEECT-TSCEEEEETT-EEEEESCCCSTTCCHHHHCEEEEC----SCGGGCSEEEECTTSC-EEEEE-----------
T ss_pred             eEEEECC-CCcEEEEECC-eEEECCCCCcchHHHHHhhhhccc----CcccceEEEEECCCce-EEEec-----------
Confidence            3589999 9999998665 45554333221       122221    1233456688999998 99887           


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEE-------EEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCC----CCcce
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVT-------ILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPN----SGKQD  190 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~-------~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~----~~~~~  190 (310)
                              .+.|++=-|-+.+.+       .+-.. -..-.-+-++|+|. ||... . +++++-.+-.+.    +...+
T Consensus       105 --------~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~-LYaV~-~-~~l~k~~pP~~~~d~WL~~st  173 (235)
T d1tl2a_         105 --------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-G-QQFYKALPPVSNQDNWLARAT  173 (235)
T ss_dssp             --------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-T-TEEEEECCCSSTTCCHHHHCE
T ss_pred             --------CcceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCce-EEEEE-C-CcEEEcCCCCCCCchhhhhhh
Confidence                    356666554332221       12111 11224688999997 88873 3 457776553221    11112


Q ss_pred             eeee-CCCCCCeeEECCCCCEEEEE
Q 046018          191 VFAE-LPGFPDNVRSNSNGEFWVAL  214 (310)
Q Consensus       191 ~~~~-~~~~p~~i~~d~~G~l~va~  214 (310)
                      .+.. .-..+..+.+.++|+||-..
T Consensus       174 ~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         174 KIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             EEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             hhccCcccCceEEEECCCCcEEEEe
Confidence            2221 11346789999999999873

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=93.74  E-value=0.41  Score=35.39  Aligned_cols=103  Identities=14%  Similarity=0.062  Sum_probs=61.9

Q ss_pred             eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEe---ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVT---EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~---~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .+.+|| .|-||+++. +.+++-.+-+.+......   ......-....-|.+||+|. ||...                
T Consensus        91 flffdP-~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~-LYaV~----------------  151 (235)
T d1tl2a_          91 FLFFDP-NGYLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH----------------  151 (235)
T ss_dssp             EEEECT-TSCEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE----------------
T ss_pred             EEEECC-CceEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCce-EEEEE----------------
Confidence            688999 999999985 468887665443221110   01111222344677999999 99886                


Q ss_pred             CCCCceEEEEeCCCCe-------EEEEe-cCCcccceEEEecCCCeEEEEecCCceEEE
Q 046018          128 GDKTGRLLKYEKTTKE-------VTILL-QGLAFANGVALSRDRTFILIAETSNCRILR  178 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~-------~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~  178 (310)
                         +..+++..|-.+.       .+.+. ..-..+..|.++|||. |+.+. . +.+++
T Consensus       152 ---~~~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~-~-g~~Y~  204 (235)
T d1tl2a_         152 ---GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ-G-GKFYE  204 (235)
T ss_dssp             ---TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE-T-TEEEE
T ss_pred             ---CCcEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEe-C-CeEEe
Confidence               3457776654331       12222 2223467999999998 77763 2 55655

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.34  E-value=1.3  Score=37.01  Aligned_cols=130  Identities=10%  Similarity=0.001  Sum_probs=70.2

Q ss_pred             eEEEeCCCCeEEEEEeecC--CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE
Q 046018           70 FQVVGPEGGLATQLVTEAA--GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL  147 (310)
Q Consensus        70 i~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  147 (310)
                      +++.....+..+.+.+...  ........+++++|+|+++.++-+.             .+.....|..+|.++++....
T Consensus       100 ~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~-------------~G~e~~~l~v~Dl~tg~~~~~  166 (430)
T d1qfma1         100 LYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPD  166 (430)
T ss_dssp             EEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEE
T ss_pred             EEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEecc-------------ccCchheeEEeccCcceeccc
Confidence            4555554455555544321  1111123467889999977766532             122345688899999987542


Q ss_pred             ecCCcccceEEEecCCCeEEEEecC---------------CceEEEEEccCCCCCcceeeeeC--CCCCCeeEECCCCCE
Q 046018          148 LQGLAFANGVALSRDRTFILIAETS---------------NCRILRFWLHGPNSGKQDVFAEL--PGFPDNVRSNSNGEF  210 (310)
Q Consensus       148 ~~~~~~~~gi~~~~d~~~lyv~~~~---------------~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~l  210 (310)
                      .-......++++++|++.+|++...               ..+|++..+.+.......++...  +...-++...++|+.
T Consensus       167 ~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~  246 (430)
T d1qfma1         167 VLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY  246 (430)
T ss_dssp             EEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred             ccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce
Confidence            2111223679999999988775321               23677776654322212222221  112224556777765


Q ss_pred             EE
Q 046018          211 WV  212 (310)
Q Consensus       211 ~v  212 (310)
                      .+
T Consensus       247 l~  248 (430)
T d1qfma1         247 VL  248 (430)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.31  E-value=0.71  Score=37.62  Aligned_cols=114  Identities=10%  Similarity=0.045  Sum_probs=69.6

Q ss_pred             eEEEeCCCCcEEEEECC------C------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018           51 GIRFDKKTGDLYIADAY------L------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR  118 (310)
Q Consensus        51 gl~~d~~~g~l~v~~~~------~------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~  118 (310)
                      ..++.+.+|+||+....      .      -+.++|+.+++.+...... ..........++.++|+ +|+....     
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~-i~v~Gg~-----   95 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQ-IVVTGGN-----   95 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSC-EEEECSS-----
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-CCcccceeEEEEecCCc-EEEeecC-----
Confidence            44444548899886431      1      1567899888654332221 11222345678899999 8887532     


Q ss_pred             hhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC--cccceEEEecCCCeEEEEec-C-----CceEEEEEccC
Q 046018          119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL--AFANGVALSRDRTFILIAET-S-----NCRILRFWLHG  183 (310)
Q Consensus       119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~--~~~~gi~~~~d~~~lyv~~~-~-----~~~i~~~~~~~  183 (310)
                                 ....+.+||+++.+........  ..-.+.++.+|++ +|+..- .     ...+++||+..
T Consensus        96 -----------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          96 -----------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             -----------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             -----------CCcceeEecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCC
Confidence                       2446889999988887643221  1124677788988 555422 1     24689999864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.07  E-value=1.4  Score=35.62  Aligned_cols=116  Identities=12%  Similarity=-0.014  Sum_probs=69.0

Q ss_pred             ceEEEeCCCCcEEEEECC--CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           50 LGIRFDKKTGDLYIADAY--LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        50 ~gl~~d~~~g~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      ++.++.. +|+||++...  ..+.++|+.+...+......   ....-...++.++|+ +|+.......           
T Consensus        79 ~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~---~~r~~~~~~~~~dG~-v~v~GG~~~~-----------  142 (387)
T d1k3ia3          79 PGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ---VARGYQSSATMSDGR-VFTIGGSWSG-----------  142 (387)
T ss_dssp             CEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCS---SCCSSCEEEECTTSC-EEEECCCCCS-----------
T ss_pred             eEEEEec-CCcEEEeecCCCcceeEecCccCccccccccc---ccccccceeeecCCc-eeeecccccc-----------
Confidence            3667777 8899998654  34888999988766443221   112345678888999 7777532110           


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCccc--------------ce-EEEecCCCeEEEEecCCceEEEEEcc
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLAFA--------------NG-VALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~~~--------------~g-i~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                      ......+.+||+.+.+.+.+......+              .. +...++++ +++.......++.++..
T Consensus       143 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         143 GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECST
T ss_pred             ccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcc
Confidence            112345899999999888654221110              01 22334555 66655555666776654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=1.6  Score=33.79  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=27.1

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH  182 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~  182 (310)
                      .+.+..++..+++............ ....+....+. .....+.|..++..
T Consensus       116 d~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~d~~i~~~d~~  165 (342)
T d2ovrb2         116 DATLRVWDIETGQCLHVLMGHVAAV-RCVQYDGRRVV-SGAYDFMVKVWDPE  165 (342)
T ss_dssp             TSEEEEEESSSCCEEEEEECCSSCE-EEEEECSSCEE-EEETTSCEEEEEGG
T ss_pred             ceeEEEeecccccceeeeecccccc-eeeccccceee-eecCCCeEEEeecc
Confidence            5667788877666554332222222 22333444343 34566788888865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=1.5  Score=33.04  Aligned_cols=65  Identities=15%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             EEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEE
Q 046018           99 DIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR  178 (310)
Q Consensus        99 ~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~  178 (310)
                      +++++|+ +.++..                 .+|.|..||.++++..........+ -.+++++++.| ++...++.|..
T Consensus        20 c~~~d~~-~l~sgs-----------------~Dg~i~vWd~~~~~~~~~l~~H~~~-V~~v~~~~~~l-~s~s~D~~i~~   79 (293)
T d1p22a2          20 CLQYDDQ-KIVSGL-----------------RDNTIKIWDKNTLECKRILTGHTGS-VLCLQYDERVI-ITGSSDSTVRV   79 (293)
T ss_dssp             EEECCSS-EEEEEE-----------------SSSCEEEEESSSCCEEEEECCCSSC-EEEEECCSSEE-EEEETTSCEEE
T ss_pred             EEEEcCC-EEEEEe-----------------CCCeEEEEECCCCcEEEEEecCCCC-Eeeeeccccee-ecccccccccc
Confidence            4678898 555543                 3788999999888766544332222 23556677744 45567789999


Q ss_pred             EEccC
Q 046018          179 FWLHG  183 (310)
Q Consensus       179 ~~~~~  183 (310)
                      ++...
T Consensus        80 ~~~~~   84 (293)
T d1p22a2          80 WDVNT   84 (293)
T ss_dssp             EESSS
T ss_pred             ccccc
Confidence            98764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=1.7  Score=32.74  Aligned_cols=107  Identities=8%  Similarity=0.043  Sum_probs=60.0

Q ss_pred             ceE-EEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018           50 LGI-RFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS  127 (310)
Q Consensus        50 ~gl-~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~  127 (310)
                      .++ +++. +|++.++...+| |..+|.++++.........    ..+.  ++..+++ +.++..               
T Consensus        16 ~~V~c~~~-d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~----~~V~--~v~~~~~-~l~s~s---------------   72 (293)
T d1p22a2          16 KGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT----GSVL--CLQYDER-VIITGS---------------   72 (293)
T ss_dssp             CCEEEEEC-CSSEEEEEESSSCEEEEESSSCCEEEEECCCS----SCEE--EEECCSS-EEEEEE---------------
T ss_pred             CCEEEEEE-cCCEEEEEeCCCeEEEEECCCCcEEEEEecCC----CCEe--eeecccc-eeeccc---------------
Confidence            344 4566 566555555545 7788998887654432211    1233  4455777 444432               


Q ss_pred             CCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018          128 GDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG  183 (310)
Q Consensus       128 ~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~  183 (310)
                        .++.+..|+...+......... ........+....+.. ....+.+..++...
T Consensus        73 --~D~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  124 (293)
T d1p22a2          73 --SDSTVRVWDVNTGEMLNTLIHH-CEAVLHLRFNNGMMVT-CSKDRSIAVWDMAS  124 (293)
T ss_dssp             --TTSCEEEEESSSCCEEEEECCC-CSCEEEEECCTTEEEE-EETTSCEEEEECSS
T ss_pred             --cccccccccccccccccccccc-ccccccccccccceee-cccccceeEeeccc
Confidence              2778999998777655433222 2233344445553444 35667788888764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.71  E-value=3.8  Score=35.61  Aligned_cols=83  Identities=13%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCCCCC--eeEECCC
Q 046018          131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPGFPD--NVRSNSN  207 (310)
Q Consensus       131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~--~i~~d~~  207 (310)
                      .|.+..+|+.+|+..-.........+=+++-.+..+|+ .+.++.++.||.++++    .++. +++....  -|.+..+
T Consensus       456 ~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~-G~~dg~l~A~Da~TGe----~LW~~~~~~~~~~~P~ty~~~  530 (573)
T d1kb0a2         456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ-GTADGRLVAYHAATGE----KLWEAPTGTGVVAAPSTYMVD  530 (573)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE-ECTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEEET
T ss_pred             cccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEE-ECCCCeEEEEECCCCc----EeEEEECCCCccccCEEEEEC
Confidence            46899999999987753322222223334556664554 4677899999987542    2222 1222111  1444457


Q ss_pred             CCEEEEEecCC
Q 046018          208 GEFWVALHAKK  218 (310)
Q Consensus       208 G~l~va~~~~~  218 (310)
                      |+-||+-..+.
T Consensus       531 GkQYv~v~~G~  541 (573)
T d1kb0a2         531 GRQYVSVAVGW  541 (573)
T ss_dssp             TEEEEEEEECC
T ss_pred             CEEEEEEEeCC
Confidence            98888766543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.01  E-value=2.1  Score=37.38  Aligned_cols=121  Identities=11%  Similarity=0.015  Sum_probs=66.1

Q ss_pred             CcccccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCC
Q 046018            2 PYTGVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG   78 (310)
Q Consensus         2 ~~~~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~   78 (310)
                      +|....++.|.+++.++..  |.-         +...+.-... ........++++.  ++++|+++....++.+|.+++
T Consensus        80 vyv~t~~~~v~AlDa~TG~~~W~~---------~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG  148 (573)
T d1kb0a2          80 MYVSASWSVVHAIDTRTGNRIWTY---------DPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATG  148 (573)
T ss_dssp             EEEECGGGCEEEEETTTTEEEEEE---------CCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTC
T ss_pred             EEEECCCCeEEEEeCCCCCeEEEe---------CCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccc
Confidence            4666677889999988776  862         1111000000 0111223466665  478999987777999999999


Q ss_pred             eEEEEEeecCCccc-cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE
Q 046018           79 LATQLVTEAAGQPL-RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI  146 (310)
Q Consensus        79 ~~~~~~~~~~~~~~-~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  146 (310)
                      +..--......... .....--+-.++. +++......            ....|.|..+|..+|+..-
T Consensus       149 ~~~W~~~~~~~~~~~~~~~~~p~v~~~~-vivg~~~~~------------~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         149 KEVWHQNTFEGQKGSLTITGAPRVFKGK-VIIGNGGAE------------YGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             CEEEEEETTTTCCSSCBCCSCCEEETTE-EEECCBCTT------------TCCBCEEEEEETTTCCEEE
T ss_pred             cceecccCccCCcceEEeecceEEEecc-EEEeecccc------------ccccceEEEEecCCcccee
Confidence            85311111111110 0111111222555 777654321            1236789999999998764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.05  E-value=6.5  Score=34.07  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=48.4

Q ss_pred             CCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCC--CeeEEC
Q 046018          130 KTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFP--DNVRSN  205 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p--~~i~~d  205 (310)
                      ..|.|..+|+.+|+..-... ..+.-.|. ++..+..+|+ .+.++.++.||.++++    .++.- ++...  .-|.+.
T Consensus       464 ~~G~l~AiD~~TG~i~W~~~~~~p~~~g~-lstagglVF~-Gt~dg~l~A~Da~TGe----~LW~~~~~~~~~~~P~ty~  537 (582)
T d1flga_         464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGV-LATAGNLVFT-GTGDGYFKAFDAKSGK----ELWKFQTGSGIVSPPITWE  537 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCC-EEETTTEEEE-ECTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEE
T ss_pred             CCCeEEEEcCCCCcEEeecCCCCCCccce-eEEcCCeEEE-eCCCCeEEEEECCCCc----EeEEEECCCCccccCEEEE
Confidence            45789999999998765332 22222233 3445664565 4778899999987542    22221 33211  225656


Q ss_pred             CCCCEEEEEecC
Q 046018          206 SNGEFWVALHAK  217 (310)
Q Consensus       206 ~~G~l~va~~~~  217 (310)
                      .+|.-||+...+
T Consensus       538 ~~G~qYv~i~ag  549 (582)
T d1flga_         538 QDGEQYLGVTVG  549 (582)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCEEEEEEEeC
Confidence            789877775543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.93  E-value=7.6  Score=33.54  Aligned_cols=82  Identities=11%  Similarity=0.128  Sum_probs=47.4

Q ss_pred             CCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCCCC--CeeEEC
Q 046018          130 KTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPGFP--DNVRSN  205 (310)
Q Consensus       130 ~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p--~~i~~d  205 (310)
                      ..|.|..+|+.+|+..-... ....-.|.... .+..+|+. +.++.++.||.++++    .++. +++...  .-|.+.
T Consensus       442 ~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G-~~dg~l~A~Da~tGe----~lW~~~l~~~~~a~P~ty~  515 (571)
T d2ad6a1         442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYA-TLDGYLKALDNKDGK----ELWNFKMPSGGIGSPMTYS  515 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEE-CTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEE
T ss_pred             CcccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEE-CCCCeEEEEECCCCc----EEEEEECCCCceecceEEE
Confidence            45789999999998764332 22222333333 34546655 677999999987531    2222 233211  125445


Q ss_pred             CCCCEEEEEecC
Q 046018          206 SNGEFWVALHAK  217 (310)
Q Consensus       206 ~~G~l~va~~~~  217 (310)
                      .+|..||+...+
T Consensus       516 ~dGkqYi~v~~g  527 (571)
T d2ad6a1         516 FKGKQYIGSMYG  527 (571)
T ss_dssp             ETTEEEEEEEEC
T ss_pred             ECCEEEEEEEec
Confidence            579888876544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.06  E-value=8.8  Score=33.33  Aligned_cols=81  Identities=15%  Similarity=0.155  Sum_probs=47.6

Q ss_pred             ceEEEeCCC----CcEEEEECCCceEEEeCCCCeEEEEEeec---CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018           50 LGIRFDKKT----GDLYIADAYLGFQVVGPEGGLATQLVTEA---AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM  122 (310)
Q Consensus        50 ~gl~~d~~~----g~l~v~~~~~gi~~~d~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~  122 (310)
                      .|+++-..+    .+||+++....|+.+|.++++..--....   .......+.-++   ++. +++......+      
T Consensus       109 RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~---~~~-vivg~~~~e~------  178 (596)
T d1w6sa_         109 RGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV---KDK-VIIGSSGAEL------  178 (596)
T ss_dssp             CCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE---TTE-EEECCBCGGG------
T ss_pred             ceeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE---CCe-EEEeeccccc------
Confidence            466664422    24888877777999999999864322211   011111222222   555 8887654222      


Q ss_pred             hhhhcCCCCceEEEEeCCCCeEEE
Q 046018          123 SSILSGDKTGRLLKYEKTTKEVTI  146 (310)
Q Consensus       123 ~~~~~~~~~g~v~~~d~~~~~~~~  146 (310)
                            ...|.|..||..+|+..-
T Consensus       179 ------~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         179 ------GVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             ------TCCCEEEEEETTTCCEEE
T ss_pred             ------cccCceEEEECCCCcEEE
Confidence                  135789999999998764